Citrus Sinensis ID: 022042

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
Protein Sequence
MATMISSSSTVNLPMTVKTNSFSTSPSSSINSKHILPSQLPCTPTNHGLSLRYDGNPLRCRHRRSPQSTNSANFQVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSALGSLAA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccHHHHHHcccccccccEEEEccccccHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHccccccEEEEEEccHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccccEEccccccccccccccEEEccccccccccccccEEEccccccHHcccccccccccccccEEEEccccccEEEEEEcccccHHHHHHHHHHHcccEEEEHHHHHHHHHHHccHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccEEEEcccccHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHEEEccccEEEEcccEccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEcccccHHHHHHHHHHHHHHHHHHHHHcccHHcc
Coil and Loop (DISEMBL)
matmisssstvnlpmtvktnsfstspsssinskhilpsqlpctptnhglslrydgnplrcrhrrspqstnsanFQVLASatveplkimisgapasgkgtqcELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKehmekgqlvpDEIVVTMVKErlsqpdsqengwlldgyprslSQATALkkygfqpdlfillevpedtlvervvgrrldpvtgkiyhvkysppetDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSALGSLAA
Flexible Loop (DISEMBL)
matmisssstvnlpmTVKTNSFSTSPSSSINSKHILPSQLPCTPTNHGLSLRYDGNPLRCRHRrspqstnsanfQVLASATVEPLKIMISgapasgkgtQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKrakehmekgqlvpDEIVVTMVKERlsqpdsqengwlldGYPRSLSQATALKKYGFQPDLFILLEvpedtlvervvgrrldpvtgkiyhvkysppetdeiAARLTKRFDDTEEKVKLrlkthhhnveaVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSALGSLAA
Low Complexity Region (SEG)
MATMISSSSTVNLPMTVKTNsfstspsssinsKHILPSQLPCTPTNHGLSLRYDGNPLRCRHRRSPQSTNSANFQVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSALGSLAA
Disordered region (IsUnstruct)
*************************************************************************FQVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA*********************EIVVTMV************GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL************
Disordered Region (DISOPRED)
**************MT***********************************RYD********************************IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT***************
Disordered Region (DISEMBL)
*********TVNLPMTVKT************SKHILPSQLPCTPTNHGLSLRYDGNPLRCRHRRSPQSTNSANFQVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGS***********KGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRK********
Disordered Region (DISPRO)
***********NLPMTVKTNSF*****SSINSKHILPSQLPCTPTNHGLSLRYDGNPLRCRHRRSPQSTNSANFQVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRK********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATMISSSSTVNLPMTVKTNSFSTSPSSSINSKHILPSQLPCTPTNHGLSLRYDGNPLRCRHRRSPQSTNSANFQVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSALGSLAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	303	2.2.26 [Sep-21-2011]
Q9FIJ7	283	Probable adenylate kinase	yes	no	0.795	0.851	0.736	1e-104
P43188	222	Adenylate kinase, chlorop	N/A	no	0.729	0.995	0.719	1e-91
B4F1Q2	214	Adenylate kinase OS=Prote	yes	no	0.679	0.962	0.420	8e-45
A8GAV3	214	Adenylate kinase OS=Serra	yes	no	0.587	0.831	0.464	2e-44
A8AJW9	214	Adenylate kinase OS=Citro	yes	no	0.590	0.836	0.445	2e-44
A1JNB1	214	Adenylate kinase OS=Yersi	yes	no	0.587	0.831	0.459	1e-43
C6DB87	214	Adenylate kinase OS=Pecto	yes	no	0.666	0.943	0.415	2e-43
P0A1V4	214	Adenylate kinase OS=Salmo	yes	no	0.590	0.836	0.445	3e-43
P0A1V5	214	Adenylate kinase OS=Salmo	N/A	no	0.590	0.836	0.445	3e-43
B4TMG6	214	Adenylate kinase OS=Salmo	yes	no	0.590	0.836	0.445	3e-43

>sp|Q9FIJ7|KADC2_ARATH Probable adenylate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=At5g47840 PE=2 SV=1

 Score =  379 bits (972), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/243 (73%), Positives = 213/243 (87%), Gaps = 2/243 (0%)

Query: 61  RHRRSPQSTN--SANFQVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118
           RHRR  +S +  +  FQ++A+   EPLKIMISGAPASGKGTQCELI  KYGLVHI+AGDL
Sbjct: 39  RHRRVSRSPSIIAPKFQIVAAEKSEPLKIMISGAPASGKGTQCELITHKYGLVHISAGDL 98

Query: 119 LRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQA 178
           LRAEIA+GSENG+RAKEHMEKGQLVPDEIVV MVK+RLSQ DS++ GWLLDGYPRS SQA
Sbjct: 99  LRAEIASGSENGRRAKEHMEKGQLVPDEIVVMMVKDRLSQTDSEQKGWLLDGYPRSASQA 158

Query: 179 TALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF 238
           TALK +GFQPDLFI+LEVPE+ L+ERVVGRRLDPVTGKIYH+KYSPPET+EIA RLT+RF
Sbjct: 159 TALKGFGFQPDLFIVLEVPEEILIERVVGRRLDPVTGKIYHLKYSPPETEEIAVRLTQRF 218

Query: 239 DDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSAL 298
           DDTEEK KLRLKTH+ NV  VLS+Y+D+T+++ G+ +KE+VFAQID +L+ LL++R +A 
Sbjct: 219 DDTEEKAKLRLKTHNQNVSDVLSMYDDITIKIEGNRSKEEVFAQIDSSLSELLQERNTAP 278

Query: 299 GSL 301
            SL
Sbjct: 279 SSL 281

This small ubiquitous enzyme is essential for maintenance and cell growth.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 3

>sp|P43188|KADC_MAIZE Adenylate kinase, chloroplastic OS=Zea mays GN=ADK1 PE=1 SV=1

 Score =  336 bits (861), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 159/221 (71%), Positives = 188/221 (85%)

Query: 80  ATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK 139
           A  +PLK+MISGAPASGKGTQCELIK KY L HI+AGDLLRAEIAAGSENGKRAKE MEK
Sbjct: 1   ALADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEK 60

Query: 140 GQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPED 199
           GQLVPDEIVV MVKERL QPD+QENGWLLDGYPRS SQA AL+    +PD FILL+VP++
Sbjct: 61  GQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDE 120

Query: 200 TLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAV 259
            LVERVVGRRLDPVTGKIYH+KYSPPE +EIA+RLT+RFDDTEEKVKLRL+T++ N+E++
Sbjct: 121 LLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESL 180

Query: 260 LSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSALGS 300
           LS YE++ V+V G    + VFA+ID  L ++LE++   + S
Sbjct: 181 LSTYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMVSS 221

This small ubiquitous enzyme is essential for maintenance and cell growth. The maize enzyme also works with CMP, albeit with 10% of the activity with AMP.

Zea mays (taxid: 4577)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B4F1Q2|KAD_PROMH Adenylate kinase OS=Proteus mirabilis (strain HI4320) GN=adk PE=3 SV=1

 Score =  181 bits (458), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 139/214 (64%), Gaps = 8/214 (3%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           ++I++ GAP +GKGTQ + IKE YG+  I+ GD+LRA ++AG+E G +AK  M+ GQLV 
Sbjct: 1   MRIILLGAPGAGKGTQAQFIKENYGIPQISTGDMLRAAVSAGTELGLKAKALMDNGQLVT 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           DE+V+ +VKER+ Q D + NG+LLDG+PR++ QA A+K+ G   D  +   VP++ +VER
Sbjct: 61  DELVIALVKERIKQDDCR-NGFLLDGFPRTIPQADAMKEAGINVDFVLEFAVPDEIIVER 119

Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           +VGRR+   +G++YH+K++PP+     D     LT R DD EE V+ RL  +H     ++
Sbjct: 120 IVGRRVHAPSGRVYHIKFNPPKVENRDDVTGEELTTRKDDQEETVRKRLIEYHSQTAPLV 179

Query: 261 SLYEDVTVEVNGSVNKED---VFAQIDVALTNLL 291
           S Y++     N   +K D     ++I+  L N+L
Sbjct: 180 SYYQNEAKAGNAQYHKIDGTQKVSEINAELKNIL 213

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Proteus mirabilis (strain HI4320) (taxid: 529507)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|A8GAV3|KAD_SERP5 Adenylate kinase OS=Serratia proteamaculans (strain 568) GN=adk PE=3 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 128/183 (69%), Gaps = 5/183 (2%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           ++I++ GAP +GKGTQ + I EKYG+  I+ GD+LRA + AGSE GK+AKE M+ G+LV 
Sbjct: 1   MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKAGSELGKQAKEIMDAGKLVT 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           DE+V+ +VKER++Q D + NG+LLDG+PR++ QA A+K+ G   D  +  +VP++ +V+R
Sbjct: 61  DELVIALVKERITQEDCR-NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR 119

Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           +VGRR+   +G++YHVK++PP+     D     LT R DD EE V+ RL  +H     ++
Sbjct: 120 IVGRRVHAPSGRVYHVKFNPPKVEGKDDATGEDLTTRKDDQEETVRKRLVEYHQMTAPLI 179

Query: 261 SLY 263
           S Y
Sbjct: 180 SYY 182

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Serratia proteamaculans (strain 568) (taxid: 399741)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|A8AJW9|KAD_CITK8 Adenylate kinase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=adk PE=3 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 129/184 (70%), Gaps = 5/184 (2%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           ++I++ GAP +GKGTQ + I EKYG+V I+ GD+LRA + +GSE GK+AK+ M+ G+LV 
Sbjct: 1   MRIILLGAPGAGKGTQAQFIMEKYGIVQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           DE+V+ +VKER++Q D + NG+LLDG+PR++ QA A+K+ G   D  +  +VP++ +V+R
Sbjct: 61  DELVIALVKERIAQDDCR-NGFLLDGFPRTIPQADAMKEAGIAVDYVLEFDVPDELIVDR 119

Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           +VGRR+   +G++YH+K++PP+     D     LT R DD EE V+ RL  +H     ++
Sbjct: 120 IVGRRVHAASGRVYHIKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLI 179

Query: 261 SLYE 264
             Y+
Sbjct: 180 GYYQ 183

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) (taxid: 290338)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|A1JNB1|KAD_YERE8 Adenylate kinase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=adk PE=3 SV=1

 Score =  177 bits (448), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 127/183 (69%), Gaps = 5/183 (2%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           ++I++ GAP +GKGTQ + I EKYG+  I+ GD+LRA + AGSE G +AKE M+ G+LV 
Sbjct: 1   MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKAGSELGLKAKEIMDAGKLVT 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           DE+V+ +VKER++Q D + +G+LLDG+PR++ QA A+K+ G + D  +  +VP+D +VER
Sbjct: 61  DELVIALVKERITQDDCR-DGFLLDGFPRTIPQADAMKEAGIKVDYVLEFDVPDDLIVER 119

Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           +VGRR+   +G++YHVK++PP+     D     LT R DD E  V+ RL  +H     ++
Sbjct: 120 IVGRRVHAASGRVYHVKFNPPKVEDKDDVTGEDLTIRKDDQEATVRKRLVEYHQQTAPLV 179

Query: 261 SLY 263
           S Y
Sbjct: 180 SYY 182

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) (taxid: 393305)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|C6DB87|KAD_PECCP Adenylate kinase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=adk PE=3 SV=1

 Score =  176 bits (447), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/214 (41%), Positives = 139/214 (64%), Gaps = 12/214 (5%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           ++I++ GAP +GKGTQ + I EKYG+  I+ GD+LRA + AG+E GK+AKE M+ G+LV 
Sbjct: 1   MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKAGTELGKQAKEIMDAGKLVT 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           DE+V+ +VKER++Q D + NG+LLDG+PR++ QA A+K  G   D  I   VP++ +++R
Sbjct: 61  DELVIALVKERIAQDDCR-NGFLLDGFPRTIPQADAMKDVGINVDYVIEFAVPDELIIDR 119

Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           +VGRR+   +G++YHVK++PP+     D     LT R DD E+ V+ RL  +H     ++
Sbjct: 120 IVGRRVHAASGRVYHVKFNPPKVEGKDDVTGEDLTIRKDDHEDTVRKRLVEYHQQTAPLV 179

Query: 261 SLYEDVT-------VEVNGSVNKEDVFAQIDVAL 287
           S Y+           +V G+   E+V A+++  L
Sbjct: 180 SYYQKEADAGNTRYFKVEGTRKVEEVRAELETIL 213

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Pectobacterium carotovorum subsp. carotovorum (strain PC1) (taxid: 561230)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|P0A1V4|KAD_SALTY Adenylate kinase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=adk PE=3 SV=1

 Score =  175 bits (444), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 128/184 (69%), Gaps = 5/184 (2%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           ++I++ GAP +GKGTQ + I EKYG+  I+ GD+LRA + +GSE GK+AK+ M+ G+LV 
Sbjct: 1   MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           DE+V+ +VKER++Q D + NG+LLDG+PR++ QA A+K+ G   D  +  +VP++ +V+R
Sbjct: 61  DELVIALVKERIAQEDCR-NGFLLDGFPRTIPQADAMKEAGIVVDYVLEFDVPDELIVDR 119

Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           +VGRR+   +G++YHVK++PP+     D     LT R DD EE V+ RL  +H     ++
Sbjct: 120 IVGRRVHAASGRVYHVKFNPPKVEGKDDVTGEDLTTRKDDQEETVRKRLVEYHQMTAPLI 179

Query: 261 SLYE 264
             Y+
Sbjct: 180 GYYQ 183

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|P0A1V5|KAD_SALTI Adenylate kinase OS=Salmonella typhi GN=adk PE=3 SV=1

 Score =  175 bits (444), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 128/184 (69%), Gaps = 5/184 (2%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           ++I++ GAP +GKGTQ + I EKYG+  I+ GD+LRA + +GSE GK+AK+ M+ G+LV 
Sbjct: 1   MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           DE+V+ +VKER++Q D + NG+LLDG+PR++ QA A+K+ G   D  +  +VP++ +V+R
Sbjct: 61  DELVIALVKERIAQEDCR-NGFLLDGFPRTIPQADAMKEAGIVVDYVLEFDVPDELIVDR 119

Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           +VGRR+   +G++YHVK++PP+     D     LT R DD EE V+ RL  +H     ++
Sbjct: 120 IVGRRVHAASGRVYHVKFNPPKVEGKDDVTGEDLTTRKDDQEETVRKRLVEYHQMTAPLI 179

Query: 261 SLYE 264
             Y+
Sbjct: 180 GYYQ 183

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Salmonella typhi (taxid: 90370)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B4TMG6|KAD_SALSV Adenylate kinase OS=Salmonella schwarzengrund (strain CVM19633) GN=adk PE=3 SV=1

 Score =  175 bits (444), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 128/184 (69%), Gaps = 5/184 (2%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           ++I++ GAP +GKGTQ + I EKYG+  I+ GD+LRA + +GSE GK+AK+ M+ G+LV 
Sbjct: 1   MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           DE+V+ +VKER++Q D + NG+LLDG+PR++ QA A+K+ G   D  +  +VP++ +V+R
Sbjct: 61  DELVIALVKERIAQEDCR-NGFLLDGFPRTIPQADAMKEAGIVVDYVLEFDVPDELIVDR 119

Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           +VGRR+   +G++YHVK++PP+     D     LT R DD EE V+ RL  +H     ++
Sbjct: 120 IVGRRVHAASGRVYHVKFNPPKVEGKDDVTGEDLTTRKDDQEETVRKRLVEYHQMTAPLI 179

Query: 261 SLYE 264
             Y+
Sbjct: 180 GYYQ 183

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Salmonella schwarzengrund (strain CVM19633) (taxid: 439843)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
359811327	284	uncharacterized protein LOC100784319 [Gl	0.742	0.792	0.795	1e-102
15238822	283	adenosine monophosphate kinase [Arabidop	0.795	0.851	0.736	1e-102
449446345	290	PREDICTED: probable adenylate kinase 2,	0.805	0.841	0.74	1e-102
296089470	361	unnamed protein product [Vitis vinifera]	0.818	0.686	0.719	1e-101
359493416	303	PREDICTED: probable adenylate kinase 2,	0.818	0.818	0.719	1e-101
357470697	306	Adenylate kinase [Medicago truncatula] g	0.755	0.748	0.768	1e-100
297791885	296	hypothetical protein ARALYDRAFT_917605 [	0.792	0.810	0.721	5e-99
224135713	265	predicted protein [Populus trichocarpa]	0.844	0.966	0.676	1e-95
115474427	290	Os08g0109300 [Oryza sativa Japonica Grou	0.719	0.751	0.752	1e-93
255561530	269	adenylate kinase, putative [Ricinus comm	0.735	0.828	0.75	4e-93

>gi|359811327|ref|NP_001241286.1| uncharacterized protein LOC100784319 [Glycine max] gi|255642045|gb|ACU21289.1| unknown [Glycine max]

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/225 (79%), Positives = 205/225 (91%)

Query: 79  SATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHME 138
           S T E L +MISGAPASGKGTQC LI  KYGLVHIAAGDLLRAEIA GS+NGKRAK++ME
Sbjct: 60  SVTNEALNVMISGAPASGKGTQCHLITNKYGLVHIAAGDLLRAEIATGSDNGKRAKQYME 119

Query: 139 KGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPE 198
           KGQLVPDEIVV MVKERL +PDS+ENGWLLDGYPRSLSQATAL+  GF+P +F+LLEV E
Sbjct: 120 KGQLVPDEIVVMMVKERLLKPDSKENGWLLDGYPRSLSQATALEALGFRPHIFLLLEVSE 179

Query: 199 DTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEA 258
           D LVERVVGRRLDPVTGKIYH+KYSPPET EIAARLT+RFDDTEEKVKLRL THH NVE+
Sbjct: 180 DVLVERVVGRRLDPVTGKIYHLKYSPPETQEIAARLTQRFDDTEEKVKLRLNTHHQNVES 239

Query: 259 VLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSALGSLAA 303
           VLS+Y+D+TV++NG+V+KE+VFAQID ALT+L+E+RK+A GS+AA
Sbjct: 240 VLSMYKDITVKINGNVSKEEVFAQIDSALTSLIEERKAASGSVAA 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238822|ref|NP_199595.1| adenosine monophosphate kinase [Arabidopsis thaliana] gi|29427999|sp|Q9FIJ7.1|KADC2_ARATH RecName: Full=Probable adenylate kinase 2, chloroplastic; Short=AK 2; AltName: Full=ATP-AMP transphosphorylase 2; Flags: Precursor gi|10177920|dbj|BAB11331.1| unnamed protein product [Arabidopsis thaliana] gi|15146328|gb|AAK83647.1| AT5g47840/MCA23_18 [Arabidopsis thaliana] gi|24111333|gb|AAN46790.1| At5g47840/MCA23_18 [Arabidopsis thaliana] gi|332008196|gb|AED95579.1| adenosine monophosphate kinase [Arabidopsis thaliana]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/243 (73%), Positives = 213/243 (87%), Gaps = 2/243 (0%)

Query: 61  RHRRSPQSTN--SANFQVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118
           RHRR  +S +  +  FQ++A+   EPLKIMISGAPASGKGTQCELI  KYGLVHI+AGDL
Sbjct: 39  RHRRVSRSPSIIAPKFQIVAAEKSEPLKIMISGAPASGKGTQCELITHKYGLVHISAGDL 98

Query: 119 LRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQA 178
           LRAEIA+GSENG+RAKEHMEKGQLVPDEIVV MVK+RLSQ DS++ GWLLDGYPRS SQA
Sbjct: 99  LRAEIASGSENGRRAKEHMEKGQLVPDEIVVMMVKDRLSQTDSEQKGWLLDGYPRSASQA 158

Query: 179 TALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF 238
           TALK +GFQPDLFI+LEVPE+ L+ERVVGRRLDPVTGKIYH+KYSPPET+EIA RLT+RF
Sbjct: 159 TALKGFGFQPDLFIVLEVPEEILIERVVGRRLDPVTGKIYHLKYSPPETEEIAVRLTQRF 218

Query: 239 DDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSAL 298
           DDTEEK KLRLKTH+ NV  VLS+Y+D+T+++ G+ +KE+VFAQID +L+ LL++R +A 
Sbjct: 219 DDTEEKAKLRLKTHNQNVSDVLSMYDDITIKIEGNRSKEEVFAQIDSSLSELLQERNTAP 278

Query: 299 GSL 301
            SL
Sbjct: 279 SSL 281

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446345|ref|XP_004140932.1| PREDICTED: probable adenylate kinase 2, chloroplastic-like [Cucumis sativus] gi|449494096|ref|XP_004159446.1| PREDICTED: probable adenylate kinase 2, chloroplastic-like [Cucumis sativus]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/250 (74%), Positives = 212/250 (84%), Gaps = 6/250 (2%)

Query: 60  CRHRRSPQSTNSANFQ------VLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHI 113
           CR    P S  S + +      V A AT EPLKIMISGAPASGKGTQCELI +KYGLVHI
Sbjct: 41  CRALSLPYSNVSPSLKATLSPTVTAHATPEPLKIMISGAPASGKGTQCELITQKYGLVHI 100

Query: 114 AAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPR 173
           AAGDLLRAE+ +GS+NGK AKE+MEKGQLVP++IVV MVKERL QPDSQENGWLLDGYPR
Sbjct: 101 AAGDLLRAEVNSGSKNGKLAKEYMEKGQLVPNDIVVLMVKERLLQPDSQENGWLLDGYPR 160

Query: 174 SLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAAR 233
           S SQA ALK+ GF+PDLFILLEV E+ LVERVVGRRLDPVTGKIYH+KYSPP+T+E+AAR
Sbjct: 161 SYSQAIALKELGFEPDLFILLEVSEEILVERVVGRRLDPVTGKIYHLKYSPPDTEEVAAR 220

Query: 234 LTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQ 293
           LT+RFDDTEEKV+LRL+THH NVE VLS+Y+DVTV+VNG+ +K DVF QID  L  L+EQ
Sbjct: 221 LTQRFDDTEEKVRLRLQTHHQNVEDVLSMYQDVTVKVNGNASKTDVFDQIDRLLRGLIEQ 280

Query: 294 RKSALGSLAA 303
           RK+A+ SLAA
Sbjct: 281 RKAAIESLAA 290

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089470|emb|CBI39289.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/257 (71%), Positives = 216/257 (84%), Gaps = 9/257 (3%)

Query: 46  NHGLSLRYDGNPLRCRHRRSPQSTNSANFQVLASATVEPLKIMISGAPASGKGTQCELIK 105
           N  L LR  G        R+P  + S    V+ASA    LKIMISGAPASGKGTQCELI 
Sbjct: 113 NQTLILRRFGG-------RAP--SVSPTLVVVASANPNSLKIMISGAPASGKGTQCELIT 163

Query: 106 EKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG 165
           +K+ LVHIAAGDLLRAE+AAGSENG+RAKE MEKG+LVP+EIVV MV++RL QPDSQE G
Sbjct: 164 KKHDLVHIAAGDLLRAEVAAGSENGRRAKEFMEKGKLVPNEIVVMMVRDRLLQPDSQEKG 223

Query: 166 WLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPP 225
           WLLDGYPRS SQATALK++GF+PDLFILLEVPE+ LVERVVGRRLDPVTG+IYH+KYSPP
Sbjct: 224 WLLDGYPRSQSQATALKEFGFEPDLFILLEVPEEILVERVVGRRLDPVTGRIYHLKYSPP 283

Query: 226 ETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDV 285
           E +EIAARLT+RFDDTEEKVKLRL+THH NVEAVLSLY+D+T++VNG V+KE+VFAQID 
Sbjct: 284 ENEEIAARLTQRFDDTEEKVKLRLRTHHQNVEAVLSLYKDITIKVNGGVSKEEVFAQIDS 343

Query: 286 ALTNLLEQRKSALGSLA 302
           AL  L++Q+K+  G +A
Sbjct: 344 ALEKLVKQKKATAGPVA 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493416|ref|XP_003634590.1| PREDICTED: probable adenylate kinase 2, chloroplastic-like [Vitis vinifera]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/257 (71%), Positives = 216/257 (84%), Gaps = 9/257 (3%)

Query: 46  NHGLSLRYDGNPLRCRHRRSPQSTNSANFQVLASATVEPLKIMISGAPASGKGTQCELIK 105
           N  L LR  G        R+P  + S    V+ASA    LKIMISGAPASGKGTQCELI 
Sbjct: 55  NQTLILRRFGG-------RAP--SVSPTLVVVASANPNSLKIMISGAPASGKGTQCELIT 105

Query: 106 EKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG 165
           +K+ LVHIAAGDLLRAE+AAGSENG+RAKE MEKG+LVP+EIVV MV++RL QPDSQE G
Sbjct: 106 KKHDLVHIAAGDLLRAEVAAGSENGRRAKEFMEKGKLVPNEIVVMMVRDRLLQPDSQEKG 165

Query: 166 WLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPP 225
           WLLDGYPRS SQATALK++GF+PDLFILLEVPE+ LVERVVGRRLDPVTG+IYH+KYSPP
Sbjct: 166 WLLDGYPRSQSQATALKEFGFEPDLFILLEVPEEILVERVVGRRLDPVTGRIYHLKYSPP 225

Query: 226 ETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDV 285
           E +EIAARLT+RFDDTEEKVKLRL+THH NVEAVLSLY+D+T++VNG V+KE+VFAQID 
Sbjct: 226 ENEEIAARLTQRFDDTEEKVKLRLRTHHQNVEAVLSLYKDITIKVNGGVSKEEVFAQIDS 285

Query: 286 ALTNLLEQRKSALGSLA 302
           AL  L++Q+K+  G +A
Sbjct: 286 ALEKLVKQKKATAGPVA 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470697|ref|XP_003605633.1| Adenylate kinase [Medicago truncatula] gi|355506688|gb|AES87830.1| Adenylate kinase [Medicago truncatula] gi|388493354|gb|AFK34743.1| unknown [Medicago truncatula]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/229 (76%), Positives = 202/229 (88%)

Query: 75  QVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAK 134
           + +A    EPL +MISGAPASGKGTQC LI  KYGLVH+AAGDLLRAEI  GSENGKRAK
Sbjct: 78  KAVAKTVEEPLHVMISGAPASGKGTQCHLITNKYGLVHVAAGDLLRAEIETGSENGKRAK 137

Query: 135 EHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILL 194
           E+MEKGQLVPDEIVV MVK+RL +PDS ENGWLLDGYPRSLSQATALK+ GF+PD+FILL
Sbjct: 138 EYMEKGQLVPDEIVVMMVKDRLLKPDSVENGWLLDGYPRSLSQATALKELGFKPDIFILL 197

Query: 195 EVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHH 254
           EV ED LVERVVGRRLDPVTGKIYH+KYSPPET EIA RLT+RFDDTEEKVKLRL THH 
Sbjct: 198 EVSEDILVERVVGRRLDPVTGKIYHLKYSPPETKEIADRLTQRFDDTEEKVKLRLNTHHQ 257

Query: 255 NVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSALGSLAA 303
           NVEAVLS+Y+D+T+++NG+ ++++VFAQID ALT LLEQRK++  S+ A
Sbjct: 258 NVEAVLSMYKDITIKINGNSSQKEVFAQIDGALTTLLEQRKASSESMVA 306

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791885|ref|XP_002863827.1| hypothetical protein ARALYDRAFT_917605 [Arabidopsis lyrata subsp. lyrata] gi|297309662|gb|EFH40086.1| hypothetical protein ARALYDRAFT_917605 [Arabidopsis lyrata subsp. lyrata]

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 181/251 (72%), Positives = 210/251 (83%), Gaps = 11/251 (4%)

Query: 61  RHRRSPQSTNSANFQVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLR 120
           R  RSP S  +  FQ++A+   EPLKIMISGAPASGKGTQCELI  KYGLVHI+AGDLLR
Sbjct: 45  RVSRSP-SIIAPKFQIVAAEKSEPLKIMISGAPASGKGTQCELITHKYGLVHISAGDLLR 103

Query: 121 AEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 180
           AEIA+GSENG+RAKEHMEKGQLVPDEIVV MVK+RLSQ DS++NGWLLDGYPRS SQATA
Sbjct: 104 AEIASGSENGRRAKEHMEKGQLVPDEIVVMMVKDRLSQTDSEQNGWLLDGYPRSASQATA 163

Query: 181 LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD 240
           L+ +GFQPDLFI+LEVPED L+ERVVGRRLDPVTGKIYH+KYSPPET+EIAARLT+RFDD
Sbjct: 164 LRGFGFQPDLFIVLEVPEDILIERVVGRRLDPVTGKIYHLKYSPPETEEIAARLTQRFDD 223

Query: 241 TEEKVKLRLKTHHHNVEAVLSLYEDVTV---------EVNGSVNK-EDVFAQIDVALTNL 290
           TEEK KLRLKTH+ NV  VLS+Y+D+T+         ++N S  K E+V AQID  ++ L
Sbjct: 224 TEEKAKLRLKTHNQNVRDVLSMYDDITIKEHRSKFTFKLNHSWYKPEEVLAQIDTTVSKL 283

Query: 291 LEQRKSALGSL 301
           L+QR +A  SL
Sbjct: 284 LQQRNTASSSL 294

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135713|ref|XP_002327286.1| predicted protein [Populus trichocarpa] gi|222835656|gb|EEE74091.1| predicted protein [Populus trichocarpa]

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 184/272 (67%), Positives = 213/272 (78%), Gaps = 16/272 (5%)

Query: 5   ISSSSTVNLPMTVKTNSFSTSPSSSINSKHILPSQLPCTPTNHGLSLRYDGNPLRCRHRR 64
           ++++S+ +L + VK       P SS  S  +L S          LS  Y+ N   C    
Sbjct: 1   MAATSSCSLNLGVKGKGKPEQPFSSSKSSQLLFSS--------NLSFAYN-NTKYCLSLH 51

Query: 65  SPQSTNSANFQ-------VLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117
           S Q+  SA          V+AS+  E LKIMISGAPASGKGTQCELI +KYGLVHIAAGD
Sbjct: 52  SHQTLLSACLTKTKNSAFVVASSKPEHLKIMISGAPASGKGTQCELITKKYGLVHIAAGD 111

Query: 118 LLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ 177
           LLRAEIA+GSENGKRAKE+MEKGQLVP+EIVV MVK+RL Q DSQENGWLLDGYPRSLSQ
Sbjct: 112 LLRAEIASGSENGKRAKEYMEKGQLVPNEIVVMMVKDRLLQADSQENGWLLDGYPRSLSQ 171

Query: 178 ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKR 237
           ATALK++GFQPDLFI+LEV E+ LVERVVGRRLDPVTGKIYH+KYSPPET+EIAARLT+R
Sbjct: 172 ATALKEFGFQPDLFIVLEVNEEILVERVVGRRLDPVTGKIYHLKYSPPETEEIAARLTQR 231

Query: 238 FDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVE 269
           FDDTEEKVKLRL+THH NVEAVLS+YED+T++
Sbjct: 232 FDDTEEKVKLRLQTHHQNVEAVLSMYEDITLK 263

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115474427|ref|NP_001060810.1| Os08g0109300 [Oryza sativa Japonica Group] gi|42408375|dbj|BAD09526.1| putative adenylate kinase, chloroplast (ATP-AMP transphosphorylase) [Oryza sativa Japonica Group] gi|113622779|dbj|BAF22724.1| Os08g0109300 [Oryza sativa Japonica Group] gi|125559894|gb|EAZ05342.1| hypothetical protein OsI_27547 [Oryza sativa Indica Group] gi|215692712|dbj|BAG88132.1| unnamed protein product [Oryza sativa Japonica Group] gi|215694891|dbj|BAG90082.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 164/218 (75%), Positives = 191/218 (87%)

Query: 83  EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL 142
           +PLK+MI+GAPASGKGTQCELIK KYGLVHI+AGDLLRAEIAAGSENGKRAKE MEKGQL
Sbjct: 72  DPLKVMIAGAPASGKGTQCELIKSKYGLVHISAGDLLRAEIAAGSENGKRAKEFMEKGQL 131

Query: 143 VPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLV 202
           VPDEIVV MVKERL QPD+QE GWLLDGYPRS SQA AL+    +PD+FILL+VP++ LV
Sbjct: 132 VPDEIVVNMVKERLLQPDAQEKGWLLDGYPRSYSQAMALETLNIRPDIFILLDVPDELLV 191

Query: 203 ERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSL 262
           ERVVGRRLDPVTGKIYH+KYSPPE +EIA+RLT+RFDDTEEKVKLRL+TH+ NVE++LS+
Sbjct: 192 ERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLQTHYQNVESLLSI 251

Query: 263 YEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSALGS 300
           YEDV VEV G    +DVFA+ID  LT+ L+++   + S
Sbjct: 252 YEDVIVEVKGDALVDDVFAEIDKQLTSSLDKKTEMVAS 289

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561530|ref|XP_002521775.1| adenylate kinase, putative [Ricinus communis] gi|223538988|gb|EEF40585.1| adenylate kinase, putative [Ricinus communis]

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 171/228 (75%), Positives = 190/228 (83%), Gaps = 5/228 (2%)

Query: 42  CTPTNHGLSLRYDGNPLRCRHRRSPQSTNSANFQVLASATVEPLKIMISGAPASGKGTQC 101
           C   N  LSLR          R  P  T      V+A+A  EPLKIMISGAPASGKGTQC
Sbjct: 45  CCSNNCCLSLRSSRQGALISTRVVPNPT-----MVIAAAKPEPLKIMISGAPASGKGTQC 99

Query: 102 ELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161
           ELI +KYGLVHIAAGDLLR EIA+GSENGKRAKE+MEKGQLVP+EIVV MVKERL QPD+
Sbjct: 100 ELITKKYGLVHIAAGDLLRMEIASGSENGKRAKEYMEKGQLVPNEIVVMMVKERLLQPDA 159

Query: 162 QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVK 221
           QENGWLLDGYPRSLSQATA  +  FQPDLFILLEV E+ LVERVVGRRLDPVTG+IYH+K
Sbjct: 160 QENGWLLDGYPRSLSQATAFMELNFQPDLFILLEVDEEILVERVVGRRLDPVTGRIYHLK 219

Query: 222 YSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVE 269
           YSPPET+E+AARLT+RFDDTEEKVKLRL+THH NVEAVLS+YED+T++
Sbjct: 220 YSPPETEEVAARLTQRFDDTEEKVKLRLQTHHENVEAVLSIYEDITLK 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
TAIR|locus:2160942	283	AMK2 "adenosine monophosphate	0.854	0.915	0.701	2.3e-94
TAIR|locus:2182407	588	AT5G35170 [Arabidopsis thalian	0.762	0.392	0.581	1e-68
UNIPROTKB|P69441	214	adk [Escherichia coli K-12 (ta	0.636	0.901	0.429	3.6e-41
UNIPROTKB|E2QSP0	479	AK8 "Uncharacterized protein"	0.709	0.448	0.377	1.1e-37
UNIPROTKB|Q9KTB7	214	adk "Adenylate kinase" [Vibrio	0.587	0.831	0.437	1.9e-37
TIGR_CMR|VC_0986	214	VC_0986 "adenylate kinase" [Vi	0.587	0.831	0.437	1.9e-37
TIGR_CMR|CHY_1340	214	CHY_1340 "adenylate kinase" [C	0.666	0.943	0.413	8e-37
UNIPROTKB|Q47XA8	214	adk "Adenylate kinase" [Colwel	0.590	0.836	0.407	2.7e-36
TIGR_CMR|CPS_3900	214	CPS_3900 "adenylate kinase" [C	0.590	0.836	0.407	2.7e-36
TIGR_CMR|SO_2018	214	SO_2018 "adenylate kinase" [Sh	0.636	0.901	0.393	3.5e-36

TAIR|locus:2160942 AMK2 "adenosine monophosphate kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
 Identities = 183/261 (70%), Positives = 219/261 (83%)

Query:    43 TPTNHGLSLRYDGNPLRCRHRRSPQSTN--SANFQVLASATVEPLKIMISGAPASGKGTQ 100
             +P+    SL  D      RHRR  +S +  +  FQ++A+   EPLKIMISGAPASGKGTQ
Sbjct:    21 SPSRSSFSLSGDALHSLYRHRRVSRSPSIIAPKFQIVAAEKSEPLKIMISGAPASGKGTQ 80

Query:   101 CELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160
             CELI  KYGLVHI+AGDLLRAEIA+GSENG+RAKEHMEKGQLVPDEIVV MVK+RLSQ D
Sbjct:    81 CELITHKYGLVHISAGDLLRAEIASGSENGRRAKEHMEKGQLVPDEIVVMMVKDRLSQTD 140

Query:   161 SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHV 220
             S++ GWLLDGYPRS SQATALK +GFQPDLFI+LEVPE+ L+ERVVGRRLDPVTGKIYH+
Sbjct:   141 SEQKGWLLDGYPRSASQATALKGFGFQPDLFIVLEVPEEILIERVVGRRLDPVTGKIYHL 200

Query:   221 KYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVF 280
             KYSPPET+EIA RLT+RFDDTEEK KLRLKTH+ NV  VLS+Y+D+T+++ G+ +KE+VF
Sbjct:   201 KYSPPETEEIAVRLTQRFDDTEEKAKLRLKTHNQNVSDVLSMYDDITIKIEGNRSKEEVF 260

Query:   281 AQIDVALTNLLEQRKSALGSL 301
             AQID +L+ LL++R +A  SL
Sbjct:   261 AQIDSSLSELLQERNTAPSSL 281

GO:0004017 "adenylate kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2182407 AT5G35170 [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 135/232 (58%), Positives = 178/232 (76%)

Query:    63 RRSPQSTNSANFQVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122
             RR+ +S +++N Q+  S   EPLK+MISGAPASGKGTQCELI  K+GLVHI+ GDLLRAE
Sbjct:    59 RRTSRSFSTSNSQIRCSIN-EPLKVMISGAPASGKGTQCELIVHKFGLVHISTGDLLRAE 117

Query:   123 IAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALK 182
             +++G++ GKRAKE M  G LVPDEIV+ MV  RLS+ D++E+GWLLDG+PRS +QA +L 
Sbjct:   118 VSSGTDIGKRAKEFMNSGSLVPDEIVIAMVAGRLSREDAKEHGWLLDGFPRSFAQAQSLD 177

Query:   183 KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE 242
             K   +PD+FILL+VP++ L++R VGRRLDPVTGKIYH+K  PPE+DEI ARL  R DDTE
Sbjct:   178 KLNVKPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNYPPESDEIKARLVTRPDDTE 237

Query:   243 EKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQR 294
             EKVK RL+ +  N EA++S Y DV V+++ +  KE VF +    L+ +  +R
Sbjct:   238 EKVKARLQIYKQNSEAIISAYSDVMVKIDANRPKEVVFEETQTLLSQIQLKR 289

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA;ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

UNIPROTKB|P69441 adk [Escherichia coli K-12 (taxid:83333)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 85/198 (42%), Positives = 132/198 (66%)

Query:    85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
             ++I++ GAP +GKGTQ + I EKYG+  I+ GD+LRA + +GSE GK+AK+ M+ G+LV 
Sbjct:     1 MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60

Query:   145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
             DE+V+ +VKER++Q D + NG+LLDG+PR++ QA A+K+ G   D  +  +VP++ +V+R
Sbjct:    61 DELVIALVKERIAQEDCR-NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR 119

Query:   205 VVGRRLDPVTGKIYHVKYSPPET---DEIAAR-LTKRFDDTEEKVKLRLKTHHHNVEAVL 260
             +VGRR+   +G++YHVK++PP+    D++    LT R DD EE V+ RL  +H     ++
Sbjct:   120 IVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLI 179

Query:   261 SLYEDVTVEVNGSVNKED 278
               Y       N    K D
Sbjct:   180 GYYSKEAEAGNTKYAKVD 197

GO:0006412 "translation" evidence=IMP

GO:0005575 "cellular_component" evidence=IDA

GO:0006172 "ADP biosynthetic process" evidence=IMP

GO:0008654 "phospholipid biosynthetic process" evidence=IMP

GO:0032774 "RNA biosynthetic process" evidence=IMP

GO:0004017 "adenylate kinase activity" evidence=IEA;IDA;IMP

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0044209 "AMP salvage" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016208 "AMP binding" evidence=IDA

GO:0015951 "purine ribonucleotide interconversion" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E2QSP0 AK8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 82/217 (37%), Positives = 128/217 (58%)

Query:    78 ASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHM 137
             ++A   P ++++ G   SGK  Q  L+ +KYGLV++  G LL+  +A  S+ G+  + + 
Sbjct:   263 SNAPFTP-RVLLFGPMGSGKSLQAALLAQKYGLVNVHCGQLLKEAVAGESKFGELIQPYF 321

Query:   138 EKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVP 197
             +K   VPD I++ ++ +RLSQ D  + GW+L G+P+ L QA  L   G+QP+    L VP
Sbjct:   322 QKEMAVPDSIIMKVLSQRLSQQDCIQRGWVLHGFPKDLDQAHMLNSLGYQPNRVFFLNVP 381

Query:   198 EDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVE 257
              D+++ER+  RRLDPVTG+ YH+ Y PP T EI ARL +   DTEE++KL+L   + N  
Sbjct:   382 FDSVIERLTLRRLDPVTGERYHLMYKPPPTLEIQARLLQNPKDTEEQIKLKLDLFYRNFL 441

Query:   258 AVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQR 294
              +   Y   T  +N   +   VF  I+  + N L ++
Sbjct:   442 ELEEFYRQATT-INADQDPYTVFEYIESGIINPLPKK 477

GO:0021591 "ventricular system development" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q9KTB7 adk "Adenylate kinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 80/183 (43%), Positives = 120/183 (65%)

Query:    85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
             ++I++ GAP +GKGTQ + I EK+G+  I+ GD+LRA I AG+E GK+AK  ++ GQLV 
Sbjct:     1 MRIILLGAPGAGKGTQAQFIMEKFGIPQISTGDMLRAAIKAGTELGKQAKAVIDAGQLVS 60

Query:   145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
             D+I++ ++KER++Q D  E G+LLDG+PR++ QA  LK+ G   D  I  +V +D +VER
Sbjct:    61 DDIILGLIKERIAQADC-EKGFLLDGFPRTIPQADGLKEMGINVDYVIEFDVADDVIVER 119

Query:   205 VVGRRLDPVTGKIYHVKYSPPET---DEIAAR-LTKRFDDTEEKVKLRLKTHHHNVEAVL 260
             + GRR    +G+ YHV Y+PP+    D++    L  R DD EE V+ RL  +H     ++
Sbjct:   120 MAGRRAHLPSGRTYHVVYNPPKVEGKDDVTGEDLVIREDDKEETVRARLNVYHTQTAPLI 179

Query:   261 SLY 263
               Y
Sbjct:   180 EYY 182

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|VC_0986 VC_0986 "adenylate kinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 80/183 (43%), Positives = 120/183 (65%)

Query:    85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
             ++I++ GAP +GKGTQ + I EK+G+  I+ GD+LRA I AG+E GK+AK  ++ GQLV 
Sbjct:     1 MRIILLGAPGAGKGTQAQFIMEKFGIPQISTGDMLRAAIKAGTELGKQAKAVIDAGQLVS 60

Query:   145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
             D+I++ ++KER++Q D  E G+LLDG+PR++ QA  LK+ G   D  I  +V +D +VER
Sbjct:    61 DDIILGLIKERIAQADC-EKGFLLDGFPRTIPQADGLKEMGINVDYVIEFDVADDVIVER 119

Query:   205 VVGRRLDPVTGKIYHVKYSPPET---DEIAAR-LTKRFDDTEEKVKLRLKTHHHNVEAVL 260
             + GRR    +G+ YHV Y+PP+    D++    L  R DD EE V+ RL  +H     ++
Sbjct:   120 MAGRRAHLPSGRTYHVVYNPPKVEGKDDVTGEDLVIREDDKEETVRARLNVYHTQTAPLI 179

Query:   261 SLY 263
               Y
Sbjct:   180 EYY 182

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|CHY_1340 CHY_1340 "adenylate kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 88/213 (41%), Positives = 130/213 (61%)

Query:    85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
             +K++I G P +GKGTQ E I +++G+ HI+ GD+ RA +   +  G +AKE+M+KG+LVP
Sbjct:     1 MKLLIMGPPGAGKGTQAEKIVKEFGITHISTGDMFRAALKNQTPLGLKAKEYMDKGELVP 60

Query:   145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDT 200
             DEIV+ MV+ER+S PD  + G+LLDG+PR++ QA AL K     G   D  I +EVP + 
Sbjct:    61 DEIVIAMVEERISAPDCAK-GFLLDGFPRTIPQAEALDKKLAEMGITLDGVINIEVPREE 119

Query:   201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
             L+ER+ GRR+    G  YHVK++PP+     D     L +R DD+ E V  RL  +    
Sbjct:   120 LIERLTGRRVCRQCGATYHVKFNPPKVEGVCDACGGELYQRSDDSLETVSNRLDVYEAQT 179

Query:   257 EAVLSLYEDVTV--EVNGSVNKEDVFAQIDVAL 287
               +   Y    +   ++G+ + E+VFA I  AL
Sbjct:   180 APLKDYYAKTGLLKNIDGTKSIEEVFASIKNAL 212

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

UNIPROTKB|Q47XA8 adk "Adenylate kinase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 75/184 (40%), Positives = 125/184 (67%)

Query:    85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
             ++I++ GAP +GKGTQ + +  K+G+  I+ GD+LRA I AGSE G +AK  M+ GQLV 
Sbjct:     1 MRIVLLGAPGAGKGTQAQFLMAKFGIPQISTGDMLRAAIKAGSELGNKAKAVMDAGQLVS 60

Query:   145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
             D++++ +VKER++Q D +  G+LLDG+PR++ QA A+K+ G   D  +  +VP++ +VER
Sbjct:    61 DDLIIGLVKERVAQEDCKA-GFLLDGFPRTIPQADAMKESGIVVDHVLEFDVPDEVIVER 119

Query:   205 VVGRRLDPVTGKIYHVKYSPPET---DEIAAR-LTKRFDDTEEKVKLRLKTHHHNVEAVL 260
             + GRR+   +G++YH+ Y+PP+    D+++   L+ R DD E  V+ RL  +H   + ++
Sbjct:   120 MAGRRVHSGSGRVYHLVYNPPKVEGKDDVSGDDLSIRPDDEEATVRKRLAIYHEQTKPLV 179

Query:   261 SLYE 264
               Y+
Sbjct:   180 DFYQ 183

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|CPS_3900 CPS_3900 "adenylate kinase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 75/184 (40%), Positives = 125/184 (67%)

Query:    85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
             ++I++ GAP +GKGTQ + +  K+G+  I+ GD+LRA I AGSE G +AK  M+ GQLV 
Sbjct:     1 MRIVLLGAPGAGKGTQAQFLMAKFGIPQISTGDMLRAAIKAGSELGNKAKAVMDAGQLVS 60

Query:   145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
             D++++ +VKER++Q D +  G+LLDG+PR++ QA A+K+ G   D  +  +VP++ +VER
Sbjct:    61 DDLIIGLVKERVAQEDCKA-GFLLDGFPRTIPQADAMKESGIVVDHVLEFDVPDEVIVER 119

Query:   205 VVGRRLDPVTGKIYHVKYSPPET---DEIAAR-LTKRFDDTEEKVKLRLKTHHHNVEAVL 260
             + GRR+   +G++YH+ Y+PP+    D+++   L+ R DD E  V+ RL  +H   + ++
Sbjct:   120 MAGRRVHSGSGRVYHLVYNPPKVEGKDDVSGDDLSIRPDDEEATVRKRLAIYHEQTKPLV 179

Query:   261 SLYE 264
               Y+
Sbjct:   180 DFYQ 183

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|SO_2018 SO_2018 "adenylate kinase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 78/198 (39%), Positives = 127/198 (64%)

Query:    85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
             ++I++ GAP +GKGTQ + I E+YG+  I+ GD+LRA + AG+  G  AK+ M+ GQLV 
Sbjct:     1 MRIILLGAPGAGKGTQAQFIMEQYGIPQISTGDMLRAAVKAGTPLGLEAKKVMDAGQLVS 60

Query:   145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
             D++++ +VKER++Q D  + G+LLDG+PR++ QA A+   G   D  I ++VP++ +V+R
Sbjct:    61 DDLIIGLVKERIAQDDCAK-GFLLDGFPRTIPQADAMAANGISIDHVIEIDVPDEEIVKR 119

Query:   205 VVGRRLDPVTGKIYHVKYSPPET---DEIAAR-LTKRFDDTEEKVKLRLKTHHHNVEAVL 260
             + GRR+ P +G++YHV ++PP+    D++    L  R DD E  V+ RL  +H   + ++
Sbjct:   120 MSGRRVHPGSGRVYHVVFNPPKVEGKDDVTGEDLAIRPDDEEATVRKRLGIYHEQTKPLV 179

Query:   261 SLYEDVTVEVNGSVNKED 278
               Y  V    N   +K D
Sbjct:   180 EYYGKVAAAGNTQYHKFD 197

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FIJ7	KADC2_ARATH	2, ., 7, ., 4, ., 3	0.7366	0.7953	0.8515	yes	no
P43188	KADC_MAIZE	2, ., 7, ., 4, ., 3	0.7194	0.7293	0.9954	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.963
3rd Layer	2.7.4.3	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	303
PLN02842	505	PLN02842, PLN02842, nucleotide kinase	1e-106
TIGR01351	210	TIGR01351, adk, adenylate kinase	6e-90
pfam00406	186	pfam00406, ADK, Adenylate kinase	4e-83
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	1e-80
PRK00279	215	PRK00279, adk, adenylate kinase; Reviewed	4e-79
PRK14530	215	PRK14530, PRK14530, adenylate kinase; Provisional	6e-52
COG0563	178	COG0563, Adk, Adenylate kinase and related kinases	2e-51
TIGR01360	188	TIGR01360, aden_kin_iso1, adenylate kinase, isozym	7e-47
PLN02674	244	PLN02674, PLN02674, adenylate kinase	3e-41
PRK02496	184	PRK02496, adk, adenylate kinase; Provisional	7e-40
PRK14529	223	PRK14529, PRK14529, adenylate kinase; Provisional	3e-38
PTZ00088	229	PTZ00088, PTZ00088, adenylate kinase 1; Provisiona	2e-37
PRK14532	188	PRK14532, PRK14532, adenylate kinase; Provisional	2e-34
PRK14528	186	PRK14528, PRK14528, adenylate kinase; Provisional	1e-32
PRK14531	183	PRK14531, PRK14531, adenylate kinase; Provisional	1e-32
PLN02459	261	PLN02459, PLN02459, probable adenylate kinase	2e-32
PRK14526	211	PRK14526, PRK14526, adenylate kinase; Provisional	2e-32
PRK14527	191	PRK14527, PRK14527, adenylate kinase; Provisional	5e-31
TIGR01359	183	TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family	2e-30
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	9e-30
PLN02200	234	PLN02200, PLN02200, adenylate kinase family protei	2e-26
PRK04182	180	PRK04182, PRK04182, cytidylate kinase; Provisional	3e-09
TIGR02173	171	TIGR02173, cyt_kin_arch, cytidylate kinase, putati	1e-08
pfam13207	114	pfam13207, AAA_17, AAA domain	1e-08
COG1102	179	COG1102, Cmk, Cytidylate kinase [Nucleotide transp	3e-08
pfam13238	128	pfam13238, AAA_18, AAA domain	7e-06
COG0237	201	COG0237, CoaE, Dephospho-CoA kinase [Coenzyme meta	1e-04
pfam05191	36	pfam05191, ADK_lid, Adenylate kinase, active site	1e-04
pfam02223	186	pfam02223, Thymidylate_kin, Thymidylate kinase	8e-04
cd02020	147	cd02020, CMPK, Cytidine monophosphate kinase (CMPK	0.001
pfam13671	143	pfam13671, AAA_33, AAA domain	0.001

>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase

 Score =  318 bits (816), Expect = e-106
 Identities = 127/203 (62%), Positives = 162/203 (79%)

Query: 88  MISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI 147
           MISGAPASGKGTQCELI  K+GLVHI+ GDLLRAE++AG++ GKRAKE M  G+LVPDEI
Sbjct: 1   MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEI 60

Query: 148 VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVG 207
           V+ MV  RLS+ D++E GWLLDGYPRS +QA +L+K   +PD+FILL+VP++ L++R VG
Sbjct: 61  VIAMVTGRLSREDAKEKGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVG 120

Query: 208 RRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVT 267
           RRLDPVTGKIYH+K  PPE++EI ARL  R DDTEEKVK RL+ +  N EA+LS Y D+ 
Sbjct: 121 RRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKARLQIYKKNAEAILSTYSDIM 180

Query: 268 VEVNGSVNKEDVFAQIDVALTNL 290
           V+++G+  KE VF +I   L+ +
Sbjct: 181 VKIDGNRPKEVVFEEISSLLSQI 203

Length = 505

>gnl|CDD|233369 TIGR01351, adk, adenylate kinase

 Score =  266 bits (682), Expect = 6e-90
 Identities = 101/209 (48%), Positives = 144/209 (68%), Gaps = 7/209 (3%)

Query: 86  KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD 145
           ++++ G P SGKGTQ + I EKYGL HI+ GDLLRAEI AG+  GK+AKE+MEKG+LVPD
Sbjct: 1   RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPD 60

Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKY-GFQPDLFILLEVPEDTLVER 204
           EIV  +VKERL+Q    ENG++LDG+PR+LSQA AL      + D  I L+VP++ LVER
Sbjct: 61  EIVNQLVKERLTQNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVER 120

Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           + GRR+ P  G++YH+K++PP+     D     L +R DDTEE VK RL+ +    E ++
Sbjct: 121 LSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLI 180

Query: 261 SLYED--VTVEVNGSVNKEDVFAQIDVAL 287
             Y+   + V+++G+   ++V+ +I  AL
Sbjct: 181 DYYKKRGILVQIDGNGPIDEVWKRILEAL 209

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 210

>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase

 Score =  247 bits (634), Expect = 4e-83
 Identities = 90/183 (49%), Positives = 131/183 (71%), Gaps = 8/183 (4%)

Query: 89  ISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIV 148
           + G P +GKGTQ E I +KYG+ H++ GDLLRAE+ +G+E GK AKE+M+KG+LVPDE+V
Sbjct: 1   LLGPPGAGKGTQAERIVQKYGIPHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVV 60

Query: 149 VTMVKERLSQPDSQENGWLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERV 205
           + +VKERL Q D  +NG+LLDG+PR++ QA AL++   YG + D  I  +VP++ LVER+
Sbjct: 61  IGLVKERLEQND-CKNGFLLDGFPRTVPQAEALEEMLEYGIKLDYVIEFDVPDEVLVERL 119

Query: 206 VGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLS 261
            GRR+ P +G+ YH++++PP+     D     L++R DD EE VK RL+T+H   E V+ 
Sbjct: 120 TGRRIHPNSGRSYHLEFNPPKVPGKDDVTGEPLSQRSDDNEETVKKRLETYHKQTEPVID 179

Query: 262 LYE 264
            Y+
Sbjct: 180 YYK 182

Length = 186

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score =  242 bits (619), Expect = 1e-80
 Identities = 89/199 (44%), Positives = 139/199 (69%), Gaps = 10/199 (5%)

Query: 86  KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD 145
           +I++ G P SGKGTQ E + +KYGL HI+ GDLLR EIA+G+E GK+AKE+++ G+LVPD
Sbjct: 1   RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPD 60

Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKY---GFQPDLFILLEVPEDTLV 202
           EIV+ ++KERL +PD  + G++LDG+PR++ QA AL +    G +PD  I L+VP++ L+
Sbjct: 61  EIVIKLLKERLKKPD-CKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLI 119

Query: 203 ERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSL 262
           ER++GRR+ PV+G++YH+     + D     L++R DD EE +K RL+ +      ++  
Sbjct: 120 ERILGRRICPVSGRVYHL----GKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDY 175

Query: 263 YE--DVTVEVNGSVNKEDV 279
           Y+     VE++GS + ++V
Sbjct: 176 YKKKGKLVEIDGSGDIDEV 194

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed

 Score =  238 bits (611), Expect = 4e-79
 Identities = 96/216 (44%), Positives = 145/216 (67%), Gaps = 11/216 (5%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           +++++ G P +GKGTQ + I EKYG+ HI+ GD+LRA + AG+E GK AK +M+ G+LVP
Sbjct: 1   MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVP 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFILLEVPEDT 200
           DEIV+ +VKERL+QPD  +NG+LLDG+PR++ QA AL    K+ G + D  I ++VP++ 
Sbjct: 61  DEIVIGLVKERLAQPDC-KNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEE 119

Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
           LVER+ GRR+ P  G+ YHVK++PP+     D     L +R DD EE V+ RL+ +H   
Sbjct: 120 LVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQT 179

Query: 257 EAVLSLYEDVT--VEVNGSVNKEDVFAQIDVALTNL 290
             ++  Y+      +++G+ + ++VFA I  AL  L
Sbjct: 180 APLIDYYKKKGKLKKIDGTGSIDEVFADILKALGKL 215

Length = 215

>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional

 Score =  169 bits (430), Expect = 6e-52
 Identities = 85/212 (40%), Positives = 124/212 (58%), Gaps = 15/212 (7%)

Query: 86  KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRA----EIAAGSENGKRAKEHMEKGQ 141
           +I++ GAP +GKGTQ   + E++G+ H+  GD LRA    +I+          E+M+ G+
Sbjct: 5   RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGE 64

Query: 142 LVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTL 201
           LVPD +V  +V+E LS  D    G++LDGYPR+L QA  L+      D+ + L+V E+ L
Sbjct: 65  LVPDAVVNEIVEEALSDAD----GFVLDGYPRNLEQAEYLESIT-DLDVVLYLDVSEEEL 119

Query: 202 VERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVE 257
           V+R+ GRR+ P  G  YHV+++ PE     DE    L +R DDTEE V+ RL     N E
Sbjct: 120 VDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTE 179

Query: 258 AVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 287
            V+  Y D  V VEV+G    ++V+A I  A+
Sbjct: 180 PVIEHYRDQGVLVEVDGEQTPDEVWADIQDAI 211

Length = 215

>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]

 Score =  167 bits (424), Expect = 2e-51
 Identities = 82/207 (39%), Positives = 122/207 (58%), Gaps = 34/207 (16%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           ++I+I G P +GK T  + + +K GL H+  GD+LRA IA  +E G+  K++++KG+LVP
Sbjct: 1   MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVP 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDT 200
           DEIV  +VKERL + D  + G++LDG+PR+L QA ALK+     G + D+ I L+VPE+ 
Sbjct: 61  DEIVNGLVKERLDEADC-KAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEEL 119

Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           L+ER++GRR+                          R DD EE VK RLK +H     ++
Sbjct: 120 LLERLLGRRV--------------------------REDDNEETVKKRLKVYHEQTAPLI 153

Query: 261 SLYEDVTVEVNGSVNKEDVFAQIDVAL 287
             Y  VT++ +G +  E+V A I  AL
Sbjct: 154 EYY-SVTIDGSGEI--EEVLADILKAL 177

Length = 178

>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily

 Score =  155 bits (394), Expect = 7e-47
 Identities = 74/203 (36%), Positives = 110/203 (54%), Gaps = 25/203 (12%)

Query: 87  IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
           I I G P SGKGTQCE I EKYG  H++ GDLLRAE+A+GSE GK+ +  ME G LVP +
Sbjct: 6   IFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLD 65

Query: 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV 206
            V+ ++K+ +        G+L+DGYPR + Q    ++    P L +  +  EDT+V+R++
Sbjct: 66  TVLDLLKDAMVAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLL 125

Query: 207 GRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE-- 264
            R                       A  + R DD E+ +K RL+T++   E V++ YE  
Sbjct: 126 KR-----------------------AETSGRVDDNEKTIKKRLETYYKATEPVIAYYETK 162

Query: 265 DVTVEVNGSVNKEDVFAQIDVAL 287
               ++N     +DVF Q+  A+
Sbjct: 163 GKLRKINAEGTVDDVFLQVCTAI 185

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. Length = 188

>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase

 Score =  142 bits (360), Expect = 3e-41
 Identities = 80/213 (37%), Positives = 128/213 (60%), Gaps = 11/213 (5%)

Query: 86  KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD 145
           ++++ G P SGKGTQ  +IK++Y L H+A GD+LRA +AA +  G +AKE M+KG+LV D
Sbjct: 33  RLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 92

Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA----LKKYGFQPDLFILLEVPEDTL 201
           ++VV ++ E + +P  Q+ G++LDG+PR++ QA      L K G + D  +   + +  L
Sbjct: 93  DLVVGIIDEAMKKPSCQK-GFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAIL 151

Query: 202 VERVVGRRLDPVTGKIYHVKYSPPET---DEIAAR-LTKRFDDTEEKVKLRLKTHHHNVE 257
            ER+ GR + P +G+ YH K++PP+    D++    L +R DDT   +K RL+  H   E
Sbjct: 152 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 211

Query: 258 AVLSLYEDVTVEVNGSVNK--EDVFAQIDVALT 288
            V+  Y    V  N    K  ++V A++  AL+
Sbjct: 212 PVIDYYAKKGVVANLHAEKPPKEVTAEVQKALS 244

Length = 244

>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional

 Score =  137 bits (347), Expect = 7e-40
 Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 34/204 (16%)

Query: 91  GAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVT 150
           G P +GKGTQ  ++ E   + HI+ GD+LR  I   +  G +A+ +M+KG+LVPD++V+ 
Sbjct: 8   GPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLD 67

Query: 151 MVKERLSQPDSQENGWLLDGYPRSLSQATALKKY----GFQPDLFILLEVPEDTLVERVV 206
           +V+ERL QPD+  NGW+LDG+PR ++QA  L +     G   +  + L+VP+D +VER++
Sbjct: 68  LVQERLQQPDAA-NGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLL 126

Query: 207 GRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED- 265
            R                            R DDTEE ++ RL+ +      ++  Y D 
Sbjct: 127 AR---------------------------GRKDDTEEVIRRRLEVYREQTAPLIDYYRDR 159

Query: 266 -VTVEVNGSVNKEDVFAQIDVALT 288
              + ++G+ + E V  ++  AL 
Sbjct: 160 QKLLTIDGNQSVEAVTTELKAALA 183

Length = 184

>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional

 Score =  134 bits (339), Expect = 3e-38
 Identities = 59/130 (45%), Positives = 84/130 (64%), Gaps = 6/130 (4%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + I+I G   SGKGTQ  L+K+KY L HI +G + R  I  G+E GK+AKE++++G LVP
Sbjct: 1   MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVP 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQA----TALKKYGFQPDLFILLEVPEDT 200
           D+I + M+ E L Q    +NGWLLDG+PR+  QA     AL+K G + D  I + +P + 
Sbjct: 61  DDITIPMILETLKQDG--KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREV 118

Query: 201 LVERVVGRRL 210
              R++GRRL
Sbjct: 119 AKNRIMGRRL 128

Length = 223

>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional

 Score =  132 bits (334), Expect = 2e-37
 Identities = 67/197 (34%), Positives = 110/197 (55%), Gaps = 16/197 (8%)

Query: 84  PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV 143
           PLKI++ GAP  GKGT  E++ +K  L HI  G++LR EI A +  GK  ++ +  G LV
Sbjct: 6   PLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLV 65

Query: 144 PDEIVVTMVKERLSQ-PDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLV 202
           PD +V+ +VK+ +++  D    G++LDG+PR+L Q   L K     DLF+ + +P + L+
Sbjct: 66  PDNLVIAIVKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKIT-NIDLFVNIYLPRNILI 124

Query: 203 ERVVGRRLDPVTGKIY---HVKYSP-------PETDEIAA----RLTKRFDDTEEKVKLR 248
           ++++GRR+     + +   H++  P       P  D        +L KR DDTEE V  R
Sbjct: 125 KKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGCKGNPKLQKRSDDTEEIVAHR 184

Query: 249 LKTHHHNVEAVLSLYED 265
           L T+      ++  +++
Sbjct: 185 LNTYESTNSPIIQFFKN 201

Length = 229

>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional

 Score =  123 bits (311), Expect = 2e-34
 Identities = 73/210 (34%), Positives = 113/210 (53%), Gaps = 30/210 (14%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + +++ G PA+GKGTQ + + E+ G+V ++ GD+LRA IA+GSE G+R K  M++G+LV 
Sbjct: 1   MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVS 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKY----GFQPDLFILLEVPEDT 200
           DEIV+ +++ERL +      G + DG+PR+++QA AL K     G + D+ I L+V ++ 
Sbjct: 61  DEIVIALIEERLPE-AEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEA 119

Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           L+ER+V R  +                         R DD  E    RL  ++     +L
Sbjct: 120 LIERIVKRFEE-----------------------QGRPDDNPEVFVTRLDAYNAQTAPLL 156

Query: 261 SLYED--VTVEVNGSVNKEDVFAQIDVALT 288
             Y       EV+G  + E V A ID AL 
Sbjct: 157 PYYAGQGKLTEVDGMGSIEAVAASIDAALE 186

Length = 188

>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional

 Score =  118 bits (298), Expect = 1e-32
 Identities = 67/204 (32%), Positives = 107/204 (52%), Gaps = 30/204 (14%)

Query: 86  KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD 145
            I+  G P +GKGTQ +++ E+  +  I+ GD+LR  +   +  G  AK +M+ G LVPD
Sbjct: 3   NIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPD 62

Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA----LKKYGFQPDLFILLEVPEDTL 201
            +V+ ++K+R+ + D + NG+LLDG+PR++ QA A    LK  G   D  I LEVP+  L
Sbjct: 63  SVVIGIIKDRIREADCK-NGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGEL 121

Query: 202 VERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLS 261
           ++R++GR                       A +  R DD E  +K RL  ++     +L 
Sbjct: 122 LKRLLGR-----------------------AEIEGRADDNEATIKNRLDNYNKKTLPLLD 158

Query: 262 LY--EDVTVEVNGSVNKEDVFAQI 283
            Y  +    +VNG  + E+V + I
Sbjct: 159 FYAAQKKLSQVNGVGSLEEVTSLI 182

Length = 186

>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional

 Score =  118 bits (298), Expect = 1e-32
 Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 39/210 (18%)

Query: 86  KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD 145
           +++  G P +GKGTQ   +   +GL H++ GDLLR+E+AAGS  G+ A+  M +G+LV D
Sbjct: 4   RLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSD 63

Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGF---QP-DLFILLEVPEDTL 201
            +V+ +V+ +L   +S   GWLLDG+PR+++QA AL+       QP +  +LLE+ +  L
Sbjct: 64  ALVLAIVESQLKALNSG--GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVL 121

Query: 202 VERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLS 261
           +ER++ R                            R DD E  ++ RL+ +      ++ 
Sbjct: 122 IERLLAR---------------------------GRADDNEAVIRNRLEVYREKTAPLID 154

Query: 262 LYED----VTVEVNGSVNKEDVFAQIDVAL 287
            Y       +VE  GS+  E +  +I+  L
Sbjct: 155 HYRQRGLLQSVEAQGSI--EAITERIEKVL 182

Length = 183

>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase

 Score =  120 bits (302), Expect = 2e-32
 Identities = 68/190 (35%), Positives = 105/190 (55%), Gaps = 17/190 (8%)

Query: 91  GAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVT 150
           G P  GKGT    + +  G+ HIA GDL+R EI +    G + KE + +G+LVPDEI+ +
Sbjct: 36  GCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFS 95

Query: 151 MVKERLSQPDSQ-ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209
           ++ +RL   + + E+G++LDG+PR++ QA  L+      DL + L++ E+ LVE+ +GRR
Sbjct: 96  LLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGVT-DIDLVVNLKLREEVLVEKCLGRR 154

Query: 210 LDPVTGKIYHVK-------------YSPP--ETDEIAARLTKRFDDTEEKVKLRLKTHHH 254
           +    GK ++V                PP     E A++L  R DDTEE VK RL+ +  
Sbjct: 155 ICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKARLRVYKE 214

Query: 255 NVEAVLSLYE 264
             + V   Y 
Sbjct: 215 ESQPVEDFYR 224

Length = 261

>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional

 Score =  118 bits (298), Expect = 2e-32
 Identities = 66/213 (30%), Positives = 114/213 (53%), Gaps = 13/213 (6%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           +K++  G P SGKGT  +++  +    HI+ GDL R  I   +  GK  K+ +E GQLVP
Sbjct: 1   MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVP 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFIL-LEVPEDTLVE 203
           D I + +V+++++   + +N ++LDG+PR+++QA AL K  F P++ I+   + E+ L++
Sbjct: 61  DSITIKIVEDKINTIKNNDN-FILDGFPRNINQAKALDK--FLPNIKIINFLIDEELLIK 117

Query: 204 RVVGRRLDPVTGKIYHVKYSPPETDEI----AARLTKRFDDTEEKVKLRLKTHHHNVEAV 259
           R+ GRR+      I+++   P +   I       L +R DD EE +K RL+ +    + +
Sbjct: 118 RLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPL 177

Query: 260 LSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE 292
           +  Y          +N  D    ID     L+E
Sbjct: 178 IEFYSK-----CNRLNNIDASKDIDEVKKKLIE 205

Length = 211

>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional

 Score =  114 bits (287), Expect = 5e-31
 Identities = 67/203 (33%), Positives = 108/203 (53%), Gaps = 31/203 (15%)

Query: 91  GAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVT 150
           G P +GKGTQ E + ++ GL  ++ GD+LR  +A G+E G+RAK  ME G LVPDE+++ 
Sbjct: 13  GPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILA 72

Query: 151 MVKERLSQPDSQENGWLLDGYPRSLSQATALKKY----GFQPDLFILLEVPEDTLVERVV 206
           ++++ L+    +    + DG+PR+L+QA AL +     G +    +LLEVP++ L+ R+V
Sbjct: 73  LIRDELA--GMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIV 130

Query: 207 GRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDV 266
            R                       AR   R DD EE V+ R + +    + ++  YE  
Sbjct: 131 ER-----------------------ARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEAR 167

Query: 267 TV--EVNGSVNKEDVFAQIDVAL 287
                V+G    ++V+A+I  AL
Sbjct: 168 GHLKRVDGLGTPDEVYARILKAL 190

Length = 191

>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family

 Score =  112 bits (282), Expect = 2e-30
 Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 30/199 (15%)

Query: 91  GAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVT 150
           G P SGKGTQC  I E +G  H++AGDLLRAEI +GSENG+  +  ++ G++VP E+ V 
Sbjct: 6   GGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVK 65

Query: 151 MVKERLSQPDSQENGWLLDGYPRS---LSQATALKKYGFQPDLFILLEVPEDTLVERVVG 207
           ++K  +         +L+DG+PR+   L     L          +  + PE+ +++R++ 
Sbjct: 66  LLKNAIQA--DGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLK 123

Query: 208 RRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE--D 265
           R                        + + R DD  E +K R +T++     V+  YE   
Sbjct: 124 R-----------------------GQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKG 160

Query: 266 VTVEVNGSVNKEDVFAQID 284
              E+N   + E+VF  ++
Sbjct: 161 KVKEINAEGSVEEVFEDVE 179

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. Length = 183

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score =  114 bits (288), Expect = 9e-30
 Identities = 71/210 (33%), Positives = 117/210 (55%), Gaps = 26/210 (12%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           +++++ G P +GKGTQ + + ++YG+V ++ GD+LRA +AAG+  G +AK+ M  G LVP
Sbjct: 1   MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVP 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA----LKKYGFQPDLFILLEVPEDT 200
           DE+VV ++ +R+ QPD+  NG++LDG+PR++ QA A    LK    + D  + L V E  
Sbjct: 61  DEVVVGIISDRIEQPDAA-NGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGA 119

Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTK-RFDDTEEKVKLRLKTHHHNVEAV 259
           L+ RV  R                    E+ AR  + R DDT E +  RL ++    E +
Sbjct: 120 LLARVETR------------------VAEMRARGEEVRADDTPEVLAKRLASYRAQTEPL 161

Query: 260 LSLYED--VTVEVNGSVNKEDVFAQIDVAL 287
           +  Y +    + V+G +  ++V  +I   L
Sbjct: 162 VHYYSEKRKLLTVDGMMTIDEVTREIGRVL 191

Length = 333

>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein

 Score =  103 bits (258), Expect = 2e-26
 Identities = 51/139 (36%), Positives = 85/139 (61%), Gaps = 3/139 (2%)

Query: 84  PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV 143
           P    + G P SGKGTQCE I E +G  H++AGDLLR EIA+ SE+G      +++G++V
Sbjct: 43  PFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIV 102

Query: 144 PDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKY-GFQPDLFILLEVPEDTLV 202
           P E+ V ++++ +   D+  N +L+DG+PR+     A ++  G +P++ +  + PE+ +V
Sbjct: 103 PSEVTVKLIQKEMESSDN--NKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMV 160

Query: 203 ERVVGRRLDPVTGKIYHVK 221
           +RV+ R    V   I  +K
Sbjct: 161 KRVLNRNQGRVDDNIDTIK 179

Length = 234

>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional

 Score = 55.2 bits (134), Expect = 3e-09
 Identities = 41/136 (30%), Positives = 57/136 (41%), Gaps = 36/136 (26%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA--G---SENGKRAKEHMEK 139
           + I ISG P SGK T   L+ EK GL H++AG++ R E+A   G    E  K A+E  E 
Sbjct: 1   MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFR-ELAKERGMSLEEFNKYAEEDPEI 59

Query: 140 GQLVPDEIVVTMVKE-------RLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFI 192
            + +    +    KE       RL+       GW+   Y                 DL I
Sbjct: 60  DKEIDRRQLEIAEKEDNVVLEGRLA-------GWMAKDY----------------ADLKI 96

Query: 193 LLEVPEDTLVERVVGR 208
            L+ P +   ER+  R
Sbjct: 97  WLKAPLEVRAERIAER 112

Length = 180

>gnl|CDD|233761 TIGR02173, cyt_kin_arch, cytidylate kinase, putative

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 6/93 (6%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAG-----SENGKRAKEHMEK 139
           + I ISG P SGK T  +++ EK  L  I+AGD+ R E+AA       E    A+E+ E 
Sbjct: 1   MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFR-ELAAKMGLDLIEFLNYAEENPEI 59

Query: 140 GQLVPDEIVVTMVKERLSQPDSQENGWLLDGYP 172
            + +   I    +KE+    +S+  GW++  Y 
Sbjct: 60  DKKIDRRIHEIALKEKNVVLESRLAGWIVREYA 92

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. Length = 171

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 51.5 bits (123), Expect = 1e-08
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 17/126 (13%)

Query: 86  KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD 145
            I+I+G P SGK T  + + EK G+  I+  DLLR          +     ++ G+L   
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLR----------EEGLAELDDGELDDI 50

Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV 205
           +I + +++E L +    +  W++DG   S    T   +     DL + L++P      R+
Sbjct: 51  DIDLELLEEILDELA--KQEWVIDGVRES----TLELRLEE-ADLVVFLDLPLPACRFRL 103

Query: 206 VGRRLD 211
           + RRL 
Sbjct: 104 LKRRLQ 109

Length = 114

>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 23/129 (17%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAG-----SENGKRAKEHMEK 139
           + I ISG P SGK T    + E  GL  ++AG + R E+A        E  + A+E  E 
Sbjct: 1   MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFR-EMARERGMSLEEFSRYAEEDPEI 59

Query: 140 GQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPED 199
            + + D     + KE     + +  GW++  Y                 DL I L+ P +
Sbjct: 60  DKEI-DRRQKELAKEGNVVLEGRLAGWIVREY----------------ADLKIWLKAPLE 102

Query: 200 TLVERVVGR 208
              ER+  R
Sbjct: 103 VRAERIAKR 111

Length = 179

>gnl|CDD|222000 pfam13238, AAA_18, AAA domain

 Score = 44.4 bits (105), Expect = 7e-06
 Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 15/128 (11%)

Query: 87  IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE-IAAGSENGKRAKEH-MEKGQLVP 144
           I+I+G P SGK T  + + E+ G V     DL +   +    +     +   +++ +L  
Sbjct: 1   ILITGTPGSGKTTLAKELAERLGDVLR---DLAKENGLVLELDEEITDESKRLDEDKL-- 55

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
            +++  +  E++ +  ++    ++DG   +  +    K        F++L    + L+ER
Sbjct: 56  AKLLDKL--EKIIEELAEGENVIIDG-HLAELELERFKDLV-----FVVLRADPEELLER 107

Query: 205 VVGRRLDP 212
           +  R    
Sbjct: 108 LKKRGYSE 115

Length = 128

>gnl|CDD|223315 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism]

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 43/171 (25%), Positives = 66/171 (38%), Gaps = 17/171 (9%)

Query: 83  EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL 142
             L I ++G   SGK T  +++ E  G   I A D+ R  +  G E  +   E      L
Sbjct: 1   MMLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEIL 59

Query: 143 VPDEIVVTMVKERLSQ---PDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPED 199
             D     + + +L +    D +     L+     L +A            +++LE+P  
Sbjct: 60  DED---GGLDRRKLREKVFNDPEARLK-LEKILHPLIRAEIKVVIDGARSPYVVLEIP-- 113

Query: 200 TLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLK 250
            L E    +  D    K+  V Y+PPE      RL KR    EE  + RL 
Sbjct: 114 LLFEAGGEKYFD----KVIVV-YAPPEI--RLERLMKRDGLDEEDAEARLA 157

Length = 201

>gnl|CDD|218488 pfam05191, ADK_lid, Adenylate kinase, active site lid

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)

Query: 208 RRLDPVTGKIYHVKYSPPETDEI----AARLTKRFD 239
           RR+ P  G+IYHVK++PP+ + +       L +R D
Sbjct: 1   RRVCPSCGRIYHVKFNPPKVEGVCDKCGGELVQRDD 36

Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain, is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function. Length = 36

>gnl|CDD|216936 pfam02223, Thymidylate_kin, Thymidylate kinase

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 25/140 (17%)

Query: 95  SGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVK- 153
           +GK TQ EL+KE+     I    +L  E   G+  G++ +E + + + +       +   
Sbjct: 7   AGKTTQAELLKERLKEQGIKV--VLTRE-PGGTPIGEKIRELLLRNEELSPLTEALLFAA 63

Query: 154 ------ERLSQPDSQENGWL-----------LDGYPRSLSQATALKK----YGFQPDLFI 192
                 E   +P  ++   +             G    L     L       G +PDL  
Sbjct: 64  DRIEHLEEKIKPALKQGKTVICDRYLFSSIAYQGAAGGLGLDLVLSLNPDVPGPKPDLTF 123

Query: 193 LLEVPEDTLVERVVGRRLDP 212
           LL+V  +  ++R+  R    
Sbjct: 124 LLDVDPEVALKRLRRRGELD 143

Length = 186

>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

 Score = 38.6 bits (91), Expect = 0.001
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 86  KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSEN 129
            I I G   SGK T  +L+ +K GL ++  G +   E+   +  
Sbjct: 1   IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASE 44

Length = 147

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 13/130 (10%)

Query: 87  IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
           I++ G P SGK T    +  + G V +++ D LR  +    +       +      V  +
Sbjct: 2   ILMVGLPGSGKSTFARRLLRELGAVVLSS-DTLRKRLRG--DGPPDISYYARASGRVY-Q 57

Query: 147 IVVTMVKERLSQPDSQENGWLLDG---YPRSLSQATAL-KKYGFQPDLFILLEVPEDTLV 202
            ++ + +E L          ++D         ++   L ++YG    + + LE PE+ L 
Sbjct: 58  RLLELAREALRAGRP----VIVDATNLSREERARLIDLARRYGAPVRI-VYLEAPEEVLR 112

Query: 203 ERVVGRRLDP 212
           ER   R    
Sbjct: 113 ERNAQRERSG 122

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	303
PLN02674	244	adenylate kinase	100.0
PLN02459	261	probable adenylate kinase	100.0
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	100.0
PRK14526	211	adenylate kinase; Provisional	100.0
PRK00279	215	adk adenylate kinase; Reviewed	100.0
PRK14529	223	adenylate kinase; Provisional	100.0
PTZ00088	229	adenylate kinase 1; Provisional	100.0
PLN02842	505	nucleotide kinase	100.0
PRK14530	215	adenylate kinase; Provisional	100.0
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	100.0
PRK13808	333	adenylate kinase; Provisional	100.0
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	99.98
PRK14528	186	adenylate kinase; Provisional	99.97
PRK14532	188	adenylate kinase; Provisional	99.97
PRK14531	183	adenylate kinase; Provisional	99.97
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.97
PRK14527	191	adenylate kinase; Provisional	99.97
PLN02200	234	adenylate kinase family protein	99.97
PRK02496	184	adk adenylate kinase; Provisional	99.97
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.97
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.96
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.96
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.95
PRK01184	184	hypothetical protein; Provisional	99.81
PRK13973	213	thymidylate kinase; Provisional	99.77
PRK13974	212	thymidylate kinase; Provisional	99.75
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	99.74
PRK08356	195	hypothetical protein; Provisional	99.73
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.72
PRK06217	183	hypothetical protein; Validated	99.72
PRK03839	180	putative kinase; Provisional	99.72
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.71
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.71
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.7
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.69
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.68
PRK13949	169	shikimate kinase; Provisional	99.68
PLN02924	220	thymidylate kinase	99.67
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.67
PTZ00451	244	dephospho-CoA kinase; Provisional	99.67
PRK00698	205	tmk thymidylate kinase; Validated	99.67
PLN02422	232	dephospho-CoA kinase	99.67
PRK08233	182	hypothetical protein; Provisional	99.65
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.64
PRK08118	167	topology modulation protein; Reviewed	99.64
PRK04182	180	cytidylate kinase; Provisional	99.64
PRK13975	196	thymidylate kinase; Provisional	99.63
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.63
PRK13946	184	shikimate kinase; Provisional	99.63
PRK13947	171	shikimate kinase; Provisional	99.62
PRK03731	171	aroL shikimate kinase II; Reviewed	99.62
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.61
PRK04040	188	adenylate kinase; Provisional	99.61
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.61
PRK00625	173	shikimate kinase; Provisional	99.61
PRK13948	182	shikimate kinase; Provisional	99.61
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.6
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.59
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.59
PRK00131	175	aroK shikimate kinase; Reviewed	99.58
PRK13976	209	thymidylate kinase; Provisional	99.58
PLN02199	303	shikimate kinase	99.58
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	99.58
PRK07933	213	thymidylate kinase; Validated	99.57
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	99.56
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.56
PRK05057	172	aroK shikimate kinase I; Reviewed	99.55
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.54
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.53
PHA02530	300	pseT polynucleotide kinase; Provisional	99.53
PRK06762	166	hypothetical protein; Provisional	99.52
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.52
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	99.51
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	99.51
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.49
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.48
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.45
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	99.45
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.44
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.44
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.44
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.43
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.43
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.42
PRK07261	171	topology modulation protein; Provisional	99.42
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.38
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.38
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.37
KOG3327	208	consensus Thymidylate kinase/adenylate kinase [Nuc	99.37
PRK05480	209	uridine/cytidine kinase; Provisional	99.37
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.37
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	99.34
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.33
PRK05541	176	adenylylsulfate kinase; Provisional	99.31
PRK14738	206	gmk guanylate kinase; Provisional	99.31
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.31
PRK14737	186	gmk guanylate kinase; Provisional	99.3
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.28
PRK09825	176	idnK D-gluconate kinase; Provisional	99.28
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	99.28
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.27
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.27
PRK00023	225	cmk cytidylate kinase; Provisional	99.25
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	99.25
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.23
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.23
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.22
PRK06547	172	hypothetical protein; Provisional	99.22
PRK00300	205	gmk guanylate kinase; Provisional	99.22
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.21
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.21
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.2
PRK11545	163	gntK gluconate kinase 1; Provisional	99.2
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	99.19
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.19
PRK12338	319	hypothetical protein; Provisional	99.19
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	99.17
PRK06696	223	uridine kinase; Validated	99.15
PTZ00301	210	uridine kinase; Provisional	99.14
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.12
PRK07667	193	uridine kinase; Provisional	99.08
PRK04220	301	2-phosphoglycerate kinase; Provisional	99.07
PRK03846	198	adenylylsulfate kinase; Provisional	99.05
PLN02348	395	phosphoribulokinase	99.03
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	99.02
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	99.01
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	99.0
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	99.0
PHA03132	580	thymidine kinase; Provisional	99.0
PRK00889	175	adenylylsulfate kinase; Provisional	98.98
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.97
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.96
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	98.96
PRK07429	327	phosphoribulokinase; Provisional	98.92
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	98.91
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	98.9
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	98.89
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.87
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.86
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.86
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.84
COG0645	170	Predicted kinase [General function prediction only	98.84
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.83
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.81
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.81
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	98.76
PLN02772	398	guanylate kinase	98.76
PRK05439	311	pantothenate kinase; Provisional	98.73
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.73
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.72
PRK15453	290	phosphoribulokinase; Provisional	98.71
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.71
COG4639	168	Predicted kinase [General function prediction only	98.7
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.7
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.69
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.68
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.67
KOG3308	225	consensus Uncharacterized protein of the uridine k	98.66
COG3709	192	Uncharacterized component of phosphonate metabolis	98.65
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.6
PLN02318	656	phosphoribulokinase/uridine kinase	98.57
PLN02165	334	adenylate isopentenyltransferase	98.5
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.43
PHA00729	226	NTP-binding motif containing protein	98.4
COG1660	286	Predicted P-loop-containing kinase [General functi	98.32
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	98.27
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	98.24
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	98.23
PRK09169	2316	hypothetical protein; Validated	98.22
PHA03136	378	thymidine kinase; Provisional	98.2
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	98.2
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	98.11
PRK06761	282	hypothetical protein; Provisional	98.11
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	98.1
PRK08099	399	bifunctional DNA-binding transcriptional repressor	98.08
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	98.05
TIGR01223	182	Pmev_kin_anim phosphomevalonate kinase, animal typ	98.03
PF00004	132	AAA: ATPase family associated with various cellula	98.0
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.99
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	97.98
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	97.98
PF13173	128	AAA_14: AAA domain	97.96
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.92
KOG3062	281	consensus RNA polymerase II elongator associated p	97.88
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.88
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.87
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	97.86
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.81
PLN02840	421	tRNA dimethylallyltransferase	97.81
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	97.77
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.76
CHL00195	489	ycf46 Ycf46; Provisional	97.75
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	97.74
PF03976	228	PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR	97.74
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	97.63
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.62
PLN02748	468	tRNA dimethylallyltransferase	97.61
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	97.59
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.58
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.57
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	97.56
smart00382	148	AAA ATPases associated with a variety of cellular	97.55
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.53
KOG0707	231	consensus Guanylate kinase [Nucleotide transport a	97.53
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.49
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.49
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	97.48
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	97.47
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.46
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	97.44
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.43
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	97.43
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	97.43
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.42
PLN02796	347	D-glycerate 3-kinase	97.42
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	97.42
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	97.41
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.38
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.34
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	97.34
PLN03046	460	D-glycerate 3-kinase; Provisional	97.32
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.28
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.27
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	97.25
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.25
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.25
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.23
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.23
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.22
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.22
PRK12402	337	replication factor C small subunit 2; Reviewed	97.22
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.21
PHA02244	383	ATPase-like protein	97.2
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.19
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	97.18
PRK09087	226	hypothetical protein; Validated	97.18
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.18
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	97.17
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	97.16
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.13
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.13
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	97.12
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.11
COG3911	183	Predicted ATPase [General function prediction only	97.1
PF13245	76	AAA_19: Part of AAA domain	97.09
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	97.09
PF05729	166	NACHT: NACHT domain	97.09
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.09
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.06
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	97.06
KOG1533	290	consensus Predicted GTPase [General function predi	97.06
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	97.06
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	97.04
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.04
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	97.04
KOG1969	877	consensus DNA replication checkpoint protein CHL12	97.03
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.03
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.03
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	97.01
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	97.01
CHL00181	287	cbbX CbbX; Provisional	97.0
PHA03134	340	thymidine kinase; Provisional	96.99
PF01712	146	dNK: Deoxynucleoside kinase; InterPro: IPR002624 T	96.99
PF07726	131	AAA_3: ATPase family associated with various cellu	96.96
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	96.96
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.95
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.95
TIGR00101	199	ureG urease accessory protein UreG. This model rep	96.95
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.95
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.93
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.93
PRK04195	482	replication factor C large subunit; Provisional	96.93
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	96.92
cd03116	159	MobB Molybdenum is an essential trace element in t	96.91
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.91
PRK13695	174	putative NTPase; Provisional	96.9
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	96.89
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	96.89
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.88
PRK14086	617	dnaA chromosomal replication initiation protein; P	96.88
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	96.87
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.87
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	96.86
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.85
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.84
PHA03135	343	thymidine kinase; Provisional	96.84
COG1855	604	ATPase (PilT family) [General function prediction	96.84
KOG0780	483	consensus Signal recognition particle, subunit Srp	96.83
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.83
PRK04328	249	hypothetical protein; Provisional	96.83
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.82
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.82
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	96.82
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.81
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.8
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	96.8
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.8
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	96.79
PRK10646	153	ADP-binding protein; Provisional	96.79
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	96.79
PTZ00202	550	tuzin; Provisional	96.78
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.78
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	96.78
PRK06620	214	hypothetical protein; Validated	96.77
PRK13342	413	recombination factor protein RarA; Reviewed	96.75
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.75
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.74
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.74
COG4240	300	Predicted kinase [General function prediction only	96.74
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.73
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.73
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	96.73
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.73
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.72
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	96.71
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.71
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	96.71
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	96.71
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	96.71
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	96.7
COG0802	149	Predicted ATPase or kinase [General function predi	96.68
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.67
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	96.67
PRK06067	234	flagellar accessory protein FlaH; Validated	96.67
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.66
PHA03138	340	thymidine kinase; Provisional	96.66
PRK08084	235	DNA replication initiation factor; Provisional	96.65
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	96.64
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.63
PRK06893	229	DNA replication initiation factor; Validated	96.63
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.63
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.63
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	96.63
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.62
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	96.62
PRK07940	394	DNA polymerase III subunit delta'; Validated	96.61
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	96.61
PRK14974	336	cell division protein FtsY; Provisional	96.61
PRK13768	253	GTPase; Provisional	96.6
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	96.6
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	96.59
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	96.58
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.58
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	96.57
PRK10416	318	signal recognition particle-docking protein FtsY;	96.57
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.56
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.55
PRK08116	268	hypothetical protein; Validated	96.54
CHL00176	638	ftsH cell division protein; Validated	96.54
KOG1534	273	consensus Putative transcription factor FET5 [Tran	96.54
COG2326	270	Uncharacterized conserved protein [Function unknow	96.53
PRK15455	644	PrkA family serine protein kinase; Provisional	96.53
PRK12377	248	putative replication protein; Provisional	96.53
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	96.52
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.52
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	96.51
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.5
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.5
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.5
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.49
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.47
PRK06526	254	transposase; Provisional	96.47
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	96.44
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.44
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.43
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.43
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.42
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	96.41
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	96.41
PRK09183	259	transposase/IS protein; Provisional	96.41
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.41
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	96.41
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.4
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	96.39
PRK04296	190	thymidine kinase; Provisional	96.38
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	96.37
PHA02544	316	44 clamp loader, small subunit; Provisional	96.36
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.36
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.36
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	96.36
PLN03025	319	replication factor C subunit; Provisional	96.35
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.33
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.33
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.33
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.33
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.32
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	96.32
PRK00149	450	dnaA chromosomal replication initiation protein; R	96.31
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.3
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.3
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	96.29
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.28
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.28
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	96.27
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.27
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	96.27
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.26
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	96.25
COG2087	175	CobU Adenosyl cobinamide kinase/adenosyl cobinamid	96.25
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.25
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.25
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.24
PRK08181	269	transposase; Validated	96.24
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.24
PHA03133	368	thymidine kinase; Provisional	96.23
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.23
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.23
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.23
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.23
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.22
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.22
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.22
PRK06921	266	hypothetical protein; Provisional	96.22
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	96.22
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.21
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.2
COG0714	329	MoxR-like ATPases [General function prediction onl	96.2
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.2
PHA02624	647	large T antigen; Provisional	96.2
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.2
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.2
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.19
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.19
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.18
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.18
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	96.18
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.18
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.17
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	96.17
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.17
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.17
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.17
PRK10867	433	signal recognition particle protein; Provisional	96.16
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.16
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	96.16
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	96.16
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.16
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.16
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	96.16
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	96.16
COG2884	223	FtsE Predicted ATPase involved in cell division [C	96.15
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.15
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.15
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.15
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	96.14
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.14
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.14
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	96.13
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	96.13
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	96.13
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	96.13
PRK13341	725	recombination factor protein RarA/unknown domain f	96.13
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	96.12
PRK13851	344	type IV secretion system protein VirB11; Provision	96.12
cd03246	173	ABCC_Protease_Secretion This family represents the	96.12
PRK07952	244	DNA replication protein DnaC; Validated	96.12
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.11
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.11
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	96.11
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	96.1
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	96.1
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	96.09
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	96.09
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	96.09
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.08
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	96.07
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	96.07
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	96.07
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	96.07
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	96.07
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.06
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	96.06
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	96.06
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	96.05
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.05
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	96.05
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.05
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.05
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	96.04
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	96.03
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.03
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.02
cd03114	148	ArgK-like The function of this protein family is u	96.02
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	96.01
TIGR00959	428	ffh signal recognition particle protein. This mode	96.01
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	96.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	96.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	96.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	96.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	96.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	96.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	96.0
PRK10908	222	cell division protein FtsE; Provisional	95.99
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	95.99
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	95.99
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	95.98
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	95.98
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	95.98
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	95.98
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	95.98

>PLN02674 adenylate kinase

Probab=100.00  E-value=1.2e-38  Score=276.63  Aligned_cols=203  Identities=37%  Similarity=0.694  Sum_probs=189.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      .++|+|.|+|||||+|+|+.|+++||+.||++++++++++..+++.|..+.+++..|..+|++.+..++.+++.+..+ .
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~-~  109 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC-Q  109 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc-C
Confidence            468999999999999999999999999999999999999999999999999999999999999999999999988766 5


Q ss_pred             CcEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----hhhc
Q 022042          164 NGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLT  235 (303)
Q Consensus       164 ~~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~rL~  235 (303)
                      +|||+||||++..|++.|++    .+..+|.+|+|++|.+++.+|+..|+.|+.+|+.||..|+||..++.+    ++|.
T Consensus       110 ~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~  189 (244)
T PLN02674        110 KGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI  189 (244)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCccc
Confidence            89999999999999998765    357899999999999999999999999999999999999999877654    3788


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHH
Q 022042          236 KRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       236 ~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l  287 (303)
                      +|.||.++.+++|++.|+++..++.++|..  .++.||+++++++|+++|..+|
T Consensus       190 ~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l  243 (244)
T PLN02674        190 QRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL  243 (244)
T ss_pred             cCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            999999999999999999999999999976  6889999999999999998876

>PLN02459 probable adenylate kinase

Probab=100.00  E-value=2.6e-36  Score=263.05  Aligned_cols=206  Identities=34%  Similarity=0.559  Sum_probs=187.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC-C
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD-S  161 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~-~  161 (303)
                      +++.|+|.|+|||||||+|+.|+++||+.+|++++++++++..+++.|..++.++..|..+|++++..++.+++.+.. +
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~  107 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE  107 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence            346788999999999999999999999999999999999999999999999999999999999999999999998752 3


Q ss_pred             CCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccC-------------CCCCc-
Q 022042          162 QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKY-------------SPPET-  227 (303)
Q Consensus       162 ~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~-------------~~p~~-  227 (303)
                      ...||||||||++..|++.|.... .++.||+|+++.+++++|+..|+.++.||+.||..+             +||.. 
T Consensus       108 ~~~g~iLDGFPRt~~Qa~~Le~~~-~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~  186 (261)
T PLN02459        108 GESGFILDGFPRTVRQAEILEGVT-DIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLP  186 (261)
T ss_pred             CCceEEEeCCCCCHHHHHHHHhcC-CCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCCC
Confidence            468999999999999999998764 689999999999999999999999999999999853             55432 


Q ss_pred             -hHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          228 -DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       228 -~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                       +.+..+|.+|.+|.++.+++|++.|+++..++.++|..  .++.||+++++++|+++|.++|..
T Consensus       187 ~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~  251 (261)
T PLN02459        187 PPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNL  251 (261)
T ss_pred             CcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhch
Confidence             34567899999999999999999999999999999976  688999999999999999998864

>TIGR01351 adk adenylate kinases

Probab=100.00  E-value=6.4e-36  Score=257.15  Aligned_cols=201  Identities=50%  Similarity=0.801  Sum_probs=186.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCCcE
Q 022042           87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW  166 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~  166 (303)
                      |+|.|+|||||||+|+.|+++||+.+|++++++++.+...++.+..+.+++..|..++++++..++.+++.+....+.+|
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~   81 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF   81 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence            78999999999999999999999999999999999998889999999999999999999999999999998865546899


Q ss_pred             EEcCCCCCHHHHHHHHHhCC-CCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchH----HHhhhccCCCCc
Q 022042          167 LLDGYPRSLSQATALKKYGF-QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDE----IAARLTKRFDDT  241 (303)
Q Consensus       167 Vldg~p~~~~~~~~l~~~~~-~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~----i~~rL~~r~~d~  241 (303)
                      ||||||++..|++.|.+... .++.+|+|++|++++.+|+.+|+.|+.||+.||..++||..++    ..++|..|.+|.
T Consensus        82 ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD~  161 (210)
T TIGR01351        82 ILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDT  161 (210)
T ss_pred             EEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCCC
Confidence            99999999999999988766 6999999999999999999999999999999999999987554    346788899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHH
Q 022042          242 EEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       242 ~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l  287 (303)
                      ++.+++|++.|+++..++.++|..  .++.||+++++++|++.|.+.|
T Consensus       162 ~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  209 (210)
T TIGR01351       162 EEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL  209 (210)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence            999999999999999999999976  6889999999999999998876

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK14526 adenylate kinase; Provisional

Probab=100.00  E-value=1.3e-35  Score=254.11  Aligned_cols=203  Identities=29%  Similarity=0.538  Sum_probs=186.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |.|+|+|+|||||||+|+.|++.|++.++++++++++....+++.+..+.+++..|..+|++.+..++.+++....+ .+
T Consensus         1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~-~~   79 (211)
T PRK14526          1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKN-ND   79 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccc-cC
Confidence            36889999999999999999999999999999999999988999999999999999999999999999999987765 68


Q ss_pred             cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----hhhccCCCC
Q 022042          165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTKRFDD  240 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~rL~~r~~d  240 (303)
                      +|||||||++..|++.|.+... ...+|+|++|++++.+|+..|+.|+.||+.||..++||..++.+    .+|.+|.||
T Consensus        80 g~ilDGfPR~~~Qa~~l~~~~~-~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD  158 (211)
T PRK14526         80 NFILDGFPRNINQAKALDKFLP-NIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDD  158 (211)
T ss_pred             cEEEECCCCCHHHHHHHHHhcC-CCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCC
Confidence            8999999999999999987532 24688899999999999999999999999999999999877654    578899999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          241 TEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       241 ~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                      .+|.+++|++.|+++..++.++|..  .++.||+++++++|+++|.+.|.+
T Consensus       159 ~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~  209 (211)
T PRK14526        159 KEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK  209 (211)
T ss_pred             CHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence            9999999999999999999999975  688999999999999999998864

>PRK00279 adk adenylate kinase; Reviewed

Probab=100.00  E-value=8.4e-35  Score=251.10  Aligned_cols=204  Identities=46%  Similarity=0.834  Sum_probs=187.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |+|+|.|+|||||||+|+.|+++||+.++++++++++.+..+++.+..+.+++..|..++++.+..++.+++.+..+ .+
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~-~~   79 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDC-KN   79 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCc-cC
Confidence            47999999999999999999999999999999999999998999999999999999999999999999999988765 45


Q ss_pred             cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHh----hhcc
Q 022042          165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAA----RLTK  236 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~----rL~~  236 (303)
                      +|||||||++..|+..|.+    .+..++.+|+|+++.+++.+|+..|..|+.||..||..++||..++.+.    +|..
T Consensus        80 g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~  159 (215)
T PRK00279         80 GFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQ  159 (215)
T ss_pred             CEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccC
Confidence            8999999999999988843    4567899999999999999999999999999999999999998776653    4788


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          237 RFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       237 r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                      |.+|.++.+++|+..|+.+..++.++|..  .++.||++.++++|+++|.+.|..
T Consensus       160 r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (215)
T PRK00279        160 RADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK  214 (215)
T ss_pred             CCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999986  588999999999999999998763

>PRK14529 adenylate kinase; Provisional

Probab=100.00  E-value=9.5e-35  Score=249.45  Aligned_cols=201  Identities=35%  Similarity=0.577  Sum_probs=176.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |.|+|.|+|||||||+|+.|+++||+.+++.++++++.+..+++.+..+++++..|..+|++++..++.+++.+..  .+
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~--~~   78 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG--KN   78 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC--CC
Confidence            4689999999999999999999999999999999999988899999999999999999999999999999998876  68


Q ss_pred             cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCC-CCCchH-----HHhhh
Q 022042          165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYS-PPETDE-----IAARL  234 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~-~p~~~~-----i~~rL  234 (303)
                      ||||||||++..|++.|..    .+..||.+|+|++|.+++.+|+..|+.++.+|..|+..+. ||..++     +.++|
T Consensus        79 g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l  158 (223)
T PRK14529         79 GWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGEL  158 (223)
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCcc
Confidence            9999999999999998765    4678999999999999999999999999998876655544 443322     23578


Q ss_pred             ccCCCCc-HHHHHHHHHHHHHH---HHHHHHHhhc-------ceEEEcCCCCHHHHHHHHHHHH
Q 022042          235 TKRFDDT-EEKVKLRLKTHHHN---VEAVLSLYED-------VTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       235 ~~r~~d~-~e~~~~r~~~~~~~---~~~~~~~~~~-------~~~~Id~~~s~eev~~~I~~~l  287 (303)
                      .+|.||. +|.+++|++.|+++   ..++.++|..       .++.||+++++++|+++|.++|
T Consensus       159 ~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l  222 (223)
T PRK14529        159 STRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL  222 (223)
T ss_pred             ccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence            8999996 78999999999987   4477788872       6899999999999999998876

>PTZ00088 adenylate kinase 1; Provisional

Probab=100.00  E-value=3.5e-34  Score=247.93  Aligned_cols=204  Identities=34%  Similarity=0.607  Sum_probs=180.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCC-C
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP-D  160 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~-~  160 (303)
                      +.||.|+|+|+|||||||+|+.|+++||+.+|++|+++++.+..+++.+..+++++..|..+|++.+..++.+++.+. .
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~   83 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTD   83 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhcc
Confidence            456889999999999999999999999999999999999999888999999999999999999999999999999873 3


Q ss_pred             CCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceeccc------C-CCCCc----hH
Q 022042          161 SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVK------Y-SPPET----DE  229 (303)
Q Consensus       161 ~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~------~-~~p~~----~~  229 (303)
                      +...+|||||||++..|+..+.+.. .++++|+|+++.+++++|+..|+.|+.||+.||..      + .||..    .+
T Consensus        84 ~~~~g~iLDGfPRt~~Qa~~l~~~~-~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~  162 (229)
T PTZ00088         84 DCFKGFILDGFPRNLKQCKELGKIT-NIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCE  162 (229)
T ss_pred             ccCceEEEecCCCCHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCccc
Confidence            3468899999999999999987654 79999999999999999999999999999999986      3 33321    11


Q ss_pred             HH---hhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhc--c-eEEE---cCCCCHHHHHHHHHHH
Q 022042          230 IA---ARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--V-TVEV---NGSVNKEDVFAQIDVA  286 (303)
Q Consensus       230 i~---~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~-~~~I---d~~~s~eev~~~I~~~  286 (303)
                      .+   ++|.+|.||.++.+++|++.|+++..++.++|..  . ++.+   |+++++++|++.|.+.
T Consensus       163 ~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~  228 (229)
T PTZ00088        163 GCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQR  228 (229)
T ss_pred             ccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhh
Confidence            11   3788999999999999999999999999999975  5 6666   7999999999988764

>PLN02842 nucleotide kinase

Probab=100.00  E-value=3.6e-34  Score=269.22  Aligned_cols=208  Identities=61%  Similarity=1.000  Sum_probs=197.3

Q ss_pred             EEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCCcEEE
Q 022042           89 ISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLL  168 (303)
Q Consensus        89 I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~Vl  168 (303)
                      |+|+|||||||+|+.|+++||+.+++++++++.++..+++.|..+++++..|..++++.+..++.+++....+..++|||
T Consensus         2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~IL   81 (505)
T PLN02842          2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWLL   81 (505)
T ss_pred             eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999876655688999


Q ss_pred             cCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHH
Q 022042          169 DGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLR  248 (303)
Q Consensus       169 dg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r  248 (303)
                      ||||++..|++.|.+.+..||++|+|+++++++++|+.+|..|+.||..||..++||..++...+|..|.+|.++.+++|
T Consensus        82 DGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~IkkR  161 (505)
T PLN02842         82 DGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKAR  161 (505)
T ss_pred             eCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHHHH
Confidence            99999999999998888889999999999999999999999999999999999999998888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHhhhh
Q 022042          249 LKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKS  296 (303)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~~~~  296 (303)
                      ++.|+++..++.++|.+.++.||++.++++|+++|.+.|.+.+.++..
T Consensus       162 L~~Y~~~t~pIl~~Y~~rl~~IDAsqs~EeVfeeI~~iL~~~L~~~~~  209 (505)
T PLN02842        162 LQIYKKNAEAILSTYSDIMVKIDGNRPKEVVFEEISSLLSQIQKDATK  209 (505)
T ss_pred             HHHHHHHhhhHHHhcCcEEEEEECCCCHHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999988999999999999999999999998887654

>PRK14530 adenylate kinase; Provisional

Probab=100.00  E-value=1.2e-32  Score=237.74  Aligned_cols=199  Identities=41%  Similarity=0.715  Sum_probs=177.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH-----HcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI-----AAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP  159 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~-----~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~  159 (303)
                      ++|+|+|+|||||||+|+.|+++||+.+++++++++...     ..++.++. +.+++..|..++++....++...+.. 
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~-   81 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD-   81 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc-
Confidence            379999999999999999999999999999999999876     23444554 66778899999999888888877654 


Q ss_pred             CCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHh----hhc
Q 022042          160 DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAA----RLT  235 (303)
Q Consensus       160 ~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~----rL~  235 (303)
                         ..+||+||||++..+++.|.... .++++|+|++|.+++++|+.+|+.++.+|+.||..++||..++.++    ||.
T Consensus        82 ---~~~~IldG~pr~~~q~~~l~~~~-~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~  157 (215)
T PRK14530         82 ---ADGFVLDGYPRNLEQAEYLESIT-DLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELI  157 (215)
T ss_pred             ---CCCEEEcCCCCCHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCccc
Confidence               46899999999999998887643 5899999999999999999999999999999999999998887766    899


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          236 KRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       236 ~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                      .|.+|.++.+++|+..|+++..++.++|..  .++.||+++++++|++.|...|.+
T Consensus       158 ~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  213 (215)
T PRK14530        158 QRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD  213 (215)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999976  688999999999999999988864

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.3e-32  Score=223.05  Aligned_cols=185  Identities=40%  Similarity=0.711  Sum_probs=169.5

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHc-CCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA-GSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP  159 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~-~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~  159 (303)
                      ...+++|+|.|+|||||.|+|..++++||+.|+|+++++|..... +++.|..+++++.+|..+|.+++..++++.+.+.
T Consensus         5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~   84 (195)
T KOG3079|consen    5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS   84 (195)
T ss_pred             ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence            456789999999999999999999999999999999999999988 9999999999999999999999999999999887


Q ss_pred             CCCCCcEEEcCCCCCHHHHHHHHHhCC-CCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCC
Q 022042          160 DSQENGWLLDGYPRSLSQATALKKYGF-QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF  238 (303)
Q Consensus       160 ~~~~~~~Vldg~p~~~~~~~~l~~~~~-~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~  238 (303)
                      .. .++++|||||+..+|...|++.-. .+++++|+||+.|++++|+..|...                       ..|.
T Consensus        85 ~~-~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~-----------------------~~R~  140 (195)
T KOG3079|consen   85 GD-SNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQS-----------------------NSRS  140 (195)
T ss_pred             CC-CCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhccc-----------------------CCCC
Confidence            65 345999999999999999998655 6999999999999999999999631                       1267


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          239 DDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                      ||+.+.+++|++.|+....+++++|+.  ++..|+++.++++|+.++...+..
T Consensus       141 DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~  193 (195)
T KOG3079|consen  141 DDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA  193 (195)
T ss_pred             CCchHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence            899999999999999999999999987  888999999999999999988754

>PRK13808 adenylate kinase; Provisional

Probab=100.00  E-value=1e-31  Score=241.82  Aligned_cols=190  Identities=36%  Similarity=0.629  Sum_probs=169.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |.|+|+|+|||||||+|+.|++.||+.+|+++++++..+..+++.+..+.+++..|..+|++++..++.+++.+..+ ..
T Consensus         1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~-~~   79 (333)
T PRK13808          1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDA-AN   79 (333)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc-cC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999988776 67


Q ss_pred             cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCC-CCceecccCCCCCchHHHhhhccCCC
Q 022042          165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPV-TGKIYHVKYSPPETDEIAARLTKRFD  239 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~-~g~~~~~~~~~p~~~~i~~rL~~r~~  239 (303)
                      ||||||||++..|++.|+.    .+..||++|+|++|++++++|+..|..+.. +|                  ...|.+
T Consensus        80 G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg------------------~~~R~D  141 (333)
T PRK13808         80 GFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARG------------------EEVRAD  141 (333)
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccC------------------CccCCC
Confidence            9999999999999987764    456899999999999999999998853211 11                  124678


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042          240 DTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLLEQ  293 (303)
Q Consensus       240 d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~~l~~  293 (303)
                      |.++.+.+|+..|+++..++.++|.+  .++.||++.++++|+++|...|..++..
T Consensus       142 D~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~~  197 (333)
T PRK13808        142 DTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGAA  197 (333)
T ss_pred             CCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhCC
Confidence            88999999999999999999999987  6889999999999999999999987764

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=99.98  E-value=2.9e-31  Score=225.55  Aligned_cols=213  Identities=43%  Similarity=0.783  Sum_probs=195.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      ++..++|.|+||+||+|+|.+|++.|++.|++++++++..+..+++.+..+.+.+..|..++|+++..++...+....+ 
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~-   92 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRC-   92 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcccccc-
Confidence            6778999999999999999999999999999999999999999999999999999999999999999977777777755 


Q ss_pred             CCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCc---hHHHh-hhccCC
Q 022042          163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPET---DEIAA-RLTKRF  238 (303)
Q Consensus       163 ~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~---~~i~~-rL~~r~  238 (303)
                      .++|++||||++..++..+.+.+..+|.||.|++|++.+.+|+..|+.|+.+|+.||..|+||..   +++.. .|.+|.
T Consensus        93 ~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~  172 (235)
T KOG3078|consen   93 QKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQRE  172 (235)
T ss_pred             ccccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCc
Confidence            68999999999999999999989999999999999999999999999999999999999999998   55544 499999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHHHHHhhhhc
Q 022042          239 DDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLLEQRKSA  297 (303)
Q Consensus       239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~~l~~~~~~  297 (303)
                      +|.++.+++|++.|+++..++.++|..  .+..+++.. .++||..+...+.+.+.++.+.
T Consensus       173 dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~~~~~~~  232 (235)
T KOG3078|consen  173 DDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKVPEREQK  232 (235)
T ss_pred             cccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhhhhhhhh
Confidence            999999999999999999999999976  566777777 8999999999999888776543

>PRK14528 adenylate kinase; Provisional

Probab=99.97  E-value=4.1e-30  Score=216.77  Aligned_cols=179  Identities=36%  Similarity=0.610  Sum_probs=162.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      |++|+|+|+|||||||+|+.|+++||+++++++++++..+..+++.+..+..++..|..++++.+..++.+++.+..+ .
T Consensus         1 ~~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~-~   79 (186)
T PRK14528          1 MKNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADC-K   79 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCc-c
Confidence            367999999999999999999999999999999999999999999999999999999999999999999999988766 5


Q ss_pred             CcEEEcCCCCCHHHHHHHHHh----CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042          164 NGWLLDGYPRSLSQATALKKY----GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD  239 (303)
Q Consensus       164 ~~~Vldg~p~~~~~~~~l~~~----~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~  239 (303)
                      .+||+||||++..|++.+++.    +..+|.+|+|++|++++.+|+..|...                       ..|.+
T Consensus        80 ~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~-----------------------~gr~d  136 (186)
T PRK14528         80 NGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI-----------------------EGRAD  136 (186)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc-----------------------cCCCC
Confidence            789999999999999987653    467999999999999999999998632                       24568


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHH
Q 022042          240 DTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVA  286 (303)
Q Consensus       240 d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~  286 (303)
                      |.+|.+.+|+..|+....++.++|..  .++.||+++++++|++.|.+.
T Consensus       137 d~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~  185 (186)
T PRK14528        137 DNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKE  185 (186)
T ss_pred             CCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence            88999999999999999999999975  799999999999999988764

>PRK14532 adenylate kinase; Provisional

Probab=99.97  E-value=1.3e-29  Score=214.16  Aligned_cols=180  Identities=41%  Similarity=0.665  Sum_probs=160.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |.|+|.|+|||||||+|+.|+++||+.++++|+++++.+..+++.+..+++++..|..++++.+..++.+.+....+ ++
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~   79 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEA-AG   79 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc-cC
Confidence            36899999999999999999999999999999999999988899999999999999999999999999999977765 78


Q ss_pred             cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042          165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD  240 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d  240 (303)
                      +||+||||++..|++.+.+    .+..||++|+|++|++++.+|+.+|..+                       ..|.++
T Consensus        80 g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~-----------------------~~r~dd  136 (188)
T PRK14532         80 GAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEE-----------------------QGRPDD  136 (188)
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCc-----------------------CCCCCC
Confidence            9999999999999987653    4678999999999999999999988521                       135677


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHH
Q 022042          241 TEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       241 ~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                      ..+.+.+|+..|+.+..++.++|..  .++.||+++++++|+++|.+.|.
T Consensus       137 ~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  186 (188)
T PRK14532        137 NPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE  186 (188)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence            7888999999999999999888865  67889999999999999998874

>PRK14531 adenylate kinase; Provisional

Probab=99.97  E-value=1.4e-29  Score=213.08  Aligned_cols=174  Identities=34%  Similarity=0.623  Sum_probs=156.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      ++|+|+|+|||||||+|+.|+++||+.+|++++++++.+..+++.+..+..++..|..++++.+..++.+.+....  ++
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~--~~   80 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALN--SG   80 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc--CC
Confidence            4799999999999999999999999999999999999999999999999999999999999999999888886643  57


Q ss_pred             cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042          165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD  240 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d  240 (303)
                      +|||||||++..|+..|+.    .+..++.+|+|+||++++.+|+..|.                           |.+|
T Consensus        81 g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~---------------------------r~dD  133 (183)
T PRK14531         81 GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG---------------------------RADD  133 (183)
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC---------------------------CCCC
Confidence            8999999999999987765    35568999999999999999999884                           3467


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHH
Q 022042          241 TEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       241 ~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l  287 (303)
                      .++.+.+|+..|++...++.++|..  .++.||+++++++|+++|.+.|
T Consensus       134 ~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  182 (183)
T PRK14531        134 NEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL  182 (183)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            7899999999999999999999975  6889999999999999998775

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.97  E-value=8.6e-30  Score=216.03  Aligned_cols=189  Identities=47%  Similarity=0.839  Sum_probs=170.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCCc
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG  165 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~  165 (303)
                      +|+|+|+|||||||+|+.|+++||+.++++++++++.+...++.+..+.+.+..+..++++.+..++...+.... .+.+
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~-~~~~   79 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPD-CKKG   79 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc-ccCC
Confidence            478999999999999999999999999999999999988888899999999999999999999999999887765 3578


Q ss_pred             EEEcCCCCCHHHHHHHHHhCC---CCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcH
Q 022042          166 WLLDGYPRSLSQATALKKYGF---QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE  242 (303)
Q Consensus       166 ~Vldg~p~~~~~~~~l~~~~~---~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~  242 (303)
                      ||+||||++..|+..|.+...   .++++|+|++|++++.+|+.+|..++.+|..||.    +..+....+|..|.+|..
T Consensus        80 ~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~----~~~~~~~~~l~~r~dd~~  155 (194)
T cd01428          80 FILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHL----GKDDVTGEPLSQRSDDNE  155 (194)
T ss_pred             EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCc----CCCcccCCccccCCCCCH
Confidence            999999999999999988665   7999999999999999999999999999999998    333345667888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh--cceEEEcCCCCHHHH
Q 022042          243 EKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNKEDV  279 (303)
Q Consensus       243 e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~s~eev  279 (303)
                      +.+++|+..|+.+..++.++|.  ..++.||+++++++|
T Consensus       156 ~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v  194 (194)
T cd01428         156 ETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV  194 (194)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence            9999999999999999999998  478899999988764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK14527 adenylate kinase; Provisional

Probab=99.97  E-value=7.1e-29  Score=210.27  Aligned_cols=182  Identities=36%  Similarity=0.627  Sum_probs=162.1

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      ..++++|+|.|+|||||||+|+.|+++||+.+++.+++++.....+++.+..+..++..|..++++.+..++.+.+....
T Consensus         3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~   82 (191)
T PRK14527          3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME   82 (191)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence            34678999999999999999999999999999999999999988888999999999999999999999999999887765


Q ss_pred             CCCCcEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhcc
Q 022042          161 SQENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTK  236 (303)
Q Consensus       161 ~~~~~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~  236 (303)
                      +  .+||+||||++..|++.+..    .+..++.+|+|++|++++.+|+.+|...                       ..
T Consensus        83 ~--~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~-----------------------~~  137 (191)
T PRK14527         83 P--VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQ-----------------------EG  137 (191)
T ss_pred             C--CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCccc-----------------------CC
Confidence            4  57999999999999887654    4567889999999999999999998521                       24


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHH
Q 022042          237 RFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       237 r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l  287 (303)
                      |.+|.++.+.+|++.|+++..++.++|.+  .++.||+++++++|+++|...|
T Consensus       138 r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  190 (191)
T PRK14527        138 RSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL  190 (191)
T ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence            66788999999999999999999999985  6899999999999999998775

>PLN02200 adenylate kinase family protein

Probab=99.97  E-value=1.1e-28  Score=214.79  Aligned_cols=185  Identities=32%  Similarity=0.632  Sum_probs=164.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS  161 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~  161 (303)
                      +.+++|+|+|+|||||||+|+.|+++||+.||++++++++.+...++.+..+.+.+..|..++++.+..++.+++.... 
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~-  119 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD-  119 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-
Confidence            4567999999999999999999999999999999999999998888899999999999999999999888888887543 


Q ss_pred             CCCcEEEcCCCCCHHHHHHHHHh-CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042          162 QENGWLLDGYPRSLSQATALKKY-GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD  240 (303)
Q Consensus       162 ~~~~~Vldg~p~~~~~~~~l~~~-~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d  240 (303)
                       +.+|||||||++..|+..+.+. +..||.+|+|+++++++.+|+.+|+.                         .|.++
T Consensus       120 -~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~-------------------------~r~dd  173 (234)
T PLN02200        120 -NNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ-------------------------GRVDD  173 (234)
T ss_pred             -CCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC-------------------------CCCCC
Confidence             4689999999999999888764 45799999999999999999998852                         24466


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042          241 TEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLLEQ  293 (303)
Q Consensus       241 ~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~~l~~  293 (303)
                      ..+.+++|++.|.+...++.++|..  .++.||+++++++|++.|.+.+...+..
T Consensus       174 ~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~~~  228 (234)
T PLN02200        174 NIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACEAM  228 (234)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcCCc
Confidence            7899999999999999999999975  6899999999999999999998876543

>PRK02496 adk adenylate kinase; Provisional

Probab=99.97  E-value=2.4e-28  Score=205.82  Aligned_cols=176  Identities=38%  Similarity=0.705  Sum_probs=158.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      |++|+|+|+|||||||+|+.|+++||+.++++++++++.+..+++.+..+..++..|..++++.+..++.+++.+..+ .
T Consensus         1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~-~   79 (184)
T PRK02496          1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDA-A   79 (184)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc-c
Confidence            468999999999999999999999999999999999999988899999999999999999999999999999987666 4


Q ss_pred             CcEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042          164 NGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD  239 (303)
Q Consensus       164 ~~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~  239 (303)
                      .+||+||||++..|+..+..    .+..|+++|+|++|++++.+|+..|.                           +.+
T Consensus        80 ~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~---------------------------~~d  132 (184)
T PRK02496         80 NGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG---------------------------RKD  132 (184)
T ss_pred             CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC---------------------------CCC
Confidence            78999999999999877765    34579999999999999999999884                           235


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHH
Q 022042          240 DTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       240 d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l  287 (303)
                      +.++.+++|+..|+.+..++.++|..  .++.||+++++++|+++|...|
T Consensus       133 d~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l  182 (184)
T PRK02496        133 DTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAAL  182 (184)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            66889999999999999999999964  6789999999999999998876

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.97  E-value=1.7e-28  Score=206.45  Aligned_cols=177  Identities=33%  Similarity=0.649  Sum_probs=156.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCCc
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG  165 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~  165 (303)
                      +|+|+|+|||||||+|+.|+++||+.++++++++++.+..+++.+..+++++..|..+|++.+..++.+.+....  +.+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~--~~~   78 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG--SKK   78 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC--CCc
Confidence            478999999999999999999999999999999999988888899999999999999999999999988887654  678


Q ss_pred             EEEcCCCCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcH
Q 022042          166 WLLDGYPRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE  242 (303)
Q Consensus       166 ~Vldg~p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~  242 (303)
                      ||+||||++..++..|.+.   +..||.+|||++|++++.+|+.+|...                       ..+.++..
T Consensus        79 ~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~-----------------------~~r~dd~~  135 (183)
T TIGR01359        79 FLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQS-----------------------SGRVDDNI  135 (183)
T ss_pred             EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCcc-----------------------CCCCCCCH
Confidence            9999999999999887653   357999999999999999999998521                       12345678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHH
Q 022042          243 EKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       243 e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l  287 (303)
                      +.+++|+..|.+...++.++|..  .++.||+++++++|+++|.+.+
T Consensus       136 e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l  182 (183)
T TIGR01359       136 ESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF  182 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence            89999999999999999998864  6889999999999999998775

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.96  E-value=5e-27  Score=198.00  Aligned_cols=183  Identities=40%  Similarity=0.662  Sum_probs=159.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      .++|+|+|+|||||||+|+.|+++||+.+++.+++++..+..+++.+..+...+..+..++++.+...+.+.+......+
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTS   82 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcC
Confidence            35899999999999999999999999999999999999877777788888888888988998888888888877665567


Q ss_pred             CcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHH
Q 022042          164 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEE  243 (303)
Q Consensus       164 ~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e  243 (303)
                      .+||+||||++..++..+......|+++|||++|++++.+|+.+|..                       ...|.++.++
T Consensus        83 ~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~-----------------------~~~r~d~~~~  139 (188)
T TIGR01360        83 KGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE-----------------------TSGRVDDNEK  139 (188)
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc-----------------------cCCCCCCCHH
Confidence            89999999999999998887666799999999999999999998852                       1125567788


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          244 KVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       244 ~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                      .+.+|+..|+.+..++.++|..  .++.||++.++++++++|...|+.
T Consensus       140 ~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  187 (188)
T TIGR01360       140 TIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAIDK  187 (188)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            9999999999999998888864  778899999999999999998864

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.96  E-value=3e-27  Score=196.99  Aligned_cols=173  Identities=47%  Similarity=0.788  Sum_probs=160.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |+|+|.|+|||||||+|+.|+++|+++|+|.+++++......++.+..++.++..|..++++.+...+..++.+.++.. 
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~-   79 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKA-   79 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccC-
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999999988755 


Q ss_pred             cEEEcCCCCCHHHHHHHHHh----CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042          165 GWLLDGYPRSLSQATALKKY----GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD  240 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~~----~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d  240 (303)
                      ++|+||||++..++..+++.    +..+|.++.++++.+.++.|+..|..                          |.+|
T Consensus        80 ~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~--------------------------r~dd  133 (178)
T COG0563          80 GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV--------------------------REDD  133 (178)
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc--------------------------cccC
Confidence            99999999999999988763    67889999999999999999998851                          5688


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHH
Q 022042          241 TEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       241 ~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l  287 (303)
                      .++.+++|+..|++...++..+|.   +.||+.++++++++.+.+.+
T Consensus       134 ~~~~~~~R~~~y~~~~~pli~~y~---~~id~~~~i~~v~~~i~~~l  177 (178)
T COG0563         134 NEETVKKRLKVYHEQTAPLIEYYS---VTIDGSGEIEEVLADILKAL  177 (178)
T ss_pred             CHHHHHHHHHHHHhcccchhhhhe---eeccCCCCHHHHHHHHHHhh
Confidence            999999999999999999999997   78999999999999998765

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.95  E-value=9.3e-27  Score=189.96  Aligned_cols=144  Identities=50%  Similarity=0.891  Sum_probs=130.0

Q ss_pred             EEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCCcEEE
Q 022042           89 ISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLL  168 (303)
Q Consensus        89 I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~Vl  168 (303)
                      |.|+|||||||+|+.|+++||+.+|++++++++.+..+++.|..+++.+.+|..+|++.+..++..++.+. ....||||
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~-~~~~g~il   79 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQP-PCNRGFIL   79 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSG-GTTTEEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh-cccceeee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999987 44799999


Q ss_pred             cCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHH
Q 022042          169 DGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEK  244 (303)
Q Consensus       169 dg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~  244 (303)
                      ||||++..|+..|.+    ....|+.+|+|+|+++++.+|+..                                |..+.
T Consensus        80 dGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~--------------------------------d~~~~  127 (151)
T PF00406_consen   80 DGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ--------------------------------DNEEV  127 (151)
T ss_dssp             ESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT--------------------------------GSHHH
T ss_pred             eeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc--------------------------------CCHHH
Confidence            999999999999998    788999999999999999999875                                34788


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 022042          245 VKLRLKTHHHNVEAVLSLYED  265 (303)
Q Consensus       245 ~~~r~~~~~~~~~~~~~~~~~  265 (303)
                      +++|++.|+++..++.++|..
T Consensus       128 i~~Rl~~y~~~~~~i~~~y~~  148 (151)
T PF00406_consen  128 IKKRLEEYRENTEPILDYYKE  148 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999964

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK01184 hypothetical protein; Provisional

Probab=99.81  E-value=8.6e-18  Score=141.41  Aligned_cols=176  Identities=19%  Similarity=0.235  Sum_probs=117.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHc-CCc-----chHHHHHHHHcCCCcChHHHHHHHHHHHc
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA-GSE-----NGKRAKEHMEKGQLVPDEIVVTMVKERLS  157 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~-~~~-----~~~~i~~~~~~g~~~~~~~~~~~l~~~l~  157 (303)
                      |++|+|+|+|||||||+++ +++++|++++++++++++.+.. +.+     ++....+....   +....+..++...+.
T Consensus         1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~   76 (184)
T PRK01184          1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKE---LGMDAVAKRTVPKIR   76 (184)
T ss_pred             CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHH---HChHHHHHHHHHHHH
Confidence            5689999999999999987 7789999999999999998643 221     34444333322   122333344444454


Q ss_pred             CCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccC
Q 022042          158 QPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKR  237 (303)
Q Consensus       158 ~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r  237 (303)
                      .  ..+..+|+||+ +...+.+.+.+....+..+|+|+||.+++.+|+..|... .                        
T Consensus        77 ~--~~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~-~------------------------  128 (184)
T PRK01184         77 E--KGDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRS-D------------------------  128 (184)
T ss_pred             h--cCCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCC-C------------------------
Confidence            4  22577999999 788888777665434568999999999999999987410 0                        


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042          238 FDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQ  293 (303)
Q Consensus       238 ~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~  293 (303)
                      .....+.+.+|...+..  ....+.+...-++|+++++++++.+++.+.+..++..
T Consensus       129 d~~~~~~~~~r~~~q~~--~~~~~~~~~ad~vI~N~~~~~~l~~~v~~~~~~~~~~  182 (184)
T PRK01184        129 DPKSWEELEERDERELS--WGIGEVIALADYMIVNDSTLEEFRARVRKLLERILRS  182 (184)
T ss_pred             ChhhHHHHHHHHHHHhc--cCHHHHHHhcCEEEeCCCCHHHHHHHHHHHHHHHhcc
Confidence            00124555555544321  0012222233467788999999999999999877653

>PRK13973 thymidylate kinase; Provisional

Probab=99.77  E-value=8.1e-17  Score=138.69  Aligned_cols=179  Identities=22%  Similarity=0.313  Sum_probs=112.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CCceeeh--------HHHHHHHHHcC--CcchHHHHHHHHcCCCcChHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY---GLVHIAA--------GDLLRAEIAAG--SENGKRAKEHMEKGQLVPDEIVV  149 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~--------d~l~~~~~~~~--~~~~~~i~~~~~~g~~~~~~~~~  149 (303)
                      ++++|+|+|++||||||+++.|+++|   |+.++.+        ++++++.+...  ...+......+-.+  ...+.+.
T Consensus         2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~   79 (213)
T PRK13973          2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVE   79 (213)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHH
Confidence            36799999999999999999999999   7777655        56666654431  11222222222111  0112223


Q ss_pred             HHHHHHHcCCCCCCCcEEEcCC----------CC--CHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCC
Q 022042          150 TMVKERLSQPDSQENGWLLDGY----------PR--SLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVT  214 (303)
Q Consensus       150 ~~l~~~l~~~~~~~~~~Vldg~----------p~--~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~  214 (303)
                      ..+...+..    +..+|.|.|          ++  ...++..+..   ....||++|||++|++++.+|+.+|......
T Consensus        80 ~~i~~~l~~----g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~  155 (213)
T PRK13973         80 EVIRPALAR----GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTP  155 (213)
T ss_pred             HHHHHHHHC----CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCcc
Confidence            334444433    445666753          22  2234444443   2357999999999999999999988521100


Q ss_pred             CceecccCCCCCchHHHhhhccCCC-CcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042          215 GKIYHVKYSPPETDEIAARLTKRFD-DTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       215 g~~~~~~~~~p~~~~i~~rL~~r~~-d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~  292 (303)
                                           .+.+ +..+..+++.+.|.+.    .+.|...+++||+++++++|.++|.++|.+.+.
T Consensus       156 ---------------------~~~e~~~~~~~~~~~~~y~~l----~~~~~~~~~~Ida~~~~e~V~~~I~~~i~~~~~  209 (213)
T PRK13973        156 ---------------------DRFEKEDLAFHEKRREAFLQI----AAQEPERCVVIDATASPEAVAAEIWAAVDQRLL  209 (213)
T ss_pred             ---------------------CchhhchHHHHHHHHHHHHHH----HHhCCCcEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence                                 0111 2345555556555543    344555678899999999999999999988765

>PRK13974 thymidylate kinase; Provisional

Probab=99.75  E-value=4.5e-17  Score=140.14  Aligned_cols=179  Identities=18%  Similarity=0.250  Sum_probs=110.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceee--hHHHHHHHHHcCCcchHHHHHHHHc--CCCcChHHHHHHH--HH---
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA--AGDLLRAEIAAGSENGKRAKEHMEK--GQLVPDEIVVTMV--KE---  154 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~--~d~l~~~~~~~~~~~~~~i~~~~~~--g~~~~~~~~~~~l--~~---  154 (303)
                      +.+|+|.|++||||||+++.|++.+.....-  -..++......+++.|+.+++++..  +...++.....++  .+   
T Consensus         3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~   82 (212)
T PRK13974          3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ   82 (212)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence            5799999999999999999999988421110  0011111123467788888888853  2233333322222  11   


Q ss_pred             ----HHcCCCCCCCcEEE----------cCCCCCH--HHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042          155 ----RLSQPDSQENGWLL----------DGYPRSL--SQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTG  215 (303)
Q Consensus       155 ----~l~~~~~~~~~~Vl----------dg~p~~~--~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g  215 (303)
                          .+......+..+|.          +|+|+..  .++..+..   .+..||++|||+||++++.+|+..|..     
T Consensus        83 ~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~d-----  157 (212)
T PRK13974         83 HVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKP-----  157 (212)
T ss_pred             HHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccc-----
Confidence                12211122333343          4566543  23444433   356799999999999999999987631     


Q ss_pred             ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042          216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLLEQ  293 (303)
Q Consensus       216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~~l~~  293 (303)
                                              |   .+.++...|.+...+.+.+|..  .+++||+++++++|+++|.++|.+.+.+
T Consensus       158 ------------------------D---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~~~~  210 (212)
T PRK13974        158 ------------------------D---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNNFSN  210 (212)
T ss_pred             ------------------------C---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence                                    1   1223344455555555555543  6788999999999999999999987655


Q ss_pred             h
Q 022042          294 R  294 (303)
Q Consensus       294 ~  294 (303)
                      +
T Consensus       211 ~  211 (212)
T PRK13974        211 K  211 (212)
T ss_pred             c
Confidence            3

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=99.74  E-value=8.8e-17  Score=136.78  Aligned_cols=178  Identities=23%  Similarity=0.352  Sum_probs=116.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHHHHHHHcCCcchHHHHHHHHcC-CCcChHHH--------HH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKG-QLVPDEIV--------VT  150 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g-~~~~~~~~--------~~  150 (303)
                      ++++|+|+|..||||||+++.|+++|   |+.++-.      ..+.+++.++.+++.+.++ ..+.+...        .+
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t------rEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~   75 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT------REPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQ   75 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE------eCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999988   4333311      1244677888888887775 23322221        12


Q ss_pred             HHHHHHcCCCCCCCcEEEcCCCC------------CHHHHHHHHHhCC---CCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042          151 MVKERLSQPDSQENGWLLDGYPR------------SLSQATALKKYGF---QPDLFILLEVPEDTLVERVVGRRLDPVTG  215 (303)
Q Consensus       151 ~l~~~l~~~~~~~~~~Vldg~p~------------~~~~~~~l~~~~~---~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g  215 (303)
                      .+.+.+......+..+|.|.|-.            ...+...+.+...   .||+++|||+|+++.++|+.+|+..    
T Consensus        76 h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~----  151 (208)
T COG0125          76 HLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL----  151 (208)
T ss_pred             HHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCc----
Confidence            22333333333356677776422            2334443444444   8999999999999999999998631    


Q ss_pred             ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042          216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~  292 (303)
                                         ..+.+. ++.  ..++..++.+..+.+.+...+++||++.++++|.++|.++|.+.+.
T Consensus       152 -------------------~~r~E~-~~~--~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l~  206 (208)
T COG0125         152 -------------------RDRFEK-EDD--EFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERLG  206 (208)
T ss_pred             -------------------cchhhh-HHH--HHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHhhc
Confidence                               001111 111  2233444455556666766789999999999999999999988764

>PRK08356 hypothetical protein; Provisional

Probab=99.73  E-value=9e-17  Score=136.55  Aligned_cols=174  Identities=17%  Similarity=0.214  Sum_probs=107.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcC----C---cchHH----HHHHHHcCCCcCh----HHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAG----S---ENGKR----AKEHMEKGQLVPD----EIV  148 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~----~---~~~~~----i~~~~~~g~~~~~----~~~  148 (303)
                      .++|+|+|+|||||||+|++|+ ++|+.+|++++.+++.....    +   ..+..    ...++..+..+++    +.+
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~   83 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL   83 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence            4689999999999999999996 58999999998655432221    0   11111    1233444444442    444


Q ss_pred             HHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCch
Q 022042          149 VTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETD  228 (303)
Q Consensus       149 ~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~  228 (303)
                      .....+.+..    ...+++||+ ++..++..|...   ...+|||++|.+++.+|+.+|.....           |   
T Consensus        84 ~~~~~~~~~~----~~~ividG~-r~~~q~~~l~~~---~~~vi~l~~~~~~~~~Rl~~R~~~~~-----------~---  141 (195)
T PRK08356         84 IRLAVDKKRN----CKNIAIDGV-RSRGEVEAIKRM---GGKVIYVEAKPEIRFERLRRRGAEKD-----------K---  141 (195)
T ss_pred             HHHHHHHhcc----CCeEEEcCc-CCHHHHHHHHhc---CCEEEEEECCHHHHHHHHHhcCCccc-----------c---
Confidence            4555555532    235999999 999999888764   24899999999999999998852100           0   


Q ss_pred             HHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          229 EIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       229 ~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                           +    ....+.+.+++..... ...........-++|+++.+++++.++|.+++..+
T Consensus       142 -----~----~~~~e~~~~~~~~~~~-l~~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~~~~  193 (195)
T PRK08356        142 -----G----IKSFEDFLKFDEWEEK-LYHTTKLKDKADFVIVNEGTLEELRKKVEEILREL  193 (195)
T ss_pred             -----c----cccHHHHHHHHHHHHH-hhhhhhHHHhCcEEEECCCCHHHHHHHHHHHHHHh
Confidence                 0    0013333333221111 10011111122345667789999999999988764

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.72  E-value=1.2e-16  Score=135.67  Aligned_cols=165  Identities=21%  Similarity=0.287  Sum_probs=107.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC-----cCh-------------
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VPD-------------  145 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~-----~~~-------------  145 (303)
                      |++|+|+|++||||||+++.|++ +|++++++|.+.++.+..+.+....+.+.+..+..     +..             
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~   80 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA   80 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence            46899999999999999999988 99999999999999888777666666665543211     211             


Q ss_pred             -----HHHHHHHHHH----HcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042          146 -----EIVVTMVKER----LSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK  216 (303)
Q Consensus       146 -----~~~~~~l~~~----l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~  216 (303)
                           ..+...+...    +..... ...+|+|. |...+ . .+   ...+|.+|++++|++++.+|+.+|+       
T Consensus        81 ~~~L~~i~hP~v~~~~~~~~~~~~~-~~~vv~e~-pll~e-~-~~---~~~~D~vi~V~a~~e~~~~Rl~~R~-------  146 (194)
T PRK00081         81 RKKLEAILHPLIREEILEQLQEAES-SPYVVLDI-PLLFE-N-GL---EKLVDRVLVVDAPPETQLERLMARD-------  146 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccc-CCEEEEEe-hHhhc-C-Cc---hhhCCeEEEEECCHHHHHHHHHHcC-------
Confidence                 1122222222    222111 24466664 21111 0 01   1247999999999999999999884       


Q ss_pred             eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                                            ..+.+.+..|+..+.......    ....++|+++++++++.+++.+.+++
T Consensus       147 ----------------------~~s~e~~~~ri~~Q~~~~~~~----~~ad~vI~N~g~~e~l~~qv~~i~~~  193 (194)
T PRK00081        147 ----------------------GLSEEEAEAIIASQMPREEKL----ARADDVIDNNGDLEELRKQVERLLQE  193 (194)
T ss_pred             ----------------------CCCHHHHHHHHHHhCCHHHHH----HhCCEEEECCCCHHHHHHHHHHHHHh
Confidence                                  123456666666543322211    11236789999999999999888754

>PRK06217 hypothetical protein; Validated

Probab=99.72  E-value=3.5e-16  Score=131.60  Aligned_cols=169  Identities=20%  Similarity=0.282  Sum_probs=103.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      |++|+|+|++||||||+|+.|++++|+++++.|++++..  .+..+          +...+++.....+.+.+..    +
T Consensus         1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~----~   64 (183)
T PRK06217          1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPF----------TTKRPPEERLRLLLEDLRP----R   64 (183)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCc----------cccCCHHHHHHHHHHHHhc----C
Confidence            478999999999999999999999999999999988641  11111          1112344444444444432    4


Q ss_pred             CcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHH
Q 022042          164 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEE  243 (303)
Q Consensus       164 ~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e  243 (303)
                      .+||+||++.....  .+   ...+|.+|||++|.+++++|+.+|.... .|+. .. .. ...           .....
T Consensus        65 ~~~vi~G~~~~~~~--~~---~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~-~~~~-~~-~~-~~~-----------e~~~~  124 (183)
T PRK06217         65 EGWVLSGSALGWGD--PL---EPLFDLVVFLTIPPELRLERLRLREFQR-YGNR-IL-PG-GDM-----------HKASL  124 (183)
T ss_pred             CCEEEEccHHHHHH--HH---HhhCCEEEEEECCHHHHHHHHHcCcccc-cCcc-cC-CC-CCH-----------HHHHH
Confidence            57999998643211  11   2248899999999999999999986432 1110 00 00 000           00111


Q ss_pred             HHHHHHHHHHH------HH---HHHHHHhhcceEEEcCCCCHHHHHHHHHHHHH
Q 022042          244 KVKLRLKTHHH------NV---EAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       244 ~~~~r~~~~~~------~~---~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                      .+.++...|..      ..   ..+...+...++.+++..+++++.++|.+.|.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~  178 (183)
T PRK06217        125 EFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLA  178 (183)
T ss_pred             HHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHh
Confidence            22232222221      11   11222233467788999999999998888874

>PRK03839 putative kinase; Provisional

Probab=99.72  E-value=3.7e-16  Score=131.00  Aligned_cols=151  Identities=22%  Similarity=0.282  Sum_probs=94.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |+|+|+|+|||||||+++.|++++|++++++|+++++.     ..+.....   .+     +.....+...+.+... +.
T Consensus         1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-----~~~~~~~~---~~-----~~~~~~l~~~~~~~~~-~~   66 (180)
T PRK03839          1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-----GIGEEKDD---EM-----EIDFDKLAYFIEEEFK-EK   66 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-----CCcccCCh---hh-----hcCHHHHHHHHHHhcc-CC
Confidence            37999999999999999999999999999999988652     11111000   00     1112233333332222 46


Q ss_pred             cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHH
Q 022042          165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEK  244 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~  244 (303)
                      ++|+||+...      +    ..++.+|||+++++++.+|+..|....                   .       +..+.
T Consensus        67 ~vIidG~~~~------l----~~~~~vi~L~~~~~~~~~Rl~~R~~~~-------------------~-------~~~~~  110 (180)
T PRK03839         67 NVVLDGHLSH------L----LPVDYVIVLRAHPKIIKERLKERGYSK-------------------K-------KILEN  110 (180)
T ss_pred             CEEEEecccc------c----cCCCEEEEEECCHHHHHHHHHHcCCCH-------------------H-------HHHHH
Confidence            6999997432      1    248899999999999999998874210                   0       00011


Q ss_pred             HHHHHHHHHHHHHHHHHHh--hcceEEEcCC-CCHHHHHHHHHHHHHHH
Q 022042          245 VKLRLKTHHHNVEAVLSLY--EDVTVEVNGS-VNKEDVFAQIDVALTNL  290 (303)
Q Consensus       245 ~~~r~~~~~~~~~~~~~~~--~~~~~~Id~~-~s~eev~~~I~~~l~~~  290 (303)
                      ...++...     .+.+.|  ...++.||++ .++++++++|.+.+...
T Consensus       111 ~~~~~~~~-----~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~~  154 (180)
T PRK03839        111 VEAELVDV-----CLCEALEEKEKVIEVDTTGKTPEEVVEEILELIKSG  154 (180)
T ss_pred             HHHHHHHH-----HHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHhcC
Confidence            11111110     111222  2357889986 69999999999888654

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.71  E-value=7.3e-16  Score=125.97  Aligned_cols=166  Identities=23%  Similarity=0.288  Sum_probs=104.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      .+.|+++|++||||||+++.||+.+|+.++|+|.++.+.      .+..+.+++.. |..-....-...+.+.+..    
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~------~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~----   71 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKR------TGMSIAEIFEEEGEEGFRRLETEVLKELLEE----   71 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHH------HCcCHHHHHHHHhHHHHHHHHHHHHHHHhhc----
Confidence            357899999999999999999999999999999999885      44666666665 3222222222333333322    


Q ss_pred             CCcEEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042          163 ENGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD  240 (303)
Q Consensus       163 ~~~~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d  240 (303)
                      +..+|-.|  ..........+...+    .+|||++|.+++++|+......|                     +.+..+.
T Consensus        72 ~~~ViaTGGG~v~~~enr~~l~~~g----~vv~L~~~~e~l~~Rl~~~~~RP---------------------ll~~~~~  126 (172)
T COG0703          72 DNAVIATGGGAVLSEENRNLLKKRG----IVVYLDAPFETLYERLQRDRKRP---------------------LLQTEDP  126 (172)
T ss_pred             CCeEEECCCccccCHHHHHHHHhCC----eEEEEeCCHHHHHHHhccccCCC---------------------cccCCCh
Confidence            23455554  224445555566554    89999999999999998443211                     2221121


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042          241 TEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL  291 (303)
Q Consensus       241 ~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l  291 (303)
                           .+.++..++...+++....  .++++.+...++++++|.+.+...+
T Consensus       127 -----~~~l~~L~~~R~~~Y~e~a--~~~~~~~~~~~~v~~~i~~~l~~~~  170 (172)
T COG0703         127 -----REELEELLEERQPLYREVA--DFIIDTDDRSEEVVEEILEALEGSL  170 (172)
T ss_pred             -----HHHHHHHHHHHHHHHHHhC--cEEecCCCCcHHHHHHHHHHHHHhc
Confidence                 2223333444444444433  3556666555899998888886543

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.71  E-value=4.9e-16  Score=132.38  Aligned_cols=167  Identities=23%  Similarity=0.358  Sum_probs=111.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChH-----------------
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE-----------------  146 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~-----------------  146 (303)
                      |++|+|+|++||||||+++.|++ +|+++++.|++.++.+..+.+....+.+.+..+...++.                 
T Consensus         1 m~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~   79 (200)
T PRK14734          1 MLRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQ   79 (200)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHH
Confidence            35899999999999999999987 899999999999999888877777777666554332211                 


Q ss_pred             ------HHHHHH----HHHHcCCCCCC-CcEEEcCCCCCHHHHHHHHHhC--CCCcEEEEEEcCHHHHHHHHhcCCCCCC
Q 022042          147 ------IVVTMV----KERLSQPDSQE-NGWLLDGYPRSLSQATALKKYG--FQPDLFILLEVPEDTLVERVVGRRLDPV  213 (303)
Q Consensus       147 ------~~~~~l----~~~l~~~~~~~-~~~Vldg~p~~~~~~~~l~~~~--~~pd~vI~L~~~~e~~~~Rl~~R~~~~~  213 (303)
                            ++...+    ...+......+ ..++++ .|.       +.+.+  ..+|.+||+++|.+++++|+.+|+    
T Consensus        80 ~~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e-~pl-------L~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~----  147 (200)
T PRK14734         80 TALLNAITHPRIAEETARRFNEARAQGAKVAVYD-MPL-------LVEKGLDRKMDLVVVVDVDVEERVRRLVEKR----  147 (200)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEE-eec-------eeEcCccccCCeEEEEECCHHHHHHHHHHcC----
Confidence                  011111    11111111112 223333 221       11111  257999999999999999999884    


Q ss_pred             CCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042          214 TGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       214 ~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~  292 (303)
                                               +-+.+.+..|+..+......    .....++|+++++++++.+++...++++++
T Consensus       148 -------------------------g~s~e~~~~ri~~Q~~~~~k----~~~ad~vI~N~g~~e~l~~~v~~~~~~~~~  197 (200)
T PRK14734        148 -------------------------GLDEDDARRRIAAQIPDDVR----LKAADIVVDNNGTREQLLAQVDGLIAEILS  197 (200)
T ss_pred             -------------------------CCCHHHHHHHHHhcCCHHHH----HHhCCEEEECcCCHHHHHHHHHHHHHHHHh
Confidence                                     12356667777666544222    122346789999999999999999887764

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.70  E-value=6.9e-16  Score=130.97  Aligned_cols=163  Identities=21%  Similarity=0.234  Sum_probs=106.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC------cCh-------------
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL------VPD-------------  145 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~------~~~-------------  145 (303)
                      ++|+|+|++||||||+++.|++.+|++++++|++.++.+..+.+....+.+.+.....      +..             
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            5799999999999999999999899999999999999988888777777766643221      111             


Q ss_pred             -----HHHHHHH----HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042          146 -----EIVVTMV----KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK  216 (303)
Q Consensus       146 -----~~~~~~l----~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~  216 (303)
                           +++...+    ...+.... ....+|+|- |...+.  .+.   ..+|.+|+++||.+++.+|+.+|+       
T Consensus        82 ~~~l~~i~hP~i~~~~~~~~~~~~-~~~~vv~e~-pll~E~--~~~---~~~D~ii~V~a~~e~r~~Rl~~R~-------  147 (195)
T PRK14730         82 RRWLENLIHPYVRERFEEELAQLK-SNPIVVLVI-PLLFEA--KLT---DLCSEIWVVDCSPEQQLQRLIKRD-------  147 (195)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcC-CCCEEEEEe-HHhcCc--chH---hCCCEEEEEECCHHHHHHHHHHcC-------
Confidence                 0111222    22222221 123455553 211110  011   147999999999999999999884       


Q ss_pred             eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHH
Q 022042          217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l  287 (303)
                                            ..+.+.+.+|+..+.....    .-...-++|+++++++++.+++.+++
T Consensus       148 ----------------------g~s~e~~~~ri~~Q~~~~~----k~~~aD~vI~N~g~~e~l~~qv~~~l  192 (195)
T PRK14730        148 ----------------------GLTEEEAEARINAQWPLEE----KVKLADVVLDNSGDLEKLYQQVDQLL  192 (195)
T ss_pred             ----------------------CCCHHHHHHHHHhCCCHHH----HHhhCCEEEECCCCHHHHHHHHHHHH
Confidence                                  1224555666654332111    11112357899999999999998775

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.69  E-value=4.4e-15  Score=118.64  Aligned_cols=166  Identities=25%  Similarity=0.317  Sum_probs=101.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcC--hHHHHHHHHHHHcCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP--DEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~--~~~~~~~l~~~l~~~~~~  162 (303)
                      |+|.|.|+|||||||+|+.||++||+.+++.+.++|+..+.   .|..+.++..-.+.-|  |..+.....+...     
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e---~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~-----   72 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARE---RGMSLEEFSRYAEEDPEIDKEIDRRQKELAK-----   72 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHH---cCCCHHHHHHHHhcCchhhHHHHHHHHHHHH-----
Confidence            57999999999999999999999999999999999987654   2333333222221111  2222222222222     


Q ss_pred             CCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcH
Q 022042          163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE  242 (303)
Q Consensus       163 ~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~  242 (303)
                      .+.+|++|.-.     -++..  ...|+.|||.+|.+++.+|+.+|..     .                       +..
T Consensus        73 ~~nvVlegrLA-----~Wi~k--~~adlkI~L~Apl~vRa~Ria~REg-----i-----------------------~~~  117 (179)
T COG1102          73 EGNVVLEGRLA-----GWIVR--EYADLKIWLKAPLEVRAERIAKREG-----I-----------------------DVD  117 (179)
T ss_pred             cCCeEEhhhhH-----HHHhc--cccceEEEEeCcHHHHHHHHHHhcC-----C-----------------------CHH
Confidence            46789998421     11221  3589999999999999999999851     1                       111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh----c---ceEEEcC-CCCHHHHHHHHHHHHHHHHHh
Q 022042          243 EKVKLRLKTHHHNVEAVLSLYE----D---VTVEVNG-SVNKEDVFAQIDVALTNLLEQ  293 (303)
Q Consensus       243 e~~~~r~~~~~~~~~~~~~~~~----~---~~~~Id~-~~s~eev~~~I~~~l~~~l~~  293 (303)
                      +...+-...-..+.+.+.+.|+    +   .-++||. ..++++|+..|...+..+..+
T Consensus       118 ~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~~~  176 (179)
T COG1102         118 EALAETVEREESEKKRYKKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALSIK  176 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhccc
Confidence            2221111111222222333332    1   2345665 468899999888888766543

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.68  E-value=1.4e-15  Score=128.86  Aligned_cols=169  Identities=24%  Similarity=0.319  Sum_probs=111.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcCh------------------
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD------------------  145 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~------------------  145 (303)
                      |++|+|+|.+||||||+|+.+++ +|++++++|+++++....+.+....+.+.+.....-.+                  
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~   80 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA   80 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence            67999999999999999999998 99999999999999888776655555554432221001                  


Q ss_pred             -----HHHHHHHHHHHc-CCCCCCCcEEEcCCCCCHHHHHHHHHhCC--CCcEEEEEEcCHHHHHHHHhcCCCCCCCCce
Q 022042          146 -----EIVVTMVKERLS-QPDSQENGWLLDGYPRSLSQATALKKYGF--QPDLFILLEVPEDTLVERVVGRRLDPVTGKI  217 (303)
Q Consensus       146 -----~~~~~~l~~~l~-~~~~~~~~~Vldg~p~~~~~~~~l~~~~~--~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~  217 (303)
                           .+...++...+. ........+++-..|       .|.+.+.  .+|.+|+++||+++.++|+.+|.        
T Consensus        81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~eip-------lL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~--------  145 (201)
T COG0237          81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLEIP-------LLFEAGGEKYFDKVIVVYAPPEIRLERLMKRD--------  145 (201)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhCCceEEEch-------HHHhccccccCCEEEEEECCHHHHHHHHHhcC--------
Confidence                 111222222210 000111223333333       2333321  27899999999999999999985        


Q ss_pred             ecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042          218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQ  293 (303)
Q Consensus       218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~  293 (303)
                                           ..+.+....++..+....+.    +.-.-++++++.+++...+++.+.+..++..
T Consensus       146 ---------------------~~~~e~~~~~~~~Q~~~~ek----~~~ad~vi~n~~~i~~l~~~i~~~~~~~~~~  196 (201)
T COG0237         146 ---------------------GLDEEDAEARLASQRDLEEK----LALADVVIDNDGSIENLLEQIEKLLKELLGL  196 (201)
T ss_pred             ---------------------CCCHHHHHHHHHhcCCHHHH----HhhcCChhhcCCCHHHHHHHHHHHHHHHHhh
Confidence                                 23455666666655544443    2222357899999999999999999888764

>PRK13949 shikimate kinase; Provisional

Probab=99.68  E-value=3.8e-15  Score=123.57  Aligned_cols=161  Identities=17%  Similarity=0.234  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      +.|+|+|+|||||||+++.|++.+++.+++.|.++.+..      +..+.+++.. |.....+....++.+ +..    .
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~------~~~~~~~~~~~g~~~fr~~e~~~l~~-l~~----~   70 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRF------HKTVGDIFAERGEAVFRELERNMLHE-VAE----F   70 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHH------CccHHHHHHHhCHHHHHHHHHHHHHH-HHh----C
Confidence            579999999999999999999999999999999887642      2233333332 322222222233333 221    2


Q ss_pred             CcEEE-cC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC-CCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042          164 NGWLL-DG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR-LDPVTGKIYHVKYSPPETDEIAARLTKRFD  239 (303)
Q Consensus       164 ~~~Vl-dg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~-~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~  239 (303)
                      .++|+ +|  ++........+.+    .+++|||++|.+++++|+..+. ..|                     +..  +
T Consensus        71 ~~~vis~Ggg~~~~~~~~~~l~~----~~~vi~L~~~~~~~~~Ri~~~~~~RP---------------------~~~--~  123 (169)
T PRK13949         71 EDVVISTGGGAPCFFDNMELMNA----SGTTVYLKVSPEVLFVRLRLAKQQRP---------------------LLK--G  123 (169)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHh----CCeEEEEECCHHHHHHHHhcCCCCCC---------------------CCC--C
Confidence            34555 54  5566666666764    3589999999999999997532 111                     111  1


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCC-CCHHHHHHHHHHH
Q 022042          240 DTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVA  286 (303)
Q Consensus       240 d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~-~s~eev~~~I~~~  286 (303)
                      ...+.+...+...++.+.++++..   -++||.+ .++++++++|.+.
T Consensus       124 ~~~~~~~~~i~~l~~~R~~~Y~~a---d~~id~~~~~~~e~~~~I~~~  168 (169)
T PRK13949        124 KSDEELLDFIIEALEKRAPFYRQA---KIIFNADKLEDESQIEQLVQR  168 (169)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhC---CEEEECCCCCHHHHHHHHHHh
Confidence            112223334444455555554442   2556644 5888888888764

>PLN02924 thymidylate kinase

Probab=99.67  E-value=2.6e-15  Score=129.50  Aligned_cols=175  Identities=17%  Similarity=0.205  Sum_probs=105.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHH-------HH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMV-------KE  154 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l-------~~  154 (303)
                      +.+++|+|+|.+||||||+++.|++++....+.+ .++++ ...++..|..+++++..+..+.+....-++       ..
T Consensus        14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~   91 (220)
T PLN02924         14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRS   91 (220)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4567999999999999999999999996443332 11111 122466777788777655433332211000       11


Q ss_pred             HHcCCCCCCCcEEEcCCCC-----------CHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCC
Q 022042          155 RLSQPDSQENGWLLDGYPR-----------SLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYS  223 (303)
Q Consensus       155 ~l~~~~~~~~~~Vldg~p~-----------~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~  223 (303)
                      .+......+..+|.|.|..           ..++...+......||++||||+|++++.+|...+.              
T Consensus        92 ~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~--------------  157 (220)
T PLN02924         92 LMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGG--------------  157 (220)
T ss_pred             HHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc--------------
Confidence            1222222366788887543           122333344445679999999999999999954221              


Q ss_pred             CCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042          224 PPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       224 ~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~  292 (303)
                              ++    . +..+. .+++...+   ..+.+   ..+.+||++.++++|.++|.+.|.+.+.
T Consensus       158 --------~~----~-E~~~~-~~rv~~~Y---~~la~---~~~~vIDa~~sieeV~~~I~~~I~~~l~  206 (220)
T PLN02924        158 --------ER----Y-EKLEF-QKKVAKRF---QTLRD---SSWKIIDASQSIEEVEKKIREVVLDTVQ  206 (220)
T ss_pred             --------cc----c-ccHHH-HHHHHHHH---HHHhh---cCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence                    00    0 11222 22222222   22221   3467889999999999999999988765

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.67  E-value=1.2e-15  Score=130.91  Aligned_cols=171  Identities=16%  Similarity=0.231  Sum_probs=106.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc--------CC-CcChH-------
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK--------GQ-LVPDE-------  146 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~--------g~-~~~~~-------  146 (303)
                      .+++|+|+|++||||||+++.|.+ +|+.+++.|.+.++....+......+...+..        |. .+...       
T Consensus         4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf   82 (208)
T PRK14731          4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF   82 (208)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence            457899999999999999999986 89999999999888765544332233322211        10 01100       


Q ss_pred             -----------HHH----HHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCC
Q 022042          147 -----------IVV----TMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLD  211 (303)
Q Consensus       147 -----------~~~----~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~  211 (303)
                                 ++.    ..+...+......+..+|+-+.|.-.+. . +   ...+|.+|++++|.+++.+|+.+|+  
T Consensus        83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~-~-~---~~~~d~ii~V~a~~e~~~~Rl~~R~--  155 (208)
T PRK14731         83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFES-G-G---DAGLDFIVVVAADTELRLERAVQRG--  155 (208)
T ss_pred             CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeec-C-c---hhcCCeEEEEECCHHHHHHHHHHcC--
Confidence                       011    1112222221112223444333321110 0 1   1247999999999999999999985  


Q ss_pred             CCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042          212 PVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL  291 (303)
Q Consensus       212 ~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l  291 (303)
                                                 ..+.+.+.+|++.+......+. .   ..++|+++++++++.+++.+.+..++
T Consensus       156 ---------------------------~~s~e~~~~Ri~~q~~~~~~~~-~---ad~vI~N~g~~e~l~~~i~~~~~~~~  204 (208)
T PRK14731        156 ---------------------------MGSREEIRRRIAAQWPQEKLIE-R---ADYVIYNNGTLDELKAQTEQLYQVLL  204 (208)
T ss_pred             ---------------------------CCCHHHHHHHHHHcCChHHHHH-h---CCEEEECCCCHHHHHHHHHHHHHHHH
Confidence                                       1236677777776655444432 1   24678899999999999999998876


Q ss_pred             H
Q 022042          292 E  292 (303)
Q Consensus       292 ~  292 (303)
                      .
T Consensus       205 ~  205 (208)
T PRK14731        205 Q  205 (208)
T ss_pred             H
Confidence            3

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.67  E-value=2.8e-15  Score=130.70  Aligned_cols=170  Identities=14%  Similarity=0.146  Sum_probs=109.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCC-----CcChH------------
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-----LVPDE------------  146 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~-----~~~~~------------  146 (303)
                      |++|+|+|.+||||||+++.|.+++|+++|++|.+.++.+..+.+....+.+.+....     .+...            
T Consensus         1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~   80 (244)
T PTZ00451          1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA   80 (244)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence            4689999999999999999999989999999999999988877666555655442211     11111            


Q ss_pred             ------HHHHHH----HHHHcC---------CCCCC-CcEEEcCCCCCHHHHHHHHHh--CCCCcEEEEEEcCHHHHHHH
Q 022042          147 ------IVVTMV----KERLSQ---------PDSQE-NGWLLDGYPRSLSQATALKKY--GFQPDLFILLEVPEDTLVER  204 (303)
Q Consensus       147 ------~~~~~l----~~~l~~---------~~~~~-~~~Vldg~p~~~~~~~~l~~~--~~~pd~vI~L~~~~e~~~~R  204 (303)
                            ++...+    ...+.+         ....+ ..+|+|. |.-      ++..  ...+|.+|++++|.+++.+|
T Consensus        81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev-PLL------~E~~~~~~~~D~iv~V~a~~e~ri~R  153 (244)
T PTZ00451         81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA-PTL------FETKTFTYFVSASVVVSCSEERQIER  153 (244)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe-chh------hccCchhhcCCeEEEEECCHHHHHHH
Confidence                  111111    112211         00111 2466664 211      1111  12469999999999999999


Q ss_pred             HhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCC--CCHHHHHHH
Q 022042          205 VVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS--VNKEDVFAQ  282 (303)
Q Consensus       205 l~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~--~s~eev~~~  282 (303)
                      +.+|+                             ..+.+.+++|+..+......    -...-++|+|+  ++++++.++
T Consensus       154 L~~R~-----------------------------g~s~eea~~Ri~~Q~~~~ek----~~~aD~VI~N~~~g~~~~L~~~  200 (244)
T PTZ00451        154 LRKRN-----------------------------GFSKEEALQRIGSQMPLEEK----RRLADYIIENDSADDLDELRGS  200 (244)
T ss_pred             HHHcC-----------------------------CCCHHHHHHHHHhCCCHHHH----HHhCCEEEECCCCCCHHHHHHH
Confidence            99884                             22356667777654332221    11123578888  999999999


Q ss_pred             HHHHHHHHHHh
Q 022042          283 IDVALTNLLEQ  293 (303)
Q Consensus       283 I~~~l~~~l~~  293 (303)
                      +.+.+..+.++
T Consensus       201 v~~~~~~~~~~  211 (244)
T PTZ00451        201 VCDCVAWMSRQ  211 (244)
T ss_pred             HHHHHHHHHhh
Confidence            99998776543

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.67  E-value=2.5e-15  Score=128.25  Aligned_cols=176  Identities=22%  Similarity=0.306  Sum_probs=99.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC---ceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcCh-HHHH-------H
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGL---VHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPD-EIVV-------T  150 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~---~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~-~~~~-------~  150 (303)
                      ++++|+|+|++||||||+++.|+++++.   .++..     .. ..+...++.+++.+.. ...... ....       .
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~-----~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   75 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT-----RE-PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ   75 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe-----eC-CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence            4579999999999999999999998732   22211     00 1123455555555542 111111 1111       1


Q ss_pred             HHHHHHcCCCCCCCcEEEcCCCCC------------HHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042          151 MVKERLSQPDSQENGWLLDGYPRS------------LSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTG  215 (303)
Q Consensus       151 ~l~~~l~~~~~~~~~~Vldg~p~~------------~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g  215 (303)
                      .+.+.+......+..+|+|.|...            ..+...+...   ...||++|||++|++++.+|+.+|+..    
T Consensus        76 ~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~----  151 (205)
T PRK00698         76 HLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGEL----  151 (205)
T ss_pred             HHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCc----
Confidence            111111111123567888854321            2222233322   257999999999999999999998510    


Q ss_pred             ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042          216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL  291 (303)
Q Consensus       216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l  291 (303)
                                      ++    .........+++.   ..+..+.+.+...+++||++.+++++.++|.+.|.+++
T Consensus       152 ----------------~~----~~~~~~~~~~~~~---~~y~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i~~~~  204 (205)
T PRK00698        152 ----------------DR----IEQEGLDFFERVR---EGYLELAEKEPERIVVIDASQSLEEVHEDILAVIKAWL  204 (205)
T ss_pred             ----------------ch----hhhhhHHHHHHHH---HHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence                            00    0000112222222   22333333444467889999999999999999998765

>PLN02422 dephospho-CoA kinase

Probab=99.67  E-value=2.2e-15  Score=130.18  Aligned_cols=167  Identities=20%  Similarity=0.221  Sum_probs=107.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC-----cCh--------------
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VPD--------------  145 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~-----~~~--------------  145 (303)
                      ++|+|+|++||||||+++.|+ ++|++++++|++.++.+..+++....+.+.+.....     +..              
T Consensus         2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~   80 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR   80 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            479999999999999999998 589999999999999988876655555555432211     111              


Q ss_pred             ----HHHHHHHHHHHc----CCC-CCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042          146 ----EIVVTMVKERLS----QPD-SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK  216 (303)
Q Consensus       146 ----~~~~~~l~~~l~----~~~-~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~  216 (303)
                          +++...+...+.    +.. .....+|+|- |.-.+ .    .....+|.+|+++||.+++.+|+.+|+       
T Consensus        81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~ei-pLL~E-~----~~~~~~D~vI~V~a~~e~ri~RL~~R~-------  147 (232)
T PLN02422         81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDI-PLLFE-T----KMDKWTKPVVVVWVDPETQLERLMARD-------  147 (232)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEe-hhhhh-c----chhhhCCEEEEEECCHHHHHHHHHHcC-------
Confidence                112222222221    111 1123455553 32111 0    011247999999999999999999985       


Q ss_pred             eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042          217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL  291 (303)
Q Consensus       217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l  291 (303)
                                            ..+.+.+.+|++.+......    -....++|+|+++++++.+++.+.+++++
T Consensus       148 ----------------------g~s~eea~~Ri~~Q~~~eek----~~~AD~VI~N~gs~e~L~~qv~~ll~~l~  196 (232)
T PLN02422        148 ----------------------GLSEEQARNRINAQMPLDWK----RSKADIVIDNSGSLEDLKQQFQKVLEKIR  196 (232)
T ss_pred             ----------------------CCCHHHHHHHHHHcCChhHH----HhhCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence                                  12355666666544332111    11123678999999999999999887764

>PRK08233 hypothetical protein; Provisional

Probab=99.65  E-value=1.8e-15  Score=126.71  Aligned_cols=169  Identities=17%  Similarity=0.231  Sum_probs=94.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC-ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGL-VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS  161 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~-~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~  161 (303)
                      ++++|+|+|++||||||+|+.|+++++. ..+..|.....      .....+..+...+... +......+...+.....
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~   74 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFD------NCPEDICKWIDKGANY-SEWVLTPLIKDIQELIA   74 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcc------cCchhhhhhhhccCCh-hhhhhHHHHHHHHHHHc
Confidence            4579999999999999999999999963 33333322110      0111223333333322 22222333333322211


Q ss_pred             C-CCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042          162 Q-ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD  240 (303)
Q Consensus       162 ~-~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d  240 (303)
                      . +..+|+.++|......    ..+..+|++|||++|.+++++|+.+|...                           +.
T Consensus        75 ~~~~~~vivd~~~~~~~~----~~~~~~d~~i~l~~~~~~~~~R~~~R~~~---------------------------~~  123 (182)
T PRK08233         75 KSNVDYIIVDYPFAYLNS----EMRQFIDVTIFIDTPLDIAMARRILRDFK---------------------------ED  123 (182)
T ss_pred             CCCceEEEEeeehhhccH----HHHHHcCEEEEEcCCHHHHHHHHHHHHhh---------------------------hc
Confidence            1 1244454444332211    12224789999999999999998877421                           00


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHH----hh-cceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          241 TEEKVKLRLKTHHHNVEAVLSL----YE-DVTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       241 ~~e~~~~r~~~~~~~~~~~~~~----~~-~~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                      ..+.+.+++..|.....+.+..    +. ...++||++.++++++++|.+.+..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~~  177 (182)
T PRK08233        124 TGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELYR  177 (182)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence            1122334455554433333222    11 2457799999999999999998764

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.64  E-value=1.3e-14  Score=123.23  Aligned_cols=168  Identities=14%  Similarity=0.176  Sum_probs=105.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCC----CcCh--------------
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ----LVPD--------------  145 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~----~~~~--------------  145 (303)
                      |++|+|+|++||||||+++.|++++|+.+++.|.+.++.+.. ......+.+.+....    .+..              
T Consensus         6 ~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~   84 (204)
T PRK14733          6 TYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAK   84 (204)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHH
Confidence            578999999999999999999998999999999999888654 222233332222111    1111              


Q ss_pred             ----HHHHHHH----HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCce
Q 022042          146 ----EIVVTMV----KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKI  217 (303)
Q Consensus       146 ----~~~~~~l----~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~  217 (303)
                          .++...+    ...+...  ....+|+|- |.-.+.-  +. ....+|.+|++.||.++..+|+.+|+        
T Consensus        85 ~~Le~i~HP~V~~~~~~~~~~~--~~~~vv~ei-pLL~E~~--~~-~~~~~D~vi~V~a~~e~ri~Rl~~Rd--------  150 (204)
T PRK14733         85 KWLEDYLHPVINKEIKKQVKES--DTVMTIVDI-PLLGPYN--FR-HYDYLKKVIVIKADLETRIRRLMERD--------  150 (204)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhc--CCCeEEEEe-chhhhcc--Cc-hhhhCCEEEEEECCHHHHHHHHHHcC--------
Confidence                1122222    2222221  123455654 2111100  00 01247899999999999999999885        


Q ss_pred             ecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCC-CHHHHHHHHHHHHHHHH
Q 022042          218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSV-NKEDVFAQIDVALTNLL  291 (303)
Q Consensus       218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~-s~eev~~~I~~~l~~~l  291 (303)
                                           ..+++.+.+|+..+....+....    .-++|++++ +++++.+++.+.++++.
T Consensus       151 ---------------------~~s~~~a~~ri~~Q~~~eek~~~----aD~VI~N~g~~~~~l~~~~~~~~~~~~  200 (204)
T PRK14733        151 ---------------------GKNRQQAVAFINLQISDKEREKI----ADFVIDNTELTDQELESKLITTINEIT  200 (204)
T ss_pred             ---------------------CCCHHHHHHHHHhCCCHHHHHHh----CCEEEECcCCCHHHHHHHHHHHHHHHH
Confidence                                 22356667777665543332221    236789999 99999999999988874

>PRK08118 topology modulation protein; Reviewed

Probab=99.64  E-value=2.7e-15  Score=124.26  Aligned_cols=100  Identities=28%  Similarity=0.458  Sum_probs=74.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      |+.|+|+|++||||||+|+.|++++|++++++|+++..                ..+..++++.+..++.+.+.     .
T Consensus         1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~----------------~~w~~~~~~~~~~~~~~~~~-----~   59 (167)
T PRK08118          1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK----------------PNWEGVPKEEQITVQNELVK-----E   59 (167)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc----------------cCCcCCCHHHHHHHHHHHhc-----C
Confidence            46899999999999999999999999999999988753                11233445544455544443     3


Q ss_pred             CcEEEcC-CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042          164 NGWLLDG-YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL  210 (303)
Q Consensus       164 ~~~Vldg-~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~  210 (303)
                      .+||+|| |+....  ..+.    .+|.+|||++|.+++..|+.+|..
T Consensus        60 ~~wVidG~~~~~~~--~~l~----~~d~vi~Ld~p~~~~~~R~~~R~~  101 (167)
T PRK08118         60 DEWIIDGNYGGTMD--IRLN----AADTIIFLDIPRTICLYRAFKRRV  101 (167)
T ss_pred             CCEEEeCCcchHHH--HHHH----hCCEEEEEeCCHHHHHHHHHHHHH
Confidence            5799999 544432  1233    489999999999999999998853

>PRK04182 cytidylate kinase; Provisional

Probab=99.64  E-value=2.3e-14  Score=119.66  Aligned_cols=113  Identities=28%  Similarity=0.414  Sum_probs=70.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |+|+|+|.+||||||+++.|++++|+++++.+++++............+.+.   +...+.  +...+...+......++
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~   75 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKY---AEEDPE--IDKEIDRRQLEIAEKED   75 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHH---hhcCch--HHHHHHHHHHHHHhcCC
Confidence            4899999999999999999999999999999998887654322111122221   211111  11111111111111246


Q ss_pred             cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      ++|++|.-...     +..  ..++++|||++|.+++.+|+..|.
T Consensus        76 ~~Vi~g~~~~~-----~~~--~~~~~~V~l~a~~e~~~~Rl~~r~  113 (180)
T PRK04182         76 NVVLEGRLAGW-----MAK--DYADLKIWLKAPLEVRAERIAERE  113 (180)
T ss_pred             CEEEEEeecce-----Eec--CCCCEEEEEECCHHHHHHHHHhcc
Confidence            78888731111     111  127899999999999999999874

>PRK13975 thymidylate kinase; Provisional

Probab=99.63  E-value=6.8e-14  Score=118.73  Aligned_cols=170  Identities=19%  Similarity=0.239  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHH-------HHHHc
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMV-------KERLS  157 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l-------~~~l~  157 (303)
                      ++|+|+|++||||||+++.|+++++..+...        ..++..+..+++++..+ ...+.....++       ...+.
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~--------~~~~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~~~~i~   73 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLNAFWTCE--------PTDGKIGKLIREILSGS-KCDKETLALLFAADRVEHVKEIE   73 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCeeEC--------CCCChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999998532110        11223344444444333 11111110000       00111


Q ss_pred             CCCCCCCcEEEcCCCCC-----------HHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCC
Q 022042          158 QPDSQENGWLLDGYPRS-----------LSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE  226 (303)
Q Consensus       158 ~~~~~~~~~Vldg~p~~-----------~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~  226 (303)
                      .... ...+|+|.|...           ......+......||++|||+++++++.+|+..|..+               
T Consensus        74 ~~~~-~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~---------------  137 (196)
T PRK13975         74 EDLK-KRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKE---------------  137 (196)
T ss_pred             HHHc-CCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCcc---------------
Confidence            1111 256888875321           1122223333457999999999999999999987410               


Q ss_pred             chHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHh-hcceEEEcCC-CCHHHHHHHHHHHHHHHH
Q 022042          227 TDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY-EDVTVEVNGS-VNKEDVFAQIDVALTNLL  291 (303)
Q Consensus       227 ~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~-~~~~~~Id~~-~s~eev~~~I~~~l~~~l  291 (303)
                                 ..+..+..++..+.|.+... ...++ ...+++||++ .++++++++|.+.|.+.+
T Consensus       138 -----------~~~~~~~~~~~~~~y~~~~~-~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~  192 (196)
T PRK13975        138 -----------IFEKKEFLKKVQEKYLELAN-NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKI  192 (196)
T ss_pred             -----------ccchHHHHHHHHHHHHHHHh-hcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence                       01112333333334433322 11112 1246789985 899999999998886543

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.63  E-value=2.3e-14  Score=121.42  Aligned_cols=171  Identities=22%  Similarity=0.281  Sum_probs=95.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHHHHHHHcCCcchHHHHHHHHcCC---CcChHH-------HHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ---LVPDEI-------VVTM  151 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~---~~~~~~-------~~~~  151 (303)
                      |+|+|+|++||||||+++.|++++   |+.++....      ...+..+..+++++....   ..+...       ....
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   74 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH   74 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence            579999999999999999999998   554443311      112223444444444321   111100       0011


Q ss_pred             HHHHHcCCCCCCCcEEEcCCCCC------------HHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042          152 VKERLSQPDSQENGWLLDGYPRS------------LSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK  216 (303)
Q Consensus       152 l~~~l~~~~~~~~~~Vldg~p~~------------~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~  216 (303)
                      +.+.+......+..+|+|.++..            ..+...+..   ....|+++|||+++++++.+|+.+|.....   
T Consensus        75 ~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~---  151 (200)
T cd01672          75 VEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDR---  151 (200)
T ss_pred             HHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcch---
Confidence            11112111123567888854321            122222222   234799999999999999999998852100   


Q ss_pred             eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHH
Q 022042          217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                                          .... .....+++   ...+..+...+...+++||++.+++++.++|.+.|.
T Consensus       152 --------------------~~~~-~~~~~~~~---~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~  199 (200)
T cd01672         152 --------------------DEQE-GLEFHERV---REGYLELAAQEPERIIVIDASQPLEEVLAEILKAIL  199 (200)
T ss_pred             --------------------hhhh-hHHHHHHH---HHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence                                0001 11122222   222333333433457889999999999999988774

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK13946 shikimate kinase; Provisional

Probab=99.63  E-value=3e-14  Score=119.90  Aligned_cols=171  Identities=19%  Similarity=0.166  Sum_probs=101.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDS  161 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~  161 (303)
                      .++.|+|+|++||||||+++.|++++|+++++.|.++....  +....    +++.. |.....+.....+...+..   
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~----e~~~~~ge~~~~~~e~~~l~~l~~~---   79 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIA----EIFAAYGEPEFRDLERRVIARLLKG---   79 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHH----HHHHHHCHHHHHHHHHHHHHHHHhc---
Confidence            34589999999999999999999999999999998776542  22222    22221 2111111122223322221   


Q ss_pred             CCCcEEEcCCC--CCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042          162 QENGWLLDGYP--RSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD  239 (303)
Q Consensus       162 ~~~~~Vldg~p--~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~  239 (303)
                       +..+|.+|..  ........+..    ..++|||++|.+++.+|+..|...+.                     .. ..
T Consensus        80 -~~~Vi~~ggg~~~~~~~r~~l~~----~~~~v~L~a~~e~~~~Rl~~r~~rp~---------------------~~-~~  132 (184)
T PRK13946         80 -GPLVLATGGGAFMNEETRAAIAE----KGISVWLKADLDVLWERVSRRDTRPL---------------------LR-TA  132 (184)
T ss_pred             -CCeEEECCCCCcCCHHHHHHHHc----CCEEEEEECCHHHHHHHhcCCCCCCc---------------------CC-CC
Confidence             3445555432  33344444443    34789999999999999988752211                     00 01


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHhhh
Q 022042          240 DTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRK  295 (303)
Q Consensus       240 d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~~~  295 (303)
                      +..+.    ++...+...+++..|  .+.....+.+++++++.|.+.+..++.+..
T Consensus       133 ~~~~~----i~~~~~~R~~~y~~~--dl~i~~~~~~~~~~~~~i~~~i~~~~~~~~  182 (184)
T PRK13946        133 DPKET----LARLMEERYPVYAEA--DLTVASRDVPKEVMADEVIEALAAYLEKEE  182 (184)
T ss_pred             ChHHH----HHHHHHHHHHHHHhC--CEEEECCCCCHHHHHHHHHHHHHHhhcccc
Confidence            11222    233333333333333  233345678999999999999998876643

>PRK13947 shikimate kinase; Provisional

Probab=99.62  E-value=4.4e-14  Score=117.29  Aligned_cols=110  Identities=18%  Similarity=0.261  Sum_probs=69.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      +.|+|+|+|||||||+++.|++.+|+.+++.|.+++..      .|..+.+++.. +.....+.....+ ..+..    .
T Consensus         2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~------~g~~~~~~~~~~ge~~~~~~e~~~~-~~l~~----~   70 (171)
T PRK13947          2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKM------TGMTVAEIFEKDGEVRFRSEEKLLV-KKLAR----L   70 (171)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhh------cCCcHHHHHHHhChHHHHHHHHHHH-HHHhh----c
Confidence            46999999999999999999999999999999987664      22233333332 2111111111222 22221    1


Q ss_pred             CcEEE-cC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          164 NGWLL-DG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       164 ~~~Vl-dg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      ...|+ .|  ++........+.+.    +.+|||+++++++.+|+..|.
T Consensus        71 ~~~vi~~g~g~vl~~~~~~~l~~~----~~vv~L~~~~~~l~~Rl~~r~  115 (171)
T PRK13947         71 KNLVIATGGGVVLNPENVVQLRKN----GVVICLKARPEVILRRVGKKK  115 (171)
T ss_pred             CCeEEECCCCCcCCHHHHHHHHhC----CEEEEEECCHHHHHHHhcCCC
Confidence            22333 22  33334445555543    479999999999999998764

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.62  E-value=3.8e-14  Score=117.75  Aligned_cols=164  Identities=15%  Similarity=0.180  Sum_probs=93.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      ..|+|+|++||||||+++.|++++|+++++.|.++....      +..+.+++...   ..+.+...-...+... ....
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~------g~~~~~~~~~~---g~~~~~~~e~~~~~~~-~~~~   72 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS------NMTVAEIVERE---GWAGFRARESAALEAV-TAPS   72 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh------CCCHHHHHHHH---CHHHHHHHHHHHHHHh-cCCC
Confidence            468899999999999999999999999999999887642      22222222211   1122222212222111 1123


Q ss_pred             cEEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccC-C-CC
Q 022042          165 GWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKR-F-DD  240 (303)
Q Consensus       165 ~~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r-~-~d  240 (303)
                      .+|..|  +.........+..    .+++|||++|++++.+|+..|..+.  ++        |.       +... . ++
T Consensus        73 ~vi~~ggg~vl~~~~~~~l~~----~~~~v~l~~~~~~~~~Rl~~r~~~~--~r--------p~-------~~~~~~~~~  131 (171)
T PRK03731         73 TVIATGGGIILTEENRHFMRN----NGIVIYLCAPVSVLANRLEANPEED--QR--------PT-------LTGKPISEE  131 (171)
T ss_pred             eEEECCCCccCCHHHHHHHHh----CCEEEEEECCHHHHHHHHccccccc--cC--------Cc-------CCCCChHHH
Confidence            334344  3333334444443    4589999999999999998763210  00        00       0000 0 01


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          241 TEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       241 ~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                      ..+.+++|...|..        +  ..++||++.++++++++|.+.+.+
T Consensus       132 ~~~~~~~r~~~y~~--------~--a~~~Id~~~~~e~v~~~i~~~l~~  170 (171)
T PRK03731        132 VAEVLAEREALYRE--------V--AHHIIDATQPPSQVVSEILSALAQ  170 (171)
T ss_pred             HHHHHHHHHHHHHH--------h--CCEEEcCCCCHHHHHHHHHHHHhc
Confidence            12222222222221        1  237889999999999999888753

>TIGR00152 dephospho-CoA kinase

Probab=99.61  E-value=5.6e-15  Score=124.76  Aligned_cols=160  Identities=24%  Similarity=0.292  Sum_probs=101.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcC-----CCcCh---------------
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKG-----QLVPD---------------  145 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g-----~~~~~---------------  145 (303)
                      +|+|+|.+||||||+++.|++..|++++++|++.++.+..+.+....+.+.+...     ..+..               
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~   80 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK   80 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence            4889999999999999999998779999999999998888776655555444321     11110               


Q ss_pred             ---H----HHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCcee
Q 022042          146 ---E----IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIY  218 (303)
Q Consensus       146 ---~----~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~  218 (303)
                         .    .+...+...+.+....+..+|++. |.....     .....+|.+|+++++.+++.+|+.+|.         
T Consensus        81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~-pll~e~-----~~~~~~D~vv~V~~~~~~~~~Rl~~R~---------  145 (188)
T TIGR00152        81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDV-PLLFEN-----KLRSLCDRVIVVDVSPQLQLERLMQRD---------  145 (188)
T ss_pred             HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEc-hHhhhC-----CcHHhCCEEEEEECCHHHHHHHHHHcC---------
Confidence               0    111222333333222123455543 322110     111247899999999999999999885         


Q ss_pred             cccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHH
Q 022042          219 HVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQID  284 (303)
Q Consensus       219 ~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~  284 (303)
                                          +.+.+.+.+|+..+......    -...-++|+++++++++.+++.
T Consensus       146 --------------------~~s~~~~~~r~~~q~~~~~~----~~~ad~vI~N~~~~e~l~~~~~  187 (188)
T TIGR00152       146 --------------------NLTEEEVQKRLASQMDIEER----LARADDVIDNSATLADLVKQLE  187 (188)
T ss_pred             --------------------CCCHHHHHHHHHhcCCHHHH----HHhCCEEEECCCCHHHHHHHHh
Confidence                                12355666666665432211    1112367889999999988875

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK04040 adenylate kinase; Provisional

Probab=99.61  E-value=6.6e-14  Score=118.06  Aligned_cols=173  Identities=17%  Similarity=0.170  Sum_probs=101.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh--CCceeehHHHHHHHHHcCCc--chHHHHHHHHcCCCcChHHHHHHHHHHHcCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY--GLVHIAAGDLLRAEIAAGSE--NGKRAKEHMEKGQLVPDEIVVTMVKERLSQP  159 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l--g~~~i~~d~l~~~~~~~~~~--~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~  159 (303)
                      |++|+|+|+|||||||+++.|++++  ++.+++.++++++......-  ....+++    ........+.......+.+.
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~----l~~~~~~~~~~~a~~~i~~~   77 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRK----LPPEEQKELQREAAERIAEM   77 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhh----CChhhhHHHHHHHHHHHHHh
Confidence            6799999999999999999999999  89999999998876544221  1122211    11111112222333333332


Q ss_pred             CCCCCcEEEcCCCCCH--------HHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH
Q 022042          160 DSQENGWLLDGYPRSL--------SQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA  231 (303)
Q Consensus       160 ~~~~~~~Vldg~p~~~--------~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~  231 (303)
                      . .++.+|+|++....        .....+.  ...||.+|+|+++++++++|..+..                      
T Consensus        78 ~-~~~~~~~~~h~~i~~~~g~~~~~~~~~~~--~l~pd~ii~l~a~p~~i~~Rrl~d~----------------------  132 (188)
T PRK04040         78 A-GEGPVIVDTHATIKTPAGYLPGLPEWVLE--ELNPDVIVLIEADPDEILMRRLRDE----------------------  132 (188)
T ss_pred             h-cCCCEEEeeeeeeccCCCCcCCCCHHHHh--hcCCCEEEEEeCCHHHHHHHHhccc----------------------
Confidence            2 24558899842100        0111122  2369999999999999988887420                      


Q ss_pred             hhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEc-CCCCHHHHHHHHHHHH
Q 022042          232 ARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVN-GSVNKEDVFAQIDVAL  287 (303)
Q Consensus       232 ~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id-~~~s~eev~~~I~~~l  287 (303)
                        ...|..+..+.++.+++........+....+..+++|. .++.+++.+++|.++|
T Consensus       133 --~R~R~~es~e~I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii  187 (188)
T PRK04040        133 --TRRRDVETEEDIEEHQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL  187 (188)
T ss_pred             --ccCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence              00133455666666666544433322222232344443 3344888888887765

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.61  E-value=3.5e-14  Score=115.01  Aligned_cols=155  Identities=23%  Similarity=0.317  Sum_probs=94.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |+|+|+|.||+||||+|+.|+ ++|+.+++..+++.+.-     ......+ ......+..+.+...+...+     ...
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~-----~~~~~de-~r~s~~vD~d~~~~~le~~~-----~~~   68 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENG-----LYTEYDE-LRKSVIVDVDKLRKRLEELL-----REG   68 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcC-----CeeccCC-ccceEEeeHHHHHHHHHHHh-----ccC
Confidence            589999999999999999999 89999999998876531     0000000 00011112222222223222     135


Q ss_pred             cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHH
Q 022042          165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEK  244 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~  244 (303)
                      ..|+|++         +......+|+||.|.++++++.+||.+|++++.               .+.+.+          
T Consensus        69 ~~Ivd~H---------~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~e---------------KI~ENv----------  114 (180)
T COG1936          69 SGIVDSH---------LSHLLPDCDLVVVLRADPEVLYERLKGRGYSEE---------------KILENV----------  114 (180)
T ss_pred             CeEeech---------hhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHH---------------HHHHHH----------
Confidence            6888985         232222479999999999999999999975321               111100          


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcceEEEc-CCCCHHHHHHHHHHHHHH
Q 022042          245 VKLRLKTHHHNVEAVLSLYEDVTVEVN-GSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       245 ~~~r~~~~~~~~~~~~~~~~~~~~~Id-~~~s~eev~~~I~~~l~~  289 (303)
                      -.+.+..   ......+.+ +.++.|| .+.+++++++.|.+++..
T Consensus       115 eAEi~~v---i~~EA~E~~-~~v~evdtt~~s~ee~~~~i~~ii~~  156 (180)
T COG1936         115 EAEILDV---ILIEAVERF-EAVIEVDTTNRSPEEVAEEIIDIIGG  156 (180)
T ss_pred             HHHHHHH---HHHHHHHhc-CceEEEECCCCCHHHHHHHHHHHHcc
Confidence            0001111   111223334 4567777 468999999999999874

>PRK00625 shikimate kinase; Provisional

Probab=99.61  E-value=9.1e-14  Score=115.52  Aligned_cols=115  Identities=17%  Similarity=0.180  Sum_probs=72.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |.|+|+|+|||||||+++.|++++|++++++|+++++.....  ....+.+++....   .+.+...-...+..... ..
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~G---e~~fr~~E~~~l~~l~~-~~   74 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYG---EEGFCREEFLALTSLPV-IP   74 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHC---HHHHHHHHHHHHHHhcc-CC
Confidence            469999999999999999999999999999999998753221  1123444443321   12222221122222222 33


Q ss_pred             cEEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          165 GWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       165 ~~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      .+|.+|  .+........+..    ...+|||++|.+++.+|+..|.
T Consensus        75 ~VIs~GGg~~~~~e~~~~l~~----~~~Vv~L~~~~e~l~~Rl~~R~  117 (173)
T PRK00625         75 SIVALGGGTLMIEPSYAHIRN----RGLLVLLSLPIATIYQRLQKRG  117 (173)
T ss_pred             eEEECCCCccCCHHHHHHHhc----CCEEEEEECCHHHHHHHHhcCC
Confidence            455454  2233333333432    3579999999999999999874

>PRK13948 shikimate kinase; Provisional

Probab=99.61  E-value=7.9e-14  Score=116.72  Aligned_cols=165  Identities=18%  Similarity=0.140  Sum_probs=99.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDS  161 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~  161 (303)
                      .+..|+|+|++||||||+++.|++++|+.++++|.++++..      |..+.+++.. |.....+.....+...+..   
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~------g~si~~if~~~Ge~~fR~~E~~~l~~l~~~---   79 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT------GKSIPEIFRHLGEAYFRRCEAEVVRRLTRL---   79 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH------hCCHHHHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence            34689999999999999999999999999999999887753      3344444443 3222222222323332221   


Q ss_pred             CCCcEEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042          162 QENGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD  239 (303)
Q Consensus       162 ~~~~~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~  239 (303)
                       ...+|..|  .+........+.+.    ..+|||+++++++.+|+..+. .|                     +... .
T Consensus        80 -~~~VIa~GgG~v~~~~n~~~l~~~----g~vV~L~~~~e~l~~Rl~~~~-RP---------------------ll~~-~  131 (182)
T PRK13948         80 -DYAVISLGGGTFMHEENRRKLLSR----GPVVVLWASPETIYERTRPGD-RP---------------------LLQV-E  131 (182)
T ss_pred             -CCeEEECCCcEEcCHHHHHHHHcC----CeEEEEECCHHHHHHHhcCCC-CC---------------------CCCC-C
Confidence             23344443  33334444445543    479999999999999994321 11                     1111 1


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcC-CCCHHHHHHHHHHHHHHHH
Q 022042          240 DTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNG-SVNKEDVFAQIDVALTNLL  291 (303)
Q Consensus       240 d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~-~~s~eev~~~I~~~l~~~l  291 (303)
                      +.    ..++...++...+++..   ..++|++ +.+++++.++|.+.+...+
T Consensus       132 ~~----~~~l~~l~~~R~~~Y~~---a~~~i~t~~~~~~ei~~~i~~~l~~~~  177 (182)
T PRK13948        132 DP----LGRIRTLLNEREPVYRQ---ATIHVSTDGRRSEEVVEEIVEKLWAWA  177 (182)
T ss_pred             Ch----HHHHHHHHHHHHHHHHh---CCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            11    12344444444444432   2345664 4799999999999987754

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.60  E-value=3.5e-14  Score=120.47  Aligned_cols=167  Identities=17%  Similarity=0.192  Sum_probs=105.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC-----cC----------------
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VP----------------  144 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~-----~~----------------  144 (303)
                      .|+|+|++||||||+++.|++ +|+.+++.|.+.++.+..+.+....+.+.+.....     +.                
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~   79 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK   79 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence            378999999999999999965 79999999999999887776655555554432211     11                


Q ss_pred             --hHHHHHHHHHH----HcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCcee
Q 022042          145 --DEIVVTMVKER----LSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIY  218 (303)
Q Consensus       145 --~~~~~~~l~~~----l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~  218 (303)
                        ..++...+...    +.... .+..+|+|. |.-.+. . +   ...+|.+||+++|.+++.+|+.+|+         
T Consensus        80 ~L~~i~hP~v~~~~~~~~~~~~-~~~~vi~e~-pLL~E~-~-~---~~~~D~vi~V~a~~e~r~~RL~~R~---------  143 (196)
T PRK14732         80 ALNELIHPLVRKDFQKILQTTA-EGKLVIWEV-PLLFET-D-A---YTLCDATVTVDSDPEESILRTISRD---------  143 (196)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHh-cCCcEEEEe-eeeeEc-C-c---hhhCCEEEEEECCHHHHHHHHHHcC---------
Confidence              11122222222    21111 123455553 321110 0 1   1147999999999999999999884         


Q ss_pred             cccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042          219 HVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQ  293 (303)
Q Consensus       219 ~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~  293 (303)
                                          ..+.+.+..|+.......    +.-...-++|+++++++++..++.+.++++++.
T Consensus       144 --------------------g~s~e~a~~ri~~Q~~~~----~k~~~aD~vI~N~~~~~~l~~~v~~l~~~~~~~  194 (196)
T PRK14732        144 --------------------GMKKEDVLARIASQLPIT----EKLKRADYIVRNDGNREGLKEECKILYSTLLKK  194 (196)
T ss_pred             --------------------CCCHHHHHHHHHHcCCHH----HHHHhCCEEEECCCCHHHHHHHHHHHHHHHHHh
Confidence                                123566666665543211    111112367889999999999999998877653

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.59  E-value=2e-14  Score=121.88  Aligned_cols=166  Identities=18%  Similarity=0.227  Sum_probs=88.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC---ceeehHHHHHHHHHcCCcchHHHHHHHHcCC--CcChHH---H-----HH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGL---VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ--LVPDEI---V-----VT  150 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~---~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~--~~~~~~---~-----~~  150 (303)
                      +++|+|+|++||||||+++.|+++++.   .++-.      ....+++.+..+++++..+.  ...+..   +     ..
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~   76 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT------REPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHE   76 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE------eCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence            579999999999999999999999843   22211      00112344445554433221  111110   0     01


Q ss_pred             HHHHHHcCCCCCCCcEEEcCCC----------CC--HHHHHHHHHhCC--CCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042          151 MVKERLSQPDSQENGWLLDGYP----------RS--LSQATALKKYGF--QPDLFILLEVPEDTLVERVVGRRLDPVTGK  216 (303)
Q Consensus       151 ~l~~~l~~~~~~~~~~Vldg~p----------~~--~~~~~~l~~~~~--~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~  216 (303)
                      .+.+.+......+..+|+|.|.          +.  ..+...+.....  .||++|||+++++++.+|+..|...     
T Consensus        77 ~~~~~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~-----  151 (195)
T TIGR00041        77 HLEDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGEL-----  151 (195)
T ss_pred             HHHHHHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCc-----
Confidence            1122222222224567788532          11  122233333222  4999999999999999999988520     


Q ss_pred             eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHH
Q 022042          217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQI  283 (303)
Q Consensus       217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I  283 (303)
                                     ++   ......+.    ++...+.+..+.+. ...+++||+++++++|.++|
T Consensus       152 ---------------~~---~~~~~~~~----~~~~~~~y~~~~~~-~~~~~~id~~~~~e~v~~~i  195 (195)
T TIGR00041       152 ---------------DR---EEFEKLDF----FEKVRQRYLELADK-EKSIHVIDATNSVEEVEQDI  195 (195)
T ss_pred             ---------------ch---HHHHHHHH----HHHHHHHHHHHHcC-CCcEEEEeCCCCHHHHHhhC
Confidence                           00   00000111    11122222333332 33678899999999998764

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.59  E-value=2.1e-13  Score=112.99  Aligned_cols=113  Identities=25%  Similarity=0.306  Sum_probs=71.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |+|+|+|++||||||+|+.|++++|+++++.++++++...........+........     .+...+...+......+.
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~   75 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENP-----EIDKKIDRRIHEIALKEK   75 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCc-----HHHHHHHHHHHHHHhcCC
Confidence            479999999999999999999999999999998887754432111111111111111     111222222222211246


Q ss_pred             cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      .+|++|.-...     +.  ...+|++|||++|.+++.+|+.+|.
T Consensus        76 ~~Vi~g~~~~~-----~~--~~~~d~~v~v~a~~~~r~~R~~~R~  113 (171)
T TIGR02173        76 NVVLESRLAGW-----IV--REYADVKIWLKAPLEVRARRIAKRE  113 (171)
T ss_pred             CEEEEecccce-----ee--cCCcCEEEEEECCHHHHHHHHHHcc
Confidence            78999842221     11  2247899999999999999999885

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.58  E-value=1.7e-13  Score=113.76  Aligned_cols=168  Identities=21%  Similarity=0.274  Sum_probs=94.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      ..++.|+|+|++||||||+|+.|++++|+.+++.|+++....  +....    +++.. |.....+.....+......  
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~--g~~~~----~~~~~~g~~~~~~~~~~~~~~l~~~--   73 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARA--GKSIP----EIFEEEGEAAFRELEEEVLAELLAR--   73 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc--CCCHH----HHHHHHCHHHHHHHHHHHHHHHHhc--
Confidence            356799999999999999999999999999999999886532  22222    22211 2111111122222222221  


Q ss_pred             CCCCcEEEcCC--CCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCC
Q 022042          161 SQENGWLLDGY--PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF  238 (303)
Q Consensus       161 ~~~~~~Vldg~--p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~  238 (303)
                        ...+|..|.  .........+..    ...+|||++|.+.+.+|+.+|...+                     +.. .
T Consensus        74 --~~~vi~~g~~~~~~~~~r~~l~~----~~~~v~l~~~~~~~~~R~~~~~~r~---------------------~~~-~  125 (175)
T PRK00131         74 --HNLVISTGGGAVLREENRALLRE----RGTVVYLDASFEELLRRLRRDRNRP---------------------LLQ-T  125 (175)
T ss_pred             --CCCEEEeCCCEeecHHHHHHHHh----CCEEEEEECCHHHHHHHhcCCCCCC---------------------cCC-C
Confidence              223444331  112222233322    3489999999999999998764210                     000 1


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEc-CCCCHHHHHHHHHHHHHHHH
Q 022042          239 DDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVN-GSVNKEDVFAQIDVALTNLL  291 (303)
Q Consensus       239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id-~~~s~eev~~~I~~~l~~~l  291 (303)
                      ++..+.    +..+.....+....+.  .+.|| ++.+++++.+.|.+.|+.+.
T Consensus       126 ~~~~~~----~~~~~~~~~~~~~~~~--dl~idt~~~~~~e~~~~I~~~v~~~~  173 (175)
T PRK00131        126 NDPKEK----LRDLYEERDPLYEEVA--DITVETDGRSPEEVVNEILEKLEAAW  173 (175)
T ss_pred             CChHHH----HHHHHHHHHHHHHhhc--CeEEeCCCCCHHHHHHHHHHHHHhhc
Confidence            112222    2222222223222221  24455 56899999999999998654

>PRK13976 thymidylate kinase; Provisional

Probab=99.58  E-value=4.7e-14  Score=120.81  Aligned_cols=173  Identities=14%  Similarity=0.090  Sum_probs=99.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC-----ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHH-HH-------HH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGL-----VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI-VV-------TM  151 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~-----~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~-~~-------~~  151 (303)
                      ++|+|+|..||||||+++.|++.|.-     .++-.      ....++.+++.+++++.....+.... ..       ..
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~------~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~   74 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT------REPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREH   74 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe------eCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH
Confidence            47999999999999999999998732     11100      11234556666766665321122111 00       11


Q ss_pred             HHHHHcCCCCCCCcEEEcCCCC------------CHHHHHHHHH--hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCce
Q 022042          152 VKERLSQPDSQENGWLLDGYPR------------SLSQATALKK--YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKI  217 (303)
Q Consensus       152 l~~~l~~~~~~~~~~Vldg~p~------------~~~~~~~l~~--~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~  217 (303)
                      +.+.+......+..+|.|.|..            ...+...+..  ....||++|||++|+++..+|+.+++.+      
T Consensus        75 ~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e------  148 (209)
T PRK13976         75 FVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGYE------  148 (209)
T ss_pred             HHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccchh------
Confidence            1111221112356677776432            2223333332  1347999999999999999998543210      


Q ss_pred             ecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcC---CCC---HHHHHHHHHHHHHHHH
Q 022042          218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNG---SVN---KEDVFAQIDVALTNLL  291 (303)
Q Consensus       218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~---~~s---~eev~~~I~~~l~~~l  291 (303)
                                           ....+.++    ...+.+..+...+.+.++.||+   +++   +++|.++|.+.|.+.+
T Consensus       149 ---------------------~~~~~~l~----~v~~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~  203 (209)
T PRK13976        149 ---------------------FMDLEFYD----KVRKGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVT  203 (209)
T ss_pred             ---------------------cccHHHHH----HHHHHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHH
Confidence                                 01123322    2233333444455556777887   345   9999999999999888


Q ss_pred             Hhh
Q 022042          292 EQR  294 (303)
Q Consensus       292 ~~~  294 (303)
                      ..+
T Consensus       204 ~~~  206 (209)
T PRK13976        204 KDK  206 (209)
T ss_pred             HHh
Confidence            543

>PLN02199 shikimate kinase

Probab=99.58  E-value=3.7e-13  Score=119.16  Aligned_cols=182  Identities=15%  Similarity=0.154  Sum_probs=110.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDS  161 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~  161 (303)
                      ....|+|+|.+||||||+++.|++.+|+++|++|.++++...     |..+.+++.. |.....+...+.+.+..    .
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E~e~L~~L~----~  171 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKETDALKKLS----S  171 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHHHHHHHHHH----h
Confidence            356899999999999999999999999999999999988632     3344444443 32222222333333322    1


Q ss_pred             CCCcEEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCC-
Q 022042          162 QENGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF-  238 (303)
Q Consensus       162 ~~~~~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~-  238 (303)
                      ....+|-.|  .+........+. .    ..+|||+++.+++.+|+.....+   .|                .|.... 
T Consensus       172 ~~~~VIStGGG~V~~~~n~~~L~-~----G~vV~Ldas~E~l~~RL~~~~~~---~R----------------PLL~~~~  227 (303)
T PLN02199        172 RYQVVVSTGGGAVIRPINWKYMH-K----GISIWLDVPLEALAHRIAAVGTD---SR----------------PLLHDES  227 (303)
T ss_pred             cCCEEEECCCcccCCHHHHHHHh-C----CeEEEEECCHHHHHHHHhhcCCC---CC----------------CcCCCCC
Confidence            123344444  223333333343 2    37999999999999999852110   00                111111 


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEc-------------CCCCHHHHHHHHHHHHHHHHHhhhhcccc
Q 022042          239 DDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVN-------------GSVNKEDVFAQIDVALTNLLEQRKSALGS  300 (303)
Q Consensus       239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id-------------~~~s~eev~~~I~~~l~~~l~~~~~~~~~  300 (303)
                      .+.......++...++...+++.. .+  +.|+             .+.++++++.+|.+.+..++.+.+.+..+
T Consensus       228 ~d~~~~~~~~L~~L~~~R~plY~~-Ad--~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~~~~~~~~  299 (303)
T PLN02199        228 GDAYSVAFKRLSAIWDERGEAYTN-AN--ARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKEETMEIP  299 (303)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHh-CC--EEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhhccccccC
Confidence            111111234555556666666555 33  3344             45899999999999999999876654443

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=99.58  E-value=1.3e-13  Score=113.87  Aligned_cols=169  Identities=24%  Similarity=0.261  Sum_probs=116.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHH----------------
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI----------------  147 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~----------------  147 (303)
                      |.+|+++|..||||||+++.+. ++|+++|++|.+.|+..+++++..+.+.+.|......++..                
T Consensus         1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~   79 (225)
T KOG3220|consen    1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK   79 (225)
T ss_pred             CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence            4689999999999999999995 89999999999999999999998888888776653333211                


Q ss_pred             ------------HHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042          148 ------------VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTG  215 (303)
Q Consensus       148 ------------~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g  215 (303)
                                  ...++++-+.-.....+.+|+| .|.-++- . +.+   ....+|.+.||.++-++|+.+|+      
T Consensus        80 r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~-~-~~~---~~~~tvvV~cd~~~Ql~Rl~~Rd------  147 (225)
T KOG3220|consen   80 RQALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA-K-LLK---ICHKTVVVTCDEELQLERLVERD------  147 (225)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH-h-HHh---heeeEEEEEECcHHHHHHHHHhc------
Confidence                        1111122111122222334444 4432222 1 111   24578999999999999999985      


Q ss_pred             ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042          216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~  292 (303)
                                             ...++..+.|+..+....+.....    -++||+++++++..+++..++..+-+
T Consensus       148 -----------------------~lse~dAe~Rl~sQmp~~~k~~~a----~~Vi~Nng~~~~l~~qv~~v~~~~~~  197 (225)
T KOG3220|consen  148 -----------------------ELSEEDAENRLQSQMPLEKKCELA----DVVIDNNGSLEDLYEQVEKVLALLQK  197 (225)
T ss_pred             -----------------------cccHHHHHHHHHhcCCHHHHHHhh----heeecCCCChHHHHHHHHHHHHHhcc
Confidence                                   234677777777766544433322    36899999999999999988876544

>PRK07933 thymidylate kinase; Validated

Probab=99.57  E-value=8.8e-14  Score=119.69  Aligned_cols=177  Identities=19%  Similarity=0.178  Sum_probs=93.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHHHHHHHcCCcchHHHHHHHHcCC--CcChHHHHHHH--H----
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ--LVPDEIVVTMV--K----  153 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~--~~~~~~~~~~l--~----  153 (303)
                      |+|+|+|+.||||||+++.|+++|   |..++-..    +....+++.++.+++.+....  ...+.....++  .    
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~----~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~   76 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLA----FPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG   76 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEe----cCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence            589999999999999999999998   33332110    000023445555555554321  10000000000  0    


Q ss_pred             --HHHcCCCCCCCcEEEcCCCCCH-----------------HHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCC
Q 022042          154 --ERLSQPDSQENGWLLDGYPRSL-----------------SQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLD  211 (303)
Q Consensus       154 --~~l~~~~~~~~~~Vldg~p~~~-----------------~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~  211 (303)
                        ..+......+..+|.|.|...-                 .+...+..   ....||++||||+++++..+|+.+|+..
T Consensus        77 ~~~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~  156 (213)
T PRK07933         77 ARDELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQ  156 (213)
T ss_pred             hHHHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhccc
Confidence              1111111225567778743211                 11122222   1237999999999999999999988521


Q ss_pred             CCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHh-hcceEEEcCCCCHHHHHHHHHHHH
Q 022042          212 PVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY-EDVTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       212 ~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~-~~~~~~Id~~~s~eev~~~I~~~l  287 (303)
                      . .+..             .+    +.....+..++    ..+.+..+.+.+ ...+++||++.++++|.++|.+.|
T Consensus       157 ~-~~~~-------------~d----~~E~~~~f~~~----v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~  211 (213)
T PRK07933        157 D-ADRA-------------RD----AYERDDGLQQR----TGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL  211 (213)
T ss_pred             c-CCcc-------------cc----cccccHHHHHH----HHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence            0 0000             00    11111222222    222233333332 447788999999999999998766

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=99.56  E-value=1.4e-13  Score=108.37  Aligned_cols=108  Identities=24%  Similarity=0.377  Sum_probs=76.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      +.|+|+|.||+||||+|++||+.+|+.+|.+++++++..-.     ....+- .+...+.++.+...+...+.+     +
T Consensus         8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~-----~gyDE~-y~c~i~DEdkv~D~Le~~m~~-----G   76 (176)
T KOG3347|consen    8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLY-----EGYDEE-YKCHILDEDKVLDELEPLMIE-----G   76 (176)
T ss_pred             CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcch-----hccccc-ccCccccHHHHHHHHHHHHhc-----C
Confidence            48999999999999999999999999999999999874110     000000 011234556666777777654     6


Q ss_pred             cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042          165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL  210 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~  210 (303)
                      |.|+|-+....     |.+.  .+|+|+.|.||-+++++||..|.+
T Consensus        77 g~IVDyHgCd~-----Fper--wfdlVvVLr~~~s~LY~RL~sRgY  115 (176)
T KOG3347|consen   77 GNIVDYHGCDF-----FPER--WFDLVVVLRTPNSVLYDRLKSRGY  115 (176)
T ss_pred             CcEEeecccCc-----cchh--heeEEEEEecCchHHHHHHHHcCC
Confidence            78888532221     1111  378999999999999999999974

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.56  E-value=2.8e-14  Score=119.23  Aligned_cols=153  Identities=22%  Similarity=0.316  Sum_probs=93.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC-----cCh--------------
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VPD--------------  145 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~-----~~~--------------  145 (303)
                      |+|+|+|..||||||+++.|++ +|++++++|.+.++.+..+.+....+.+.+.....     +..              
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~   79 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL   79 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence            5899999999999999999988 99999999999999888777766666666543221     111              


Q ss_pred             ----HHHHHHH----HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCce
Q 022042          146 ----EIVVTMV----KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKI  217 (303)
Q Consensus       146 ----~~~~~~l----~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~  217 (303)
                          .++...+    ...+..... ...+|+|. |.-.+.  .+.   ..+|.+|++.||.++..+|+.+|+        
T Consensus        80 ~~L~~iihP~I~~~~~~~~~~~~~-~~~~v~e~-pLL~E~--~~~---~~~D~vi~V~a~~e~ri~Rl~~R~--------  144 (180)
T PF01121_consen   80 KKLENIIHPLIREEIEKFIKRNKS-EKVVVVEI-PLLFES--GLE---KLCDEVIVVYAPEEIRIKRLMERD--------  144 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHS-TSEEEEE--TTTTTT--TGG---GGSSEEEEEE--HHHHHHHHHHHH--------
T ss_pred             HHHHHHHhHHHHHHHHHHHHhccC-CCEEEEEc-chhhhh--hHh---hhhceEEEEECCHHHHHHHHHhhC--------
Confidence                1122222    222222221 24566664 211110  011   247999999999999999999884        


Q ss_pred             ecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHH
Q 022042          218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKED  278 (303)
Q Consensus       218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~ee  278 (303)
                                           +-+.+.+..|+..+....+....    .-++|+|++++++
T Consensus       145 ---------------------~~~~~~~~~ri~~Q~~~~~k~~~----ad~vI~N~g~~~~  180 (180)
T PF01121_consen  145 ---------------------GLSEEEAEARIASQMPDEEKRKR----ADFVIDNNGSLEE  180 (180)
T ss_dssp             ---------------------TSTHHHHHHHHHTS--HHHHHHH-----SEEEE-SSHHH-
T ss_pred             ---------------------CCcHHHHHHHHHhCCCHHHHHHh----CCEEEECCCCCCC
Confidence                                 23366677777766554443222    2367899988764

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.55  E-value=4.2e-13  Score=111.69  Aligned_cols=162  Identities=17%  Similarity=0.234  Sum_probs=94.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      +..|+|.|++||||||+++.|++.+|+.+++.|..+.+..  +..    +..++.. |.....+.....+.. +..    
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~--g~~----i~~~~~~~g~~~fr~~e~~~l~~-l~~----   72 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GAD----IGWVFDVEGEEGFRDREEKVINE-LTE----   72 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHh--CcC----HhHHHHHhCHHHHHHHHHHHHHH-HHh----
Confidence            4579999999999999999999999999999998766532  111    2222221 211111111122222 221    


Q ss_pred             CCcEEEc-CC--CCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042          163 ENGWLLD-GY--PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD  239 (303)
Q Consensus       163 ~~~~Vld-g~--p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~  239 (303)
                      ...+|+. |.  +........+.+    .+.+|||++|.+++.+|+..+...|.                     .. ..
T Consensus        73 ~~~~vi~~ggg~v~~~~~~~~l~~----~~~vv~L~~~~e~~~~Ri~~~~~rP~---------------------~~-~~  126 (172)
T PRK05057         73 KQGIVLATGGGSVKSRETRNRLSA----RGVVVYLETTIEKQLARTQRDKKRPL---------------------LQ-VD  126 (172)
T ss_pred             CCCEEEEcCCchhCCHHHHHHHHh----CCEEEEEeCCHHHHHHHHhCCCCCCC---------------------CC-CC
Confidence            2234443 32  223333445554    34899999999999999976542211                     11 01


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcC-CCCHHHHHHHHHHHHH
Q 022042          240 DTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNG-SVNKEDVFAQIDVALT  288 (303)
Q Consensus       240 d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~-~~s~eev~~~I~~~l~  288 (303)
                      +..+    .+...++...+++..+.+  ++||+ ..+++++.++|.+.+.
T Consensus       127 ~~~~----~~~~l~~~R~~~Y~~~Ad--~~idt~~~s~~ei~~~i~~~l~  170 (172)
T PRK05057        127 DPRE----VLEALANERNPLYEEIAD--VTIRTDDQSAKVVANQIIHMLE  170 (172)
T ss_pred             CHHH----HHHHHHHHHHHHHHhhCC--EEEECCCCCHHHHHHHHHHHHh
Confidence            1111    244444555555555433  45665 4799999999888775

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.54  E-value=1e-13  Score=129.77  Aligned_cols=168  Identities=18%  Similarity=0.259  Sum_probs=103.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC-----cCh-------------
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VPD-------------  145 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~-----~~~-------------  145 (303)
                      |++|+|+|++||||||+++.|++ +|+++|++|.+.++.+..+......+.+.+..+..     +..             
T Consensus         1 m~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~   79 (395)
T PRK03333          1 MLRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEA   79 (395)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHH
Confidence            45799999999999999999987 89999999999999888765544444444322211     111             


Q ss_pred             -----HHHHHHHH----HHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042          146 -----EIVVTMVK----ERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK  216 (303)
Q Consensus       146 -----~~~~~~l~----~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~  216 (303)
                           .++...+.    +.+...  .++.+|+.+.|.-.+..  +   ...+|.+|||++|.+++++|+.+|+.      
T Consensus        80 ~~~le~i~hP~I~~~i~~~i~~~--~~~~vvv~eipLL~E~~--~---~~~~D~iI~V~ap~e~ri~Rl~~rRg------  146 (395)
T PRK03333         80 RAVLNGIVHPLVGARRAELIAAA--PEDAVVVEDIPLLVESG--M---APLFHLVVVVDADVEVRVRRLVEQRG------  146 (395)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhc--CCCCEEEEEeeeeecCC--c---hhhCCEEEEEECCHHHHHHHHHhcCC------
Confidence                 11122222    222222  13456665544221110  1   12478999999999999999988531      


Q ss_pred             eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042          217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~  292 (303)
                                             .+.+....++..+......  ...  ..++|+++++++++..++.+.++.++.
T Consensus       147 -----------------------~s~~~a~~ri~~Q~~~e~k--~~~--AD~vIdN~~s~e~l~~~v~~~l~~~~~  195 (395)
T PRK03333        147 -----------------------MAEADARARIAAQASDEQR--RAV--ADVWLDNSGTPDELVEAVRALWADRLL  195 (395)
T ss_pred             -----------------------CCHHHHHHHHHhcCChHHH--HHh--CCEEEECCCCHHHHHHHHHHHHHHHHh
Confidence                                   1123333444332211111  111  236788999999999999988877654

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.53  E-value=4.7e-14  Score=118.22  Aligned_cols=116  Identities=23%  Similarity=0.356  Sum_probs=76.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC-----cC----------------
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VP----------------  144 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~-----~~----------------  144 (303)
                      +|+|+|++||||||+++.|++ +|++++++|++.++....+......+.+.+.....     +.                
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~   79 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence            488999999999999999998 99999999999999888777776666666543221     11                


Q ss_pred             --hHHHHHHHHHHH----cCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          145 --DEIVVTMVKERL----SQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       145 --~~~~~~~l~~~l----~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                        ...+...+...+    ..... ...+|+|. |...+..  +.   ..+|.+|++++|.+++.+|+..|+
T Consensus        80 ~l~~i~hp~i~~~~~~~~~~~~~-~~~vive~-plL~e~~--~~---~~~D~vv~V~a~~~~ri~Rl~~Rd  143 (179)
T cd02022          80 KLEAITHPLIRKEIEEQLAEARK-EKVVVLDI-PLLFETG--LE---KLVDRVIVVDAPPEIQIERLMKRD  143 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccC-CCEEEEEe-hHhhcCC--cH---HhCCeEEEEECCHHHHHHHHHHcC
Confidence              112222222222    22111 23455554 2111100  11   247899999999999999999885

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.53  E-value=5.2e-14  Score=127.37  Aligned_cols=161  Identities=16%  Similarity=0.105  Sum_probs=98.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      +++|++.|+|||||||+|+.|++++ ++.+++.|++.+.. ......+..  .+...    ....+.......+......
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~-~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~l~~   74 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSL-FGHGEWGEY--KFTKE----KEDLVTKAQEAAALAALKS   74 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHh-cCCCccccc--ccChH----HHHHHHHHHHHHHHHHHHc
Confidence            3689999999999999999999999 89999998865443 221111100  00000    0111112222222221123


Q ss_pred             CCcEEEcCCCCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042          163 ENGWLLDGYPRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD  239 (303)
Q Consensus       163 ~~~~Vldg~p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~  239 (303)
                      +..+|+|+++....+...|...   ....-.+|+|+++.+++.+|+.+|..+                           .
T Consensus        75 g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~---------------------------~  127 (300)
T PHA02530         75 GKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGER---------------------------A  127 (300)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcC---------------------------C
Confidence            5779999988877777665442   112223799999999999999998522                           1


Q ss_pred             CcHHHHH---HHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHH
Q 022042          240 DTEEKVK---LRLKTHHHNVEAVLSLYED--VTVEVNGSVNKED  278 (303)
Q Consensus       240 d~~e~~~---~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~ee  278 (303)
                      ...+.++   +|++.|.....+++..+..  .++.+|.++++.+
T Consensus       128 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~  171 (300)
T PHA02530        128 VPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAK  171 (300)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence            2244444   6777777666666666643  4666777766554

>PRK06762 hypothetical protein; Provisional

Probab=99.52  E-value=2.5e-13  Score=112.28  Aligned_cols=156  Identities=15%  Similarity=0.200  Sum_probs=91.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh--CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY--GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS  161 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l--g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~  161 (303)
                      |++|+|+|+|||||||+|+.|++++  ++.+++.|.+.+.........          + ....+.+.......+.    
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~----------~-~~~~~~~~~~~~~~~~----   66 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGP----------G-NLSIDLIEQLVRYGLG----   66 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCC----------C-CcCHHHHHHHHHHHHh----
Confidence            5689999999999999999999999  566777766654332110000          0 0111222222222222    


Q ss_pred             CCCcEEEcCCCCCHHH---HHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCC
Q 022042          162 QENGWLLDGYPRSLSQ---ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF  238 (303)
Q Consensus       162 ~~~~~Vldg~p~~~~~---~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~  238 (303)
                      .+..+|+|+.-.....   ...+.+....+..+|||++|.+++.+|..+|...                          .
T Consensus        67 ~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~--------------------------~  120 (166)
T PRK06762         67 HCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKS--------------------------H  120 (166)
T ss_pred             CCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccccc--------------------------c
Confidence            2566888885222222   2333333344778999999999999999988520                          0


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHH
Q 022042          239 DDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l  287 (303)
                      ...++.+..+++..    +.+ ..+  ..+.++.+.++++|+++|...+
T Consensus       121 ~~~~~~l~~~~~~~----~~~-~~~--~~~~~~~~~~~~~v~~~i~~~~  162 (166)
T PRK06762        121 EFGEDDMRRWWNPH----DTL-GVI--GETIFTDNLSLKDIFDAILTDI  162 (166)
T ss_pred             cCCHHHHHHHHhhc----CCc-CCC--CeEEecCCCCHHHHHHHHHHHh
Confidence            11133333333221    111 011  2245567789999999998765

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.52  E-value=1.2e-13  Score=108.92  Aligned_cols=156  Identities=19%  Similarity=0.196  Sum_probs=99.7

Q ss_pred             EcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHH---HHHHHHHHHcCCCCCCCcE
Q 022042           90 SGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI---VVTMVKERLSQPDSQENGW  166 (303)
Q Consensus        90 ~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~l~~~l~~~~~~~~~~  166 (303)
                      +|..||||||+++.|++++|+.+|+-|++......          +.|..|.++.|+.   ++..+.+.+......++..
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi----------~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~   70 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANI----------EKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV   70 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHH----------HHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCce
Confidence            48999999999999999999999999988755322          2678898888775   4444455555433334434


Q ss_pred             EEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHH
Q 022042          167 LLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVK  246 (303)
Q Consensus       167 Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~  246 (303)
                      |+-+-.........+...... -.+|||+.+.+++.+|+..|..|.+.......+|         +-|+....       
T Consensus        71 vi~CSALKr~YRD~LR~~~~~-~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQf---------a~LE~P~~-------  133 (161)
T COG3265          71 VIACSALKRSYRDLLREANPG-LRFVYLDGDFDLILERMKARKGHFMPASLLDSQF---------ATLEEPGA-------  133 (161)
T ss_pred             EEecHHHHHHHHHHHhccCCC-eEEEEecCCHHHHHHHHHhcccCCCCHHHHHHHH---------HHhcCCCC-------
Confidence            443321222222223332211 3589999999999999999986644221111000         00111101       


Q ss_pred             HHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          247 LRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       247 ~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                                       +..++.||.+.+++++++++...|..
T Consensus       134 -----------------de~vi~idi~~~~e~vv~~~~~~l~~  159 (161)
T COG3265         134 -----------------DEDVLTIDIDQPPEEVVAQALAWLKE  159 (161)
T ss_pred             -----------------CCCEEEeeCCCCHHHHHHHHHHHHhc
Confidence                             11478899999999999999888764

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=99.51  E-value=7.6e-14  Score=116.81  Aligned_cols=31  Identities=26%  Similarity=0.418  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      ..++|+|.|+.|+||||+|+.|+++||..++
T Consensus         3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~   33 (216)
T COG1428           3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVF   33 (216)
T ss_pred             cccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence            3579999999999999999999999997554

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=99.51  E-value=1e-13  Score=116.82  Aligned_cols=160  Identities=22%  Similarity=0.241  Sum_probs=92.1

Q ss_pred             EEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHH------------HHHHHHHHH
Q 022042           89 ISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI------------VVTMVKERL  156 (303)
Q Consensus        89 I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~------------~~~~l~~~l  156 (303)
                      |+|..||||||+++.|++++....+..   +......+++.|..+++++..........            +...+...+
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~---~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l   77 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYKV---IITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPAL   77 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEEE---EEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCcc---cccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999983222110   00001123445556666655322222211            112223333


Q ss_pred             cCCCCCCCcEEEcCCC------------CCHHHHHHHHHhCC--CCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccC
Q 022042          157 SQPDSQENGWLLDGYP------------RSLSQATALKKYGF--QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKY  222 (303)
Q Consensus       157 ~~~~~~~~~~Vldg~p------------~~~~~~~~l~~~~~--~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~  222 (303)
                      ..    +..+|+|.|-            ........+.....  .||++|||++++++..+|+.+|...           
T Consensus        78 ~~----g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~-----------  142 (186)
T PF02223_consen   78 KR----GKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEK-----------  142 (186)
T ss_dssp             HT----TSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSST-----------
T ss_pred             cC----CCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCcc-----------
Confidence            32    6678888521            12334433443322  8999999999999999999998620           


Q ss_pred             CCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHH
Q 022042          223 SPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQI  283 (303)
Q Consensus       223 ~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I  283 (303)
                                      ++..+.-...+...++.+..+.+ +...+++||++.++++|.++|
T Consensus       143 ----------------~~~~~~~~~~~~~~~~~y~~l~~-~~~~~~iid~~~~~e~v~~~I  186 (186)
T PF02223_consen  143 ----------------DDEEEEDLEYLRRVREAYLELAK-DPNNWVIIDASRSIEEVHEQI  186 (186)
T ss_dssp             ----------------TTTTTHHHHHHHHHHHHHHHHHH-TTTTEEEEETTS-HHHHHHHH
T ss_pred             ----------------chHHHHHHHHHHHHHHHHHHHHc-CCCCEEEEECCCCHHHHHhhC
Confidence                            01111222234444444555555 566889999999999999886

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.49  E-value=2.2e-13  Score=107.90  Aligned_cols=120  Identities=23%  Similarity=0.280  Sum_probs=82.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHH---HHHHHHHHcCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIV---VTMVKERLSQPD  160 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~---~~~l~~~l~~~~  160 (303)
                      +-.|+|.|++||||||+++.|+++|++.+++.|++.....          .+.+..|.++.|+..   ...+...+....
T Consensus        12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~N----------veKM~~GipLnD~DR~pWL~~i~~~~~~~l   81 (191)
T KOG3354|consen   12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPAN----------VEKMTQGIPLNDDDRWPWLKKIAVELRKAL   81 (191)
T ss_pred             ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHH----------HHHHhcCCCCCcccccHHHHHHHHHHHHHh
Confidence            3489999999999999999999999999999998865543          236788888877653   333333333333


Q ss_pred             CCCCcEEEcCCCCCHHHHHHHHH------hCCCC---cEEEEEEcCHHHHHHHHhcCCCCCC
Q 022042          161 SQENGWLLDGYPRSLSQATALKK------YGFQP---DLFILLEVPEDTLVERVVGRRLDPV  213 (303)
Q Consensus       161 ~~~~~~Vldg~p~~~~~~~~l~~------~~~~p---d~vI~L~~~~e~~~~Rl~~R~~~~~  213 (303)
                      ..++++|+-+-.........+..      .+..|   -.+|||.++.+++.+|+..|..|.+
T Consensus        82 ~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFM  143 (191)
T KOG3354|consen   82 ASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFM  143 (191)
T ss_pred             hcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccC
Confidence            34788888763222222222332      11122   3589999999999999999986544

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.48  E-value=3.2e-12  Score=116.10  Aligned_cols=168  Identities=14%  Similarity=0.149  Sum_probs=96.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDS  161 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~  161 (303)
                      ....|+|+|++||||||+++.|++++|++++++|..+.+.      .|..+.+++.. |...........+...+..   
T Consensus       132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~------~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~---  202 (309)
T PRK08154        132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIERE------AGLSVSEIFALYGQEGYRRLERRALERLIAE---  202 (309)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHH------hCCCHHHHHHHHCHHHHHHHHHHHHHHHHhh---
Confidence            4468999999999999999999999999999999877653      22223333322 2111112222223332322   


Q ss_pred             CCCcEEE-cCC--CCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCC
Q 022042          162 QENGWLL-DGY--PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF  238 (303)
Q Consensus       162 ~~~~~Vl-dg~--p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~  238 (303)
                       ...+|+ .|.  +........+..    ..++|||++|.+++.+|+.+|.....                    +.. .
T Consensus       203 -~~~~VI~~Ggg~v~~~~~~~~l~~----~~~~V~L~a~~e~~~~Rl~~r~~~rp--------------------~~~-~  256 (309)
T PRK08154        203 -HEEMVLATGGGIVSEPATFDLLLS----HCYTVWLKASPEEHMARVRAQGDLRP--------------------MAD-N  256 (309)
T ss_pred             -CCCEEEECCCchhCCHHHHHHHHh----CCEEEEEECCHHHHHHHHhcCCCCCC--------------------CCC-C
Confidence             222344 432  222222223332    34799999999999999988742100                    000 0


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCC-CHHHHHHHHHHHHHHHHH
Q 022042          239 DDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSV-NKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~-s~eev~~~I~~~l~~~l~  292 (303)
                      ++..+.+++.+    ....++++.   .-++||++. +++++.++|...+..++.
T Consensus       257 ~~~~e~i~~~~----~~R~~~y~~---ad~~I~t~~~s~ee~~~~I~~~l~~~~~  304 (309)
T PRK08154        257 REAMEDLRRIL----ASREPLYAR---ADAVVDTSGLTVAQSLARLRELVRPALG  304 (309)
T ss_pred             CChHHHHHHHH----HHHHHHHHh---CCEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence            11223333322    222333333   224567654 999999999999977653

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.45  E-value=3.7e-12  Score=108.03  Aligned_cols=124  Identities=13%  Similarity=0.130  Sum_probs=74.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcch-HHHHHHHHcCCCcCh----H----------H
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENG-KRAKEHMEKGQLVPD----E----------I  147 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~-~~i~~~~~~g~~~~~----~----------~  147 (303)
                      .+++|+|.|+|||||||+|+.|++++|+.++..+|++++.+......+ ......+..|..+++    .          .
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~   81 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA   81 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence            567999999999999999999999999999999999999877533322 111111111111111    1          1


Q ss_pred             HHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEc-CHHHHHHHHhcCC
Q 022042          148 VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEV-PEDTLVERVVGRR  209 (303)
Q Consensus       148 ~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~-~~e~~~~Rl~~R~  209 (303)
                      +..-+...+......+..+|+|+..............+   ..+++|.+ +++...+|+..|.
T Consensus        82 v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~~~---v~~i~l~v~d~e~lr~Rl~~R~  141 (197)
T PRK12339         82 IMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRTNN---IRAFYLYIRDAELHRSRLADRI  141 (197)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHhcC---eEEEEEEeCCHHHHHHHHHHHh
Confidence            11111111222222377899998544444433222222   24566655 6778889999886

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=99.45  E-value=2.2e-12  Score=111.61  Aligned_cols=124  Identities=22%  Similarity=0.257  Sum_probs=66.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHH--HHHcCCcchH------HHHHHHHcCC---CcChHHHHHHH--
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRA--EIAAGSENGK------RAKEHMEKGQ---LVPDEIVVTMV--  152 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~--~~~~~~~~~~------~i~~~~~~g~---~~~~~~~~~~l--  152 (303)
                      +|+|.|..||||||+++.|+++++..++........  ....+...++      .++++..+..   .........++  
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~   80 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS   80 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence            488999999999999999999998755533211100  0011122221      1333333221   11111111111  


Q ss_pred             -----HHHHcCCCCCCCcEEEcCCCCCH------------------HHHHHHHH----hCCCCcEEEEEEcCHHHHHHHH
Q 022042          153 -----KERLSQPDSQENGWLLDGYPRSL------------------SQATALKK----YGFQPDLFILLEVPEDTLVERV  205 (303)
Q Consensus       153 -----~~~l~~~~~~~~~~Vldg~p~~~------------------~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl  205 (303)
                           ...+......+..+|+|++...-                  .....+.+    ....||++|||+++++++.+|+
T Consensus        81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri  160 (219)
T cd02030          81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI  160 (219)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence                 11111122235678989853211                  01111111    1257999999999999999999


Q ss_pred             hcCC
Q 022042          206 VGRR  209 (303)
Q Consensus       206 ~~R~  209 (303)
                      .+|+
T Consensus       161 ~~R~  164 (219)
T cd02030         161 KKRG  164 (219)
T ss_pred             HHcC
Confidence            9885

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.44  E-value=3.6e-12  Score=104.59  Aligned_cols=154  Identities=22%  Similarity=0.255  Sum_probs=91.1

Q ss_pred             CCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCCCCcEEEcC-
Q 022042           93 PASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQENGWLLDG-  170 (303)
Q Consensus        93 pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~~~~~Vldg-  170 (303)
                      |||||||+++.||+.+|++++++|+++.+.      .|..+.+++.. |.....+.....+.+.+..    ...+|..| 
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~------~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~----~~~VIa~GG   70 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEER------TGMSISEIFAEEGEEAFRELESEALRELLKE----NNCVIACGG   70 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHH------HTSHHHHHHHHHHHHHHHHHHHHHHHHHHCS----SSEEEEE-T
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHH------hCCcHHHHHHcCChHHHHHHHHHHHHHHhcc----CcEEEeCCC
Confidence            799999999999999999999999998774      34555555543 2111122333444443333    24455443 


Q ss_pred             -CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHH
Q 022042          171 -YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRL  249 (303)
Q Consensus       171 -~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~  249 (303)
                       .+......+.+.+.+    .+|||+++++++.+|+..+...|                     +.   .+ ........
T Consensus        71 G~~~~~~~~~~L~~~g----~vI~L~~~~~~l~~Rl~~~~~Rp---------------------~l---~~-~~~~~~~~  121 (158)
T PF01202_consen   71 GIVLKEENRELLKENG----LVIYLDADPEELAERLRARDNRP---------------------LL---KG-KMEHEEIL  121 (158)
T ss_dssp             TGGGSHHHHHHHHHHS----EEEEEE--HHHHHHHHHHHCTSG---------------------GT---CS-HHHHHHHH
T ss_pred             CCcCcHHHHHHHHhCC----EEEEEeCCHHHHHHHHhCCCCCC---------------------CC---CC-CChHHHHH
Confidence             445556666666444    79999999999999998764211                     00   11 11111112


Q ss_pred             HHHHHHHHHHHHHhhcceEEEcCCCCH-HHHHHHHHHHHH
Q 022042          250 KTHHHNVEAVLSLYEDVTVEVNGSVNK-EDVFAQIDVALT  288 (303)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~Id~~~s~-eev~~~I~~~l~  288 (303)
                      ..+. ...++++.+.  .++++.+... ++++++|.+.|+
T Consensus       122 ~~~~-~R~~~Y~~~a--~~~v~~~~~~~~~i~~~i~~~l~  158 (158)
T PF01202_consen  122 ELLF-EREPLYEQAA--DIVVDTDGSPPEEIAEEILEFLK  158 (158)
T ss_dssp             HHHH-HHHHHHHHHS--SEEEETSSCHHHHHHHHHHHHH-
T ss_pred             HHHH-HHHHHHHhcC--eEEEeCCCCCHHHHHHHHHHHhC
Confidence            2222 3444444443  3456666655 999999988874

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.44  E-value=5.4e-12  Score=122.70  Aligned_cols=166  Identities=18%  Similarity=0.194  Sum_probs=100.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      ..|+|+|+|||||||+++.||+++|++++++|+++.+.      .|..+.+++.. |...+.+.-.+.+.+.+..    .
T Consensus         7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~------~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~----~   76 (542)
T PRK14021          7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIERE------IGMSIPSYFEEYGEPAFREVEADVVADMLED----F   76 (542)
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHH------HCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc----C
Confidence            47999999999999999999999999999999998875      35556666644 4322233333333332221    2


Q ss_pred             CcEEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCc
Q 022042          164 NGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDT  241 (303)
Q Consensus       164 ~~~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~  241 (303)
                      +.+|-.|  .+........+.+....-..+|||+++++++.+|+..+...|                     +...  +.
T Consensus        77 ~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RP---------------------ll~~--~~  133 (542)
T PRK14021         77 DGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRP---------------------MLNG--DA  133 (542)
T ss_pred             CeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCC---------------------CCCC--Cc
Confidence            3344344  333333343332211112379999999999999997543111                     1111  11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcceEEEcC-CCCHHHHHHHHHHHHHH
Q 022042          242 EEKVKLRLKTHHHNVEAVLSLYEDVTVEVNG-SVNKEDVFAQIDVALTN  289 (303)
Q Consensus       242 ~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~-~~s~eev~~~I~~~l~~  289 (303)
                      .    +++...++...+++..+.+  ++|++ ..++++++++|.+.+..
T Consensus       134 ~----~~~~~l~~~R~~~Y~~~Ad--~~i~~~~~~~~~~~~~i~~~~~~  176 (542)
T PRK14021        134 N----KRWKKLFKQRDPVFRQVAN--VHVHTRGLTPQAAAKKLIDMVAE  176 (542)
T ss_pred             H----HHHHHHHHHHHHHHHhhCC--EEEECCCCCHHHHHHHHHHHHHh
Confidence            1    2344444445555544433  34554 46999999999888864

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.44  E-value=2.6e-12  Score=105.86  Aligned_cols=157  Identities=17%  Similarity=0.164  Sum_probs=86.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcCh---HHHHHHHHHHHcCCCCCC
Q 022042           87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD---EIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~---~~~~~~l~~~l~~~~~~~  163 (303)
                      |+|.|++||||||+++.|++.++..+++.|++.......          ....+....+   +.+...+.+.+......+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   70 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIE----------KMSAGIPLNDDDRWPWLQNLNDASTAAAAKN   70 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHH----------HHHcCCCCChhhHHHHHHHHHHHHHHHHhcC
Confidence            568999999999999999999999999998874321000          0000110000   011111111221111113


Q ss_pred             CcEEEc-CCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcH
Q 022042          164 NGWLLD-GYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE  242 (303)
Q Consensus       164 ~~~Vld-g~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~  242 (303)
                      ...|++ ++. .......+...+ ....+|||++|.+++.+|+..|..+.                           ...
T Consensus        71 ~~~Vi~~t~~-~~~~r~~~~~~~-~~~~~i~l~~~~e~~~~R~~~R~~~~---------------------------~~~  121 (163)
T TIGR01313        71 KVGIITCSAL-KRHYRDILREAE-PNLHFIYLSGDKDVILERMKARKGHF---------------------------MKA  121 (163)
T ss_pred             CCEEEEeccc-HHHHHHHHHhcC-CCEEEEEEeCCHHHHHHHHHhccCCC---------------------------CCH
Confidence            333555 443 233333444333 23347999999999999999885110                           012


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh-cceEEEcCCCCHHHHHHHHHHHHH
Q 022042          243 EKVKLRLKTHHHNVEAVLSLYE-DVTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       243 e~~~~r~~~~~~~~~~~~~~~~-~~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                      +.+...+..+.   .+   .+. ..+++||++.+++++.++|.+.|.
T Consensus       122 ~~i~~~~~~~~---~~---~~~e~~~~~id~~~~~~~~~~~~~~~~~  162 (163)
T TIGR01313       122 DMLESQFAALE---EP---LADETDVLRVDIDQPLEGVEEDCIAVVL  162 (163)
T ss_pred             HHHHHHHHHhC---CC---CCCCCceEEEECCCCHHHHHHHHHHHHh
Confidence            22222222211   00   011 146889999999999999888764

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.43  E-value=1.5e-12  Score=109.82  Aligned_cols=162  Identities=12%  Similarity=0.080  Sum_probs=89.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHH----cC-CcchHHHHHHHHcCCCcChHHH-------HHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA----AG-SENGKRAKEHMEKGQLVPDEIV-------VTMV  152 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~----~~-~~~~~~i~~~~~~g~~~~~~~~-------~~~l  152 (303)
                      .+|+|+||+||||||+++.|+..++..++..+..+.....    .. ...++...+..+.+.....+..       ..-+
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~~   82 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIEI   82 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHHH
Confidence            4789999999999999999999877655444332221100    00 0111121122222211100000       0012


Q ss_pred             HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHh
Q 022042          153 KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAA  232 (303)
Q Consensus       153 ~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~  232 (303)
                      ...+..    +..+|++|.-..   ...+.+....+..+|||++|.+++.+|+..|..                      
T Consensus        83 ~~~l~~----g~~VI~~G~~~~---~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~----------------------  133 (186)
T PRK10078         83 DLWLHA----GFDVLVNGSRAH---LPQARARYQSALLPVCLQVSPEILRQRLENRGR----------------------  133 (186)
T ss_pred             HHHHhC----CCEEEEeChHHH---HHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCC----------------------
Confidence            333322    456888775111   112222222355789999999999999987731                      


Q ss_pred             hhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh-cceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          233 RLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE-DVTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       233 rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~-~~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                             ...+.+.+|++.+.        .|. ...++|+++++++++.++|.+.+..-
T Consensus       134 -------~~~~~i~~rl~r~~--------~~~~ad~~vi~~~~s~ee~~~~i~~~l~~~  177 (186)
T PRK10078        134 -------ENASEINARLARAA--------RYQPQDCHTLNNDGSLRQSVDTLLTLLHLS  177 (186)
T ss_pred             -------CCHHHHHHHHHHhh--------hhccCCEEEEeCCCCHHHHHHHHHHHHhhc
Confidence                   12345666664321        111 23467888899999999998888653

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.43  E-value=2.3e-12  Score=108.20  Aligned_cols=38  Identities=34%  Similarity=0.572  Sum_probs=36.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE  122 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~  122 (303)
                      ++|.|-||.||||||+|+.||++||+.|++.+.++|..
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~   42 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV   42 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence            79999999999999999999999999999999988865

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.42  E-value=1.7e-12  Score=104.32  Aligned_cols=114  Identities=25%  Similarity=0.360  Sum_probs=72.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcch---HHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENG---KRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~---~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      +|+++|+|||||||+++.|++.++..+|+.|++.........+..   ......       ..+.+...+...+..    
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~----   69 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEER-------AYQILNAAIRKALRN----   69 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHH-------HHHHHHHHHHHHHHT----
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHH-------HHHHHHHHHHHHHHc----
Confidence            588999999999999999999999999999988765432111100   000000       011223334444433    


Q ss_pred             CCcEEEcCCCCCHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042          163 ENGWLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRL  210 (303)
Q Consensus       163 ~~~~Vldg~p~~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~  210 (303)
                      +..+|+|...........+.+   ....+..+|+|+++.+++.+|+..|..
T Consensus        70 g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~  120 (143)
T PF13671_consen   70 GNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNR  120 (143)
T ss_dssp             T-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHC
T ss_pred             CCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCC
Confidence            567889864444444333333   233466899999999999999999863

...

>PRK07261 topology modulation protein; Provisional

Probab=99.42  E-value=6.4e-13  Score=110.50  Aligned_cols=101  Identities=22%  Similarity=0.283  Sum_probs=72.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      ++|+|+|++||||||+|+.|++.+|+++++.|.+....                .....+.+.+...+...+.+     .
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-----~   59 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP----------------NWQERDDDDMIADISNFLLK-----H   59 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc----------------ccccCCHHHHHHHHHHHHhC-----C
Confidence            47999999999999999999999999999988764210                11122334444555554433     3


Q ss_pred             cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042          165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL  210 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~  210 (303)
                      .||+||..........+.    ..|.+|||++|.++++.|+.+|..
T Consensus        60 ~wIidg~~~~~~~~~~l~----~ad~vI~Ld~p~~~~~~R~lkR~~  101 (171)
T PRK07261         60 DWIIDGNYSWCLYEERMQ----EADQIIFLNFSRFNCLYRAFKRYL  101 (171)
T ss_pred             CEEEcCcchhhhHHHHHH----HCCEEEEEcCCHHHHHHHHHHHHH
Confidence            499999655433333344    368999999999999999998853

>smart00072 GuKc Guanylate kinase homologues

Probab=99.38  E-value=2.6e-12  Score=108.09  Aligned_cols=164  Identities=18%  Similarity=0.293  Sum_probs=97.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh--CCcee--ehHHHHHHHHHcCCcc----hHHHHHHHHcCCCcChHH--------
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY--GLVHI--AAGDLLRAEIAAGSEN----GKRAKEHMEKGQLVPDEI--------  147 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l--g~~~i--~~d~l~~~~~~~~~~~----~~~i~~~~~~g~~~~~~~--------  147 (303)
                      ++.|+|.||+||||+|+++.|.+.+  ++.++  .+..-.+.....+.+.    .+.+.+.+..|..+....        
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt   81 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT   81 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence            3579999999999999999999986  23222  1111111100111111    145555556555443221        


Q ss_pred             HHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEE-cCHHHHHHHHhcCCCCCCCCceecccCCCCC
Q 022042          148 VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLE-VPEDTLVERVVGRRLDPVTGKIYHVKYSPPE  226 (303)
Q Consensus       148 ~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~-~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~  226 (303)
                      ....+.+.+..    ++.+|+|..+....++...   ...| ++|||. .+.+++.+|+.+|.                 
T Consensus        82 ~~~~i~~~~~~----~~~~ild~~~~~~~~l~~~---~~~~-~vIfi~~~s~~~l~~rl~~R~-----------------  136 (184)
T smart00072       82 SKETIRQVAEQ----GKHCLLDIDPQGVKQLRKA---QLYP-IVIFIAPPSSEELERRLRGRG-----------------  136 (184)
T ss_pred             CHHHHHHHHHc----CCeEEEEECHHHHHHHHHh---CCCc-EEEEEeCcCHHHHHHHHHhcC-----------------
Confidence            12233444433    6778999877666555432   2233 688887 55667888888764                 


Q ss_pred             chHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          227 TDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       227 ~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                                  ++..+.+++|+........    .+...-.+|.++ ++++.++++.++|.+
T Consensus       137 ------------~~~~~~i~~rl~~a~~~~~----~~~~fd~~I~n~-~l~~~~~~l~~~i~~  182 (184)
T smart00072      137 ------------TETAERIQKRLAAAQKEAQ----EYHLFDYVIVND-DLEDAYEELKEILEA  182 (184)
T ss_pred             ------------CCCHHHHHHHHHHHHHHHh----hhccCCEEEECc-CHHHHHHHHHHHHHh
Confidence                        4457778888887544432    222223456665 789998888888864

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.38  E-value=9.2e-12  Score=101.26  Aligned_cols=109  Identities=17%  Similarity=0.246  Sum_probs=66.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCCcE
Q 022042           87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW  166 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~  166 (303)
                      |+|+|++||||||+++.|++.+|+.+++.|.++......  ..    .+++...   ..+.+.......+..... ..++
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~----~~~~~~~---~~~~~~~~e~~~~~~~~~-~~~~   71 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SI----PEIFAEE---GEEGFRELEREVLLLLLT-KENA   71 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CH----HHHHHHH---CHHHHHHHHHHHHHHHhc-cCCc
Confidence            789999999999999999999999999999988765321  11    1222211   112222211111211112 2344


Q ss_pred             EEc-C--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          167 LLD-G--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       167 Vld-g--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      |++ |  +.........+.    ...++|||++|.+++.+|+.+|.
T Consensus        72 vi~~g~~~i~~~~~~~~~~----~~~~~i~l~~~~e~~~~R~~~r~  113 (154)
T cd00464          72 VIATGGGAVLREENRRLLL----ENGIVVWLDASPEELLERLARDK  113 (154)
T ss_pred             EEECCCCccCcHHHHHHHH----cCCeEEEEeCCHHHHHHHhccCC
Confidence            554 3  222222222222    24589999999999999998874

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.37  E-value=1.6e-11  Score=102.49  Aligned_cols=124  Identities=11%  Similarity=0.168  Sum_probs=70.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCc--eeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChH---HHHHHHHHHHc
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLV--HIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDE---IVVTMVKERLS  157 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~--~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~---~~~~~l~~~l~  157 (303)
                      ..+|+|+|+|||||||+++.|++.++..  +++.|++..............+  .+.. +...+..   .....+...+.
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~y~~~~~~~~   79 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGI--EFDGDGGVSPGPEFRLLEGAWYEAVA   79 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhccccccc--ccCccCCcccchHHHHHHHHHHHHHH
Confidence            3589999999999999999999998654  4567766554211100000000  0000 0001111   12233333333


Q ss_pred             CCCCCCCcEEEcC-CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          158 QPDSQENGWLLDG-YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       158 ~~~~~~~~~Vldg-~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      .....+..+|+|. ++........+......+-.+|||+||.+++.+|+.+|.
T Consensus        80 ~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~  132 (175)
T cd00227          80 AMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARG  132 (175)
T ss_pred             HHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence            3334477899996 442222223344333345679999999999999999885

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.37  E-value=1.6e-11  Score=100.23  Aligned_cols=176  Identities=21%  Similarity=0.247  Sum_probs=114.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH-----------H
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV-----------T  150 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~-----------~  150 (303)
                      .+..+|++.|..+|||||+|..|.+.+. .... ...+..+....+..|..+..++.+...+++..+.           .
T Consensus         3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~-~~~~-~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~   80 (208)
T KOG3327|consen    3 IRGALIVLEGLDRSGKSTQCGKLVESLI-PGLD-PAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS   80 (208)
T ss_pred             CCccEEeeeccccCCceeehhHHHHHHH-hccC-hHHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence            3456899999999999999999999873 2222 2334444455678888898888887777766543           2


Q ss_pred             HHHHHHcCCCCCCCcEEEcCCCC-----------CHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceec
Q 022042          151 MVKERLSQPDSQENGWLLDGYPR-----------SLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYH  219 (303)
Q Consensus       151 ~l~~~l~~~~~~~~~~Vldg~p~-----------~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~  219 (303)
                      ++.+.+.+    +..+|+|.|-.           ..+++..++..-.+||+++||+++++. ..|..+++.         
T Consensus        81 ~i~e~l~k----g~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~-~a~rggfG~---------  146 (208)
T KOG3327|consen   81 LIKEKLAK----GTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPED-AARRGGFGE---------  146 (208)
T ss_pred             HHHHHHhc----CCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHH-HHHhcCcch---------
Confidence            33444433    56689997532           233333344455789999999999998 444444431         


Q ss_pred             ccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHhh
Q 022042          220 VKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQR  294 (303)
Q Consensus       220 ~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~~  294 (303)
                                  +|.     + ...++++...+++.   +...-...+.++|++.++++|.++|..+++..+...
T Consensus       147 ------------Ery-----e-~v~fqekv~~~~q~---l~r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~~~  200 (208)
T KOG3327|consen  147 ------------ERY-----E-TVAFQEKVLVFFQK---LLRKEDLNWHVVDASKSVEKVHQQVRSLVENVLSEP  200 (208)
T ss_pred             ------------hHH-----H-HHHHHHHHHHHHHH---HHhccCCCeEEEecCccHHHHHHHHHHHHHHhccCC
Confidence                        111     1 22223333333222   222233467899999999999999999999887653

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.37  E-value=1e-11  Score=106.60  Aligned_cols=39  Identities=31%  Similarity=0.465  Sum_probs=32.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC---CceeehHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLR  120 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg---~~~i~~d~l~~  120 (303)
                      .++.+|+|.|++||||||+++.|++.++   +.+++.|+++.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~   45 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK   45 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence            5688999999999999999999999983   45677777654

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.37  E-value=1e-11  Score=109.49  Aligned_cols=109  Identities=20%  Similarity=0.303  Sum_probs=64.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---CC--ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042           86 KIMISGAPASGKGTQCELIKEKY---GL--VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l---g~--~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      +|+|+|+|||||||+|+.|++.+   |+  .+++.|. ++..+..   +.......+       .+.....+...+..  
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~-lr~~~~~---~~~~~e~~~-------~~~~~~~i~~~l~~--   67 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL-IRESFPV---WKEKYEEFI-------RDSTLYLIKTALKN--   67 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH-HHHHhHH---hhHHhHHHH-------HHHHHHHHHHHHhC--
Confidence            47899999999999999999987   33  4455543 3332211   000011111       12223344444433  


Q ss_pred             CCCCcEEEcCCCCCHHHHHH---HHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          161 SQENGWLLDGYPRSLSQATA---LKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       161 ~~~~~~Vldg~p~~~~~~~~---l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                        +..+|+|+..........   +......+.++|||++|.+++.+|...|.
T Consensus        68 --~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~  117 (249)
T TIGR03574        68 --KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERG  117 (249)
T ss_pred             --CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCC
Confidence              456888985433222222   22233357789999999999999998774

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=99.34  E-value=2.3e-11  Score=102.96  Aligned_cols=117  Identities=21%  Similarity=0.204  Sum_probs=63.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcCh--H--H---HHHHHHHHHcC
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD--E--I---VVTMVKERLSQ  158 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~--~--~---~~~~l~~~l~~  158 (303)
                      +|+|+|++||||||+++.|++++|+.++.-..-      .....+..+++++.+......  +  .   ....+.+.+..
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~------~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~   74 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVE------PDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH   74 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCcccccccc------ccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence            488999999999999999999888654422110      000011112222221100000  0  0   11111222221


Q ss_pred             CCCCCCcEEEcCCCCCHH------------------HHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          159 PDSQENGWLLDGYPRSLS------------------QATALKK----YGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       159 ~~~~~~~~Vldg~p~~~~------------------~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                       ...+..+|+|.++....                  ....+..    ....||++|||+++++++.+|+.+|.
T Consensus        75 -~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~  146 (193)
T cd01673          75 -LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRG  146 (193)
T ss_pred             -cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence             22356788998654211                  0001111    13579999999999999999999885

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.33  E-value=2e-11  Score=116.74  Aligned_cols=41  Identities=29%  Similarity=0.451  Sum_probs=38.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE  122 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~  122 (303)
                      ..+++|+|.|++||||||+|+.|+++||+.+++.|.++|..
T Consensus       282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~  322 (512)
T PRK13477        282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV  322 (512)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence            46789999999999999999999999999999999998874

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.31  E-value=1.1e-11  Score=103.35  Aligned_cols=109  Identities=17%  Similarity=0.171  Sum_probs=63.8

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHH----HHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI----VVTM  151 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~----~~~~  151 (303)
                      ..++.+|+|+|++||||||+++.|+++++     ..+++.|.+ ++.+...             +.......    ....
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~-r~~~~~~-------------~~~~~~~~~~~~~~~~   69 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL-REILGHY-------------GYDKQSRIEMALKRAK   69 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH-HhhcCCC-------------CCCHHHHHHHHHHHHH
Confidence            34678999999999999999999999885     556665544 3322110             00000110    1111


Q ss_pred             HHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhc
Q 022042          152 VKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVG  207 (303)
Q Consensus       152 l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~  207 (303)
                      +...+.   ..+..+|+|+.. .......+......+.++|||+++++++.+|+.+
T Consensus        70 l~~~l~---~~g~~VI~~~~~-~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~  121 (176)
T PRK05541         70 LAKFLA---DQGMIVIVTTIS-MFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQK  121 (176)
T ss_pred             HHHHHH---hCCCEEEEEeCC-cHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchh
Confidence            222222   224568888753 2222222222223456899999999999999753

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.31  E-value=9.5e-12  Score=106.58  Aligned_cols=166  Identities=22%  Similarity=0.280  Sum_probs=91.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCce-eehHHHHHHHHHcCCc--------chHHHHHHHHcCCCcChHH----H
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVH-IAAGDLLRAEIAAGSE--------NGKRAKEHMEKGQLVPDEI----V  148 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~-i~~d~l~~~~~~~~~~--------~~~~i~~~~~~g~~~~~~~----~  148 (303)
                      ..+++|+|+||+||||||+++.|.+. +..+ +......+. ...+..        -...+...+..+..+....    .
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~-~~~~~~~~~~ttr~-~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~   88 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER-KLPFHFVVTATTRP-KRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY   88 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc-CCcccccccccCCC-CCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence            35678999999999999999999764 2211 100000000 000000        0112222333333221100    0


Q ss_pred             ----HHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcC--HHHHHHHHhcCCCCCCCCceecccC
Q 022042          149 ----VTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVP--EDTLVERVVGRRLDPVTGKIYHVKY  222 (303)
Q Consensus       149 ----~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~--~e~~~~Rl~~R~~~~~~g~~~~~~~  222 (303)
                          ...+...+..    +..+|+|.-.   .-+..+.+.  .||.++++.+|  .+++.+|+.+|.             
T Consensus        89 YGt~~~~i~~~~~~----g~~vi~~~~~---~g~~~l~~~--~pd~~~if~~pps~e~l~~Rl~~R~-------------  146 (206)
T PRK14738         89 YGVPKAPVRQALAS----GRDVIVKVDV---QGAASIKRL--VPEAVFIFLAPPSMDELTRRLELRR-------------  146 (206)
T ss_pred             ecCCHHHHHHHHHc----CCcEEEEcCH---HHHHHHHHh--CCCeEEEEEeCCCHHHHHHHHHHcC-------------
Confidence                1122323322    5557776532   233334433  37887777765  557899998874             


Q ss_pred             CCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          223 SPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       223 ~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                                      ++..+.+.+|+..++.....   .+...++.||++.++++++++|.+.|...
T Consensus       147 ----------------~~~~~~~~~Rl~~~~~e~~~---~~~~~~~iId~~~~~e~v~~~i~~~l~~~  195 (206)
T PRK14738        147 ----------------TESPEELERRLATAPLELEQ---LPEFDYVVVNPEDRLDEAVAQIMAIISAE  195 (206)
T ss_pred             ----------------CCCHHHHHHHHHHHHHHHhc---ccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence                            23356777788776554332   12224678999999999999999999765

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.31  E-value=8.7e-11  Score=112.66  Aligned_cols=109  Identities=22%  Similarity=0.316  Sum_probs=67.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      |.|+|+|++||||||+++.|++++|+.++++|+++.+.      .|..+.+++.. |.....+...+.+.+....    .
T Consensus         1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~------~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~----~   70 (488)
T PRK13951          1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR------EGRSVRRIFEEDGEEYFRLKEKELLRELVER----D   70 (488)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH------cCCCHHHHHHHhhhHHHHHHHHHHHHHHhhc----C
Confidence            47999999999999999999999999999999998763      33333443332 2211122222222222111    1


Q ss_pred             CcEEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042          164 NGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR  208 (303)
Q Consensus       164 ~~~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R  208 (303)
                      ..+|-.|  ..........+.+     +.+|||+++.+++.+|+..+
T Consensus        71 ~~Vis~Gggvv~~~~~r~~l~~-----~~vI~L~as~e~l~~Rl~~~  112 (488)
T PRK13951         71 NVVVATGGGVVIDPENRELLKK-----EKTLFLYAPPEVLMERVTTE  112 (488)
T ss_pred             CEEEECCCccccChHHHHHHhc-----CeEEEEECCHHHHHHHhccC
Confidence            2233233  2223334444442     46999999999999999754

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.30  E-value=1.3e-11  Score=103.86  Aligned_cols=163  Identities=18%  Similarity=0.282  Sum_probs=86.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcc--------hHHHHHHHHcCCCcChHH------
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSEN--------GKRAKEHMEKGQLVPDEI------  147 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~--------~~~i~~~~~~g~~~~~~~------  147 (303)
                      .++++|+|+||+|||||||++.|.+++.-.+++....-|.. ..+...        .+.+.+.+..+..+....      
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~-r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~Y   80 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP-RPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYY   80 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC-CCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeee
Confidence            35789999999999999999999988732233332222211 111111        122333333333221100      


Q ss_pred             --HHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCc--EEEEEEcC-HHHHHHHHhcCCCCCCCCceecccC
Q 022042          148 --VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPD--LFILLEVP-EDTLVERVVGRRLDPVTGKIYHVKY  222 (303)
Q Consensus       148 --~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd--~vI~L~~~-~e~~~~Rl~~R~~~~~~g~~~~~~~  222 (303)
                        -..-+...+.    .++.+|+|--+....+   +...  .|+  ++|||..| .+++.+|+.+|+             
T Consensus        81 Gt~~~~i~~~~~----~g~~~i~d~~~~g~~~---l~~~--~~~~~~~Ifi~pps~e~l~~RL~~R~-------------  138 (186)
T PRK14737         81 GTPKAFIEDAFK----EGRSAIMDIDVQGAKI---IKEK--FPERIVTIFIEPPSEEEWEERLIHRG-------------  138 (186)
T ss_pred             cCcHHHHHHHHH----cCCeEEEEcCHHHHHH---HHHh--CCCCeEEEEEECCCHHHHHHHHHhcC-------------
Confidence              1111222222    2455666643322222   2222  233  46666664 566677776664             


Q ss_pred             CCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHH
Q 022042          223 SPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       223 ~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                                      .+.++.+++|++....+... ...   .-++|+++ ++++..+++..+|.
T Consensus       139 ----------------~~s~e~i~~Rl~~~~~e~~~-~~~---~D~vI~N~-dle~a~~ql~~ii~  183 (186)
T PRK14737        139 ----------------TDSEESIEKRIENGIIELDE-ANE---FDYKIIND-DLEDAIADLEAIIC  183 (186)
T ss_pred             ----------------CCCHHHHHHHHHHHHHHHhh-hcc---CCEEEECc-CHHHHHHHHHHHHh
Confidence                            44577888888876543321 112   23566777 89999888887764

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.28  E-value=2.5e-11  Score=97.83  Aligned_cols=103  Identities=23%  Similarity=0.302  Sum_probs=63.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCCc
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG  165 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~  165 (303)
                      +|+|+|++||||||+|+.|++++|+++++.+.+..+....      ... ...... ..++.+...+.+ +.    ....
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~------~~~-~~~~~~-~i~~~l~~~~~~-~~----~~~~   67 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGK------LAS-EVAAIP-EVRKALDERQRE-LA----KKPG   67 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHH------HHH-HhcccH-hHHHHHHHHHHH-Hh----hCCC
Confidence            4889999999999999999999999999998443322110      000 000000 001112222222 21    1456


Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042          166 WLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR  208 (303)
Q Consensus       166 ~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R  208 (303)
                      ||+||......    +   ....+++|||++|++++.+|+.+|
T Consensus        68 ~Vidg~~~~~~----~---~~~~~~~i~l~~~~~~r~~R~~~r  103 (147)
T cd02020          68 IVLEGRDIGTV----V---FPDADLKIFLTASPEVRAKRRAKQ  103 (147)
T ss_pred             EEEEeeeeeeE----E---cCCCCEEEEEECCHHHHHHHHHHH
Confidence            99998532110    1   124689999999999999999885

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.28  E-value=6.9e-11  Score=98.67  Aligned_cols=163  Identities=17%  Similarity=0.187  Sum_probs=95.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChH-------HHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE-------IVVTMVKERL  156 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~~l~~~l  156 (303)
                      +.+++|+|++||||||+++.|+..++..+++.+++....         .++ .+..|....++       .+.......+
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~---------~~r-~~~~g~~~~~~~~~~~~~~~~~~~~~~~   72 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAK---------NID-KMSQGIPLTDEDRLPWLERLNDASYSLY   72 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHh---------HHH-HHhcCCCCCcccchHHHHHHHHHHHHHH
Confidence            347899999999999999999999998888877653211         011 11122211111       1111222111


Q ss_pred             cCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhcc
Q 022042          157 SQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTK  236 (303)
Q Consensus       157 ~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~  236 (303)
                      ..   ...|+|+..+-. ......+.+.+ .+..+|||+++.+++.+|+.+|..|..                       
T Consensus        73 ~~---~~~g~iv~s~~~-~~~R~~~r~~~-~~~~~v~l~a~~~~l~~Rl~~R~~~~~-----------------------  124 (176)
T PRK09825         73 KK---NETGFIVCSSLK-KQYRDILRKSS-PNVHFLWLDGDYETILARMQRRAGHFM-----------------------  124 (176)
T ss_pred             hc---CCCEEEEEEecC-HHHHHHHHhhC-CCEEEEEEeCCHHHHHHHHhcccCCCC-----------------------
Confidence            11   146777766532 22233333333 466899999999999999999963211                       


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042          237 RFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQ  293 (303)
Q Consensus       237 r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~  293 (303)
                          ..+.+...+..+    ++. ..-+..++.||++.+++++.+++...+..++..
T Consensus       125 ----~~~vl~~Q~~~~----e~~-~~~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  172 (176)
T PRK09825        125 ----PPDLLQSQFDAL----ERP-CADEHDIARIDVNHDIENVTEQCRQAVQAFRQA  172 (176)
T ss_pred             ----CHHHHHHHHHHc----CCC-CCCcCCeEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence                122222111111    100 000113789999999999999999988877654

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=99.28  E-value=5.6e-10  Score=89.98  Aligned_cols=167  Identities=19%  Similarity=0.235  Sum_probs=97.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHHHHHHHcC--CcchHHHHHHHHcCCCcChHHHHHHH---HHHHc
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAG--SENGKRAKEHMEKGQLVPDEIVVTMV---KERLS  157 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~~~~~~~~--~~~~~~i~~~~~~g~~~~~~~~~~~l---~~~l~  157 (303)
                      +++++|+|.||+||||+++.+.+.+ .+.+++.++++.+.....  -+..+.++       .+|.+....+.   ..++.
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~R-------klp~e~Q~~lq~~Aa~rI~   76 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMR-------KLPLENQRELQAEAAKRIA   76 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHh-------cCCHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999998 888899999987754321  11222221       12333322222   22222


Q ss_pred             CCCCCCCcEEEcC----------CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCc
Q 022042          158 QPDSQENGWLLDG----------YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPET  227 (303)
Q Consensus       158 ~~~~~~~~~Vldg----------~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~  227 (303)
                      +..   .-+|+|.          +|-...+.  +.  ...||.++.|.++++.++.|..+..   .              
T Consensus        77 ~~~---~~iivDtH~~IkTP~GylpgLP~~V--l~--~l~pd~ivllEaDp~~Il~RR~~D~---~--------------  132 (189)
T COG2019          77 EMA---LEIIVDTHATIKTPAGYLPGLPSWV--LE--ELNPDVIVLLEADPEEILERRLRDS---R--------------  132 (189)
T ss_pred             Hhh---hceEEeccceecCCCccCCCCcHHH--HH--hcCCCEEEEEeCCHHHHHHHHhccc---c--------------
Confidence            221   2267774          12222222  22  2359999999999999887765431   0              


Q ss_pred             hHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcC-CCCHHHHHHHHHHHHH
Q 022042          228 DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNG-SVNKEDVFAQIDVALT  288 (303)
Q Consensus       228 ~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~-~~s~eev~~~I~~~l~  288 (303)
                             ..|..+..|.+..+.+..+--.-...-.++..+.+|.+ ++.+++-..+|...|+
T Consensus       133 -------r~Rd~es~e~i~eHqe~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~  187 (189)
T COG2019         133 -------RDRDVESVEEIREHQEMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELLD  187 (189)
T ss_pred             -------cccccccHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence                   12334456666555443332222222333444555544 5788888888888775

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.27  E-value=2.6e-10  Score=95.35  Aligned_cols=161  Identities=15%  Similarity=0.163  Sum_probs=84.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCc---eeehHHHHHHHHHcCCcc----hHHHHHHHHcCCCcC--------hHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLV---HIAAGDLLRAEIAAGSEN----GKRAKEHMEKGQLVP--------DEIVV  149 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~---~i~~d~l~~~~~~~~~~~----~~~i~~~~~~g~~~~--------~~~~~  149 (303)
                      .+|+|+|++||||||+++.|+..++..   .+....+.+.....+...    ...+......+....        .... 
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-   80 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP-   80 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh-
Confidence            378999999999999999999987532   110000000000000000    011111111221100        0001 


Q ss_pred             HHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchH
Q 022042          150 TMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDE  229 (303)
Q Consensus       150 ~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~  229 (303)
                      ..+...+.    .+..+|+|+...   ....+.+.. ....+|||+++.+++.+|+..|..                   
T Consensus        81 ~~i~~~~~----~g~~vv~~g~~~---~~~~~~~~~-~~~~~i~l~~~~~~~~~Rl~~R~~-------------------  133 (179)
T TIGR02322        81 AEIDQWLE----AGDVVVVNGSRA---VLPEARQRY-PNLLVVNITASPDVLAQRLAARGR-------------------  133 (179)
T ss_pred             HHHHHHHh----cCCEEEEECCHH---HHHHHHHHC-CCcEEEEEECCHHHHHHHHHHcCC-------------------
Confidence            11222222    256688888532   122232222 234799999999999999998741                   


Q ss_pred             HHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHH
Q 022042          230 IAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       230 i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                                ...+.+.+|+..+.....     ....+++|+++.+++++.++|.+.+.
T Consensus       134 ----------~~~~~~~~rl~~~~~~~~-----~~~~~~vi~~~~~~ee~~~~i~~~l~  177 (179)
T TIGR02322       134 ----------ESREEIEERLARSARFAA-----APADVTTIDNSGSLEVAGETLLRLLR  177 (179)
T ss_pred             ----------CCHHHHHHHHHHHhhccc-----ccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence                      113455555543221110     11234557888999999999998875

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.27  E-value=5e-11  Score=96.74  Aligned_cols=114  Identities=22%  Similarity=0.246  Sum_probs=69.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcC---hHHHHHHHHHHHc-CCCC
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP---DEIVVTMVKERLS-QPDS  161 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~---~~~~~~~l~~~l~-~~~~  161 (303)
                      +|+|+|+|||||||+|+.|++.++..+++.|.+.......          .+..+....   .+.+...+..... ....
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   70 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIA----------KMAAGIPLNDEDRWPWLQALTDALLAKLAS   70 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHH----------HHHcCCCCCccchhhHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999998876532100          011111111   0111111111111 1111


Q ss_pred             CCCcEEEcCCCCCHHHHHHHHHhC-CCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          162 QENGWLLDGYPRSLSQATALKKYG-FQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       162 ~~~~~Vldg~p~~~~~~~~l~~~~-~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      .+..+|+|...........+.... ..+..+|||+++.+++.+|+.+|.
T Consensus        71 ~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~  119 (150)
T cd02021          71 AGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARK  119 (150)
T ss_pred             CCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcc
Confidence            256788886323334444444431 235579999999999999999985

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK00023 cmk cytidylate kinase; Provisional

Probab=99.25  E-value=3.8e-10  Score=97.91  Aligned_cols=40  Identities=33%  Similarity=0.591  Sum_probs=36.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE  122 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~  122 (303)
                      .+++|+|.|++||||||+++.|+++||+.+++.+.+++..
T Consensus         3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~   42 (225)
T PRK00023          3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAV   42 (225)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHH
Confidence            3579999999999999999999999999999999987763

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=99.25  E-value=1e-10  Score=99.23  Aligned_cols=122  Identities=19%  Similarity=0.215  Sum_probs=68.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc---eeehHHHHHHHHHc------C----Cc-------chHHHHHHHHcCC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLV---HIAAGDLLRAEIAA------G----SE-------NGKRAKEHMEKGQ  141 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~---~i~~d~l~~~~~~~------~----~~-------~~~~i~~~~~~g~  141 (303)
                      .+..+|+|.|++||||||+|+.|.+.|+..   .|+.|+++...-..      .    .+       +.+.+. .+..|.
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~-~L~~g~   84 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLK-DLKQGK   84 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHH-HHHcCC
Confidence            345799999999999999999999999854   67777776532110      0    00       001111 122233


Q ss_pred             CcChHHHHHHHHHHHcC--CCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          142 LVPDEIVVTMVKERLSQ--PDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       142 ~~~~~~~~~~l~~~l~~--~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      .+..-.+.-....+..+  .......+|++|+-...+  +.+.+   ..|+.||++++.++++.|...|.
T Consensus        85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~---~~d~kIfvdtd~D~RliRri~RD  149 (218)
T COG0572          85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRD---LMDLKIFVDTDADVRLIRRIKRD  149 (218)
T ss_pred             cccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHh---hcCEEEEEeCCccHHHHHHHHHH
Confidence            22211111111111100  111246688899522111  11222   36899999999999999988875

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.23  E-value=1.2e-10  Score=96.87  Aligned_cols=114  Identities=20%  Similarity=0.124  Sum_probs=63.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHH-HHHHHHHcC--CcchHHHHHHHHcCCCcChHHHHHHHHHHHc
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY---GLVHIAAGD-LLRAEIAAG--SENGKRAKEHMEKGQLVPDEIVVTMVKERLS  157 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~-l~~~~~~~~--~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~  157 (303)
                      |+.|+++|+|||||||+|+.|++.+   +...++... ..+-.+...  ....+..++.+       .+-....+..+++
T Consensus         1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~-------~ks~~rlldSalk   73 (261)
T COG4088           1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESF-------LKSVERLLDSALK   73 (261)
T ss_pred             CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHH-------HHHHHHHHHHHhc
Confidence            4689999999999999999999988   333333322 111111100  00111111111       1122234444443


Q ss_pred             CCCCCCCcEEEcCCC---CCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          158 QPDSQENGWLLDGYP---RSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       158 ~~~~~~~~~Vldg~p---~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                           +.-+|+|...   .-..|..........+.++||+.+|.++|++|-..|.
T Consensus        74 -----n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erg  123 (261)
T COG4088          74 -----NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERG  123 (261)
T ss_pred             -----ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCC
Confidence                 2345666521   1122332233334467899999999999999986664

>TIGR00017 cmk cytidylate kinase

Probab=99.23  E-value=3.7e-10  Score=97.33  Aligned_cols=38  Identities=32%  Similarity=0.529  Sum_probs=35.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE  122 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~  122 (303)
                      ++|.|.|++||||||+++.|+++||+.+++.+++++..
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~   40 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI   40 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence            68999999999999999999999999999999887654

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.22  E-value=3.5e-10  Score=93.20  Aligned_cols=180  Identities=17%  Similarity=0.233  Sum_probs=100.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      ++++|+|+||+|+||||+++.|-+..+ ..+|+....|.- +++...|       .+...+..+.+..++.    +...-
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~p-R~gEv~G-------~dY~Fvs~~EF~~~i~----~~~fL   69 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRKP-RPGEVDG-------VDYFFVTEEEFEELIE----RDEFL   69 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCCC-CCCCcCC-------ceeEeCCHHHHHHHHh----cCCcE
Confidence            578999999999999999999999884 445554444431 2222222       0112223333333322    11000


Q ss_pred             CCcEEEcC-CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCc
Q 022042          163 ENGWLLDG-YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDT  241 (303)
Q Consensus       163 ~~~~Vldg-~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~  241 (303)
                      ...-+..+ |......++.....|    ..++|+++.+-.++ +.+..     ...+.+...||+.+++..||..|..|.
T Consensus        70 E~a~~~gnyYGT~~~~ve~~~~~G----~~vildId~qGa~q-vk~~~-----p~~v~IFi~pPs~eeL~~RL~~Rgtds  139 (191)
T COG0194          70 EWAEYHGNYYGTSREPVEQALAEG----KDVILDIDVQGALQ-VKKKM-----PNAVSIFILPPSLEELERRLKGRGTDS  139 (191)
T ss_pred             EEEEEcCCcccCcHHHHHHHHhcC----CeEEEEEehHHHHH-HHHhC-----CCeEEEEEcCCCHHHHHHHHHccCCCC
Confidence            11112222 222333333333333    23444444432221 11111     134566677888888888888888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          242 EEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       242 ~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                      ++.+.+|+...+.+...... |+   ++|. |.+++..++++..++...
T Consensus       140 ~e~I~~Rl~~a~~Ei~~~~~-fd---yviv-Ndd~e~a~~~l~~ii~ae  183 (191)
T COG0194         140 EEVIARRLENAKKEISHADE-FD---YVIV-NDDLEKALEELKSIILAE  183 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CC---EEEE-CccHHHHHHHHHHHHHHH
Confidence            99999999998887665443 32   2232 357888888888887654

>PRK06547 hypothetical protein; Provisional

Probab=99.22  E-value=4.9e-11  Score=99.11  Aligned_cols=124  Identities=16%  Similarity=0.176  Sum_probs=70.5

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHH-HHHcCCCcChHHHHHHHHHHHcC-
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKE-HMEKGQLVPDEIVVTMVKERLSQ-  158 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~-~~~~g~~~~~~~~~~~l~~~l~~-  158 (303)
                      ...+++|+|.|++||||||+++.|++.+++.++++|+++...- .-......+.+ ++..|....-.  .......... 
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~-~~~~~~~~l~~~~l~~g~~~~~~--yd~~~~~~~~~   88 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWH-GLAAASEHVAEAVLDEGRPGRWR--WDWANNRPGDW   88 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccc-cCChHHHHHHHHHHhCCCCceec--CCCCCCCCCCc
Confidence            3557899999999999999999999999999999998874310 00111111222 22222211000  0000000000 


Q ss_pred             -CCCCCCcEEEcCCCCCHHHH-HHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          159 -PDSQENGWLLDGYPRSLSQA-TALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       159 -~~~~~~~~Vldg~p~~~~~~-~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                       .......+|++|......+. ..+.+.  ..-++|||++|.+++++|+.+|.
T Consensus        89 ~~l~~~~vVIvEG~~al~~~~r~~~d~~--g~v~~I~ld~~~~vr~~R~~~Rd  139 (172)
T PRK06547         89 VSVEPGRRLIIEGVGSLTAANVALASLL--GEVLTVWLDGPEALRKERALARD  139 (172)
T ss_pred             EEeCCCCeEEEEehhhccHHHHHHhccC--CCEEEEEEECCHHHHHHHHHhcC
Confidence             01123568889842222222 122211  12389999999999999999985

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.22  E-value=1e-09  Score=93.78  Aligned_cols=167  Identities=20%  Similarity=0.272  Sum_probs=87.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCC----c----chHHHHHHHHcCCCcC-----hHH-
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGS----E----NGKRAKEHMEKGQLVP-----DEI-  147 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~----~----~~~~i~~~~~~g~~~~-----~~~-  147 (303)
                      +.+.+|+|.|++||||||+++.|++.++..++......++. ..+.    +    ....+.+....+..+.     +.. 
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p-~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   81 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP-RPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYY   81 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC-CCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccc
Confidence            34578999999999999999999998753222222111110 0000    0    0122222222222110     000 


Q ss_pred             --HHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCC
Q 022042          148 --VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPP  225 (303)
Q Consensus       148 --~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p  225 (303)
                        ....+...+..    +..+|+|.-+..   ...+.+....+-.++++.++.+++.+|+..|.                
T Consensus        82 ~~~~~~i~~~l~~----g~~vi~dl~~~g---~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~----------------  138 (205)
T PRK00300         82 GTPRSPVEEALAA----GKDVLLEIDWQG---ARQVKKKMPDAVSIFILPPSLEELERRLRGRG----------------  138 (205)
T ss_pred             cCcHHHHHHHHHc----CCeEEEeCCHHH---HHHHHHhCCCcEEEEEECcCHHHHHHHHHhcC----------------
Confidence              01122222222    444566643222   22233222222223334566777788877764                


Q ss_pred             CchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          226 ETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       226 ~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                                   .+.++.+++|+..+....... ..|+   ++|.+ .+++++.+++..++...
T Consensus       139 -------------~~~~~~i~~rl~~~~~~~~~~-~~~d---~vi~n-~~~e~~~~~l~~il~~~  185 (205)
T PRK00300        139 -------------TDSEEVIARRLAKAREEIAHA-SEYD---YVIVN-DDLDTALEELKAIIRAE  185 (205)
T ss_pred             -------------CCCHHHHHHHHHHHHHHHHhH-HhCC---EEEEC-CCHHHHHHHHHHHHHHH
Confidence                         355778888888877655432 2332   22333 48999999999999876

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.21  E-value=4.9e-12  Score=98.72  Aligned_cols=108  Identities=24%  Similarity=0.413  Sum_probs=60.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHc--CCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA--GSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~--~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      +|+|+|+|||||||+|+.|+++||++++++|+++......  ..........        ..+.+...+.....  ....
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~--~~~~   70 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDA--------DIDLLDDILEQLQN--KPDN   70 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHH--------HHHHHHHHHHHHHE--TTT-
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHH--------HHHHHHHHHHhhhc--cCCC
Confidence            5899999999999999999999999999999954211100  0000000000        01112222222222  2225


Q ss_pred             CcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042          164 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR  208 (303)
Q Consensus       164 ~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R  208 (303)
                      ..||+||.-. ......+.    ..+.+||++++.+++.+|+.+|
T Consensus        71 ~~~ii~g~~~-~~~~~~~~----~~~~~i~l~~~~~~~~~~~~~R  110 (121)
T PF13207_consen   71 DNWIIDGSYE-SEMEIRLP----EFDHVIYLDAPDEECRERRLKR  110 (121)
T ss_dssp             -EEEEECCSC-HCCHSCCH----HGGCEEEEEEEEHHHHHHHHHH
T ss_pred             CeEEEeCCCc-cchhhhhh----cCCEEEEEECCCHHHHHHHHHH
Confidence            6799999311 10000011    2467999999998665555554

...

>TIGR00235 udk uridine kinase

Probab=99.21  E-value=2.9e-10  Score=97.48  Aligned_cols=39  Identities=31%  Similarity=0.403  Sum_probs=32.2

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CceeehHHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLL  119 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg---~~~i~~d~l~  119 (303)
                      .+++.+|+|.|++||||||+++.|+..++   ..+++.|+.+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~   44 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY   44 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence            45668999999999999999999999875   4567777654

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.20  E-value=5.9e-11  Score=119.25  Aligned_cols=38  Identities=21%  Similarity=0.410  Sum_probs=35.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE  122 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~  122 (303)
                      ++|+|.|||||||||+|+.|+++||+.+++.+.+++..
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~   39 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC   39 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence            48999999999999999999999999999999888764

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.20  E-value=1.6e-10  Score=95.30  Aligned_cols=156  Identities=13%  Similarity=0.091  Sum_probs=84.4

Q ss_pred             EcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChH---HHHHHHHHHHcCC-CCCCCc
Q 022042           90 SGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE---IVVTMVKERLSQP-DSQENG  165 (303)
Q Consensus        90 ~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~---~~~~~l~~~l~~~-~~~~~~  165 (303)
                      +|++||||||+++.|++.+|..+++.|.+.......          ....|....+.   .+...+.+..... ...+..
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIE----------KMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVS   70 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhc----------cccCCCCCChhhHHHHHHHHHHHHHHHHHcCCce
Confidence            599999999999999999999999887653211000          00111111110   1111111111110 111334


Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHH
Q 022042          166 WLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKV  245 (303)
Q Consensus       166 ~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~  245 (303)
                      +|+..+. .......+.+ ...+..+|||++|.+++.+|+.+|..+.                           ...+.+
T Consensus        71 viv~s~~-~~~~r~~~~~-~~~~~~~v~l~a~~~~l~~Rl~~R~~~~---------------------------a~~~vl  121 (163)
T PRK11545         71 LIVCSAL-KKHYRDLLRE-GNPNLSFIYLKGDFDVIESRLKARKGHF---------------------------FKTQML  121 (163)
T ss_pred             EEEEecc-hHHHHHHHHc-cCCCEEEEEEECCHHHHHHHHHhccCCC---------------------------CCHHHH
Confidence            5554442 2222333333 3346689999999999999999996221                           012222


Q ss_pred             HHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          246 KLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       246 ~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                      ...+.    .+++.... +..++.||+..+++++.+.+...+.+
T Consensus       122 ~~Q~~----~~ep~~~~-e~~~~~id~~~~~~~~~~~~~~~~~~  160 (163)
T PRK11545        122 VTQFE----TLQEPGAD-ETDVLVVDIDQPLEGVVASTIEVIKK  160 (163)
T ss_pred             HHHHH----HcCCCCCC-CCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            21111    11111000 01367899999999999999888855

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=99.19  E-value=9.6e-10  Score=95.21  Aligned_cols=128  Identities=19%  Similarity=0.260  Sum_probs=74.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceee---hHHHHHHHHHc-------CCcch---HHHHHHHHcC-CCcCh---
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA---AGDLLRAEIAA-------GSENG---KRAKEHMEKG-QLVPD---  145 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~---~d~l~~~~~~~-------~~~~~---~~i~~~~~~g-~~~~~---  145 (303)
                      ..++|++.|+.|||||++|+.||+++|+.++.   +|+++-...-.       .-+..   -.++.+..+- ..+..   
T Consensus        70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q  149 (393)
T KOG3877|consen   70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQ  149 (393)
T ss_pred             cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHH
Confidence            45799999999999999999999999987764   44332211000       00000   0122121111 00000   


Q ss_pred             -HHH---HHHHHHHHcCCCCCCCcEEEcCCCC-CHHHHHHHHH---------------------hCCCCcEEEEEEcCHH
Q 022042          146 -EIV---VTMVKERLSQPDSQENGWLLDGYPR-SLSQATALKK---------------------YGFQPDLFILLEVPED  199 (303)
Q Consensus       146 -~~~---~~~l~~~l~~~~~~~~~~Vldg~p~-~~~~~~~l~~---------------------~~~~pd~vI~L~~~~e  199 (303)
                       .++   .....+++......++|+|++.-|. ....++.+..                     ....|.+|||||+|..
T Consensus       150 ~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv~  229 (393)
T KOG3877|consen  150 DRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPVN  229 (393)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCcH
Confidence             011   1112344445555689999997553 2222332222                     1257999999999999


Q ss_pred             HHHHHHhcCCC
Q 022042          200 TLVERVVGRRL  210 (303)
Q Consensus       200 ~~~~Rl~~R~~  210 (303)
                      .+++++++|+.
T Consensus       230 ~v~~~Ik~rg~  240 (393)
T KOG3877|consen  230 KVLENIKRRGN  240 (393)
T ss_pred             HHHHHHHhcCC
Confidence            99999999964

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.19  E-value=1.9e-10  Score=96.11  Aligned_cols=162  Identities=19%  Similarity=0.212  Sum_probs=86.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcc--------hHHHHHHHHcCCCcCh-----H---HH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSEN--------GKRAKEHMEKGQLVPD-----E---IV  148 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~--------~~~i~~~~~~g~~~~~-----~---~~  148 (303)
                      .+|+|.|++||||||+++.|++.++..++......++.. .+...        ...+.+.+..+..+..     .   ..
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~   80 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPR-PGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP   80 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCC-CCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence            479999999999999999999977544443322222110 01000        1122222333322211     0   01


Q ss_pred             HHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCch
Q 022042          149 VTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETD  228 (303)
Q Consensus       149 ~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~  228 (303)
                      ...+...+.+    +..+|+|.-   ......+.+....+..++++..+.+.+.+|+..|.                   
T Consensus        81 ~~~i~~~~~~----g~~vi~d~~---~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~-------------------  134 (180)
T TIGR03263        81 KSPVEEALAA----GKDVLLEID---VQGARQVKKKFPDAVSIFILPPSLEELERRLRKRG-------------------  134 (180)
T ss_pred             HHHHHHHHHC----CCeEEEECC---HHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC-------------------
Confidence            1223333332    556777742   22223333333233345555667788888887764                   


Q ss_pred             HHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHH
Q 022042          229 EIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       229 ~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                                ++.++.+++|+..+..+.+. ...   .-++|.++ ++++..+++.+.+.
T Consensus       135 ----------~~~~~~i~~rl~~~~~~~~~-~~~---~d~~i~n~-~~~~~~~~l~~~~~  179 (180)
T TIGR03263       135 ----------TDSEEVIERRLAKAKKEIAH-ADE---FDYVIVND-DLEKAVEELKSIIL  179 (180)
T ss_pred             ----------CCCHHHHHHHHHHHHHHHhc-ccc---CcEEEECC-CHHHHHHHHHHHHh
Confidence                      34466788888776544321 111   23445554 78999988887764

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK12338 hypothetical protein; Provisional

Probab=99.19  E-value=1.5e-09  Score=97.93  Aligned_cols=44  Identities=23%  Similarity=0.407  Sum_probs=39.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHc
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA  125 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~  125 (303)
                      ++|.+|+|.|+|||||||+|+.|++++|+.++..++.+++.+..
T Consensus         2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~   45 (319)
T PRK12338          2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG   45 (319)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence            45789999999999999999999999999999788888886654

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=99.17  E-value=5.5e-10  Score=111.39  Aligned_cols=39  Identities=36%  Similarity=0.468  Sum_probs=36.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE  122 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~  122 (303)
                      .++|.|.||+||||||+++.|+++||+.+++.+.+++..
T Consensus       442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~  480 (661)
T PRK11860        442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT  480 (661)
T ss_pred             cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence            468999999999999999999999999999999999876

>PRK06696 uridine kinase; Validated

Probab=99.15  E-value=3e-10  Score=98.55  Aligned_cols=42  Identities=29%  Similarity=0.431  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCc--eeehHHHHHH
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKY---GLV--HIAAGDLLRA  121 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l---g~~--~i~~d~l~~~  121 (303)
                      ....+++|+|.|++||||||+|+.|++.+   |..  ++++|+++..
T Consensus        18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~   64 (223)
T PRK06696         18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP   64 (223)
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence            34568899999999999999999999999   544  4557877643

>PTZ00301 uridine kinase; Provisional

Probab=99.14  E-value=2.9e-10  Score=97.41  Aligned_cols=37  Identities=32%  Similarity=0.293  Sum_probs=29.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh----C---CceeehHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY----G---LVHIAAGDLLR  120 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l----g---~~~i~~d~l~~  120 (303)
                      -++|+|.|++||||||+|+.|++++    |   ...++.|++.+
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~   46 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR   46 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence            3689999999999999999998876    2   23566776654

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.12  E-value=9.3e-10  Score=93.57  Aligned_cols=35  Identities=34%  Similarity=0.399  Sum_probs=29.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLR  120 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~~  120 (303)
                      +|+|+|++||||||+++.|+..+   +..+++.|++..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~   38 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK   38 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence            47899999999999999999987   367788887653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK07667 uridine kinase; Provisional

Probab=99.08  E-value=2e-09  Score=91.20  Aligned_cols=45  Identities=20%  Similarity=0.178  Sum_probs=35.9

Q ss_pred             cccCCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHHH
Q 022042           79 SATVEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEI  123 (303)
Q Consensus        79 ~~~~~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~~~~  123 (303)
                      ..+....+|+|.|++||||||+|+.|++.++     ...++.|+++....
T Consensus        12 ~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~   61 (193)
T PRK07667         12 KHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERN   61 (193)
T ss_pred             hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhh
Confidence            3344557999999999999999999999873     45888998776543

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=99.07  E-value=1e-08  Score=91.61  Aligned_cols=43  Identities=26%  Similarity=0.436  Sum_probs=34.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA  124 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~  124 (303)
                      +.|++|+|.|++||||||+|..|+++||+..+-..|.+++.+.
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R  132 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMR  132 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHH
Confidence            5689999999999999999999999999974433555554444

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.05  E-value=1.1e-08  Score=87.13  Aligned_cols=108  Identities=11%  Similarity=0.107  Sum_probs=59.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcCh--HHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD--EIVVTMVKE  154 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l-----g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~--~~~~~~l~~  154 (303)
                      .++.+|+|+|.+||||||+++.|+..+     +..+++.|++..... ..  .          + ..+.  ......+..
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~-~~--~----------~-~~~~~~~~~~~~l~~   87 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLC-SD--L----------G-FSDADRKENIRRVGE   87 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhh-hc--C----------C-cCcccHHHHHHHHHH
Confidence            467799999999999999999999986     245565555442211 10  0          0 0010  111111111


Q ss_pred             HHcCCCCCCCcEEEcCCCC-CHHHHHHHHHhCCCCcE-EEEEEcCHHHHHHH
Q 022042          155 RLSQPDSQENGWLLDGYPR-SLSQATALKKYGFQPDL-FILLEVPEDTLVER  204 (303)
Q Consensus       155 ~l~~~~~~~~~~Vldg~p~-~~~~~~~l~~~~~~pd~-vI~L~~~~e~~~~R  204 (303)
                      ........+ ..|+..|.. .....+.+.+......+ +|||++|.+++.+|
T Consensus        88 ~a~~~~~~G-~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R  138 (198)
T PRK03846         88 VAKLMVDAG-LVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR  138 (198)
T ss_pred             HHHHHhhCC-CEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc
Confidence            111111123 344555543 23444445443322234 79999999999999

>PLN02348 phosphoribulokinase

Probab=99.03  E-value=3.1e-09  Score=97.96  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=30.6

Q ss_pred             cchhhhhhcc--cCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           71 SANFQVLASA--TVEPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        71 ~~~~~~~~~~--~~~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      |...+..+..  ..++.+|+|.|++||||||+++.|++.||
T Consensus        34 ~~~~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         34 PAASSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             chhHHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3344443333  35778999999999999999999999986

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=99.02  E-value=1.4e-08  Score=91.00  Aligned_cols=96  Identities=16%  Similarity=0.271  Sum_probs=56.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCC-CC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP-DS  161 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~-~~  161 (303)
                      .+.+|+|+|++||||||+++.|. ..|+..++--                           +...+..+ .+.+... ..
T Consensus         5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~---------------------------~~~L~~~l-~~~~~~~~~~   55 (288)
T PRK05416          5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDNL---------------------------PPSLLPKL-VELLAQSGGI   55 (288)
T ss_pred             CceEEEEECCCCCcHHHHHHHHH-HcCCeEECCc---------------------------CHHHHHHH-HHHHHhcCCC
Confidence            34589999999999999999996 4687766321                           11111111 1111111 11


Q ss_pred             CCCcEEEcCCCC-----CHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042          162 QENGWLLDGYPR-----SLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR  208 (303)
Q Consensus       162 ~~~~~Vldg~p~-----~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R  208 (303)
                      ..-.+++|-...     .......+.+.+ ....+|||+++.+++++|+..+
T Consensus        56 ~~~av~iD~r~~~~~~~~~~~~~~L~~~g-~~~~iI~L~a~~e~L~~Rl~~~  106 (288)
T PRK05416         56 RKVAVVIDVRSRPFFDDLPEALDELRERG-IDVRVLFLDASDEVLIRRYSET  106 (288)
T ss_pred             CCeEEEEccCchhhHHHHHHHHHHHHHcC-CcEEEEEEECCHHHHHHHHhhc
Confidence            123466665221     112333344443 3346899999999999999753

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=99.01  E-value=1.4e-09  Score=91.32  Aligned_cols=36  Identities=28%  Similarity=0.390  Sum_probs=32.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRA  121 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~~~  121 (303)
                      +|+|.|++||||||+|+.|++.+ +..+|++|+++..
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~   37 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP   37 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence            47899999999999999999999 6889999988654

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=99.00  E-value=6.3e-09  Score=105.33  Aligned_cols=40  Identities=28%  Similarity=0.542  Sum_probs=37.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE  122 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~  122 (303)
                      ..++|+|.||+||||||+|+.||++||+.+++++.++|..
T Consensus        33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~   72 (863)
T PRK12269         33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF   72 (863)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence            3469999999999999999999999999999999999875

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=99.00  E-value=1.4e-09  Score=85.32  Aligned_cols=108  Identities=20%  Similarity=0.288  Sum_probs=53.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHH-cCCcchHHHHHHHHcCCCcChHH---HHHHHHHHHcCCCCC
Q 022042           87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA-AGSENGKRAKEHMEKGQLVPDEI---VVTMVKERLSQPDSQ  162 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~-~~~~~~~~i~~~~~~g~~~~~~~---~~~~l~~~l~~~~~~  162 (303)
                      |+|.|++||||||+|+.|+++++.       .+..... .+......-............+.   +...+..... ....
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   72 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLGD-------IIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIR-RMNK   72 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCH-------HHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHH-HHTT
T ss_pred             CEEECCCCCCHHHHHHHHHHHHCc-------HHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhc-cccc
Confidence            789999999999999999999821       2211111 11111100000011112222222   2222222211 1122


Q ss_pred             CCcEEEcCCCCCHHHHHHHHHhCCCCcEE-EEEEcCHHHHHHHHhcCC
Q 022042          163 ENGWLLDGYPRSLSQATALKKYGFQPDLF-ILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       163 ~~~~Vldg~p~~~~~~~~l~~~~~~pd~v-I~L~~~~e~~~~Rl~~R~  209 (303)
                      ...+|+|+......       ........ |||+||++++.+|+.+|.
T Consensus        73 ~~~~iid~~~~~~~-------~~~~~~~~~i~L~~~~e~~~~R~~~R~  113 (129)
T PF13238_consen   73 GRNIIIDGILSNLE-------LERLFDIKFIFLDCSPEELRKRLKKRG  113 (129)
T ss_dssp             TSCEEEEESSEEEC-------ETTEEEESSEEEE--HHHHHHHHHCTT
T ss_pred             CCcEEEecccchhc-------ccccceeeEEEEECCHHHHHHHHHhCC
Confidence            56789998532110       00012223 999999999999999986

...

>PHA03132 thymidine kinase; Provisional

Probab=99.00  E-value=2.3e-08  Score=96.63  Aligned_cols=127  Identities=17%  Similarity=0.172  Sum_probs=67.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCC---CcChHHHH----------
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ---LVPDEIVV----------  149 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~---~~~~~~~~----------  149 (303)
                      ..++|+|+|+.||||||+++.|++.+|..++-..+=......-.+..+..+.+.+..+.   ..+...+.          
T Consensus       256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~Pf  335 (580)
T PHA03132        256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATPF  335 (580)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHH
Confidence            46899999999999999999999998544432211000000000123444444444321   11111110          


Q ss_pred             HHHH---HHH-------cCCCCCCCcEEEcCCCCCH-H---------------H-HHHHHHhC-CCCcEEEEEEcCHHHH
Q 022042          150 TMVK---ERL-------SQPDSQENGWLLDGYPRSL-S---------------Q-ATALKKYG-FQPDLFILLEVPEDTL  201 (303)
Q Consensus       150 ~~l~---~~l-------~~~~~~~~~~Vldg~p~~~-~---------------~-~~~l~~~~-~~pd~vI~L~~~~e~~  201 (303)
                      ..+.   +.+       ......+..+|+|.|+... .               . ...+.... ..||++|||+++++++
T Consensus       336 l~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~a  415 (580)
T PHA03132        336 RALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEEN  415 (580)
T ss_pred             HHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHHH
Confidence            0001   111       1111234567778754211 1               1 12222222 3589999999999999


Q ss_pred             HHHHhcCC
Q 022042          202 VERVVGRR  209 (303)
Q Consensus       202 ~~Rl~~R~  209 (303)
                      ++|+.+|+
T Consensus       416 lkRIkkRg  423 (580)
T PHA03132        416 LRRVKKRG  423 (580)
T ss_pred             HHHHHhcC
Confidence            99999885

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.98  E-value=8.3e-09  Score=85.94  Aligned_cols=109  Identities=15%  Similarity=0.191  Sum_probs=60.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH--HHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV--TMVKE  154 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~--~~l~~  154 (303)
                      ..+.+|+|+|++||||||+++.|+..+   |  +.+++.|.+- +.+..+..+...-+          ...+.  ..+..
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~-~~~~~~~~~~~~~r----------~~~~~~~~~~a~   70 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR-TNLSKGLGFSKEDR----------DTNIRRIGFVAN   70 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH-HHHhcCCCCChhhH----------HHHHHHHHHHHH
Confidence            346799999999999999999999987   2  4567776553 32221111100000          00000  11111


Q ss_pred             HHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHH
Q 022042          155 RLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV  205 (303)
Q Consensus       155 ~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl  205 (303)
                      .+..   .+..+++|+.-......+.+.... ..-.+|||++|.+++.+|.
T Consensus        71 ~~~~---~g~~vi~~~~~~~~~~~~~l~~~~-~~~~~v~l~~~~e~~~~R~  117 (175)
T PRK00889         71 LLTR---HGVIVLVSAISPYRETREEVRANI-GNFLEVFVDAPLEVCEQRD  117 (175)
T ss_pred             HHHh---CCCEEEEecCCCCHHHHHHHHhhc-CCeEEEEEcCCHHHHHHhC
Confidence            1211   244566665322233334444433 2346999999999999994

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.97  E-value=3.7e-08  Score=82.72  Aligned_cols=111  Identities=10%  Similarity=0.069  Sum_probs=62.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERL  156 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l  156 (303)
                      ..+.+|+|+|++||||||+++.|+..+   |  ..+++.|.+- ..+..+..+...-           .......+....
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r-~~l~~~~~~~~~~-----------~~~~~~~~~~~~   83 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR-HGLNKDLGFSEED-----------RKENIRRIGEVA   83 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH-hhhccccCCCHHH-----------HHHHHHHHHHHH
Confidence            456899999999999999999999987   3  3455555433 2221111111000           000111111111


Q ss_pred             cCCCCCCCcEEEcCCCCCHHHHHHHHHhCC-CCcEEEEEEcCHHHHHHH
Q 022042          157 SQPDSQENGWLLDGYPRSLSQATALKKYGF-QPDLFILLEVPEDTLVER  204 (303)
Q Consensus       157 ~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~-~pd~vI~L~~~~e~~~~R  204 (303)
                      ......+..+|+|..-....+...+..... .+.++|||++|.+++.+|
T Consensus        84 ~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R  132 (184)
T TIGR00455        84 KLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR  132 (184)
T ss_pred             HHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence            112223667788863233444444544321 245789999999999998

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.96  E-value=8.2e-09  Score=84.19  Aligned_cols=114  Identities=15%  Similarity=0.167  Sum_probs=62.7

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCcee-ehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHH
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKY---GLVHI-AAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKER  155 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l---g~~~i-~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~  155 (303)
                      ...++.+|+++|.+||||||+|..|.++|   |+..+ =-+|-+|.-+..+-.+.+.            |....-.....
T Consensus        19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~e------------dR~eniRRvae   86 (197)
T COG0529          19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSRE------------DRIENIRRVAE   86 (197)
T ss_pred             hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChH------------HHHHHHHHHHH
Confidence            34567899999999999999999999988   54332 2235555544332222111            11100000011


Q ss_pred             HcCCCCCCCcEEEcCCCCCHHHHHHHHH--hCCCCcEEEEEEcCHHHHHHHH
Q 022042          156 LSQPDSQENGWLLDGYPRSLSQATALKK--YGFQPDLFILLEVPEDTLVERV  205 (303)
Q Consensus       156 l~~~~~~~~~~Vldg~p~~~~~~~~l~~--~~~~pd~vI~L~~~~e~~~~Rl  205 (303)
                      +.......+.+++..|-........+..  .+....+-||++||.++|.+|=
T Consensus        87 vAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RD  138 (197)
T COG0529          87 VAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRD  138 (197)
T ss_pred             HHHHHHHCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcC
Confidence            1111111455677765333332222222  2223457899999999999884

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=98.96  E-value=7.2e-09  Score=101.22  Aligned_cols=111  Identities=12%  Similarity=0.133  Sum_probs=63.6

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCC------ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGL------VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKE  154 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~------~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~  154 (303)
                      .+++.+|+|+|.+||||||+++.|++.++.      .+++.|.+ +..+..+..+...-++           .....+..
T Consensus       389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v-r~~l~ge~~f~~~er~-----------~~~~~l~~  456 (568)
T PRK05537        389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV-RKHLSSELGFSKEDRD-----------LNILRIGF  456 (568)
T ss_pred             cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH-HHhccCCCCCCHHHHH-----------HHHHHHHH
Confidence            345679999999999999999999999985      77777655 4433222111111111           11111111


Q ss_pred             HHcCCCCCCCcEEEcC-CCCCH--H-HHHHHHHhCCCCcEEEEEEcCHHHHHHHH
Q 022042          155 RLSQPDSQENGWLLDG-YPRSL--S-QATALKKYGFQPDLFILLEVPEDTLVERV  205 (303)
Q Consensus       155 ~l~~~~~~~~~~Vldg-~p~~~--~-~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl  205 (303)
                      ........+.++|+|. +|...  . ....+.+.+  ..++|||++|.+++.+|.
T Consensus       457 ~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g--~fivV~L~~p~e~l~~R~  509 (568)
T PRK05537        457 VASEITKNGGIAICAPIAPYRATRREVREMIEAYG--GFIEVHVATPLEVCEQRD  509 (568)
T ss_pred             HHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcC--CEEEEEEcCCHHHHHHhc
Confidence            1111112366777775 44321  1 122232222  225899999999999996

>PRK07429 phosphoribulokinase; Provisional

Probab=98.92  E-value=2e-08  Score=91.64  Aligned_cols=40  Identities=20%  Similarity=0.297  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CceeehHHHH
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLL  119 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~lg---~~~i~~d~l~  119 (303)
                      ...++.+|+|+|++||||||+++.|++.++   ..++..|++.
T Consensus         4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~   46 (327)
T PRK07429          4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH   46 (327)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence            345678999999999999999999999987   4567777764

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=98.91  E-value=1.2e-08  Score=84.62  Aligned_cols=122  Identities=15%  Similarity=0.182  Sum_probs=66.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC--CceeehHHHHHHHHHcCC--cchHHHHHHHHcCCCcC--hHHHHHHHHHHHcC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYG--LVHIAAGDLLRAEIAAGS--ENGKRAKEHMEKGQLVP--DEIVVTMVKERLSQ  158 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg--~~~i~~d~l~~~~~~~~~--~~~~~i~~~~~~g~~~~--~~~~~~~l~~~l~~  158 (303)
                      .+|+|.|++.|||||+|+.|.+.+.  +.++++|.++........  ..+-.   +-..+....  ...+...+...+..
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~iaa   78 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLE---PAGDRPDGGPLFRRLYAAMHAAIAA   78 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEE---EETTSEEE-HHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCcccc---ccccCCchhHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999985  467888888774322100  00000   000000000  00111222222222


Q ss_pred             CCCCCCcEEEcCCCCCHHH-HHHHHH-hCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          159 PDSQENGWLLDGYPRSLSQ-ATALKK-YGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       159 ~~~~~~~~Vldg~p~~~~~-~~~l~~-~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      ....+..+|+|+......+ .+.|++ ....+-++|-+.||.+++.+|-..|.
T Consensus        79 ~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~Rg  131 (174)
T PF07931_consen   79 MARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARG  131 (174)
T ss_dssp             HHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHT
T ss_pred             HHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcC
Confidence            2223778999975444443 444533 34567789999999999999998886

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=98.90  E-value=3.7e-08  Score=87.57  Aligned_cols=112  Identities=23%  Similarity=0.226  Sum_probs=58.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ  158 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~  158 (303)
                      |++|+|+|.|||||||+|+.|++.+   +  ..+++.+.+.   +.... +...-.+...      ...+...+...+..
T Consensus         1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~-y~~~~~Ek~~------R~~l~s~v~r~ls~   70 (270)
T PF08433_consen    1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRND-YADSKKEKEA------RGSLKSAVERALSK   70 (270)
T ss_dssp             E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSS-S--GGGHHHH------HHHHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhh-hhchhhhHHH------HHHHHHHHHHhhcc
Confidence            4689999999999999999999976   2  3456544443   11111 1100000000      11233334444433


Q ss_pred             CCCCCCcEEEcCCCCC---HHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          159 PDSQENGWLLDGYPRS---LSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       159 ~~~~~~~~Vldg~p~~---~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                          ...+|+|+--..   ..+.-.+.+......++||++++.+.+++|=.+|.
T Consensus        71 ----~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~  120 (270)
T PF08433_consen   71 ----DTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRP  120 (270)
T ss_dssp             -----SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT
T ss_pred             ----CeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccC
Confidence                467888973221   22232344445567789999999999999998885

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=98.89  E-value=1.2e-08  Score=93.20  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=29.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhC------CceeehHHHHH
Q 022042           87 IMISGAPASGKGTQCELIKEKYG------LVHIAAGDLLR  120 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~lg------~~~i~~d~l~~  120 (303)
                      ++|+|+|||||||+++.|++.+.      +.+++.|+++.
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~   41 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP   41 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence            67999999999999999998875      34889998874

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.87  E-value=1e-08  Score=86.07  Aligned_cols=26  Identities=23%  Similarity=0.404  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      +..|+|+||+||||+|++++|.+.++
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence            45789999999999999999999875

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.86  E-value=3.6e-07  Score=85.99  Aligned_cols=42  Identities=24%  Similarity=0.502  Sum_probs=33.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI  123 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~  123 (303)
                      .+|.+|+|.|++|+||||++..|+.++|+.++-..|.+++.+
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~l  294 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVL  294 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHH
Confidence            468999999999999999999999999998553334444433

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.86  E-value=2.1e-08  Score=96.55  Aligned_cols=102  Identities=18%  Similarity=0.217  Sum_probs=73.3

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      ...+.+|++.|+|||||||+|+.+++.+|+.+|+.|.+-.                        .+.......+.+..  
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------------~~~~~~~a~~~L~~--  419 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------------TQNCLTACERALDQ--  419 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------------HHHHHHHHHHHHhC--
Confidence            3467899999999999999999999999999999987621                        01122333444433  


Q ss_pred             CCCCcEEEcCCCCCHHHHHHH---HHhCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042          161 SQENGWLLDGYPRSLSQATAL---KKYGFQPDLFILLEVPEDTLVERVVGRRL  210 (303)
Q Consensus       161 ~~~~~~Vldg~p~~~~~~~~l---~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~  210 (303)
                        +..+|+|.--....+...|   .+....+-.+||+++|.+++.+|...|..
T Consensus       420 --G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~  470 (526)
T TIGR01663       420 --GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL  470 (526)
T ss_pred             --CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence              7789999844444343333   23333466799999999999999998853

Note that the EC number for the kinase function is: 2.7.1.78

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.84  E-value=2.9e-08  Score=86.40  Aligned_cols=29  Identities=24%  Similarity=0.387  Sum_probs=25.7

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ..++.+|+|.|++||||||+++.|+..+.
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            35678999999999999999999998874

>COG0645 Predicted kinase [General function prediction only]

Probab=98.84  E-value=3.1e-08  Score=80.51  Aligned_cols=120  Identities=20%  Similarity=0.192  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcCh--HHHHHHHHHHHcCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD--EIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~--~~~~~~l~~~l~~~~~~  162 (303)
                      ..+++.|.||+||||+|+.|++.+|..+|..|.+.+.. ..-....     -...|.+.+.  ...+..+...-......
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L-~g~p~~~-----r~~~g~ys~~~~~~vy~~l~~~A~l~l~~   75 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRL-FGVPEET-----RGPAGLYSPAATAAVYDELLGRAELLLSS   75 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHh-cCCcccc-----cCCCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence            46889999999999999999999999999998776553 2200000     0001211111  11222222222222223


Q ss_pred             CCcEEEcCCCCCHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042          163 ENGWLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRL  210 (303)
Q Consensus       163 ~~~~Vldg~p~~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~  210 (303)
                      +..+|+|+--....+...+..   ....+...|.++++.+++.+|+..|..
T Consensus        76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~  126 (170)
T COG0645          76 GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG  126 (170)
T ss_pred             CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence            788999983233333332222   223356789999999999999999974

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.83  E-value=2.5e-09  Score=90.68  Aligned_cols=24  Identities=29%  Similarity=0.349  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           86 KIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      +|+|+|++||||||+|+.|+..|+
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999999996

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.81  E-value=2.7e-08  Score=80.84  Aligned_cols=111  Identities=15%  Similarity=0.152  Sum_probs=54.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHc
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS  157 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~  157 (303)
                      ++.+|+|+|.+||||||+|+.|.++|   |  ..+++.|.+ +..+..+-.+...-+....       . ....+...+.
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l-R~~l~~dl~fs~~dR~e~~-------r-r~~~~A~ll~   71 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL-RHGLNADLGFSKEDREENI-------R-RIAEVAKLLA   71 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH-CTTTTTT--SSHHHHHHHH-------H-HHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch-hhccCCCCCCCHHHHHHHH-------H-HHHHHHHHHH
Confidence            46799999999999999999999988   3  345555544 3222221111111000000       0 0011111121


Q ss_pred             CCCCCCCcEEEcCCCCCHHHHHHHHHhC-CCCcEEEEEEcCHHHHHHHH
Q 022042          158 QPDSQENGWLLDGYPRSLSQATALKKYG-FQPDLFILLEVPEDTLVERV  205 (303)
Q Consensus       158 ~~~~~~~~~Vldg~p~~~~~~~~l~~~~-~~pd~vI~L~~~~e~~~~Rl  205 (303)
                      .   ++..+|+.......+..+...+.. ....+.|||+||.+++.+|=
T Consensus        72 ~---~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD  117 (156)
T PF01583_consen   72 D---QGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRD  117 (156)
T ss_dssp             H---TTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred             h---CCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence            1   244455554322222222222211 11357999999999999994

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.81  E-value=7.2e-08  Score=78.26  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=59.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---CC--ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042           86 KIMISGAPASGKGTQCELIKEKY---GL--VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l---g~--~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      +|+|+|.|||||||+|+.|++.+   |.  .+++.|.+ +..+.....+...           ........+........
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~-r~~l~~~~~~~~~-----------~~~~~~~~~~~~a~~l~   68 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV-RHGLNKDLGFSRE-----------DREENIRRIAEVAKLLA   68 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH-HHhhhhccCCCcc-----------hHHHHHHHHHHHHHHHH
Confidence            47899999999999999999998   54  34444443 3322211100000           00011111111111111


Q ss_pred             CCCCcEEEcCCCCCHHHHHHHHHhC-CCCcEEEEEEcCHHHHHHHHhc
Q 022042          161 SQENGWLLDGYPRSLSQATALKKYG-FQPDLFILLEVPEDTLVERVVG  207 (303)
Q Consensus       161 ~~~~~~Vldg~p~~~~~~~~l~~~~-~~pd~vI~L~~~~e~~~~Rl~~  207 (303)
                      ..+..+|+|..-....+...+.+.. ..+..+|||++|.+++.+|-.+
T Consensus        69 ~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          69 DAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             hCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence            2356678886323333333333321 2456789999999999999644

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=98.76  E-value=5.1e-07  Score=79.78  Aligned_cols=102  Identities=20%  Similarity=0.356  Sum_probs=59.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcC-CCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ-PDSQ  162 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~-~~~~  162 (303)
                      |.+|+|+|.+||||||..+.| +.+|+..|+-  +                         |...+..++...... ....
T Consensus         1 m~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDN--l-------------------------P~~Ll~~l~~~~~~~~~~~~   52 (284)
T PF03668_consen    1 MELVIITGLSGAGKSTALRAL-EDLGYYCVDN--L-------------------------PPSLLPQLIELLAQSNSKIE   52 (284)
T ss_pred             CeEEEEeCCCcCCHHHHHHHH-HhcCeeEEcC--C-------------------------cHHHHHHHHHHHHhcCCCCc
Confidence            458999999999999999999 4588877731  1                         222222222221111 1111


Q ss_pred             CCcEEEcCCC----CCH-HHHHHHHHhCCCCcEEEEEEcCHHHHHHHHh-cCCCCCCC
Q 022042          163 ENGWLLDGYP----RSL-SQATALKKYGFQPDLFILLEVPEDTLVERVV-GRRLDPVT  214 (303)
Q Consensus       163 ~~~~Vldg~p----~~~-~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~-~R~~~~~~  214 (303)
                      .-.+++|--.    ... .....+.+.+ ..-.++||+|+++++++|.. -|+.||..
T Consensus        53 ~~Ai~iD~R~~~~~~~~~~~~~~l~~~~-~~~~ilFLdA~d~~LirRy~eTRR~HPL~  109 (284)
T PF03668_consen   53 KVAIVIDIRSREFFEDLFEALDELRKKG-IDVRILFLDASDEVLIRRYSETRRRHPLS  109 (284)
T ss_pred             eEEEEEeCCChHHHHHHHHHHHHHHhcC-CceEEEEEECChHHHHHHHHhccCCCCCC
Confidence            2336667411    111 1222233333 23469999999999999997 45556543

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PLN02772 guanylate kinase

Probab=98.76  E-value=7.6e-08  Score=88.83  Aligned_cols=67  Identities=22%  Similarity=0.394  Sum_probs=42.8

Q ss_pred             ecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHH--HHhhcceEEEcCCCCHHHHHHHHHHHHH
Q 022042          218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL--SLYEDVTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~--~~~~~~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                      +.+.+.||+.+++.+||..|..+.++.+++|+..+..+.....  ..|   -++|.++ ++++.++++.++|.
T Consensus       249 v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A~~Ei~~~~~~~~f---D~vIvND-dLe~A~~~L~~iL~  317 (398)
T PLN02772        249 IFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAEAELEQGKSSGIF---DHILYND-NLEECYKNLKKLLG  317 (398)
T ss_pred             EEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccCCC---CEEEECC-CHHHHHHHHHHHHh
Confidence            3444556666666666666667778999999998865433211  122   2344554 88888888887764

>PRK05439 pantothenate kinase; Provisional

Probab=98.73  E-value=2.2e-08  Score=90.35  Aligned_cols=41  Identities=24%  Similarity=0.361  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CceeehHHHHH
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKYG-------LVHIAAGDLLR  120 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~lg-------~~~i~~d~l~~  120 (303)
                      ....+.+|+|+|++||||||+|+.|++.++       ..++++|+++.
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~  129 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY  129 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence            345678999999999999999999998663       35788887764

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.73  E-value=8.6e-08  Score=95.40  Aligned_cols=114  Identities=11%  Similarity=0.057  Sum_probs=64.0

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHH
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKE  154 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l-----g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~  154 (303)
                      ...++.+|+++|.|||||||+|+.|++++     ++.+++.|++-. .+..+..+....+           ......+..
T Consensus       456 ~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~-~l~~~~~~~~~~r-----------~~~~~~l~~  523 (632)
T PRK05506        456 KGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH-GLNRDLGFSDADR-----------VENIRRVAE  523 (632)
T ss_pred             hCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh-ccCCCCCCCHHHH-----------HHHHHHHHH
Confidence            34468899999999999999999999997     346677766543 2221111111100           001111111


Q ss_pred             HHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCC-CCcEEEEEEcCHHHHHHHH
Q 022042          155 RLSQPDSQENGWLLDGYPRSLSQATALKKYGF-QPDLFILLEVPEDTLVERV  205 (303)
Q Consensus       155 ~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~-~pd~vI~L~~~~e~~~~Rl  205 (303)
                      ........+..+|+|..-......+.+.+... .+.++|||+++.+++.+|.
T Consensus       524 ~a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~  575 (632)
T PRK05506        524 VARLMADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD  575 (632)
T ss_pred             HHHHHHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC
Confidence            11111122455777753222333344444322 2447999999999999993

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.72  E-value=9.5e-08  Score=85.23  Aligned_cols=34  Identities=21%  Similarity=0.241  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLL  119 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~  119 (303)
                      +|+|+|++||||||+++.|+..+   +..++..|++.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~   37 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH   37 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence            47899999999999999999877   45577777654

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK15453 phosphoribulokinase; Provisional

Probab=98.71  E-value=5.2e-08  Score=86.18  Aligned_cols=39  Identities=13%  Similarity=0.239  Sum_probs=32.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLR  120 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~  120 (303)
                      .++++|+|+|.+||||||+|+.|++.|+     ..+++.|++.+
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            4678999999999999999999998774     45677776654

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.71  E-value=2.1e-06  Score=73.94  Aligned_cols=50  Identities=24%  Similarity=0.367  Sum_probs=41.3

Q ss_pred             hhhcccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHc
Q 022042           76 VLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA  125 (303)
Q Consensus        76 ~~~~~~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~  125 (303)
                      .+--..+.|.+|+|-|++|.||||+|..||.++|+.++=..|.+|+.+..
T Consensus        81 R~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~  130 (299)
T COG2074          81 RRIRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRK  130 (299)
T ss_pred             HHHhccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHH
Confidence            33445567899999999999999999999999999877666777777664

>COG4639 Predicted kinase [General function prediction only]

Probab=98.70  E-value=1.4e-07  Score=75.42  Aligned_cols=112  Identities=19%  Similarity=0.106  Sum_probs=70.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      ..+++.|++||||||+++...  .....++++++-...-.   ..+.    ....+   .+..+.+++...+++....++
T Consensus         3 ~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~lg~---~~~~----e~sqk---~~~~~~~~l~~~l~qrl~~Gk   70 (168)
T COG4639           3 ILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLLGV---SASK----ENSQK---NDELVWDILYKQLEQRLRRGK   70 (168)
T ss_pred             eEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHhhh---chhh----hhccc---cHHHHHHHHHHHHHHHHHcCC
Confidence            478999999999999998642  36788888877543210   0110    11111   233444555555544444588


Q ss_pred             cEEEcCCCCCHHH---HHHHHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042          165 GWLLDGYPRSLSQ---ATALKKYGFQPDLFILLEVPEDTLVERVVGR  208 (303)
Q Consensus       165 ~~Vldg~p~~~~~---~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R  208 (303)
                      ..|+|......++   ...+.........+|++|.|.+.|.+|-+.|
T Consensus        71 ~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~  117 (168)
T COG4639          71 FTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR  117 (168)
T ss_pred             eEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence            8999986544333   3334444445567899999999999997644

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.70  E-value=5e-08  Score=68.45  Aligned_cols=23  Identities=35%  Similarity=0.511  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +|+|+|++||||||+++.|++.|
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999985

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.69  E-value=1.6e-08  Score=87.38  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC-------CceeehHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKEKYG-------LVHIAAGDLL  119 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg-------~~~i~~d~l~  119 (303)
                      +|+|.|++||||||+|+.|+..+.       ..++++|++.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            478999999999999999999883       3567777664

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.68  E-value=3e-08  Score=88.84  Aligned_cols=40  Identities=25%  Similarity=0.382  Sum_probs=31.0

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CceeehHHHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYG-------LVHIAAGDLLR  120 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg-------~~~i~~d~l~~  120 (303)
                      ...|.+|+|.|++||||||+|+.|...+.       +..+++|....
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~  105 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH  105 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence            45678999999999999999998876653       34567776543

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.67  E-value=2.9e-08  Score=84.49  Aligned_cols=119  Identities=20%  Similarity=0.324  Sum_probs=62.9

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHHHHHHHcCCcchHHHHHHHHcCC-Cc----ChHHHHHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-LV----PDEIVVTMV  152 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~-~~----~~~~~~~~l  152 (303)
                      ..+|..|+|.|+|||||||++..+...+   ++.+|+.|++....     +....+........ ..    ...+...++
T Consensus        12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~-----p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   86 (199)
T PF06414_consen   12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH-----PDYDELLKADPDEASELTQKEASRLAEKLI   86 (199)
T ss_dssp             -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS-----TTHHHHHHHHCCCTHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc-----cchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            3678899999999999999999999987   67889988764321     11111111000000 00    011222333


Q ss_pred             HHHHcCCCCCCCcEEEcCCCCCHHHH----HHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          153 KERLSQPDSQENGWLLDGYPRSLSQA----TALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       153 ~~~l~~~~~~~~~~Vldg~p~~~~~~----~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      ...+.+    +..+|+|+.-......    +.+++.|.. -.++++.++++..+.|+..|.
T Consensus        87 ~~a~~~----~~nii~E~tl~~~~~~~~~~~~~k~~GY~-v~l~~v~~~~e~s~~rv~~R~  142 (199)
T PF06414_consen   87 EYAIEN----RYNIIFEGTLSNPSKLRKLIREAKAAGYK-VELYYVAVPPELSIERVRQRY  142 (199)
T ss_dssp             HHHHHC----T--EEEE--TTSSHHHHHHHHHHHCTT-E-EEEEEE---HHHHHHHHHHHH
T ss_pred             HHHHHc----CCCEEEecCCCChhHHHHHHHHHHcCCce-EEEEEEECCHHHHHHHHHHHH
Confidence            444433    5679999843433333    334445543 467899999999999999884

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=98.66  E-value=1.7e-07  Score=78.00  Aligned_cols=123  Identities=18%  Similarity=0.203  Sum_probs=74.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHHHHHHHcCC-----------------cchHHHHHHHHcCCCc
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAGS-----------------ENGKRAKEHMEKGQLV  143 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~~~~~~~~~-----------------~~~~~i~~~~~~g~~~  143 (303)
                      ++..+|+|.|...|||||||+.|.+.| |+..|+-|+++...-+-..                 .+.+.+.-++......
T Consensus         2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~   81 (225)
T KOG3308|consen    2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNA   81 (225)
T ss_pred             ceEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCcccc
Confidence            455799999999999999999999988 6788888887765322110                 1123333444443333


Q ss_pred             ChHHHHHHH--------HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042          144 PDEIVVTMV--------KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL  210 (303)
Q Consensus       144 ~~~~~~~~l--------~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~  210 (303)
                      ++ ....++        ....+........+++|||--....  -+.   ...|..|++..+.+++.+|-..|..
T Consensus        82 ~~-ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~--p~~---~~~d~~im~~~~y~~~krRr~~Rt~  150 (225)
T KOG3308|consen   82 PE-AREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYK--PQV---DLFDRIIMLTLDYETCKRRREARTY  150 (225)
T ss_pred             ch-HhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecc--hhh---hhhhhheeeeccHHHHHHhhccccc
Confidence            22 111111        1112222223456889996311100  011   1357899999999999999988864

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=98.65  E-value=1.6e-06  Score=69.84  Aligned_cols=90  Identities=18%  Similarity=0.166  Sum_probs=57.6

Q ss_pred             CCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcH
Q 022042          163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE  242 (303)
Q Consensus       163 ~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~  242 (303)
                      +..+|.+|--...-++....    .--+++.|.++++++.+|+.+|+                             .++.
T Consensus        94 G~vvl~NgSRa~Lp~arrry----~~Llvv~ita~p~VLaqRL~~RG-----------------------------REs~  140 (192)
T COG3709          94 GDVVLVNGSRAVLPQARRRY----PQLLVVCITASPEVLAQRLAERG-----------------------------RESR  140 (192)
T ss_pred             CCEEEEeccHhhhHHHHHhh----hcceeEEEecCHHHHHHHHHHhc-----------------------------cCCH
Confidence            45566666422222322221    12268999999999999999885                             2345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          243 EKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       243 e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                      |.+..|+.......     .-+..+..|||++.++...+++...|.+-
T Consensus       141 eeI~aRL~R~a~~~-----~~~~dv~~idNsG~l~~ag~~ll~~l~~~  183 (192)
T COG3709         141 EEILARLARAARYT-----AGPGDVTTIDNSGELEDAGERLLALLHQD  183 (192)
T ss_pred             HHHHHHHHhhcccc-----cCCCCeEEEcCCCcHHHHHHHHHHHHHhh
Confidence            66666665432211     11346889999999999998888877643

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.60  E-value=2.1e-07  Score=77.94  Aligned_cols=36  Identities=28%  Similarity=0.364  Sum_probs=31.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh-----CCceeehHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLLRA  121 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l-----g~~~i~~d~l~~~  121 (303)
                      +|+|.|++||||||+|+.|++.+     +..+|+.|++.+.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~   41 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP   41 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence            47899999999999999999986     4578999999864

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.57  E-value=4.5e-07  Score=87.54  Aligned_cols=40  Identities=13%  Similarity=0.150  Sum_probs=32.9

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHH
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLL  119 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~  119 (303)
                      ....+.+|+|.|++||||||+++.|+..+ +...|++|+..
T Consensus        61 ~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~  101 (656)
T PLN02318         61 KNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN  101 (656)
T ss_pred             cCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence            34456899999999999999999999987 45678887753

>PLN02165 adenylate isopentenyltransferase

Probab=98.50  E-value=6.2e-07  Score=81.38  Aligned_cols=40  Identities=18%  Similarity=0.247  Sum_probs=35.5

Q ss_pred             cccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHH
Q 022042           79 SATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL  118 (303)
Q Consensus        79 ~~~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l  118 (303)
                      ..+.++.+|+|+||+||||||++..|++.+|..+|++|.+
T Consensus        38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~   77 (334)
T PLN02165         38 EQNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM   77 (334)
T ss_pred             ccCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence            3455667999999999999999999999999999999876

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.43  E-value=6.5e-07  Score=78.66  Aligned_cols=35  Identities=14%  Similarity=0.285  Sum_probs=29.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLR  120 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~  120 (303)
                      +|+|+|.+||||||+++.|.+.|+     ..+|+.|++.+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            488999999999999999998773     45677777665

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PHA00729 NTP-binding motif containing protein

Probab=98.40  E-value=1.9e-06  Score=74.15  Aligned_cols=114  Identities=11%  Similarity=0.010  Sum_probs=62.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc--eeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLV--HIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP  159 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~--~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~  159 (303)
                      .....|+|+|+||+||||+|..|+++++..  .+..++....   .           ......+.-+.+...+.......
T Consensus        15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d---~-----------~~~~~fid~~~Ll~~L~~a~~~~   80 (226)
T PHA00729         15 NGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQ---Y-----------VQNSYFFELPDALEKIQDAIDND   80 (226)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHh---c-----------CCcEEEEEHHHHHHHHHHHHhcC
Confidence            345689999999999999999999987521  1212211100   0           00011122222333333333221


Q ss_pred             CCCCCcEEEcCCCCCHHH---H--------HHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042          160 DSQENGWLLDGYPRSLSQ---A--------TALKKYGFQPDLFILLEVPEDTLVERVVGRRL  210 (303)
Q Consensus       160 ~~~~~~~Vldg~p~~~~~---~--------~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~  210 (303)
                      . ...-+|+|++.-....   .        ..........++++++.++++.+.+++..|+.
T Consensus        81 ~-~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~  141 (226)
T PHA00729         81 Y-RIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGW  141 (226)
T ss_pred             C-CCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCC
Confidence            1 1134688984321111   1        01111122478899999999999999999864

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=98.32  E-value=4.2e-05  Score=66.38  Aligned_cols=148  Identities=14%  Similarity=0.251  Sum_probs=80.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHH-HcCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKER-LSQPDSQE  163 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~-l~~~~~~~  163 (303)
                      .+|+|+|.+|||||+-.+.|. .+|+.+++  ++                         |.+.+-.++.-. ..+.....
T Consensus         2 ~lvIVTGlSGAGKsvAl~~lE-DlGyycvD--NL-------------------------Pp~Llp~~~~~~~~~~~~~~k   53 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVLE-DLGYYCVD--NL-------------------------PPQLLPKLADLMLTLESRITK   53 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHHH-hcCeeeec--CC-------------------------CHHHHHHHHHHHhhcccCCce
Confidence            478999999999999999994 47877662  11                         223222222211 11111112


Q ss_pred             CcEEEcC----CCCCH-HHHHHHHHhCCCCcEEEEEEcCHHHHHHHHh-cCCCCCCCCceecccCCCCCchHHHhhhccC
Q 022042          164 NGWLLDG----YPRSL-SQATALKKYGFQPDLFILLEVPEDTLVERVV-GRRLDPVTGKIYHVKYSPPETDEIAARLTKR  237 (303)
Q Consensus       164 ~~~Vldg----~p~~~-~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~-~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r  237 (303)
                      -.+++|-    |.... .....+.+.+..--.++||+++.+++++|.. .|+.||..+..                    
T Consensus        54 vAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~--------------------  113 (286)
T COG1660          54 VAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDG--------------------  113 (286)
T ss_pred             EEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccC--------------------
Confidence            3467773    22222 2233344443111358999999999999997 45555543320                    


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcC-CCCHHHHHHHHHHHHHH
Q 022042          238 FDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNG-SVNKEDVFAQIDVALTN  289 (303)
Q Consensus       238 ~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~-~~s~eev~~~I~~~l~~  289 (303)
                       .     +..-++.-++...++.+.-+   .+||. +.++-++-+.|...+..
T Consensus       114 -~-----l~~~I~~ERelL~pLk~~A~---~vIDTs~ls~~~Lr~~i~~~f~~  157 (286)
T COG1660         114 -L-----LLEAIAKERELLAPLREIAD---LVIDTSELSVHELRERIRTRFLG  157 (286)
T ss_pred             -c-----HHHHHHHHHHHHHHHHHHhh---hEeecccCCHHHHHHHHHHHHcc
Confidence             0     11222223333444443322   35664 57888877777776653

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=98.27  E-value=9.6e-06  Score=69.88  Aligned_cols=151  Identities=18%  Similarity=0.210  Sum_probs=73.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHHHHcCC---------cchHHHHHHHHcCCCcChHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAEIAAGS---------ENGKRAKEHMEKGQLVPDEIV  148 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~~~~~~~---------~~~~~i~~~~~~g~~~~~~~~  148 (303)
                      ...+|++.|.|+.|||++|+.|++.|   |  ..+++++++-|+......         ..+..+++.+.      ...+
T Consensus        11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a------~~~l   84 (222)
T PF01591_consen   11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA------KEAL   84 (222)
T ss_dssp             --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH------HHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHH------HHHH
Confidence            34689999999999999999999876   3  367999998887655411         11122222111      1111


Q ss_pred             HHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhC-CCCcEEEEEE--cCHHHHHH-HHhcCCCCCCCCceecccCCC
Q 022042          149 VTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYG-FQPDLFILLE--VPEDTLVE-RVVGRRLDPVTGKIYHVKYSP  224 (303)
Q Consensus       149 ~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~-~~pd~vI~L~--~~~e~~~~-Rl~~R~~~~~~g~~~~~~~~~  224 (303)
                       +-+...+...  .+..-|+|+-..+....+.+.+.. .....++||+  |+++.+++ .+.......   ..|.     
T Consensus        85 -~dl~~~l~~~--~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~s---pDY~-----  153 (222)
T PF01591_consen   85 -EDLIEWLQEE--GGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNS---PDYK-----  153 (222)
T ss_dssp             -HHHHHHHHTS----SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTS---GGGT-----
T ss_pred             -HHHHHHHhcC--CCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCC---cccc-----
Confidence             2222233321  245678999777776665544421 0113455555  56555544 443221110   0010     


Q ss_pred             CCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHH
Q 022042          225 PETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL  260 (303)
Q Consensus       225 p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~  260 (303)
                          +      ...++-.+.+.+|++.|...++++-
T Consensus       154 ----~------~~~e~A~~Df~~RI~~Ye~~YEpl~  179 (222)
T PF01591_consen  154 ----G------MDPEEAIEDFKKRIEHYEKVYEPLD  179 (222)
T ss_dssp             ----T------S-HHHHHHHHHHHHHHHHTT-----
T ss_pred             ----c------CCHHHHHHHHHHHHHhhcccccccc
Confidence                0      0001134567789999999999887

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=98.24  E-value=3.4e-06  Score=70.59  Aligned_cols=115  Identities=18%  Similarity=0.245  Sum_probs=56.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcC-------CcchHHHH--HH---HHcC-------CCcChH
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAG-------SENGKRAK--EH---MEKG-------QLVPDE  146 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~-------~~~~~~i~--~~---~~~g-------~~~~~~  146 (303)
                      +|.|.|..|||++++|+.||++||+.+++- +++.+.....       ..+.+...  .+   +..+       ....++
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD   79 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence            688999999999999999999999999988 5655433321       01111111  11   1111       111122


Q ss_pred             HHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042          147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR  208 (303)
Q Consensus       147 ~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R  208 (303)
                      .+.......+.+... .+.+|+.|..  ....  +.  +....+-|+|.+|.+.+.+|++++
T Consensus        80 ~~~~~~~~~i~~la~-~~~~Vi~GR~--a~~i--l~--~~~~~l~V~i~A~~~~Rv~ri~~~  134 (179)
T PF13189_consen   80 KIFRAQSEIIRELAA-KGNCVIVGRC--ANYI--LR--DIPNVLHVFIYAPLEFRVERIMER  134 (179)
T ss_dssp             HHHHHHHHHHHHHHH----EEEESTT--HHHH--TT--T-TTEEEEEEEE-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc-cCCEEEEecC--Hhhh--hC--CCCCeEEEEEECCHHHHHHHHHHH
Confidence            222322222222211 2456666632  1111  11  112357899999999999999987

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=98.23  E-value=1.8e-06  Score=75.52  Aligned_cols=29  Identities=28%  Similarity=0.433  Sum_probs=25.7

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ....+.+|+|.|++|+||||+|+.|+..+
T Consensus        78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll  106 (283)
T COG1072          78 NQQRPFIIGIAGSVAVGKSTTARILQALL  106 (283)
T ss_pred             CCCCCEEEEeccCccccHHHHHHHHHHHH
Confidence            34567899999999999999999998876

>PRK09169 hypothetical protein; Validated

Probab=98.22  E-value=3.4e-05  Score=83.23  Aligned_cols=112  Identities=11%  Similarity=-0.006  Sum_probs=80.9

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      ......|+|+|.+|+||||+.+.|++++++.+++.|..+.+.      .++.|.+++.... .+.+.....+.+.+.   
T Consensus      2107 rL~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr--- 2176 (2316)
T PRK09169       2107 RLGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG-LSPEQAAARVRDALR--- 2176 (2316)
T ss_pred             HHhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC-chHHHHHHHHHHHhc---
Confidence            344568999999999999999999999999999999888774      5677777776544 555555556655552   


Q ss_pred             CCCCcEEEc-CC-CCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042          161 SQENGWLLD-GY-PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR  208 (303)
Q Consensus       161 ~~~~~~Vld-g~-p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R  208 (303)
                        ...+|-. || .........+...|    ++||++.+.+++.+|+.+.
T Consensus      2177 --~~vVLSTGGGav~~~enr~~L~~~G----lvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169       2177 --WEVVLPAEGFGAAVEQARQALGAKG----LRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred             --CCeEEeCCCCcccCHHHHHHHHHCC----EEEEEECCHHHHHHHhccC
Confidence              1223333 22 33444455566554    7999999999999999754

>PHA03136 thymidine kinase; Provisional

Probab=98.20  E-value=6e-05  Score=69.26  Aligned_cols=24  Identities=17%  Similarity=0.329  Sum_probs=22.0

Q ss_pred             CCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          186 FQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       186 ~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      ..||.+|||+++++++.+|+.+|.
T Consensus       190 p~pD~IIyL~l~~e~~~~RI~kRg  213 (378)
T PHA03136        190 PHGGNIVIMDLDECEHAERIIARG  213 (378)
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHcC
Confidence            358999999999999999999995

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=98.20  E-value=0.0003  Score=58.58  Aligned_cols=26  Identities=23%  Similarity=0.204  Sum_probs=23.2

Q ss_pred             CCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042          185 GFQPDLFILLEVPEDTLVERVVGRRL  210 (303)
Q Consensus       185 ~~~pd~vI~L~~~~e~~~~Rl~~R~~  210 (303)
                      ...+|.+|||.+++++|.+|+..|..
T Consensus       151 ~v~~dgiIYLrasPetc~~Ri~~R~R  176 (244)
T KOG4235|consen  151 DVSLDGIIYLRASPETCYKRIYLRAR  176 (244)
T ss_pred             ccccceEEEeecChHHHHHHHHHHhh
Confidence            36789999999999999999998853

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=98.11  E-value=0.00016  Score=62.60  Aligned_cols=155  Identities=16%  Similarity=0.112  Sum_probs=83.0

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      ...|.+|+|.|..||||+.+.+.|.+.++-..+.+-.+-                     .+...+.-...+........
T Consensus        28 ~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~---------------------~pt~eE~~~p~lwRfw~~lP   86 (230)
T TIGR03707        28 TGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALP---------------------KPSDRERTQWYFQRYVQHLP   86 (230)
T ss_pred             cCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCC---------------------CCCHHHHcChHHHHHHHhCC
Confidence            346889999999999999999999999864443321110                     00001111111122222222


Q ss_pred             CCCCcEEEcC-------------------CCCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCcee
Q 022042          161 SQENGWLLDG-------------------YPRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIY  218 (303)
Q Consensus       161 ~~~~~~Vldg-------------------~p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~  218 (303)
                      ..|...|+|+                   +.+...++..|++.   ....-+-+||+++.++..+|+.+|..++.+.-  
T Consensus        87 ~~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~W--  164 (230)
T TIGR03707        87 AAGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQW--  164 (230)
T ss_pred             CCCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccc--
Confidence            2233333332                   11122233333331   22334678999999999999999876554311  


Q ss_pred             cccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh---cceEEEcCCCCH
Q 022042          219 HVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE---DVTVEVNGSVNK  276 (303)
Q Consensus       219 ~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~---~~~~~Id~~~s~  276 (303)
                                        +.....-...+++..|...++.++..-.   ..+++|+++..-
T Consensus       165 ------------------k~~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~  207 (230)
T TIGR03707       165 ------------------KLSPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDKK  207 (230)
T ss_pred             ------------------cCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHH
Confidence                              1111122223456666666666554332   268889987543

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>PRK06761 hypothetical protein; Provisional

Probab=98.11  E-value=4.3e-05  Score=68.21  Aligned_cols=32  Identities=25%  Similarity=0.397  Sum_probs=26.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      .++|+|+|++||||||+++.|+++++...+++
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v   34 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEV   34 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence            35899999999999999999999997544433

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.10  E-value=2.9e-05  Score=62.58  Aligned_cols=141  Identities=18%  Similarity=0.212  Sum_probs=75.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh--CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY--GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l--g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      ...++.|+.||||||+...+-..+  ++.+|+.|++..+. .+..+....++.    +     ......+...+.    .
T Consensus         3 ~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i-~p~~p~~~~i~A----~-----r~ai~~i~~~I~----~   68 (187)
T COG4185           3 RLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQI-SPDNPTSAAIQA----A-----RVAIDRIARLID----L   68 (187)
T ss_pred             eEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhc-CCCCchHHHHHH----H-----HHHHHHHHHHHH----c
Confidence            456788999999999965554444  57889999887653 222222111111    1     111122222222    2


Q ss_pred             CCcEEEcC---CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042          163 ENGWLLDG---YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD  239 (303)
Q Consensus       163 ~~~~Vldg---~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~  239 (303)
                      +.++..+.   .+.-....+..+..|+...+.++.--+.|..++|+..|-..                        ...+
T Consensus        69 ~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~------------------------GGH~  124 (187)
T COG4185          69 GRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAK------------------------GGHD  124 (187)
T ss_pred             CCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhc------------------------CCCC
Confidence            55666654   22333444444555544433333334557889999877421                        1123


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHh
Q 022042          240 DTEEKVKLRLKTHHHNVEAVLSLY  263 (303)
Q Consensus       240 d~~e~~~~r~~~~~~~~~~~~~~~  263 (303)
                      -.++.++.|+..-.++....+...
T Consensus       125 IpED~Ir~RY~rsle~l~~~l~l~  148 (187)
T COG4185         125 IPEDKIRRRYRRSLELLAQALTLA  148 (187)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhc
Confidence            457778888877555555544443

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=98.08  E-value=2.7e-05  Score=73.21  Aligned_cols=44  Identities=16%  Similarity=0.181  Sum_probs=34.0

Q ss_pred             Ccchhhhhhccc---CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           70 NSANFQVLASAT---VEPLKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        70 ~~~~~~~~~~~~---~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      .|...|..-+..   -...+|+|+|++|||||||++.|+++||...+
T Consensus       202 ~p~~~w~~i~~~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v  248 (399)
T PRK08099        202 NPFRYWEYIPTEVRPFFVRTVAILGGESSGKSTLVNKLANIFNTTSA  248 (399)
T ss_pred             CHHHHHHhcCHHHhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence            355556544333   24578999999999999999999999998765

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=98.05  E-value=2.7e-05  Score=64.54  Aligned_cols=26  Identities=31%  Similarity=0.552  Sum_probs=23.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      ++|+|+|++||||||+|..|+..++.
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~   27 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGL   27 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCC
Confidence            57999999999999999999999874

>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type

Probab=98.03  E-value=0.00035  Score=57.56  Aligned_cols=116  Identities=17%  Similarity=0.157  Sum_probs=70.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCC---ceeehHHHHHHHHHcC-----------Ccch----HHHHHHHHcCCCcChHH
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGL---VHIAAGDLLRAEIAAG-----------SENG----KRAKEHMEKGQLVPDEI  147 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~---~~i~~d~l~~~~~~~~-----------~~~~----~~i~~~~~~g~~~~~~~  147 (303)
                      +|+|+|..+|||-|++..|.+.|+.   ..+...+-+++.....           .+..    ..+-++.+....-....
T Consensus         1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~   80 (182)
T TIGR01223         1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGF   80 (182)
T ss_pred             CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccH
Confidence            5889999999999999999999874   2566655555444321           1111    11222222111112233


Q ss_pred             HHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhc
Q 022042          148 VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVG  207 (303)
Q Consensus       148 ~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~  207 (303)
                      +.+.+...+.     ...||+++. |....+.+|......--+.|-+.++++++.+|.-.
T Consensus        81 F~r~~~~~~~-----~~v~iIsD~-Rr~~dv~~f~~~~g~~~~~VRV~AseetR~~Rgw~  134 (182)
T TIGR01223        81 FCRKIVEGIS-----QPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWV  134 (182)
T ss_pred             HHHHHHhccC-----CCEEEEeCC-CcccHHHHHHHHcCCceEEEEEecCHHHHHHHHHh
Confidence            4443333221     257888887 66667777776543344788999999999999844

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.00  E-value=5.4e-06  Score=64.99  Aligned_cols=29  Identities=28%  Similarity=0.542  Sum_probs=25.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           87 IMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      |+|.|+||+||||+++.|++.++.+++.+
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i   29 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEI   29 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence            67999999999999999999999766443

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.99  E-value=3.1e-05  Score=65.55  Aligned_cols=121  Identities=17%  Similarity=0.204  Sum_probs=62.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHH-HHHcCC--cchH---------HHHHHHHcCCCcChHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRA-EIAAGS--ENGK---------RAKEHMEKGQLVPDEIVVTM  151 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~-~~~~~~--~~~~---------~i~~~~~~g~~~~~~~~~~~  151 (303)
                      |.+++|.||+|+|||.+|-.||+++|.++|+.|.+.-- .+.-++  +...         .-...+..|. ++.+...+.
T Consensus         1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~   79 (233)
T PF01745_consen    1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHER   79 (233)
T ss_dssp             -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHH
T ss_pred             CcEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHH
Confidence            46889999999999999999999999999998854211 011010  0000         0112344454 445556677


Q ss_pred             HHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhC----CCCcEEEEEEcCHHHH-HHHHhcC
Q 022042          152 VKERLSQPDSQENGWLLDGYPRSLSQATALKKYG----FQPDLFILLEVPEDTL-VERVVGR  208 (303)
Q Consensus       152 l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~----~~pd~vI~L~~~~e~~-~~Rl~~R  208 (303)
                      +...+..... ++++|++|-.  ..-...+.+..    ...-.++++.++.+.. +.|..+|
T Consensus        80 Li~~v~~~~~-~~~~IlEGGS--ISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R  138 (233)
T PF01745_consen   80 LISEVNSYSA-HGGLILEGGS--ISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR  138 (233)
T ss_dssp             HHHHHHTTTT-SSEEEEEE----HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred             HHHHHHhccc-cCceEEeCch--HHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence            7777777776 7899999842  22233333321    1122467777776544 5566555

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=97.98  E-value=0.00039  Score=61.43  Aligned_cols=153  Identities=12%  Similarity=0.122  Sum_probs=82.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS  161 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~  161 (303)
                      ..+.+|+|.|..||||..+.+.|.+.++-..+.+-.+                     +.+...+.-...+.........
T Consensus        54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~---------------------~~Pt~eE~~~p~lWRfw~~lP~  112 (264)
T TIGR03709        54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSF---------------------KAPSAEELDHDFLWRIHKALPE  112 (264)
T ss_pred             CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeC---------------------CCCCHHHHcCchHHHHHHhCCC
Confidence            4588999999999999999999999985443332111                     0000011111111112222222


Q ss_pred             CCCcEEEcC--C-----------------CCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceec
Q 022042          162 QENGWLLDG--Y-----------------PRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYH  219 (303)
Q Consensus       162 ~~~~~Vldg--~-----------------p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~  219 (303)
                      .|...|+|+  |                 .+...++..|++.   ....-+-+||+++.++..+|+.+|..++.+.-   
T Consensus       113 ~G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~W---  189 (264)
T TIGR03709       113 RGEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNW---  189 (264)
T ss_pred             CCeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcccc---
Confidence            233333332  1                 1122222233331   22334678999999999999998875543211   


Q ss_pred             ccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHh---hcceEEEcCCCC
Q 022042          220 VKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY---EDVTVEVNGSVN  275 (303)
Q Consensus       220 ~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~---~~~~~~Id~~~s  275 (303)
                                       +.....-...+++..|...++.++..=   ...+++|+++..
T Consensus       190 -----------------k~s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk  231 (264)
T TIGR03709       190 -----------------KFSPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADDK  231 (264)
T ss_pred             -----------------cCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCH
Confidence                             111112233445667776666655442   236888998754

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=97.98  E-value=0.00041  Score=66.48  Aligned_cols=168  Identities=18%  Similarity=0.115  Sum_probs=90.6

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHc
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS  157 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg---~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~  157 (303)
                      ...+.+|+|.|..||||+++.+.|.+.++   +.+.+...                        +.+.+.-...+.....
T Consensus        37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~------------------------P~~eE~~~~flwRfw~   92 (493)
T TIGR03708        37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGR------------------------PSDEERERPPMWRFWR   92 (493)
T ss_pred             cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCC------------------------CCHHHhcCcHHHHHHH
Confidence            45678999999999999999999999885   33333211                        0001111111112222


Q ss_pred             CCCCCCCcEEEcC--C-----------------CCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042          158 QPDSQENGWLLDG--Y-----------------PRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTG  215 (303)
Q Consensus       158 ~~~~~~~~~Vldg--~-----------------p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g  215 (303)
                      .....|...|+|+  |                 .+...++..|++.   ....-+-+||+++.++..+|+.+|..++.+.
T Consensus        93 ~lP~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~  172 (493)
T TIGR03708        93 RLPPKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETR  172 (493)
T ss_pred             hCCCCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence            2222233333332  1                 1112222223331   2233467899999999999999997655431


Q ss_pred             ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh---cceEEEcCCCC---HHHHHHHHHHHHHH
Q 022042          216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE---DVTVEVNGSVN---KEDVFAQIDVALTN  289 (303)
Q Consensus       216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~---~~~~~Id~~~s---~eev~~~I~~~l~~  289 (303)
                      -                    ......-...+++..|...++..+..-.   ..+++|+++..   .-.|.+.|.+.|+.
T Consensus       173 W--------------------K~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~addK~~arl~v~~~il~~L~~  232 (493)
T TIGR03708       173 W--------------------RVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGEDDRYRSLTVGRTLLAAIRA  232 (493)
T ss_pred             c--------------------CCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence            1                    0111122223356666666665554322   26888998753   33455556666665


Q ss_pred             HHH
Q 022042          290 LLE  292 (303)
Q Consensus       290 ~l~  292 (303)
                      .+.
T Consensus       233 ~l~  235 (493)
T TIGR03708       233 RLA  235 (493)
T ss_pred             HHh
Confidence            553

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PF13173 AAA_14: AAA domain

Probab=97.96  E-value=0.00013  Score=57.49  Aligned_cols=114  Identities=18%  Similarity=0.310  Sum_probs=65.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC----CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYG----LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg----~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      ++++|.|+.|+||||+++.+++.+.    +.+++.++.-.....              .    .+  +...+.+....  
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~--------------~----~~--~~~~~~~~~~~--   60 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA--------------D----PD--LLEYFLELIKP--   60 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh--------------h----hh--hHHHHHHhhcc--
Confidence            4789999999999999999998875    677777655432110              0    00  11222222111  


Q ss_pred             CCCCcEEEcCC---CCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCC
Q 022042          161 SQENGWLLDGY---PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE  226 (303)
Q Consensus       161 ~~~~~~Vldg~---p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~  226 (303)
                       ....+++|.+   |......+.+.+.+  ++..|++..+......+   .......|+.......|.+
T Consensus        61 -~~~~i~iDEiq~~~~~~~~lk~l~d~~--~~~~ii~tgS~~~~l~~---~~~~~l~gr~~~~~l~Pls  123 (128)
T PF13173_consen   61 -GKKYIFIDEIQYLPDWEDALKFLVDNG--PNIKIILTGSSSSLLSK---DIAESLAGRVIEIELYPLS  123 (128)
T ss_pred             -CCcEEEEehhhhhccHHHHHHHHHHhc--cCceEEEEccchHHHhh---cccccCCCeEEEEEECCCC
Confidence             2466888974   33333344444433  67788888887666543   1223445665555554443

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.92  E-value=1e-05  Score=73.21  Aligned_cols=36  Identities=28%  Similarity=0.344  Sum_probs=32.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL  118 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l  118 (303)
                      .+++|+|+||+||||||+|..|+++++..+|+.|.+
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~   38 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM   38 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence            457899999999999999999999999999988863

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=97.88  E-value=5.5e-05  Score=64.26  Aligned_cols=114  Identities=19%  Similarity=0.249  Sum_probs=63.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh---C---CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHc
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY---G---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS  157 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l---g---~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~  157 (303)
                      |+.|+|+|-|.|||||.|+.|.+.|   +   ...|.-|+-+  .+......+..-          .+..+...+...+.
T Consensus         1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~desl--g~~~ns~y~~s~----------~EK~lRg~L~S~v~   68 (281)
T KOG3062|consen    1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESL--GIEKNSNYGDSQ----------AEKALRGKLRSAVD   68 (281)
T ss_pred             CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhc--CCCCcccccccH----------HHHHHHHHHHHHHH
Confidence            4689999999999999999999987   2   1222222211  001111111111          12234445555565


Q ss_pred             CCCCCCCcEEEcCCC--CCHH-HHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          158 QPDSQENGWLLDGYP--RSLS-QATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       158 ~~~~~~~~~Vldg~p--~~~~-~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      .....+..+|+|...  ..+. +.--..+....-.+|||..+|.+.+.+--.+|.
T Consensus        69 R~Lsk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~  123 (281)
T KOG3062|consen   69 RSLSKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSERE  123 (281)
T ss_pred             hhcccCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCC
Confidence            655667788888521  1100 000011122234579999999999988776664

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.88  E-value=4.3e-05  Score=61.06  Aligned_cols=24  Identities=29%  Similarity=0.482  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           86 KIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      +|+|+||+||||||+++.|++.+.
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCC
Confidence            378999999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=8.3e-05  Score=71.57  Aligned_cols=30  Identities=20%  Similarity=0.500  Sum_probs=27.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      =|+|.||||||||.+|+.||.++|++++++
T Consensus       225 GvLlHGPPGCGKT~lA~AiAgel~vPf~~i  254 (802)
T KOG0733|consen  225 GVLLHGPPGCGKTSLANAIAGELGVPFLSI  254 (802)
T ss_pred             ceeeeCCCCccHHHHHHHHhhhcCCceEee
Confidence            488999999999999999999999988765

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=97.86  E-value=0.00025  Score=71.14  Aligned_cols=39  Identities=18%  Similarity=0.254  Sum_probs=29.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC-----ceeehHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGL-----VHIAAGDLLRA  121 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~-----~~i~~d~l~~~  121 (303)
                      ...+|++.|.||+||||+++.|++.++.     .++..+.+-+.
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~  257 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRR  257 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhh
Confidence            3468999999999999999999998854     34444444443

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.81  E-value=1.4e-05  Score=65.64  Aligned_cols=37  Identities=30%  Similarity=0.531  Sum_probs=25.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHc
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA  125 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~  125 (303)
                      +|+|+|++|+||||+++.|++. |+.++  .+..+..+..
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~~   37 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIEE   37 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHHH
Confidence            4899999999999999999988 88877  5565555443

>PLN02840 tRNA dimethylallyltransferase

Probab=97.81  E-value=1.9e-05  Score=74.03  Aligned_cols=36  Identities=22%  Similarity=0.235  Sum_probs=31.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD  117 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~  117 (303)
                      .++++|+|.||+||||||++..|+++++..+|+.|.
T Consensus        19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds   54 (421)
T PLN02840         19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS   54 (421)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence            345689999999999999999999999988888774

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=97.77  E-value=3.7e-05  Score=65.84  Aligned_cols=40  Identities=30%  Similarity=0.326  Sum_probs=33.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCce-eehHHHHHHHHHc
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVH-IAAGDLLRAEIAA  125 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~-i~~d~l~~~~~~~  125 (303)
                      |+|+|+|.|||||||+++.+.+. |.++ +++++.+++.+..
T Consensus         1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l~~   41 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEILAI   41 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHHHH
Confidence            58999999999999999999665 5566 9999988887653

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.76  E-value=2.8e-05  Score=62.85  Aligned_cols=27  Identities=41%  Similarity=0.527  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      .+|.|+|+|+||+||||++..|++.+.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence            357999999999999999999998873

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.75  E-value=0.00022  Score=68.71  Aligned_cols=33  Identities=18%  Similarity=0.385  Sum_probs=28.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      .|+-|++.||||+|||.+|+.+|..+|.+++.+
T Consensus       258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l  290 (489)
T CHL00195        258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL  290 (489)
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            456789999999999999999999999876654

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=97.74  E-value=9.4e-05  Score=59.05  Aligned_cols=29  Identities=24%  Similarity=0.259  Sum_probs=25.8

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.+..+|+|+|.+||||||+|-.|.+.+
T Consensus        27 ~~qkGcviWiTGLSgSGKStlACaL~q~L   55 (207)
T KOG0635|consen   27 LKQKGCVIWITGLSGSGKSTLACALSQAL   55 (207)
T ss_pred             hcCCCcEEEEeccCCCCchhHHHHHHHHH
Confidence            35677899999999999999999998877

>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein

Probab=97.74  E-value=0.00014  Score=62.96  Aligned_cols=148  Identities=16%  Similarity=0.134  Sum_probs=74.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC---CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ  158 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg---~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~  158 (303)
                      ..|.+|+|.|..||||+.+.+.|.+.++   +.+.+.+.--.+                        +.-...+......
T Consensus        29 ~~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~e------------------------E~~~p~lwRfw~~   84 (228)
T PF03976_consen   29 GIPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDE------------------------ELRRPFLWRFWRA   84 (228)
T ss_dssp             HHEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HH------------------------HHTS-TTHHHHTT
T ss_pred             CCcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChh------------------------HcCCCcHHHHHHh
Confidence            3568999999999999999999998874   333333211111                        1111122223333


Q ss_pred             CCCCCCcEEEcC--C-----------------CCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042          159 PDSQENGWLLDG--Y-----------------PRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGK  216 (303)
Q Consensus       159 ~~~~~~~~Vldg--~-----------------p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~  216 (303)
                      ....|...|+|+  |                 .+...++..|++.   ....-+-+||+++.++..+|+.+|..++.+.-
T Consensus        85 lP~~G~I~if~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~w  164 (228)
T PF03976_consen   85 LPARGQIGIFDRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLKRW  164 (228)
T ss_dssp             S--TT-EEEEES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCCGG
T ss_pred             CCCCCEEEEEecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCccccc
Confidence            333344455553  1                 1112222223321   22234678999999999999998865443321


Q ss_pred             eecccCCCCCchHHHhhhccCCCCcHHH--HHHHHHHHHHHHHHHHHHh---hcceEEEcCCCC
Q 022042          217 IYHVKYSPPETDEIAARLTKRFDDTEEK--VKLRLKTHHHNVEAVLSLY---EDVTVEVNGSVN  275 (303)
Q Consensus       217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~--~~~r~~~~~~~~~~~~~~~---~~~~~~Id~~~s  275 (303)
                                            .-++..  ..+.+..|...++.++..-   ...+++|+++..
T Consensus       165 ----------------------kv~~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~dk  206 (228)
T PF03976_consen  165 ----------------------KVSPEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADDK  206 (228)
T ss_dssp             ----------------------G--HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SSH
T ss_pred             ----------------------cCCHHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCCH
Confidence                                  111221  2234566666655555432   236888998754

The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.00058  Score=66.42  Aligned_cols=34  Identities=18%  Similarity=0.437  Sum_probs=29.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      ..|+-|++.|||||||||+|+.||..-++.++++
T Consensus       466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv  499 (693)
T KOG0730|consen  466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV  499 (693)
T ss_pred             CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence            3456799999999999999999999987777665

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.62  E-value=4.7e-05  Score=68.20  Aligned_cols=32  Identities=25%  Similarity=0.287  Sum_probs=29.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGD  117 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~  117 (303)
                      +|+|+||+|||||+++..|++.++..+|++|.
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds   32 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDS   32 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence            47899999999999999999999999999875

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PLN02748 tRNA dimethylallyltransferase

Probab=97.61  E-value=5.5e-05  Score=72.07  Aligned_cols=36  Identities=17%  Similarity=0.232  Sum_probs=32.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD  117 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~  117 (303)
                      .++.+|+|+||+|||||+++..|+++++..+|+.|.
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds   55 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS   55 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence            345689999999999999999999999999999984

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=97.59  E-value=0.00069  Score=54.62  Aligned_cols=134  Identities=11%  Similarity=0.090  Sum_probs=74.5

Q ss_pred             hhhhcccCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CceeehHHHHHHHHHcCCcchHH--HHH-HHHcC---CCcChH
Q 022042           75 QVLASATVEPLKIMISGAPASGKGTQCELIKEKYG--LVHIAAGDLLRAEIAAGSENGKR--AKE-HMEKG---QLVPDE  146 (303)
Q Consensus        75 ~~~~~~~~~~~~I~I~G~pGSGKSTla~~La~~lg--~~~i~~d~l~~~~~~~~~~~~~~--i~~-~~~~g---~~~~~~  146 (303)
                      +..++...+..+|++-|.+-+|||++|..|.+-+.  +-+|-+|.++..........+.-  ... ...++   ..+...
T Consensus        14 ~~~~ag~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~g   93 (205)
T COG3896          14 LAAMAGMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPG   93 (205)
T ss_pred             HHHHcCCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeech
Confidence            44566677788999999999999999999988764  45566666655443321111110  000 00111   111111


Q ss_pred             HHHHH----HHHHHcCCCCCCCcEEEcCCCCCHHHHHH-HHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042          147 IVVTM----VKERLSQPDSQENGWLLDGYPRSLSQATA-LKKYGFQPDLFILLEVPEDTLVERVVGR  208 (303)
Q Consensus       147 ~~~~~----l~~~l~~~~~~~~~~Vldg~p~~~~~~~~-l~~~~~~pd~vI~L~~~~e~~~~Rl~~R  208 (303)
                      -+.+.    ....+.....++..+|.|.+-.+..+... +......+..++-+.||.|++.+|-..|
T Consensus        94 pi~e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr  160 (205)
T COG3896          94 PILELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRR  160 (205)
T ss_pred             hHHHHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhc
Confidence            11111    12222222223667888887655443322 2223334557888999999999887665

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.58  E-value=0.00076  Score=63.32  Aligned_cols=107  Identities=21%  Similarity=0.283  Sum_probs=56.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh----C--CceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY----G--LVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKER  155 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l----g--~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~  155 (303)
                      ++.+|+|+|++||||||++..|+..+    |  ..+++.| ..+...      ...+..+... +..+........+...
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D-t~R~aA------~eQLk~yAe~lgvp~~~~~~~~~l~~~  294 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD-NYRIAA------IEQLKRYADTMGMPFYPVKDIKKFKET  294 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc-chhhhH------HHHHHHHHHhcCCCeeehHHHHHHHHH
Confidence            45689999999999999999999765    2  2334444 333211      1122222222 1111111111233333


Q ss_pred             HcCCCCCCCcEEEc--CCC-CCHHHHHHHHHhC----C-CC-cEEEEEEcCH
Q 022042          156 LSQPDSQENGWLLD--GYP-RSLSQATALKKYG----F-QP-DLFILLEVPE  198 (303)
Q Consensus       156 l~~~~~~~~~~Vld--g~p-~~~~~~~~l~~~~----~-~p-d~vI~L~~~~  198 (303)
                      +...  ....+++|  |++ ++..+++.|.+..    . .+ ..++.|++..
T Consensus       295 l~~~--~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~  344 (432)
T PRK12724        295 LARD--GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS  344 (432)
T ss_pred             HHhC--CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence            4321  23669999  653 6677777766521    1 12 3455666554

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=5.4e-05  Score=67.70  Aligned_cols=26  Identities=27%  Similarity=0.669  Sum_probs=23.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      .+|.+.||||+|||++|+.||+++.+
T Consensus       178 RliLlhGPPGTGKTSLCKaLaQkLSI  203 (423)
T KOG0744|consen  178 RLILLHGPPGTGKTSLCKALAQKLSI  203 (423)
T ss_pred             eEEEEeCCCCCChhHHHHHHHHhhee
Confidence            47999999999999999999999854

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=97.56  E-value=0.0041  Score=50.41  Aligned_cols=29  Identities=21%  Similarity=0.252  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      ..++|.|.|+-.||||||++.|+..+|-.
T Consensus         7 F~K~VailG~ESsGKStLv~kLA~~fnt~   35 (187)
T COG3172           7 FVKTVAILGGESSGKSTLVNKLANIFNTT   35 (187)
T ss_pred             hheeeeeecCcccChHHHHHHHHHHhCCC
Confidence            45789999999999999999999999864

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.55  E-value=7e-05  Score=58.39  Aligned_cols=27  Identities=33%  Similarity=0.474  Sum_probs=23.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      ..++|.|++|+||||+++.|+..++..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            478899999999999999999988543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.53  E-value=8.9e-05  Score=59.03  Aligned_cols=27  Identities=26%  Similarity=0.455  Sum_probs=24.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           87 IMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      |+|.|+||+|||++++.|++.++..++
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~~   28 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPVI   28 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcceE
Confidence            679999999999999999999987654

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.53  E-value=0.00059  Score=58.41  Aligned_cols=70  Identities=20%  Similarity=0.277  Sum_probs=40.3

Q ss_pred             CCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042          223 SPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQ  293 (303)
Q Consensus       223 ~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~  293 (303)
                      .||......+||..|.-++++.+.+|++....+......-+.. -..+.+...+++...++...+..-..+
T Consensus       156 ~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~~~~~g~~-d~~~~ns~~lee~~kel~~~~~~~~~~  225 (231)
T KOG0707|consen  156 KPPSIKILEERLRARGTETEESLLKRLKSAEEEFEILENSGSF-DLVIVNSDRLEEAYKELEIFISSDDKE  225 (231)
T ss_pred             cCCcchhHHHHhhccCcchHHHHHHHHHhhhhhhccccCCccc-cceecCCCchhhhhhhhhhhhhHHHHh
Confidence            3444444444444555677888888888555555544432211 233445478888888887777554443

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.49  E-value=0.0001  Score=63.19  Aligned_cols=30  Identities=23%  Similarity=0.386  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      ..-+++.||||+||||+|+.||+.+|..+.
T Consensus        50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~   79 (233)
T PF05496_consen   50 LDHMLFYGPPGLGKTTLARIIANELGVNFK   79 (233)
T ss_dssp             --EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred             cceEEEECCCccchhHHHHHHHhccCCCeE
Confidence            346889999999999999999999986553

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.49  E-value=0.00045  Score=57.22  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      +++|+|++|||||++|..++...+.
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~~~   25 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAELGG   25 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCC
Confidence            3689999999999999999987653

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.48  E-value=0.0047  Score=61.03  Aligned_cols=28  Identities=14%  Similarity=0.236  Sum_probs=25.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      .+..++|+|++|+||||+++.|++.+++
T Consensus        37 LpHA~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         37 LHHAYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3456789999999999999999999987

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=97.47  E-value=0.00011  Score=68.63  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=29.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAG  116 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d  116 (303)
                      |..|+|.||||+|||++|+.|++.++.+++.++
T Consensus        47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd   79 (441)
T TIGR00390        47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   79 (441)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence            457999999999999999999999998887766

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.46  E-value=0.00015  Score=57.45  Aligned_cols=30  Identities=17%  Similarity=0.214  Sum_probs=26.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      ....+|+|.|..||||||+++.|++.+|..
T Consensus        20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            345689999999999999999999999863

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.44  E-value=0.00033  Score=62.86  Aligned_cols=36  Identities=17%  Similarity=0.242  Sum_probs=32.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL  118 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l  118 (303)
                      +-++|+|+|+.|||||-|+--||.+|+..+|+.|.+
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkm   41 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKM   41 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccce
Confidence            457999999999999999999999999999988743

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.43  E-value=0.00021  Score=55.92  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...++|.|++|+|||++++.+++.+
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHh
Confidence            3478899999999999999999987

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.43  E-value=0.00017  Score=64.92  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=33.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL  118 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l  118 (303)
                      .+.+|+|+||.+||||-+|-.||+++|..+||+|.+
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm   37 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM   37 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence            467899999999999999999999999999999854

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=97.43  E-value=0.012  Score=56.71  Aligned_cols=152  Identities=11%  Similarity=0.102  Sum_probs=84.8

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      ...+.+|++.|..+|||....++|.+.++-..+.+-.+                     +.+...+.-...+........
T Consensus       296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~---------------------~~Pt~~E~~~~~lwRf~~~lP  354 (493)
T TIGR03708       296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPI---------------------AAPTDEEKAQHYLWRFWRHIP  354 (493)
T ss_pred             CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeC---------------------CCcCHHHHcCcHHHHHHHhCC
Confidence            56789999999999999999999999885433322110                     111111222222233333333


Q ss_pred             CCCCcEEEcC-------------CCC------CHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCcee
Q 022042          161 SQENGWLLDG-------------YPR------SLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIY  218 (303)
Q Consensus       161 ~~~~~~Vldg-------------~p~------~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~  218 (303)
                      ..|...|+|.             +-.      ...++..|++   .....-+-+||+++.++..+|+.+|..+|.+.   
T Consensus       355 ~~G~i~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p~k~---  431 (493)
T TIGR03708       355 RRGRITIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTPFKR---  431 (493)
T ss_pred             CCCeEEEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCCccC---
Confidence            3344444443             211      1122222222   12233467899999999999999997655322   


Q ss_pred             cccCCCCCchHHHhhhccCCCCcHHH--HHHHHHHHHHHHHHHHHHhh---cceEEEcCCCC
Q 022042          219 HVKYSPPETDEIAARLTKRFDDTEEK--VKLRLKTHHHNVEAVLSLYE---DVTVEVNGSVN  275 (303)
Q Consensus       219 ~~~~~~p~~~~i~~rL~~r~~d~~e~--~~~r~~~~~~~~~~~~~~~~---~~~~~Id~~~s  275 (303)
                                         ...+++.  ..+++..|...++..+..-.   ..+++|.++.-
T Consensus       432 -------------------WK~t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~dK  474 (493)
T TIGR03708       432 -------------------YKITDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEANDK  474 (493)
T ss_pred             -------------------CcCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCCh
Confidence                               1222233  33456667666665554322   26788888753

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.42  E-value=0.00013  Score=66.99  Aligned_cols=27  Identities=19%  Similarity=0.235  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      .++++|.|||||||||+|+.|++.++.
T Consensus        78 r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       78 KQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            468999999999999999999998854

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PLN02796 D-glycerate 3-kinase

Probab=97.42  E-value=0.00012  Score=66.81  Aligned_cols=38  Identities=24%  Similarity=0.311  Sum_probs=31.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLL  119 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~  119 (303)
                      ..|.+|+|.|++||||||+++.|...+.     ...|++|++.
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY  140 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY  140 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence            4678999999999999999999998874     3456776654

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=97.42  E-value=0.0041  Score=62.30  Aligned_cols=28  Identities=14%  Similarity=0.220  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      +..++|+|++|+||||+++.|++.+++.
T Consensus        38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe   65 (830)
T PRK07003         38 HHAYLFTGTRGVGKTTLSRIFAKALNCE   65 (830)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            4567899999999999999999999864

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=97.41  E-value=0.0018  Score=52.84  Aligned_cols=32  Identities=16%  Similarity=0.297  Sum_probs=26.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhC-CceeehHHH
Q 022042           87 IMISGAPASGKGTQCELIKEKYG-LVHIAAGDL  118 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~lg-~~~i~~d~l  118 (303)
                      |+=++.+||||||++..|++-|| +-|+--|++
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI   34 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI   34 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence            44578999999999999999999 888855554

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.38  E-value=0.00016  Score=67.77  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=29.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD  117 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~  117 (303)
                      |..|+|+||+|+||||+|+.|++.++.+++.+|.
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~   83 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence            4689999999999999999999999887776653

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.34  E-value=0.00021  Score=65.66  Aligned_cols=38  Identities=42%  Similarity=0.626  Sum_probs=31.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcee--ehHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHI--AAGDLL  119 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i--~~d~l~  119 (303)
                      +.|..++|.||||||||.+|+.+++++|+.+|  +..+++
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~  185 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE  185 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh
Confidence            55788999999999999999999999987654  444443

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=97.34  E-value=0.00068  Score=58.03  Aligned_cols=25  Identities=20%  Similarity=0.388  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ..+++.|+||+||||+|..+.++++
T Consensus       120 ~l~glag~pGtgkst~~a~v~~aWp  144 (323)
T KOG2702|consen  120 ELTGLAGRPGTGKSTRIAAVDNAWP  144 (323)
T ss_pred             heeeeecCCCCcchhHHHHHHhhcc
Confidence            4799999999999999999998654

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.32  E-value=0.00019  Score=67.07  Aligned_cols=37  Identities=22%  Similarity=0.263  Sum_probs=30.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLL  119 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~  119 (303)
                      +|.+|+|.|+.||||||+++.|...+.     ...|+.|++.
T Consensus       211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            689999999999999999999987662     4567777665

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.28  E-value=0.00027  Score=58.50  Aligned_cols=23  Identities=35%  Similarity=0.562  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .|+|+|.||+||||+.+.+.+.+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            47899999999999999999988

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.27  E-value=0.00031  Score=61.38  Aligned_cols=28  Identities=29%  Similarity=0.385  Sum_probs=23.4

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+..+|+|+|+||+||||+...|...|
T Consensus        26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~   53 (266)
T PF03308_consen   26 TGRAHVIGITGPPGAGKSTLIDALIREL   53 (266)
T ss_dssp             TT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence            3456799999999999999999999887

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.00087  Score=63.83  Aligned_cols=34  Identities=21%  Similarity=0.376  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      +-|+=|+++||||+|||-||+.+|-+-|.+++.+
T Consensus       335 KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~  368 (752)
T KOG0734|consen  335 KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA  368 (752)
T ss_pred             cCCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence            3456699999999999999999999999888764

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=97.25  E-value=0.00036  Score=62.88  Aligned_cols=35  Identities=20%  Similarity=0.151  Sum_probs=30.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL  118 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l  118 (303)
                      .+++|+|+||.|||||.+|-.||++ +..+||+|.+
T Consensus         3 ~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~   37 (300)
T PRK14729          3 ENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI   37 (300)
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence            3458999999999999999999999 4589998854

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.25  E-value=0.015  Score=56.93  Aligned_cols=27  Identities=19%  Similarity=0.233  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      +..++|+|++|+||||+|+.|++.+++
T Consensus        38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         38 HHAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346789999999999999999999875

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.23  E-value=0.00036  Score=54.47  Aligned_cols=31  Identities=23%  Similarity=0.218  Sum_probs=25.7

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      .+...+|++.|.-||||||+++.|++.+|..
T Consensus        12 l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen   12 LKPGDVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             HSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            3556799999999999999999999999863

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.23  E-value=0.00028  Score=64.11  Aligned_cols=30  Identities=23%  Similarity=0.409  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      ..|+|.|+||+||||+++.|++.+|.+++.
T Consensus        65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~r   94 (327)
T TIGR01650        65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVR   94 (327)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence            468999999999999999999999987653

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.22  E-value=0.00039  Score=54.65  Aligned_cols=25  Identities=28%  Similarity=0.591  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...++|.|++|+||||+++.+++.+
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999999987

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.22  E-value=0.00036  Score=57.80  Aligned_cols=28  Identities=14%  Similarity=0.032  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ..+.+|.|+|++||||||+++.|...+.
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence            3466899999999999999999998773

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.22  E-value=0.011  Score=54.14  Aligned_cols=25  Identities=20%  Similarity=0.437  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ..++|.||+|+||||+++.+++.+.
T Consensus        37 ~~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         37 PHLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhc
Confidence            3578999999999999999999873

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.21  E-value=0.00028  Score=56.44  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      |++|.|.|+.|||||||++.|...
T Consensus         1 MkrimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    1 MKRIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             CceEEEECCCCCCHHHHHHHHcCC
Confidence            568999999999999999999653

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PHA02244 ATPase-like protein

Probab=97.20  E-value=0.00069  Score=62.52  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=29.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLL  119 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~  119 (303)
                      .-|+|.|++|+|||++|+.|+..+|.+++.+..+.
T Consensus       120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~  154 (383)
T PHA02244        120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM  154 (383)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence            35788999999999999999999998888775443

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.19  E-value=0.00039  Score=63.72  Aligned_cols=30  Identities=17%  Similarity=0.263  Sum_probs=27.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      ...|+|.|++|+||||+++.|++.+|..++
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v  191 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA  191 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence            468999999999999999999999998775

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.0012  Score=60.19  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=28.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      .++-|.+.||||+|||-+|++++++-|..+|++
T Consensus       126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv  158 (386)
T KOG0737|consen  126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINV  158 (386)
T ss_pred             CCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence            446799999999999999999999998877755

>PRK09087 hypothetical protein; Validated

Probab=97.18  E-value=0.00084  Score=58.30  Aligned_cols=37  Identities=19%  Similarity=0.288  Sum_probs=31.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRA  121 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~  121 (303)
                      ..++|.|++|||||++++.+++..+..+++.+++..+
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~   81 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSD   81 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchH
Confidence            4589999999999999999999999889988654433

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.18  E-value=0.00038  Score=61.76  Aligned_cols=25  Identities=24%  Similarity=0.589  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...++|.||||+||||+|+.+++.+
T Consensus        42 ~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        42 VLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999999875

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.17  E-value=0.019  Score=55.33  Aligned_cols=29  Identities=28%  Similarity=0.344  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      .+.-++++|++|+||||+|+.||+.+++.
T Consensus        34 i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~   62 (491)
T PRK14964         34 IPQSILLVGASGVGKTTCARIISLCLNCS   62 (491)
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence            34578899999999999999999988763

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.16  E-value=0.017  Score=57.22  Aligned_cols=28  Identities=14%  Similarity=0.214  Sum_probs=25.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      +..++|+||+|+||||+|+.||+.+++.
T Consensus        37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~   64 (702)
T PRK14960         37 HHAYLFTGTRGVGKTTIARILAKCLNCE   64 (702)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            4578899999999999999999999864

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.13  E-value=0.00046  Score=61.32  Aligned_cols=29  Identities=17%  Similarity=0.235  Sum_probs=25.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      .-|+|.|+||+|||++|+.|++.+|.+++
T Consensus        22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~   50 (262)
T TIGR02640        22 YPVHLRGPAGTGKTTLAMHVARKRDRPVM   50 (262)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence            35779999999999999999999987665

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.13  E-value=0.00053  Score=66.52  Aligned_cols=31  Identities=16%  Similarity=0.374  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      ..+++|+||+||||||..+.|++++|+.++.
T Consensus        45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~E   75 (519)
T PF03215_consen   45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQE   75 (519)
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence            3588999999999999999999999987653

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=97.12  E-value=0.0026  Score=58.66  Aligned_cols=108  Identities=19%  Similarity=0.267  Sum_probs=68.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      ...+++.|+.|||||++...|.+. |..++++..+.+.   .++.+|...     ..++ .-..+...+...+..... .
T Consensus       141 ~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aeh---rGS~fG~~~-----~~qp-sQ~~Fe~~l~~~l~~~~~-~  209 (345)
T PRK11784        141 FPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANH---RGSSFGRLG-----GPQP-SQKDFENLLAEALLKLDP-A  209 (345)
T ss_pred             CceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhh---ccccccCCC-----CCCc-chHHHHHHHHHHHHcCCC-C
Confidence            356889999999999999999764 7788988776643   233343211     1111 122355556666666554 4


Q ss_pred             CcEEEcC---------CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          164 NGWLLDG---------YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       164 ~~~Vldg---------~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      +.+++++         .|..+     +..+.  -.-+|+|++|.+.+++|+.+-.
T Consensus       210 ~~i~vE~Es~~IG~~~lP~~l-----~~~m~--~~~~v~i~~~~e~Rv~~l~~~Y  257 (345)
T PRK11784        210 RPIVVEDESRRIGRVHLPEAL-----YEAMQ--QAPIVVVEAPLEERVERLLEDY  257 (345)
T ss_pred             CeEEEEeccccccCccCCHHH-----HHHHh--hCCEEEEECCHHHHHHHHHHHh
Confidence            5677764         33222     22222  1248899999999999998765

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.11  E-value=0.00039  Score=52.98  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhC
Q 022042           87 IMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      |+|.|++|+|||++++.|++.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999988753

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>COG3911 Predicted ATPase [General function prediction only]

Probab=97.10  E-value=0.00051  Score=54.85  Aligned_cols=30  Identities=20%  Similarity=0.499  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      ++++++|+|.||+||||+...|++. |+..+
T Consensus         8 R~~~fIltGgpGaGKTtLL~aLa~~-Gfatv   37 (183)
T COG3911           8 RHKRFILTGGPGAGKTTLLAALARA-GFATV   37 (183)
T ss_pred             cceEEEEeCCCCCcHHHHHHHHHHc-Cceee
Confidence            3468999999999999999999875 77654

>PF13245 AAA_19: Part of AAA domain

Probab=97.09  E-value=0.00062  Score=48.51  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=18.2

Q ss_pred             CeEEEEEcCCCCCHH-HHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKG-TQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKS-Tla~~La~~l  108 (303)
                      ..+++|.|+|||||| |+++.++..+
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            346778999999999 5555555544

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.09  E-value=0.023  Score=55.14  Aligned_cols=28  Identities=25%  Similarity=0.230  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      .+..++|+||||+||||+|+.|++.+++
T Consensus        35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         35 LGHAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            3456789999999999999999999864

>PF05729 NACHT: NACHT domain

Probab=97.09  E-value=0.00049  Score=55.83  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +++|.|.+|+||||+++.++..+
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHH
Confidence            68899999999999999999877

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.09  E-value=0.00055  Score=63.08  Aligned_cols=39  Identities=23%  Similarity=0.232  Sum_probs=29.7

Q ss_pred             hhcccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           77 LASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        77 ~~~~~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      .+.......-.++-||||+||||+|+.|++..+..+.-+
T Consensus        41 r~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~   79 (436)
T COG2256          41 RAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL   79 (436)
T ss_pred             HHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe
Confidence            333444444567899999999999999999998766544

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.06  E-value=0.00058  Score=64.20  Aligned_cols=32  Identities=19%  Similarity=0.401  Sum_probs=27.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      .|.-|+|.||||+|||++|+.++..++..++.
T Consensus       164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~  195 (389)
T PRK03992        164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIR  195 (389)
T ss_pred             CCCceEEECCCCCChHHHHHHHHHHhCCCEEE
Confidence            34569999999999999999999999865543

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.0025  Score=61.82  Aligned_cols=33  Identities=18%  Similarity=0.332  Sum_probs=28.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      .+..|++.||||+|||.+|+.++..++..+++.
T Consensus       275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v  307 (494)
T COG0464         275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISV  307 (494)
T ss_pred             CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe
Confidence            345799999999999999999999887776654

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.06  E-value=0.0036  Score=53.78  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Q 022042           87 IMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~l  108 (303)
                      -+|+|||||||||.|.-..+-|
T Consensus         5 qvVIGPPgSGKsTYc~g~~~fl   26 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQFL   26 (290)
T ss_pred             eEEEcCCCCCccchhhhHHHHH
Confidence            4699999999999997776654

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.06  E-value=0.021  Score=56.44  Aligned_cols=29  Identities=14%  Similarity=0.279  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      .+..++|+|++|+||||+++.|++.+++.
T Consensus        37 ~~hayLf~Gp~G~GKtt~A~~lak~l~c~   65 (576)
T PRK14965         37 VAHAFLFTGARGVGKTSTARILAKALNCE   65 (576)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence            45678899999999999999999998764

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=0.007  Score=55.77  Aligned_cols=31  Identities=16%  Similarity=0.392  Sum_probs=27.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      +=|++.||||+|||-||+.++.+.|-.++++
T Consensus       246 kgvLm~GPPGTGKTlLAKAvATEc~tTFFNV  276 (491)
T KOG0738|consen  246 KGVLMVGPPGTGKTLLAKAVATECGTTFFNV  276 (491)
T ss_pred             ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence            4589999999999999999999998777665

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.04  E-value=0.00059  Score=60.63  Aligned_cols=31  Identities=29%  Similarity=0.346  Sum_probs=27.0

Q ss_pred             hcccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           78 ASATVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        78 ~~~~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+...++.+|+|+|+||+||||+...|..+|
T Consensus        45 ~p~tG~a~viGITG~PGaGKSTli~~L~~~l   75 (323)
T COG1703          45 YPRTGNAHVIGITGVPGAGKSTLIEALGREL   75 (323)
T ss_pred             hhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence            4445567899999999999999999999988

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.04  E-value=0.033  Score=55.30  Aligned_cols=29  Identities=14%  Similarity=0.212  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      .+..++|+|++|+||||+++.|++.+++.
T Consensus        37 l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~   65 (618)
T PRK14951         37 LHHAYLFTGTRGVGKTTVSRILAKSLNCQ   65 (618)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            34578899999999999999999999863

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.03  E-value=0.0013  Score=64.81  Aligned_cols=31  Identities=23%  Similarity=0.426  Sum_probs=28.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      ++.+++||||.||||||+.+|++-||.++.+
T Consensus       327 KilLL~GppGlGKTTLAHViAkqaGYsVvEI  357 (877)
T KOG1969|consen  327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEI  357 (877)
T ss_pred             ceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence            6889999999999999999999999988865

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.03  E-value=0.00042  Score=60.65  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=18.7

Q ss_pred             EEcCCCCCHHHHHHHHHHHhC
Q 022042           89 ISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        89 I~G~pGSGKSTla~~La~~lg  109 (303)
                      |+||+||||||+|+.+.+.+.
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~   21 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLE   21 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999874

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.03  E-value=0.00069  Score=62.02  Aligned_cols=28  Identities=36%  Similarity=0.461  Sum_probs=25.0

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..++.+|.|+|+|||||||++..|...+
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999988776

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=97.01  E-value=0.0006  Score=64.38  Aligned_cols=32  Identities=19%  Similarity=0.257  Sum_probs=27.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAG  116 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d  116 (303)
                      ..|+|.||||+|||++|+.|++.++.+++.++
T Consensus       109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id  140 (412)
T PRK05342        109 SNILLIGPTGSGKTLLAQTLARILDVPFAIAD  140 (412)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence            46889999999999999999999987776554

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.01  E-value=0.02  Score=58.56  Aligned_cols=29  Identities=14%  Similarity=0.179  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      -+..++|+|++|+||||+|+.|++.+++.
T Consensus        37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         37 LHHAYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence            34567899999999999999999999764

>CHL00181 cbbX CbbX; Provisional

Probab=97.00  E-value=0.0012  Score=59.50  Aligned_cols=25  Identities=24%  Similarity=0.426  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +..++|.|+||+||||+|+.+++.+
T Consensus        59 ~~~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         59 GLHMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999999875

>PHA03134 thymidine kinase; Provisional

Probab=96.99  E-value=0.076  Score=48.42  Aligned_cols=25  Identities=24%  Similarity=0.385  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .-.+|.|.|+.|.||||.++.|+..
T Consensus        12 ~~~rvYlDG~~GvGKTT~~~~l~~~   36 (340)
T PHA03134         12 RIVRIYLDGAYGIGKSTTGRVMASA   36 (340)
T ss_pred             cEEEEEEeCCCcCCHHHHHHHHHHh
Confidence            3468999999999999999999864

>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2

Probab=96.99  E-value=0.0002  Score=57.82  Aligned_cols=24  Identities=38%  Similarity=0.605  Sum_probs=19.3

Q ss_pred             CC-CcEEEEEEcCHHHHHHHHhcCC
Q 022042          186 FQ-PDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       186 ~~-pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      .. ||++|||++|++++++|+.+|+
T Consensus        65 ~~~pdl~IYL~~~~e~~~~RI~kRg   89 (146)
T PF01712_consen   65 PKSPDLIIYLDASPETCLERIKKRG   89 (146)
T ss_dssp             CHH-SEEEEEE--HHHHHHHHHHCT
T ss_pred             hccCCeEEEEeCCHHHHHHHHHHhC
Confidence            45 9999999999999999999995

7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=96.96  E-value=0.00044  Score=54.12  Aligned_cols=27  Identities=26%  Similarity=0.533  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           87 IMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      |+|.|+||.||||+++.||+.+|..+.
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~~f~   28 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGLSFK   28 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred             EeeECCCccHHHHHHHHHHHHcCCcee
Confidence            679999999999999999999987654

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=96.96  E-value=0.017  Score=59.23  Aligned_cols=30  Identities=17%  Similarity=0.261  Sum_probs=25.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      ..+.-++|.|++|+||||+++.|++.|++.
T Consensus        35 ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~   64 (824)
T PRK07764         35 RINHAYLFSGPRGCGKTSSARILARSLNCV   64 (824)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence            334568899999999999999999999864

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.95  E-value=0.00093  Score=62.23  Aligned_cols=32  Identities=19%  Similarity=0.407  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      |.-|+|.||||+|||++++.++..++..++.+
T Consensus       156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v  187 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV  187 (364)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence            55699999999999999999999998766543

Many proteins may score above the trusted cutoff because an internal

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.95  E-value=0.0022  Score=56.08  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAG  116 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d  116 (303)
                      .-.++|.|+||||||++|..++...   |  ..+++.+
T Consensus        21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e   58 (237)
T TIGR03877        21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE   58 (237)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence            4589999999999999998765432   3  4556554

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>TIGR00101 ureG urease accessory protein UreG

Probab=96.95  E-value=0.00087  Score=57.02  Aligned_cols=25  Identities=36%  Similarity=0.523  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      |..|+|+|++||||||+.+.|.+.+
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l   25 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRAL   25 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhh
Confidence            5689999999999999999998875

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.95  E-value=0.0053  Score=62.50  Aligned_cols=33  Identities=24%  Similarity=0.446  Sum_probs=28.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      .+.-|+|.||||||||++|+.|+..++..++.+
T Consensus       486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v  518 (733)
T TIGR01243       486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAV  518 (733)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence            345689999999999999999999998776654

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.93  E-value=0.00095  Score=62.80  Aligned_cols=33  Identities=18%  Similarity=0.375  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      .|.-|+|.||||+|||++++.++..++..++..
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i  210 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV  210 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence            356799999999999999999999998766544

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.93  E-value=0.0009  Score=56.79  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      |.+|++.||+|+||||.+-.||.++
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~   25 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARL   25 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHH
Confidence            5789999999999999999999877

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK04195 replication factor C large subunit; Provisional

Probab=96.93  E-value=0.00085  Score=64.90  Aligned_cols=32  Identities=22%  Similarity=0.440  Sum_probs=28.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      +..++|.||||+||||+++.|++.+|+.++.+
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel   70 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL   70 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            45788999999999999999999999877654

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.0096  Score=53.12  Aligned_cols=38  Identities=18%  Similarity=0.345  Sum_probs=30.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCce--eehHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVH--IAAGDLLRAE  122 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~--i~~d~l~~~~  122 (303)
                      .=|++.||||+|||-||+..|.+-|-.+  |+..+++-+.
T Consensus       167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKW  206 (439)
T KOG0739|consen  167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW  206 (439)
T ss_pred             eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHH
Confidence            3599999999999999999999887544  4556666553

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=96.91  E-value=0.001  Score=54.51  Aligned_cols=25  Identities=28%  Similarity=0.151  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      |++|.|+|++||||||+++.|...+
T Consensus         1 m~vi~i~G~~gsGKTTli~~L~~~l   25 (159)
T cd03116           1 MKVIGFVGYSGSGKTTLLEKLIPAL   25 (159)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999987

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.91  E-value=0.00093  Score=53.53  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ++|.|+|+.+|||||+++.|.+.+
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999998877

>PRK13695 putative NTPase; Provisional

Probab=96.90  E-value=0.00093  Score=55.40  Aligned_cols=24  Identities=42%  Similarity=0.498  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      |+|+|+|++|+||||+++.|+..+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            579999999999999999987765

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=96.89  E-value=0.0012  Score=59.83  Aligned_cols=29  Identities=24%  Similarity=0.424  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCce
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVH  112 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~  112 (303)
                      +..++|+||||+|||++++.+++.++...
T Consensus        30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~   58 (305)
T TIGR00635        30 LDHLLLYGPPGLGKTTLAHIIANEMGVNL   58 (305)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            34688999999999999999999987543

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=96.89  E-value=0.00091  Score=62.99  Aligned_cols=31  Identities=19%  Similarity=0.267  Sum_probs=27.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      ..|+|.||||+|||++|+.|++.++.+++..
T Consensus       117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~  147 (413)
T TIGR00382       117 SNILLIGPTGSGKTLLAQTLARILNVPFAIA  147 (413)
T ss_pred             ceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence            3789999999999999999999998776543

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.88  E-value=0.0015  Score=62.03  Aligned_cols=26  Identities=31%  Similarity=0.523  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .|.+|+++|++|+||||++..|+..|
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L  119 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYF  119 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            46799999999999999999999877

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=96.88  E-value=0.0074  Score=59.39  Aligned_cols=38  Identities=18%  Similarity=0.241  Sum_probs=30.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh-----C--CceeehHHHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKEKY-----G--LVHIAAGDLLRAEI  123 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l-----g--~~~i~~d~l~~~~~  123 (303)
                      .++|.|++|+|||.|++.++..+     |  +.+++..+++.+..
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~  360 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI  360 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH
Confidence            48999999999999999998865     2  36788877775543

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.001  Score=65.42  Aligned_cols=38  Identities=24%  Similarity=0.402  Sum_probs=31.1

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCC--ceeehHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGL--VHIAAGDL  118 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~--~~i~~d~l  118 (303)
                      ..+.+++|+.||||.|||++++.+|+.+|-  ..++++-+
T Consensus       347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGv  386 (782)
T COG0466         347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGV  386 (782)
T ss_pred             cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCcc
Confidence            345689999999999999999999999975  44555544

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.87  E-value=0.00091  Score=56.89  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=20.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIK  105 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La  105 (303)
                      .+.-+++|+||+||||||+.+.|.
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN   49 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLN   49 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999999999884

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.0028  Score=63.35  Aligned_cols=35  Identities=20%  Similarity=0.396  Sum_probs=30.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAG  116 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d  116 (303)
                      +-|.=++|+||||+|||-||+.+|.+-|++++++.
T Consensus       342 KiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svS  376 (774)
T KOG0731|consen  342 KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVS  376 (774)
T ss_pred             cCcCceEEECCCCCcHHHHHHHHhcccCCceeeec
Confidence            34556899999999999999999999999988763

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.85  E-value=0.00092  Score=54.71  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +-.|.|+||+||||||+.+.++.-
T Consensus        29 Ge~iaitGPSG~GKStllk~va~L   52 (223)
T COG4619          29 GEFIAITGPSGCGKSTLLKIVASL   52 (223)
T ss_pred             CceEEEeCCCCccHHHHHHHHHhc
Confidence            458899999999999999999864

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.84  E-value=0.0011  Score=56.41  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           86 KIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      +|+|+||+||||||+...|...+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            688999999999999999888774

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PHA03135 thymidine kinase; Provisional

Probab=96.84  E-value=0.031  Score=50.95  Aligned_cols=24  Identities=13%  Similarity=0.310  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      -.+|.|.|+.|+||||+++.|++.
T Consensus        10 ~~rIYlDG~~GvGKTT~~~~l~~~   33 (343)
T PHA03135         10 LIRVYLDGPFGIGKTSMLNEMPDH   33 (343)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHh
Confidence            358999999999999999999885

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=96.84  E-value=0.00089  Score=62.57  Aligned_cols=23  Identities=43%  Similarity=0.733  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      =|+|.|+||+||||+|+.||+.|
T Consensus       265 GILIAG~PGaGKsTFaqAlAefy  287 (604)
T COG1855         265 GILIAGAPGAGKSTFAQALAEFY  287 (604)
T ss_pred             ceEEecCCCCChhHHHHHHHHHH
Confidence            48899999999999999999988

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.83  E-value=0.011  Score=54.33  Aligned_cols=113  Identities=19%  Similarity=0.255  Sum_probs=62.2

Q ss_pred             hhcccCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCc-eeehHHHHH---------HHHHcCCcchHHHHHHHHcCCCc
Q 022042           77 LASATVEPLKIMISGAPASGKGTQCELIKEKY---GLV-HIAAGDLLR---------AEIAAGSENGKRAKEHMEKGQLV  143 (303)
Q Consensus        77 ~~~~~~~~~~I~I~G~pGSGKSTla~~La~~l---g~~-~i~~d~l~~---------~~~~~~~~~~~~i~~~~~~g~~~  143 (303)
                      +.+...+|-+|.+.|.-|+||||.|-.||-.|   |+. .+-..|.+|         .....+-++.       ..+...
T Consensus        94 ~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~y-------gsyte~  166 (483)
T KOG0780|consen   94 LQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFY-------GSYTEA  166 (483)
T ss_pred             cccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeE-------eccccc
Confidence            34455677899999999999999999999887   442 222223332         2222111111       111111


Q ss_pred             ChHHHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHH-----hCCCCcEEE-EEEcCH
Q 022042          144 PDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKK-----YGFQPDLFI-LLEVPE  198 (303)
Q Consensus       144 ~~~~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~-----~~~~pd~vI-~L~~~~  198 (303)
                      ....+...=.++..+..+  .-+|+|--.|...+...|++     ....||.+| .+|++.
T Consensus       167 dpv~ia~egv~~fKke~f--dvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi  225 (483)
T KOG0780|consen  167 DPVKIASEGVDRFKKENF--DVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI  225 (483)
T ss_pred             chHHHHHHHHHHHHhcCC--cEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence            122222222333333332  45777876677666666655     356788765 456664

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.83  E-value=0.0014  Score=49.90  Aligned_cols=22  Identities=18%  Similarity=0.297  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIK  105 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La  105 (303)
                      ..+++|.|++||||||+++.|.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            4689999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK04328 hypothetical protein; Provisional

Probab=96.83  E-value=0.003  Score=55.70  Aligned_cols=33  Identities=24%  Similarity=0.279  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAG  116 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d  116 (303)
                      .-.++|.|+||||||++|..++...   |  ..+++.+
T Consensus        23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e   60 (249)
T PRK04328         23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE   60 (249)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence            3488999999999999998876542   2  3556653

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.82  E-value=0.0015  Score=56.33  Aligned_cols=38  Identities=13%  Similarity=0.099  Sum_probs=29.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLL  119 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~  119 (303)
                      ..+..|+|.|++|+|||++++.+++...     +.+++..++.
T Consensus        36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~   78 (226)
T TIGR03420        36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA   78 (226)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence            3456899999999999999999998752     4456665554

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.82  E-value=0.0011  Score=54.98  Aligned_cols=28  Identities=18%  Similarity=0.437  Sum_probs=18.8

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...+..++|+|++|+|||++.+.+.+.+
T Consensus        21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~   48 (185)
T PF13191_consen   21 SGSPRNLLLTGESGSGKTSLLRALLDRL   48 (185)
T ss_dssp             S-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3455789999999999999999888776

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=96.82  E-value=0.0013  Score=60.30  Aligned_cols=29  Identities=24%  Similarity=0.430  Sum_probs=25.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCce
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVH  112 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~  112 (303)
                      +..++|.||||+||||+|+.+++.++..+
T Consensus        51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~   79 (328)
T PRK00080         51 LDHVLLYGPPGLGKTTLANIIANEMGVNI   79 (328)
T ss_pred             CCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence            45688999999999999999999998654

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.81  E-value=0.0013  Score=54.96  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh----CCceeehH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY----GLVHIAAG  116 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l----g~~~i~~d  116 (303)
                      +..|.|.||||||||++...+.+.+    .+.+|.-|
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~D   49 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGD   49 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEece
Confidence            3789999999999999987766655    55555444

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.80  E-value=0.0013  Score=59.06  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .-++|.|+||+||||+|+.+++.+
T Consensus        59 ~~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        59 LHMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHH
Confidence            368899999999999998888765

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=96.80  E-value=0.056  Score=53.25  Aligned_cols=30  Identities=17%  Similarity=0.153  Sum_probs=25.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      ..+..++|+|++|+||||+|+.|++.+++.
T Consensus        36 ~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~   65 (563)
T PRK06647         36 KIANAYIFSGPRGVGKTSSARAFARCLNCV   65 (563)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence            345678899999999999999999998763

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.80  E-value=0.0018  Score=56.90  Aligned_cols=41  Identities=22%  Similarity=0.276  Sum_probs=33.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAE  122 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~~~  122 (303)
                      .+|.+|++.|..||||||++++|-.++.     ..+|++|-.+++.
T Consensus        17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~v   62 (366)
T KOG1532|consen   17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNV   62 (366)
T ss_pred             cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcC
Confidence            4577999999999999999999988772     3567887666654

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.79  E-value=0.0013  Score=62.95  Aligned_cols=30  Identities=20%  Similarity=0.469  Sum_probs=27.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      ..+.+|+||+||||||..+.|++.+|+.++
T Consensus       110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~  139 (634)
T KOG1970|consen  110 SRILLLTGPSGCGKSTTVKVLSKELGYQLI  139 (634)
T ss_pred             ceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence            358999999999999999999999998765

>PRK10646 ADP-binding protein; Provisional

Probab=96.79  E-value=0.0018  Score=52.46  Aligned_cols=29  Identities=21%  Similarity=0.157  Sum_probs=26.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      +...+|++.|.-|+||||+++.|++.+|.
T Consensus        26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         26 DGATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            33468999999999999999999999986

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=96.79  E-value=0.03  Score=55.79  Aligned_cols=28  Identities=21%  Similarity=0.256  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      +..++|+|++|+||||+|+.|++.+++.
T Consensus        38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c~   65 (647)
T PRK07994         38 HHAYLFSGTRGVGKTTIARLLAKGLNCE   65 (647)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence            4457899999999999999999999874

>PTZ00202 tuzin; Provisional

Probab=96.78  E-value=0.0054  Score=57.88  Aligned_cols=28  Identities=25%  Similarity=0.482  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      +.+++|+|++|+||||+++.+...++..
T Consensus       286 privvLtG~~G~GKTTLlR~~~~~l~~~  313 (550)
T PTZ00202        286 PRIVVFTGFRGCGKSSLCRSAVRKEGMP  313 (550)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhcCCce
Confidence            4589999999999999999999888753

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.78  E-value=0.0013  Score=63.82  Aligned_cols=32  Identities=19%  Similarity=0.455  Sum_probs=27.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      +.-++|.||||+|||++++.|+...+.+++.+
T Consensus        88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i  119 (495)
T TIGR01241        88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI  119 (495)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence            44688999999999999999999998776654

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.78  E-value=0.0017  Score=53.83  Aligned_cols=26  Identities=15%  Similarity=0.273  Sum_probs=23.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      ..++++||+|+|||.+|+.|++.+..
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~   29 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFV   29 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            37889999999999999999999884

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK06620 hypothetical protein; Validated

Probab=96.77  E-value=0.0012  Score=56.88  Aligned_cols=30  Identities=20%  Similarity=0.304  Sum_probs=25.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      ..++|.|++|||||++++.+++..+..+++
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~   74 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK   74 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence            357899999999999999999888765554

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.75  E-value=0.0016  Score=61.79  Aligned_cols=34  Identities=21%  Similarity=0.228  Sum_probs=27.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      ..+..++|.|+||+||||+|+.|++.++..++.+
T Consensus        34 ~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l   67 (413)
T PRK13342         34 GRLSSMILWGPPGTGKTTLARIIAGATDAPFEAL   67 (413)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            3445688899999999999999999987766544

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.75  E-value=0.0039  Score=53.94  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .-.++|.|+||+||||++..++.
T Consensus        20 G~~~~i~G~~G~GKT~l~~~~~~   42 (229)
T TIGR03881        20 GFFVAVTGEPGTGKTIFCLHFAY   42 (229)
T ss_pred             CeEEEEECCCCCChHHHHHHHHH
Confidence            45899999999999999987764

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.74  E-value=0.0017  Score=61.80  Aligned_cols=32  Identities=16%  Similarity=0.391  Sum_probs=27.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      .+.-++|.||||+|||++++.++..++..++.
T Consensus       216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~  247 (438)
T PTZ00361        216 PPKGVILYGPPGTGKTLLAKAVANETSATFLR  247 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence            45578899999999999999999998766554

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.74  E-value=0.0014  Score=57.99  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      +.+++|.|++|+||||+++.+++.+.
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            45789999999999999999999875

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG4240 Predicted kinase [General function prediction only]

Probab=96.74  E-value=0.0022  Score=54.88  Aligned_cols=41  Identities=34%  Similarity=0.432  Sum_probs=32.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---C---CceeehHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY---G---LVHIAAGDLLRAE  122 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l---g---~~~i~~d~l~~~~  122 (303)
                      .+|.+++|+||-||||||++-.|...+   |   ...+|.||++..+
T Consensus        48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlth   94 (300)
T COG4240          48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTH   94 (300)
T ss_pred             CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcch
Confidence            458999999999999999997776554   3   3568889887543

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.73  E-value=0.0016  Score=50.01  Aligned_cols=23  Identities=22%  Similarity=0.250  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +|+|.|.+|+||||+.+.|....
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECcCCCCHHHHHHHHhcCC
Confidence            58899999999999999998753

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.73  E-value=0.0012  Score=57.23  Aligned_cols=26  Identities=27%  Similarity=0.239  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+.-+|.|.||+||||||+.+.++--
T Consensus        27 ~~GEfvsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          27 EKGEFVAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34568999999999999999999863

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.0014  Score=64.52  Aligned_cols=38  Identities=18%  Similarity=0.378  Sum_probs=31.9

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CceeehHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYG--LVHIAAGDL  118 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg--~~~i~~d~l  118 (303)
                      +.+++++|+.||||.|||++++.+|+.+|  |..+|++-+
T Consensus       435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~  474 (906)
T KOG2004|consen  435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGM  474 (906)
T ss_pred             cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence            45678999999999999999999999997  455666544

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.73  E-value=0.0015  Score=53.97  Aligned_cols=31  Identities=26%  Similarity=0.336  Sum_probs=25.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---CC--ceeehH
Q 022042           86 KIMISGAPASGKGTQCELIKEKY---GL--VHIAAG  116 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l---g~--~~i~~d  116 (303)
                      +++++|++|+||||++..|+..+   |.  .+++.|
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D   37 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD   37 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            67899999999999999998876   43  445555

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.72  E-value=0.0034  Score=54.27  Aligned_cols=36  Identities=22%  Similarity=0.206  Sum_probs=25.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh------CCceeehHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY------GLVHIAAGDLL  119 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l------g~~~i~~d~l~  119 (303)
                      +-.++|+|+||+|||++|..++...      ++.++++++-.
T Consensus        19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~   60 (226)
T PF06745_consen   19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP   60 (226)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH
Confidence            3589999999999999998765332      34566664433

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=96.71  E-value=0.0051  Score=55.92  Aligned_cols=132  Identities=17%  Similarity=0.278  Sum_probs=69.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh---CCceeehH-HHHHHHHHcCCcchHHHHHHHHcCCCcChHH--HHHHHHHHHc
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY---GLVHIAAG-DLLRAEIAAGSENGKRAKEHMEKGQLVPDEI--VVTMVKERLS  157 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d-~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~--~~~~l~~~l~  157 (303)
                      .-.|+++|.+|+||||++-.|.+.+   |++.+++| +-++.-+..             +-...+++.  -.+.+.+ +.
T Consensus        50 gctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~k-------------nlgfs~edreenirriae-va  115 (627)
T KOG4238|consen   50 GCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNK-------------NLGFSPEDREENIRRIAE-VA  115 (627)
T ss_pred             ceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhh-------------ccCCCchhHHHHHHHHHH-HH
Confidence            3579999999999999999887765   66666553 233332211             111111111  1111111 11


Q ss_pred             CCCCCCCc-EEEcC----CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCC-CCCCce-----ecccCCCCC
Q 022042          158 QPDSQENG-WLLDG----YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLD-PVTGKI-----YHVKYSPPE  226 (303)
Q Consensus       158 ~~~~~~~~-~Vldg----~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~-~~~g~~-----~~~~~~~p~  226 (303)
                      .+-. ..| +-+..    |..+...+..+-+....|.+-+|++++.++|.+|-.+--+. ...|.+     ....|.+|.
T Consensus       116 klfa-daglvcitsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~gftgids~ye~pe  194 (627)
T KOG4238|consen  116 KLFA-DAGLVCITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKGFTGIDSDYEKPE  194 (627)
T ss_pred             HHHh-cCCceeeehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhccccccccccccccCCCC
Confidence            1111 233 33344    33344444445444556778999999999999886432111 111222     234577777


Q ss_pred             chHH
Q 022042          227 TDEI  230 (303)
Q Consensus       227 ~~~i  230 (303)
                      ++++
T Consensus       195 ~~e~  198 (627)
T KOG4238|consen  195 TPER  198 (627)
T ss_pred             ChhH
Confidence            7664

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.71  E-value=0.002  Score=55.77  Aligned_cols=34  Identities=12%  Similarity=0.092  Sum_probs=27.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh-----CCceeehHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDL  118 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l-----g~~~i~~d~l  118 (303)
                      ..++|.|++|+|||++++.++...     .+.+++..+.
T Consensus        43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~   81 (227)
T PRK08903         43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP   81 (227)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence            468899999999999999999876     4566665544

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=96.71  E-value=0.0019  Score=55.62  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=26.3

Q ss_pred             hcccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           78 ASATVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        78 ~~~~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ......++.++|+||||+||||-+..||..+
T Consensus        42 ia~~gnmP~liisGpPG~GKTTsi~~LAr~L   72 (333)
T KOG0991|consen   42 IAKEGNMPNLIISGPPGTGKTTSILCLAREL   72 (333)
T ss_pred             HHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence            3344567789999999999999999999987

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.71  E-value=0.11  Score=51.38  Aligned_cols=29  Identities=14%  Similarity=0.255  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      .+..++|+|++|+||||+|+.|++.+++.
T Consensus        34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   62 (584)
T PRK14952         34 INHAYLFSGPRGCGKTSSARILARSLNCA   62 (584)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            34567899999999999999999999864

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=96.71  E-value=0.08  Score=50.02  Aligned_cols=37  Identities=16%  Similarity=0.222  Sum_probs=29.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh-----C--CceeehHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY-----G--LVHIAAGDLLRA  121 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l-----g--~~~i~~d~l~~~  121 (303)
                      ..++|.|++|+|||++++.++..+     +  +.+++..++..+
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~  180 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND  180 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence            357899999999999999998865     2  456777776554

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=96.70  E-value=0.0013  Score=54.81  Aligned_cols=30  Identities=23%  Similarity=0.267  Sum_probs=23.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh---C--CceeehH
Q 022042           87 IMISGAPASGKGTQCELIKEKY---G--LVHIAAG  116 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d  116 (303)
                      ++|.|+||+|||+++..++...   |  +.+++++
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e   36 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE   36 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence            6799999999999998876643   3  4566654

A related protein is found in archaea.

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=96.68  E-value=0.0024  Score=51.23  Aligned_cols=30  Identities=23%  Similarity=0.267  Sum_probs=26.8

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      -+.+.+|++.|.-||||||+++.|++.+|.
T Consensus        22 l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~   51 (149)
T COG0802          22 LKAGDVVLLSGDLGAGKTTLVRGIAKGLGV   51 (149)
T ss_pred             CCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence            345679999999999999999999999984

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.67  E-value=0.0027  Score=61.41  Aligned_cols=88  Identities=16%  Similarity=0.128  Sum_probs=50.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCc---------ChHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV---------PDEI  147 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~---------~~~~  147 (303)
                      .+.-.++|.|+||+||||++-.++...   |  ..+++.++-..+.......+|-.+.++...|...         ..+.
T Consensus       261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~  340 (484)
T TIGR02655       261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED  340 (484)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHH
Confidence            345689999999999999998888754   3  4566654333333222223343444444444211         1133


Q ss_pred             HHHHHHHHHcCCCCCCCcEEEcCC
Q 022042          148 VVTMVKERLSQPDSQENGWLLDGY  171 (303)
Q Consensus       148 ~~~~l~~~l~~~~~~~~~~Vldg~  171 (303)
                      ....+.+.+.+..  ...+|+|+.
T Consensus       341 ~~~~i~~~i~~~~--~~~vvIDsi  362 (484)
T TIGR02655       341 HLQIIKSEIADFK--PARIAIDSL  362 (484)
T ss_pred             HHHHHHHHHHHcC--CCEEEEcCH
Confidence            4455555554433  256899984

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=96.67  E-value=0.0023  Score=49.91  Aligned_cols=29  Identities=28%  Similarity=0.403  Sum_probs=26.1

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...+|+++.+.|++|+|||.+++.||+.+
T Consensus        49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            45678899999999999999999999984

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.67  E-value=0.0047  Score=53.76  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=25.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAG  116 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d  116 (303)
                      +-+++|.|+|||||||++..++...   |  +.+++.+
T Consensus        25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e   62 (234)
T PRK06067         25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE   62 (234)
T ss_pred             CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence            4588999999999999999986543   3  3556654

>cd04163 Era Era subfamily

Probab=96.66  E-value=0.0017  Score=52.12  Aligned_cols=23  Identities=26%  Similarity=0.291  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..+|++.|++|+||||+++.|..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~   25 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVG   25 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999864

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PHA03138 thymidine kinase; Provisional

Probab=96.66  E-value=0.021  Score=52.09  Aligned_cols=25  Identities=32%  Similarity=0.432  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      -.+|.|.|+.|+||||+++.+.+.+
T Consensus        12 ~~riYleG~~GvGKTT~~~~~l~~~   36 (340)
T PHA03138         12 ILRIYLDGAFGIGKTTAAEAFLHGF   36 (340)
T ss_pred             EEEEEEECCCCcCHHhHHHHHHHhh
Confidence            3689999999999999998887654

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.65  E-value=0.0022  Score=55.99  Aligned_cols=33  Identities=6%  Similarity=0.006  Sum_probs=26.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGD  117 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~  117 (303)
                      ..++|.||+|+|||++++.++....     ..++++++
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            4788999999999999999988753     45666654

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=96.64  E-value=0.002  Score=52.03  Aligned_cols=32  Identities=19%  Similarity=0.331  Sum_probs=26.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAG  116 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d  116 (303)
                      ..=|+|+|++|+||||+|..|.++ |+.+++-|
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD   45 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR-GHRLVADD   45 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence            456899999999999999999775 76666444

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.63  E-value=0.0018  Score=55.84  Aligned_cols=25  Identities=28%  Similarity=0.284  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+.-+++|.||+||||||+...|.-
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3455899999999999999998864

>PRK06893 DNA replication initiation factor; Validated

Probab=96.63  E-value=0.0026  Score=55.26  Aligned_cols=32  Identities=22%  Similarity=0.284  Sum_probs=26.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh-----CCceeehH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY-----GLVHIAAG  116 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l-----g~~~i~~d  116 (303)
                      +.++|.|++|+|||++++.++..+     +..++++.
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            468899999999999999999875     45566553

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.63  E-value=0.0023  Score=43.54  Aligned_cols=22  Identities=32%  Similarity=0.448  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +.+|+|+.||||||+...+.--
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999888543

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.63  E-value=0.0016  Score=52.39  Aligned_cols=23  Identities=26%  Similarity=0.293  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +++|.|++|+||||++..++...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH
Confidence            36799999999999999998876

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.63  E-value=0.0057  Score=53.56  Aligned_cols=38  Identities=16%  Similarity=0.385  Sum_probs=31.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh--HHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA--GDLLRA  121 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~--d~l~~~  121 (303)
                      |+.|++.||||+|||-+|+.||.+.+.+++.+  ..++-+
T Consensus       151 PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe  190 (368)
T COG1223         151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE  190 (368)
T ss_pred             cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence            57899999999999999999999998776654  444444

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.62  E-value=0.0022  Score=54.81  Aligned_cols=27  Identities=22%  Similarity=0.275  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      .+++|+|+|++||||||+.+.|.+.++
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            578999999999999999999988754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=96.62  E-value=0.085  Score=44.11  Aligned_cols=29  Identities=10%  Similarity=0.039  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      ..+..++|.|++|+||||+++.+++.+..
T Consensus        12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~   40 (188)
T TIGR00678        12 RLAHAYLFAGPEGVGKELLALALAKALLC   40 (188)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence            34567899999999999999999998753

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=96.61  E-value=0.058  Score=50.79  Aligned_cols=28  Identities=14%  Similarity=0.304  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      +.-++|.||+|+||||+|..|++.+.+.
T Consensus        36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~   63 (394)
T PRK07940         36 THAWLFTGPPGSGRSVAARAFAAALQCT   63 (394)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            4568899999999999999999998664

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.61  E-value=0.048  Score=54.00  Aligned_cols=28  Identities=18%  Similarity=0.241  Sum_probs=25.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      +..++|.|++|+||||+|+.|++.+++.
T Consensus        38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~   65 (624)
T PRK14959         38 APAYLFSGTRGVGKTTIARIFAKALNCE   65 (624)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcccc
Confidence            5678899999999999999999999763

>PRK14974 cell division protein FtsY; Provisional

Probab=96.61  E-value=0.0022  Score=58.86  Aligned_cols=27  Identities=22%  Similarity=0.305  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+|.+|+|+|++|+||||++..|+..+
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l  164 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYL  164 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            357899999999999999888888765

>PRK13768 GTPase; Provisional

Probab=96.60  E-value=0.0021  Score=56.85  Aligned_cols=25  Identities=20%  Similarity=0.275  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +++|+|.|++|+||||++..++..+
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l   26 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWL   26 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHH
Confidence            4689999999999999999998876

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=96.60  E-value=0.15  Score=47.00  Aligned_cols=29  Identities=14%  Similarity=0.225  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      .+..++|.|++|+||||+++.|++.+...
T Consensus        35 ~~~~~Ll~G~~G~GKt~~a~~la~~l~~~   63 (355)
T TIGR02397        35 IAHAYLFSGPRGTGKTSIARIFAKALNCQ   63 (355)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            34578899999999999999999998543

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=96.59  E-value=0.0021  Score=57.36  Aligned_cols=25  Identities=28%  Similarity=0.313  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      |++|.|+|.+|||||||+..|+..|
T Consensus         1 M~~i~i~G~~gSGKTTLi~~Li~~L   25 (274)
T PRK14493          1 MKVLSIVGYKATGKTTLVERLVDRL   25 (274)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999999999988

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.011  Score=58.27  Aligned_cols=37  Identities=27%  Similarity=0.393  Sum_probs=31.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehH--HHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAG--DLLRAE  122 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d--~l~~~~  122 (303)
                      -|++.||||||||-++..++...++.+|++.  +++-++
T Consensus       703 giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky  741 (952)
T KOG0735|consen  703 GILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY  741 (952)
T ss_pred             ceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence            5889999999999999999999999999873  444443

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.58  E-value=0.0025  Score=56.95  Aligned_cols=27  Identities=26%  Similarity=0.353  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .++.+|+++|++|+||||.+..||..+
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l   96 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKL   96 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            346789999999999999999998877

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=96.57  E-value=0.002  Score=52.54  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +|+|+|++||||||++..|...+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999876

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.57  E-value=0.0025  Score=58.19  Aligned_cols=27  Identities=30%  Similarity=0.527  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .++.+|+|+|++|+||||++..|+..+
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            356799999999999999999999877

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.56  E-value=0.0026  Score=57.69  Aligned_cols=28  Identities=29%  Similarity=0.425  Sum_probs=24.5

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...+.+|+|+|++||||||++..|+..+
T Consensus        31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~   58 (300)
T TIGR00750        31 TGNAHRVGITGTPGAGKSTLLEALGMEL   58 (300)
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            3467899999999999999999988865

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.55  E-value=0.0019  Score=59.10  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..-+++|.||+||||||+.+.||-
T Consensus        28 ~Gef~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          28 DGEFVVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            445899999999999999999974

>PRK08116 hypothetical protein; Validated

Probab=96.54  E-value=0.022  Score=50.76  Aligned_cols=37  Identities=19%  Similarity=0.384  Sum_probs=29.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRA  121 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~  121 (303)
                      .-++|.|++|+|||.|+..+++.+   |  +.+++..+++..
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~  156 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR  156 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            358899999999999999999976   3  356777777654

>CHL00176 ftsH cell division protein; Validated

Probab=96.54  E-value=0.0026  Score=63.29  Aligned_cols=32  Identities=19%  Similarity=0.388  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      +.-|+|.||||+|||++|+.|+...+.+++.+
T Consensus       216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i  247 (638)
T CHL00176        216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI  247 (638)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence            45699999999999999999999998777654

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=96.54  E-value=0.0091  Score=50.60  Aligned_cols=31  Identities=26%  Similarity=0.462  Sum_probs=24.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---C--CceeehH
Q 022042           86 KIMISGAPASGKGTQCELIKEKY---G--LVHIAAG  116 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d  116 (303)
                      -+++.||.||||||.|..+-++-   |  +.+++.|
T Consensus         5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLD   40 (273)
T KOG1534|consen    5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLD   40 (273)
T ss_pred             eEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecC
Confidence            46799999999999999998764   2  3555554

>COG2326 Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.17  Score=44.15  Aligned_cols=110  Identities=19%  Similarity=0.187  Sum_probs=64.6

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      .....+|++.|-.++||.-..+++.+.+|-..+.+-.+                     ..+.+.+.-...+...+....
T Consensus        71 ~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval---------------------~aPt~~E~~qwY~qRy~~~lP  129 (270)
T COG2326          71 TGQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVAL---------------------PAPTDRERGQWYFQRYVAHLP  129 (270)
T ss_pred             cCCeEEEEEecccccCCCchhHHHhhhcCCceeEEeec---------------------CCCChHhhccHHHHHHHHhCC
Confidence            34557899999999999999999999996433211110                     111111222222333444445


Q ss_pred             CCCCcEEEc-------------CCCCCHHHHHH-------HHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCC
Q 022042          161 SQENGWLLD-------------GYPRSLSQATA-------LKKY---GFQPDLFILLEVPEDTLVERVVGRRLDP  212 (303)
Q Consensus       161 ~~~~~~Vld-------------g~p~~~~~~~~-------l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~  212 (303)
                      ..|..+|+|             || .+..|.+.       |++.   ....-+-+||+++.++-.+|+..|..+|
T Consensus       130 a~GeiviFdRSwYnr~gVeRVmGf-ct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl~Is~eeQ~~RF~~R~~dP  203 (270)
T COG2326         130 AAGEIVIFDRSWYNRAGVERVMGF-CTPKQYKRFLREIPEFERMLVESGIILVKFWLSISREEQLERFLERRNDP  203 (270)
T ss_pred             CCCeEEEechhhccccCeeecccc-CCHHHHHHHHHHhhHHHHHHHhCCeEEEEEEEeCCHHHHHHHHHHHhcCH
Confidence            445556655             34 23332222       2221   1123357899999999999999997654

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.53  E-value=0.0022  Score=62.29  Aligned_cols=27  Identities=19%  Similarity=0.251  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.+++++.||||+||||+++.|++.+
T Consensus       101 ~~~~IL~LvGPpG~GKSsLa~~la~~l  127 (644)
T PRK15455        101 EKKQILYLLGPVGGGKSSLAERLKSLM  127 (644)
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHH
Confidence            455799999999999999999999865

>PRK12377 putative replication protein; Provisional

Probab=96.53  E-value=0.0041  Score=54.70  Aligned_cols=38  Identities=21%  Similarity=0.462  Sum_probs=30.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAE  122 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~~  122 (303)
                      ..++|.|++|+|||+++..|+..+   |  +.++++.+++...
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l  144 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL  144 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence            468899999999999999999887   3  3567777776543

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=96.52  E-value=0.0024  Score=56.43  Aligned_cols=26  Identities=27%  Similarity=0.572  Sum_probs=23.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      -+++.||||-||||+|..+|.++|..
T Consensus        54 HvLl~GPPGlGKTTLA~IIA~Emgvn   79 (332)
T COG2255          54 HVLLFGPPGLGKTTLAHIIANELGVN   79 (332)
T ss_pred             eEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence            68899999999999999999999753

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.52  E-value=0.0047  Score=51.56  Aligned_cols=40  Identities=28%  Similarity=0.458  Sum_probs=31.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAE  122 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~~  122 (303)
                      ....++|.|++|+|||.+|..++.++   |  ..+++..+++...
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l   90 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL   90 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence            34679999999999999999998765   3  4678888888764

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=96.51  E-value=0.0026  Score=59.42  Aligned_cols=28  Identities=25%  Similarity=0.418  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ..|.+|.|+|.+||||||+++.|.+++.
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~   30 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLS   30 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            3578999999999999999999998875

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.50  E-value=0.0026  Score=53.45  Aligned_cols=27  Identities=30%  Similarity=0.289  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .....++|+|++||||||+.+.|...+
T Consensus        23 ~~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          23 EARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            345689999999999999999998765

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.50  E-value=0.0022  Score=62.00  Aligned_cols=29  Identities=17%  Similarity=0.374  Sum_probs=25.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      .|.-|+|.||||+|||++++.+++.++..
T Consensus       215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~  243 (512)
T TIGR03689       215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR  243 (512)
T ss_pred             CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence            35679999999999999999999998643

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.50  E-value=0.003  Score=60.80  Aligned_cols=27  Identities=15%  Similarity=0.322  Sum_probs=24.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      +..+++.||||+||||+|+.|++.+++
T Consensus        36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962         36 SHAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            345889999999999999999999875

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.49  E-value=0.0024  Score=55.19  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ++-.++|.|.+||||||+++.|+-
T Consensus        32 ~Ge~lgivGeSGsGKSTL~r~l~G   55 (252)
T COG1124          32 RGETLGIVGESGSGKSTLARLLAG   55 (252)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhc
Confidence            455899999999999999999975

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.47  E-value=0.0033  Score=58.59  Aligned_cols=28  Identities=21%  Similarity=0.270  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      .+..++|+||+|+||||+|+.+++.+++
T Consensus        37 ~~h~~L~~Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961         37 IHHAWLLSGTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            3456789999999999999999999875

>PRK06526 transposase; Provisional

Probab=96.47  E-value=0.0037  Score=55.21  Aligned_cols=39  Identities=15%  Similarity=0.227  Sum_probs=28.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CC--ceeehHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY---GL--VHIAAGDLLRA  121 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l---g~--~~i~~d~l~~~  121 (303)
                      ....++|.||+|+|||+++..|+...   |.  .++++.+++..
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~  140 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR  140 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence            34578999999999999999998764   33  34555555544

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.44  E-value=0.22  Score=48.22  Aligned_cols=27  Identities=15%  Similarity=0.295  Sum_probs=24.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      +..++|+|++|+||||+|+.+++.+++
T Consensus        38 ~hayLf~Gp~G~GKTtlAr~lAk~L~c   64 (486)
T PRK14953         38 SHAYIFAGPRGTGKTTIARILAKVLNC   64 (486)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            446789999999999999999999875

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.44  E-value=0.0021  Score=50.70  Aligned_cols=26  Identities=23%  Similarity=0.210  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|+|+.||||||+.+.|+..+
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEccCCCccccceeeecccc
Confidence            34589999999999999999997654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.43  E-value=0.0028  Score=48.58  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~  106 (303)
                      .|+|.|.+|+||||+.+.|..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999974

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.43  E-value=0.0033  Score=60.10  Aligned_cols=28  Identities=14%  Similarity=0.215  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      +..++|+||+|+||||+|+.|++.+++.
T Consensus        40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce   67 (484)
T PRK14956         40 GHAYIFFGPRGVGKTTIARILAKRLNCE   67 (484)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence            4468899999999999999999999864

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.42  E-value=0.0033  Score=56.45  Aligned_cols=26  Identities=19%  Similarity=0.302  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ++.+|+|+||.|+||||++..|+..+
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45699999999999999999998765

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.41  E-value=0.0052  Score=56.04  Aligned_cols=43  Identities=21%  Similarity=0.453  Sum_probs=33.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceee--hHHHHHHHHHcC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA--AGDLLRAEIAAG  126 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~--~d~l~~~~~~~~  126 (303)
                      |+=|++.||||+|||-+|+..|.+.+..+|-  -.+++++++-.+
T Consensus       185 PKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEG  229 (406)
T COG1222         185 PKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEG  229 (406)
T ss_pred             CCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccc
Confidence            3458899999999999999999999876654  467777765544

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.41  E-value=0.0033  Score=56.48  Aligned_cols=31  Identities=19%  Similarity=0.299  Sum_probs=27.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAG  116 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d  116 (303)
                      .|++.||.|||||-+|+-||+.++.++-=+|
T Consensus        99 NILLiGPTGsGKTlLAqTLAk~LnVPFaiAD  129 (408)
T COG1219          99 NILLIGPTGSGKTLLAQTLAKILNVPFAIAD  129 (408)
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhCCCeeecc
Confidence            7999999999999999999999998775443

>PRK09183 transposase/IS protein; Provisional

Probab=96.41  E-value=0.0052  Score=54.49  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=27.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh---CC--ceeehHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY---GL--VHIAAGDLLR  120 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l---g~--~~i~~d~l~~  120 (303)
                      ...++|.|++|+|||+++..|+...   |.  .+++..+++.
T Consensus       102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~  143 (259)
T PRK09183        102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL  143 (259)
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH
Confidence            4578899999999999999997653   33  4556555553

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.41  E-value=0.003  Score=53.04  Aligned_cols=26  Identities=19%  Similarity=0.161  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44589999999999999999997543

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=96.41  E-value=0.003  Score=51.67  Aligned_cols=25  Identities=32%  Similarity=0.216  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      |+++.|+|..+||||||.+.|..++
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L   26 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKL   26 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHH
Confidence            5789999999999999999998887

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.40  E-value=0.0039  Score=45.45  Aligned_cols=31  Identities=19%  Similarity=0.250  Sum_probs=25.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---CCceeehH
Q 022042           86 KIMISGAPASGKGTQCELIKEKY---GLVHIAAG  116 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d  116 (303)
                      +|++.|..|+||||++..|+..+   |...+-.|
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            36799999999999999999987   55555444

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=96.39  E-value=0.0027  Score=54.77  Aligned_cols=33  Identities=18%  Similarity=0.287  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD  117 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~  117 (303)
                      .+..++|.|+||+||||+|+.|+.  ...+++.|.
T Consensus        11 ~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~   43 (220)
T TIGR01618        11 IPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDM   43 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccc
Confidence            356799999999999999999963  245555554

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK04296 thymidine kinase; Provisional

Probab=96.38  E-value=0.0034  Score=52.95  Aligned_cols=24  Identities=33%  Similarity=0.236  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+++++|++|+||||++..++.++
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHH
Confidence            588999999999999998888876

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.0025  Score=59.62  Aligned_cols=29  Identities=14%  Similarity=0.235  Sum_probs=26.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           87 IMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      .++.||||+||||+..++|..+++.++++
T Consensus       238 YLLYGPPGTGKSS~IaAmAn~L~ydIydL  266 (457)
T KOG0743|consen  238 YLLYGPPGTGKSSFIAAMANYLNYDIYDL  266 (457)
T ss_pred             ceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence            66999999999999999999999877654

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.36  E-value=0.004  Score=56.62  Aligned_cols=30  Identities=23%  Similarity=0.311  Sum_probs=25.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCce
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVH  112 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~  112 (303)
                      .+..+++.|++|+||||+++.|++.++..+
T Consensus        42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~~   71 (316)
T PHA02544         42 IPNMLLHSPSPGTGKTTVAKALCNEVGAEV   71 (316)
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence            345777799999999999999999886543

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.36  E-value=0.0033  Score=54.00  Aligned_cols=26  Identities=23%  Similarity=0.235  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            45689999999999999999998654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.36  E-value=0.0032  Score=53.98  Aligned_cols=26  Identities=23%  Similarity=0.256  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44689999999999999999998654

>TIGR00763 lon ATP-dependent protease La

Probab=96.36  E-value=0.0038  Score=63.88  Aligned_cols=31  Identities=16%  Similarity=0.244  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      ++..+++.||||+|||++|+.|++.++..++
T Consensus       346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~  376 (775)
T TIGR00763       346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFV  376 (775)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence            3458999999999999999999999976654

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PLN03025 replication factor C subunit; Provisional

Probab=96.35  E-value=0.0037  Score=57.13  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.++|.||||+||||+++.+++.+
T Consensus        34 ~~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         34 MPNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            3457799999999999999999987

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.33  E-value=0.0035  Score=55.17  Aligned_cols=27  Identities=22%  Similarity=0.103  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ++..+++|.||.||||||+.+.|+.-+
T Consensus        26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l   52 (258)
T COG1120          26 PKGEITGILGPNGSGKSTLLKCLAGLL   52 (258)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            456799999999999999999998865

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.33  E-value=0.0035  Score=53.61  Aligned_cols=26  Identities=23%  Similarity=0.311  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44589999999999999999998654

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.33  E-value=0.0042  Score=55.65  Aligned_cols=27  Identities=22%  Similarity=0.233  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ....+|.|+|+||||||||.+.|.+.+
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l  128 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRL  128 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            456799999999999999999988875

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.33  E-value=0.0036  Score=63.71  Aligned_cols=32  Identities=22%  Similarity=0.474  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      .+.-|+|.|+||+||||+++.|+..++..++.
T Consensus       211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~  242 (733)
T TIGR01243       211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFIS  242 (733)
T ss_pred             CCceEEEECCCCCChHHHHHHHHHHhCCeEEE
Confidence            34679999999999999999999999876554

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.32  E-value=0.0037  Score=53.39  Aligned_cols=26  Identities=27%  Similarity=0.332  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999997644

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.32  E-value=0.0031  Score=58.02  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +.-+++|.||+||||||+.+.||-
T Consensus        30 ~Gef~~lLGPSGcGKTTlLR~IAG   53 (352)
T COG3842          30 KGEFVTLLGPSGCGKTTLLRMIAG   53 (352)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            345889999999999999999985

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=96.31  E-value=0.018  Score=55.17  Aligned_cols=37  Identities=16%  Similarity=0.180  Sum_probs=29.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh-----C--CceeehHHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKEKY-----G--LVHIAAGDLLRAE  122 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l-----g--~~~i~~d~l~~~~  122 (303)
                      -++|.|++|+|||++++.++.++     +  +.+++..++..+.
T Consensus       150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~  193 (450)
T PRK00149        150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF  193 (450)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence            48899999999999999999886     2  3467777765543

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=0.0032  Score=60.97  Aligned_cols=31  Identities=19%  Similarity=0.409  Sum_probs=27.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      -=|+++||||||||-+|+..|.+-|+-+|++
T Consensus       546 sGvLL~GPPGCGKTLlAKAVANEag~NFisV  576 (802)
T KOG0733|consen  546 SGVLLCGPPGCGKTLLAKAVANEAGANFISV  576 (802)
T ss_pred             CceEEeCCCCccHHHHHHHHhhhccCceEee
Confidence            3588999999999999999999988877775

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.30  E-value=0.0037  Score=53.49  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44689999999999999999997643

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=96.29  E-value=0.0043  Score=60.08  Aligned_cols=29  Identities=17%  Similarity=0.221  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      .+.-++++|++|+||||+|+.|++.+++.
T Consensus        42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~   70 (507)
T PRK06645         42 LAGGYLLTGIRGVGKTTSARIIAKAVNCS   70 (507)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            34578899999999999999999999864

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.28  E-value=0.004  Score=51.78  Aligned_cols=27  Identities=22%  Similarity=0.140  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+..+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          24 EAGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345689999999999999999997543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.28  E-value=0.0042  Score=53.17  Aligned_cols=26  Identities=27%  Similarity=0.344  Sum_probs=17.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...+.+|.||||+||||+...+...+
T Consensus        16 ~~~~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   16 SNGITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             SSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCChHHHHHHHHHHh
Confidence            33368899999999997666665554

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=96.27  E-value=0.0043  Score=53.82  Aligned_cols=25  Identities=32%  Similarity=0.219  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      |++|.|+|++||||||++..|+++|
T Consensus         1 m~vi~ivG~~gsGKTtl~~~l~~~L   25 (229)
T PRK14494          1 MRAIGVIGFKDSGKTTLIEKILKNL   25 (229)
T ss_pred             CeEEEEECCCCChHHHHHHHHHHHH
Confidence            4589999999999999999999888

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.27  E-value=0.004  Score=53.15  Aligned_cols=26  Identities=19%  Similarity=0.157  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44589999999999999999998643

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=96.27  E-value=0.11  Score=49.74  Aligned_cols=28  Identities=18%  Similarity=0.267  Sum_probs=24.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      +..++|.|++|+||||+|+.+++.+.+.
T Consensus        39 ~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~   66 (451)
T PRK06305         39 AHAYLFSGIRGTGKTTLARIFAKALNCQ   66 (451)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence            4568899999999999999999998653

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.26  E-value=0.0041  Score=53.51  Aligned_cols=26  Identities=23%  Similarity=0.189  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999997543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=96.25  E-value=0.055  Score=54.44  Aligned_cols=28  Identities=14%  Similarity=0.283  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      +..+++.||+|+||||+|+.||+.+++.
T Consensus        40 ~HAYLF~GP~GtGKTt~AriLAk~LnC~   67 (725)
T PRK07133         40 SHAYLFSGPRGTGKTSVAKIFANALNCS   67 (725)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence            4567899999999999999999998764

>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]

Probab=96.25  E-value=0.027  Score=45.98  Aligned_cols=29  Identities=24%  Similarity=0.417  Sum_probs=24.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      +.|+|+|+.-||||+.|+.|+...+...+
T Consensus         1 ~~ilvtGgaRSGKS~~AE~la~~~~~~v~   29 (175)
T COG2087           1 MMILVTGGARSGKSSFAEALAGESGGQVL   29 (175)
T ss_pred             CeEEEecCccCCchHHHHHHHHhhCCceE
Confidence            46899999999999999999998665443

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.25  E-value=0.0042  Score=53.46  Aligned_cols=26  Identities=27%  Similarity=0.270  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.25  E-value=0.0041  Score=54.11  Aligned_cols=26  Identities=31%  Similarity=0.279  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44689999999999999999998654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.24  E-value=0.0042  Score=53.70  Aligned_cols=26  Identities=19%  Similarity=0.217  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.+++|.|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            45689999999999999999998765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK08181 transposase; Validated

Probab=96.24  E-value=0.0078  Score=53.60  Aligned_cols=40  Identities=20%  Similarity=0.374  Sum_probs=31.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAE  122 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~~  122 (303)
                      ....++|.|++|+|||.++..|+.+.   |  +.++++.+++...
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l  149 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL  149 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence            34579999999999999999998654   4  4567777777654

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.24  E-value=0.0042  Score=53.11  Aligned_cols=26  Identities=23%  Similarity=0.169  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999997643

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PHA03133 thymidine kinase; Provisional

Probab=96.23  E-value=0.082  Score=48.53  Aligned_cols=27  Identities=26%  Similarity=0.434  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      .-.+|.|.|+.|.||||.++.+...++
T Consensus        39 ~~~rvYlDG~~GvGKTTt~~~l~~a~~   65 (368)
T PHA03133         39 ALLRIYVDGPHGLGKTTTAAALAAALG   65 (368)
T ss_pred             eEEEEEEeCCCcCCHHHHHHHHHHhhC
Confidence            336899999999999999988888875

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.23  E-value=0.0042  Score=52.85  Aligned_cols=26  Identities=19%  Similarity=0.270  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999997643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.23  E-value=0.0039  Score=53.25  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +++|.|+.||||||+.+.|+..+
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            88999999999999999997543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.23  E-value=0.0048  Score=53.84  Aligned_cols=27  Identities=26%  Similarity=0.401  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+.+++|.|++||||||++..|...+
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~~   37 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYYL   37 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            345689999999999999998887765

This is thought to be an ATPase involved in viral DNA packaging [].

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.23  E-value=0.0039  Score=54.18  Aligned_cols=26  Identities=23%  Similarity=0.125  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            45689999999999999999997643

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.22  E-value=0.0044  Score=52.97  Aligned_cols=26  Identities=19%  Similarity=0.248  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998654

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.22  E-value=0.011  Score=57.28  Aligned_cols=33  Identities=15%  Similarity=0.161  Sum_probs=24.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH----hC--CceeehH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK----YG--LVHIAAG  116 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~----lg--~~~i~~d  116 (303)
                      .-.++|.|+|||||||+|..++-+    +|  ..+|+.+
T Consensus        21 g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e   59 (484)
T TIGR02655        21 GRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE   59 (484)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            458999999999999999987432    23  4566654

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.22  E-value=0.0043  Score=52.71  Aligned_cols=26  Identities=27%  Similarity=0.197  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            44689999999999999999998654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK06921 hypothetical protein; Provisional

Probab=96.22  E-value=0.011  Score=52.72  Aligned_cols=38  Identities=18%  Similarity=0.219  Sum_probs=28.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh----CC--ceeehHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY----GL--VHIAAGDLLRA  121 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l----g~--~~i~~d~l~~~  121 (303)
                      ...++|.|++|+|||+++..++..+    |.  .+++..+++..
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~  160 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD  160 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence            4578999999999999999998865    33  35666555543

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=96.22  E-value=0.0039  Score=53.33  Aligned_cols=26  Identities=23%  Similarity=0.170  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            45689999999999999999997643

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.21  E-value=0.0043  Score=51.77  Aligned_cols=26  Identities=27%  Similarity=0.349  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            44589999999999999999998654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.20  E-value=0.0044  Score=54.01  Aligned_cols=26  Identities=15%  Similarity=0.158  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+.-+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            45689999999999999999998644

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=96.20  E-value=0.0048  Score=56.62  Aligned_cols=30  Identities=20%  Similarity=0.414  Sum_probs=25.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      ...++|.|+||+|||++++.+|+.+|..++
T Consensus        43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~   72 (329)
T COG0714          43 GGHVLLEGPPGVGKTLLARALARALGLPFV   72 (329)
T ss_pred             CCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence            346889999999999999999999986554

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.20  E-value=0.0045  Score=53.80  Aligned_cols=26  Identities=31%  Similarity=0.302  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            44589999999999999999998644

>PHA02624 large T antigen; Provisional

Probab=96.20  E-value=0.0059  Score=59.64  Aligned_cols=33  Identities=18%  Similarity=0.181  Sum_probs=28.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      +...|+|.||||+||||++..|.+.+|...+++
T Consensus       430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV  462 (647)
T PHA02624        430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV  462 (647)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence            345899999999999999999999996666665

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.20  E-value=0.0044  Score=53.36  Aligned_cols=26  Identities=23%  Similarity=0.243  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44689999999999999999997643

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.20  E-value=0.0048  Score=50.77  Aligned_cols=26  Identities=15%  Similarity=0.374  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+++.|+..+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44589999999999999999997654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.19  E-value=0.0046  Score=53.15  Aligned_cols=26  Identities=15%  Similarity=0.212  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44589999999999999999998644

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.19  E-value=0.0046  Score=52.81  Aligned_cols=26  Identities=27%  Similarity=0.229  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44589999999999999999998643

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.18  E-value=0.0048  Score=52.10  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            44589999999999999999997654

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.18  E-value=0.0049  Score=51.25  Aligned_cols=27  Identities=30%  Similarity=0.369  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+-+++|.|+.||||||+.+.|+..+
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          26 KQGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            345689999999999999999998654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=96.18  E-value=0.0044  Score=52.72  Aligned_cols=22  Identities=36%  Similarity=0.383  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+++|+|+.||||||+.+.|+-
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHH
Confidence            5889999999999999999974

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.18  E-value=0.0046  Score=54.01  Aligned_cols=26  Identities=23%  Similarity=0.204  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            44589999999999999999998644

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.17  E-value=0.005  Score=53.61  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=18.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .-+++|.|++||||||+|..++-
T Consensus        24 g~~~~i~G~~G~GKTtl~~~~~~   46 (230)
T PRK08533         24 GSLILIEGDESTGKSILSQRLAY   46 (230)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34889999999999999855544

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=96.17  E-value=0.0045  Score=53.43  Aligned_cols=26  Identities=23%  Similarity=0.226  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          30 KGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998644

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.17  E-value=0.0048  Score=51.40  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..-+++|.|+.||||||+.+.+..
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhh
Confidence            345899999999999999998853

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd04155 Arl3 Arl3 subfamily

Probab=96.17  E-value=0.0046  Score=50.64  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ...|+|.|++||||||+.+.|...
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcC
Confidence            458999999999999999999653

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.17  E-value=0.005  Score=50.94  Aligned_cols=26  Identities=19%  Similarity=0.134  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44589999999999999999997643

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10867 signal recognition particle protein; Provisional

Probab=96.16  E-value=0.0057  Score=58.09  Aligned_cols=35  Identities=26%  Similarity=0.325  Sum_probs=26.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh----CC--ceeehH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY----GL--VHIAAG  116 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l----g~--~~i~~d  116 (303)
                      ..|.+|+++|++||||||.+-.||..|    |.  ..++.|
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D  138 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD  138 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            346799999999999999887777654    43  456665

>cd01394 radB RadB

Probab=96.16  E-value=0.0061  Score=52.35  Aligned_cols=26  Identities=15%  Similarity=0.197  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +..++.|.|+|||||||+|..++...
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~~a~~~   43 (218)
T cd01394          18 RGTVTQVYGPPGTGKTNIAIQLAVET   43 (218)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998765

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=96.16  E-value=0.082  Score=45.60  Aligned_cols=38  Identities=21%  Similarity=0.372  Sum_probs=29.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh-----C--CceeehHHHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKEKY-----G--LVHIAAGDLLRAEI  123 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l-----g--~~~i~~d~l~~~~~  123 (303)
                      .++|.|++|+|||.|.+.++.++     +  +.+++.+++.....
T Consensus        36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~   80 (219)
T PF00308_consen   36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFA   80 (219)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHH
Confidence            47899999999999999998764     2  45788877776543

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=96.16  E-value=0.0048  Score=52.97  Aligned_cols=26  Identities=35%  Similarity=0.225  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...+++|.|+.||||||+.+.|+.-+
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            44689999999999999999998643

>TIGR02012 tigrfam_recA protein RecA

Probab=96.16  E-value=0.023  Score=51.81  Aligned_cols=38  Identities=29%  Similarity=0.207  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLR  120 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~  120 (303)
                      +..++.|.|+|||||||+|-.++...   |  +.+|+......
T Consensus        54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~   96 (321)
T TIGR02012        54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD   96 (321)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhH
Confidence            34589999999999999998876654   2  35676654433

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.16  E-value=0.0059  Score=57.76  Aligned_cols=27  Identities=33%  Similarity=0.434  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+|.+|+++|++|+||||.+..||..|
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l  124 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYY  124 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            346799999999999999999999876

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=96.16  E-value=0.0057  Score=56.27  Aligned_cols=26  Identities=31%  Similarity=0.537  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ...|+|.||||+|||.+|-.+++.||
T Consensus        50 Gr~iLiaGppGtGKTAlA~~ia~eLG   75 (398)
T PF06068_consen   50 GRAILIAGPPGTGKTALAMAIAKELG   75 (398)
T ss_dssp             T-EEEEEE-TTSSHHHHHHHHHHHCT
T ss_pred             CcEEEEeCCCCCCchHHHHHHHHHhC
Confidence            57899999999999999999999997

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=96.16  E-value=0.0048  Score=53.82  Aligned_cols=26  Identities=27%  Similarity=0.224  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=96.15  E-value=0.0058  Score=51.06  Aligned_cols=27  Identities=22%  Similarity=0.298  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.-+++|+|++||||||+.+.|....
T Consensus        26 ~~Gef~fl~GpSGAGKSTllkLi~~~e   52 (223)
T COG2884          26 PKGEFVFLTGPSGAGKSTLLKLIYGEE   52 (223)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhhh
Confidence            344589999999999999999997754

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.15  E-value=0.005  Score=52.96  Aligned_cols=26  Identities=15%  Similarity=0.188  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44689999999999999999998643

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.15  E-value=0.0049  Score=53.48  Aligned_cols=26  Identities=23%  Similarity=0.137  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44589999999999999999998754

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.15  E-value=0.005  Score=53.63  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            45689999999999999999998654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=96.14  E-value=0.0037  Score=54.05  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Q 022042           87 IMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~l  108 (303)
                      |+|.|+|||||||+.+.+.+..
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc
Confidence            5799999999999999998874

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.14  E-value=0.11  Score=52.56  Aligned_cols=88  Identities=23%  Similarity=0.234  Sum_probs=54.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh----CCceeehHH-------HHHHHH---H-cCCcchHHHHHHHHcCCCcChHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY----GLVHIAAGD-------LLRAEI---A-AGSENGKRAKEHMEKGQLVPDEIVV  149 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l----g~~~i~~d~-------l~~~~~---~-~~~~~~~~i~~~~~~g~~~~~~~~~  149 (303)
                      ..++|.-|.|.||||++-.+++..    ++..++.|+       ++...+   . .-...+.....+..+...++-..+.
T Consensus        38 RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~  117 (894)
T COG2909          38 RLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLL  117 (894)
T ss_pred             eEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHH
Confidence            489999999999999998886533    456676651       222221   1 1234555555666666766666665


Q ss_pred             HHHHHHHcCCCCCCCcEEEcCCCC
Q 022042          150 TMVKERLSQPDSQENGWLLDGYPR  173 (303)
Q Consensus       150 ~~l~~~l~~~~~~~~~~Vldg~p~  173 (303)
                      ..+...+..... --.+|+|+|.+
T Consensus       118 ~~L~~Ela~~~~-pl~LVlDDyHl  140 (894)
T COG2909         118 SSLLNELASYEG-PLYLVLDDYHL  140 (894)
T ss_pred             HHHHHHHHhhcC-ceEEEeccccc
Confidence            555555555332 12578899764

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.14  E-value=0.0055  Score=57.00  Aligned_cols=26  Identities=15%  Similarity=0.183  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +..+|+|.||+|+||||++..|+..+
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998764

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=96.13  E-value=0.0052  Score=53.17  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ..-+++|.|+.||||||+.+.|+.-
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~   56 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASL   56 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999764

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.13  E-value=0.0053  Score=52.06  Aligned_cols=27  Identities=22%  Similarity=0.210  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+..+
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         25 PAGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345689999999999999999997643

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=96.13  E-value=0.005  Score=51.28  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ++++|+|..||||||+.+.|.+
T Consensus         1 Pv~ii~GfLGsGKTTli~~ll~   22 (178)
T PF02492_consen    1 PVIIITGFLGSGKTTLINHLLK   22 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4788999999999999999985

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.13  E-value=0.0051  Score=51.85  Aligned_cols=24  Identities=17%  Similarity=0.243  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..-+++|+|+.||||||+.+.|+.
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            456899999999999999999984

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=96.13  E-value=0.0063  Score=61.49  Aligned_cols=36  Identities=17%  Similarity=0.206  Sum_probs=28.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD  117 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~  117 (303)
                      .....++|.||||+||||+|+.+++.++..++.++.
T Consensus        50 ~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna   85 (725)
T PRK13341         50 DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA   85 (725)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence            334467899999999999999999988766655443

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=96.12  E-value=0.0058  Score=62.41  Aligned_cols=32  Identities=19%  Similarity=0.258  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      +..+++|.||||+||||+++.+++.++..++.
T Consensus       348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~  379 (784)
T PRK10787        348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVR  379 (784)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            45689999999999999999999999876643

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.12  E-value=0.004  Score=57.38  Aligned_cols=28  Identities=25%  Similarity=0.383  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      .....|+|+|++||||||+.+.|...++
T Consensus       160 ~~~~nilI~G~tGSGKTTll~aLl~~i~  187 (344)
T PRK13851        160 VGRLTMLLCGPTGSGKTTMSKTLISAIP  187 (344)
T ss_pred             HcCCeEEEECCCCccHHHHHHHHHcccC
Confidence            3456899999999999999999988764

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.12  E-value=0.0056  Score=50.67  Aligned_cols=26  Identities=31%  Similarity=0.316  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            45589999999999999999998754

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK07952 DNA replication protein DnaC; Validated

Probab=96.12  E-value=0.0086  Score=52.56  Aligned_cols=37  Identities=27%  Similarity=0.523  Sum_probs=29.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRA  121 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~  121 (303)
                      .-++|.|++|+|||+++..|+..+   |  +.++++.+++..
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~  141 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA  141 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence            368899999999999999999987   3  345677777654

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.11  E-value=0.0068  Score=51.65  Aligned_cols=33  Identities=30%  Similarity=0.450  Sum_probs=26.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAG  116 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d  116 (303)
                      ..++.|+|+||||||++|..++...   |  ..+++.+
T Consensus        12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e   49 (209)
T TIGR02237        12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE   49 (209)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            4589999999999999999988654   3  4566654

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.11  E-value=0.0052  Score=52.31  Aligned_cols=25  Identities=16%  Similarity=0.205  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +..+-.|+||+||||||+.+.|-+-
T Consensus        32 ~~~VTAlIGPSGcGKST~LR~lNRm   56 (253)
T COG1117          32 KNKVTALIGPSGCGKSTLLRCLNRM   56 (253)
T ss_pred             CCceEEEECCCCcCHHHHHHHHHhh
Confidence            3457889999999999999998553

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=96.11  E-value=0.0054  Score=52.12  Aligned_cols=27  Identities=19%  Similarity=0.185  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+.+++|.|+.||||||+.+.|+..+
T Consensus        29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~   55 (204)
T cd03250          29 PKGELVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence            455699999999999999999997654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.10  E-value=0.0052  Score=53.72  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+++.|+..+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         28 GGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998754

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=96.10  E-value=0.0052  Score=53.64  Aligned_cols=25  Identities=28%  Similarity=0.237  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ..-+++|.|+.||||||+.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        25 KGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4468999999999999999999764

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=96.09  E-value=0.0053  Score=53.18  Aligned_cols=26  Identities=15%  Similarity=0.075  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.09  E-value=0.0053  Score=53.89  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         28 DNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            45689999999999999999998754

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=96.09  E-value=0.0057  Score=52.12  Aligned_cols=25  Identities=20%  Similarity=0.139  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ..-+++|.|+.||||||+.+.|+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl   49 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGL   49 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999754

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.08  E-value=0.0056  Score=53.06  Aligned_cols=26  Identities=19%  Similarity=0.155  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999998643

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=96.07  E-value=0.0054  Score=53.97  Aligned_cols=25  Identities=16%  Similarity=0.205  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+-+++|.|+.||||||+.+.|+..
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         31 QNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4568999999999999999999864

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=96.07  E-value=0.0054  Score=53.99  Aligned_cols=26  Identities=23%  Similarity=0.220  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|++||||||+++.|+..+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        28 PGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998754

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=96.07  E-value=0.0055  Score=54.12  Aligned_cols=26  Identities=23%  Similarity=0.238  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44689999999999999999998654

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=96.07  E-value=0.0056  Score=53.73  Aligned_cols=26  Identities=27%  Similarity=0.158  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         28 PGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999998654

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=96.07  E-value=0.0057  Score=53.46  Aligned_cols=26  Identities=12%  Similarity=0.235  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998654

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.06  E-value=0.0058  Score=52.87  Aligned_cols=26  Identities=23%  Similarity=0.248  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            45699999999999999999998654

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=96.06  E-value=0.006  Score=54.02  Aligned_cols=33  Identities=18%  Similarity=0.300  Sum_probs=25.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAG  116 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d  116 (303)
                      ...++|.|+||||||+++.+++...   |  +.+|+.+
T Consensus        23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~   60 (260)
T COG0467          23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE   60 (260)
T ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            3589999999999999998887654   2  4566654

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=96.06  E-value=0.0056  Score=52.05  Aligned_cols=25  Identities=16%  Similarity=0.344  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +.-|+|.|+||+|||++|++|..-+
T Consensus        22 ~h~lLl~GppGtGKTmlA~~l~~lL   46 (206)
T PF01078_consen   22 GHHLLLIGPPGTGKTMLARRLPSLL   46 (206)
T ss_dssp             C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHhC
Confidence            4578999999999999999998765

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=96.05  E-value=0.0058  Score=52.80  Aligned_cols=26  Identities=19%  Similarity=0.103  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|++||||||+.+.|+..+
T Consensus         5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   30 (223)
T TIGR03771         5 KGELLGLLGPNGAGKTTLLRAILGLI   30 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999998754

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.05  E-value=0.0063  Score=56.79  Aligned_cols=26  Identities=23%  Similarity=0.298  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ++.+|+|.|+.|+||||++..|+..+
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L  265 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQF  265 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence            45789999999999999999998776

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=96.05  E-value=0.0057  Score=53.08  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770        11 RGEVLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44589999999999999999998654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.05  E-value=0.0059  Score=49.01  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+..+
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          24 NPGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            344689999999999999999997654

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.05  E-value=0.0063  Score=50.72  Aligned_cols=26  Identities=19%  Similarity=0.151  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999997654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.04  E-value=0.0061  Score=51.98  Aligned_cols=26  Identities=27%  Similarity=0.332  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +.-+++|.|+.||||||+.+.|+..+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999997643

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=96.03  E-value=0.0056  Score=58.05  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ...|++.|+||+|||++|+.|+..++
T Consensus       194 ~~~iil~GppGtGKT~lA~~la~~l~  219 (459)
T PRK11331        194 KKNIILQGPPGVGKTFVARRLAYLLT  219 (459)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence            45788999999999999999999874

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.03  E-value=0.0064  Score=49.87  Aligned_cols=26  Identities=19%  Similarity=0.276  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44689999999999999999997643

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.02  E-value=0.0062  Score=50.86  Aligned_cols=26  Identities=15%  Similarity=0.082  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44589999999999999999998654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=96.02  E-value=0.0059  Score=49.36  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=20.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Q 022042           87 IMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~l  108 (303)
                      |++.|+.||||||++..|+..+
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~   23 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITAL   23 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            7799999999999999999876

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=96.01  E-value=0.0059  Score=54.28  Aligned_cols=27  Identities=33%  Similarity=0.347  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .....|+|+|++||||||+...|.+.+
T Consensus       125 ~~~~~ili~G~tGSGKTT~l~all~~i  151 (270)
T PF00437_consen  125 RGRGNILISGPTGSGKTTLLNALLEEI  151 (270)
T ss_dssp             HTTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred             ccceEEEEECCCccccchHHHHHhhhc
Confidence            346789999999999999999999877

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>TIGR00959 ffh signal recognition particle protein

Probab=96.01  E-value=0.0074  Score=57.27  Aligned_cols=35  Identities=29%  Similarity=0.481  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh----C--CceeehH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY----G--LVHIAAG  116 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l----g--~~~i~~d  116 (303)
                      .+|.+|+++|++|+||||++..||..+    |  ...++.|
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D  137 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD  137 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            346799999999999999988888764    3  3446665

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=96.00  E-value=0.0063  Score=52.63  Aligned_cols=26  Identities=27%  Similarity=0.372  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.+++|.|+.||||||+.+.|+..+
T Consensus        28 ~G~~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          28 PGETVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            44589999999999999999998754

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=96.00  E-value=0.0062  Score=53.60  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|++||||||+.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (252)
T TIGR03005        25 AGEKVALIGPSGSGKSTILRILMTLE   50 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998654

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=96.00  E-value=0.0063  Score=53.49  Aligned_cols=26  Identities=27%  Similarity=0.233  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~   49 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVL   49 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999998754

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=96.00  E-value=0.0066  Score=52.47  Aligned_cols=27  Identities=26%  Similarity=0.278  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|+|+.||||||+.+.|+..+
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~   57 (226)
T cd03234          31 ESGQVMAILGSSGSGKTTLLDAISGRV   57 (226)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence            345689999999999999999998654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=96.00  E-value=0.006  Score=53.88  Aligned_cols=26  Identities=23%  Similarity=0.243  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+++.|+..+
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         31 PGEVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998754

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=96.00  E-value=0.0062  Score=53.90  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         38 KNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            45689999999999999999998654

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=96.00  E-value=0.0064  Score=53.06  Aligned_cols=26  Identities=27%  Similarity=0.286  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         26 QGEVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998654

>PRK10908 cell division protein FtsE; Provisional

Probab=95.99  E-value=0.0066  Score=52.32  Aligned_cols=26  Identities=23%  Similarity=0.220  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...+++|.|+.||||||+.+.|+..+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999997644

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=95.99  E-value=0.0063  Score=52.84  Aligned_cols=26  Identities=27%  Similarity=0.333  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (232)
T PRK10771         24 RGERVAILGPSGAGKSTLLNLIAGFL   49 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999997654

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.99  E-value=0.006  Score=51.89  Aligned_cols=27  Identities=19%  Similarity=0.284  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+..+
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (202)
T cd03233          31 KPGEMVLVLGRPGSGCSTLLKALANRT   57 (202)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHhcccC
Confidence            345689999999999999999997654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=95.98  E-value=0.0066  Score=52.73  Aligned_cols=26  Identities=27%  Similarity=0.231  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|+|+.||||||+.+.|+..+
T Consensus        10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184        10 QGEFISLIGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999998654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=95.98  E-value=0.0066  Score=52.08  Aligned_cols=26  Identities=15%  Similarity=0.130  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+.-+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            34589999999999999999997643

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=95.98  E-value=0.0067  Score=49.13  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~  106 (303)
                      .|+|.|.+|+||||+.++|..
T Consensus         2 ki~v~G~~~~GKTsli~~~~~   22 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQ   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            688999999999999999964

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=95.98  E-value=0.0066  Score=53.02  Aligned_cols=26  Identities=15%  Similarity=0.124  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998754

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=95.98  E-value=0.0059  Score=52.28  Aligned_cols=24  Identities=29%  Similarity=0.142  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+++|.|+.||||||+.+.|+..+
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~~   47 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGLE   47 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCCC
Confidence            689999999999999999997543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	303
1zak_A	222	Adenylate Kinase From Maize In Complex With The Inh		2e-92
3hpr_A	214	Crystal Structure Of V148g Adenylate Kinase From E.		4e-44
1ake_A	214	Structure Of The Complex Between Adenylate Kinase F		6e-44
1e4v_A	214	Mutant G10v Of Adenylate Kinase From E. Coli, Modif		6e-44
1e4y_A	214	Mutant P9l Of Adenylate Kinase From E. Coli, Modifi		1e-42
3dkv_A	217	Crystal Structure Of Adenylate Kinase Variant Aklse		1e-38
3gmt_A	230	Crystal Structure Of Adenylate Kinase From Burkhold		1e-38
1s3g_A	217	Crystal Structure Of Adenylate Kinase From Bacillus		1e-38
1zin_A	217	Adenylate Kinase With Bound Ap5a Length = 217		3e-37
2ori_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		4e-37
3dl0_A	216	Crystal Structure Of Adenylate Kinase Variant Aklse		4e-37
2oo7_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		5e-37
1p3j_A	217	Adenylate Kinase From Bacillus Subtilis Length = 21		9e-37
2qaj_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		1e-36
2eu8_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		1e-36
2p3s_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		1e-36
3be4_A	217	Crystal Structure Of Cryptosporidium Parvum Adenyla		2e-36
2osb_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		9e-36
3fb4_A	216	Crystal Structure Of Adenylate Kinase From Mariniba		1e-34
2rgx_A	206	Crystal Structure Of Adenylate Kinase From Aquifex		3e-34
2c9y_A	242	Structure Of Human Adenylate Kinase 2 Length = 242		5e-33
3adk_A	195	Refined Structure Of Porcine Cytosolic Adenylate Ki		2e-32
1z83_A	196	Crystal Structure Of Human Ak1a In Complex With Ap5		2e-32
1aky_A	220	High-Resolution Structures Of Adenylate Kinase From		3e-32
3aky_A	220	Stability, Activity And Structure Of Adenylate Kina		4e-32
1ak2_A	233	Adenylate Kinase Isoenzyme-2 Length = 233		1e-31
2ar7_A	246	Crystal Structure Of Human Adenylate Kinase 4, Ak4		8e-31
1dvr_A	220	Structure Of A Mutant Adenylate Kinase Ligated With		5e-30
2ak3_A	226	The Three-Dimensional Structure Of The Complex Betw		5e-30
1zd8_A	227	Structure Of Human Adenylate Kinase 3 Like 1 Length		3e-29
3ndp_A	231	Crystal Structure Of Human Ak4(L171p) Length = 231		6e-29
2bwj_A	199	Structure Of Adenylate Kinase 5 Length = 199		4e-26
3tlx_A	243	Crystal Structure Of Pf10_0086, Adenylate Kinase Fr		5e-26
3l0p_A	223	Crystal Structures Of Iron Containing Adenylate Kin		3e-25
2xb4_A	223	Crystal Structures Of Zinc Containing Adenylate Kin		4e-25
3umf_A	217	Schistosoma Mansoni Adenylate Kinase Length = 217		2e-24
1uky_A	203	Substrate Specificity And Assembly Of Catalytic Cen		3e-23
1p4s_A	181	Solution Structure Of Mycobacterium Tuberculosis Ad		7e-23
2cdn_A	201	Crystal Structure Of Mycobacterium Tuberculosis Ade		8e-23
1tev_A	196	Crystal Structure Of The Human UmpCMP KINASE IN OPE		6e-19
3cm0_A	186	Crystal Structure Of Adenylate Kinase From Thermus		1e-17
1qf9_A	194	Ph Influences Fluoride Coordination Number Of The A		4e-16

>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a) Length = 222

Iteration: 1
 Score =  335 bits (860), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 159/221 (71%), Positives = 188/221 (85%)
Query: 80  ATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK 139
           A  +PLK+MISGAPASGKGTQCELIK KY L HI+AGDLLRAEIAAGSENGKRAKE MEK
Sbjct: 1   ALADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEK 60
Query: 140 GQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPED 199
           GQLVPDEIVV MVKERL QPD+QENGWLLDGYPRS SQA AL+    +PD FILL+VP++
Sbjct: 61  GQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDE 120
Query: 200 TLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAV 259
            LVERVVGRRLDPVTGKIYH+KYSPPE +EIA+RLT+RFDDTEEKVKLRL+T++ N+E++
Sbjct: 121 LLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESL 180
Query: 260 LSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSALGS 300
           LS YE++ V+V G    + VFA+ID  L ++LE++   + S
Sbjct: 181 LSTYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMVSS 221

>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli, In Complex With Ap5a Length = 214

Iteration: 1
 Score =  174 bits (442), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 82/183 (44%), Positives = 127/183 (69%), Gaps = 5/183 (2%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           ++I++ GAP +GKGTQ + I EKYG+  I+ GD+LRA + +GSE GK+AK+ M+ G+LV 
Sbjct: 1   MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           DE+V+ +VKER++Q D + NG+LLDG+PR++ QA A+K+ G   D  +  +VP++ +V+R
Sbjct: 61  DELVIALVKERIAQEDCR-NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR 119
Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           +VGRR+   +G++YHVK++PP+     D     LT R DD EE V+ RL  +H     ++
Sbjct: 120 IVGRRVHAPSGRVYHVKFNPPKVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAPLI 179
Query: 261 SLY 263
             Y
Sbjct: 180 GYY 182

>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From Escherichia Coli And The Inhibitor Ap5a Refined At 1.9 Angstroms Resolution: A Model For A Catalytic Transition State Length = 214

Iteration: 1
 Score =  174 bits (441), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 82/183 (44%), Positives = 127/183 (69%), Gaps = 5/183 (2%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           ++I++ GAP +GKGTQ + I EKYG+  I+ GD+LRA + +GSE GK+AK+ M+ G+LV 
Sbjct: 1   MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           DE+V+ +VKER++Q D + NG+LLDG+PR++ QA A+K+ G   D  +  +VP++ +V+R
Sbjct: 61  DELVIALVKERIAQEDCR-NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR 119
Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           +VGRR+   +G++YHVK++PP+     D     LT R DD EE V+ RL  +H     ++
Sbjct: 120 IVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLI 179
Query: 261 SLY 263
             Y
Sbjct: 180 GYY 182

>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score =  174 bits (441), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 82/183 (44%), Positives = 127/183 (69%), Gaps = 5/183 (2%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           ++I++ GAP +GKGTQ + I EKYG+  I+ GD+LRA + +GSE GK+AK+ M+ G+LV 
Sbjct: 1   MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           DE+V+ +VKER++Q D + NG+LLDG+PR++ QA A+K+ G   D  +  +VP++ +V+R
Sbjct: 61  DELVIALVKERIAQEDCR-NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR 119
Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           +VGRR+   +G++YHVK++PP+     D     LT R DD EE V+ RL  +H     ++
Sbjct: 120 IVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLI 179
Query: 261 SLY 263
             Y
Sbjct: 180 GYY 182

>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 126/183 (68%), Gaps = 5/183 (2%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           ++I++ GA  +GKGTQ + I EKYG+  I+ GD+LRA + +GSE GK+AK+ M+ G+LV 
Sbjct: 1   MRIILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           DE+V+ +VKER++Q D + NG+LLDG+PR++ QA A+K+ G   D  +  +VP++ +V+R
Sbjct: 61  DELVIALVKERIAQEDCR-NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR 119
Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           +VGRR+   +G++YHVK++PP+     D     LT R DD EE V+ RL  +H     ++
Sbjct: 120 IVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLI 179
Query: 261 SLY 263
             Y
Sbjct: 180 GYY 182

>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1 Length = 217

Iteration: 1
 Score =  157 bits (396), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/216 (40%), Positives = 134/216 (62%), Gaps = 11/216 (5%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + I++ G P +GKGTQ E I EKYG+ HI+ GD+ RA +   +  G  AK +++KG+LVP
Sbjct: 1   MNIVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDT 200
           DE+ + +V+ERLS+ D  E G+LLDG+PR+++Q       L++ G   D  I ++V ++ 
Sbjct: 61  DEVTIGIVRERLSKSDC-ERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEE 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
           L+ER+ GRR+  V G  YH+ ++PP+T    D+    L +R DD EE V  RL+ +    
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQT 179
Query: 257 EAVLSLYE--DVTVEVNGSVNKEDVFAQIDVALTNL 290
             +L+ Y+  +V V VNG  + +DVFA + V L  L
Sbjct: 180 APLLAFYDSKEVLVNVNGQQDIQDVFADVKVILGGL 215

>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia Pseu Length = 230

Iteration: 1
 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/184 (41%), Positives = 119/184 (64%), Gaps = 5/184 (2%)
Query: 86  KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD 145
           ++++ GAP +GKGTQ   IKEK+G+  I+ GD LRA + AG+  G  AK + ++G+LVPD
Sbjct: 10  RLILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPD 69
Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV 205
            +++ +VKERL + D   NG+L DG+PR+++QA A K+ G   D  + ++VP   ++ER 
Sbjct: 70  SLIIGLVKERLKEADCA-NGYLFDGFPRTIAQADAXKEAGVAIDYVLEIDVPFSEIIERX 128
Query: 206 VGRRLDPVTGKIYHVKYSPPET---DEIAAR-LTKRFDDTEEKVKLRLKTHHHNVEAVLS 261
            GRR  P +G+ YHVK++PP+    D++    L +R DD EE VK RL  +    + +++
Sbjct: 129 SGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLIT 188
Query: 262 LYED 265
            Y D
Sbjct: 189 YYGD 192

>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus Globisporus Length = 217

Iteration: 1
 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/213 (38%), Positives = 133/213 (62%), Gaps = 11/213 (5%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + I++ G P +GKGTQ + I EKYG  HI+ GD+ RA I  G+E G +AK  M++G LVP
Sbjct: 1   MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDT 200
           DE+ + +V+ERLS+ D  +NG+LLDG+PR++ QA AL +     G + +  + ++V ++ 
Sbjct: 61  DEVTIGIVRERLSKSDC-DNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEE 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPE----TDEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
           L+ R+ GRR+  V G  YH+ ++PP+     D+    L +R DD  + V  RL+ + +  
Sbjct: 120 LIARLTGRRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQT 179
Query: 257 EAVLSLYE--DVTVEVNGSVNKEDVFAQIDVAL 287
             +L+ Y+  +V V +NG  + +DVF  +DV L
Sbjct: 180 APLLAFYDSKEVLVNINGQKDIKDVFKDLDVIL 212

>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a Length = 217

Iteration: 1
 Score =  152 bits (383), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 128/216 (59%), Gaps = 11/216 (5%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + +++ G P +GKGTQ E I   YG+ HI+ GD+ RA +  G+  G +AK++M++G LVP
Sbjct: 1   MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALK----KYGFQPDLFILLEVPEDT 200
           DE+ + +V+ERLS+ D Q NG+LLDG+PR+++QA AL+      G + D  I ++V +D 
Sbjct: 61  DEVTIGIVRERLSKDDCQ-NGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPE----TDEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
           L+ER+ GRR+    G  YH+ + PP      D+    L +R DD E  V  RL+ +   +
Sbjct: 120 LMERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQM 179
Query: 257 EAVLSLYEDVTV--EVNGSVNKEDVFAQIDVALTNL 290
           + ++  YE       +NG  + E VFA I   L  L
Sbjct: 180 KPLVDFYEQKGYLRNINGEQDMEKVFADIRELLGGL 215

>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (A193vQ199R) Length = 216

Iteration: 1
 Score =  151 bits (382), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 85/216 (39%), Positives = 130/216 (60%), Gaps = 11/216 (5%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + +++ G P +GKGTQ E I E YG+ HI+ GD+ RA +   +  G  AK +++KG+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDT 200
           DE+ + +VKERL + D  E G+LLDG+PR+++Q       L++YG   D  I +EV +D 
Sbjct: 61  DEVTIGIVKERLGKDDC-ERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
           L+ER+ GRR+  V G  YH+ ++PP+T    D+    L +R DD EE V  RL+ +    
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQT 179
Query: 257 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNL 290
           + +L  Y +    V VNG  + +DV+A +   L  L
Sbjct: 180 QPLLDFYSEKGYLVNVNGQRDIQDVYADVKDLLGGL 215

>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3 Length = 216

Iteration: 1
 Score =  151 bits (382), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 85/216 (39%), Positives = 131/216 (60%), Gaps = 11/216 (5%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + +++ G P +GKGTQ E I EKYG+ HI+ GD+ RA +   +  G  AK +++KG+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDT 200
           DE+ + +VKERL + D  E G+LLDG+PR+++Q       L++ G   D  I ++V +D 
Sbjct: 61  DEVTIGIVKERLGKDDC-ERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
           L+ER+ GRR+  V G  YH+ ++PP+T    D+    L +R DD EE V  RL+ +    
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQT 179
Query: 257 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNL 290
             +L  Y++    V VNG  + +DV+A + V L  L
Sbjct: 180 APLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGGL 215

>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (T179iQ199R) Length = 217

Iteration: 1
 Score =  151 bits (381), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 130/216 (60%), Gaps = 11/216 (5%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + +++ G P +GKGTQ E I E YG+ HI+ GD+ RA +   +  G  AK +++KG+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDT 200
           DE+ + +VKERL + D  E G+LLDG+PR+++Q       L++YG   D  I +EV +D 
Sbjct: 61  DEVTIGIVKERLGKDDC-ERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
           L+ER+ GRR+  V G  YH+ ++PP+T    D+    L +R DD EE V  RL+ +   +
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQI 179
Query: 257 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNL 290
           + +L  Y +      VNG  + +DV+A +   L  L
Sbjct: 180 QPLLDFYSEKGYLANVNGQRDIQDVYADVKDLLGGL 215

>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis Length = 217

Iteration: 1
 Score =  150 bits (379), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 129/216 (59%), Gaps = 11/216 (5%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + +++ G P +GKGTQ E I E YG+ HI+ GD+ RA +   +  G  AK +++KG+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDT 200
           DE+ + +VKERL + D  E G+LLDG+PR+++Q       L++YG   D  I +EV +D 
Sbjct: 61  DEVTIGIVKERLGKDDC-ERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
           L+ER+ GRR+  V G  YH+ ++PP+T    D+    L +R DD EE V  RL+ +    
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQT 179
Query: 257 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNL 290
           + +L  Y +      VNG  + +DV+A +   L  L
Sbjct: 180 QPLLDFYSEKGYLANVNGQQDIQDVYADVKDLLGGL 215

>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199rG213E) Length = 217

Iteration: 1
 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 129/216 (59%), Gaps = 11/216 (5%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + +++ G P +GKGTQ E I E YG+ HI+ GD+ RA +   +  G  AK +++KG+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDT 200
           DE+ + +VKERL + D  E G+LLDG+PR+++Q       L++YG   D  I +EV +D 
Sbjct: 61  DEVTIGIVKERLGKDDC-ERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
           L+ER+ GRR+  V G  YH+ ++PP+T    D+    L +R DD EE V  RL+ +    
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQT 179
Query: 257 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNL 290
           + +L  Y +      VNG  + +DV+A +   L  L
Sbjct: 180 QPLLDFYSEKGYLANVNGQRDIQDVYADVKDLLEGL 215

>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199r) Length = 216

Iteration: 1
 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 129/216 (59%), Gaps = 11/216 (5%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + +++ G P +GKGTQ E I E YG+ HI+ GD+ RA +   +  G  AK +++KG+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDT 200
           DE+ + +VKERL + D  E G+LLDG+PR+++Q       L++YG   D  I +EV +D 
Sbjct: 61  DEVTIGIVKERLGKDDC-ERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
           L+ER+ GRR+  V G  YH+ ++PP+T    D+    L +R DD EE V  RL+ +    
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQT 179
Query: 257 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNL 290
           + +L  Y +      VNG  + +DV+A +   L  L
Sbjct: 180 QPLLDFYSEKGYLANVNGQRDIQDVYADVKDLLGGL 215

>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (G214rQ199R) Length = 217

Iteration: 1
 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 129/216 (59%), Gaps = 11/216 (5%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + +++ G P +GKGTQ E I E YG+ HI+ GD+ RA +   +  G  AK +++KG+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDT 200
           DE+ + +VKERL + D  E G+LLDG+PR+++Q       L++YG   D  I +EV +D 
Sbjct: 61  DEVTIGIVKERLGKDDC-ERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
           L+ER+ GRR+  V G  YH+ ++PP+T    D+    L +R DD EE V  RL+ +    
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQT 179
Query: 257 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNL 290
           + +L  Y +      VNG  + +DV+A +   L  L
Sbjct: 180 QPLLDFYSEKGYLANVNGQRDIQDVYADVKDLLGRL 215

>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate Kinase Cgd5_3360 Length = 217

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/207 (40%), Positives = 121/207 (58%), Gaps = 11/207 (5%)
Query: 87  IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
           +++ GAP SGKGTQCE IK++YGL H++ GD+LR  I  G++ G  AK  +E G  V DE
Sbjct: 8   LILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDE 67
Query: 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLV 202
           IV+ +VKE+        NG++LDG+PR++ QA  L K     G      I  E+ +  ++
Sbjct: 68  IVLGLVKEKFDL-GVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEII 126
Query: 203 ERVVGRRLDPVTGKIYHVKYSPPE---TDEIAAR-LTKRFDDTEEKVKLRLKTHHHNVEA 258
           ER+ GR   P +G+IYHVKY+PP+    D++    L  R DD  E VK+RL   H     
Sbjct: 127 ERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAP 186
Query: 259 VLSLYEDVTV--EVNGSVNKEDVFAQI 283
           ++  YED+ +   VN  +  ++V  QI
Sbjct: 187 LVKFYEDLGILKRVNAKLPPKEVTEQI 213

>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (q16l/q199r/) Length = 216

Iteration: 1
 Score =  147 bits (370), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 128/216 (59%), Gaps = 11/216 (5%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + +++ G P +GKGT  E I E YG+ HI+ GD+ RA +   +  G  AK +++KG+LVP
Sbjct: 1   MNLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDT 200
           DE+ + +VKERL + D  E G+LLDG+PR+++Q       L++YG   D  I +EV +D 
Sbjct: 61  DEVTIGIVKERLGKDDC-ERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
           L+ER+ GRR+  V G  YH+ ++PP+T    D+    L +R DD EE V  RL+ +    
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQT 179
Query: 257 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNL 290
           + +L  Y +      VNG  + +DV+A +   L  L
Sbjct: 180 QPLLDFYSEKGYLANVNGQRDIQDVYADVKDLLGGL 215

>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus Marinus Length = 216

Iteration: 1
 Score =  143 bits (361), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 126/216 (58%), Gaps = 11/216 (5%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + I++ G P +GKGTQ E I EKY + HI+ GD+ RA I  G+E G +AK  M++G LVP
Sbjct: 1   MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALK----KYGFQPDLFILLEVPEDT 200
           DE+ + +V ERLS+ D Q+ G+LLDG+PR+++QA AL       G + D  + ++V ++ 
Sbjct: 61  DEVTIGIVHERLSKDDCQK-GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEE 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPETDEI----AARLTKRFDDTEEKVKLRLKTHHHNV 256
           L++R+ GR +    G  YH  ++PP  + I       L +R DD  E VK RL  +    
Sbjct: 120 LMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQT 179
Query: 257 EAVLSLY--EDVTVEVNGSVNKEDVFAQIDVALTNL 290
           + +L  Y  + V  +++G  + + VF  I+  L  L
Sbjct: 180 QPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGGL 215

>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex Aeolicus In Complex With Ap5a Length = 206

Iteration: 1
 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 126/203 (62%), Gaps = 13/203 (6%)
Query: 87  IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
           ++  G P +GKGTQ + + ++ G VHI+ GD+LR  +  G+  GK+AKE+ME+G+LVPD+
Sbjct: 3   LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDD 62
Query: 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA----LKKYGFQPDLFILLEVPEDTLV 202
           +++ +++E       +    + DG+PR++ QA A    L+K G + D  +L EVP++ ++
Sbjct: 63  LIIALIEEVF----PKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVI 118
Query: 203 ERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSL 262
           ER+ GRR++P TG++YHVKY+PP       ++ +R DD  E +K RL+ +      ++  
Sbjct: 119 ERLSGRRINPETGEVYHVKYNPPPP---GVKVIQREDDKPEVIKKRLEVYREQTAPLIEY 175
Query: 263 YEDVTVE--VNGSVNKEDVFAQI 283
           Y+   +   ++ S   E+V+ Q+
Sbjct: 176 YKKKGILRIIDASKPVEEVYRQV 198

>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2 Length = 242

Iteration: 1
 Score =  138 bits (347), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 75/215 (34%), Positives = 127/215 (59%), Gaps = 11/215 (5%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           ++ ++ G P +GKGTQ   + E + + H+A GD+LRA +A+GSE GK+ K  M+ G+LV 
Sbjct: 17  IRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVS 76
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFILLEVPEDT 200
           DE+VV ++++ L  P  + NG+LLDG+PR++ QA  L    +K   + D  I   +P+  
Sbjct: 77  DEMVVELIEKNLETPLCK-NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSL 135
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPE---TDEIAAR-LTKRFDDTEEKVKLRLKTHHHNV 256
           L+ R+ GR + P +G+ YH +++PP+    D+I    L +R DD E+ +K+RL+ +H   
Sbjct: 136 LIRRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQT 195
Query: 257 EAVLSLYEDVTVE--VNGSVNKEDVFAQIDVALTN 289
             ++  Y    +   ++ S   + VFA I  A + 
Sbjct: 196 TPLIEYYRKRGIHSAIDASQTPDVVFASILAAFSK 230

>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At 2.1 Angstroms Resolution Length = 195

Iteration: 1
 Score =  136 bits (342), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 112/206 (54%), Gaps = 25/206 (12%)
Query: 87  IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
           I + G P SGKGTQCE I +KYG  H++ GDLLRAE+++GS  GK   E MEKGQLVP E
Sbjct: 12  IFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLE 71
Query: 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV 206
            V+ M+++ +        G+L+DGYPR + Q    ++   QP L + ++   +T+ +R++
Sbjct: 72  TVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLL 131
Query: 207 GRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED- 265
            R                          + R DD EE +K RL+T++   E V++ YE  
Sbjct: 132 KR-----------------------GETSGRVDDNEETIKKRLETYYKATEPVIAFYEKR 168
Query: 266 -VTVEVNGSVNKEDVFAQIDVALTNL 290
            +  +VN   + +DVF+Q+   L  L
Sbjct: 169 GIVRKVNAEGSVDDVFSQVCTHLDTL 194

>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a Length = 196

Iteration: 1
 Score =  136 bits (342), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 114/207 (55%), Gaps = 25/207 (12%)
Query: 87  IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
           I + G P SGKGTQCE I +KYG  H++ GDLLR+E+++GS  GK+  E MEKGQLVP E
Sbjct: 12  IFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLE 71
Query: 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV 206
            V+ M+++ +    +   G+L+DGYPR + Q    ++   QP L + ++   +T+ +R++
Sbjct: 72  TVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLL 131
Query: 207 GRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED- 265
            R                          + R DD EE +K RL+T++   E V++ YE  
Sbjct: 132 KR-----------------------GETSGRVDDNEETIKKRLETYYKATEPVIAFYEKR 168
Query: 266 -VTVEVNGSVNKEDVFAQIDVALTNLL 291
            +  +VN   + + VF+Q+   L  LL
Sbjct: 169 GIVRKVNAEGSVDSVFSQVCTHLDALL 195

>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast Ligated With Inhibitor Ap5a, Showing The Pathway Of Phosphoryl Transfer Length = 220

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 126/211 (59%), Gaps = 10/211 (4%)
Query: 83  EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL 142
           E +++++ G P +GKGTQ   ++E++   H+A GD+LR++IA G++ G  AK+ M++G L
Sbjct: 3   ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGL 62
Query: 143 VPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQA----TALKKYGFQPDLFILLEVPE 198
           V D+I+V M+K+ L+   + +NG++LDG+PR++ QA      LK+ G   +  I L+V +
Sbjct: 63  VSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDD 122
Query: 199 DTLVERVVGRRLDPVTGKIYHVKYSPPETDE----IAARLTKRFDDTEEKVKLRLKTHHH 254
           + LV R+ GR + P +G+ YH  ++PP+ D         L +R DD  + +K RL  +H 
Sbjct: 123 ELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHA 182
Query: 255 NVEAVLSLYEDVTVE--VNGSVNKEDVFAQI 283
             E ++  Y+   +   V+ S     V+A I
Sbjct: 183 QTEPIVDFYKKTGIWAGVDASQPPATVWADI 213

>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase Mutants Length = 220

Iteration: 1
 Score =  134 bits (338), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 119/194 (61%), Gaps = 8/194 (4%)
Query: 83  EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL 142
           E +++++ G P +GKGTQ   ++E++   H+A GD+LR++IA G++ G  AK+ M++G L
Sbjct: 3   ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGL 62
Query: 143 VPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQA----TALKKYGFQPDLFILLEVPE 198
           V D+I+V M+K+ L+   + +NG++LDG+PR++ QA      LK+ G   +  I L+V +
Sbjct: 63  VSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDD 122
Query: 199 DTLVERVVGRRLDPVTGKIYHVKYSPPETDE----IAARLTKRFDDTEEKVKLRLKTHHH 254
           + LV R+ GR + P +G+ YH  ++PP+ D         L +R DD  + +K RL  +H 
Sbjct: 123 ELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHA 182
Query: 255 NVEAVLSLYEDVTV 268
             E ++  Y+   +
Sbjct: 183 QTEPIVDFYKKTGI 196

>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2 Length = 233

Iteration: 1
 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 127/214 (59%), Gaps = 11/214 (5%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           ++ ++ G P +GKGTQ   + + + + H+A GD+LRA +A+GSE GK+ K  M+ G+LV 
Sbjct: 17  VRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVS 76
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFILLEVPEDT 200
           DE+V+ ++++ L  P  + NG+LLDG+PR++ QA  L    +K   + D  I   +P+  
Sbjct: 77  DEMVLELIEKNLETPPCK-NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSL 135
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPE---TDEIAAR-LTKRFDDTEEKVKLRLKTHHHNV 256
           L+ R+ GR + P +G+ YH +++PP+    D+I    L +R DD ++ +K+RL+ +H   
Sbjct: 136 LIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQT 195
Query: 257 EAVLSLYEDVTVE--VNGSVNKEDVFAQIDVALT 288
             ++  Y    +   ++ S   + VFA I  A +
Sbjct: 196 TPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS 229

>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4 Length = 246

Iteration: 1
 Score =  130 bits (327), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 117/200 (58%), Gaps = 10/200 (5%)
Query: 69  TNSANFQVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSE 128
           T +  FQ +AS     L+ +I G P SGKGT C+ I + +GL H+++G  LR  I A +E
Sbjct: 15  TENLYFQSMASKL---LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTE 71
Query: 129 NGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQP 188
            G+ AK+++EK  LVPD ++  ++   L     Q   WLLDG+PR+L QA AL K   + 
Sbjct: 72  VGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQH--WLLDGFPRTLGQAEALDKI-CEV 128
Query: 189 DLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPET---DEIAAR-LTKRFDDTEEK 244
           DL I L +P +TL +R+  R + P +G++Y++ ++PP     D++    L ++ DD  E 
Sbjct: 129 DLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEA 188
Query: 245 VKLRLKTHHHNVEAVLSLYE 264
           V  RL+ +    + V+ LY+
Sbjct: 189 VAARLRQYKDVAKPVIELYK 208

>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An Atp- Analogue Showing Domain Closure Over Atp Length = 220

Iteration: 1
 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 124/211 (58%), Gaps = 10/211 (4%)
Query: 83  EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL 142
           E +++++ G P +GKGTQ   ++E++   H+A GD+LR++IA G++ G  AK+ M++G L
Sbjct: 3   ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGL 62
Query: 143 VPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQA----TALKKYGFQPDLFILLEVPE 198
           V D+I+V M+K+ L+   + +NG++L G+PR++ QA      LK+ G   +  I L+V +
Sbjct: 63  VSDDIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDD 122
Query: 199 DTLVERVVGRRLDPVTGKIYHVKYSPPETDE----IAARLTKRFDDTEEKVKLRLKTHHH 254
           + LV R+ GR + P +G+ YH  ++PP+ D         L +  DD  + +K RL  +H 
Sbjct: 123 ELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHA 182
Query: 255 NVEAVLSLYEDVTVE--VNGSVNKEDVFAQI 283
             E ++  Y+   +   V+ S     V+A I
Sbjct: 183 QTEPIVDFYKKTGIWAGVDASQPPATVWADI 213

>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between Mitochondrial Matrix Adenylate Kinase And Its Substrate Amp At 1.85 Angstroms Resolution Length = 226

Iteration: 1
 Score =  127 bits (320), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 8/221 (3%)
Query: 79  SATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHME 138
            A+   L+  I GAP SGKGT    I + + L H+++GDLLR  +  G+E G  AK  ++
Sbjct: 1   GASARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFID 60
Query: 139 KGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPE 198
           +G+L+PD+++  +V   L   +  +  WLLDG+PR+L QA AL +  +Q D  I L VP 
Sbjct: 61  QGKLIPDDVMTRLVLHELK--NLTQYNWLLDGFPRTLPQAEALDR-AYQIDTVINLNVPF 117
Query: 199 DTLVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHH 254
           + + +R+  R + P +G++Y+++++PP+T    D     L +R DD  E V  RLK +  
Sbjct: 118 EVIKQRLTARWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEA 177
Query: 255 NVEAVLSLYEDVTV-EVNGSVNKEDVFAQIDVALTNLLEQR 294
             E VL  Y    V E         ++  +   L   L QR
Sbjct: 178 QTEPVLEYYRKKGVLETFSGTETNKIWPHVYAFLQTKLPQR 218

>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1 Length = 227

Iteration: 1
 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 110/189 (58%), Gaps = 7/189 (3%)
Query: 80  ATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK 139
           A+   L+ +I GAP SGKGT    I   + L H+++GDLLR  +  G+E G  AK  +++
Sbjct: 3   ASARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQ 62
Query: 140 GQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPED 199
           G+L+PD+++  +    L   +  +  WLLDG+PR+L QA AL +  +Q D  I L VP +
Sbjct: 63  GKLIPDDVMTRLALHELK--NLTQYSWLLDGFPRTLPQAEALDR-AYQIDTVINLNVPFE 119
Query: 200 TLVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHN 255
            + +R+  R + P +G++Y+++++PP+T    D     L +R DD  E V  RLK +   
Sbjct: 120 VIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQ 179
Query: 256 VEAVLSLYE 264
            + VL  Y+
Sbjct: 180 TKPVLEYYQ 188

>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p) Length = 231

Iteration: 1
 Score =  124 bits (311), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 107/184 (58%), Gaps = 7/184 (3%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           L+ +I G P SGKGT C+ I + +GL H+++G  LR  I A +E G+ AK+++EK  LVP
Sbjct: 6   LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVP 65
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           D ++  ++   L     Q   WLLDG+PR+L QA AL K   + DL I L +P +TL +R
Sbjct: 66  DHVITRLMMSELENRRGQH--WLLDGFPRTLGQAEALDKI-CEVDLVISLNIPFETLKDR 122
Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           +  R + P +G++Y++ ++PP      D     L ++ DD  E V  R + +    + V+
Sbjct: 123 LSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARPRQYKDVAKPVI 182
Query: 261 SLYE 264
            LY+
Sbjct: 183 ELYK 186

>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5 Length = 199

Iteration: 1
 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 104/207 (50%), Gaps = 25/207 (12%)
Query: 87  IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
           I I G P SGKGTQCE + EKYG  H++ G+LLR E+A+ SE  K  ++ ME+G LVP  
Sbjct: 15  IFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSG 74
Query: 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV 206
           IV+ ++KE +        G+L+DGYPR + Q     +    P L I ++   DT+  R++
Sbjct: 75  IVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLL 134
Query: 207 GRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDV 266
                                    +R +   DDT + +  RL+ ++     V++ YE  
Sbjct: 135 Q-----------------------MSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETK 171
Query: 267 TV--EVNGSVNKEDVFAQIDVALTNLL 291
           T   ++N     EDVF Q+  A+ ++ 
Sbjct: 172 TQLHKINAEGTPEDVFLQLCTAIDSIF 198

>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From Plasmodium Falciparum Length = 243

Iteration: 1
 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 111/194 (57%), Gaps = 9/194 (4%)
Query: 86  KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD 145
           + +  GAP SGKGTQ   +K+ +   H++ GDLLR      +E G + K  + +G+LV D
Sbjct: 31  RYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDD 90
Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQA----TALKKYGFQPDLFILLEVPEDTL 201
           ++V+++V E+L  P  ++ G++LDGYPR++ QA      L+K   + D      VP++ L
Sbjct: 91  QMVLSLVDEKLKTPQCKK-GFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVL 149
Query: 202 VERVVGRRLDPVTGKIYHVKYSPPET---DEIAAR-LTKRFDDTEEKVKLRLKTHHHNVE 257
           V R+ GR +   +G+IYH  ++PP+    D++    L +R DD E+ +K RL        
Sbjct: 150 VNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETS 209
Query: 258 AVLSLYEDVTVEVN 271
            ++S Y++  + +N
Sbjct: 210 PLISYYKNKNLLIN 223

>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 104/188 (55%), Gaps = 13/188 (6%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + I+I G   SGKGTQ  L+K+KY L HI +G + R  I  G+E GK+AKE +++G LVP
Sbjct: 1   MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQAT----ALKKYGFQPDLFILLEVPEDT 200
           D+I + MV E L      ++GWLLDG+PR+  QA     AL++ G + +  I + +P + 
Sbjct: 61  DDITIPMVLETLES--KGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREV 118
Query: 201 LVERVVGRRL---DPVTGKIYHVKYSPPETD---EIAARLTKRFDDTEE-KVKLRLKTHH 253
              R++GRR+   +P       ++   P  D        L+ R DD +E  +  R   ++
Sbjct: 119 AKNRIMGRRICKNNPNHPNNIFIEAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYY 178
Query: 254 HNVEAVLS 261
           + V+  L+
Sbjct: 179 NTVDGTLA 186

>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 13/188 (6%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + I+I G   SGKGTQ  L+K+KY L HI +G + R  I  G+E GK+AKE +++G LVP
Sbjct: 1   MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQAT----ALKKYGFQPDLFILLEVPEDT 200
           D+I + MV E L      ++GWLLDG+PR+  QA     AL++ G + +  I + +P + 
Sbjct: 61  DDITIPMVLETLES--KGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREV 118
Query: 201 LVERVVGRRL---DPVTGKIYHVKYSPPETD---EIAARLTKRFDDTEE-KVKLRLKTHH 253
              R++GRR+   +P       +    P  D        L+ R DD +E  +  R   ++
Sbjct: 119 AKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYY 178
Query: 254 HNVEAVLS 261
           + V+  L+
Sbjct: 179 NTVDGTLA 186

>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase Length = 217

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 107/205 (52%), Gaps = 31/205 (15%)
Query: 75  QVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAK 134
           Q LA A V    I + G P SGKGTQCE + +K+   H+++GDLLRAE+ +GS  GK  K
Sbjct: 24  QKLAKAKV----IFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELK 79
Query: 135 EHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILL 194
             ME+G+LVP E+V+ ++KE + +   +   +L+DGYPR L Q    +K        I  
Sbjct: 80  AMMERGELVPLEVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINF 139
Query: 195 EVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHH 254
           +V E+ + +R++ R                       A  + R DD EE +  R +T + 
Sbjct: 140 DVSEEVMRKRLLKR-----------------------AETSNRVDDNEETIVKRFRTFNE 176
Query: 255 NVEAVLSLYED----VTVEVNGSVN 275
             + V+  Y+     +T++ +G+V+
Sbjct: 177 LTKPVIEHYKQQNKVITIDASGTVD 201

>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center Derived From Two Structures Of Ligated Uridylate Kinase Length = 203

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 107/209 (51%), Gaps = 27/209 (12%)
Query: 87  IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA-AGSENGKRAKEHMEKGQLVPD 145
           I + G P +GKGTQCE + + Y  VH++AGDLLRAE   AGS+ G+  K  +++GQ+VP 
Sbjct: 18  IFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQ 77
Query: 146 EIVVTMVKERLSQP-DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           EI + +++  +S    + ++ +L+DG+PR + QA + ++   +    +  + PED ++ER
Sbjct: 78  EITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLER 137
Query: 205 VVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE 264
           ++ R                        + + R DD  E +K R  T       V+  +E
Sbjct: 138 LLER-----------------------GKTSGRSDDNIESIKKRFNTFKETSMPVIEYFE 174
Query: 265 DVT--VEVNGSVNKEDVFAQIDVALTNLL 291
             +  V V    + EDV+  +  A+ + L
Sbjct: 175 TKSKVVRVRCDRSVEDVYKDVQDAIRDSL 203

>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate Kinase Length = 181

Iteration: 1
 Score =  104 bits (259), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 32/202 (15%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           +++++ G P +GKGTQ   + EK G+  I+ G+L R  I  G++ G  AK +++ G LVP
Sbjct: 1   MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA----LKKYGFQPDLFILLEVPEDT 200
            ++   +V +RL+ PD+  NG++LDGYPRS+ QA A    L++ G   D  +   V E+ 
Sbjct: 61  SDLTNELVDDRLNNPDAA-NGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           L+ER+ GR                            R DDT++ +  R+K +      +L
Sbjct: 120 LLERLKGR---------------------------GRADDTDDVILNRMKVYRDETAPLL 152
Query: 261 SLYEDVTVEVNGSVNKEDVFAQ 282
             Y D    V+     ++VFA+
Sbjct: 153 EYYRDQLKTVDAVGTMDEVFAR 174

>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate Kinase Complexed With Two Molecules Of Adp And Mg Length = 201

Iteration: 1
 Score =  103 bits (258), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 32/202 (15%)
Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           +++++ G P +GKGTQ   + EK G+  I+ G+L R  I  G++ G  AK +++ G LVP
Sbjct: 21  MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 80
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA----LKKYGFQPDLFILLEVPEDT 200
            ++   +V +RL+ PD+  NG++LDGYPRS+ QA A    L++ G   D  +   V E+ 
Sbjct: 81  SDLTNELVDDRLNNPDAA-NGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEV 139
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           L+ER+ GR                            R DDT++ +  R+K +      +L
Sbjct: 140 LLERLKGR---------------------------GRADDTDDVILNRMKVYRDETAPLL 172
Query: 261 SLYEDVTVEVNGSVNKEDVFAQ 282
             Y D    V+     ++VFA+
Sbjct: 173 EYYRDQLKTVDAVGTMDEVFAR 194

>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN Conformation Length = 196

Iteration: 1
 Score = 91.3 bits (225), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 111/218 (50%), Gaps = 35/218 (16%)
Query: 82  VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA-GSENGKRAKEHMEKG 140
           ++PL + + G P +GKGTQC  I EKYG  H++AG+LLR E     S+ G+  ++++++G
Sbjct: 1   MKPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEG 60
Query: 141 QLVPDEIVVTMVKERLSQ---PDSQENGWLLDGYPRSLSQATALKKY--GFQPDLFIL-L 194
           ++VP EI ++++K  + Q    ++Q+N +L+DG+PR+        K   G     F+L  
Sbjct: 61  KIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFF 120
Query: 195 EVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHH 254
           +   +  +ER + R                        + + R DD  E ++ R++T+  
Sbjct: 121 DCNNEICIERCLER-----------------------GKSSGRSDDNRESLEKRIQTYLQ 157
Query: 255 NVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE 292
           + + ++ LYE++     G V K D    +D     +++
Sbjct: 158 STKPIIDLYEEM-----GKVKKIDASKSVDEVFDEVVQ 190

>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus Thermophilus Hb8 Length = 186

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 31/205 (15%)
Query: 87  IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
           ++  G P +GKGTQ   + ++ G   ++ GD+LR  +A G+  G+R +  ME+G LVPD+
Sbjct: 7   VIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDD 66
Query: 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV 206
           +++ +++E L++        + DG+PR+L+QA AL +        +L E           
Sbjct: 67  LILELIREELAER------VIFDGFPRTLAQAEALDR--------LLSE----------T 102
Query: 207 GRRLDPVTGKIYHVKYSPPETDEIAAR--LTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE 264
           G RL    G +            I  R  L  R DD EE V+ RL+ +    E ++  YE
Sbjct: 103 GTRL---LGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYE 159
Query: 265 --DVTVEVNGSVNKEDVFAQIDVAL 287
              V   V+G    ++V+A+I  AL
Sbjct: 160 ARGVLKRVDGLGTPDEVYARIRAAL 184

>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx Phosphoryl Transfer Transition State Analog In UmpCMP Kinase Length = 194

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 21/177 (11%)
Query: 83  EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL 142
           +P  + + G P SGKGTQC  I   +G VH++AGDLLR E  +GS++G+     ++ G++
Sbjct: 5   KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEI 64
Query: 143 VPDEIVVTMVKERLSQPDSQENGWLLDGYPR----SLSQATALKKYGFQPDLFILLEVPE 198
           VP  + V ++K  +    +Q   +L+DG+PR    + S    +K +       +  + PE
Sbjct: 65  VPSIVTVKLLKNAIDA--NQGKNFLVDGFPRNEENNNSWEENMKDF-VDTKFVLFFDCPE 121
Query: 199 DTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHN 255
           + + +R++ R              S   +D+    + KRF+     V+ +L   H+N
Sbjct: 122 EVMTQRLLKR------------GESSGRSDDNIESIKKRFNTFN--VQTKLVIDHYN 164

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	303
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	1e-108
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	5e-94
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	1e-93
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	2e-93
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	7e-92
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	2e-86
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	2e-85
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	3e-85
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	1e-83
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	1e-83
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	8e-83
2rgx_A	206	Adenylate kinase; transferase(phosphotransferase),	2e-82
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	3e-78
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	3e-75
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	3e-74
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	3e-69
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	3e-68
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	3e-67
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	6e-67
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	2e-64
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	3e-28
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	3e-23
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	2e-10
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	5e-09
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	5e-09
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	1e-08
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	3e-06
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	2e-05
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	8e-04

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Length = 222

 Score =  312 bits (802), Expect = e-108
 Identities = 159/221 (71%), Positives = 188/221 (85%)

Query: 80  ATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK 139
           A  +PLK+MISGAPASGKGTQCELIK KY L HI+AGDLLRAEIAAGSENGKRAKE MEK
Sbjct: 1   ALADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEK 60

Query: 140 GQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPED 199
           GQLVPDEIVV MVKERL QPD+QENGWLLDGYPRS SQA AL+    +PD FILL+VP++
Sbjct: 61  GQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDE 120

Query: 200 TLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAV 259
            LVERVVGRRLDPVTGKIYH+KYSPPE +EIA+RLT+RFDDTEEKVKLRL+T++ N+E++
Sbjct: 121 LLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESL 180

Query: 260 LSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSALGS 300
           LS YE++ V+V G    + VFA+ID  L ++LE++   + S
Sbjct: 181 LSTYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMVSS 221

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Length = 214

 Score =  276 bits (708), Expect = 5e-94
 Identities = 87/214 (40%), Positives = 137/214 (64%), Gaps = 12/214 (5%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           ++I++ GAP +GKGTQ + I EKYG+  I+ GD+LRA + +GSE GK+AK+ M+ G+LV 
Sbjct: 1   MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           DE+V+ +VKER++Q D   NG+LLDG+PR++ QA A+K+ G   D  +  +VP++ +V+R
Sbjct: 61  DELVIALVKERIAQEDC-RNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR 119

Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           +VGRR+   +G++YHVK++PP+     D     LT R DD EE V+ RL  +H     ++
Sbjct: 120 IVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLI 179

Query: 261 SLYED-------VTVEVNGSVNKEDVFAQIDVAL 287
             Y            +V+G+    +V A ++  L
Sbjct: 180 GYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Length = 246

 Score =  276 bits (708), Expect = 1e-93
 Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 10/245 (4%)

Query: 58  LRCRHRRSPQSTNSANFQVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117
           +   H  S             S   + L+ +I G P SGKGT C+ I + +GL H+++G 
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGH 60

Query: 118 LLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ 177
            LR  I A +E G+ AK+++EK  LVPD ++  ++   L         WLLDG+PR+L Q
Sbjct: 61  FLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR--GQHWLLDGFPRTLGQ 118

Query: 178 ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPET----DEIAAR 233
           A AL K   + DL I L +P +TL +R+  R + P +G++Y++ ++PP      D     
Sbjct: 119 AEALDK-ICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEP 177

Query: 234 LTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLL 291
           L ++ DD  E V  RL+ +    + V+ LY+   V  + +G+     ++  +    +N +
Sbjct: 178 LVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGT-ETNKIWPYVYTLFSNKI 236

Query: 292 EQRKS 296
              +S
Sbjct: 237 TPIQS 241

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 230

 Score =  275 bits (706), Expect = 2e-93
 Identities = 82/229 (35%), Positives = 135/229 (58%), Gaps = 18/229 (7%)

Query: 77  LASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEH 136
           +A      +++++ GAP +GKGTQ   IKEK+G+  I+ GD+LRA + AG+  G  AK +
Sbjct: 1   MAHHHHHHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTY 60

Query: 137 MEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEV 196
           M++G+LVPD +++ +VKERL + D   NG+L DG+PR+++QA A+K+ G   D  + ++V
Sbjct: 61  MDEGKLVPDSLIIGLVKERLKEADCA-NGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDV 119

Query: 197 PEDTLVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTH 252
           P   ++ER+ GRR  P +G+ YHVK++PP+     D     L +R DD EE VK RL  +
Sbjct: 120 PFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVY 179

Query: 253 HHNVEAVLSLYED-------------VTVEVNGSVNKEDVFAQIDVALT 288
               + +++ Y D                +++G    E++ A++  A  
Sbjct: 180 EAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQV 228

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Length = 227

 Score =  271 bits (695), Expect = 7e-92
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 10/225 (4%)

Query: 79  SATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHME 138
            A+   L+ +I GAP SGKGT    I   + L H+++GDLLR  +  G+E G  AK  ++
Sbjct: 2   GASARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFID 61

Query: 139 KGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPE 198
           +G+L+PD+++  +    L      +  WLLDG+PR+L QA AL +  +Q D  I L VP 
Sbjct: 62  QGKLIPDDVMTRLALHELKNLT--QYSWLLDGFPRTLPQAEALDR-AYQIDTVINLNVPF 118

Query: 199 DTLVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHH 254
           + + +R+  R + P +G++Y+++++PP+T    D     L +R DD  E V  RLK +  
Sbjct: 119 EVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYED 178

Query: 255 NVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLLEQRKSA 297
             + VL  Y+   V    +G+     ++  +   L   + QR   
Sbjct: 179 QTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTKVPQRSQK 222

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Length = 220

 Score =  257 bits (658), Expect = 2e-86
 Identities = 74/217 (34%), Positives = 128/217 (58%), Gaps = 10/217 (4%)

Query: 81  TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKG 140
           + E +++++ G P +GKGTQ   ++E++   H+A GD+LR++IA G++ G  AK+ M++G
Sbjct: 1   SSESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQG 60

Query: 141 QLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFILLEV 196
            LV D+I+V M+K+ L+   + +NG++LDG+PR++ QA  L    K+ G   +  I L+V
Sbjct: 61  GLVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKV 120

Query: 197 PEDTLVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTH 252
            ++ LV R+ GR + P +G+ YH  ++PP+     D     L +R DD  + +K RL  +
Sbjct: 121 DDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAY 180

Query: 253 HHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 287
           H   E ++  Y+   +   V+ S     V+A I   L
Sbjct: 181 HAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKL 217

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Length = 217

 Score =  254 bits (652), Expect = 2e-85
 Identities = 83/218 (38%), Positives = 120/218 (55%), Gaps = 11/218 (5%)

Query: 80  ATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK 139
              +   +++ GAP SGKGTQCE IK++YGL H++ GD+LR  I  G++ G  AK  +E 
Sbjct: 1   GNSKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIES 60

Query: 140 GQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFILLE 195
           G  V DEIV+ +VKE+        NG++LDG+PR++ QA  L     + G      I  E
Sbjct: 61  GNFVGDEIVLGLVKEKFDLGVCV-NGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFE 119

Query: 196 VPEDTLVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKT 251
           + +  ++ER+ GR   P +G+IYHVKY+PP+     D     L  R DD  E VK+RL  
Sbjct: 120 IDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDV 179

Query: 252 HHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 287
            H     ++  YED  +   VN  +  ++V  QI   L
Sbjct: 180 FHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Length = 243

 Score =  254 bits (652), Expect = 3e-85
 Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 11/221 (4%)

Query: 77  LASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEH 136
            A  +    + +  GAP SGKGTQ   +K+ +   H++ GDLLR      +E G + K  
Sbjct: 22  YACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNI 81

Query: 137 MEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFI 192
           + +G+LV D++V+++V E+L  P  +  G++LDGYPR++ QA  L    +K   + D   
Sbjct: 82  INEGKLVDDQMVLSLVDEKLKTPQCK-KGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVF 140

Query: 193 LLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLR 248
              VP++ LV R+ GR +   +G+IYH  ++PP+     D     L +R DD E+ +K R
Sbjct: 141 YFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKR 200

Query: 249 LKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 287
           L         ++S Y++  + + ++ +    D+  +I   +
Sbjct: 201 LTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHI 241

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Length = 216

 Score =  250 bits (640), Expect = 1e-83
 Identities = 86/216 (39%), Positives = 133/216 (61%), Gaps = 11/216 (5%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + +++ G P +GKGTQ E I EKYG+ HI+ GD+ RA +   +  G  AK +++KG+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFILLEVPEDT 200
           DE+ + +VKERL + D +  G+LLDG+PR+++QA AL    ++ G   D  I ++V +D 
Sbjct: 61  DEVTIGIVKERLGKDDCE-RGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDV 119

Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
           L+ER+ GRR+  V G  YH+ ++PP+T    D+    L +R DD EE V  RL+ +    
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQT 179

Query: 257 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNL 290
             +L  Y++    V VNG  + +DV+A + V L  L
Sbjct: 180 APLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGGL 215

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Length = 216

 Score =  249 bits (639), Expect = 1e-83
 Identities = 81/216 (37%), Positives = 124/216 (57%), Gaps = 11/216 (5%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + I++ G P +GKGTQ E I EKY + HI+ GD+ RA I  G+E G +AK  M++G LVP
Sbjct: 1   MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVP 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFILLEVPEDT 200
           DE+ + +V ERLS+ D Q  G+LLDG+PR+++QA AL       G + D  + ++V ++ 
Sbjct: 61  DEVTIGIVHERLSKDDCQ-KGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEE 119

Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
           L++R+ GR +    G  YH  ++PP      D+    L +R DD  E VK RL  +    
Sbjct: 120 LMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQT 179

Query: 257 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNL 290
           + +L  Y    V  +++G  + + VF  I+  L  L
Sbjct: 180 QPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGGL 215

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Length = 233

 Score =  248 bits (636), Expect = 8e-83
 Identities = 71/220 (32%), Positives = 126/220 (57%), Gaps = 11/220 (5%)

Query: 78  ASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHM 137
              + + ++ ++ G P +GKGTQ   + + + + H+A GD+LRA +A+GSE GK+ K  M
Sbjct: 10  VPESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATM 69

Query: 138 EKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFIL 193
           + G+LV DE+V+ ++++ L  P  + NG+LLDG+PR++ QA  L    +K   + D  I 
Sbjct: 70  DAGKLVSDEMVLELIEKNLETPPCK-NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIE 128

Query: 194 LEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRL 249
             +P+  L+ R+ GR + P +G+ YH +++PP+     D     L +R DD ++ +K+RL
Sbjct: 129 FSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRL 188

Query: 250 KTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 287
           + +H     ++  Y    +   ++ S   + VFA I  A 
Sbjct: 189 EAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAF 228

>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, nucleo binding, transferase; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A Length = 206

 Score =  246 bits (631), Expect = 2e-82
 Identities = 71/210 (33%), Positives = 128/210 (60%), Gaps = 13/210 (6%)

Query: 86  KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD 145
            ++  G P +GKGTQ + + ++ G VHI+ GD+LR  +  G+  GK+AKE+ME+G+LVPD
Sbjct: 2   ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPD 61

Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFILLEVPEDTL 201
           ++++ +++E   +        + DG+PR++ QA AL    +K G + D  +L EVP++ +
Sbjct: 62  DLIIALIEEVFPKH----GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVV 117

Query: 202 VERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLS 261
           +ER+ GRR++P TG++YHVKY+PP       ++ +R DD  E +K RL+ +      ++ 
Sbjct: 118 IERLSGRRINPETGEVYHVKYNPPPPGV---KVIQREDDKPEVIKKRLEVYREQTAPLIE 174

Query: 262 LYED--VTVEVNGSVNKEDVFAQIDVALTN 289
            Y+   +   ++ S   E+V+ Q+   + +
Sbjct: 175 YYKKKGILRIIDASKPVEEVYRQVLEVIGD 204

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Length = 223

 Score =  236 bits (605), Expect = 3e-78
 Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 23/224 (10%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + I+I G   SGKGTQ  L+K+KY L HI +G + R  I  G+E GK+AKE +++G LVP
Sbjct: 1   MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVP 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFILLEVPEDT 200
           D+I + MV E L      ++GWLLDG+PR+  QA  L    ++ G + +  I + +P + 
Sbjct: 61  DDITIPMVLETLESKG--KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREV 118

Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET------DEIAARLTKRFDDTEEK-VKLRLKTHH 253
              R++GRR+        +  +                 L+ R DD +E  +  R   ++
Sbjct: 119 AKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYY 178

Query: 254 HNVEAVLSLYE----------DVTVEVNGSVNKEDVFAQIDVAL 287
           + V+  L+              V +E++G  + + +   +   L
Sbjct: 179 NTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Length = 199

 Score =  227 bits (582), Expect = 3e-75
 Identities = 67/207 (32%), Positives = 104/207 (50%), Gaps = 25/207 (12%)

Query: 87  IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
           I I G P SGKGTQCE + EKYG  H++ G+LLR E+A+ SE  K  ++ ME+G LVP  
Sbjct: 15  IFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSG 74

Query: 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV 206
           IV+ ++KE +        G+L+DGYPR + Q     +    P L I ++   DT+  R++
Sbjct: 75  IVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLL 134

Query: 207 GRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDV 266
                                    +R +   DDT + +  RL+ ++     V++ YE  
Sbjct: 135 QM-----------------------SRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETK 171

Query: 267 T--VEVNGSVNKEDVFAQIDVALTNLL 291
           T   ++N     EDVF Q+  A+ ++ 
Sbjct: 172 TQLHKINAEGTPEDVFLQLCTAIDSIF 198

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Length = 196

 Score =  225 bits (576), Expect = 3e-74
 Identities = 73/211 (34%), Positives = 114/211 (54%), Gaps = 25/211 (11%)

Query: 83  EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL 142
           +   I + G P SGKGTQCE I +KYG  H++ GDLLR+E+++GS  GK+  E MEKGQL
Sbjct: 8   KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQL 67

Query: 143 VPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLV 202
           VP E V+ M+++ +    +   G+L+DGYPR + Q    ++   QP L + ++   +T+ 
Sbjct: 68  VPLETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMT 127

Query: 203 ERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSL 262
           +R++ R                          + R DD EE +K RL+T++   E V++ 
Sbjct: 128 QRLLKR-----------------------GETSGRVDDNEETIKKRLETYYKATEPVIAF 164

Query: 263 YEDVT--VEVNGSVNKEDVFAQIDVALTNLL 291
           YE      +VN   + + VF+Q+   L  LL
Sbjct: 165 YEKRGIVRKVNAEGSVDSVFSQVCTHLDALL 195

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Length = 194

 Score =  212 bits (543), Expect = 3e-69
 Identities = 50/213 (23%), Positives = 95/213 (44%), Gaps = 30/213 (14%)

Query: 83  EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL 142
           +P  + + G P SGKGTQC  I   +G VH++AGDLLR E  +GS++G+     ++ G++
Sbjct: 5   KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEI 64

Query: 143 VPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALK---KYGFQPDLFILLEVPED 199
           VP  + V ++K  +         +L+DG+PR+     + +   K        +  + PE+
Sbjct: 65  VPSIVTVKLLKNAIDANQG--KNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEE 122

Query: 200 TLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAV 259
            + +R++ R                          + R DD  E +K R  T +   + V
Sbjct: 123 VMTQRLLKR-----------------------GESSGRSDDNIESIKKRFNTFNVQTKLV 159

Query: 260 LSLYE--DVTVEVNGSVNKEDVFAQIDVALTNL 290
           +  Y   D    +  + +  +V+  ++    ++
Sbjct: 160 IDHYNKFDKVKIIPANRDVNEVYNDVENLFKSM 192

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Length = 203

 Score =  210 bits (537), Expect = 3e-68
 Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 27/213 (12%)

Query: 83  EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA-AGSENGKRAKEHMEKGQ 141
           +   I + G P +GKGTQCE + + Y  VH++AGDLLRAE   AGS+ G+  K  +++GQ
Sbjct: 14  QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQ 73

Query: 142 LVPDEIVVTMVKERLSQP-DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDT 200
           +VP EI + +++  +S    + ++ +L+DG+PR + QA + ++   +    +  + PED 
Sbjct: 74  IVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDI 133

Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           ++ER++ R                        + + R DD  E +K R  T       V+
Sbjct: 134 MLERLLER-----------------------GKTSGRSDDNIESIKKRFNTFKETSMPVI 170

Query: 261 SLYED--VTVEVNGSVNKEDVFAQIDVALTNLL 291
             +E     V V    + EDV+  +  A+ + L
Sbjct: 171 EYFETKSKVVRVRCDRSVEDVYKDVQDAIRDSL 203

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Length = 201

 Score =  207 bits (530), Expect = 3e-67
 Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 32/209 (15%)

Query: 83  EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL 142
             +++++ G P +GKGTQ   + EK G+  I+ G+L R  I  G++ G  AK +++ G L
Sbjct: 19  SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDL 78

Query: 143 VPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFILLEVPE 198
           VP ++   +V +RL+ PD+  NG++LDGYPRS+ QA AL    ++ G   D  +   V E
Sbjct: 79  VPSDLTNELVDDRLNNPDAA-NGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSE 137

Query: 199 DTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEA 258
           + L+ER+ GR                            R DDT++ +  R+K +      
Sbjct: 138 EVLLERLKGRG---------------------------RADDTDDVILNRMKVYRDETAP 170

Query: 259 VLSLYEDVTVEVNGSVNKEDVFAQIDVAL 287
           +L  Y D    V+     ++VFA+   AL
Sbjct: 171 LLEYYRDQLKTVDAVGTMDEVFARALRAL 199

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Length = 196

 Score =  207 bits (528), Expect = 6e-67
 Identities = 54/213 (25%), Positives = 106/213 (49%), Gaps = 32/213 (15%)

Query: 84  PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA-AGSENGKRAKEHMEKGQL 142
           PL + + G P +GKGTQC  I EKYG  H++AG+LLR E     S+ G+  ++++++G++
Sbjct: 3   PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKI 62

Query: 143 VPDEIVVTMVKERLSQPD---SQENGWLLDGYPRSLSQATALKK---YGFQPDLFILLEV 196
           VP EI ++++K  + Q     +Q+N +L+DG+PR+        K           +  + 
Sbjct: 63  VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 122

Query: 197 PEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
             +  +ER + R                        + + R DD  E ++ R++T+  + 
Sbjct: 123 NNEICIERCLER-----------------------GKSSGRSDDNRESLEKRIQTYLQST 159

Query: 257 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 287
           + ++ LYE+     +++ S + ++VF ++    
Sbjct: 160 KPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIF 192

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Length = 186

 Score =  200 bits (510), Expect = 2e-64
 Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 35/210 (16%)

Query: 84  PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV 143
              ++  G P +GKGTQ   + ++ G   ++ GD+LR  +A G+  G+R +  ME+G LV
Sbjct: 4   GQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLV 63

Query: 144 PDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFILLEVPED 199
           PD++++ +++E L+         + DG+PR+L+QA AL     + G +    +L+EVPE+
Sbjct: 64  PDDLILELIREELA------ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEE 117

Query: 200 TLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAV 259
            LV R++ R                         L  R DD EE V+ RL+ +    E +
Sbjct: 118 ELVRRILRRA-----------------------ELEGRSDDNEETVRRRLEVYREKTEPL 154

Query: 260 LSLYED--VTVEVNGSVNKEDVFAQIDVAL 287
           +  YE   V   V+G    ++V+A+I  AL
Sbjct: 155 VGYYEARGVLKRVDGLGTPDEVYARIRAAL 184

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score =  106 bits (266), Expect = 3e-28
 Identities = 32/169 (18%), Positives = 53/169 (31%), Gaps = 17/169 (10%)

Query: 87  IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
            +I+G    GK T C+ +  +        GD++   +  G      + E +    L    
Sbjct: 5   YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLA---LTWKN 61

Query: 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA----LKKYGFQPDLFILLEVPEDTLV 202
           I    V   L+Q D      +LD                 K       FI+L    + L+
Sbjct: 62  ITDLTVNFLLAQND-----VVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELL 116

Query: 203 ERVVGRRLDPVTGKIYHVKYSPPETDEIAARL-----TKRFDDTEEKVK 246
            R   R+ D   G+         E+  I  R        +  +  + VK
Sbjct: 117 RRDALRKKDEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLNDIVK 165

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 93.0 bits (231), Expect = 3e-23
 Identities = 37/207 (17%), Positives = 75/207 (36%), Gaps = 32/207 (15%)

Query: 87  IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPD 145
           I+I+G P SGK    +L+KE  G   I   D++R   +  ++ G+R  +  ++  ++  D
Sbjct: 4   ILITGMPGSGKSEFAKLLKE-RGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGD 62

Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV 205
            +V  +  E L   +   +  + DG  RSL++    K+        + +  P     +R+
Sbjct: 63  GVVARLCVEELGTSN--HDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRM 119

Query: 206 VGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED 265
           + R                   D        R D  E K+ +                 D
Sbjct: 120 IERL---------------RSDDSKEISELIRRDREELKLGIGEVIA----------MAD 154

Query: 266 VTVEVNGSVNKEDVFAQIDVALTNLLE 292
             +  + +   E+   + +     +L+
Sbjct: 155 YIITNDSNY--EEFKRRCEEVTDRVLK 179

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Length = 184

 Score = 57.8 bits (139), Expect = 2e-10
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 15/124 (12%)

Query: 86  KIMISGAPASGKGTQCELIKEK-YGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
            I+I+G P +GK +  E+I  +  G  H+  G L++       EN    +   E    + 
Sbjct: 12  NILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVK-------ENHFYTEYDTELDTHII 64

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           +E     + + +          ++D +   L              + ++L    + L ER
Sbjct: 65  EEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPER-------WFHMVVVLHTSTEVLFER 117

Query: 205 VVGR 208
           +  R
Sbjct: 118 LTKR 121

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180

 Score = 53.9 bits (129), Expect = 5e-09
 Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 18/127 (14%)

Query: 86  KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD 145
            I+++G P  GK T  + +  K GL +I  GDL R E             +    +    
Sbjct: 13  NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQL-----------YDGYDEEYDC 61

Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV 205
            I+             +E G ++D +                  +  +L    + L ER+
Sbjct: 62  PILDEDRVVDELDNQMREGGVIVDYHGCDFFPER-------WFHIVFVLRTDTNVLYERL 114

Query: 206 VGRRLDP 212
             R  + 
Sbjct: 115 ETRGYNE 121

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 54.2 bits (130), Expect = 5e-09
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 12/166 (7%)

Query: 84  PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV 143
           P  I+++G PA+GK T  + +     L  + + D  +  +  G     R  E   +    
Sbjct: 5   PALIIVTGHPATGKTTLSQALATGLRLPLL-SKDAFKEVMFDGLGWSDR--EWSRRVGAT 61

Query: 144 PDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFILLEVPED 199
              ++       L    S     +++   R       +        F   + I      D
Sbjct: 62  AIMMLYHTAATILQSGQS----LIMESNFRVDLDTERMQNLHTIAPF-TPIQIRCVASGD 116

Query: 200 TLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKV 245
            LVER++ R         +    SP + + + +R           +
Sbjct: 117 VLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPL 162

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 53.2 bits (127), Expect = 1e-08
 Identities = 31/185 (16%), Positives = 57/185 (30%), Gaps = 33/185 (17%)

Query: 83  EPLKIMISGAPASGKGTQCELIKEKYGL--VHIAAGDLLRAEIAAGSENGKRAKEHMEKG 140
               +++SG P SGK T  E +    G+  VH    D L   I  G  +    + H ++ 
Sbjct: 8   GGNILLLSGHPGSGKSTIAEALANLPGVPKVHF-HSDDLWGYIKHGRIDPWLPQSH-QQN 65

Query: 141 QLVPDEIVVTMVKERLSQP-----DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLE 195
           +++       +      +      D       L  +               +P  +I+L 
Sbjct: 66  RMIMQIA-ADVAGRYAKEGYFVILDGVVRPDWLPAFTALA-----------RPLHYIVLR 113

Query: 196 VPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHN 255
                 +ER + R  D ++               + A L  +F D        L     +
Sbjct: 114 TTAAEAIERCLDRGGDSLSD------------PLVVADLHSQFADLGAFEHHVLPVSGKD 161

Query: 256 VEAVL 260
            +  L
Sbjct: 162 TDQAL 166

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 10/132 (7%)

Query: 87  IMISGAPASGKGTQC-ELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD 145
           I+  G P SGK T   E I +  G  +I   D  R  I A  E  +   ++ +K + +  
Sbjct: 5   ILTIGCPGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEERDEY--KYTKKKEGIVT 61

Query: 146 EIVVTMVKERLSQPDSQENGWLLDG---YPRSLSQATAL-KKYGFQPDLFILLEVPEDTL 201
            +     K  L   DS +   ++      P          K+YG++     + +VP   L
Sbjct: 62  GMQFDTAKSILYGGDSVKG-VIISDTNLNPERRLAWETFAKEYGWKV-EHKVFDVPWTEL 119

Query: 202 VERVVGRRLDPV 213
           V+R   R    V
Sbjct: 120 VKRNSKRGTKAV 131

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 20/186 (10%)

Query: 87  IMISGAPASGKGTQC-ELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD 145
           I+  G P SGK T   E I +  G  +I   D  R  I A  E  +      ++G +   
Sbjct: 5   ILTIGCPGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEERDEYKYTKKKEGIV--T 61

Query: 146 EIVVTMVKERLSQPDSQENGWLLDG---YPRSLSQATAL-KKYGFQPDLFILLEVPEDTL 201
            +     K  L   DS +   ++      P          K+YG++ +   + +VP   L
Sbjct: 62  GMQFDTAKSILYGGDSVKGV-IISDTNLNPERRLAWETFAKEYGWKVE-HKVFDVPWTEL 119

Query: 202 VERVVGRRLDPVTGKIYHVKYS----------PPETDEIAARLTKRFDDTEEKVKLRLKT 251
           V+R   R    V   +    Y              T      +    D T  K+  R   
Sbjct: 120 VKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNGRGPY 179

Query: 252 HHHNVE 257
                +
Sbjct: 180 DLEKCD 185

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Length = 192

 Score = 42.4 bits (99), Expect = 5e-05
 Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 14/130 (10%)

Query: 86  KIMISGAPASGKGTQC-----ELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKG 140
            ++++G P  G  T        L KE      ++ G ++     A  EN    ++ M K 
Sbjct: 5   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEV--AKEENLVSDRDQMRKM 62

Query: 141 QLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKY------GFQPDLFILL 194
                + +  M   ++++   +     +D +    +    L            PDL I++
Sbjct: 63  DPETQKRIQKMAGRKIAEMAKESPV-AVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVV 121

Query: 195 EVPEDTLVER 204
           E   D ++ R
Sbjct: 122 ETTGDEILMR 131

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 29/187 (15%), Positives = 59/187 (31%), Gaps = 43/187 (22%)

Query: 136 HM--EKG--QLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPD-- 189
           HM  E G  Q    +I+       +   D ++   + D  P+S+     +       D  
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKD---VQD-MPKSILSKEEIDHIIMSKDAV 61

Query: 190 -----LFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEK 244
                LF  L   ++ +V++ V   L           Y       + + +          
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRI--------NY-----KFLMSPIKTEQRQPSMM 108

Query: 245 VKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSAL----GS 300
            ++ ++           LY D  V    +V++   + ++  AL  L   +   +    GS
Sbjct: 109 TRMYIEQRD-------RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 301 ----LAA 303
               +A 
Sbjct: 162 GKTWVAL 168

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202

 Score = 38.9 bits (90), Expect = 8e-04
 Identities = 26/132 (19%), Positives = 43/132 (32%), Gaps = 11/132 (8%)

Query: 78  ASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHM 137
           A+    P  I++ G   SGK +  E I E  G   I    L   E              M
Sbjct: 12  AAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPE----------NIRKM 61

Query: 138 EKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVP 197
            +G  + D+     +   + +  +     ++       S    L++       F+ L   
Sbjct: 62  SEGIPLTDDDRWPWL-AAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGS 120

Query: 198 EDTLVERVVGRR 209
           E  L ER+  R 
Sbjct: 121 ESVLAERMHHRT 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	303
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	100.0
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	100.0
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	100.0
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	100.0
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	100.0
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	100.0
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	100.0
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	100.0
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	100.0
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	100.0
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	100.0
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.97
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.97
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.95
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.94
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.94
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.94
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.94
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.93
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.93
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.9
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.85
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.79
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.78
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.78
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.77
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.76
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.76
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.75
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.74
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.73
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.73
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.73
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.71
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.71
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.71
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.7
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.7
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.69
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.69
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.69
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.69
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.68
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.68
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.68
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.67
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.66
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.66
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.66
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.66
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.65
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	99.64
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.64
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.64
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.63
1via_A	175	Shikimate kinase; structural genomics, transferase	99.61
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.61
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.6
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.6
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.6
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.59
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.59
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.57
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.55
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.54
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.54
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.53
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.53
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.52
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.52
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.52
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.51
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.5
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.49
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.47
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.47
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.46
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.44
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.4
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.39
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.37
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.34
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	99.31
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.26
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.25
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.25
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	99.22
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	99.18
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.17
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.16
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.16
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.15
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.14
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.14
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.06
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	99.06
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.04
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.02
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	99.0
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.94
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.93
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.9
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	98.89
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	98.86
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.85
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.81
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.8
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.77
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.77
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	98.69
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	98.62
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.6
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	98.59
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	98.57
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.54
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.54
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.53
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	98.53
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.5
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.47
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.44
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.42
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.41
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.38
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.36
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.22
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.07
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.02
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	98.0
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.98
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.94
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.94
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.87
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	97.77
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.62
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.61
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.55
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.46
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.41
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.4
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.4
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.4
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.39
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.38
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.36
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.34
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.33
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.33
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.33
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.3
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.29
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.29
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.28
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.28
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.27
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.23
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.22
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.21
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.2
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.19
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.17
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.17
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.15
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.14
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.11
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.11
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.11
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.09
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.06
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.05
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.04
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.03
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.03
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.01
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.01
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.0
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.98
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.96
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.95
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.95
3bos_A	242	Putative DNA replication factor; P-loop containing	96.92
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.91
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.9
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.88
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	96.88
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.87
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.87
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.86
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.85
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.85
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.81
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	96.78
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.77
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.75
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.75
3pvs_A	447	Replication-associated recombination protein A; ma	96.69
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.69
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	96.69
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.68
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.67
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.67
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.65
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.64
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.64
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.63
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.63
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.62
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.61
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.6
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.6
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.6
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.58
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.57
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.55
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.55
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.55
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.54
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.54
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.53
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.52
3co5_A	143	Putative two-component system transcriptional RES	96.51
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.5
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.5
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.48
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.47
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.45
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.43
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.42
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.4
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.4
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	96.37
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.37
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.37
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.36
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.36
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.34
2og2_A	359	Putative signal recognition particle receptor; nuc	96.34
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.34
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.33
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.33
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.32
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.32
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.32
2qgz_A	308	Helicase loader, putative primosome component; str	96.31
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.31
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.31
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.31
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.31
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.3
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.29
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.29
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.29
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.29
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.28
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.27
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.27
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.25
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.25
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.25
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.25
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.24
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.24
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.24
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.24
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.24
1g6h_A	257	High-affinity branched-chain amino acid transport	96.24
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.23
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.23
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.22
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.22
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.22
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.21
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.21
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.21
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.2
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.19
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.19
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.18
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.18
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.17
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.17
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.16
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.16
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.15
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.14
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.13
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.12
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.12
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.12
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.12
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.12
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.12
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.12
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.11
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.1
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.1
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.09
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.09
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.09
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.08
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.08
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.07
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.07
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.06
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.06
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.05
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.05
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.05
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.04
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.03
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.03
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.02
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.01
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.01
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.0
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.0
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.99
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.98
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.97
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.97
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.97
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	95.96
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.96
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.96
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.94
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	95.94
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.93
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	95.93
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.91
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.89
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.89
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.89
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.89
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.89
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.88
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.88
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.88
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.86
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	95.86
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.86
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.85
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.85
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.85
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.83
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.83
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.83
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.82
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.81
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.8
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.8
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.8
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.8
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	95.79
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.78
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.78
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.78
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.78
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.78
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.77
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.77
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.76
2chq_A	319	Replication factor C small subunit; DNA-binding pr	95.75
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.74
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.74
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.73
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.73
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.72
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.72
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.72
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.72
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.71
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	95.71
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.71
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.71
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.7
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.7
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.7
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.69
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.68
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.67
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.67
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.64
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.63
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.63
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.63
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.62
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.62
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.61
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.6
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.59
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.57
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.56
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.56
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.54
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.54
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	95.54
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.52
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.52
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.51
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.51
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.49
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.49
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.48
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.47
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.47
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	95.46
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.44
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.43
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.41
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.4
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.39
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.34
2fna_A	357	Conserved hypothetical protein; structural genomic	95.33
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.33
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.33
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.31
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.31
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.29
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.28
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.27
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.27
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	95.26
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.25
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	95.25
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.25
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.24
2xxa_A	433	Signal recognition particle protein; protein trans	95.21
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.18
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	95.16
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	95.16
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.16
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.15
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.15
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.14
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	95.14
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	95.12
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.11
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	95.08
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.08
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	95.07
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.07
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.07
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.06
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.03
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.03
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.02
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	95.01
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.01
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.99
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	94.96
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	94.94
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	94.93
2z43_A	324	DNA repair and recombination protein RADA; archaea	94.91
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	94.87
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	94.86
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	94.85
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	94.84
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.84
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	94.84
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	94.84
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	94.84
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	94.78
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	94.76
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	94.76
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	94.75
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.75
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	94.73
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	94.73
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	94.73
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.73
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	94.72
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.72
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	94.7
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.66
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	94.6
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	94.56
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	94.53
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.47
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.44
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.42
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	94.42
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	94.41
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.4
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.36
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	94.35
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.35
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.34
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	94.31
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	94.29
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	94.29
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	94.23
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	94.21
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	94.19
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	94.12
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.09
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.09
1xp8_A	366	RECA protein, recombinase A; recombination, radior	94.08
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.13
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.06

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=100.00  E-value=6.5e-40  Score=281.94  Aligned_cols=206  Identities=39%  Similarity=0.721  Sum_probs=176.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS  161 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~  161 (303)
                      ...|.++|+|+|||||||+|+.|+++||+.+|++++++++.+..+++.|..+++++..|..+|++.+..++.+++.+..+
T Consensus         6 ~~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~   85 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADC   85 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGG
T ss_pred             ccccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCccc
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             CCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----hhhccC
Q 022042          162 QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTKR  237 (303)
Q Consensus       162 ~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~rL~~r  237 (303)
                       .++||+||||++..|++.|.+.+..+|.||+|++|++++++|+.+|+.|+.+|+.||..|+||..++++    ++|.+|
T Consensus        86 -~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R  164 (230)
T 3gmt_A           86 -ANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQR  164 (230)
T ss_dssp             -TTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred             -CCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccC
Confidence             468999999999999999998888899999999999999999999999999999999999999988754    578899


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHhhc-------------ceEEEcCCCCHHHHHHHHHHHHH
Q 022042          238 FDDTEEKVKLRLKTHHHNVEAVLSLYED-------------VTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       238 ~~d~~e~~~~r~~~~~~~~~~~~~~~~~-------------~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                      .||.+|.+++|++.|+++..++.++|..             .++.||+++++++|+++|.+++.
T Consensus       165 ~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~  228 (230)
T 3gmt_A          165 DDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQV  228 (230)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC----------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999984             68899999999999999998774

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=100.00  E-value=2.1e-39  Score=276.28  Aligned_cols=198  Identities=35%  Similarity=0.724  Sum_probs=184.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |+|+|.|||||||+|+|+.|+++||++||++++++|+.+..+++.|..++.++..|..+|++++..++.+++.+    .+
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~----~~   76 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK----HG   76 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS----SS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc----CC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999998865    46


Q ss_pred             cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042          165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD  240 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d  240 (303)
                      +||+||||++..|++.|..    .+..++.||+|++|++++++|+..|+.++.+|+.||..++||..   ..++.+|.||
T Consensus        77 ~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~---g~~l~~r~DD  153 (206)
T 3sr0_A           77 NVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPP---GVKVIQREDD  153 (206)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCT---TCCCBCCGGG
T ss_pred             ceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCC---CceecccCCC
Confidence            7999999999999988754    56789999999999999999999999999999999999999863   4678899999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          241 TEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       241 ~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                      .+|.+++|++.|+++..++.++|..  .++.||+++++++|+++|.++|.+
T Consensus       154 ~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e  204 (206)
T 3sr0_A          154 KPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD  204 (206)
T ss_dssp             SHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence            9999999999999999999999976  688999999999999999998854

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=100.00  E-value=4.9e-37  Score=263.07  Aligned_cols=191  Identities=32%  Similarity=0.560  Sum_probs=171.0

Q ss_pred             hhhcccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHH
Q 022042           76 VLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKER  155 (303)
Q Consensus        76 ~~~~~~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~  155 (303)
                      ......+++++|+|.|||||||+|+|+.|+++||+.+|++++++|..+..+++.|..+.+++..|..+|++.+..++.++
T Consensus        21 ~~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~  100 (217)
T 3umf_A           21 MTDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEA  100 (217)
T ss_dssp             ---CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             ccchhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            33444567889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhc
Q 022042          156 LSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLT  235 (303)
Q Consensus       156 l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~  235 (303)
                      +.+..+..++||+||||++..|++.|.+....++++|+|++|++++.+|+..|..                       +.
T Consensus       101 l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~-----------------------~~  157 (217)
T 3umf_A          101 MIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAE-----------------------TS  157 (217)
T ss_dssp             HHHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC---------------------------
T ss_pred             HhhccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccc-----------------------cC
Confidence            9776666789999999999999999999888999999999999999999999852                       34


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          236 KRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       236 ~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                      +|.||.+|.+++|++.|+++..++.++|..  .++.||+++++++|+++|.+.|++
T Consensus       158 ~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k  213 (217)
T 3umf_A          158 NRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK  213 (217)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            677888999999999999999999999975  688999999999999999998865

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=100.00  E-value=2.1e-34  Score=251.86  Aligned_cols=207  Identities=31%  Similarity=0.570  Sum_probs=188.9

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      ..+|++|+|+|+|||||||+|+.|+++||+.++++++++++....+++.+..+.+++..|..++++.+..++...+....
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~  105 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ  105 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc
Confidence            45788999999999999999999999999999999999999988899999999999999999999999999999887765


Q ss_pred             CCCCcEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----h
Q 022042          161 SQENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----A  232 (303)
Q Consensus       161 ~~~~~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~  232 (303)
                      + +.+||+||||++..++..|.+    .+..||.+|+|++|++++++|+.+|+.++.+|+.||..|+||..++.+    +
T Consensus       106 ~-~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~  184 (243)
T 3tlx_A          106 C-KKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNE  184 (243)
T ss_dssp             G-SSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCC
T ss_pred             c-cCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccc
Confidence            4 678999999999999887654    456799999999999999999999999999999999999999887654    4


Q ss_pred             hhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHH
Q 022042          233 RLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       233 rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                      +|.+|.+|.++.+++|+..|+++..++.++|..  .++.||++.++++|+++|.++|.
T Consensus       185 ~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  242 (243)
T 3tlx_A          185 PLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID  242 (243)
T ss_dssp             BCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence            577888999999999999999999999999875  68899999999999999998874

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=100.00  E-value=3.5e-34  Score=246.81  Aligned_cols=219  Identities=72%  Similarity=1.116  Sum_probs=195.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS  161 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~  161 (303)
                      .+|++|+|+|+|||||||+++.|+++||+.++++|++++.....++..|..+.+++..|..++++.+..++.+.+.....
T Consensus         3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~   82 (222)
T 1zak_A            3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA   82 (222)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence            35678999999999999999999999999999999999998888889999999999999999998888777777654333


Q ss_pred             CCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCc
Q 022042          162 QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDT  241 (303)
Q Consensus       162 ~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~  241 (303)
                      .+++||+||||++..++..+...+..||++|||+++++++.+|+..|..++.+|+.|+..++||..+++++++..+.++.
T Consensus        83 ~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~  162 (222)
T 1zak_A           83 QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDT  162 (222)
T ss_dssp             HHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCC
T ss_pred             cCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCC
Confidence            34689999999999888888877778999999999999999999999889999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHhhhhcccc
Q 022042          242 EEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSALGS  300 (303)
Q Consensus       242 ~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~~~~~~~~  300 (303)
                      .+.+++|+..|+.+..++.+.|...++.||++.++++++++|.+.|...+.++.....+
T Consensus       163 ~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~~~~~~ev~~~I~~~l~~~l~~~~~~~~~  221 (222)
T 1zak_A          163 EEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMVSS  221 (222)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcEEEEECCCCHHHHHHHHHHHHHhhcccccccCCC
Confidence            89999999999999999988898788899999999999999999999988877665543

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.1e-33  Score=241.27  Aligned_cols=206  Identities=40%  Similarity=0.704  Sum_probs=181.3

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      +.++++|+|+|+|||||||+|+.|+++||+.++++|+++++....+++.+..+++++..|..++++....++...+....
T Consensus         2 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~   81 (217)
T 3be4_A            2 NSKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGV   81 (217)
T ss_dssp             GGGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence            34568999999999999999999999999999999999999888899999999999999999999988888888877644


Q ss_pred             CCCCcEEEcCCCCCHHHHHHHH----HhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----h
Q 022042          161 SQENGWLLDGYPRSLSQATALK----KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----A  232 (303)
Q Consensus       161 ~~~~~~Vldg~p~~~~~~~~l~----~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~  232 (303)
                      + +.+||+||||++..++..+.    ..+..||++|||++|++++.+|+..|..++.+|+.||..|+||..++.+    +
T Consensus        82 ~-~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~  160 (217)
T 3be4_A           82 C-VNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGE  160 (217)
T ss_dssp             T-TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred             c-CCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCcccccccccc
Confidence            4 67899999999988777665    3567899999999999999999999999999999999999999987765    3


Q ss_pred             hhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh--cceEEEcCCCCHHHHHHHHHHHH
Q 022042          233 RLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       233 rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~s~eev~~~I~~~l  287 (303)
                      +|..+.++..+.+++|+..|++...++.++|.  ..++.||++.++++|+++|.+.|
T Consensus       161 ~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  217 (217)
T 3be4_A          161 PLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL  217 (217)
T ss_dssp             BCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence            77788888899999999999999999988886  36889999999999999998753

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=100.00  E-value=2.2e-33  Score=240.65  Aligned_cols=204  Identities=42%  Similarity=0.744  Sum_probs=186.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |+|+|+|+|||||||+|+.|+++||+.++++|+++++....+++.+..+.+++..+..++++.+..++...+....+ +.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~-~~   79 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDC-ER   79 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGG-TT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccc-cC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999888877654 67


Q ss_pred             cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----hhhcc
Q 022042          165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTK  236 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~rL~~  236 (303)
                      ++|+||||++..++..+.+    .+..+|.+|||++|++++.+|+.+|+.|+.+|+.||..++||..++++    +++..
T Consensus        80 ~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~  159 (216)
T 3dl0_A           80 GFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQ  159 (216)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEEC
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccC
Confidence            8999999999988877665    456799999999999999999999999999999999999999987764    46778


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          237 RFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       237 r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                      |.++.++.+++|+..|.+...++.++|..  .+++||+++++++++++|.+.|.+
T Consensus       160 r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3dl0_A          160 RADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG  214 (216)
T ss_dssp             CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            88999999999999999999999999875  688999999999999999998864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=100.00  E-value=5.5e-33  Score=238.01  Aligned_cols=204  Identities=39%  Similarity=0.712  Sum_probs=185.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |+|+|+|+|||||||+|+.|++++|+.++++|+++++....+++.+..+.+++..+..++++.+..++...+....+ +.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~-~~   79 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDC-QK   79 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGG-TT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccC-CC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999888877554 67


Q ss_pred             cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----hhhcc
Q 022042          165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTK  236 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~rL~~  236 (303)
                      +||+||||+...++..+..    .+..+|.+|||++|++++.+|+.+|+.|+.+|+.||..++||..++.+    .++..
T Consensus        80 ~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~  159 (216)
T 3fb4_A           80 GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQ  159 (216)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEEC
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCcccc
Confidence            8999999999988877765    456789999999999999999999999999999999999999887764    45677


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          237 RFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       237 r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                      |.++.++.+++|++.|.+...++.++|..  .+++||+++++++++++|.+.|.+
T Consensus       160 r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3fb4_A          160 RIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG  214 (216)
T ss_dssp             CGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence            88889999999999999999999998875  688999999999999999998864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=100.00  E-value=1.2e-32  Score=235.95  Aligned_cols=202  Identities=43%  Similarity=0.788  Sum_probs=182.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |+|+|+|+|||||||+|+.|++++|+.++++|+++++.+..+++.+..+++++..+..++++.+..++...+....+ +.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~-~~   79 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDC-RN   79 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGG-GG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc-CC
Confidence            47899999999999999999999999999999999998888999999999999999999999998998888876433 46


Q ss_pred             cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----hhhccCCCC
Q 022042          165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTKRFDD  240 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~rL~~r~~d  240 (303)
                      +||+||||+...++..|...+..||++|||+++++++++|+.+|..++.+|+.||+.++||..++.+    ++|..|.++
T Consensus        80 ~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd  159 (214)
T 1e4v_A           80 GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDD  159 (214)
T ss_dssp             CEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTC
T ss_pred             CEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCCC
Confidence            7999999999999888888777899999999999999999999988899999999999999987743    567888899


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhh-------cceEEEcCCCCHHHHHHHHHHHH
Q 022042          241 TEEKVKLRLKTHHHNVEAVLSLYE-------DVTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       241 ~~e~~~~r~~~~~~~~~~~~~~~~-------~~~~~Id~~~s~eev~~~I~~~l  287 (303)
                      ..+.+.+|++.|.....++.++|.       ..++.||+++++++|+++|.+.|
T Consensus       160 ~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l  213 (214)
T 1e4v_A          160 QEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  213 (214)
T ss_dssp             SHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence            899999999999999999988887       46889999999999999998876

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=100.00  E-value=2.5e-31  Score=230.79  Aligned_cols=207  Identities=33%  Similarity=0.648  Sum_probs=183.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      .+++|+|+|+|||||||+|+.|+++||+.++++|+++++....+++.+..+++++..|..++++....++...+....+ 
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~-   93 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC-   93 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc-
Confidence            4578999999999999999999999999999999999998888889999999999999999999988888888876543 


Q ss_pred             CCcEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHh----hh
Q 022042          163 ENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAA----RL  234 (303)
Q Consensus       163 ~~~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~----rL  234 (303)
                      +++||+||||++..++..+.+    .+..+|++|||+++++++.+|+..|..++.+|+.||..|+||..+++++    +|
T Consensus        94 ~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l  173 (233)
T 1ak2_A           94 KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPL  173 (233)
T ss_dssp             TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBC
T ss_pred             cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCccccccccccccc
Confidence            578999999999888775543    3557999999999999999999999999999999999999999877643    45


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHHHHHHHhh--cceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          235 TKRFDDTEEKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       235 ~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                      ..|.++..+.+.+|+..|+....++.++|.  ..++.||+++++++|+++|.+.|.++
T Consensus       174 ~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~  231 (233)
T 1ak2_A          174 IRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA  231 (233)
T ss_dssp             EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence            677888889999999999999889888886  36889999999999999999998765

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=100.00  E-value=1.8e-31  Score=229.57  Aligned_cols=206  Identities=36%  Similarity=0.662  Sum_probs=179.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHc-CCC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS-QPD  160 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~-~~~  160 (303)
                      +++++|+|+|+|||||||+|+.|+++||+.++++|+++++....+++.+..+++++..|..++++.+..++.+.+. ...
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~   81 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA   81 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccc
Confidence            3568999999999999999999999999999999999999888889999999999999999999988888888776 332


Q ss_pred             CCCCcEEEcCCCCCHHHHHHHH----HhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----h
Q 022042          161 SQENGWLLDGYPRSLSQATALK----KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----A  232 (303)
Q Consensus       161 ~~~~~~Vldg~p~~~~~~~~l~----~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~  232 (303)
                       .+++||+||||++..++..+.    ..+..||++|||+++++++++|+.+|..++.+|+.||..|+||..++++    +
T Consensus        82 -~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~  160 (220)
T 1aky_A           82 -CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGE  160 (220)
T ss_dssp             -GGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred             -cCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccccc
Confidence             257899999999988776553    3467899999999999999999999998999999999999999876432    3


Q ss_pred             hhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh--cceEEEcCCCCHHHHHHHHHHHHH
Q 022042          233 RLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       233 rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                      +|..|.++..+.+.+|++.|.+...++.++|.  +.++.||++.++++|+++|.+.|.
T Consensus       161 ~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  218 (220)
T 1aky_A          161 ALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG  218 (220)
T ss_dssp             BCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence            56778888889999999999999888888885  368899999999999999998774

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.97  E-value=1.1e-30  Score=225.75  Aligned_cols=208  Identities=34%  Similarity=0.627  Sum_probs=178.9

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      ..+|++|+|+|+|||||||+++.|++++|+.++++|++++.....+++.|..+.+++..|..++++....++.+++.+. 
T Consensus         4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-   82 (227)
T 1zd8_A            4 SARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL-   82 (227)
T ss_dssp             ---CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC-
T ss_pred             cccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc-
Confidence            4567899999999999999999999999999999999999988888889999999999898889888777777777653 


Q ss_pred             CCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----hhhcc
Q 022042          161 SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTK  236 (303)
Q Consensus       161 ~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~rL~~  236 (303)
                       .+.+||+|+||.+..+...+... ..+|++|||+++++++.+|+.+|..++.+|+.|+..++||..++++    ++|.+
T Consensus        83 -~~~~~vid~~~~~~~~~~~l~~~-~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~  160 (227)
T 1zd8_A           83 -TQYSWLLDGFPRTLPQAEALDRA-YQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQ  160 (227)
T ss_dssp             -TTSCEEEESCCCSHHHHHHHHTT-SCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBC
T ss_pred             -cCCCEEEeCCCCCHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccC
Confidence             35789999999998887766654 4689999999999999999999988888899999999999987764    46777


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhh--cceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042          237 RFDDTEEKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       237 r~~d~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~s~eev~~~I~~~l~~~l~  292 (303)
                      |.++..+.+++|+..|.....++.++|.  +.++.||++ ++++|+++|.+.|.+.+.
T Consensus       161 r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~~~  217 (227)
T 1zd8_A          161 REDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTKVP  217 (227)
T ss_dssp             CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhhcC
Confidence            7777889999999999999999888886  468899999 999999999999876543

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.97  E-value=4.3e-31  Score=227.92  Aligned_cols=201  Identities=33%  Similarity=0.612  Sum_probs=173.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |+|+|+|+|||||||+++.|+++||+.++++|+++++.+..+++.+..+++++..|..++++.+..++...+....  +.
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~--g~   78 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG--KD   78 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHC--TT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhccc--CC
Confidence            4799999999999999999999999999999999999877788899999999999988899888888877776533  57


Q ss_pred             cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCC-CCceecccCCCCCchH-H----Hhhh
Q 022042          165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPV-TGKIYHVKYSPPETDE-I----AARL  234 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~-~g~~~~~~~~~p~~~~-i----~~rL  234 (303)
                      +||+||||++..++..+..    .+..||++|||++|++++.+|+.+|..++. +|+.||..|+||..++ +    .++|
T Consensus        79 ~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l  158 (223)
T 2xb4_A           79 GWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGAL  158 (223)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBE
T ss_pred             eEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCcccccccccccccc
Confidence            8999999999888877754    366899999999999999999999987777 9999999999998766 2    2477


Q ss_pred             ccCCCCcHH-HHHHHHHHHHHHHHHHHH---Hhhc-------ceEEEcCCCCHHHHHHHHHHHH
Q 022042          235 TKRFDDTEE-KVKLRLKTHHHNVEAVLS---LYED-------VTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       235 ~~r~~d~~e-~~~~r~~~~~~~~~~~~~---~~~~-------~~~~Id~~~s~eev~~~I~~~l  287 (303)
                      .+|.+|..+ .+++|+..|++...++.+   +|..       .++.||+++++++|+++|.+.|
T Consensus       159 ~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l  222 (223)
T 2xb4_A          159 SARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL  222 (223)
T ss_dssp             ECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence            788777778 999999999888766666   6643       5789999999999999998876

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.95  E-value=1.7e-26  Score=194.17  Aligned_cols=187  Identities=39%  Similarity=0.668  Sum_probs=155.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS  161 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~  161 (303)
                      .++++|+|+|+|||||||+|+.|++++|+.+++.|++++.....++..+..+.+++..|..++++.....+...+.....
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~   86 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVN   86 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccc
Confidence            46789999999999999999999999999999999999998888888999999999888888888777777666655444


Q ss_pred             CCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCc
Q 022042          162 QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDT  241 (303)
Q Consensus       162 ~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~  241 (303)
                      .+.++|+||||+...+...|......++++|||++|++++.+|+.+|...                       ..+.++.
T Consensus        87 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~-----------------------~~~~~~~  143 (196)
T 2c95_A           87 TSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGET-----------------------SGRVDDN  143 (196)
T ss_dssp             TCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTS-----------------------SSCGGGS
T ss_pred             cCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCc-----------------------CCCCCCC
Confidence            57889999999999888777765567999999999999999999887421                       0122345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042          242 EEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLL  291 (303)
Q Consensus       242 ~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~~l  291 (303)
                      .+.+.+|+..++....++.+.|..  .++.||++.++++++++|.+.+.+.+
T Consensus       144 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~~  195 (196)
T 2c95_A          144 EETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDALL  195 (196)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHhc
Confidence            677888999988888887777753  56789999999999999999987653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.94  E-value=1.1e-25  Score=190.71  Aligned_cols=186  Identities=33%  Similarity=0.604  Sum_probs=150.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHH-cCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA-AGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~-~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      .+|++|+|+|++||||||+|+.|++++|+.++++|++++.... .++..+..+++++..|...+++....++.+.+....
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~l   92 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNV   92 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhh
Confidence            3567999999999999999999999999999999999988654 577888899988888888887776666655554322


Q ss_pred             CCC-CcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042          161 SQE-NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD  239 (303)
Q Consensus       161 ~~~-~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~  239 (303)
                      ..+ .+||+||+|++..+...+......+|++|||++|++++.+|+.+|..                       ...+.+
T Consensus        93 ~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~-----------------------~~~~~~  149 (203)
T 1ukz_A           93 KANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGK-----------------------TSGRSD  149 (203)
T ss_dssp             HTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHH-----------------------HHCCTT
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccc-----------------------cCCCCC
Confidence            223 57999999999988887777666689999999999999999988731                       112335


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhh--cceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          240 DTEEKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       240 d~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                      +..+.+.+|+..|.+...++.++|.  +.++.||++.++++++++|.+.+.+.
T Consensus       150 ~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~~  202 (203)
T 1ukz_A          150 DNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDS  202 (203)
T ss_dssp             CSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence            5678888999998888778777664  46677999999999999999988753

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.94  E-value=9.6e-26  Score=190.91  Aligned_cols=179  Identities=36%  Similarity=0.634  Sum_probs=150.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS  161 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~  161 (303)
                      .++++|+|+|+|||||||+|+.|++++|+.++++|+++++....++..+..+.+++..|..++++.....+.+.+.... 
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~-   96 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPD-   96 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGG-
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhccc-
Confidence            4567999999999999999999999999999999999999888888899999999999988888888888877776543 


Q ss_pred             CCCcEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccC
Q 022042          162 QENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKR  237 (303)
Q Consensus       162 ~~~~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r  237 (303)
                      .+++||+||+|.+..+...+..    .+..|+++|||++|++++.+|+.+|.                           +
T Consensus        97 ~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~---------------------------r  149 (201)
T 2cdn_A           97 AANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG---------------------------R  149 (201)
T ss_dssp             GTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC---------------------------C
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC---------------------------C
Confidence            3578999999999877765443    45568999999999999999998873                           1


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHH
Q 022042          238 FDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       238 ~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                      .++..+.+.+|+..|.....++.++|...+++||++.++++++++|.+.+.
T Consensus       150 ~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~~~eev~~~I~~~l~  200 (201)
T 2cdn_A          150 ADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFARALRALG  200 (201)
T ss_dssp             TTCSHHHHHHHHHHHHHHTTTHHHHTTTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHhhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHc
Confidence            234577888899988888777788887788899999999999999987763

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.94  E-value=4.6e-25  Score=184.62  Aligned_cols=182  Identities=27%  Similarity=0.558  Sum_probs=151.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      .+++|+|+|+|||||||+|+.|++++|+.+++.|+++++....+++.+..+.+++..+...+++.....+...+...  .
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~--~   82 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN--Q   82 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS--T
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc--C
Confidence            45799999999999999999999999999999999999887788899999999999998888887777777777654  3


Q ss_pred             CCcEEEcCCCCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042          163 ENGWLLDGYPRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD  239 (303)
Q Consensus       163 ~~~~Vldg~p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~  239 (303)
                      +.++|+||+|....+...|...   +..+|++|||++|++++.+|+.+|..                       ...+.+
T Consensus        83 ~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~-----------------------~~~r~~  139 (194)
T 1qf9_A           83 GKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE-----------------------SSGRSD  139 (194)
T ss_dssp             TCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT-----------------------TSCCTT
T ss_pred             CCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc-----------------------cCCCCC
Confidence            6789999999998877766542   23689999999999999999988741                       012345


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhh--cceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          240 DTEEKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       240 d~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                      +..+.+.+|+..|.+...++.+.|.  +.+++||++.++++++++|.+.+.+
T Consensus       140 ~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~  191 (194)
T 1qf9_A          140 DNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             CSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            6678889999999888888777764  3567899999999999999988864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.94  E-value=8.8e-26  Score=190.22  Aligned_cols=185  Identities=35%  Similarity=0.588  Sum_probs=151.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      .+++|+|+|+|||||||+|+.|++++|+.+++.|++++.....+++.+..+.+++..|..++++.....+.+.+......
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~   90 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD   90 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence            45799999999999999999999999999999999999887778888999999998888888887777776666554334


Q ss_pred             CCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcH
Q 022042          163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE  242 (303)
Q Consensus       163 ~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~  242 (303)
                      +.++|+||+|....+...|......||++|||++|++++.+|+.+|....                       .+.++..
T Consensus        91 ~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~-----------------------~~~~~~~  147 (199)
T 2bwj_A           91 TRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSS-----------------------LPVDDTT  147 (199)
T ss_dssp             CSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCC-----------------------SCHHHHH
T ss_pred             CccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCC-----------------------CCCCCCH
Confidence            67899999999988877776644468999999999999999999885210                       1112345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          243 EKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       243 e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                      +.+.+|+..|+....++.+.|..  .+++||++.++++++++|.+.+.++
T Consensus       148 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~  197 (199)
T 2bwj_A          148 KTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSI  197 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence            77888888888888877776643  4578999999999999999988764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.93  E-value=2e-24  Score=180.21  Aligned_cols=176  Identities=36%  Similarity=0.653  Sum_probs=144.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      ++++|+|+|+|||||||+++.|++++|+.+++.|++++..+..+++.+..+.+++..+...+++.....+...+.     
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~-----   77 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA-----   77 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC-----
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc-----
Confidence            467999999999999999999999999999999999998877888889999999999988888887777766653     


Q ss_pred             CCcEEEcCCCCCHHHHHHHH----HhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCC
Q 022042          163 ENGWLLDGYPRSLSQATALK----KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF  238 (303)
Q Consensus       163 ~~~~Vldg~p~~~~~~~~l~----~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~  238 (303)
                       .++|+||+++...+...+.    ..+..||.+|||++|++++.+|+.+|..                       ...|.
T Consensus        78 -~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~-----------------------~~~r~  133 (186)
T 3cm0_A           78 -ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAE-----------------------LEGRS  133 (186)
T ss_dssp             -SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHH-----------------------HHTCS
T ss_pred             -CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccc-----------------------cCCCC
Confidence             2499999999887665433    3344589999999999999999987730                       01234


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHH
Q 022042          239 DDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l  287 (303)
                      ++..+.+.+|+..|.....++.+.|..  .+++||++.++++++++|.+.+
T Consensus       134 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l  184 (186)
T 3cm0_A          134 DDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL  184 (186)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHh
Confidence            556788888999888887787777764  3788999999999999998776

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.93  E-value=3.2e-24  Score=179.77  Aligned_cols=184  Identities=29%  Similarity=0.589  Sum_probs=145.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHc-CCcchHHHHHHHHcCCCcChHHHHHHHHHHHcC---
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA-GSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ---  158 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~-~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~---  158 (303)
                      ++++|+|+|+|||||||+|+.|++++|+.+++.|++++..... ++..+..+++++..|...+++....++...+..   
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   81 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA   81 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence            4689999999999999999999999999999999999887654 566788888888888888877655555443322   


Q ss_pred             CCCCCCcEEEcCCCCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhc
Q 022042          159 PDSQENGWLLDGYPRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLT  235 (303)
Q Consensus       159 ~~~~~~~~Vldg~p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~  235 (303)
                      ....+.+||+||+|....+...|...   ...+|++|||++|++++++|+.+|..                       ..
T Consensus        82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~-----------------------~~  138 (196)
T 1tev_A           82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK-----------------------SS  138 (196)
T ss_dssp             HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH-----------------------TS
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc-----------------------cC
Confidence            11235789999999998876655442   23578999999999999999988731                       12


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          236 KRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       236 ~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                      .|.++..+.+.+++..|.....++.++|..  .+++||++.++++++++|.+.+.+
T Consensus       139 ~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  194 (196)
T 1tev_A          139 GRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  194 (196)
T ss_dssp             SCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            345566788889999999999988877754  466899999999999999988864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.90  E-value=2.1e-22  Score=175.84  Aligned_cols=206  Identities=34%  Similarity=0.655  Sum_probs=165.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      +|.+|+|+|++||||||+++.|+++||+..++.+++++.....+...+..+..++..+...++..+.+.+...+...  .
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~--~  103 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR--R  103 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC--T
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--C
Confidence            46799999999999999999999999999999999988765555566777777777787788777777776655443  2


Q ss_pred             CCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----hhhccCC
Q 022042          163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTKRF  238 (303)
Q Consensus       163 ~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~rL~~r~  238 (303)
                      +.+|++||+|+...++..+... ..++++|||+++++++.+|+..|..+..+|+.+.+.+.+|..-.++    +++..+.
T Consensus       104 ~~~~il~g~~~~~~~~~~l~~~-~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld  182 (246)
T 2bbw_A          104 GQHWLLDGFPRTLGQAEALDKI-CEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQE  182 (246)
T ss_dssp             TSCEEEESCCCSHHHHHHHHTT-CCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCG
T ss_pred             CCeEEEECCCCCHHHHHHHHhh-cCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCC
Confidence            5679999999887666555432 3578999999999999999999888888888766656677655555    6666666


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042          239 DDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~~l~  292 (303)
                      .+..+.+.+++..|.+...++.++|..  .++.||++.+ ++|+++|.+++.+.+.
T Consensus       183 ~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~~~  237 (246)
T 2bbw_A          183 DDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNKIT  237 (246)
T ss_dssp             GGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTTSC
T ss_pred             CCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhhCC
Confidence            667888999999998888888888865  5889999988 9999999998877554

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.85  E-value=1.7e-19  Score=147.93  Aligned_cols=173  Identities=19%  Similarity=0.212  Sum_probs=121.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcC----CcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAG----SENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~----~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      ++|+|+|+|||||||+|+.| +++|+.++++++++++.....    .........+....   ++..+...+...+..  
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~--   75 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIY---GDGVVARLCVEELGT--   75 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHH---CTTHHHHHHHHHHCS--
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhC---CHHHHHHHHHHHHHh--
Confidence            58999999999999999999 999999999999999876542    22233333333321   234455566666643  


Q ss_pred             CCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042          161 SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD  240 (303)
Q Consensus       161 ~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d  240 (303)
                      ..+..+|+||+ ....+...+.+....++++|||++|++++.+|+..|...                         ....
T Consensus        76 ~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~-------------------------~~~~  129 (179)
T 3lw7_A           76 SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRS-------------------------DDSK  129 (179)
T ss_dssp             CCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC-----------------------------CC
T ss_pred             cCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCC-------------------------CCcc
Confidence            23678999999 888888888877667889999999999999999988521                         0013


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042          241 TEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL  291 (303)
Q Consensus       241 ~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l  291 (303)
                      ..+.+.+|+.....  .+...++....++||++.+++++.++|.+.+.+++
T Consensus       130 ~~~~~~~r~~~~~~--~~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~l  178 (179)
T 3lw7_A          130 EISELIRRDREELK--LGIGEVIAMADYIITNDSNYEEFKRRCEEVTDRVL  178 (179)
T ss_dssp             CHHHHHHHHHHHHH--HTHHHHHHTCSEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhhhc--cChHhHHHhCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence            35555555533211  11222333345678888899999999999998764

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.79  E-value=2.6e-18  Score=145.88  Aligned_cols=173  Identities=21%  Similarity=0.249  Sum_probs=109.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh--CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH------------H
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY--GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV------------T  150 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l--g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~------------~  150 (303)
                      ++|+|+|++||||||+++.|+++|  |+.++-+.      .+.+++.+..+++++..+..++.....            .
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~------eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~   76 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVL   76 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE------SSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee------CCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999998  45444221      123566777787777776655543321            1


Q ss_pred             HHHHHHcCCCCCCCcEEEcCCC----------C--CHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042          151 MVKERLSQPDSQENGWLLDGYP----------R--SLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTG  215 (303)
Q Consensus       151 ~l~~~l~~~~~~~~~~Vldg~p----------~--~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g  215 (303)
                      .+...+.    .+..+|.|.|.          +  ..++...+..   .+..||++|||++|++++.+|+.+|+...   
T Consensus        77 ~i~p~l~----~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~---  149 (205)
T 4hlc_A           77 KVIPALK----EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQ---  149 (205)
T ss_dssp             THHHHHH----TTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC--------
T ss_pred             HHHHHHH----cCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcc---
Confidence            1222222    25556667532          1  2333333333   45789999999999999999999885210   


Q ss_pred             ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042          216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQ  293 (303)
Q Consensus       216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~  293 (303)
                                      +    |.+......   ++..++.+..+.+.+.+.+++||+++++++|.++|.+.|.+.+++
T Consensus       150 ----------------d----r~e~~~~~f---~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~L~~  204 (205)
T 4hlc_A          150 ----------------N----RLDQEDLKF---HEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEK  204 (205)
T ss_dssp             ----------------------CCHHHHHH---HHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHHHC-
T ss_pred             ----------------c----chhccCHHH---HHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence                            1    111111111   222233344455566667899999999999999999999988753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.78  E-value=5.9e-18  Score=146.16  Aligned_cols=179  Identities=20%  Similarity=0.227  Sum_probs=114.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC--CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHH-HHHHHc-
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG--LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTM-VKERLS-  157 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg--~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~-l~~~l~-  157 (303)
                      .++++|+|+|++||||||+++.|++.++  +.++...      ...+++.+..+++++..+....+....-+ ..++.. 
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~   97 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREH   97 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            4568999999999999999999999996  4444331      23456677888888777654333322111 112221 


Q ss_pred             --CC----CCCCCcEEEc----------CCCCCHHHH--H---HHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042          158 --QP----DSQENGWLLD----------GYPRSLSQA--T---ALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK  216 (303)
Q Consensus       158 --~~----~~~~~~~Vld----------g~p~~~~~~--~---~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~  216 (303)
                        +.    ...+..+|+|          |+++...+.  .   .+...+..||++|||++|++++.+|+.+|...     
T Consensus        98 ~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~-----  172 (229)
T 4eaq_A           98 LVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRD-----  172 (229)
T ss_dssp             CCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCC-----
Confidence              11    0135678889          887654322  2   23345668999999999999999999988411     


Q ss_pred             eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042          217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~  292 (303)
                                        ..+.++....+.+|+..++.   .+.+.|...+++||+++++++|.++|.+.|.+++.
T Consensus       173 ------------------~dr~e~~~~~~~~rv~~~y~---~l~~~~~~~~~vIDa~~s~eev~~~I~~~l~~~l~  227 (229)
T 4eaq_A          173 ------------------QNRLDQEDLKFHEKVIEGYQ---EIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLE  227 (229)
T ss_dssp             --------------------CCCHHHHHHHHHHHHHHH---HHTTTCTTTEEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred             ------------------ccchhhhhHHHHHHHHHHHH---HHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence                              01222223344444444332   33445555788999999999999999999998774

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.78  E-value=1e-17  Score=139.93  Aligned_cols=162  Identities=24%  Similarity=0.375  Sum_probs=104.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHH-----------HH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIV-----------VT  150 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~-----------~~  150 (303)
                      |+|+|+|++||||||+++.|++++   |+.++++++      ..++..+..+.+++..|...++...           ..
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~   74 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE   74 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999998   999998762      1233455666666666644433211           11


Q ss_pred             HHHHHHcCCCCCCCcEEEc----------CCCCCH--HHHHHH---HHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042          151 MVKERLSQPDSQENGWLLD----------GYPRSL--SQATAL---KKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTG  215 (303)
Q Consensus       151 ~l~~~l~~~~~~~~~~Vld----------g~p~~~--~~~~~l---~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g  215 (303)
                      .+...+..    +..+|+|          |+++..  .+...+   ...+..||++|||++|++++.+|+.+|.      
T Consensus        75 ~i~~~l~~----~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~------  144 (195)
T 2pbr_A           75 KIIPDLKR----DKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKN------  144 (195)
T ss_dssp             THHHHHHT----TCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTT------
T ss_pred             HHHHHHhC----CCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccC------
Confidence            12222322    4567777          555532  233322   2334479999999999999999998652      


Q ss_pred             ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHH-HHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLK-THHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~-~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                                           +.+ ..+ +.+++. .|..    ....| +.+++||++.+++++.++|.+.+.++
T Consensus       145 ---------------------~~~-~~~-~~~~~~~~~~~----~~~~~-~~~~~Id~~~~~~~~~~~i~~~l~~~  192 (195)
T 2pbr_A          145 ---------------------RFE-NKE-FLEKVRKGFLE----LAKEE-ENVVVIDASGEEEEVFKEILRALSGV  192 (195)
T ss_dssp             ---------------------CCC-CHH-HHHHHHHHHHH----HHHHS-TTEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred             ---------------------ccc-hHH-HHHHHHHHHHH----HHhhC-CCEEEEECCCCHHHHHHHHHHHHHHH
Confidence                                 111 233 333332 2322    22334 56688999999999999999888654

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=1.1e-17  Score=141.12  Aligned_cols=169  Identities=15%  Similarity=0.188  Sum_probs=107.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      .++.+|+|+|++||||||+++.|++.+|+.+++.|+++....  +    ..+.+++.. +..........++.. +.   
T Consensus        23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~--g----~~i~~~~~~~~~~~~~~~e~~~l~~-l~---   92 (199)
T 3vaa_A           23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF--H----KTVGELFTERGEAGFRELERNMLHE-VA---   92 (199)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--T----SCHHHHHHHHHHHHHHHHHHHHHHH-HT---
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh--C----CcHHHHHHhcChHHHHHHHHHHHHH-Hh---
Confidence            356799999999999999999999999999999999887642  2    222222222 110111111122222 22   


Q ss_pred             CCCCcEEEc---CCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHh-cCCCCCCCCceecccCCCCCchHHHhhhcc
Q 022042          161 SQENGWLLD---GYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV-GRRLDPVTGKIYHVKYSPPETDEIAARLTK  236 (303)
Q Consensus       161 ~~~~~~Vld---g~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~-~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~  236 (303)
                       ....+|++   |.+........+..    ++.+|||++|.+++.+|+. .|...+                     +. 
T Consensus        93 -~~~~~vi~~ggg~~~~~~~~~~l~~----~~~vi~L~~~~e~l~~Rl~~~~~~Rp---------------------~~-  145 (199)
T 3vaa_A           93 -EFENVVISTGGGAPCFYDNMEFMNR----TGKTVFLNVHPDVLFRRLRIAKQQRP---------------------IL-  145 (199)
T ss_dssp             -TCSSEEEECCTTGGGSTTHHHHHHH----HSEEEEEECCHHHHHHHHHHTGGGCG---------------------GG-
T ss_pred             -hcCCcEEECCCcEEccHHHHHHHHc----CCEEEEEECCHHHHHHHHhcCCCCCC---------------------Cc-
Confidence             14567777   34444444444543    6799999999999999998 443111                     11 


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCC-CHHHHHHHHHHHHHHHH
Q 022042          237 RFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSV-NKEDVFAQIDVALTNLL  291 (303)
Q Consensus       237 r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~-s~eev~~~I~~~l~~~l  291 (303)
                       .++..+.+..++..++....+++.   ...++||++. ++++++++|.+.+.+++
T Consensus       146 -~~~~~~~~~~~i~~~~~~r~~~y~---~ad~~Idt~~~s~ee~~~~I~~~l~~~l  197 (199)
T 3vaa_A          146 -QGKEDDELMDFIIQALEKRAPFYT---QAQYIFNADELEDRWQIESSVQRLQELL  197 (199)
T ss_dssp             -TTCCHHHHHHHHHHHHHHHHHHHT---TSSEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred             -CCCChhhHHHHHHHHHHHHHHHHh---hCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence             123345566666666665555443   3456788775 99999999999998875

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.76  E-value=3e-17  Score=140.05  Aligned_cols=178  Identities=17%  Similarity=0.230  Sum_probs=113.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC---CceeehHHHHHHHHHcCCcchHHHHHHHHcCC--CcChHHHH-HH----
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ--LVPDEIVV-TM----  151 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg---~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~--~~~~~~~~-~~----  151 (303)
                      +++++|+|+|++||||||+++.|+++++   +.++.+.    +  ..+++.|+.+++++..+.  .+.+.... -.    
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~----~--p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R   77 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR----E--PGGTPLAERIRELLLAPSDEPMAADTELLLMFAAR   77 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE----S--SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc----C--CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999999999884   4444331    1  246677888888887763  23332211 01    


Q ss_pred             ---HHHHHcCCCCCCCcEEEcCCC------------CCHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCC
Q 022042          152 ---VKERLSQPDSQENGWLLDGYP------------RSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPV  213 (303)
Q Consensus       152 ---l~~~l~~~~~~~~~~Vldg~p------------~~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~  213 (303)
                         +.+.+......+..+|.|.|.            ....+...+..   ....||++|||++|++++.+|+.+|...  
T Consensus        78 ~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~--  155 (213)
T 4edh_A           78 AQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRL--  155 (213)
T ss_dssp             HHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSC--
T ss_pred             HHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc--
Confidence               111111111225667778531            12344444433   3578999999999999999999988410  


Q ss_pred             CCceecccCCCCCchHHHhhhccCCCC-cHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042          214 TGKIYHVKYSPPETDEIAARLTKRFDD-TEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       214 ~g~~~~~~~~~p~~~~i~~rL~~r~~d-~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~  292 (303)
                                        +    +.+. ..+..++..+.|    ..+.+.|...+++||+++++++|.++|.+.|.+++.
T Consensus       156 ------------------d----r~E~~~~~~~~rv~~~y----~~l~~~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~  209 (213)
T 4edh_A          156 ------------------D----RFEQEDRRFFEAVRQTY----LQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLE  209 (213)
T ss_dssp             ------------------C----TTTTSCHHHHHHHHHHH----HHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             ------------------C----cccccHHHHHHHHHHHH----HHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence                              0    1111 123332222233    334455666789999999999999999999998885


Q ss_pred             h
Q 022042          293 Q  293 (303)
Q Consensus       293 ~  293 (303)
                      +
T Consensus       210 ~  210 (213)
T 4edh_A          210 R  210 (213)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.75  E-value=3.1e-17  Score=136.73  Aligned_cols=168  Identities=15%  Similarity=0.178  Sum_probs=98.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHHHH-cCCcchHHHHHHHHcCCCcCh--HHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIA-AGSENGKRAKEHMEKGQLVPD--EIVVTMVKER  155 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~~~~~-~~~~~~~~i~~~~~~g~~~~~--~~~~~~l~~~  155 (303)
                      |++|+|+|+|||||||+++.|+++++     +.+++.++++.+.+. .....+.   ..+  +...+.  ..+...+..+
T Consensus         1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~   75 (194)
T 1nks_A            1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---DEM--RKLSVEKQKKLQIDAAKG   75 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---HHH--TTSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---hhh--hcCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999997     788998998877652 2111110   000  111122  1222222222


Q ss_pred             HcCCC--CCCCcEEEcCCCCCHHH--------HHHHHHhCCCCcEEEEEEcCHHHHHHH-Hhc--CCCCCCCCceecccC
Q 022042          156 LSQPD--SQENGWLLDGYPRSLSQ--------ATALKKYGFQPDLFILLEVPEDTLVER-VVG--RRLDPVTGKIYHVKY  222 (303)
Q Consensus       156 l~~~~--~~~~~~Vldg~p~~~~~--------~~~l~~~~~~pd~vI~L~~~~e~~~~R-l~~--R~~~~~~g~~~~~~~  222 (303)
                      +....  ..+..+|+|+++....+        ...+...  .|+++|||++|++++++| +.+  |...           
T Consensus        76 i~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~l~~~~~~~~~rr~~~~~R~~~-----------  142 (194)
T 1nks_A           76 IAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI--NPSVIFLLEADPKIILSRQKRDTTRNRN-----------  142 (194)
T ss_dssp             HHHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH--CCSEEEEEECCHHHHHHHHHHCTTTCCC-----------
T ss_pred             HHHHhhccCCCEEEECCchhhccccccccCCCHHHHHhc--CCCEEEEEeCCHHHHHHHHHhhcccCCC-----------
Confidence            22211  23677999987432211        1223332  489999999999998866 666  5310           


Q ss_pred             CCCCchHHHhhhccCCCCcHHHH--HHHHHHHHHHHHHHHHHh-hcceEEE-cCCCCHHHHHHHHHHHH
Q 022042          223 SPPETDEIAARLTKRFDDTEEKV--KLRLKTHHHNVEAVLSLY-EDVTVEV-NGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       223 ~~p~~~~i~~rL~~r~~d~~e~~--~~r~~~~~~~~~~~~~~~-~~~~~~I-d~~~s~eev~~~I~~~l  287 (303)
                                     .....+.+  .+++..   .+......| ...+++| |++.++++++++|.+.|
T Consensus       143 ---------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~I~d~~~~~e~v~~~I~~~l  193 (194)
T 1nks_A          143 ---------------DYSDESVILETINFAR---YAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             ---------------CCCSHHHHHHHHHHHH---HHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             ---------------CccCHHHHHHHHHHHH---HHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence                           01112221  122222   222333344 3456788 99999999999998765

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.74  E-value=4.6e-18  Score=146.28  Aligned_cols=175  Identities=19%  Similarity=0.243  Sum_probs=107.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh-------CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY-------GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKE  154 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l-------g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~  154 (303)
                      +++++|+|+|++||||||+++.|++++       |+.++.+    ++  ..+++.|+.+++++.++...+.....-...+
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~   96 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEALLMFAG   96 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            467899999999999999999999988       4433322    11  2466778888888887754333321111111


Q ss_pred             H-------HcCCCCCCCcEEEcCCC------------CCHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCC
Q 022042          155 R-------LSQPDSQENGWLLDGYP------------RSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDP  212 (303)
Q Consensus       155 ~-------l~~~~~~~~~~Vldg~p------------~~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~  212 (303)
                      +       +......+..+|.|.|.            ...++...+..   .+..||++|||++|++++.+|+.+|..  
T Consensus        97 R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~--  174 (227)
T 3v9p_A           97 RREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRM--  174 (227)
T ss_dssp             HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCC--
T ss_pred             HHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccC--
Confidence            1       11111225667788642            12344433333   357899999999999999999988841  


Q ss_pred             CCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          213 VTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       213 ~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                         .               +    +.+.......++.   ++.+..+.+.|...+++||+++++++|.++|.+.|.+
T Consensus       175 ---~---------------d----r~E~~~~ef~~rv---~~~Y~~la~~~~~~~~vIDa~~s~eeV~~~I~~~l~~  226 (227)
T 3v9p_A          175 ---P---------------D----KFESESDAFFART---RAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAA  226 (227)
T ss_dssp             ---C----------------------CCHHHHHHHHH---HHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             ---c---------------c----chhhhhHHHHHHH---HHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence               0               0    1111112222222   2333345556666789999999999999999998875

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.73  E-value=1.2e-17  Score=144.48  Aligned_cols=179  Identities=22%  Similarity=0.227  Sum_probs=105.0

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcC---CCcChHHH---------
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKG---QLVPDEIV---------  148 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g---~~~~~~~~---------  148 (303)
                      .+++++|+|+|++||||||+++.|++.++...++...+.++  ..+++.|+.+++++..+   ..+.....         
T Consensus        24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~  101 (236)
T 3lv8_A           24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARV  101 (236)
T ss_dssp             --CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHH
Confidence            34568999999999999999999999884322221111121  24677888888887532   22332211         


Q ss_pred             ---HHHHHHHHcCCCCCCCcEEEcCC----------CC--CHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042          149 ---VTMVKERLSQPDSQENGWLLDGY----------PR--SLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRL  210 (303)
Q Consensus       149 ---~~~l~~~l~~~~~~~~~~Vldg~----------p~--~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~  210 (303)
                         ...+...+.    .+..+|.|.|          .+  ...+...+..   ....||++|||++|++++++|+.+|..
T Consensus       102 ~~~~~~I~paL~----~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~  177 (236)
T 3lv8_A          102 QLVENVIKPALA----RGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGE  177 (236)
T ss_dssp             HHHHHTHHHHHH----TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----C
T ss_pred             HHHHHHHHHHHH----cCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence               111222222    2566777853          11  2333333332   357899999999999999999998841


Q ss_pred             CCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          211 DPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       211 ~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                      .                    +++..   ...+. .+|+..   .+..+.+.+.. +++||+++++++|.++|.+.|.++
T Consensus       178 ~--------------------dr~E~---~~~~~-~~rv~~---~y~~la~~~~~-~~vIDa~~sieeV~~~I~~~l~~~  229 (236)
T 3lv8_A          178 L--------------------DRIEK---MDISF-FERARE---RYLELANSDDS-VVMIDAAQSIEQVTADIRRALQDW  229 (236)
T ss_dssp             C--------------------CTTTT---SCHHH-HHHHHH---HHHHHHHHCTT-EEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             c--------------------chhhh---hHHHH-HHHHHH---HHHHHHHHCCC-EEEEeCCCCHHHHHHHHHHHHHHH
Confidence            0                    01110   11222 222322   22233444444 889999999999999999999998


Q ss_pred             HHh
Q 022042          291 LEQ  293 (303)
Q Consensus       291 l~~  293 (303)
                      +.+
T Consensus       230 l~~  232 (236)
T 3lv8_A          230 LSQ  232 (236)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            855

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.73  E-value=1.7e-17  Score=141.55  Aligned_cols=173  Identities=17%  Similarity=0.224  Sum_probs=108.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CC-ceeehHHHHHHHHHcCCcchHHHHHHHHcC-----CCcChHHH-----
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY---GL-VHIAAGDLLRAEIAAGSENGKRAKEHMEKG-----QLVPDEIV-----  148 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l---g~-~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g-----~~~~~~~~-----  148 (303)
                      ++++|+|+|++||||||+++.|++++   |+ .++-+    ++  +.+++.|+.+++++...     ..+.+...     
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~   75 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT----RE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFY   75 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE----ES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee----eC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHH
Confidence            46799999999999999999999988   44 22211    11  34677888888887732     22332211     


Q ss_pred             -------HHHHHHHHcCCCCCCCcEEEcCCC------------CCHHHHHHHH---HhCCCCcEEEEEEcCHHHHHHHHh
Q 022042          149 -------VTMVKERLSQPDSQENGWLLDGYP------------RSLSQATALK---KYGFQPDLFILLEVPEDTLVERVV  206 (303)
Q Consensus       149 -------~~~l~~~l~~~~~~~~~~Vldg~p------------~~~~~~~~l~---~~~~~pd~vI~L~~~~e~~~~Rl~  206 (303)
                             ...+...+.    .+..+|.|.|.            ....+...+.   ..+..||++|||++|++++++|+.
T Consensus        76 A~R~~~~~~~i~paL~----~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~  151 (213)
T 4tmk_A           76 AARVQLVETVIKPALA----NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRAR  151 (213)
T ss_dssp             HHHHHHHHHTHHHHHH----TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHH
Confidence                   112222332    25667777531            1234443333   345789999999999999999999


Q ss_pred             cCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHH
Q 022042          207 GRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVA  286 (303)
Q Consensus       207 ~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~  286 (303)
                      +|...                    ++...   ...+..++..+.|..    +.+.+ ..+++||+++++++|.++|.+.
T Consensus       152 ~R~~~--------------------dr~E~---~~~~f~~rv~~~y~~----la~~~-~~~~vIDa~~s~eeV~~~I~~~  203 (213)
T 4tmk_A          152 ARGEL--------------------DRIEQ---ESFDFFNRTRARYLE----LAAQD-KSIHTIDATQPLEAVMDAIRTT  203 (213)
T ss_dssp             HHSSC--------------------CTTTT---SCHHHHHHHHHHHHH----HHHTC-TTEEEEETTSCHHHHHHHHHHH
T ss_pred             hcCCc--------------------cchhh---hHHHHHHHHHHHHHH----HHHHC-CcEEEECCCCCHHHHHHHHHHH
Confidence            88410                    01110   123333332323332    23333 5688999999999999999999


Q ss_pred             HHHHHHh
Q 022042          287 LTNLLEQ  293 (303)
Q Consensus       287 l~~~l~~  293 (303)
                      |.+++.+
T Consensus       204 l~~~l~~  210 (213)
T 4tmk_A          204 VTHWVKE  210 (213)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998854

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.73  E-value=6.3e-17  Score=136.58  Aligned_cols=161  Identities=23%  Similarity=0.210  Sum_probs=106.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHH---HHHHHHHHHcCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI---VVTMVKERLSQP  159 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~l~~~l~~~  159 (303)
                      .|++|+|+|++||||||+++.|++.+|+.+++.|++......          .....+....+..   ....+...+   
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~l~~~~---   83 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENI----------RKMSEGIPLTDDDRWPWLAAIGERL---   83 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHH----------HHHHHTCCCCHHHHHHHHHHHHHHH---
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhH----------HHHhcCCCCCchhhHHHHHHHHHHH---
Confidence            356899999999999999999999999999999887532110          1122232222221   222333333   


Q ss_pred             CCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042          160 DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD  239 (303)
Q Consensus       160 ~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~  239 (303)
                       ..+..+|+|+..........+......++.+|||++|.+++.+|+.+|..+                           .
T Consensus        84 -~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~---------------------------~  135 (202)
T 3t61_A           84 -ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGH---------------------------F  135 (202)
T ss_dssp             -TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSS---------------------------C
T ss_pred             -hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhcc---------------------------C
Confidence             236779999876677777777776656789999999999999999987421                           0


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          240 DTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       240 d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                      ...+.+...+..+    .+.  ......++||++.++++++++|.+.|.+.
T Consensus       136 ~~~~~~~~~~~~~----~~~--~~~~~~~~Id~~~~~~e~~~~I~~~l~~~  180 (202)
T 3t61_A          136 MPSSLLQTQLETL----EDP--RGEVRTVAVDVAQPLAEIVREALAGLARL  180 (202)
T ss_dssp             CCHHHHHHHHHHC----CCC--TTSTTEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhc----CCC--CCCCCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence            1122222222221    111  11224678999999999999999998754

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.71  E-value=3.9e-16  Score=127.74  Aligned_cols=152  Identities=12%  Similarity=0.054  Sum_probs=97.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      |++|+|+|++||||||+++.|++++|+.+++.|.+.....        .+...+.            . ...+..    +
T Consensus         1 M~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~--------~~~~~~~------------~-~~~l~~----~   55 (173)
T 3kb2_A            1 MTLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS--------GNEKLFE------------H-FNKLAD----E   55 (173)
T ss_dssp             -CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT--------CHHHHHH------------H-HHHHTT----C
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh--------HHHHHHH------------H-HHHHHh----C
Confidence            4589999999999999999999999999999987765421        0011111            0 111211    3


Q ss_pred             CcEEEcCC---------------CCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCch
Q 022042          164 NGWLLDGY---------------PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETD  228 (303)
Q Consensus       164 ~~~Vldg~---------------p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~  228 (303)
                      ..+|.|.+               .........+......|+++|||++|++++.+|+.+|..+                 
T Consensus        56 ~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~-----------------  118 (173)
T 3kb2_A           56 DNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDE-----------------  118 (173)
T ss_dssp             CSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCS-----------------
T ss_pred             CCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCc-----------------
Confidence            34555521               1123344444444456899999999999999999887311                 


Q ss_pred             HHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCC-CCHHHHHHHHHHHHHHHH
Q 022042          229 EIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVALTNLL  291 (303)
Q Consensus       229 ~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~-~s~eev~~~I~~~l~~~l  291 (303)
                                ....+...    ...+.+......|....++||++ .+++++.++|.+.++.+.
T Consensus       119 ----------~~~~~~~~----~~~~~~~~~~~~~~~~~~~id~~~~~~~ev~~~I~~~~~~~~  168 (173)
T 3kb2_A          119 ----------YIEGKDID----SILELYREVMSNAGLHTYSWDTGQWSSDEIAKDIIFLVELEH  168 (173)
T ss_dssp             ----------CCCHHHHH----HHHHHHHHHHHTCSSCEEEEETTTSCHHHHHHHHHHHHHHGG
T ss_pred             ----------chhhhHHH----HHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHhCCC
Confidence                      11122222    22233334455566677889998 599999999999988754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.71  E-value=1.6e-16  Score=133.85  Aligned_cols=170  Identities=16%  Similarity=0.175  Sum_probs=105.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH-----------H
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV-----------T  150 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~-----------~  150 (303)
                      ++++|+|+|++||||||+++.|+++| |+.+++.+...     .++..+..+++++..+.........           .
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~   77 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFAS   77 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            56799999999999999999999998 67777653211     1233556666666554333332110           1


Q ss_pred             HHHHHHcCCCCCCCcEEEcCCCCC-----------HHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceec
Q 022042          151 MVKERLSQPDSQENGWLLDGYPRS-----------LSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYH  219 (303)
Q Consensus       151 ~l~~~l~~~~~~~~~~Vldg~p~~-----------~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~  219 (303)
                      .+...+.    .+..+|+|+|+..           ......+......||++|||++|++++.+   +|..+        
T Consensus        78 ~i~~~l~----~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d--------  142 (204)
T 2v54_A           78 FIQEQLE----QGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGEE--------  142 (204)
T ss_dssp             HHHHHHH----TTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSSS--------
T ss_pred             HHHHHHH----CCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCcc--------
Confidence            1122222    2566888987643           22222233233469999999999998877   44211        


Q ss_pred             ccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHhh
Q 022042          220 VKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQR  294 (303)
Q Consensus       220 ~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~~  294 (303)
                                   +    .+  .+.+.+|+..++..   ....+...+++||++.++++++++|.+.+.+.+...
T Consensus       143 -------------~----~e--~~~~~~rl~~~y~~---~~~~~~~~~~~Id~~~~~~~v~~~i~~~l~~~l~~~  195 (204)
T 2v54_A          143 -------------I----YE--DVTFQQKVLQEYKK---MIEEGDIHWQIISSEFEEDVKKELIKNIVIEAIHTV  195 (204)
T ss_dssp             -------------T----TC--CSHHHHHHHHHHHH---HHTTCSSCEEEECTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             -------------c----cc--HHHHHHHHHHHHHH---HHHhCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhc
Confidence                         0    01  01334444443222   122333466889999999999999999999887653

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.71  E-value=1.2e-18  Score=147.94  Aligned_cols=175  Identities=16%  Similarity=0.156  Sum_probs=104.5

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHH------
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKE------  154 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~------  154 (303)
                      ++++++|+|+|++||||||+++.|+++++..+++++ ++++. ..+++.+..+++++..+..+++.....++..      
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK-HLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHM   84 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE-EEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            345789999999999999999999999876666552 22210 1134455666666655544444322221110      


Q ss_pred             -HHcCCCCCCCcEEEcCCCCCH--HH-------HHHHH---HhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceeccc
Q 022042          155 -RLSQPDSQENGWLLDGYPRSL--SQ-------ATALK---KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVK  221 (303)
Q Consensus       155 -~l~~~~~~~~~~Vldg~p~~~--~~-------~~~l~---~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~  221 (303)
                       .+......+..+|+|+|+...  .+       ..++.   .....||++|||++|++++.+|+.+|.            
T Consensus        85 ~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~------------  152 (212)
T 2wwf_A           85 NEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGE------------  152 (212)
T ss_dssp             HHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTS------------
T ss_pred             HHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCc------------
Confidence             111111125678999986431  11       11221   112468999999999999999986542            


Q ss_pred             CCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          222 YSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       222 ~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                                +    +.++  +.+.+++...+.....     ...+++||++.+++++.++|.+.+.++
T Consensus       153 ----------~----r~~~--~~~~~~~~~~~~~~~~-----~~~~~~Id~~~~~~~~~~~i~~~l~~~  200 (212)
T 2wwf_A          153 ----------E----IYEK--VETQKKIYETYKHFAH-----EDYWINIDATRKIEDIHNDIVKEVTKI  200 (212)
T ss_dssp             ----------S----TTCS--HHHHHHHHHHGGGGTT-----CTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred             ----------c----cccH--HHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence                      0    1111  2334444333222111     234678999999999999999988765

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.70  E-value=6.2e-17  Score=134.80  Aligned_cols=117  Identities=15%  Similarity=0.270  Sum_probs=70.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcC--hHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP--DEIVVTMVKERL  156 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~--~~~~~~~l~~~l  156 (303)
                      +++|+|+|+|||||||+++.|++++|     +.+++.++++++......... ...+.   .....  ...+...+.+.+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~i   78 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVS-DRDQM---RKMDPETQKRIQKMAGRKI   78 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCS-SGGGG---SSCCHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCC-CHHHH---hcCCHHHHHHHHHHHHHHH
Confidence            57899999999999999999999998     999999999887654321100 00000   00000  111111222222


Q ss_pred             cCCCCCCCcEEEcCCCCCHH--HH------HHHHHhCCCCcEEEEEEcCHHHHHH-HHhc
Q 022042          157 SQPDSQENGWLLDGYPRSLS--QA------TALKKYGFQPDLFILLEVPEDTLVE-RVVG  207 (303)
Q Consensus       157 ~~~~~~~~~~Vldg~p~~~~--~~------~~l~~~~~~pd~vI~L~~~~e~~~~-Rl~~  207 (303)
                      .... .++.+|+||++....  ..      ..+...  .||++|||++|++++++ |+.+
T Consensus        79 ~~~~-~~~~viid~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~~~~~rRl~~  135 (192)
T 1kht_A           79 AEMA-KESPVAVDTHSTVSTPKGYLPGLPSWVLNEL--NPDLIIVVETTGDEILMRRMSD  135 (192)
T ss_dssp             HHHH-TTSCEEEECCSEEEETTEEEESSCHHHHHHH--CCSEEEEEECCHHHHHHHHHTS
T ss_pred             Hhhc-cCCeEEEccceeccccccccccCcHHHHhcc--CCCEEEEEeCCHHHHHHHHhhh
Confidence            2111 245799998653100  00      112222  37899999999999996 8877

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.70  E-value=3.9e-16  Score=131.63  Aligned_cols=165  Identities=22%  Similarity=0.309  Sum_probs=101.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHH----------HHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI----------VVTM  151 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~----------~~~~  151 (303)
                      |+|+|+|+.||||||+++.|+++|   |..++-+.      .+.+++.+..+++++......+...          ....
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr------eP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~   74 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR------EPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE   74 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE------SSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE------CCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999988   56555321      1234555666666655543332221          1122


Q ss_pred             HHHHHcCCCCCCCcEEEcCCC------------CCHHHHHH---HHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042          152 VKERLSQPDSQENGWLLDGYP------------RSLSQATA---LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK  216 (303)
Q Consensus       152 l~~~l~~~~~~~~~~Vldg~p------------~~~~~~~~---l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~  216 (303)
                      +...+.    .+..+|.|.|.            ........   +...+..||++|||++|+++..+|..++.       
T Consensus        75 I~~~L~----~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d-------  143 (197)
T 3hjn_A           75 IKQYLS----EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN-------  143 (197)
T ss_dssp             HHHHHT----TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C-------
T ss_pred             HHHHHH----CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcC-------
Confidence            233332    25567777542            12233332   33346789999999999999999954431       


Q ss_pred             eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042          217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL  291 (303)
Q Consensus       217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l  291 (303)
                                          |.. ..+..+    ..++.+..+.+.+.+.+++||+++++++|.++|.+.|++.+
T Consensus       144 --------------------r~e-~~ef~~----rv~~~y~~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~rl  193 (197)
T 3hjn_A          144 --------------------RFE-KREFLE----RVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRRW  193 (197)
T ss_dssp             --------------------TTC-CHHHHH----HHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHSCC-
T ss_pred             --------------------ccc-cHHHHH----HHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence                                111 123222    22233344556677778999999999999999999987644

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.69  E-value=6.5e-16  Score=130.71  Aligned_cols=178  Identities=14%  Similarity=0.168  Sum_probs=100.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCc--eeehHHHHHHHHHcCCcchHHHHHHHHcCCC---cChHHH---------
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLV--HIAAGDLLRAEIAAGSENGKRAKEHMEKGQL---VPDEIV---------  148 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~--~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~---~~~~~~---------  148 (303)
                      ++++|+|+|+|||||||+++.|+++++..  ++..+          .+.+..+++++..+..   ......         
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~   72 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTE----------WNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFS   72 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEE----------TTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEec----------CCcHHHHHHHHhccccccCCCHHHHHHHHHHHHH
Confidence            56799999999999999999999999863  44311          0122223333322211   111100         


Q ss_pred             ---HHHHHHHHcCCCCCCCcEEEcCCCCCH-----------HHHHHHHHhCCCCcEEEEEEcCHHHHHHHHh-cCCCCCC
Q 022042          149 ---VTMVKERLSQPDSQENGWLLDGYPRSL-----------SQATALKKYGFQPDLFILLEVPEDTLVERVV-GRRLDPV  213 (303)
Q Consensus       149 ---~~~l~~~l~~~~~~~~~~Vldg~p~~~-----------~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~-~R~~~~~  213 (303)
                         ...+...+.    .+..+|+|+|+...           .....+......+|++|||++|++++.+|+. +|..   
T Consensus        73 ~~~~~~i~~~l~----~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~---  145 (213)
T 2plr_A           73 DRYERYILPMLK----SGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRK---  145 (213)
T ss_dssp             HHHHHTHHHHHH----TTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCC---
T ss_pred             HHHHHHHHHHHh----CCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccc---
Confidence               011112222    25678999987542           1122233333458999999999999999998 7741   


Q ss_pred             CCceecccCCCCCchHHHhhhccCCC--CcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042          214 TGKIYHVKYSPPETDEIAARLTKRFD--DTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL  291 (303)
Q Consensus       214 ~g~~~~~~~~~p~~~~i~~rL~~r~~--d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l  291 (303)
                      .++ ++...          .+..+.+  +..+.+.+|+..++...   .+.+  .+++||++.++++++++|.+.+.+++
T Consensus       146 ~~~-~~~g~----------~~~~~~d~~e~~~~~~~r~~~~~~~~---~~~~--~~~~Id~~~~~e~v~~~I~~~l~~~~  209 (213)
T 2plr_A          146 IKP-QEAGA----------DIFPGLSPEEGFLKYQGLITEVYDKL---VKDE--NFIVIDGTKTPKEIQIQIRKFVGELI  209 (213)
T ss_dssp             CCT-TTTTT----------TTCTTSCHHHHHHHHHHHHHHHHHHH---TTTT--TCEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             ccc-ccccc----------ccccccchhhhHHHHHHHHHHHHHHH---HhhC--CEEEEECCCCHHHHHHHHHHHHHHHh
Confidence            011 00000          0000001  01123444444333222   1222  56889999999999999999998876


Q ss_pred             Hh
Q 022042          292 EQ  293 (303)
Q Consensus       292 ~~  293 (303)
                      ..
T Consensus       210 ~~  211 (213)
T 2plr_A          210 DN  211 (213)
T ss_dssp             HT
T ss_pred             hc
Confidence            53

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.69  E-value=1.5e-16  Score=135.09  Aligned_cols=176  Identities=23%  Similarity=0.208  Sum_probs=99.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH-----------H
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV-----------T  150 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~-----------~  150 (303)
                      +++++|+|+|++||||||+++.|+++++..+++++.+ ++. ..+++.+..+++++..+..+++....           .
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~-~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~   84 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL-RFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVP   84 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE-ESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe-eCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999886444333211 000 00233455555566544333433211           1


Q ss_pred             HHHHHHcCCCCCCCcEEEcCCC------------CCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCcee
Q 022042          151 MVKERLSQPDSQENGWLLDGYP------------RSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIY  218 (303)
Q Consensus       151 ~l~~~l~~~~~~~~~~Vldg~p------------~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~  218 (303)
                      .+...+.    .+..+|+|.+.            ........+......||++|||++|++++.+|+.+|. +       
T Consensus        85 ~i~~~l~----~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~-~-------  152 (215)
T 1nn5_A           85 LIKEKLS----QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGH-E-------  152 (215)
T ss_dssp             HHHHHHH----TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC------C-------
T ss_pred             HHHHHHH----CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc-c-------
Confidence            1222222    25668888532            1122222222222468999999999999999986331 1       


Q ss_pred             cccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHhh
Q 022042          219 HVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQR  294 (303)
Q Consensus       219 ~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~~  294 (303)
                                        +.+. . ...+++...+.   .+...+...+++||++.++++++++|.+.+.+++...
T Consensus       153 ------------------~~~~-~-~~~~~~~~~~~---~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~~~  205 (215)
T 1nn5_A          153 ------------------RYEN-G-AFQERALRCFH---QLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATA  205 (215)
T ss_dssp             ------------------TTCS-H-HHHHHHHHHHH---HHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHHHG
T ss_pred             ------------------ccch-H-HHHHHHHHHHH---HHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhhc
Confidence                              1111 1 22233322211   1112223356789999999999999999999888753

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.69  E-value=4e-16  Score=129.60  Aligned_cols=167  Identities=14%  Similarity=0.098  Sum_probs=98.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      +++|+|+|++||||||+++.|++++|+.+++.|+++.+..  +...    .+++.. |...........+......    
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~--g~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~----   74 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT--GADI----AWIFEMEGEAGFRRREREMIEALCKL----   74 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH--TSCH----HHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc--CCCh----hhHHHHhCHHHHHHHHHHHHHHHHhc----
Confidence            5689999999999999999999999999999999987642  2222    222221 1111112222222222221    


Q ss_pred             CCcEEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHH--hcCCCCCCCCceecccCCCCCchHHHhhhccCC
Q 022042          163 ENGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV--VGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF  238 (303)
Q Consensus       163 ~~~~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl--~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~  238 (303)
                      ...+|..|  ..........+...    .++|||++|++++.+|+  ..+..                          |+
T Consensus        75 ~~~vi~~gg~~~~~~~~~~~l~~~----~~vi~L~~~~e~l~~Rl~~~~~~~--------------------------rp  124 (185)
T 3trf_A           75 DNIILATGGGVVLDEKNRQQISET----GVVIYLTASIDTQLKRIGQKGEMR--------------------------RP  124 (185)
T ss_dssp             SSCEEECCTTGGGSHHHHHHHHHH----EEEEEEECCHHHHHHHHHCCTTCS--------------------------SC
T ss_pred             CCcEEecCCceecCHHHHHHHHhC----CcEEEEECCHHHHHHHHhhcCCCC--------------------------CC
Confidence            23344444  33344444555543    38999999999999999  43321                          11


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCC-CHHHHHHHHHHHHHHHHH
Q 022042          239 DDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSV-NKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~-s~eev~~~I~~~l~~~l~  292 (303)
                      ....+....+++.......+++..+  ..++||++. ++++++++|.+.+...+.
T Consensus       125 ~~~~~~~~~~l~~~~~~r~~~y~~~--ad~~Idt~~~~~~e~~~~I~~~l~~~~~  177 (185)
T 3trf_A          125 LFIKNNSKEKLQQLNEIRKPLYQAM--ADLVYPTDDLNPRQLATQILVDIKQTYS  177 (185)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHH--CSEEEECTTCCHHHHHHHHHHHSCC---
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhc--CCEEEECCCCCHHHHHHHHHHHHHHHhh
Confidence            1112222334444444444444332  235677775 899999999998876654

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.69  E-value=1e-15  Score=129.63  Aligned_cols=172  Identities=15%  Similarity=0.161  Sum_probs=115.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC-----cCh-----------
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VPD-----------  145 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~-----~~~-----------  145 (303)
                      ..|.-|+|+|.+||||||+++.|++ +|+++|++|.+.++....+.+....+.+.+.....     +..           
T Consensus         7 ~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~   85 (210)
T 4i1u_A            7 HHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDE   85 (210)
T ss_dssp             CSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCH
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCH
Confidence            4567899999999999999999988 99999999999999887776666666655533221     211           


Q ss_pred             -------HHHHHHH----HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCC
Q 022042          146 -------EIVVTMV----KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVT  214 (303)
Q Consensus       146 -------~~~~~~l----~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~  214 (303)
                             .++...+    ...+...  ....+|+|. |.-.+... +..   .+|.+|+++||++++++|+.+|.     
T Consensus        86 ~~~~~L~~i~HP~I~~~~~~~~~~~--~~~~vv~d~-pLL~E~~~-~~~---~~D~vi~V~ap~e~r~~Rl~~Rd-----  153 (210)
T 4i1u_A           86 DARRRLEAITHPLIRAETEREARDA--QGPYVIFVV-PLLVESRN-WKA---RCDRVLVVDCPVDTQIARVMQRN-----  153 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTC--CSSSEEEEC-TTCTTCHH-HHH---HCSEEEEEECCHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhc--CCCEEEEEE-ecccccCC-ccc---cCCeEEEEECCHHHHHHHHHhcC-----
Confidence                   1122222    2333332  234567775 32222011 222   37899999999999999999884     


Q ss_pred             CceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCC-CCHHHHHHHHHHHHHHHHHh
Q 022042          215 GKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVALTNLLEQ  293 (303)
Q Consensus       215 g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~-~s~eev~~~I~~~l~~~l~~  293 (303)
                                              ..+.+.+.+|+..+....    +.+...-++|+++ ++++++.++|.+.+.+++..
T Consensus       154 ------------------------g~s~eea~~ri~~Q~~~e----ek~~~AD~VIdN~~gsle~l~~qV~~l~~~~~~~  205 (210)
T 4i1u_A          154 ------------------------GFTREQVEAIIARQATRE----ARLAAADDVIVNDAATPDALAVQVDALHQRYLAF  205 (210)
T ss_dssp             ------------------------CCCHHHHHHHHHHSCCHH----HHHHTCSEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------CCCHHHHHHHHHHcCChH----HHHHhCCEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence                                    123566666665543321    2222234678999 99999999999999988764


Q ss_pred             h
Q 022042          294 R  294 (303)
Q Consensus       294 ~  294 (303)
                      .
T Consensus       206 ~  206 (210)
T 4i1u_A          206 A  206 (210)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.68  E-value=2.2e-15  Score=123.49  Aligned_cols=162  Identities=12%  Similarity=0.092  Sum_probs=97.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      |++|+|+|++||||||+++.|++++|+.+++.|++++..  .+......+..   .+.......... +...+.     .
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~--~g~~~~~~~~~---~~~~~~~~~~~~-~~~~l~-----~   70 (173)
T 1e6c_A            2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT--SGMTVADVVAA---EGWPGFRRRESE-ALQAVA-----T   70 (173)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH--HCSCHHHHHHH---HHHHHHHHHHHH-HHHHHC-----C
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH--hCCCHHHHHHH---cCHHHHHHHHHH-HHHHhh-----c
Confidence            358999999999999999999999999999999998764  22222221111   111011111111 122232     2


Q ss_pred             CcEEEc-C--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHh--cCCCCCCCCceecccCCCCCchHHHhhhccCC
Q 022042          164 NGWLLD-G--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV--GRRLDPVTGKIYHVKYSPPETDEIAARLTKRF  238 (303)
Q Consensus       164 ~~~Vld-g--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~--~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~  238 (303)
                      ..+|++ |  ++........+..    ++++|||++|++++.+|+.  +|..+                         +.
T Consensus        71 ~~~vi~~g~~~~~~~~~~~~l~~----~~~~i~l~~~~e~~~~R~~~~~r~~~-------------------------r~  121 (173)
T 1e6c_A           71 PNRVVATGGGMVLLEQNRQFMRA----HGTVVYLFAPAEELALRLQASLQAHQ-------------------------RP  121 (173)
T ss_dssp             SSEEEECCTTGGGSHHHHHHHHH----HSEEEEEECCHHHHHHHHHHHHCSCC-------------------------CC
T ss_pred             CCeEEECCCcEEeCHHHHHHHHc----CCeEEEEECCHHHHHHHHhhccCCCC-------------------------CC
Confidence            345554 4  2223333344442    5799999999999999998  77311                         11


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCC-CCHHHHHHHHHHHHH
Q 022042          239 DDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVALT  288 (303)
Q Consensus       239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~-~s~eev~~~I~~~l~  288 (303)
                      ....+...+++..++....+....   ..++||++ .+++++.++|.+.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~~~~~~~~~~~i~~~l~  169 (173)
T 1e6c_A          122 TLTGRPIAEEMEAVLREREALYQD---VAHYVVDATQPPAAIVCELMQTMR  169 (173)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHH---HCSEEEETTSCHHHHHHHHHHHTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHh---CcEEEECCCCCHHHHHHHHHHHhc
Confidence            111233344555555444433222   23578888 899999999887763

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.68  E-value=2.5e-16  Score=131.41  Aligned_cols=121  Identities=16%  Similarity=0.168  Sum_probs=76.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS  161 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~  161 (303)
                      ..+++|+|+|+|||||||+++.|++++|+.+++.|.+...........+......+...   ....+...+...+.    
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~----   75 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGAT---AIMMLYHTAATILQ----   75 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHHH---HHHHHHHHHHHHHH----
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhHH---HHHHHHHHHHHHHh----
Confidence            35679999999999999999999999999999998876543321000011000000000   00111122222232    


Q ss_pred             CCCcEEEcCCCCCHHH---HHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          162 QENGWLLDGYPRSLSQ---ATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       162 ~~~~~Vldg~p~~~~~---~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      .+.++|+|++......   ...+...+..++++|||++|++++.+|+.+|.
T Consensus        76 ~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~  126 (193)
T 2rhm_A           76 SGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRI  126 (193)
T ss_dssp             TTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence            2678999997632222   22244455678899999999999999998874

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.68  E-value=5.5e-16  Score=131.13  Aligned_cols=167  Identities=16%  Similarity=0.171  Sum_probs=96.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC-----cC--------------
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VP--------------  144 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~-----~~--------------  144 (303)
                      |++|+|+|++||||||+++.|++ +|+.+++.|++.+.....+......+.+.+.....     +.              
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~   80 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED   80 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence            36899999999999999999988 99999999999876433222111112111111100     00              


Q ss_pred             ----hHH----HHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042          145 ----DEI----VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK  216 (303)
Q Consensus       145 ----~~~----~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~  216 (303)
                          ...    +...+.+.+...  .+.++|+|+. ...+. . +.   ...|.+|||++|++++.+|+.+|.     | 
T Consensus        81 ~~~l~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~-~l~e~-~-~~---~~~d~vi~l~~~~e~~~~Rl~~R~-----~-  146 (206)
T 1jjv_A           81 KLWLNNLLHPAIRERMKQKLAEQ--TAPYTLFVVP-LLIEN-K-LT---ALCDRILVVDVSPQTQLARSAQRD-----N-  146 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTC--CSSEEEEECT-TTTTT-T-CG---GGCSEEEEEECCHHHHHHHHC----------
T ss_pred             HHHHHhccCHHHHHHHHHHHHhc--CCCEEEEEec-hhhhc-C-cH---hhCCEEEEEECCHHHHHHHHHHcC-----C-
Confidence                001    111112223222  2457888873 21111 0 11   136899999999999999998874     1 


Q ss_pred             eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHH----HHHHHHHHHHHHHHH
Q 022042          217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKE----DVFAQIDVALTNLLE  292 (303)
Q Consensus       217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~e----ev~~~I~~~l~~~l~  292 (303)
                                             ...+.+.+|+..... ..+   .|...-++||++++++    ++.++|.+.+.+++.
T Consensus       147 -----------------------~~~e~~~~r~~~q~~-~~~---~~~~ad~vIdn~~~~~~~~~~~~~~i~~~~~~~~~  199 (206)
T 1jjv_A          147 -----------------------NNFEQIQRIMNSQVS-QQE---RLKWADDVINNDAELAQNLPHLQQKVLELHQFYLQ  199 (206)
T ss_dssp             ------------------------CHHHHHHHHHHSCC-HHH---HHHHCSEEEECCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------CCHHHHHHHHHhcCC-hHH---HHHhCCEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence                                   124445555543211 111   2222236788988999    999999999887665

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.67  E-value=1.9e-16  Score=135.68  Aligned_cols=177  Identities=16%  Similarity=0.153  Sum_probs=97.4

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHhCC-ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHH----------
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKYGL-VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIV----------  148 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~lg~-~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~----------  148 (303)
                      ...++++|+|+|++||||||+++.|+++++. ..+++-.+.+  .+.++++++.+++++...........          
T Consensus        17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tr--eP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~   94 (223)
T 3ld9_A           17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTR--EPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRRE   94 (223)
T ss_dssp             --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEE--SSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeee--CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            3456789999999999999999999998754 2111100000  12355667777777664222332221          


Q ss_pred             --HHHHHHHHcCCCCCCCcEEEcCCC------------CCHHHHHHHHHhC--CCCcEEEEEEcCHHHHHHHHhcCCCCC
Q 022042          149 --VTMVKERLSQPDSQENGWLLDGYP------------RSLSQATALKKYG--FQPDLFILLEVPEDTLVERVVGRRLDP  212 (303)
Q Consensus       149 --~~~l~~~l~~~~~~~~~~Vldg~p------------~~~~~~~~l~~~~--~~pd~vI~L~~~~e~~~~Rl~~R~~~~  212 (303)
                        ...+...+.    .+..+|.|.|.            ...++...+....  ..||++|||++|++++.+|+ +|.   
T Consensus        95 ~~~~~I~paL~----~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~rd---  166 (223)
T 3ld9_A           95 HFVKIIKPSLM----QKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CKN---  166 (223)
T ss_dssp             HHHHTHHHHHH----TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC---------------
T ss_pred             HHHHHHHHHHh----cCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-ccC---
Confidence              111222222    25567778642            2334444443322  58999999999999999998 331   


Q ss_pred             CCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042          213 VTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       213 ~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~  292 (303)
                                          |...   ...+. .+|+.   +.+..+.+.|...+++||+++++++| ++|.+.|.+++.
T Consensus       167 --------------------r~E~---~~~e~-~~rv~---~~y~~la~~~~~~~~vIDa~~sieeV-~~I~~~l~~~lg  218 (223)
T 3ld9_A          167 --------------------GYEF---ADMEF-YYRVR---DGFYDIAKKNPHRCHVITDKSETYDI-DDINFVHLEVIK  218 (223)
T ss_dssp             ----------------------------CHHH-HHHHH---HHHHHHHHHCTTTEEEEESSCSSSCC-CHHHHHHHHHHH
T ss_pred             --------------------cccc---chHHH-HHHHH---HHHHHHHHHCCCCEEEEcCCCCHHHH-HHHHHHHHHHHh
Confidence                                1110   11222 22222   33334455566678999999999999 999999999886


Q ss_pred             hh
Q 022042          293 QR  294 (303)
Q Consensus       293 ~~  294 (303)
                      ..
T Consensus       219 ~~  220 (223)
T 3ld9_A          219 VL  220 (223)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.66  E-value=2.8e-16  Score=134.12  Aligned_cols=168  Identities=15%  Similarity=0.211  Sum_probs=100.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcC-----CCcChHH----------
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKG-----QLVPDEI----------  147 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g-----~~~~~~~----------  147 (303)
                      ++++|+|+|++||||||+++.|++ +|+.+++.|++.+.....+......+.+.+...     ..+....          
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~   81 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE   81 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence            467999999999999999999998 999999999998875443333333333332111     0111111          


Q ss_pred             --------HHHHHH----HHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042          148 --------VVTMVK----ERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTG  215 (303)
Q Consensus       148 --------~~~~l~----~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g  215 (303)
                              ....+.    ..+...  .+.++|+|+ |......  |.   ..+|.+|||++|++++.+|+.+|..     
T Consensus        82 ~~~~l~~~~~p~v~~~~~~~~~~~--~~~~vi~~~-~~l~~~~--~~---~~~d~vi~l~~~~e~~~~Rl~~R~~-----  148 (218)
T 1vht_A           82 EKNWLNALLHPLIQQETQHQIQQA--TSPYVLWVV-PLLVENS--LY---KKANRVLVVDVSPETQLKRTMQRDD-----  148 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC--CSSEEEEEC-TTTTTTT--GG---GGCSEEEEEECCHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHhHCHHHHHHHHHHHHhc--CCCEEEEEe-eeeeccC--cc---ccCCEEEEEECCHHHHHHHHHHcCC-----
Confidence                    111111    111111  133455554 3322111  11   2478999999999999999987631     


Q ss_pred             ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042          216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~  292 (303)
                                              ...+.+.+++........ ....   .-++||++.+++++.++|.+.+..++.
T Consensus       149 ------------------------~~~~~~~~~~~~~~~~~~-~~~~---ad~vId~~~~~~~~~~~I~~~l~~~~~  197 (218)
T 1vht_A          149 ------------------------VTREHVEQILAAQATREA-RLAV---ADDVIDNNGAPDAIASDVARLHAHYLQ  197 (218)
T ss_dssp             ------------------------CCHHHHHHHHHHSCCHHH-HHHH---CSEEEECSSCTTSHHHHHHHHHHHHHH
T ss_pred             ------------------------CCHHHHHHHHHhcCChHH-HHHh---CCEEEECCCCHHHHHHHHHHHHHHHHH
Confidence                                    113334444443211111 1111   226789988999999999999988776

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.66  E-value=9e-16  Score=127.39  Aligned_cols=161  Identities=20%  Similarity=0.219  Sum_probs=92.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHH-cCCCcChHHHHHHHHHHHcCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHME-KGQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      ++|+|+|+|||||||+|+.|++++|+.+++.|++++...  +..    +.+++. .|.....+.....+...+..    .
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~--g~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~----~   72 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT--GRS----IADIFATDGEQEFRRIEEDVVRAALAD----H   72 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--SSC----HHHHHHHHCHHHHHHHHHHHHHHHHHH----C
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc--CCC----HHHHHHHhChHHHHHHHHHHHHHHHhc----C
Confidence            479999999999999999999999999999999987653  211    222222 22212222222223322221    2


Q ss_pred             CcEEEcCC--CCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCc
Q 022042          164 NGWLLDGY--PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDT  241 (303)
Q Consensus       164 ~~~Vldg~--p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~  241 (303)
                      ..++.+|.  .........+.     .+.+|||++|.+++.+|+.+|...+.                     .. ..+.
T Consensus        73 ~~vi~~g~~~v~~~~~~~~l~-----~~~vV~L~~~~e~~~~Rl~~r~~r~~---------------------~~-~~~~  125 (184)
T 2iyv_A           73 DGVLSLGGGAVTSPGVRAALA-----GHTVVYLEISAAEGVRRTGGNTVRPL---------------------LA-GPDR  125 (184)
T ss_dssp             CSEEECCTTGGGSHHHHHHHT-----TSCEEEEECCHHHHHHHTTCCCCCSS---------------------TT-SCCH
T ss_pred             CeEEecCCcEEcCHHHHHHHc-----CCeEEEEeCCHHHHHHHHhCCCCCCC---------------------cc-CCCH
Confidence            22333342  11211222221     56899999999999999988742110                     00 0111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcceEEEcCC-CCHHHHHHHHHHHHH
Q 022042          242 EEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVALT  288 (303)
Q Consensus       242 ~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~-~s~eev~~~I~~~l~  288 (303)
                      .    .++..+.....+.+..  ...++||++ .++++++++|.+.+.
T Consensus       126 ~----~~i~~~~~~r~~~~~~--~~~~~Idt~~~s~ee~~~~I~~~l~  167 (184)
T 2iyv_A          126 A----EKYRALMAKRAPLYRR--VATMRVDTNRRNPGAVVRHILSRLQ  167 (184)
T ss_dssp             H----HHHHHHHHHHHHHHHH--HCSEEEECSSSCHHHHHHHHHTTSC
T ss_pred             H----HHHHHHHHHHHHHHhc--cCCEEEECCCCCHHHHHHHHHHHHh
Confidence            2    2233333332332211  134678988 799999999887663

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.66  E-value=9.8e-16  Score=125.12  Aligned_cols=110  Identities=17%  Similarity=0.283  Sum_probs=71.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      |+|+|+|++||||||+++.|++++|+.+++.|++.+...      +..+.+++.. +....... ...+...+..    .
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~-~~~~l~~l~~----~   69 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE------GLSIPQIFEKKGEAYFRKL-EFEVLKDLSE----K   69 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHSCHHHHHHH-HHHHHHHHTT----S
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc------CCCHHHHHHHhChHHHHHH-HHHHHHHHhc----c
Confidence            479999999999999999999999999999999987653      2233333332 21111111 1112223331    3


Q ss_pred             CcEEEc-C--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          164 NGWLLD-G--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       164 ~~~Vld-g--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      ..+|++ |  .+........+.    .++++|||++|++++.+|+.+|.
T Consensus        70 ~~~Vi~~g~~~~~~~~~~~~l~----~~~~~i~l~~~~e~~~~R~~~r~  114 (168)
T 2pt5_A           70 ENVVISTGGGLGANEEALNFMK----SRGTTVFIDIPFEVFLERCKDSK  114 (168)
T ss_dssp             SSEEEECCHHHHTCHHHHHHHH----TTSEEEEEECCHHHHHHHCBCTT
T ss_pred             CCeEEECCCCEeCCHHHHHHHH----cCCEEEEEECCHHHHHHHHhCCC
Confidence            456665 4  122333333343    26899999999999999998874

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.66  E-value=7.6e-16  Score=136.92  Aligned_cols=172  Identities=18%  Similarity=0.198  Sum_probs=103.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCC-----CcChH----------
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-----LVPDE----------  146 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~-----~~~~~----------  146 (303)
                      .+|++|+|+|++||||||+|+.|+ .+|+.+|++|++.++....+......+.+.+....     .+...          
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~  151 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNK  151 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCH
Confidence            457899999999999999999999 68999999999988765554443333333221110     01100          


Q ss_pred             --------HH----HHHHHHHHcCCC-CCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCC
Q 022042          147 --------IV----VTMVKERLSQPD-SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPV  213 (303)
Q Consensus       147 --------~~----~~~l~~~l~~~~-~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~  213 (303)
                              ..    ...+.+.+.... .....+|+||......   .|.   ..+|.+|||++|++++++|+.+|.    
T Consensus       152 ~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~---~~~d~vI~l~a~~ev~~~Rl~~R~----  221 (281)
T 2f6r_A          152 KQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQ---SMVHEVWTVVIPETEAVRRIVERD----  221 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGG---GGCSEEEEEECCHHHHHHHHHHHH----
T ss_pred             HHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chH---HhCCEEEEEcCCHHHHHHHHHHcC----
Confidence                    00    011112221110 1135689998521110   011   237899999999999999998873    


Q ss_pred             CCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042          214 TGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQ  293 (303)
Q Consensus       214 ~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~  293 (303)
                       |                        ...+.+.+|+..+....    .++....++||++.+++++.++|.+.+.+++..
T Consensus       222 -g------------------------~s~e~~~~ri~~q~~~~----~~~~~AD~vIdn~~s~eel~~~I~~~l~~l~~~  272 (281)
T 2f6r_A          222 -G------------------------LSEAAAQSRLQSQMSGQ----QLVEQSNVVLSTLWESHVTQSQVEKAWNLLQKR  272 (281)
T ss_dssp             -C------------------------CCHHHHHHHHHTSCCHH----HHHHTCSEEEECSSCHHHHHHHHHHHHHHHHHH
T ss_pred             -C------------------------CCHHHHHHHHHHcCChH----hhHhhCCEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence             1                        11333344443331111    111122367899999999999999999887654

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.65  E-value=2.6e-15  Score=124.99  Aligned_cols=111  Identities=18%  Similarity=0.403  Sum_probs=72.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH-hCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCc---ChHHHHHHHHHHHc
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK-YGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV---PDEIVVTMVKERLS  157 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~-lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~---~~~~~~~~l~~~l~  157 (303)
                      +++++|+|+|++||||||+++.|+++ +|+.++++|+++++. .....++.    .+... .+   .++.....+...+.
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~-~~~~~~~~----~~~~~-~~~r~~~~~~~~~l~~~~~   81 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-HFYTEYDT----ELDTH-IIEEKDEDRLLDFMEPIMV   81 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-TCSCC----------CC-CCCHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh-hhhhhHHH----Hhhhc-ccCCCCHHHHHHHHHHHHh
Confidence            35678999999999999999999999 799999999998873 11111111    11111 12   22333344444332


Q ss_pred             CCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          158 QPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       158 ~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      .    .+++|+|......     +...  .++.+|||++|.+++.+|+.+|.
T Consensus        82 ~----~g~~vi~~~~~~~-----~~~~--~~~~vi~l~~~~e~~~~Rl~~R~  122 (184)
T 1y63_A           82 S----RGNHVVDYHSSEL-----FPER--WFHMVVVLHTSTEVLFERLTKRQ  122 (184)
T ss_dssp             S----SSEEEEECSCCTT-----SCGG--GCSEEEEEECCHHHHHHHHHHTT
T ss_pred             c----cCCEEEeCchHhh-----hhhc--cCCEEEEEECCHHHHHHHHHhCC
Confidence            2    3578888643211     1111  26799999999999999999884

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=99.64  E-value=9.4e-16  Score=130.88  Aligned_cols=175  Identities=18%  Similarity=0.200  Sum_probs=108.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCC-CcChHHHH-----------H
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-LVPDEIVV-----------T  150 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~-~~~~~~~~-----------~  150 (303)
                      ++++|+|.|++||||||+++.|+++++....-    +++ ...+++.|+.+++++.... ...+....           .
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~----~~e-p~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~   78 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKL----LKF-PERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD   78 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEE----EES-SCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccceE----EEe-cCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999863211    111 1236778888888887643 22222111           1


Q ss_pred             HHHHHHcCCCCCCCcEEEcCCC--------------CCHHHHHHHHHhCCCCcEEEEE-EcCHHHHHHHHhcCCCCCCCC
Q 022042          151 MVKERLSQPDSQENGWLLDGYP--------------RSLSQATALKKYGFQPDLFILL-EVPEDTLVERVVGRRLDPVTG  215 (303)
Q Consensus       151 ~l~~~l~~~~~~~~~~Vldg~p--------------~~~~~~~~l~~~~~~pd~vI~L-~~~~e~~~~Rl~~R~~~~~~g  215 (303)
                      .+...+.    .+..+|.|.|.              ....+...+......||++||| |+|++++.+|+..+.      
T Consensus        79 ~I~paL~----~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~------  148 (216)
T 3tmk_A           79 KIKKDLL----EGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD------  148 (216)
T ss_dssp             HHHHHHH----TTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC------
T ss_pred             HHHHHHH----cCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc------
Confidence            1222222    25667778642              1233333233345689999999 999999988864331      


Q ss_pred             ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHH-HHHHHHHHHHHhhcceEEEc-CCCCHHHHHHHHHHHHHHHHHh
Q 022042          216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKT-HHHNVEAVLSLYEDVTVEVN-GSVNKEDVFAQIDVALTNLLEQ  293 (303)
Q Consensus       216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~-~~~~~~~~~~~~~~~~~~Id-~~~s~eev~~~I~~~l~~~l~~  293 (303)
                                      +|.    + ..+ ..+++.. |.+.......++...+++|| +++++++|.++|.+.|.+.+.+
T Consensus       149 ----------------dr~----E-~~~-f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~~  206 (216)
T 3tmk_A          149 ----------------ERY----E-TVK-FQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLST  206 (216)
T ss_dssp             ----------------CTT----C-CHH-HHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             ----------------ccc----c-HHH-HHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence                            111    1 122 2233332 32222221222456789999 9999999999999999998875


Q ss_pred             h
Q 022042          294 R  294 (303)
Q Consensus       294 ~  294 (303)
                      .
T Consensus       207 ~  207 (216)
T 3tmk_A          207 H  207 (216)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.64  E-value=1.6e-15  Score=124.11  Aligned_cols=157  Identities=13%  Similarity=0.146  Sum_probs=89.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDS  161 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~  161 (303)
                      .|.+|+|+|++||||||+++.|++++|+++++.|+++++..      +..+.+++.. |.....+.....+...+.    
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~------g~~~~~~~~~~g~~~~~~~~~~~l~~~~~----   75 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV------GLSVREIFEELGEDNFRMFEKNLIDELKT----   75 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHTCHHHHHHHHHHHHHHHHT----
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh------CCCHHHHHHHhCHHHHHHHHHHHHHHHHh----
Confidence            46799999999999999999999999999999999987753      2223333332 321111222222333221    


Q ss_pred             CCCcE-EEc-C--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccC
Q 022042          162 QENGW-LLD-G--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKR  237 (303)
Q Consensus       162 ~~~~~-Vld-g--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r  237 (303)
                       ...+ |+. |  ++.. ..   +    ..++.+|||++|++++.+|+.+|...   ++.                ..  
T Consensus        76 -~~~~~Vi~~g~g~~~~-~~---l----~~~~~vi~l~~~~e~~~~Rl~~r~~~---~r~----------------~~--  125 (168)
T 1zuh_A           76 -LKTPHVISTGGGIVMH-EN---L----KGLGTTFYLKMDFETLIKRLNQKERE---KRP----------------LL--  125 (168)
T ss_dssp             -CSSCCEEECCGGGGGC-GG---G----TTSEEEEEEECCHHHHHHHHCC---------------------------C--
T ss_pred             -cCCCEEEECCCCEech-hH---H----hcCCEEEEEECCHHHHHHHHhccCCC---CCC----------------Cc--
Confidence             1233 443 3  3322 11   2    23789999999999999999887310   000                00  


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHH
Q 022042          238 FDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       238 ~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l  287 (303)
                       .+ .+.+...+..    ..+.+..+  ..++||++.++++++++|.+.|
T Consensus       126 -~~-~~~~~~~~~~----r~~~~~~~--a~~~Id~~~~~e~~~~~I~~~l  167 (168)
T 1zuh_A          126 -NN-LTQAKELFEK----RQALYEKN--ASFIIDARGGLNNSLKQVLQFI  167 (168)
T ss_dssp             -CT-THHHHHHHHH----HHHHHHHT--CSEEEEGGGCHHHHHHHHHHC-
T ss_pred             -cC-HHHHHHHHHH----HHHHHHHH--CCEEEECCCCHHHHHHHHHHHh
Confidence             01 2223332222    22222222  3466788889999999987654

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.64  E-value=4.8e-15  Score=122.07  Aligned_cols=162  Identities=17%  Similarity=0.137  Sum_probs=89.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH-HhCCceeehHHHHHHHHHcCCc-----chHHHHHHHHcCCCcChHHHHHHHHHHHc
Q 022042           84 PLKIMISGAPASGKGTQCELIKE-KYGLVHIAAGDLLRAEIAAGSE-----NGKRAKEHMEKGQLVPDEIVVTMVKERLS  157 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~-~lg~~~i~~d~l~~~~~~~~~~-----~~~~i~~~~~~g~~~~~~~~~~~l~~~l~  157 (303)
                      |++|+|+|+|||||||+|+.|++ .+|+.+++.|.+... +...+.     +...-...       ..+.....+...+.
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~   73 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQS-IMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILY   73 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHH-HTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHH-hhCCCccchhhhchhhhhH-------HHHHHHHHHHHHHh
Confidence            46899999999999999999999 689999998665433 332111     11111000       12223344455553


Q ss_pred             CCCCCCCcEEEcCCCCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhh
Q 022042          158 QPDSQENGWLLDGYPRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARL  234 (303)
Q Consensus       158 ~~~~~~~~~Vldg~p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL  234 (303)
                      .. ..+.++|+|+++....+...|.+.   ...+..+|||++|.+++.+|+.+|..+                       
T Consensus        74 ~~-~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~-----------------------  129 (181)
T 1ly1_A           74 GG-DSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK-----------------------  129 (181)
T ss_dssp             SC-SSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG-----------------------
T ss_pred             hc-cCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccC-----------------------
Confidence            21 236789999988876665555431   123557999999999999999988510                       


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          235 TKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       235 ~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                          ....+.+.++++.|....     .++  .++||++.+ +++...|...+..
T Consensus       130 ----~~~~~~i~~~~~~~~~~~-----~~~--~~~id~~~~-~~v~~~i~~~l~~  172 (181)
T 1ly1_A          130 ----AVPIDVLRSMYKSMREYL-----GLP--VYNGTPGKP-KAVIFDVDGTLAK  172 (181)
T ss_dssp             ----CCCHHHHHHHHHHHHHHH-----TCC--CC---------------------
T ss_pred             ----CCCHHHHHHHHHHhhccC-----CCC--ccccCCCCC-ceeeehhhhhhhc
Confidence                234667777777765541     122  233777664 7777777776654

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.63  E-value=2.8e-15  Score=128.43  Aligned_cols=178  Identities=17%  Similarity=0.167  Sum_probs=98.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHH----cCCcch--HHHHHHHHc-----------------C
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA----AGSENG--KRAKEHMEK-----------------G  140 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~----~~~~~~--~~i~~~~~~-----------------g  140 (303)
                      +++|+|+|++||||||+++.|++.||+++++.|++++....    .+.++.  ..+.++...                 +
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   84 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG   84 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence            46899999999999999999999999999999999987542    333332  222222111                 1


Q ss_pred             CCcChH-----------------HHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHH
Q 022042          141 QLVPDE-----------------IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVE  203 (303)
Q Consensus       141 ~~~~~~-----------------~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~  203 (303)
                      ..+.+.                 .+...+........ .++++|+||+....       .....+|++|||+++.+++.+
T Consensus        85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~vldg~~~~~-------~~~~~~d~~i~l~~~~e~~~~  156 (227)
T 1cke_A           85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFR-ELPGLIADGRDMGT-------VVFPDAPVKIFLDASSEERAH  156 (227)
T ss_dssp             EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTTCEEEEESSCCC-------CCCTTCSEEEEEECCHHHHHH
T ss_pred             eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHH-hCCCEEEECCCccc-------eEecCCCEEEEEeCCHHHHHH
Confidence            111111                 12222222222222 25789999963211       111247899999999999999


Q ss_pred             HHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHH-HHHHHHHHHHHHhhcceEEEcCC-CCHHHHHH
Q 022042          204 RVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLK-THHHNVEAVLSLYEDVTVEVNGS-VNKEDVFA  281 (303)
Q Consensus       204 Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~-~~~~~~~~~~~~~~~~~~~Id~~-~s~eev~~  281 (303)
                      |+..+..  ..|.       .+..           ++..+.+.+|.. .+.....++...+  ..++||++ .+++++++
T Consensus       157 R~~~~l~--~rg~-------~~~~-----------~~~~~~i~~R~~~~~~~~~~pl~~~~--~~~~Id~~~~~~~ev~~  214 (227)
T 1cke_A          157 RRMLQLQ--VKGF-------SVNF-----------ERLLAEIKERDDRDRNRAVAPLVPAA--DALVLDSTTLSIEQVIE  214 (227)
T ss_dssp             HHHHHHH--HHTC-------CCCH-----------HHHHHHHC-------------CCCCT--TCEEEETTTSCHHHHHH
T ss_pred             HHHHHHH--hCCc-------cCCH-----------HHHHHHHHHHHHhhhhhcccCccCCC--CEEEEeCCCCCHHHHHH
Confidence            9543200  0000       0000           011122222222 1222223332222  23678988 89999999


Q ss_pred             HHHHHHHHHH
Q 022042          282 QIDVALTNLL  291 (303)
Q Consensus       282 ~I~~~l~~~l  291 (303)
                      +|.+.+.+.+
T Consensus       215 ~I~~~l~~~~  224 (227)
T 1cke_A          215 KALQYARQKL  224 (227)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999887654

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.61  E-value=2.2e-15  Score=124.15  Aligned_cols=158  Identities=18%  Similarity=0.157  Sum_probs=91.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHH-cCCCcChHHHHHHHHHHHcCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHME-KGQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      |++|+|+|+|||||||+++.|++++|+.+++.|++++...      +..+.+.+. .+.....+....++. .+..    
T Consensus         4 m~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~------g~~~~~~~~~~g~~~~~~~~~~~~~-~l~~----   72 (175)
T 1via_A            4 AKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF------NQKVSEIFEQKRENFFREQEQKMAD-FFSS----   72 (175)
T ss_dssp             -CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH------TSCHHHHHHHHCHHHHHHHHHHHHH-HHTT----
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHc------CCCHHHHHHHcCHHHHHHHHHHHHH-HHHc----
Confidence            3579999999999999999999999999999999887642      112222222 121111111122222 2322    


Q ss_pred             CCcEEEc-CCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCc
Q 022042          163 ENGWLLD-GYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDT  241 (303)
Q Consensus       163 ~~~~Vld-g~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~  241 (303)
                      ...+|++ |.+.... .. +.    ..+.+|||++|++++.+|+.+|...                        .|+...
T Consensus        73 ~~~~vi~~g~~~~~~-~~-l~----~~~~~i~l~~~~e~~~~R~~~r~~~------------------------~r~~~~  122 (175)
T 1via_A           73 CEKACIATGGGFVNV-SN-LE----KAGFCIYLKADFEYLKKRLDKDEIS------------------------KRPLFY  122 (175)
T ss_dssp             CCSEEEECCTTGGGS-TT-GG----GGCEEEEEECCHHHHTTCCCGGGTT------------------------TSCTTC
T ss_pred             cCCEEEECCCCEehh-hH-Hh----cCCEEEEEeCCHHHHHHHHhcccCC------------------------CCCCcc
Confidence            2445555 5432211 11 22    2468999999999999998766210                        011111


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHhhcceEEEcCC-CCHHHHHHHHHHHHH
Q 022042          242 -EEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVALT  288 (303)
Q Consensus       242 -~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~-~s~eev~~~I~~~l~  288 (303)
                       .+.+    ........+++..  ...++||++ .++++++++|.+.+.
T Consensus       123 ~~~~i----~~~~~~r~~~y~~--~~~~~Idt~~~~~eev~~~I~~~l~  165 (175)
T 1via_A          123 DEIKA----KKLYNERLSKYEQ--KANFILNIENKNIDELLSEIKKVIK  165 (175)
T ss_dssp             CHHHH----HHHHHHHHHHHHH--HCSEEEECTTCCHHHHHHHHHHHHC
T ss_pred             cHHHH----HHHHHHHHHHHHh--cCCEEEECCCCCHHHHHHHHHHHHH
Confidence             2222    2222222222211  145788988 799999999988774

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.61  E-value=1.6e-14  Score=126.09  Aligned_cols=178  Identities=17%  Similarity=0.168  Sum_probs=107.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      ..+|+|+|++||||||+++.|++.+|+.+++.|.+++... .    +..+.+++.. |.....+.....+.......   
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~-~----g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~---  119 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM-K----GTSVAEIFEHFGESVFREKETEALKKLSLMY---  119 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS-T----TSCHHHHHHHHCHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh-c----CccHHHHHHHhCcHHHHHHHHHHHHHHHhhc---
Confidence            5689999999999999999999999999999999987753 1    2233333333 32222222222233222210   


Q ss_pred             CCcEEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhcc--CC
Q 022042          163 ENGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTK--RF  238 (303)
Q Consensus       163 ~~~~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~--r~  238 (303)
                      ...+|.+|  .+........+.     .+++|||++|.+++.+|+.++...   .                ..+..  +.
T Consensus       120 ~~~Via~GgG~v~~~~~~~~l~-----~~~vV~L~a~~e~l~~Rl~~~~~~---~----------------Rpl~~~~~~  175 (250)
T 3nwj_A          120 HQVVVSTGGGAVIRPINWKYMH-----KGISIWLDVPLEALAHRIAAVGTG---S----------------RPLLHDDES  175 (250)
T ss_dssp             SSEEEECCGGGGGSHHHHHHHT-----TSEEEEEECCHHHHHHHHHC---------------------------------
T ss_pred             CCcEEecCCCeecCHHHHHHHh-----CCcEEEEECCHHHHHHHHhhcCCC---C----------------CCcccCCCc
Confidence            24455554  444444444443     368999999999999999864210   0                00111  11


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhhcceEEE----------cC-CCCHHHHHHHHHHHHHHHHHhh
Q 022042          239 DDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEV----------NG-SVNKEDVFAQIDVALTNLLEQR  294 (303)
Q Consensus       239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~I----------d~-~~s~eev~~~I~~~l~~~l~~~  294 (303)
                      ++..+....++........+++.. .+.++.+          |. ..++++++++|.+.+..++..+
T Consensus       176 ~d~~~~~~~~l~~l~~eR~~lY~~-ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~~  241 (250)
T 3nwj_A          176 GDTYTAALNRLSTIWDARGEAYTK-ASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKE  241 (250)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHTT-SSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHTC
T ss_pred             ccchhhHHHHHHHHHHHHHHHHhh-CCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            222334455666666666665543 2233322          43 5799999999999999988654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.60  E-value=7.5e-14  Score=114.75  Aligned_cols=159  Identities=14%  Similarity=0.087  Sum_probs=93.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH----HHcCCcchH-HHHHHHHcCCCcChHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE----IAAGSENGK-RAKEHMEKGQLVPDEIVVTMVKERL  156 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~----~~~~~~~~~-~i~~~~~~g~~~~~~~~~~~l~~~l  156 (303)
                      +.+.+|+|+|++||||||+++.|++.+|..+++.|++....    ...+..+.. ....++        ..+...+...+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~   77 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWL--------QALNDAAFAMQ   77 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHH--------HHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCccccccHH--------HHHHHHHHHHH
Confidence            45679999999999999999999999999999998764221    011111110 000000        01111122222


Q ss_pred             cCCCCCCCcEEEcC-CCCCHHHHHHHHHhCCCCc-EEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhh
Q 022042          157 SQPDSQENGWLLDG-YPRSLSQATALKKYGFQPD-LFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARL  234 (303)
Q Consensus       157 ~~~~~~~~~~Vldg-~p~~~~~~~~l~~~~~~pd-~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL  234 (303)
                      .    .+..+|+|. +. .......+.+.+  ++ .+|||++|++++.+|+.+|..+.                      
T Consensus        78 ~----~~~~~vi~~~~~-~~~~~~~l~~~~--~~~~vv~l~~~~e~~~~R~~~R~~~~----------------------  128 (175)
T 1knq_A           78 R----TNKVSLIVCSAL-KKHYRDLLREGN--PNLSFIYLKGDFDVIESRLKARKGHF----------------------  128 (175)
T ss_dssp             H----HCSEEEEECCCC-SHHHHHHHHTTC--TTEEEEEEECCHHHHHHHHHTSTTCC----------------------
T ss_pred             h----cCCcEEEEeCch-HHHHHHHHHhcC--CCEEEEEEECCHHHHHHHHHhccCCC----------------------
Confidence            1    145688884 43 333444454432  45 79999999999999999885211                      


Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHHHHHHHhhc-ceEEEcCCCCHHHHHHHHHHHHH
Q 022042          235 TKRFDDTEEKVKLRLKTHHHNVEAVLSLYED-VTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       235 ~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~-~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                           ...+.+...+..+    ++.  +|.. ..++||++.+++++.++|.+.+.
T Consensus       129 -----~~~~~~~~~~~~~----~~~--~~~~~~~~~Id~~~~~~~~~~~i~~~l~  172 (175)
T 1knq_A          129 -----FKTQMLVTQFETL----QEP--GADETDVLVVDIDQPLEGVVASTIEVIK  172 (175)
T ss_dssp             -----CCHHHHHHHHHHC----CCC--CTTCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             -----CchHHHHHHHHhh----hCc--ccCCCCeEEEeCCCCHHHHHHHHHHHHh
Confidence                 0122222111111    110  1322 46789999999999999988764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.60  E-value=3.7e-15  Score=125.68  Aligned_cols=166  Identities=18%  Similarity=0.234  Sum_probs=95.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCC-----CcC-----------hHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-----LVP-----------DEI  147 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~-----~~~-----------~~~  147 (303)
                      |++|+|+|++||||||+++.|++ +|+.+++.|+++++....+......+.+.+....     ...           .+.
T Consensus         1 m~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~   79 (204)
T 2if2_A            1 MKRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEK   79 (204)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHH
T ss_pred             CeEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHH
Confidence            36899999999999999999999 9999999999987643322222222222221110     010           110


Q ss_pred             ---HHHHHHHHHcCC------CCCC-CcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCce
Q 022042          148 ---VVTMVKERLSQP------DSQE-NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKI  217 (303)
Q Consensus       148 ---~~~~l~~~l~~~------~~~~-~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~  217 (303)
                         +..+....+...      ...+ ..+|+|+.-.....   +.   ..+|.+|||++|++++.+|+.+|..       
T Consensus        80 ~~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~---~~---~~~~~~i~l~~~~e~~~~Rl~~R~~-------  146 (204)
T 2if2_A           80 LRKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKG---TY---KNYDKLIVVYAPYEVCKERAIKRGM-------  146 (204)
T ss_dssp             HHHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTT---CG---GGSSEEEEECCCHHHHHHHHHHTCC-------
T ss_pred             HHHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCC---ch---hhCCEEEEEECCHHHHHHHHHHcCC-------
Confidence               011111111110      0112 57888873111000   11   1378999999999999999988731       


Q ss_pred             ecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                                             ..+.+.+++..+..    ...++....++||++.+++++.++|.+.+.++
T Consensus       147 -----------------------~~~~~~~~~~~~~~----~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~  192 (204)
T 2if2_A          147 -----------------------SEEDFERRWKKQMP----IEEKVKYADYVIDNSGSIEETYKQVKKVYEEL  192 (204)
T ss_dssp             -----------------------CHHHHHHHHTTSCC----HHHHGGGCSEECCCSSCHHHHHHHHHHHHHTT
T ss_pred             -----------------------CHHHHHHHHHhCCC----hhHHHhcCCEEEECCCCHHHHHHHHHHHHHHH
Confidence                                   01223333322211    11122222367899999999999999888654

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.60  E-value=1.3e-14  Score=120.07  Aligned_cols=109  Identities=22%  Similarity=0.295  Sum_probs=70.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      ++.+|+|+|++||||||+++.|++++|+.+++.|+++++.. .....+...     .......+.+...+...+..    
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----   79 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQ-LYDGYDEEY-----DCPILDEDRVVDELDNQMRE----   79 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHT-CEEEEETTT-----TEEEECHHHHHHHHHHHHHH----
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcc-hhhhhhhhh-----cCccCChHHHHHHHHHHHhc----
Confidence            45689999999999999999999999999999999987651 000000000     00011223333344433332    


Q ss_pred             CCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       163 ~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                       +++|+|......     +..  ..++.+|||+++++++.+|+.+|+
T Consensus        80 -g~~vv~~~~~~~-----~~~--~~~~~vi~L~~~~e~l~~R~~~r~  118 (180)
T 3iij_A           80 -GGVIVDYHGCDF-----FPE--RWFHIVFVLRTDTNVLYERLETRG  118 (180)
T ss_dssp             -CCEEEECSCCTT-----SCG--GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             -CCEEEEechhhh-----cch--hcCCEEEEEECCHHHHHHHHHHcC
Confidence             467777543221     111  126899999999999999999885

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.59  E-value=9.3e-15  Score=123.17  Aligned_cols=161  Identities=16%  Similarity=0.170  Sum_probs=94.6

Q ss_pred             cccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChH-------HHHHH
Q 022042           79 SATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE-------IVVTM  151 (303)
Q Consensus        79 ~~~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~~  151 (303)
                      +....+.+|+|+|++||||||+++.|+..+|..+++.+++......          .....+....+.       .+...
T Consensus        24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~~~~~   93 (200)
T 4eun_A           24 MTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENI----------ATMQRGIPLTDEDRWPWLRSLAEW   93 (200)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHH----------HHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             hcCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHH----------HHHhcCCCCCCcccccHHHHHHHH
Confidence            3445667999999999999999999999999999998876422100          011112111111       11112


Q ss_pred             HHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH
Q 022042          152 VKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA  231 (303)
Q Consensus       152 l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~  231 (303)
                      +...+.    .+..+|+|.........+.+.+.. .+..+|||++|.+++.+|+.+|..++.                  
T Consensus        94 ~~~~~~----~g~~viid~~~~~~~~~~~l~~~~-~~~~vv~l~~~~e~l~~Rl~~R~~~~~------------------  150 (200)
T 4eun_A           94 MDARAD----AGVSTIITCSALKRTYRDVLREGP-PSVDFLHLDGPAEVIKGRMSKREGHFM------------------  150 (200)
T ss_dssp             HHHHHH----TTCCEEEEECCCCHHHHHHHTTSS-SCCEEEEEECCHHHHHHHHTTCSCCSS------------------
T ss_pred             HHHHHh----cCCCEEEEchhhhHHHHHHHHHhC-CceEEEEEeCCHHHHHHHHHhcccCCC------------------
Confidence            222222    245678876434444444444332 255899999999999999998853211                  


Q ss_pred             hhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhc-ceEEEcCCCCHHHHHHHHHHHHH
Q 022042          232 ARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED-VTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       232 ~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~-~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                               ..+.+...+..       ....|.. ..++||++.+++++.++|.+.+.
T Consensus       151 ---------~~~~l~~~~~~-------~~~~~~~~~~~~Id~~~~~~e~~~~I~~~l~  192 (200)
T 4eun_A          151 ---------PASLLQSQLAT-------LEALEPDESGIVLDLRQPPEQLIERALTWLD  192 (200)
T ss_dssp             ---------CGGGHHHHHHH-------CCCCCTTSCEEEEETTSCHHHHHHHHHHHHC
T ss_pred             ---------CHHHHHHHHHH-------hCCCCCCCCeEEEECCCCHHHHHHHHHHHHH
Confidence                     01111111111       1112222 46789999999999999988775

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.59  E-value=2.8e-14  Score=119.82  Aligned_cols=168  Identities=15%  Similarity=0.113  Sum_probs=91.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHH---HHHHcCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMV---KERLSQPDS  161 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l---~~~l~~~~~  161 (303)
                      |+|+|+|++||||||+++.|+++++..++....       .+...   +..+.......+.......+   ...+.....
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   70 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPV-------EENPY---FEQYYKDLKKTVFKMQIYMLTARSKQLKQAKN   70 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCG-------GGCTT---HHHHTTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEcccc-------cccHH---HHHHHhCccccchhHHHHHHHHHHHHHHHhhc
Confidence            479999999999999999999999987664210       00000   11111000000000000111   122322222


Q ss_pred             CCCcEEEcCCCCCHHHH---------------H---H-HHHh----------CCCCcEEEEEEcCHHHHHHHHhcCCCCC
Q 022042          162 QENGWLLDGYPRSLSQA---------------T---A-LKKY----------GFQPDLFILLEVPEDTLVERVVGRRLDP  212 (303)
Q Consensus       162 ~~~~~Vldg~p~~~~~~---------------~---~-l~~~----------~~~pd~vI~L~~~~e~~~~Rl~~R~~~~  212 (303)
                       .+.+|+|+++....-.               .   . +...          ...+|++|||++|++++++|+.+|.   
T Consensus        71 -~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~---  146 (205)
T 2jaq_A           71 -LENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRG---  146 (205)
T ss_dssp             ---CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHT---
T ss_pred             -cCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcC---
Confidence             2348999876531110               0   0 1111          2468999999999999999998763   


Q ss_pred             CCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHh--hcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          213 VTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY--EDVTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       213 ~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~--~~~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                         +.                +...  ... ...+++..++..   +...|  ....++||++.++++++++|.+.+.++
T Consensus       147 ---r~----------------~~~~--~~~-~~~~~l~~~~~~---~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~  201 (205)
T 2jaq_A          147 ---RS----------------EELL--IGE-EYWETLNKNYEE---FYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSI  201 (205)
T ss_dssp             ---CH----------------HHHH--SCH-HHHHHHHHHHHH---HHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred             ---Ch----------------hhhc--CcH-HHHHHHHHHHHH---HHHHccccCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence               10                1000  001 223344443332   34455  346788999999999999999988764


Q ss_pred             H
Q 022042          291 L  291 (303)
Q Consensus       291 l  291 (303)
                      .
T Consensus       202 ~  202 (205)
T 2jaq_A          202 K  202 (205)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.57  E-value=7.1e-15  Score=123.53  Aligned_cols=169  Identities=18%  Similarity=0.180  Sum_probs=95.2

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc---CCCcChHHHH--------
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK---GQLVPDEIVV--------  149 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~---g~~~~~~~~~--------  149 (303)
                      ..++++|+|+|++||||||+++.|++. |+.+++.|++++... .+.+  ..+.+.+..   ...+....+.        
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~   80 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVFSDPE   80 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHTTSHH
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCCHH
Confidence            346789999999999999999999998 999999999987765 2211  122222110   0111111110        


Q ss_pred             ----------HHH-HHHHcCC-CCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCce
Q 022042          150 ----------TMV-KERLSQP-DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKI  217 (303)
Q Consensus       150 ----------~~l-~~~l~~~-~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~  217 (303)
                                ..+ ...+... ...+..+|+|+ |.....  .+.   ..+|.+|||+++++++.+|+.+|..     . 
T Consensus        81 ~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~~--~~~---~~~d~~i~l~~~~e~~~~R~~~R~~-----~-  148 (203)
T 1uf9_A           81 RLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFEK--GWE---GRLHGTLLVAAPLEERVRRVMARSG-----L-  148 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTTT--TCG---GGSSEEEEECCCHHHHHHHHHTTTC-----C-
T ss_pred             HHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceecc--Cch---hhCCEEEEEECCHHHHHHHHHHcCC-----C-
Confidence                      111 0111111 11135677786 221110  011   1368999999999999999998731     0 


Q ss_pred             ecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042          218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~  292 (303)
                              +.+++..++..+               .... .....+   -++||++.+++++.++|.+.+..++.
T Consensus       149 --------~~~~~~~~i~~~---------------~~~~-~~~~~a---d~vId~~~~~~~~~~~i~~~~~~~~~  196 (203)
T 1uf9_A          149 --------SREEVLARERAQ---------------MPEE-EKRKRA---TWVLENTGSLEDLERALKAVLAELTG  196 (203)
T ss_dssp             --------TTHHHHHHHTTS---------------CCHH-HHHHHC---SEEECCSSHHHHHHHHHHHHHHSCCC
T ss_pred             --------CHHHHHHHHHHC---------------CChh-HHHHhC---CEEEECCCCHHHHHHHHHHHHHHHHh
Confidence                    011222222221               1110 011111   25789888999999999988876543

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.55  E-value=1.3e-14  Score=127.42  Aligned_cols=111  Identities=16%  Similarity=0.142  Sum_probs=72.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH---hCCcee--ehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHc
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK---YGLVHI--AAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS  157 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~---lg~~~i--~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~  157 (303)
                      +|++|+|+|+|||||||+|+.|++.   +|+.++  +.|.+.... ......+..   .       ........+...+.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l-~~~~~~~e~---~-------~~~~~~~~i~~~l~   71 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESF-PVWKEKYEE---F-------IKKSTYRLIDSALK   71 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTS-SSCCGGGHH---H-------HHHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHH-hhhhHHHHH---H-------HHHHHHHHHHHHhh
Confidence            5789999999999999999999998   688777  776654221 110000000   0       01111223333332


Q ss_pred             CCCCCCCcEEEcCCCCCHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          158 QPDSQENGWLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       158 ~~~~~~~~~Vldg~p~~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                          . ..+|+|+.+........+..   ....++++|||++|++++.+|+.+|.
T Consensus        72 ----~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~  121 (260)
T 3a4m_A           72 ----N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG  121 (260)
T ss_dssp             ----T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT
T ss_pred             ----C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC
Confidence                2 67999986655554444433   34468899999999999999998874

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.54  E-value=8.8e-14  Score=113.95  Aligned_cols=163  Identities=15%  Similarity=0.203  Sum_probs=87.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      +++|+|+|++||||||+++.|++.+|+.+++.|++++...  +...+...+..   |..........++. .+..    .
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~~---g~~~~~~~~~~~l~-~l~~----~   73 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDLE---GEEGFRDREEKVIN-ELTE----K   73 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHHH---HHHHHHHHHHHHHH-HHHT----S
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHHH---hHHHHHHHHHHHHH-HHHh----C
Confidence            4689999999999999999999999999999998877542  22222111111   10000111112222 2222    2


Q ss_pred             CcEEEc---CCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042          164 NGWLLD---GYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD  240 (303)
Q Consensus       164 ~~~Vld---g~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d  240 (303)
                      ..+++.   +.+........+..    .++++||+++++++.+|+.+|...+.                     .. ..+
T Consensus        74 ~~~v~~~~~~~~~~~~~~~~l~~----~~~~i~l~~~~~~l~~R~~~r~~r~~---------------------~~-~~~  127 (173)
T 1kag_A           74 QGIVLATGGGSVKSRETRNRLSA----RGVVVYLETTIEKQLARTQRDKKRPL---------------------LH-VET  127 (173)
T ss_dssp             SSEEEECCTTGGGSHHHHHHHHH----HSEEEECCCCHHHHHSCC------CC---------------------SS-SSC
T ss_pred             CCeEEECCCeEEecHHHHHHHHh----CCEEEEEeCCHHHHHHHHhCCCCCCC---------------------CC-CCC
Confidence            345553   33333333344443    45899999999999999987742110                     00 111


Q ss_pred             c-HHHHHHHHHHHHHHHHHHHHHhhcceEEEcCC-CCHHHHHHHHHHHHH
Q 022042          241 T-EEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVALT  288 (303)
Q Consensus       241 ~-~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~-~s~eev~~~I~~~l~  288 (303)
                      . .+.+.    .+.....+.+...  ..++||++ .++++++++|.+.+.
T Consensus       128 ~~~~~~~----~~~~~r~~~~~~~--a~~~id~~~~~~~~~~~~i~~~l~  171 (173)
T 1kag_A          128 PPREVLE----ALANERNPLYEEI--ADVTIRTDDQSAKVVANQIIHMLE  171 (173)
T ss_dssp             CCHHHHH----HHHHHHHHHHHHH--CSEEC-----CHHHHHHHHHHHHC
T ss_pred             chHHHHH----HHHHHHHHHHHhh--CCEEEECCCCCHHHHHHHHHHHHH
Confidence            1 33322    2223323322222  34678887 799999999988774

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.54  E-value=2e-13  Score=112.83  Aligned_cols=158  Identities=13%  Similarity=0.154  Sum_probs=87.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCcee-ehHHHHHHHHHcCCcchHHHHHHHHcCCCc----Ch--HHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHI-AAGDLLRAEIAAGSENGKRAKEHMEKGQLV----PD--EIVVTMVKER  155 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i-~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~----~~--~~~~~~l~~~  155 (303)
                      +|++|+|+|+|||||||+++.|++++|+.++ +.+.+           +..+.+++..+...    ..  +.+...+...
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~-----------g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~   72 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEM-----------GQALRKLTPGFSGDPQEHPMWIPLMLDALQYA   72 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHH-----------HHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhh-----------HHHHHHhCccccchhhhhHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999888 43211           11222222211100    00  2223344443


Q ss_pred             HcCCCCCCCcEEEcCCCCCHHHH----HHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH
Q 022042          156 LSQPDSQENGWLLDGYPRSLSQA----TALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA  231 (303)
Q Consensus       156 l~~~~~~~~~~Vldg~p~~~~~~----~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~  231 (303)
                      +..   .+..+|+|+........    ..+...+. .-.+|||++|++++.+|+.+|..+                    
T Consensus        73 l~~---~g~~vi~d~~~~~~~~~~~~~~~l~~~~~-~~~~i~l~~~~e~~~~R~~~R~~r--------------------  128 (183)
T 2vli_A           73 SRE---AAGPLIVPVSISDTARHRRLMSGLKDRGL-SVHHFTLIAPLNVVLERLRRDGQP--------------------  128 (183)
T ss_dssp             HHH---CSSCEEEEECCCCHHHHHHHHHHHHHTTC-CCEEEEEECCHHHHHHHHHTC-----------------------
T ss_pred             HHh---CCCcEEEeeeccCHHHHHHHHHHHHhcCC-ceEEEEEeCCHHHHHHHHHhcccc--------------------
Confidence            322   14557778643333222    22333332 235699999999999999988411                    


Q ss_pred             hhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCC-CCHHHHHHHHHHHHHHHH
Q 022042          232 ARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVALTNLL  291 (303)
Q Consensus       232 ~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~-~s~eev~~~I~~~l~~~l  291 (303)
                            . ...+.    +..+...+.++ . |  .+ +||++ .+++++.++|.+.+...+
T Consensus       129 ------~-~~~~~----~~~~~~~~~~~-~-~--~~-~Id~~~~~~~~~~~~I~~~l~~~~  173 (183)
T 2vli_A          129 ------Q-VNVGT----VEDRLNELRGE-Q-F--QT-HIDTAGLGTQQVAEQIAAQVGLTL  173 (183)
T ss_dssp             --------CCHHH----HHHHHHHHTSG-G-G--CS-EEECTTCCHHHHHHHHHHHHTCCC
T ss_pred             ------c-hhHHH----HHHHHHhhccc-c-c--ce-EeeCCCCCHHHHHHHHHHHHHHhc
Confidence                  0 11222    22233333333 2 3  23 78887 899999999998886544

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.53  E-value=3.4e-13  Score=113.60  Aligned_cols=163  Identities=18%  Similarity=0.161  Sum_probs=94.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHH----cCCcc--hHHHHHHHH-----------------cCCC
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA----AGSEN--GKRAKEHME-----------------KGQL  142 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~----~~~~~--~~~i~~~~~-----------------~g~~  142 (303)
                      +|+|+|++||||||+++.|++.+|+++++.|++.+....    .+.+.  ...+.+...                 .|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   83 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED   83 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence            899999999999999999999999999999999887532    22211  112222211                 1111


Q ss_pred             cCh----H-------------HHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHH
Q 022042          143 VPD----E-------------IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV  205 (303)
Q Consensus       143 ~~~----~-------------~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl  205 (303)
                      ++.    .             .+...+...+....   +++|+||....       ......+|++|||++|++++.+|+
T Consensus        84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~vi~g~~~~-------~~~~~~~d~~i~l~a~~e~~~~R~  153 (208)
T 3ake_A           84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP---PPFVAEGRDMG-------TAVFPEAAHKFYLTASPEVRAWRR  153 (208)
T ss_dssp             CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC---SCEEEEESSCC-------CCCCTTCSEEEEEECCHHHHHHHH
T ss_pred             CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc---CCEEEEcccee-------EEEecCCcEEEEEECCHHHHHHHH
Confidence            111    1             11112222221121   57899985322       001124689999999999999999


Q ss_pred             hcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCC-CHHHHHHHHH
Q 022042          206 VGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSV-NKEDVFAQID  284 (303)
Q Consensus       206 ~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~-s~eev~~~I~  284 (303)
                      .+|..                             ...+.+.+++.............+ ...++||++. +++++.++|.
T Consensus       154 ~~r~~-----------------------------~~~~~~~~~~~~R~~~~~~~~~~~-ad~~~Id~~~~~~ee~~~~I~  203 (208)
T 3ake_A          154 ARERP-----------------------------QAYEEVLRDLLRRDERDKAQSAPA-PDALVLDTGGMTLDEVVAWVL  203 (208)
T ss_dssp             HHTSS-----------------------------SCHHHHHHHHHHHHHTC--CCCCC-TTCEEEETTTSCHHHHHHHHH
T ss_pred             Hhhcc-----------------------------cCHHHHHHHHHHHHHHHhhcccCC-CCEEEEECCCCCHHHHHHHHH
Confidence            88731                             112333333332111100000001 1237789885 9999999998


Q ss_pred             HHHH
Q 022042          285 VALT  288 (303)
Q Consensus       285 ~~l~  288 (303)
                      +.++
T Consensus       204 ~~~~  207 (208)
T 3ake_A          204 AHIR  207 (208)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.53  E-value=6.8e-15  Score=124.49  Aligned_cols=171  Identities=17%  Similarity=0.150  Sum_probs=97.1

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHHHHHHHcCCcchHHHHHHHHcC---CCcChHHHHHHHHHH
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKG---QLVPDEIVVTMVKER  155 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g---~~~~~~~~~~~l~~~  155 (303)
                      ....+.+|+|+|++||||||+++.|++.+ ++.+++.|++++....-  ..+.   ..+...   ..+....+...+...
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~l~~~i~~~   91 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEI--ETDK---NGFLQYDVLEALNMEKMMSAISCW   91 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGS--CBCT---TSCBCCSSGGGBCHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHh--hccc---cCCChhHHHHHhHHHHHHHHHHHH
Confidence            34456799999999999999999999988 89999999876432000  0000   000000   001111222222111


Q ss_pred             HcC---C--------CCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCC
Q 022042          156 LSQ---P--------DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSP  224 (303)
Q Consensus       156 l~~---~--------~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~  224 (303)
                      +..   .        ......+|+||+....     .......+|.+|||+++++++.+|+..|....            
T Consensus        92 l~~~~~~~~~~~~~~~~~~~~vi~eg~~~~~-----~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~------------  154 (207)
T 2qt1_A           92 MESARHSVVSTDQESAEEIPILIIEGFLLFN-----YKPLDTIWNRSYFLTIPYEECKRRRSTRVYQP------------  154 (207)
T ss_dssp             HHHHTTSSCCC-----CCCCEEEEECTTCTT-----CGGGTTTCSEEEEEECCHHHHHHHHHHSCCSS------------
T ss_pred             HhCCCCCCcCCCeeecCCCCEEEEeehHHcC-----cHHHHHhcCeeEEEECCHHHHHHHHHHcCCCc------------
Confidence            110   0        0124578999964221     11122358999999999999999998774210            


Q ss_pred             CCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHH---HHhhcceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          225 PETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL---SLYEDVTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       225 p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~---~~~~~~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                                    ++..+.+..   .++..+....   ..+.+.++.||++.+++++.++|.+.+.+
T Consensus       155 --------------e~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~  205 (207)
T 2qt1_A          155 --------------PDSPGYFDG---HVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ  205 (207)
T ss_dssp             --------------CCCTTHHHH---THHHHHHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred             --------------cchHHHHHH---HHhHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence                          000111111   1111112222   22335677899999999999999988754

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.52  E-value=7.4e-13  Score=115.66  Aligned_cols=41  Identities=24%  Similarity=0.448  Sum_probs=37.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE  122 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~  122 (303)
                      ..+.+|+|+|++||||||+++.|+++||+.+++.|.+++..
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~   65 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVL   65 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHh
Confidence            34579999999999999999999999999999999998664

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.52  E-value=1e-14  Score=127.47  Aligned_cols=177  Identities=21%  Similarity=0.243  Sum_probs=98.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc----------eeehHHHHHHHHHcCCcchHHHHHHHHcCCCc-------C
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLV----------HIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV-------P  144 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~----------~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~-------~  144 (303)
                      .+|++|+|+|++||||||+|+.|++++|+.          ++++|++++..      ....+. ....+...       .
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~------~~~~~~-~~~~g~~~f~~~~~~d   92 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL------TSEQKA-KALKGQFNFDHPDAFD   92 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC------CHHHHH-HHHTTCSCTTSGGGBC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc------Chhhhh-hhccCCCCCCCcchhh
Confidence            457899999999999999999999999987          79999887521      011111 11112111       1


Q ss_pred             hHHHHHHHHHHHcCC--------------------CCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHH
Q 022042          145 DEIVVTMVKERLSQP--------------------DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER  204 (303)
Q Consensus       145 ~~~~~~~l~~~l~~~--------------------~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~R  204 (303)
                      .+.+...+.......                    ......+|+||.......  .+..   .+|.+|||+++++++++|
T Consensus        93 ~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~--~~~~---~~d~vi~l~~~~e~~~~R  167 (252)
T 1uj2_A           93 NELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRD---LFQMKLFVDTDADTRLSR  167 (252)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHH---HCSEEEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH--HHHH---hcCeeEEEeCCHHHHHHH
Confidence            112233333322100                    012457999995432111  1222   267999999999999999


Q ss_pred             HhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHH-HHHHHH-HHhhcceEEE----cCCCCHHH
Q 022042          205 VVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHH-NVEAVL-SLYEDVTVEV----NGSVNKED  278 (303)
Q Consensus       205 l~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~-~~~~~~-~~~~~~~~~I----d~~~s~ee  278 (303)
                      +..|..                        ..+. ...+.+.+++..... .+.... ..+...-++|    |++.++++
T Consensus       168 ~~~R~~------------------------~~rg-~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~  222 (252)
T 1uj2_A          168 RVLRDI------------------------SERG-RDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINL  222 (252)
T ss_dssp             HHHHHH------------------------HHSC-CCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHH
T ss_pred             HHHHHH------------------------hhhC-CCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHH
Confidence            987631                        1111 124445445443221 111111 1122222344    88889999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 022042          279 VFAQIDVALTNLLEQRK  295 (303)
Q Consensus       279 v~~~I~~~l~~~l~~~~  295 (303)
                      ++++|.+.+...+.+.+
T Consensus       223 v~~~I~~~l~~~~~~~~  239 (252)
T 1uj2_A          223 IVQHIQDILNGGPSKRQ  239 (252)
T ss_dssp             HHHHHHHHHHC------
T ss_pred             HHHHHHHHHccchhhhh
Confidence            99999999987776544

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.52  E-value=9.2e-14  Score=117.39  Aligned_cols=171  Identities=12%  Similarity=0.210  Sum_probs=94.0

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCC-ceeehHHHHHHHHH---cCCc----chHHHHHHHHcCCCcChH------
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGL-VHIAAGDLLRAEIA---AGSE----NGKRAKEHMEKGQLVPDE------  146 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~-~~i~~d~l~~~~~~---~~~~----~~~~i~~~~~~g~~~~~~------  146 (303)
                      +..+++|+|+|++||||||+++.|++.++. ..++.....|....   .+..    ..+.+......+..+...      
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNF   88 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCe
Confidence            446679999999999999999999998842 22211111100000   0000    001112222222221100      


Q ss_pred             --HHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCC-CcEEEEEE-cCHHHHHHHHhcCCCCCCCCceecccC
Q 022042          147 --IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQ-PDLFILLE-VPEDTLVERVVGRRLDPVTGKIYHVKY  222 (303)
Q Consensus       147 --~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~-pd~vI~L~-~~~e~~~~Rl~~R~~~~~~g~~~~~~~  222 (303)
                        .....+...+..    +..+|+|+.+....   .+.+.... ..++|||+ ++.+++.+|+.+|..            
T Consensus        89 ~~~~~~~i~~~l~~----g~~vi~d~~~~~~~---~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~------------  149 (204)
T 2qor_A           89 YGTLKSEYDLAVGE----GKICLFEMNINGVK---QLKESKHIQDGIYIFVKPPSIDILLGRLKNRNT------------  149 (204)
T ss_dssp             EEEEHHHHHHHHHT----TCEEEEECCHHHHH---HHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTT------------
T ss_pred             ecCCHHHHHHHHHc----CCeEEEEECHHHHH---HHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC------------
Confidence              001122333332    67899997553332   23332210 13789999 999999999988741            


Q ss_pred             CCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHH-HHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042          223 SPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEA-VLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL  291 (303)
Q Consensus       223 ~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~-~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l  291 (303)
                                       +.++.+.+|+...+....+ ....+ +  ++|+++ ++++++++|.+.|...+
T Consensus       150 -----------------~~~~~i~~rl~~~~~~~~~~~~~~~-d--~vi~n~-~~e~~~~~i~~~i~~~~  198 (204)
T 2qor_A          150 -----------------EKPEEINKRMQELTREMDEADKVGF-N--YFIVND-DLARTYAELREYLLGSY  198 (204)
T ss_dssp             -----------------SCHHHHHHHHHHHHHHHHHHHHHTC-S--EEEECS-SHHHHHHHHHHHHHHHC
T ss_pred             -----------------CCHHHHHHHHHHHHHHHHHhhhccC-c--EEEECc-CHHHHHHHHHHHHHHHh
Confidence                             2356677777766544332 22222 2  235555 89999999999997654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.51  E-value=1.4e-14  Score=129.54  Aligned_cols=122  Identities=21%  Similarity=0.173  Sum_probs=76.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      +++|+|+|+|||||||+++.|++++ |+.+++.|. ++..+..... +.. ..+...+.....+.+...+...+... ..
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~-~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~   77 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGG-DS   77 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSC-TT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccH-HHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhc-cC
Confidence            3689999999999999999999985 999999994 4444332111 100 00000000001122223334444211 33


Q ss_pred             CCcEEEcCCCCCHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          163 ENGWLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       163 ~~~~Vldg~p~~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      +.++|+|+++....+...|.+   ....+..+|||++|.+++++|+.+|.
T Consensus        78 g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~  127 (301)
T 1ltq_A           78 VKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG  127 (301)
T ss_dssp             CCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence            678999998877666555543   22345689999999999999999885

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.50  E-value=1.6e-13  Score=116.95  Aligned_cols=171  Identities=16%  Similarity=0.225  Sum_probs=97.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH----HHcCCcchHHHHHH-------H-----------HcC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE----IAAGSENGKRAKEH-------M-----------EKG  140 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~----~~~~~~~~~~i~~~-------~-----------~~g  140 (303)
                      ++++|+|+|++||||||+++.|++.+|+.+++.|.+++..    ...+.  +..+.+.       +           ..|
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g   79 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDN   79 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCC
Confidence            4578999999999999999999999999999999999864    23332  2233332       1           122


Q ss_pred             CCcCh----HHHH-------------HHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHH
Q 022042          141 QLVPD----EIVV-------------TMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVE  203 (303)
Q Consensus       141 ~~~~~----~~~~-------------~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~  203 (303)
                      ..+..    ..+.             ..+....... ..++++|++|-...       .......+++|||++|++++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~-~~~~~~vi~g~~~~-------~~~~~~~~~vi~l~a~~e~~~~  151 (219)
T 2h92_A           80 EDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKEL-AAEKGIVMDGRDIG-------TVVLPDADLKVYMIASVEERAE  151 (219)
T ss_dssp             EECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHH-HTTCCEEEEESSCC-------CCCCTTCSEEEEEECCHHHHHH
T ss_pred             ccchhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHh-ccCCcEEEEcCCcc-------ceecCCCCEEEEEECCHHHHHH
Confidence            21111    1111             1111111111 12467999983110       0011236789999999999999


Q ss_pred             HHhcCCCCCCCCceecccCCCCCchHHHhhhccCC-CCcHHHHHHHHHHHH--HHHHHHHHHhhc-ceEEEcCC-CCHHH
Q 022042          204 RVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF-DDTEEKVKLRLKTHH--HNVEAVLSLYED-VTVEVNGS-VNKED  278 (303)
Q Consensus       204 Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~-~d~~e~~~~r~~~~~--~~~~~~~~~~~~-~~~~Id~~-~s~ee  278 (303)
                      |+.++.                         ..|. .+..+.+.+++....  .....+...|.. ..++||++ .++++
T Consensus       152 R~~~~~-------------------------~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~~ee  206 (219)
T 2h92_A          152 RRYKDN-------------------------QLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEE  206 (219)
T ss_dssp             HHHHHH-------------------------HHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCCHHH
T ss_pred             HHHHHH-------------------------HhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECCCCCHHH
Confidence            975320                         0011 123455555554321  111111122332 23778887 49999


Q ss_pred             HHHHHHHHHH
Q 022042          279 VFAQIDVALT  288 (303)
Q Consensus       279 v~~~I~~~l~  288 (303)
                      ++++|.+.+.
T Consensus       207 ~~~~I~~~l~  216 (219)
T 2h92_A          207 VTDEILAMVS  216 (219)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988774

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.49  E-value=4.1e-13  Score=112.54  Aligned_cols=43  Identities=26%  Similarity=0.482  Sum_probs=39.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHc
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA  125 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~  125 (303)
                      ..++|+|+|++||||||+++.|++.+|++++++|++.++....
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~   53 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE   53 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH
Confidence            4579999999999999999999999999999999999887653

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.47  E-value=2.7e-13  Score=117.15  Aligned_cols=173  Identities=18%  Similarity=0.272  Sum_probs=99.7

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH----HcCCcch--HHHHHHH-----------------
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI----AAGSENG--KRAKEHM-----------------  137 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~----~~~~~~~--~~i~~~~-----------------  137 (303)
                      ...+.+|+|+|++||||||+++.|++++|+.+++.|++++...    ..+.+..  ..+.+++                 
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i   92 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLV   92 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEE
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceE
Confidence            3456799999999999999999999999999999999998743    2333321  1122221                 


Q ss_pred             -HcCCCc----ChHHHH-------------HHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHH
Q 022042          138 -EKGQLV----PDEIVV-------------TMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPED  199 (303)
Q Consensus       138 -~~g~~~----~~~~~~-------------~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e  199 (303)
                       ..|..+    ..+.+.             ..+...+.... .++++|+||+....   ..+.    ..+++|||+++++
T Consensus        93 ~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~-~~~~~v~~g~~~~~---~~l~----~~d~vi~L~a~~e  164 (236)
T 1q3t_A           93 FVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIA-QQGGIVMDGRDIGT---VVLP----QAELKIFLVASVD  164 (236)
T ss_dssp             EETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHH-TTSCEEEECSSCSS---SSGG----GCSEEEEEECCHH
T ss_pred             eECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhc-ccCCEEEECCcchh---hhcc----CCCEEEEEECCHH
Confidence             112211    111111             11111111111 25689999875421   0111    3579999999999


Q ss_pred             HHHHHHh----cCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHH-HHHHH-HHHHHHhhc-ceEEEcC
Q 022042          200 TLVERVV----GRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKT-HHHNV-EAVLSLYED-VTVEVNG  272 (303)
Q Consensus       200 ~~~~Rl~----~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~-~~~~~-~~~~~~~~~-~~~~Id~  272 (303)
                      ++.+|+.    .|..                            ....+.+.+++.. .+... ..+...|.. ..++||+
T Consensus       165 ~~~~R~~~~~~~R~~----------------------------~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~  216 (236)
T 1q3t_A          165 ERAERRYKENIAKGI----------------------------ETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDT  216 (236)
T ss_dssp             HHHHHHHHHHHHTTC----------------------------CCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEEC
T ss_pred             HHHHHHHHHHHhcCC----------------------------CCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcC
Confidence            9999973    3320                            1123344444432 11100 001112222 2368898


Q ss_pred             C-CCHHHHHHHHHHHHHH
Q 022042          273 S-VNKEDVFAQIDVALTN  289 (303)
Q Consensus       273 ~-~s~eev~~~I~~~l~~  289 (303)
                      + .++++++++|.+.+..
T Consensus       217 ~~~s~eev~~~I~~~l~~  234 (236)
T 1q3t_A          217 TGLNIQEVVEKIKAEAEK  234 (236)
T ss_dssp             SSCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            8 5999999999988864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.47  E-value=5.1e-14  Score=123.67  Aligned_cols=86  Identities=13%  Similarity=0.118  Sum_probs=52.6

Q ss_pred             CCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHH--HHHHHHHh
Q 022042          186 FQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHN--VEAVLSLY  263 (303)
Q Consensus       186 ~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~--~~~~~~~~  263 (303)
                      ..||++|||++|++++++|+.+|..      .++.               ....+..+.+..+++.|.+.  ..+.+..+
T Consensus       173 ~~pd~vi~L~~~~e~~~~Ri~~R~r------~~~~---------------~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~  231 (263)
T 1p5z_B          173 LELDGIIYLQATPETCLHRIYLRGR------NEEQ---------------GIPLEYLEKLHYKHESWLLHRTLKTNFDYL  231 (263)
T ss_dssp             HCCSEEEEEECCHHHHHHHHHHHCC------GGGT---------------TCCHHHHHHHHHHHHHHHTTCCCCCSCGGG
T ss_pred             CCCCeEEEEECCHHHHHHHHHhcCC------cccc---------------CccHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence            4699999999999999999987731      1000               00111223333333333221  00111112


Q ss_pred             -hcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042          264 -EDVTVEVNGSVNKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       264 -~~~~~~Id~~~s~eev~~~I~~~l~~~l~  292 (303)
                       ...+++||++.++++|+++|.+.|.+.+.
T Consensus       232 ~~~~~~~Id~~~~~eev~~~I~~~l~~~l~  261 (263)
T 1p5z_B          232 QEVPILTLDVNEDFKDKYESLVEKVKEFLS  261 (263)
T ss_dssp             GGSCEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence             23578899999999999999999987653

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.46  E-value=4.1e-12  Score=107.19  Aligned_cols=169  Identities=14%  Similarity=0.129  Sum_probs=92.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcch-HHHHHHHHcCC--------------CcChHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENG-KRAKEHMEKGQ--------------LVPDEI  147 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~-~~i~~~~~~g~--------------~~~~~~  147 (303)
                      +.++|.|.|++||||||+++.||+++|+++++ +++++..... .... ..+...-+...              ...+..
T Consensus         5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~-~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~   82 (201)
T 3fdi_A            5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKD-GRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDI   82 (201)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHh-cCCCHHHHHHHhhhchhHHHHHhccccccccccHHH
Confidence            34689999999999999999999999999999 8887653211 1010 11111100000              000111


Q ss_pred             HHHHHHHHHcCCCC-CCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCC
Q 022042          148 VVTMVKERLSQPDS-QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE  226 (303)
Q Consensus       148 ~~~~l~~~l~~~~~-~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~  226 (303)
                       .....+.+.+... ..+++|++|..  -..+  +...  ...+.|||++|.+++.+|+.++.                 
T Consensus        83 -~~~~~~~i~~la~~~~~~~Vi~Gr~--g~~v--l~~~--~~~~~V~L~A~~e~r~~R~~~~~-----------------  138 (201)
T 3fdi_A           83 -AIRQFNFIRKKANEEKESFVIVGRC--AEEI--LSDN--PNMISAFILGDKDTKTKRVMERE-----------------  138 (201)
T ss_dssp             -HHHHHHHHHHHHHTSCCCEEEESTT--HHHH--TTTC--TTEEEEEEEECHHHHHHHHHHHH-----------------
T ss_pred             -HHHHHHHHHHHHhhcCCCEEEEECC--cchh--cCCC--CCeEEEEEECCHHHHHHHHHHHh-----------------
Confidence             1112222211110 13568888731  1111  1111  12489999999999999997652                 


Q ss_pred             chHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh--------cceEEEcCC-CCHHHHHHHHHHHHHH
Q 022042          227 TDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE--------DVTVEVNGS-VNKEDVFAQIDVALTN  289 (303)
Q Consensus       227 ~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~--------~~~~~Id~~-~s~eev~~~I~~~l~~  289 (303)
                                  .-..+.+.+++.........++..|.        ..-++||++ .+++++++.|.+.++.
T Consensus       139 ------------~~~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~  198 (201)
T 3fdi_A          139 ------------GVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDS  198 (201)
T ss_dssp             ------------TCCHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHT
T ss_pred             ------------CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHH
Confidence                        01133444455544444444444431        123567765 6999999999887753

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.44  E-value=5.5e-12  Score=108.04  Aligned_cols=170  Identities=16%  Similarity=0.181  Sum_probs=94.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCC----cc---hHHHHH-HHH---cC------------
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGS----EN---GKRAKE-HME---KG------------  140 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~----~~---~~~i~~-~~~---~g------------  140 (303)
                      .++|+|.|++||||||+++.|++++|+.+++ .++++.......    .+   ++.... ++.   .+            
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~   92 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSPN   92 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC-------------------------------------
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhcccccccccccccc
Confidence            5799999999999999999999999999999 666665444311    01   111000 000   00            


Q ss_pred             -CCcChHHHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHH--HhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCce
Q 022042          141 -QLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALK--KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKI  217 (303)
Q Consensus       141 -~~~~~~~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~--~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~  217 (303)
                       ....++.+.....+.+.+... .+++|+.|..  -..+  +.  ... ...++|||++|.+++.+|+.++..       
T Consensus        93 ~~~~~~~~~f~~~~~~i~~la~-~~~~Vi~Grg--gg~v--l~~~~~~-~~~~~VfL~A~~e~r~~Ri~~~~~-------  159 (223)
T 3hdt_A           93 DKLTSPENLFKFQSEVMRELAE-SEPCIFVGRA--AGYV--LDQDEDI-ERLIRIFVYTDKVKKVQRVMEVDC-------  159 (223)
T ss_dssp             -----HHHHHHHHHHHHHHHHH-HSCEEEESTT--HHHH--HHHCTTC-CEEEEEEEECCHHHHHHHHHHHHT-------
T ss_pred             cccccHHHHHHHHHHHHHHHHh-CCCEEEEeCC--cchh--cccccCC-CCeEEEEEECCHHHHHHHHHHhcC-------
Confidence             000111111111122222111 2457777632  1111  21  111 125899999999999999976520       


Q ss_pred             ecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh--------cceEEEcCC-CCHHHHHHHHHHHHH
Q 022042          218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE--------DVTVEVNGS-VNKEDVFAQIDVALT  288 (303)
Q Consensus       218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~--------~~~~~Id~~-~s~eev~~~I~~~l~  288 (303)
                                            -..+...+++........+++.+|-        ..-++||++ .+++++++.|.+.++
T Consensus       160 ----------------------~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~  217 (223)
T 3hdt_A          160 ----------------------IDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIR  217 (223)
T ss_dssp             ----------------------CCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHH
T ss_pred             ----------------------CCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHH
Confidence                                  1133445555555555555555431        234567765 699999999988876


Q ss_pred             H
Q 022042          289 N  289 (303)
Q Consensus       289 ~  289 (303)
                      .
T Consensus       218 ~  218 (223)
T 3hdt_A          218 L  218 (223)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.40  E-value=5e-12  Score=108.86  Aligned_cols=42  Identities=17%  Similarity=0.331  Sum_probs=37.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI  123 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~  123 (303)
                      +++++|+|.|++||||||+++.|+++||+.+++.|.+++...
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~   48 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIAT   48 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence            356799999999999999999999999999999999987753

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.39  E-value=5.2e-12  Score=103.77  Aligned_cols=119  Identities=13%  Similarity=0.087  Sum_probs=65.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCcee--ehHHHHHHHHHcC--CcchHHHHHHHHcCCCc-Ch---HH---HHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHI--AAGDLLRAEIAAG--SENGKRAKEHMEKGQLV-PD---EI---VVTMV  152 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i--~~d~l~~~~~~~~--~~~~~~i~~~~~~g~~~-~~---~~---~~~~l  152 (303)
                      +++|+|+|+|||||||+++.|+++++..++  +.|++........  ...+..+.+   .+... ..   ..   +...+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   79 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDA---DGGVSIGPEFRALEGAWAEGV   79 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECT---TSCEEECHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccC---CCccccchhHHHHHHHHHHHH
Confidence            468999999999999999999999986655  5777654321110  000000000   00000 00   11   11112


Q ss_pred             HHHHcCCCCCCCcEEEcCCCC-CHHHHHHH-HHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          153 KERLSQPDSQENGWLLDGYPR-SLSQATAL-KKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       153 ~~~l~~~~~~~~~~Vldg~p~-~~~~~~~l-~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      ...+.    .+..+|+|+... .......+ ......+..+|||++|.+++.+|+.+|.
T Consensus        80 ~~~~~----~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~  134 (178)
T 1qhx_A           80 VAMAR----AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG  134 (178)
T ss_dssp             HHHHH----TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred             HHHHh----cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhC
Confidence            22222    245688888422 22211112 2222234468899999999999999885

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.37  E-value=2.3e-12  Score=109.32  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=63.2

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhC------CceeehHHHHHHHHHcCCcchHHH-HHHHHcCCCcChHHHHHHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYG------LVHIAAGDLLRAEIAAGSENGKRA-KEHMEKGQLVPDEIVVTMVK  153 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg------~~~i~~d~l~~~~~~~~~~~~~~i-~~~~~~g~~~~~~~~~~~l~  153 (303)
                      ...+++|+|+|++||||||+++.|++.++      +.+++.|.+ +..+.....+.... ...+        ..+...+.
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~-r~~l~~~~~~~~~~r~~~~--------~~~~~~~~   92 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI-RFGLNKDLGFSEADRNENI--------RRIAEVAK   92 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH-TTTTTTTCCSSHHHHHHHH--------HHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH-hhhhccccCCCHHHHHHHH--------HHHHHHHH
Confidence            34568999999999999999999999886      667765544 22111110010000 0000        00111122


Q ss_pred             HHHcCCCCCCCcEEEcCCCCC-HHHHHHHHH---------hCCCCcEEEEEEcCHHHHHHHH
Q 022042          154 ERLSQPDSQENGWLLDGYPRS-LSQATALKK---------YGFQPDLFILLEVPEDTLVERV  205 (303)
Q Consensus       154 ~~l~~~~~~~~~~Vldg~p~~-~~~~~~l~~---------~~~~pd~vI~L~~~~e~~~~Rl  205 (303)
                      ..+..    +..+|+| |... ......+..         ....|+++|||++|++++.+|+
T Consensus        93 ~~l~~----g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~  149 (211)
T 1m7g_A           93 LFADS----NSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD  149 (211)
T ss_dssp             HHHHT----TCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred             HHHHC----CCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence            22322    5667888 5432 122222332         1125799999999999999995

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.34  E-value=1.3e-11  Score=102.43  Aligned_cols=111  Identities=12%  Similarity=0.095  Sum_probs=61.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHH--HHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVT--MVKE  154 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~--~l~~  154 (303)
                      +++++|+|+|++||||||+++.|++.++     +.+++.|.+ +..+..+..+...-+          ...+..  .+..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~r----------~~~~~~~~~~~~   79 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA-RTTVSEGAGFTREER----------LRHLKRIAWIAR   79 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HTTTTTTCCCCHHHH----------HHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH-HHHHhhccCCChhhH----------HHHHHHHHHHHH
Confidence            3467999999999999999999999884     245665544 322111111100000          000111  1111


Q ss_pred             HHcCCCCCCCcEEEcCCCCCHHHHHHH---HHhCCCCcEEEEEEcCHHHHHHHHh
Q 022042          155 RLSQPDSQENGWLLDGYPRSLSQATAL---KKYGFQPDLFILLEVPEDTLVERVV  206 (303)
Q Consensus       155 ~l~~~~~~~~~~Vldg~p~~~~~~~~l---~~~~~~pd~vI~L~~~~e~~~~Rl~  206 (303)
                      .+..   .+..+|+|++.........+   ......|+++|||++|++++.+|+.
T Consensus        80 ~~~~---~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~  131 (186)
T 2yvu_A           80 LLAR---NGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDP  131 (186)
T ss_dssp             HHHT---TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCH
T ss_pred             HHHh---CCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhh
Confidence            1111   23445667754332222222   2222358899999999999999974

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=99.31  E-value=2e-12  Score=111.22  Aligned_cols=81  Identities=17%  Similarity=0.173  Sum_probs=38.5

Q ss_pred             hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 022042          184 YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY  263 (303)
Q Consensus       184 ~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~  263 (303)
                      .+..||++|||++|++++++|+.+|..      .                 ..+ .. .....+|+..++..+   ...|
T Consensus       143 ~~~~pD~vi~Ld~~~e~~~~Ri~~R~r------~-----------------~e~-~~-~~~~~~rv~~~~~~~---~~~~  194 (230)
T 2vp4_A          143 IHVQADLIIYLRTSPEVAYERIRQRAR------S-----------------EES-CV-PLKYLQELHELHEDW---LIHQ  194 (230)
T ss_dssp             BCCCCSEEEEEECCHHHHHHHHHHHCC------G-----------------GGT-TC-CHHHHHHHHHHHHHH---HTSC
T ss_pred             hcCCCCEEEEEeCCHHHHHHHHHHcCC------c-----------------ccc-cC-cHHHHHHHHHHHHHH---HHHh
Confidence            356899999999999999999987631      0                 000 01 112344454444332   2222


Q ss_pred             ----hcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042          264 ----EDVTVEVNGSVNKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       264 ----~~~~~~Id~~~s~eev~~~I~~~l~~~l~  292 (303)
                          ...+++||+++++++|.++|.+.+.+++.
T Consensus       195 ~~~~~~~~~vId~~~~~eev~~~I~~~l~~~~~  227 (230)
T 2vp4_A          195 RRPQSCKVLVLDADLNLENIGTEYQRSESSIFD  227 (230)
T ss_dssp             CSSCCCEEEEEECCC------------------
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence                23578899999999999999999987664

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.26  E-value=3.5e-12  Score=105.17  Aligned_cols=113  Identities=13%  Similarity=0.181  Sum_probs=61.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHH-HHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHH--HHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY---GLVHIAAGD-LLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMV--KER  155 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~-l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l--~~~  155 (303)
                      .++++|+|+|++||||||+++.|++.+   |++++.++. .++..+...  .+....    .    .+..+..+.  ...
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~--~~~~~~----~----~~~~~~~~~~~~~~   72 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKN--LGFSPE----D----REENVRRIAEVAKL   72 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTT--CCSSHH----H----HHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhc--cccccc----c----HHHHHHHHHHHHHH
Confidence            346789999999999999999999988   887775542 222211110  000000    0    011111111  111


Q ss_pred             HcCCCCCCCcEEEcCCCCC----HHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042          156 LSQPDSQENGWLLDGYPRS----LSQATALKKYGFQPDLFILLEVPEDTLVERVVGR  208 (303)
Q Consensus       156 l~~~~~~~~~~Vldg~p~~----~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R  208 (303)
                      +..    ...+++.++...    ......+......|+.+|||++|++++.+|+.+|
T Consensus        73 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~  125 (179)
T 2pez_A           73 FAD----AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG  125 (179)
T ss_dssp             HHH----TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred             HHH----CCCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence            211    123455443222    1222222222336889999999999999998654

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.25  E-value=3.5e-10  Score=94.90  Aligned_cols=112  Identities=12%  Similarity=0.084  Sum_probs=62.8

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCc--eeehHHHHHHHHHcCCcch-HHHHHHHHcCCCcChHHHHHHHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY---GLV--HIAAGDLLRAEIAAGSENG-KRAKEHMEKGQLVPDEIVVTMVKE  154 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l---g~~--~i~~d~l~~~~~~~~~~~~-~~i~~~~~~g~~~~~~~~~~~l~~  154 (303)
                      ..++.+|+|+|++||||||+++.|++.+   |..  +++.+++... +..+..+. ......+        ..+... ..
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~-~~   91 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHG-LNRDLSFKAEDRAENI--------RRVGEV-AK   91 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTT-TTTTCCSSHHHHHHHH--------HHHHHH-HH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhH-hhcccCcChHHHHHHH--------HHHHHH-HH
Confidence            3567899999999999999999999998   655  7877665321 11111010 0000000        000011 11


Q ss_pred             HHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCC-CCcEEEEEEcCHHHHHHHH
Q 022042          155 RLSQPDSQENGWLLDGYPRSLSQATALKKYGF-QPDLFILLEVPEDTLVERV  205 (303)
Q Consensus       155 ~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~-~pd~vI~L~~~~e~~~~Rl  205 (303)
                      .+..   .+..+|.+...........+..... ...++|||+++.+++.+|+
T Consensus        92 ~~~~---~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~  140 (200)
T 3uie_A           92 LFAD---AGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARD  140 (200)
T ss_dssp             HHHH---TTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred             HHHh---CCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence            1111   1445565553333344444544322 2346799999999999997

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.25  E-value=8.9e-11  Score=104.38  Aligned_cols=117  Identities=17%  Similarity=0.239  Sum_probs=70.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh--CCceeehHHHHHHHHHcCCcchHHHHHHHHcCC-----CcChHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY--GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-----LVPDEIVVTMVKE  154 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l--g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~-----~~~~~~~~~~l~~  154 (303)
                      ..|++|+|+|+|||||||+++.|++++  ++.+|+.|.+.... .   .+...+.. +....     ..........+..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~-~---~~~~~~~~-~~~~a~~~~~~~~~~~~~~~v~~  105 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH-P---NFDELVKL-YEKDVVKHVTPYSNRMTEAIISR  105 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTS-T---THHHHHHH-HGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhc-h---hhHHHHHH-ccchhhhhhhHHHHHHHHHHHHH
Confidence            356799999999999999999999999  78889886653211 0   01011111 11000     0011112233333


Q ss_pred             HHcCCCCCCCcEEEcCCCCCHHHHHHH----HHhCCCCcEEEEEEcCHHHH----HHHHhcC
Q 022042          155 RLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFILLEVPEDTL----VERVVGR  208 (303)
Q Consensus       155 ~l~~~~~~~~~~Vldg~p~~~~~~~~l----~~~~~~pd~vI~L~~~~e~~----~~Rl~~R  208 (303)
                      .+..    +..+|+|+......+...+    .+.+ .+..+++|.+|++++    .+|+..|
T Consensus       106 ~l~~----g~~vIld~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~~p~~~~~l~~~~Rl~~R  162 (287)
T 1gvn_B          106 LSDQ----GYNLVIEGTGRTTDVPIQTATMLQAKG-YETKMYVMAVPKINSYLGTIERYETM  162 (287)
T ss_dssp             HHHH----TCCEEECCCCCCSHHHHHHHHHHHTTT-CEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred             HHhc----CCeEEEECCCCCHHHHHHHHHHHHhCC-CcEEEEEEECCHHHHHHHHHHHHHHH
Confidence            3332    6779999976665433322    2223 344579999999999    7887655

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=99.22  E-value=1.5e-11  Score=106.40  Aligned_cols=29  Identities=31%  Similarity=0.481  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-CCc
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY-GLV  111 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l-g~~  111 (303)
                      +|++|+|+|++||||||+++.|++++ +..
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~   30 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWH   30 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcCCCe
Confidence            46799999999999999999999999 443

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=99.18  E-value=3.5e-13  Score=114.09  Aligned_cols=177  Identities=19%  Similarity=0.196  Sum_probs=89.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcc-hHHHHHHHHc--CCCcChHHHHHHH--------H
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSEN-GKRAKEHMEK--GQLVPDEIVVTMV--------K  153 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~-~~~i~~~~~~--g~~~~~~~~~~~l--------~  153 (303)
                      ++|+|+|++||||||+++.|++.|+...+++.. ++. ...+++. +..++..+..  +....+.....++        .
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~-~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT-LAF-PRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAV   78 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE-EES-SEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE-Eee-cCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhH
Confidence            479999999999999999999998532222110 000 0001112 3333333321  1011111111111        0


Q ss_pred             HHHcCCCCCCCcEEEcCCCCCH--HH------------HHHHHHh-----C-CCCcEEEEEEcCHHHHHHHHhcCCCCCC
Q 022042          154 ERLSQPDSQENGWLLDGYPRSL--SQ------------ATALKKY-----G-FQPDLFILLEVPEDTLVERVVGRRLDPV  213 (303)
Q Consensus       154 ~~l~~~~~~~~~~Vldg~p~~~--~~------------~~~l~~~-----~-~~pd~vI~L~~~~e~~~~Rl~~R~~~~~  213 (303)
                      ..+......+..+|+|+|+...  .+            ...+...     + ..||.+|||++|++++.+|+.+|.... 
T Consensus        79 ~~i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~-  157 (214)
T 1gtv_A           79 HTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRD-  157 (214)
T ss_dssp             HHHHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEB-
T ss_pred             HHHHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccccc-
Confidence            1111111224568889876432  11            1112221     2 269999999999999999999884210 


Q ss_pred             CCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh-cceEEEcCCCCHHHHHHHHHH
Q 022042          214 TGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE-DVTVEVNGSVNKEDVFAQIDV  285 (303)
Q Consensus       214 ~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~-~~~~~Id~~~s~eev~~~I~~  285 (303)
                      .++.-             +++    +. .+.+.+++...+.   .+.+.+. ..+++||++++++++.++|..
T Consensus       158 ~~~~~-------------d~~----e~-~~~~~~~~~~~~~---~~~~~~~~~~~~vId~~~~~~~v~~~i~~  209 (214)
T 1gtv_A          158 PGRAR-------------DNY----ER-DAELQQRTGAVYA---ELAAQGWGGRWLVVGADVDPGRLAATLAP  209 (214)
T ss_dssp             BEEEE-------------EEE----EE-EHHHHHHHHHHHH---HHHHEEEEEEEEEEEEEEBHHHHHHHHC-
T ss_pred             ccccc-------------ccc----cc-cHHHHHHHHHHHH---HHHHhCCCCCEEEEeCCCCHHHHHHHhcC
Confidence            00000             000    00 1233444433222   2233332 356789999999999988754

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.17  E-value=5.8e-10  Score=93.46  Aligned_cols=167  Identities=16%  Similarity=0.205  Sum_probs=84.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH---HcCCc----chHHHHHHHHcCCCcC-----h---HH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI---AAGSE----NGKRAKEHMEKGQLVP-----D---EI  147 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~---~~~~~----~~~~i~~~~~~g~~~~-----~---~~  147 (303)
                      .+.+|+|+||+||||||+++.|+..+....++...+.+...   ..+..    ....+......+....     .   ..
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT   85 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence            45689999999999999999999876422222111100000   00000    0011111111111000     0   00


Q ss_pred             HHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCc
Q 022042          148 VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPET  227 (303)
Q Consensus       148 ~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~  227 (303)
                      ....+.+.+..    +..+|+|+.+....+   +......+..++++..+.+++.+|+.+|..                 
T Consensus        86 ~~~~i~~~l~~----g~~vi~d~~~~~~~~---~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~-----------------  141 (205)
T 3tr0_A           86 EKDWVLRQLKA----GRDVLLEIDWQGARQ---IRELFPPALSIFILPPSIEALRERLIKRRQ-----------------  141 (205)
T ss_dssp             EHHHHHHHHHT----TCEEEEECCHHHHHH---HHHHCTTCEEEEEECSCHHHHHHHHHTCTT-----------------
T ss_pred             hHHHHHHHHHc----CCeEEEEECHHHHHH---HHHhCCCcEEEEEECcCHHHHHHHHHHhCC-----------------
Confidence            00122233333    456788875433322   333333343344444569999999998852                 


Q ss_pred             hHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          228 DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       228 ~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                                  +.++.+.+|+..+....    .++...-++|+++ +++++.+++.++|...
T Consensus       142 ------------~~~~~i~~rl~~~~~~~----~~~~~~d~vi~n~-~~~~~~~~l~~~i~~~  187 (205)
T 3tr0_A          142 ------------DDTAIIEQRLALAREEM----AHYKEFDYLVVND-NFDQAVQNLIHIISAE  187 (205)
T ss_dssp             ------------SCSSTHHHHHHHHHHHH----TTGGGCSEEEECS-SHHHHHHHHHHHHHHH
T ss_pred             ------------CCHHHHHHHHHHHHHHH----hcccCCCEEEECC-CHHHHHHHHHHHHHHH
Confidence                        22344566666664432    2223333445555 9999999999988753

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.16  E-value=7.6e-10  Score=107.68  Aligned_cols=112  Identities=13%  Similarity=0.159  Sum_probs=64.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CCceeehH-HHHHHHHHcCCcchHHH-HHHHHcCCCcChHHHHHHHHHHHc
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY---GLVHIAAG-DLLRAEIAAGSENGKRA-KEHMEKGQLVPDEIVVTMVKERLS  157 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d-~l~~~~~~~~~~~~~~i-~~~~~~g~~~~~~~~~~~l~~~l~  157 (303)
                      ++++|+|+|.+||||||+++.|++++   |+.++.+| +.++..+.....+.... .+.+.        .+..++...+.
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r--------~i~eva~~~l~  122 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR--------RIAEVAKLFAD  122 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHH--------HHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHH--------HHHHHHHHHHh
Confidence            57899999999999999999999999   88877764 44443221111111000 00000        01111121221


Q ss_pred             CCCCCCCcEEEcCCCCC----HHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhc
Q 022042          158 QPDSQENGWLLDGYPRS----LSQATALKKYGFQPDLFILLEVPEDTLVERVVG  207 (303)
Q Consensus       158 ~~~~~~~~~Vldg~p~~----~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~  207 (303)
                      .    +..+|.+ |...    ......+......++++|||++|.+++.+|+.+
T Consensus       123 ~----G~iVI~d-~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r  171 (630)
T 1x6v_B          123 A----GLVCITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK  171 (630)
T ss_dssp             T----TCEEEEE-CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred             C----CCEEEEe-CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc
Confidence            1    3334444 3222    223333333344578999999999999999863

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.16  E-value=2.7e-12  Score=107.94  Aligned_cols=166  Identities=23%  Similarity=0.272  Sum_probs=68.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHHHHHHHcCCc--------chHHHHHHHHcCCCcChH-------
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAGSE--------NGKRAKEHMEKGQLVPDE-------  146 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~~~~~~~~~~--------~~~~i~~~~~~g~~~~~~-------  146 (303)
                      .+.+|+|+|++||||||+++.|+..+ ....+..+...+... .+..        ....+......+..+...       
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY   83 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence            45799999999999999999999876 211111111100000 0000        011122222222211100       


Q ss_pred             -HHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCc-EEEEEE-cCHHHHHHHHhcCCCCCCCCceecccCC
Q 022042          147 -IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPD-LFILLE-VPEDTLVERVVGRRLDPVTGKIYHVKYS  223 (303)
Q Consensus       147 -~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd-~vI~L~-~~~e~~~~Rl~~R~~~~~~g~~~~~~~~  223 (303)
                       .....+...+..    +..+|+|+.......   +...  .+| +++|+. ++.+++.+|+.+|..             
T Consensus        84 g~~~~~i~~~l~~----g~~vv~d~~~~~~~~---~~~~--~~~~~~i~~~~~~~~~~~~Rl~~R~~-------------  141 (207)
T 2j41_A           84 GTPVQYVKDTMDE----GHDVFLEIEVEGAKQ---VRKK--FPDALFIFLAPPSLEHLRERLVGRGT-------------  141 (207)
T ss_dssp             EEEHHHHHHHHHT----TCEEEEECCGGGHHH---HHHH--CTTSEEEEEECCC--------------------------
T ss_pred             CCCHHHHHHHHHc----CCeEEEEECHHHHHH---HHHh--cCCeEEEEEECCCHHHHHHHHHhcCC-------------
Confidence             001222333332    567889985443333   2222  245 344444 567899999987741             


Q ss_pred             CCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042          224 PPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       224 ~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~  292 (303)
                                      +..+.+.+|+..+.....    ++...-++|+++ ++++++++|.+.+.....
T Consensus       142 ----------------~~~~~~~~rl~~~~~~~~----~~~~~d~vI~n~-~~e~~~~~i~~~l~~~~~  189 (207)
T 2j41_A          142 ----------------ESDEKIQSRINEARKEVE----MMNLYDYVVVND-EVELAKNRIQCIVEAEHL  189 (207)
T ss_dssp             ------------------------------CGGG----GGGGCSEEEECS-SHHHHHHHHHHHHHHHHT
T ss_pred             ----------------CCHHHHHHHHHHHHHHHh----ccccCCEEEECC-CHHHHHHHHHHHHHHhhc
Confidence                            223345555555443221    222222446666 899999999999977543

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.15  E-value=8.4e-11  Score=102.54  Aligned_cols=119  Identities=20%  Similarity=0.312  Sum_probs=70.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC--CceeehHHHHHHHHHc----CCcchHHHHHHHHcCCCcChHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG--LVHIAAGDLLRAEIAA----GSENGKRAKEHMEKGQLVPDEIVVTMVKER  155 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg--~~~i~~d~l~~~~~~~----~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~  155 (303)
                      ..|++|+|+|+|||||||+++.|++.++  +.+++.|.+ +..+..    ....|..+.++....   .......++...
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~-r~~~~~~~~i~~~~g~~~~~~~~~~---~~~~~~~~~~~~  105 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF-RSQHPHYLELQQEYGKDSVEYTKDF---AGKMVESLVTKL  105 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG-GTTSTTHHHHHTTCSSTTHHHHHHH---HHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH-HHhchhHHHHHHHcCchHHHHhhHH---HHHHHHHHHHHH
Confidence            4567999999999999999999999996  456676654 221000    011121111111110   011122222322


Q ss_pred             HcCCCCCCCcEEEcCCCCCHHHHHH----HHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          156 LSQPDSQENGWLLDGYPRSLSQATA----LKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       156 l~~~~~~~~~~Vldg~p~~~~~~~~----l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      +..    +.++|+|+++....+...    +...+. +-.++||++|.+++.+|+.+|.
T Consensus       106 ~~~----g~~vVid~~~~~~~~~~~~~~~l~~~g~-~v~lv~l~~~~e~~~~R~~~R~  158 (253)
T 2p5t_B          106 SSL----GYNLLIEGTLRTVDVPKKTAQLLKNKGY-EVQLALIATKPELSYLSTLIRY  158 (253)
T ss_dssp             HHT----TCCEEEECCTTSSHHHHHHHHHHHHTTC-EEEEEEECCCHHHHHHHHHHHH
T ss_pred             Hhc----CCCEEEeCCCCCHHHHHHHHHHHHHCCC-cEEEEEEeCCHHHHHHHHHHHH
Confidence            322    457999998876554332    333332 3346788999999999998774

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.14  E-value=1.6e-10  Score=97.73  Aligned_cols=28  Identities=32%  Similarity=0.375  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ..+.+|+|+||+||||||+++.|++.++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3567899999999999999999999874

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.14  E-value=1.3e-10  Score=108.68  Aligned_cols=101  Identities=16%  Similarity=0.100  Sum_probs=73.0

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      ...+.+|+|+|+|||||||+|+.|++.+|+.+|+.|++-        .                .......+...+..  
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~----------------~~~~~~~~~~~l~~--  308 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG--------S----------------WQRCVSSCQAALRQ--  308 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC--------S----------------HHHHHHHHHHHHHT--
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH--------H----------------HHHHHHHHHHHHhc--
Confidence            345679999999999999999999999999999988751        0                11122233333433  


Q ss_pred             CCCCcEEEcCCCCCHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          161 SQENGWLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       161 ~~~~~~Vldg~p~~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                        +..+|+|+......+...+.+   ....+..+|||+++.+++++|+.+|.
T Consensus       309 --g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~  358 (416)
T 3zvl_A          309 --GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFRE  358 (416)
T ss_dssp             --TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHH
T ss_pred             --CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhc
Confidence              567999997666655544432   12235579999999999999999885

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.06  E-value=2.6e-10  Score=109.96  Aligned_cols=113  Identities=14%  Similarity=0.148  Sum_probs=66.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCC-----ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGL-----VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERL  156 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~-----~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l  156 (303)
                      ..+++|+|+|++||||||+++.|+++++.     .+++.|.+ ++.+..+..+...-+...       -+.+...+...+
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i-r~~l~~~~~f~~~er~~~-------l~~i~~~~~~~l  441 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV-RTHLSRGLGFSKEDRITN-------ILRVGFVASEIV  441 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH-HHHTCTTCCSSHHHHHHH-------HHHHHHHHHHHH
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh-hhhhcccccccHHHHHHH-------HHHHHHHHHHHH
Confidence            45689999999999999999999998863     66776654 443322222211111000       001111222222


Q ss_pred             cCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCc-EEEEEEcCHHHHHHHHh
Q 022042          157 SQPDSQENGWLLDGYPRSLSQATALKKYGFQPD-LFILLEVPEDTLVERVV  206 (303)
Q Consensus       157 ~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd-~vI~L~~~~e~~~~Rl~  206 (303)
                      .    .+.++|+|+..........+.+....++ ++|||++|.+++.+|+.
T Consensus       442 ~----~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~  488 (546)
T 2gks_A          442 K----HNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV  488 (546)
T ss_dssp             H----TTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCC
T ss_pred             h----CCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhh
Confidence            2    2677899963323333333443322356 89999999999999975

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=99.06  E-value=4.6e-09  Score=87.88  Aligned_cols=117  Identities=15%  Similarity=0.164  Sum_probs=73.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC---CceeehHHHHHHHHHc--CCcchH-------------HHHHHHHcCCCcC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAA--GSENGK-------------RAKEHMEKGQLVP  144 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg---~~~i~~d~l~~~~~~~--~~~~~~-------------~i~~~~~~g~~~~  144 (303)
                      .+++|+|+|.+||||+|+|+.|.+.+|   +..+++++.+++....  +-++..             .+..+...-....
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d   89 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQAD   89 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcC
Confidence            346999999999999999999998885   6789999999864332  111111             1111100000000


Q ss_pred             hHHHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHH
Q 022042          145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV  205 (303)
Q Consensus       145 ~~~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl  205 (303)
                      ...+..+.   +...  ....||+||. |...++++|.+.+..--.+|.+.++++++.+|.
T Consensus        90 ~~~~~~~~---~~~~--~~~~vII~dv-R~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg  144 (202)
T 3ch4_B           90 PGFFCRKI---VEGI--SQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG  144 (202)
T ss_dssp             TTTTHHHH---SBTC--CCSEEEECCC-CSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTT
T ss_pred             chHHHHHH---HHhc--CCCcEEEeCC-CCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHh
Confidence            01111111   1111  2357999998 888999989875322245899999999999994

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.04  E-value=1.2e-09  Score=92.05  Aligned_cols=39  Identities=26%  Similarity=0.414  Sum_probs=32.7

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CceeehHHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYG--LVHIAAGDLL  119 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg--~~~i~~d~l~  119 (303)
                      +.++.+|+|+|++||||||+++.|+..++  +.+++.|..+
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~   43 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY   43 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence            45677999999999999999999999988  8888877654

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.02  E-value=4.8e-10  Score=97.83  Aligned_cols=123  Identities=19%  Similarity=0.150  Sum_probs=70.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHH-HHH--cCCcchHHHHH---HHHcC-----CCcChHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRA-EIA--AGSENGKRAKE---HMEKG-----QLVPDEIVVTMV  152 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~-~~~--~~~~~~~~i~~---~~~~g-----~~~~~~~~~~~l  152 (303)
                      |++|+|+|++||||||+|+.|++++|+.+++.|++... .+.  ...+.......   .+...     .......+....
T Consensus         1 M~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~   80 (253)
T 2ze6_A            1 MLLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRL   80 (253)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHH
T ss_pred             CeEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHH
Confidence            35899999999999999999999999999999886421 000  00000000000   00000     012234444445


Q ss_pred             HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHh----CCCCcEEEEEEcCH-HHHHHHHhcCC
Q 022042          153 KERLSQPDSQENGWLLDGYPRSLSQATALKKY----GFQPDLFILLEVPE-DTLVERVVGRR  209 (303)
Q Consensus       153 ~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~----~~~pd~vI~L~~~~-e~~~~Rl~~R~  209 (303)
                      ...+ +....+..+|+++...  .....+...    ....-.+|||++|. +++.+|+.+|.
T Consensus        81 ~~~i-~~~~~g~~vIl~gg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~  139 (253)
T 2ze6_A           81 IFEV-DWRKSEEGLILEGGSI--SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV  139 (253)
T ss_dssp             HHHH-HTTTTSSEEEEEECCH--HHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred             HHHH-HHHhCCCCeEEeccHH--HHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence            5555 4333456778875321  222222221    11123689999997 99999999884

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=99.00  E-value=1.2e-09  Score=90.72  Aligned_cols=66  Identities=15%  Similarity=0.245  Sum_probs=40.1

Q ss_pred             ccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHH
Q 022042          220 VKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       220 ~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                      +...||+.+.+.+||..|..++++.+++|+.....+.....  ....-++|.| .++++.+++|.++|.
T Consensus       118 Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~~~--~~~fD~vIvN-ddle~a~~~l~~iI~  183 (186)
T 1ex7_A          118 LFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAE--TGAHDKVIVN-DDLDKAYKELKDFIF  183 (186)
T ss_dssp             EEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT--TTCSSEEEEC-SSHHHHHHHHHHHHT
T ss_pred             EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcc--ccCCcEEEEC-cCHHHHHHHHHHHHH
Confidence            44455565666666666667788999999988766543211  1111123333 478888888877763

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.94  E-value=1.8e-10  Score=102.55  Aligned_cols=38  Identities=18%  Similarity=0.294  Sum_probs=31.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLR  120 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~  120 (303)
                      ++++|+|+|++||||||+|+.|++.+|     +.+|++|++.+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            567899999999999999999999887     78899988774

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.90  E-value=1.4e-08  Score=86.87  Aligned_cols=26  Identities=15%  Similarity=0.227  Sum_probs=17.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH-HHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIK-EKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La-~~l  108 (303)
                      .+.+|+|+||+||||||+++.|+ ..+
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            45689999999999999999999 765

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=98.89  E-value=9.8e-09  Score=92.69  Aligned_cols=30  Identities=20%  Similarity=0.253  Sum_probs=26.3

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      ..++++|+|+|+.||||||+++.|+++++.
T Consensus         4 ~~~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            4 MVTIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            345689999999999999999999999853

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=98.86  E-value=3.2e-09  Score=101.84  Aligned_cols=119  Identities=13%  Similarity=0.192  Sum_probs=67.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC-----ceeehHHHHHHHHHcCCcchHHHHHHHHcCCC----cChHHHHHHH-
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGL-----VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL----VPDEIVVTMV-  152 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~-----~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~----~~~~~~~~~l-  152 (303)
                      .+.+|+++|.|||||||+|+.|++.+++     .+++.|++.+... ......    +++.....    .........+ 
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~-~~~~~~----~~f~~~~~~~~~~re~~~~~~l~  108 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAV-KQYSSY----NFFRPDNEEAMKVRKQCALAALR  108 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH-SCCCCG----GGGCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhc-cCCccc----cccCcccHHHHHHHHHHHHHHHH
Confidence            4568999999999999999999999843     3478888665543 221111    01110000    0001111111 


Q ss_pred             --HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcC-HHHHHHHHhcCC
Q 022042          153 --KERLSQPDSQENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVP-EDTLVERVVGRR  209 (303)
Q Consensus       153 --~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~-~e~~~~Rl~~R~  209 (303)
                        ...+..  ..+..+|+|+..........+.+    .+. ..++|++.|+ ++++.+|+.+|.
T Consensus       109 ~~~~~L~~--~~g~~VIvDat~~~~~~R~~~~~~a~~~g~-~v~~l~~~~~d~e~i~~ri~~r~  169 (520)
T 2axn_A          109 DVKSYLAK--EGGQIAVFDATNTTRERRHMILHFAKENDF-KAFFIESVCDDPTVVASNIMEVK  169 (520)
T ss_dssp             HHHHHHHH--SCCCEEEEESCCCSHHHHHHHHHHHHHHTC-EEEEEEEECCCHHHHHHHHHHHT
T ss_pred             HHHHHHHh--cCCceEEecCCCCCHHHHHHHHHHHHHcCC-eEEEEEEeCChHHHHHHHHHhhh
Confidence              112211  12567999997766655544432    232 3356677777 778888886664

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.85  E-value=3.4e-09  Score=102.69  Aligned_cols=111  Identities=9%  Similarity=0.101  Sum_probs=60.2

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhC----C--ceeehHHHHHHHHHcCCcchHHHHH-HHHcCCCcChHHHHHHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYG----L--VHIAAGDLLRAEIAAGSENGKRAKE-HMEKGQLVPDEIVVTMVK  153 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg----~--~~i~~d~l~~~~~~~~~~~~~~i~~-~~~~g~~~~~~~~~~~l~  153 (303)
                      ..++++|+|+|++||||||+|+.|+++++    .  .+++.|. ++..+..+..+...-+. .+        ..+..++.
T Consensus       393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~-ir~~l~~~~~f~~~er~~~i--------~ri~~v~~  463 (573)
T 1m8p_A          393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT-VRHELSSELGFTREDRHTNI--------QRIAFVAT  463 (573)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH-HHHHTCTTCCCSHHHHHHHH--------HHHHHHHH
T ss_pred             cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH-HHHHhccccCCChhHHHHHH--------HHHHHHHH
Confidence            34568999999999999999999999986    3  4555554 44332211111110000 00        00111222


Q ss_pred             HHHcCCCCCCCcEEEcCCCCCH---HHHHHHHHhCCCCcEEEEEEcCHHHHHHHH
Q 022042          154 ERLSQPDSQENGWLLDGYPRSL---SQATALKKYGFQPDLFILLEVPEDTLVERV  205 (303)
Q Consensus       154 ~~l~~~~~~~~~~Vldg~p~~~---~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl  205 (303)
                      ..+..    +..+|.+......   .....+.... .++++|||++|.+++.+|.
T Consensus       464 ~~~~~----g~~VI~~~is~~~~~R~~~r~l~~~~-g~~~~V~Lda~~ev~~~R~  513 (573)
T 1m8p_A          464 ELTRA----GAAVIAAPIAPYEESRKFARDAVSQA-GSFFLVHVATPLEHCEQSD  513 (573)
T ss_dssp             HHHHT----TCEEEEECCCCCHHHHHHHHHHHHTT-SEEEEEEECCCHHHHHHHC
T ss_pred             HHHhC----CCEEEEEcCCCcHHHHHHHHHHHHhc-CCeEEEEEeCCHHHHHHHh
Confidence            22222    4445665432112   2222222211 1468999999999999995

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.81  E-value=3.6e-08  Score=81.51  Aligned_cols=115  Identities=17%  Similarity=0.112  Sum_probs=63.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC-ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGL-VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~-~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      .+|+|+|++||||||+++.|++.++. .+++.+++.... ..+. .....       .........+.+..........+
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-~~~~-~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~   73 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-VGGY-RPPWE-------SDELLALTWKNITDLTVNFLLAQ   73 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-CTTC-CCGGG-------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-cccc-ccCcc-------chhHHHHHHHHHHHHHHHHHhcC
Confidence            47899999999999999999998765 778877664321 0000 00000       00000111111111111100113


Q ss_pred             CcEEEcCCCCCHHHHHHHHHh----CCC-CcEEEEEEcCHHHHHHHHhcCC
Q 022042          164 NGWLLDGYPRSLSQATALKKY----GFQ-PDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       164 ~~~Vldg~p~~~~~~~~l~~~----~~~-pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      ..+|+|++- .......+.+.    +.. .-.+++|+++.+++.+|+..|.
T Consensus        74 ~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~  123 (189)
T 2bdt_A           74 NDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK  123 (189)
T ss_dssp             CEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred             CcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence            468899852 33322222222    322 3357899999999999998875

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.80  E-value=1.8e-08  Score=84.52  Aligned_cols=117  Identities=18%  Similarity=0.152  Sum_probs=53.0

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCc--eeehHHHHHHHH---HcCCcchHHHHHHHHcCCCcChHHHHHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY---GLV--HIAAGDLLRAEI---AAGSENGKRAKEHMEKGQLVPDEIVVTMV  152 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l---g~~--~i~~d~l~~~~~---~~~~~~~~~i~~~~~~g~~~~~~~~~~~l  152 (303)
                      ...+.+|+|+|++||||||+++.|+..+   +..  +++.|.+.....   ..+...+.   .++. + .+....+...+
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~---~~~~-~-~~d~~~l~~~v   93 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWF---EYYY-L-QWDVEWLTHQL   93 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHH---HHHH-T-SSCHHHHHHHT
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCcc---CCCc-c-ccCHHHHHHHH
Confidence            3456899999999999999999999876   433  344554432211   11111111   1111 1 11112221221


Q ss_pred             HHHHcC---------------------CCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042          153 KERLSQ---------------------PDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR  208 (303)
Q Consensus       153 ~~~l~~---------------------~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R  208 (303)
                      ...+..                     ....+..+|+||.-....   .+.   ..+|.+|||++|.+++++|+.+|
T Consensus        94 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~---~~~d~~i~v~~~~~~~~~R~~~R  164 (201)
T 1rz3_A           94 FRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRK---EWR---PFFDFVVYLDCPREIRFARENDQ  164 (201)
T ss_dssp             GGGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTST---TTG---GGCSEEEEECCC-----------
T ss_pred             HHHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccH---HHH---hhcCEEEEEeCCHHHHHHHHhcC
Confidence            111100                     011245688888321100   011   13689999999999999999887

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.77  E-value=1.4e-08  Score=87.95  Aligned_cols=30  Identities=47%  Similarity=0.647  Sum_probs=26.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      ..+.+|+|+|+.||||||+++.|+..+|..
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            456799999999999999999999988865

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.77  E-value=1.9e-08  Score=83.22  Aligned_cols=120  Identities=21%  Similarity=0.297  Sum_probs=63.9

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCC--ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGL--VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ  158 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~--~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~  158 (303)
                      -.++.+|+|+|++||||||+++.|+..++.  .+++.+++.... ..+...+-..+ ...     +...+.+.+......
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~~~~~-~~~-----~~~~v~~~l~~~~~~   78 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDPWLPQ-SHQ-----QNRMIMQIAADVAGR   78 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCTTSSS-HHH-----HHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccCCccc-hhh-----hhHHHHHHHHHHHHH
Confidence            345679999999999999999999987644  467777664321 11100000000 000     011111111111000


Q ss_pred             CCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          159 PDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       159 ~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      ....+..+++|++.... ....+.... .+-.++++.++.+++++|+..|.
T Consensus        79 ~~~~~~~~~~~~~~~~~-~l~~~~~~~-~~~~~ls~~~~~~v~~~R~~~r~  127 (191)
T 1zp6_A           79 YAKEGYFVILDGVVRPD-WLPAFTALA-RPLHYIVLRTTAAEAIERCLDRG  127 (191)
T ss_dssp             HHHTSCEEEECSCCCTT-TTHHHHTTC-SCEEEEEEECCHHHHHHHHHTTC
T ss_pred             HhccCCeEEEeccCcHH-HHHHHHhcC-CCeEEEEecCCHHHHHHHHHhcC
Confidence            01113457788754321 122232212 23357999999999999999884

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=98.69  E-value=1.3e-07  Score=83.76  Aligned_cols=105  Identities=12%  Similarity=0.070  Sum_probs=64.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC---CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ  158 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg---~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~  158 (303)
                      ..+++|+|.|..||||+|++++|.+.++   +.++.+.          .+.+..+.      .        ..+......
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~----------~Pt~eE~~------~--------~yl~R~~~~  139 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT----------KPTETERG------Q--------WYFQRYVAT  139 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC----------SCCHHHHT------S--------CTTHHHHTT
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC----------CcChHHHh------c--------hHHHHHHHh
Confidence            5689999999999999999999999985   3333221          11121111      0        011223333


Q ss_pred             CCCCCCcEEEcCCC------------CCH-------HHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042          159 PDSQENGWLLDGYP------------RSL-------SQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRL  210 (303)
Q Consensus       159 ~~~~~~~~Vldg~p------------~~~-------~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~  210 (303)
                      ....|..+|.|.+-            ...       .++..|+.   ....|++.+||+++.++..+|+.+|..
T Consensus       140 LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~  213 (304)
T 3czq_A          140 FPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRH  213 (304)
T ss_dssp             CCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhc
Confidence            43446667777421            111       12222211   123799999999999999999987753

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=98.62  E-value=4.5e-07  Score=82.81  Aligned_cols=29  Identities=24%  Similarity=0.300  Sum_probs=23.9

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ..++++|+|+|+.||||||+++.|++.++
T Consensus        46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            45668999999999999999999999874

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.60  E-value=3e-08  Score=89.36  Aligned_cols=37  Identities=16%  Similarity=0.254  Sum_probs=33.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL  118 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l  118 (303)
                      .++++|+|+||+|||||||+..||+++|..+||+|.+
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            3456899999999999999999999999999998876

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=98.59  E-value=2.6e-07  Score=83.51  Aligned_cols=29  Identities=28%  Similarity=0.312  Sum_probs=25.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHH-HHHHHHhCC
Q 022042           82 VEPLKIMISGAPASGKGTQC-ELIKEKYGL  110 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla-~~La~~lg~  110 (303)
                      .++++|+|.|+.||||||++ +.|++.++.
T Consensus        10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~   39 (341)
T 1osn_A           10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAIT   39 (341)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            34579999999999999999 999998864

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=98.57  E-value=1.2e-06  Score=75.49  Aligned_cols=41  Identities=27%  Similarity=0.412  Sum_probs=36.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA  124 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~  124 (303)
                      |++|+|+|++||||||+++.|.+++|++++.+++.+++.+.
T Consensus         1 m~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~   41 (241)
T 1dek_A            1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA   41 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence            46899999999999999999999899999999887776554

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.54  E-value=8.5e-08  Score=92.37  Aligned_cols=38  Identities=11%  Similarity=0.230  Sum_probs=31.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC------CceeehHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG------LVHIAAGDLL  119 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg------~~~i~~d~l~  119 (303)
                      .++.+|+|+|++||||||+++.|+..++      +.+++.|++.
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~  410 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR  410 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence            4678999999999999999999999884      3357766654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.54  E-value=1.2e-07  Score=84.79  Aligned_cols=37  Identities=24%  Similarity=0.355  Sum_probs=30.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CceeehHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG-------LVHIAAGDL  118 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg-------~~~i~~d~l  118 (303)
                      .++.+|+|+|++||||||+++.|+..++       +.++++|..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            5668999999999999999999999876       456666654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.53  E-value=1.2e-05  Score=68.27  Aligned_cols=30  Identities=10%  Similarity=0.152  Sum_probs=24.5

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ..+.+.+++|+||+||||||+.+.|+..+.
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            345667999999999999999999998764

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=98.53  E-value=1e-06  Score=79.32  Aligned_cols=28  Identities=25%  Similarity=0.318  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      .++++|+|+|+.||||||+++.|++.++
T Consensus         2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            2 PTLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3467999999999999999999999874

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.50  E-value=3.8e-07  Score=81.98  Aligned_cols=38  Identities=26%  Similarity=0.348  Sum_probs=31.0

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CceeehHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYG-------LVHIAAGDL  118 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg-------~~~i~~d~l  118 (303)
                      ..+|.+|+|+|++||||||+++.|+..++       ...++.|..
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f  133 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF  133 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence            34678999999999999999999998875       345777654

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.47  E-value=1.2e-06  Score=71.91  Aligned_cols=26  Identities=15%  Similarity=0.162  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      +.+|+|+||+||||||+++.|+..+.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            45899999999999999999998764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.44  E-value=3.2e-07  Score=77.20  Aligned_cols=37  Identities=22%  Similarity=0.285  Sum_probs=30.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDL  118 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l  118 (303)
                      ..+.+|+|.|++||||||+++.|+..+.     ..+++.|..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~   61 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF   61 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence            4567999999999999999999999874     456666543

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.42  E-value=1.1e-06  Score=83.32  Aligned_cols=170  Identities=12%  Similarity=0.097  Sum_probs=97.2

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHc
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS  157 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg---~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~  157 (303)
                      ...+++|+|.|..||||+|+.++|.+.++   +.++.+.          .+.....      +.        ..+.....
T Consensus       297 ~~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~----------~Pt~~E~------~~--------~yl~R~~~  352 (500)
T 3czp_A          297 RQHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIA----------APTEEER------AQ--------PYLWRFWR  352 (500)
T ss_dssp             GGCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECC----------SCCHHHH------TS--------CTTHHHHT
T ss_pred             CCCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhh------cc--------hHHHHHHH
Confidence            35788999999999999999999999884   4444321          1111111      10        11133444


Q ss_pred             CCCCCCCcEEEcCC--CC----------CHH-------HHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042          158 QPDSQENGWLLDGY--PR----------SLS-------QATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTG  215 (303)
Q Consensus       158 ~~~~~~~~~Vldg~--p~----------~~~-------~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g  215 (303)
                      .....|..+|.|.+  .+          ...       ++..|+.   ....+++.+||+++.++..+|+.+|..++.+.
T Consensus       353 ~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~  432 (500)
T 3czp_A          353 HIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKR  432 (500)
T ss_dssp             TCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTT
T ss_pred             hCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence            45555666777752  11          111       2222221   23358899999999999999999886544321


Q ss_pred             ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh---cceEEEcCCC---CHHHHHHHHHHHHHH
Q 022042          216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE---DVTVEVNGSV---NKEDVFAQIDVALTN  289 (303)
Q Consensus       216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~---~~~~~Id~~~---s~eev~~~I~~~l~~  289 (303)
                      --    ++|              .|..  -.+++..|...++..+..-.   ..+++|+++.   ....|.+.|.+.|..
T Consensus       433 Wk----~s~--------------~D~~--~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~  492 (500)
T 3czp_A          433 YK----ITE--------------EDWR--NRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEA  492 (500)
T ss_dssp             SC----CCS--------------STTT--GGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CC----CCH--------------HHHH--HHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHH
Confidence            00    000              0100  11223444444444333322   2578899886   457777888888887


Q ss_pred             HHHhh
Q 022042          290 LLEQR  294 (303)
Q Consensus       290 ~l~~~  294 (303)
                      .+.+.
T Consensus       493 ~l~~~  497 (500)
T 3czp_A          493 AYKKD  497 (500)
T ss_dssp             HHHHC
T ss_pred             HHhcc
Confidence            77553

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.41  E-value=2.3e-06  Score=71.36  Aligned_cols=69  Identities=22%  Similarity=0.325  Sum_probs=42.4

Q ss_pred             CCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHh-hcceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042          222 YSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY-EDVTVEVNGSVNKEDVFAQIDVALTNLLEQ  293 (303)
Q Consensus       222 ~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~-~~~~~~Id~~~s~eev~~~I~~~l~~~l~~  293 (303)
                      ..+|+...+.+++..+..+.++.+++++........ +. ++ ...-++|.++ ++++.++++.+++......
T Consensus       122 l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~-~a-~~~~~~D~iivnd-~le~a~~~l~~ii~~~~~~  191 (198)
T 1lvg_A          122 VQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDME-SS-KEPGLFDLVIIND-DLDKAYATLKQALSEEIKK  191 (198)
T ss_dssp             EECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-GG-GSTTTCSEEEECS-SHHHHHHHHHHHTHHHHHH
T ss_pred             EeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-Hh-hccCCceEEEECC-CHHHHHHHHHHHHHHHhhh
Confidence            445555566666666666778888888877655421 11 01 1112233343 7999999999999776543

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.38  E-value=2.7e-06  Score=80.67  Aligned_cols=170  Identities=15%  Similarity=0.043  Sum_probs=89.6

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCC---ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHc
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGL---VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS  157 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~---~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~  157 (303)
                      ...+++|+|.|..||||+|+++.|.+.++-   .++.+.          .+.....      +..        .+.....
T Consensus        40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~----------~Pt~~E~------~~~--------yl~R~~~   95 (500)
T 3czp_A           40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFL----------RPSDEEL------ERP--------PQWRFWR   95 (500)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECS----------SCCHHHH------TSC--------TTHHHHH
T ss_pred             CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhc------cCC--------hhhhHHH
Confidence            356889999999999999999999999853   333221          0111100      000        0111222


Q ss_pred             CCCCCCCcEEEcCC-----------C-CC-------HHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042          158 QPDSQENGWLLDGY-----------P-RS-------LSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTG  215 (303)
Q Consensus       158 ~~~~~~~~~Vldg~-----------p-~~-------~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g  215 (303)
                      .....|..+|.|++           . ..       ..++..|+.   ....+++.+||+++.++..+|+.+|..++.+.
T Consensus        96 ~lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~  175 (500)
T 3czp_A           96 RLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQHS  175 (500)
T ss_dssp             HCCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC----------
T ss_pred             hCCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence            23333555666641           0 11       122222222   34568899999999999999999986544220


Q ss_pred             ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHh---hcceEEEcCCC---CHHHHHHHHHHHHHH
Q 022042          216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY---EDVTVEVNGSV---NKEDVFAQIDVALTN  289 (303)
Q Consensus       216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~---~~~~~~Id~~~---s~eev~~~I~~~l~~  289 (303)
                      =-    +              ...|..  -.+++..|...++..+..-   ...+++|+++.   ....+.+.|.+.|..
T Consensus       176 Wk----~--------------s~~D~~--~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~~  235 (500)
T 3czp_A          176 WK----L--------------SPLDWK--QSEVYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQA  235 (500)
T ss_dssp             ---------------------CSSCTT--SHHHHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred             CC----C--------------CHHHHH--HHHhHHHHHHHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHHH
Confidence            00    0              001111  1123444444444444322   12578899986   457788888888888


Q ss_pred             HHHhh
Q 022042          290 LLEQR  294 (303)
Q Consensus       290 ~l~~~  294 (303)
                      .+...
T Consensus       236 ~l~~~  240 (500)
T 3czp_A          236 ALATK  240 (500)
T ss_dssp             HHHC-
T ss_pred             HHHhc
Confidence            77643

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.36  E-value=1e-06  Score=83.37  Aligned_cols=119  Identities=14%  Similarity=0.178  Sum_probs=64.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHHHHcCCcchHHHHHHHHcCCC----cChHHHHHHH-
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL----VPDEIVVTMV-  152 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~----~~~~~~~~~l-  152 (303)
                      .+++|+++|.|||||||+++.|++.++     ...++.+++.+.. .......    +++.....    .........+ 
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~-~g~~~~~----~ifd~~g~~~~r~re~~~~~~l~  112 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDM-VKTYKSF----EFFLPDNEEGLKIRKQCALAALN  112 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HCSCCCG----GGGCTTCHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhh-ccCCCcc----cccCCCCHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999874     3456677755443 2210000    01111100    0001111111 


Q ss_pred             --HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCC-CCcEEEEEE---cCHHHHHHHHhcC
Q 022042          153 --KERLSQPDSQENGWLLDGYPRSLSQATALKKYGF-QPDLFILLE---VPEDTLVERVVGR  208 (303)
Q Consensus       153 --~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~-~pd~vI~L~---~~~e~~~~Rl~~R  208 (303)
                        ...+..  ..+..+|+|.........+.|.+... ....++||+   .+++.+.+|+..+
T Consensus       113 ~~~~~l~~--~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~  172 (469)
T 1bif_A          113 DVRKFLSE--EGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQV  172 (469)
T ss_dssp             HHHHHHHT--TCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHH
T ss_pred             HHHHHHHh--CCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHh
Confidence              222322  22567999987666655555432110 012466777   5578888888654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.22  E-value=5.2e-06  Score=69.26  Aligned_cols=27  Identities=11%  Similarity=0.180  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ++.+|+|+||+|||||||++.|.+.+.
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            456899999999999999999998875

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.07  E-value=3.4e-05  Score=62.63  Aligned_cols=111  Identities=18%  Similarity=0.197  Sum_probs=59.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      .+.+++|.|++||||||+++.+.  .|...++.|.+ +..+..... ...+...       ..+.........+..    
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~-~g~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~----   72 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFC-RGLMSDDEN-DQTVTGA-------AFDVLHYIVSKRLQL----   72 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHH-HHHHCSSTT-CGGGHHH-------HHHHHHHHHHHHHHT----
T ss_pred             CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHH-HHHhcCccc-chhhHHH-------HHHHHHHHHHHHHhC----
Confidence            45689999999999999999864  25566665543 332222110 0000000       001111112222222    


Q ss_pred             CCcEEEcCCCCCH---HHHHHHHH-hCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          163 ENGWLLDGYPRSL---SQATALKK-YGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       163 ~~~~Vldg~p~~~---~~~~~l~~-~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      +...++|......   .|...+.. ....| .+++||-|...+-.|...|.
T Consensus        73 g~~~~~~~~~~~s~g~~qrv~iAral~~~p-~~lllDEPt~~Ld~~~~~R~  122 (171)
T 4gp7_A           73 GKLTVVDATNVQESARKPLIEMAKDYHCFP-VAVVFNLPEKVCQERNKNRT  122 (171)
T ss_dssp             TCCEEEESCCCSHHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHTCS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHHcCCcE-EEEEEeCCHHHHHHHHhccc
Confidence            3456677643322   22222333 33344 68899999999999988774

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.02  E-value=2.2e-06  Score=76.89  Aligned_cols=34  Identities=18%  Similarity=0.214  Sum_probs=31.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL  118 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l  118 (303)
                      ++|+|+||+||||||++..|++++|..+|++|.+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~   39 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA   39 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence            5899999999999999999999999999998765

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=98.00  E-value=0.00014  Score=63.55  Aligned_cols=150  Identities=11%  Similarity=0.065  Sum_probs=85.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC---ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGL---VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP  159 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~---~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~  159 (303)
                      .+.+|+|.|..||||+++.++|.+.++-   .++.+.                        .+...+.....+.......
T Consensus        74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~------------------------~Pt~eE~~~~ylwR~~~~l  129 (289)
T 3rhf_A           74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFK------------------------APTDEEKSHDFLWRIEKQV  129 (289)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECC------------------------SCCHHHHTSCTTHHHHTTC
T ss_pred             CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECC------------------------CCChhhhcCCHHHHHHHhC
Confidence            5789999999999999999999999853   333221                        0011111111223344455


Q ss_pred             CCCCCcEEEcC--CCC----------C-------HHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCce
Q 022042          160 DSQENGWLLDG--YPR----------S-------LSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKI  217 (303)
Q Consensus       160 ~~~~~~~Vldg--~p~----------~-------~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~  217 (303)
                      ...|...|+|+  |.+          +       ..++..|++   ......+-+||+++.++..+|+.+|..++.+   
T Consensus       130 P~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k---  206 (289)
T 3rhf_A          130 PAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSK---  206 (289)
T ss_dssp             CCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGG---
T ss_pred             CCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcc---
Confidence            55566677774  111          1       122222333   2233456789999999999999988644321   


Q ss_pred             ecccCCCCCchHHHhhhccCCCCcHHHH--HHHHHHHHHHHHHHHHHhh---cceEEEcCCCCHHH
Q 022042          218 YHVKYSPPETDEIAARLTKRFDDTEEKV--KLRLKTHHHNVEAVLSLYE---DVTVEVNGSVNKED  278 (303)
Q Consensus       218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~--~~r~~~~~~~~~~~~~~~~---~~~~~Id~~~s~ee  278 (303)
                                         +..-++..+  .+++..|...++..+..-.   ..+++|+++.-.-.
T Consensus       207 -------------------~WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~a  253 (289)
T 3rhf_A          207 -------------------HWKYSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYA  253 (289)
T ss_dssp             -------------------GGGCCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHH
T ss_pred             -------------------cccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHH
Confidence                               111112222  2235666665555554432   26888998754333

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.98  E-value=3.7e-06  Score=75.89  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=31.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL  118 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l  118 (303)
                      ++|+|+||+||||||+|..|++.++..+|++|++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~   41 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM   41 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence            5899999999999999999999999999998876

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.94  E-value=5.1e-06  Score=73.89  Aligned_cols=36  Identities=22%  Similarity=0.274  Sum_probs=31.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD  117 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~  117 (303)
                      ..+.+|+|+||+||||||++..|+++++..+|+.|.
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds   43 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDS   43 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence            345789999999999999999999999988888764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.94  E-value=3.8e-06  Score=74.88  Aligned_cols=36  Identities=17%  Similarity=0.256  Sum_probs=32.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL  118 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l  118 (303)
                      ++++|+|+||+||||||++..|+++++..+|+.|.+
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            456899999999999999999999999888887754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.87  E-value=0.00036  Score=58.80  Aligned_cols=66  Identities=20%  Similarity=0.288  Sum_probs=41.6

Q ss_pred             cCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHH-HhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          221 KYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLS-LYEDVTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       221 ~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~-~~~~~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                      ...+|+...+.+++..+..+.++.+.+++........ +.. .+.+.+  +.+ .+.++.++.+.+++...
T Consensus       142 ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~-~~h~~~~d~i--iv~-~~~~ea~~~~~~ii~~~  208 (218)
T 1z6g_A          142 FIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELH-EANLLNFNLS--IIN-DDLTLTYQQLKNYLLNS  208 (218)
T ss_dssp             EEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH-HHTTSCCSEE--EEC-SSHHHHHHHHHHHHHHH
T ss_pred             EEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-hhcccCCCEE--EEC-CCHHHHHHHHHHHHHHH
Confidence            3445666666777777767778888888887765544 211 111222  222 37889999888888764

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=97.77  E-value=0.00024  Score=62.89  Aligned_cols=24  Identities=17%  Similarity=0.202  Sum_probs=19.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      .+..|+|+||   ||+|+.+.|.+.+.
T Consensus       104 ~~r~ivl~GP---gK~tl~~~L~~~~~  127 (295)
T 1kjw_A          104 YARPIIILGP---TKDRANDDLLSEFP  127 (295)
T ss_dssp             SCCCEEEEST---THHHHHHHHHHHCT
T ss_pred             CCCEEEEECC---CHHHHHHHHHhhCc
Confidence            4467889998   89999999998763

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.62  E-value=3.3e-05  Score=68.36  Aligned_cols=36  Identities=44%  Similarity=0.692  Sum_probs=29.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCcee--ehHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHI--AAGDL  118 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i--~~d~l  118 (303)
                      .|..++|.||||+|||++|+.|++.+|..++  +..++
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l   72 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL   72 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence            4567889999999999999999999986554  44444

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.61  E-value=2.9e-05  Score=71.52  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGD  117 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~  117 (303)
                      ++|+|+||+||||||++..|+++++..+|++|.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            578999999999999999999999988888775

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.55  E-value=3.8e-05  Score=73.11  Aligned_cols=36  Identities=3%  Similarity=0.040  Sum_probs=30.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCC-------ceeehHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGL-------VHIAAGD  117 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~-------~~i~~d~  117 (303)
                      +.+++|+|+|.+||||||+++.|+++|+.       .+++.|+
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            45689999999999999999999999986       4666554

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.46  E-value=0.00016  Score=58.86  Aligned_cols=39  Identities=21%  Similarity=0.227  Sum_probs=31.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh----C--CceeehHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY----G--LVHIAAGDLLRA  121 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l----g--~~~i~~d~l~~~  121 (303)
                      .+..++|.|++|+||||+++.|+..+    |  +.+++..+++..
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~   81 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR   81 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            35689999999999999999998876    4  356777766654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.41  E-value=0.00011  Score=65.11  Aligned_cols=39  Identities=26%  Similarity=0.275  Sum_probs=31.3

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------Ccee-ehHHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYG-------LVHI-AAGDLL  119 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg-------~~~i-~~d~l~  119 (303)
                      ..++.+|+|.|++||||||+++.|+..++       ...+ +.|+++
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~   74 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   74 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence            34678999999999999999999999874       3445 777654

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.40  E-value=0.00011  Score=63.25  Aligned_cols=32  Identities=19%  Similarity=0.376  Sum_probs=27.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      +.-|+|.|+||+||||+++.|+..++.+++.+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i   76 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI   76 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence            34588999999999999999999998666543

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.40  E-value=0.00011  Score=63.14  Aligned_cols=31  Identities=19%  Similarity=0.369  Sum_probs=27.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      +.-|+|.|+||+|||++|+.|++.++..++.
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~   69 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLA   69 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4468899999999999999999999876654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.40  E-value=8.9e-05  Score=60.69  Aligned_cols=26  Identities=42%  Similarity=0.686  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      ++++|+|++||||||+.+.|+..+++
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i   26 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            47899999999999999999998864

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.39  E-value=9e-05  Score=61.63  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=29.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD  117 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~  117 (303)
                      .+..|+|+|++|+||||+|..|+++.+ .+|+.|.
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs   66 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR   66 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence            456899999999999999999999866 7777664

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.38  E-value=0.00011  Score=68.53  Aligned_cols=33  Identities=15%  Similarity=0.278  Sum_probs=28.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      .|.-|++.||||+|||++|+.+|.++|..++.+
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v  246 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQTNATFLKL  246 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            356799999999999999999999999877654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.00012  Score=68.09  Aligned_cols=32  Identities=19%  Similarity=0.388  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      |.=|++.||||+|||++|+.+|..+|..++.+
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v  237 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV  237 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence            44599999999999999999999999877654

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.34  E-value=0.00096  Score=66.32  Aligned_cols=23  Identities=17%  Similarity=0.250  Sum_probs=19.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      +..|+|+||   ||+|+.+.|.+.+.
T Consensus       531 ~r~vvl~GP---~K~tl~~~L~~~~~  553 (721)
T 2xkx_A          531 ARPIIILGP---TKDRANDDLLSEFP  553 (721)
T ss_pred             CCEEEEECC---CHHHHHHHHHHhCc
Confidence            467889999   49999999998773

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.33  E-value=0.00015  Score=67.61  Aligned_cols=32  Identities=22%  Similarity=0.438  Sum_probs=28.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      |.=|++.||||+|||++|+.||..+|..++.+
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v  246 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAATIGANFIFS  246 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            46799999999999999999999999877654

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.33  E-value=4.4e-05  Score=69.15  Aligned_cols=29  Identities=24%  Similarity=0.326  Sum_probs=26.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCce
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVH  112 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~  112 (303)
                      .+.|+|.|++||||||+++.|++.+++.+
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            35799999999999999999999998776

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.33  E-value=0.00014  Score=64.49  Aligned_cols=38  Identities=21%  Similarity=0.337  Sum_probs=30.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceee--hHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA--AGDLLR  120 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~--~d~l~~  120 (303)
                      .+..|+|.|+||+||||+|+.|+..++..++.  ..++..
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~   87 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT   87 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence            34578999999999999999999999876654  445543

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.30  E-value=0.00015  Score=66.87  Aligned_cols=32  Identities=19%  Similarity=0.366  Sum_probs=28.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      |.=|++.||||+|||.+|+.+|.++|..++.+
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v  213 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRV  213 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence            45699999999999999999999999877654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.29  E-value=0.00018  Score=62.84  Aligned_cols=32  Identities=22%  Similarity=0.405  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      .+.-++|.|+||+||||+++.|++.++..++.
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~   81 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETNATFIR   81 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            34568999999999999999999999876654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.29  E-value=0.00021  Score=62.15  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=29.6

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      ...+..++|.|+||+|||++|+.|++.++.+++.+
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i   95 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   95 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            34456899999999999999999999998876644

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.28  E-value=0.00014  Score=59.67  Aligned_cols=25  Identities=24%  Similarity=0.396  Sum_probs=22.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCce
Q 022042           87 IMISGAPASGKGTQCELIKEKYGLVH  112 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~lg~~~  112 (303)
                      |+|+|++||||||+|+.|+.. |.+.
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~   26 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQV   26 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCe
Confidence            789999999999999999987 6543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.28  E-value=0.00019  Score=63.14  Aligned_cols=31  Identities=13%  Similarity=0.313  Sum_probs=27.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      +..|+|.|+||+||||+|+.|++.++..++.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~   84 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECSATFLN   84 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence            4578999999999999999999999876654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.27  E-value=0.00015  Score=63.45  Aligned_cols=28  Identities=25%  Similarity=0.566  Sum_probs=24.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           87 IMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      ++|.|||||||||+++.|+..++...+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i~   74 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFIS   74 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence            8899999999999999999998765443

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.23  E-value=0.00021  Score=58.00  Aligned_cols=26  Identities=23%  Similarity=0.022  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+++|+|+|++||||||++..|+..+
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence            45689999999999999999999875

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.22  E-value=0.0002  Score=65.15  Aligned_cols=32  Identities=22%  Similarity=0.272  Sum_probs=27.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      +..|+|.||||+|||++|+.|++.++.+++.+
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~   82 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMA   82 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence            34688999999999999999999998777654

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.21  E-value=0.00018  Score=67.19  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=28.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAG  116 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d  116 (303)
                      +..|+|.||||+||||+|+.|++.++..++.++
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~   82 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   82 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence            456889999999999999999999998776654

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.00021  Score=66.84  Aligned_cols=33  Identities=21%  Similarity=0.400  Sum_probs=29.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      .|.=|+|.||||+|||++|+.||.+++..++.+
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v  274 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRV  274 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence            456799999999999999999999999877654

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.19  E-value=0.00022  Score=66.13  Aligned_cols=32  Identities=19%  Similarity=0.413  Sum_probs=28.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      |.=|++.||||+|||.+|+.||.+++..++.+
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v  247 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRI  247 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence            45699999999999999999999999877654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.17  E-value=0.00027  Score=63.22  Aligned_cols=32  Identities=16%  Similarity=0.317  Sum_probs=27.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      +.-|+|.|+||+|||++|+.+++.++..++.+
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v   82 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV   82 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence            34689999999999999999999998766543

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.17  E-value=0.00033  Score=56.55  Aligned_cols=26  Identities=19%  Similarity=0.303  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+..++|.|++|+||||+++.+++.+
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34568899999999999999999986

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.15  E-value=0.0003  Score=62.79  Aligned_cols=28  Identities=25%  Similarity=0.396  Sum_probs=25.0

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...+.+|+|.|++||||||+++.|+..+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            3567899999999999999999999876

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.14  E-value=0.00027  Score=62.20  Aligned_cols=31  Identities=19%  Similarity=0.280  Sum_probs=26.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      +..++|.|+||+|||++|+.|++.++..++.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~   80 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIK   80 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4568899999999999999999999876553

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.11  E-value=0.00029  Score=56.82  Aligned_cols=26  Identities=23%  Similarity=0.257  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+..++|.|++|+||||+++.+++.+
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34578899999999999999999987

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.11  E-value=0.00063  Score=56.14  Aligned_cols=37  Identities=16%  Similarity=0.256  Sum_probs=29.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CC--ceeehHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY---GL--VHIAAGDLLRA  121 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l---g~--~~i~~d~l~~~  121 (303)
                      ..|+|.|++|+||||+++.|+..+   +.  .+++..+++..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~   96 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE   96 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence            678999999999999999999877   33  34666666544

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.11  E-value=0.00029  Score=60.52  Aligned_cols=29  Identities=17%  Similarity=0.363  Sum_probs=24.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      -++|.|++||||||+++.|+..++...+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~   79 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEARVPFIT   79 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            38899999999999999999988655443

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.09  E-value=0.00032  Score=64.08  Aligned_cols=32  Identities=16%  Similarity=0.267  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      +..|+|.|+||+|||++|+.|++.++.+++.+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~  103 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS  103 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            34688999999999999999999998766544

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.06  E-value=0.00037  Score=63.34  Aligned_cols=31  Identities=16%  Similarity=0.326  Sum_probs=26.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      .-|+|.|+||+|||++|+.|++.++..++.+
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v  115 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATEANSTFFSV  115 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            4588999999999999999999998766544

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.05  E-value=0.00043  Score=62.28  Aligned_cols=29  Identities=21%  Similarity=0.330  Sum_probs=25.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCce
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVH  112 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~  112 (303)
                      +..++|.||+|+||||+++.|+..++..+
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            35789999999999999999999987643

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.04  E-value=0.00041  Score=62.14  Aligned_cols=29  Identities=17%  Similarity=0.323  Sum_probs=25.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh-CCcee
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY-GLVHI  113 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l-g~~~i  113 (303)
                      .-|+|.||||+|||++|+.+++.+ +..++
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~   75 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATEANNSTFF   75 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred             ceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence            468899999999999999999998 65544

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.03  E-value=0.0004  Score=57.90  Aligned_cols=27  Identities=26%  Similarity=0.379  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      .+.+++|.|++||||||+++.|+..+.
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            345899999999999999999998764

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.03  E-value=0.0037  Score=55.11  Aligned_cols=23  Identities=17%  Similarity=0.200  Sum_probs=18.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ...|+|+||   ||+|+.+.|.+.+.
T Consensus       100 ~RpvVl~Gp---~K~tl~~~Ll~~~p  122 (292)
T 3tvt_A          100 TRPVIILGP---LKDRINDDLISEYP  122 (292)
T ss_dssp             CCCEEEEST---THHHHHHHHHHHCT
T ss_pred             CCeEEEeCC---CHHHHHHHHHHhCh
Confidence            345788888   69999999999875

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.01  E-value=0.00017  Score=62.53  Aligned_cols=30  Identities=13%  Similarity=0.321  Sum_probs=25.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      .-|+|.|+||+|||++|+.|++.++.+++.
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~   74 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFS   74 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            347799999999999999999999866554

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.01  E-value=0.00054  Score=62.78  Aligned_cols=34  Identities=21%  Similarity=0.149  Sum_probs=28.9

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      -..+.+|+|.|++||||||+++.|+..++..++.
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            3456799999999999999999999988766654

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.00  E-value=0.00051  Score=62.38  Aligned_cols=32  Identities=25%  Similarity=0.430  Sum_probs=27.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      .+.-|+|.|+||+|||++|+.|++.++..++.
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~  147 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFS  147 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence            45679999999999999999999999876654

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.98  E-value=0.00042  Score=61.12  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +..|+|.|+||+|||++|+.|++.+
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999999987

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.96  E-value=0.00057  Score=55.69  Aligned_cols=25  Identities=12%  Similarity=0.049  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +.+|+|+|++||||||+++.|...+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            4689999999999999999998865

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.95  E-value=0.00033  Score=55.52  Aligned_cols=26  Identities=15%  Similarity=0.109  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ....++|.|++|+||||+++.|+..+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            44578899999999999999999877

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.95  E-value=0.00048  Score=60.10  Aligned_cols=29  Identities=17%  Similarity=0.363  Sum_probs=24.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      -|+|.|++||||||+++.|+..++...+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~  103 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEARVPFIT  103 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEECCCcChHHHHHHHHHHHcCCCEEE
Confidence            38999999999999999999988655443

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.92  E-value=0.00058  Score=57.48  Aligned_cols=27  Identities=15%  Similarity=0.092  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      .+..++|.|++|+||||+++.+++.++
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999998764

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.91  E-value=0.00066  Score=60.79  Aligned_cols=32  Identities=22%  Similarity=0.210  Sum_probs=27.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      +..|+|.|++|+|||++|+.|++.++..++..
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~   86 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSANIKTT   86 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            34689999999999999999999998776543

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.90  E-value=0.00058  Score=64.14  Aligned_cols=31  Identities=19%  Similarity=0.415  Sum_probs=26.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC--Cceee
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYG--LVHIA  114 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg--~~~i~  114 (303)
                      +.-|+|.||||+|||++|+.|++.+|  +.++.
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~   95 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCP   95 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEE
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEE
Confidence            35789999999999999999999998  65554

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.88  E-value=0.00063  Score=64.95  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      +..++|+|+||+||||+|+.|++.+|+.++.+
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i  108 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ  108 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            35789999999999999999999999877654

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=96.88  E-value=0.013  Score=51.83  Aligned_cols=90  Identities=13%  Similarity=0.165  Sum_probs=46.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      .-|+|+||   ||+|+.+.|.+.+.-.+-..-. +          .+    -...+..++-..+...+.    +    ++
T Consensus       146 RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~-~----------~r----~i~~~~fis~~~V~~vl~----~----Gk  199 (308)
T 3kfv_A          146 RPVVILGP---VADIAMQKLTAEMPDQFEIAET-V----------SR----TDSPSKIIKLDTVRVIAE----K----DK  199 (308)
T ss_dssp             CCEEEEST---THHHHHHHHHHHCTTTEEECCC-C----------------------CCCHHHHHHHHH----T----TC
T ss_pred             CeEEEeCc---cHHHHHHHHHHhCccccccccc-c----------cc----cccCCCeecHHHHHHHHH----C----CC
Confidence            44788899   7999999999987432211100 0          00    124455555444444333    2    67


Q ss_pred             cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcC-HHHHHHH
Q 022042          165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVP-EDTLVER  204 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~-~e~~~~R  204 (303)
                      .+|||=-+   .-+..+......| ++|||..| .+++.+|
T Consensus       200 ~~ILDId~---QGa~~lk~~~~~p-i~IFI~PPS~eeL~~r  236 (308)
T 3kfv_A          200 HALLDVTP---SAIERLNYVQYYP-IVVFFIPESRPALKAL  236 (308)
T ss_dssp             EEEECCCH---HHHHHHHHTTCCC-EEEEEEESCHHHHHHH
T ss_pred             cEEEEECH---HHHHHHHhcCCCC-EEEEEeCCCHHHHHHH
Confidence            78888433   2233344444456 66666655 4555554

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.87  E-value=0.0006  Score=56.95  Aligned_cols=29  Identities=14%  Similarity=-0.001  Sum_probs=25.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      ..++|.||||+||||+|..|++.++..++
T Consensus        59 n~ili~GPPGtGKTt~a~ala~~l~g~i~   87 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI   87 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence            36999999999999999999998865544

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.87  E-value=0.001  Score=59.23  Aligned_cols=37  Identities=22%  Similarity=0.263  Sum_probs=29.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh---CC--ceeehHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY---GL--VHIAAGDLLR  120 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l---g~--~~i~~d~l~~  120 (303)
                      +..++|.|++|+||||+++.|++.+   +.  .+++..++..
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~   78 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ   78 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
Confidence            4568899999999999999999987   54  4566666543

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.86  E-value=0.00066  Score=62.31  Aligned_cols=32  Identities=13%  Similarity=0.278  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      +.-|+|.|+||+|||++|+.|++.++..++.+
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v  179 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI  179 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence            46799999999999999999999998876644

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.85  E-value=0.00089  Score=53.58  Aligned_cols=27  Identities=15%  Similarity=0.231  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ....+++|.|+.||||||+.+.|+..+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            456799999999999999999999876

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.85  E-value=0.00064  Score=53.33  Aligned_cols=24  Identities=21%  Similarity=0.418  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .-|+|.|++|+|||++|+.|++..
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhC
Confidence            457899999999999999998864

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.81  E-value=0.00083  Score=63.41  Aligned_cols=31  Identities=16%  Similarity=0.303  Sum_probs=26.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      .-|+|.||||+||||+++.|+..++.+++.+
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~i   80 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEANVPFFHI   80 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence            4588999999999999999999998776543

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=96.78  E-value=0.00085  Score=55.87  Aligned_cols=26  Identities=23%  Similarity=0.310  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .-||+++|+|+||||||++|..+...
T Consensus         3 ~~~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            3 AMAEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            34679999999999999998876443

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.77  E-value=0.00038  Score=56.55  Aligned_cols=24  Identities=29%  Similarity=0.286  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+|+|+|++||||||+++.|...|
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999999876

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.75  E-value=0.00069  Score=67.81  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=28.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      .|.-|+|.||||+|||++|+.+|.++|..++.+
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v  269 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI  269 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence            345799999999999999999999999877654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.75  E-value=0.00091  Score=55.88  Aligned_cols=27  Identities=19%  Similarity=0.277  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      +..++|.|++|+||||+++.+++.++.
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            347899999999999999999998743

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.69  E-value=0.0012  Score=61.79  Aligned_cols=33  Identities=21%  Similarity=0.231  Sum_probs=28.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      +...++|.|+||+||||+++.|++.++..++.+
T Consensus        49 ~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l   81 (447)
T 3pvs_A           49 HLHSMILWGPPGTGKTTLAEVIARYANADVERI   81 (447)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            345789999999999999999999998766544

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=96.69  E-value=0.0062  Score=57.17  Aligned_cols=95  Identities=16%  Similarity=0.137  Sum_probs=48.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      .+..|+|+||+|+|   ++++|.+.+.-.+.+.-  .|  ...+...|.       .....+-..    +.+.+.+    
T Consensus       223 ~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~~--TR--pR~gE~dG~-------~Y~FTs~~~----V~~vl~~----  280 (468)
T 3shw_A          223 FLRPVTIFGPIADV---AREKLAREEPDIYQIAK--SE--PRDAGTDQR-------SSGIIRLHT----IKQIIDQ----  280 (468)
T ss_dssp             SCCCEEEESTTHHH---HHHHHHHHCTTTEEECC--CB--C-----------------CBCCHHH----HHHHHTT----
T ss_pred             CCCEEEEECCCHHH---HHHHHHHhCCCceeeec--CC--CCCcccccc-------cCCcccHHH----HHHHHHC----
Confidence            45678999999999   99999888753333321  11  111111111       112233222    3333333    


Q ss_pred             CCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHH
Q 022042          163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVE  203 (303)
Q Consensus       163 ~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~  203 (303)
                      ++.+|||=-+   .-++.+......| ++|||..|--..++
T Consensus       281 Gk~~iLdId~---qg~~~l~~~~~~p-~~IFI~PPS~e~L~  317 (468)
T 3shw_A          281 DKHALLDVTP---NAVDRLNYAQWYP-IVVFLNPDSKQGVK  317 (468)
T ss_dssp             TCEEEECCCH---HHHHHHHHTTCCC-EEEEEECSCHHHHH
T ss_pred             CCeEEEEeCH---HHHHHHHhcCCCC-EEEEEeCcCHHHHH
Confidence            6778888433   3333444444455 67777765443333

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.68  E-value=0.00095  Score=55.95  Aligned_cols=26  Identities=15%  Similarity=0.058  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|++||||||+++.|+..+
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998743

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.67  E-value=0.001  Score=62.34  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=27.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh-CCce--eehHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY-GLVH--IAAGDLL  119 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l-g~~~--i~~d~l~  119 (303)
                      +.-|+|.||||+|||++|+.|+..+ +..+  ++..+++
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~  205 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV  205 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence            3578999999999999999999998 6544  4444444

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.67  E-value=0.0013  Score=57.04  Aligned_cols=27  Identities=22%  Similarity=0.263  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ....+++|+|++||||||+.+.|+..+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            445689999999999999999998865

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.65  E-value=0.0013  Score=58.51  Aligned_cols=26  Identities=19%  Similarity=0.319  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ++.+|+|.|+.||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            45699999999999999999999876

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.64  E-value=0.0012  Score=58.61  Aligned_cols=29  Identities=21%  Similarity=0.370  Sum_probs=25.3

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      -++..+++|.|++||||||+++.|+.-+.
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~  151 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLG  151 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence            35567999999999999999999998773

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.64  E-value=0.0011  Score=54.76  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +|+|.|++||||||+.+.|+..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            68899999999999999999876

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.63  E-value=0.0015  Score=58.76  Aligned_cols=27  Identities=30%  Similarity=0.340  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .++.+|+|.|+.||||||+++.|+..+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999876

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.63  E-value=0.0011  Score=54.61  Aligned_cols=23  Identities=22%  Similarity=0.510  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .++|.|++|+|||++++.+++.+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999999876

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.62  E-value=0.0014  Score=63.01  Aligned_cols=31  Identities=19%  Similarity=0.365  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      .+..++|.||||+||||+++.|+..++..++
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~  137 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV  137 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence            4568999999999999999999999876544

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.61  E-value=0.0009  Score=59.83  Aligned_cols=28  Identities=14%  Similarity=0.064  Sum_probs=25.3

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...+..++|.|+||+|||++++.+++.+
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4567789999999999999999999988

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.60  E-value=0.0012  Score=58.59  Aligned_cols=30  Identities=23%  Similarity=0.372  Sum_probs=26.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      +..|+|.|++|+||||+|+.+++.++..++
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            356889999999999999999999987654

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.60  E-value=0.0015  Score=58.07  Aligned_cols=27  Identities=30%  Similarity=0.630  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+.+|+|+|++||||||++..|+..+
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            346799999999999999999999876

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.60  E-value=0.0012  Score=59.59  Aligned_cols=26  Identities=23%  Similarity=0.432  Sum_probs=24.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      ..++|.|+||+|||++|+.+++.++.
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            58999999999999999999999874

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.58  E-value=0.0015  Score=53.64  Aligned_cols=25  Identities=32%  Similarity=0.272  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+++++|++|+||||++-.++..+
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4588999999999999997776655

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.57  E-value=0.0015  Score=59.20  Aligned_cols=27  Identities=15%  Similarity=0.156  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+..++|.|++|+||||+++.+++.+
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999976

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.55  E-value=0.0015  Score=54.68  Aligned_cols=26  Identities=23%  Similarity=0.279  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.+++|.|++||||||+++.|+..+
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998653

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.55  E-value=0.0012  Score=58.65  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      .+..+++.|+||+||||+++.|++.++..++.+
T Consensus        47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i   79 (324)
T 3u61_B           47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFV   79 (324)
T ss_dssp             CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            345778888899999999999999998766544

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.55  E-value=0.001  Score=59.46  Aligned_cols=29  Identities=17%  Similarity=0.257  Sum_probs=25.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      .-++|.|+||+|||++++.|++.++..++
T Consensus        47 ~~vll~G~pGtGKT~la~~la~~~~~~~~   75 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAKTMDLDFH   75 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence            36889999999999999999999886544

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.54  E-value=0.0018  Score=57.50  Aligned_cols=27  Identities=30%  Similarity=0.426  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+.+|+|.|+.||||||+++.|+..+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            346799999999999999999999876

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.54  E-value=0.0014  Score=62.29  Aligned_cols=30  Identities=17%  Similarity=0.328  Sum_probs=25.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      .-|+|.|+||+||||+++.|+..++..++.
T Consensus        65 ~GvLL~GppGtGKTtLaraIa~~~~~~~i~   94 (499)
T 2dhr_A           65 KGVLLVGPPGVGKTHLARAVAGEARVPFIT   94 (499)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            348999999999999999999998765544

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.53  E-value=0.0013  Score=56.25  Aligned_cols=27  Identities=30%  Similarity=0.217  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+.-+
T Consensus        29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            345689999999999999999997543

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.52  E-value=0.0012  Score=59.81  Aligned_cols=26  Identities=19%  Similarity=0.446  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+..++|.|++|+||||+++.+++.+
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            44578899999999999999999987

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.51  E-value=0.00042  Score=54.28  Aligned_cols=25  Identities=12%  Similarity=0.143  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      .-|+|.|++|+|||++|+.|++..+
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CcEEEECCCCccHHHHHHHHHHhCC
Confidence            3578999999999999999988765

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.50  E-value=0.0016  Score=61.65  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=27.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      .+.-|+|.|+||+|||++|+.|++.++.+++.+
T Consensus       237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v  269 (489)
T 3hu3_A          237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI  269 (489)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred             CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            345699999999999999999999998766543

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.50  E-value=0.0015  Score=58.90  Aligned_cols=26  Identities=27%  Similarity=0.478  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+..++|.|++|+||||+++.+++.+
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            35578999999999999999999977

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.48  E-value=0.0017  Score=54.03  Aligned_cols=33  Identities=21%  Similarity=0.128  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC--Cceeeh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYG--LVHIAA  115 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg--~~~i~~  115 (303)
                      ...+++|.|++||||||++..|+...+  ..+++.
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~   53 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT   53 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence            345899999999999999999987433  334443

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.47  E-value=0.0016  Score=52.81  Aligned_cols=26  Identities=15%  Similarity=0.165  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .....|+|.|.+|+||||+.+.|...
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC
Confidence            34578999999999999999998753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.45  E-value=0.0019  Score=58.50  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .++|.|++|+||||+++.+++.+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999988

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.43  E-value=0.0022  Score=56.39  Aligned_cols=24  Identities=13%  Similarity=0.207  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..++|.|+||+||||+|+.|++.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            378999999999999999999987

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.42  E-value=0.0014  Score=55.60  Aligned_cols=26  Identities=27%  Similarity=0.171  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+.-+
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44589999999999999999997543

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.40  E-value=0.0018  Score=55.54  Aligned_cols=24  Identities=25%  Similarity=0.238  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      -+++|.|+.||||||+.+.|+.-+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            589999999999999999997644

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.40  E-value=0.0017  Score=55.53  Aligned_cols=27  Identities=15%  Similarity=0.198  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ....+++|.|+.||||||+.+.|+.-+
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           29 PEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345689999999999999999997543

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=96.37  E-value=0.0047  Score=56.79  Aligned_cols=29  Identities=14%  Similarity=-0.061  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      .+..|+|+||+|   +|++++|.+.+.-.+.+
T Consensus       231 ~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~  259 (391)
T 3tsz_A          231 FLRPVTIFGPIA---DVAREKLAREEPDIYQI  259 (391)
T ss_dssp             SCCCEEEESTTH---HHHHHHHHHHCTTTEEE
T ss_pred             CCCEEEEECCCH---HHHHHHHHhhCcccccc
Confidence            556799999998   89999999887543443

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.37  E-value=0.002  Score=53.37  Aligned_cols=31  Identities=16%  Similarity=0.266  Sum_probs=22.4

Q ss_pred             hhcccCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           77 LASATVEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        77 ~~~~~~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      |.........|+|.|.+|+||||+.++|...
T Consensus        21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCcccceeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3333455678999999999999999999764

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.37  E-value=0.0021  Score=52.14  Aligned_cols=33  Identities=15%  Similarity=0.314  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAG  116 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d  116 (303)
                      ...-|+|+|++|+||||+|..|.+ .|...++-|
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~-rG~~lvaDD   47 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALID-RGHQLVCDD   47 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHH-TTCEEEESS
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH-cCCeEecCC
Confidence            345789999999999999999987 487766544

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.36  E-value=0.0026  Score=59.95  Aligned_cols=27  Identities=19%  Similarity=0.258  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .....++|.|+||+|||++++.|++.+
T Consensus       199 ~~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            344567899999999999999999997

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.36  E-value=0.0016  Score=54.50  Aligned_cols=25  Identities=16%  Similarity=0.045  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ..-+++|.|+.||||||+.+.|+..
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3458999999999999999999863

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.34  E-value=0.0027  Score=57.67  Aligned_cols=27  Identities=30%  Similarity=0.426  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+.+|+|.|+.||||||+++.|+..+
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            356799999999999999999999876

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.34  E-value=0.0037  Score=58.42  Aligned_cols=37  Identities=22%  Similarity=0.220  Sum_probs=29.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh-----CC--ceeehHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY-----GL--VHIAAGDLLR  120 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l-----g~--~~i~~d~l~~  120 (303)
                      +..++|.|++|+||||+++.|+..+     +.  .+++..++..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~  173 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN  173 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence            5678999999999999999999876     43  4566665543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.33  E-value=0.0022  Score=51.96  Aligned_cols=25  Identities=20%  Similarity=0.316  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +...|+|.|.+|+||||+...|...
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcC
Confidence            4468999999999999999999764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.33  E-value=0.002  Score=55.18  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+.-+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           26 QPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            455689999999999999999997644

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.32  E-value=0.0019  Score=56.06  Aligned_cols=27  Identities=30%  Similarity=0.124  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+.-+
T Consensus        30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           30 RAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345689999999999999999997644

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.32  E-value=0.0027  Score=49.63  Aligned_cols=24  Identities=29%  Similarity=0.445  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ++.|+|.|.+|+||||+.+.|...
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            1 MHKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            357999999999999999999764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.32  E-value=0.0017  Score=56.87  Aligned_cols=27  Identities=19%  Similarity=0.086  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+.-+
T Consensus        32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           32 KRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            345689999999999999999997644

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.31  E-value=0.0034  Score=55.73  Aligned_cols=39  Identities=8%  Similarity=0.049  Sum_probs=29.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC----C--ceeehHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYG----L--VHIAAGDLLRAE  122 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg----~--~~i~~d~l~~~~  122 (303)
                      ...++|.|++|+|||+++..|+..+.    .  .+++..+++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l  196 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV  196 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence            46889999999999999999988653    3  346776666543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.31  E-value=0.0032  Score=57.01  Aligned_cols=28  Identities=25%  Similarity=0.397  Sum_probs=25.0

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+..+|+|+|.||+||||++..|+..+
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999998876

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.31  E-value=0.003  Score=53.49  Aligned_cols=28  Identities=14%  Similarity=0.029  Sum_probs=23.3

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+..+++++|++|+||||++-.++.++
T Consensus         9 ~~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A            9 KKIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             --CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cCCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            3456799999999999999998888776

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.31  E-value=0.0029  Score=52.70  Aligned_cols=26  Identities=31%  Similarity=0.288  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +.++|+|+|.+|+||||++..|+..+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            56789999999999999999999875

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.31  E-value=0.0017  Score=55.97  Aligned_cols=26  Identities=15%  Similarity=0.179  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      +..|+|.|++|+|||++|+.|++..+
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            34678999999999999999998763

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.30  E-value=0.0023  Score=52.31  Aligned_cols=24  Identities=17%  Similarity=0.317  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ..+|+|.|++||||||+.+.|+..
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            368999999999999999999764

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.29  E-value=0.0025  Score=56.30  Aligned_cols=26  Identities=19%  Similarity=0.227  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ++.+|+|+|+.|+||||++..|+..+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45699999999999999999998765

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.29  E-value=0.0019  Score=56.27  Aligned_cols=27  Identities=22%  Similarity=0.257  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+.-+
T Consensus        35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           35 ASGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            345689999999999999999997643

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.29  E-value=0.0019  Score=55.60  Aligned_cols=27  Identities=37%  Similarity=0.405  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+.-+
T Consensus        33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           33 KQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345689999999999999999997644

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.29  E-value=0.0022  Score=54.20  Aligned_cols=25  Identities=16%  Similarity=0.174  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ...+++|.|++||||||++..|+..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3458999999999999999999884

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.28  E-value=0.0022  Score=58.33  Aligned_cols=28  Identities=18%  Similarity=0.297  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      ..+++|.|++||||||+++.|+..+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            5689999999999999999999987654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.27  E-value=0.0023  Score=55.07  Aligned_cols=25  Identities=16%  Similarity=0.221  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ..-+++|.|+.||||||+.+.|+.-
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999763

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.27  E-value=0.0021  Score=55.80  Aligned_cols=27  Identities=22%  Similarity=0.187  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+.-+
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            455689999999999999999997644

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.25  E-value=0.0026  Score=55.32  Aligned_cols=26  Identities=23%  Similarity=0.181  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ...-+++|.|+.||||||+.+.|+.-
T Consensus        44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           44 HPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45568999999999999999999763

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.25  E-value=0.0029  Score=49.45  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +..|+|.|.+|+||||+.+.|...
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Confidence            457999999999999999999754

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.25  E-value=0.002  Score=55.08  Aligned_cols=26  Identities=23%  Similarity=0.215  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+.-+
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45589999999999999999997644

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.25  E-value=0.0029  Score=50.26  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ...|+|.|.+|+||||+.++|..
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            36899999999999999999964

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.24  E-value=0.0022  Score=55.91  Aligned_cols=27  Identities=26%  Similarity=0.357  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+.-+
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            455689999999999999999997654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.24  E-value=0.0021  Score=54.65  Aligned_cols=27  Identities=15%  Similarity=0.246  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ....+++|.|+.||||||+.+.|+.-+
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           32 ERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345689999999999999999997654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.24  E-value=0.003  Score=59.61  Aligned_cols=27  Identities=22%  Similarity=0.450  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+.+|+|.|+.||||||+++.|+..+
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            356799999999999999999999866

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.24  E-value=0.0031  Score=49.38  Aligned_cols=25  Identities=16%  Similarity=0.238  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +...|+|.|.+|+||||+.+.|...
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcC
Confidence            3468999999999999999998753

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.24  E-value=0.0023  Score=55.49  Aligned_cols=27  Identities=26%  Similarity=0.326  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+.+++|.|+.||||||+.+.|+.-+
T Consensus        44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           44 PSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            455689999999999999999997644

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.24  E-value=0.0021  Score=55.65  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+.-+
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999997644

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.23  E-value=0.0029  Score=50.68  Aligned_cols=25  Identities=16%  Similarity=0.181  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+.+.|...
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Confidence            4468999999999999999999753

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.23  E-value=0.0018  Score=54.46  Aligned_cols=26  Identities=19%  Similarity=0.146  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+.-+
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45589999999999999999996543

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.22  E-value=0.003  Score=55.49  Aligned_cols=27  Identities=19%  Similarity=0.172  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|++||||||+++.|+..+
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999998765

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.22  E-value=0.004  Score=56.07  Aligned_cols=28  Identities=25%  Similarity=0.444  Sum_probs=24.5

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .....+|+|+|++||||||+.+.|+..+
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            4567899999999999999999998754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.22  E-value=0.0028  Score=52.05  Aligned_cols=26  Identities=27%  Similarity=0.271  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+...|+|.|.+|+||||+.+.|...
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            34578999999999999999999763

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.21  E-value=0.0024  Score=55.26  Aligned_cols=27  Identities=22%  Similarity=0.192  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+-+++|.|+.||||||+.+.|+.-+
T Consensus        39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           39 EEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            345689999999999999999997643

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.21  E-value=0.0034  Score=49.17  Aligned_cols=25  Identities=16%  Similarity=0.181  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +...|+|.|.+|+||||+.+.|...
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999999753

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.21  E-value=0.0032  Score=50.77  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +...|+|.|.+|+||||+.+.|..
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            456899999999999999999975

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.20  E-value=0.0034  Score=56.80  Aligned_cols=26  Identities=27%  Similarity=0.452  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...+|+|+|+|||||||+.+.|...+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            35799999999999999999998754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.19  E-value=0.0033  Score=50.06  Aligned_cols=26  Identities=19%  Similarity=0.266  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+...|+|.|.+|+||||+.+.|...
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34568999999999999999999764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.19  E-value=0.0035  Score=57.26  Aligned_cols=27  Identities=22%  Similarity=0.263  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ....+|+|+|++||||||+.+.|+..+
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            445689999999999999999998865

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.18  E-value=0.0028  Score=50.45  Aligned_cols=25  Identities=16%  Similarity=0.266  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+.+.|...
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            3468999999999999999999753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.18  E-value=0.0032  Score=51.15  Aligned_cols=26  Identities=19%  Similarity=0.193  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .....|+|.|.+|+||||+.++|...
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhC
Confidence            44568999999999999999998753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.17  E-value=0.0028  Score=56.69  Aligned_cols=24  Identities=17%  Similarity=0.389  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           86 KIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      .++|.|+||+||||+++.|++.++
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            488999999999999999999864

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.17  E-value=0.003  Score=52.18  Aligned_cols=26  Identities=19%  Similarity=0.256  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .....|+|.|.+|+||||+...|...
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcC
Confidence            34568999999999999999999763

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.16  E-value=0.0028  Score=56.85  Aligned_cols=23  Identities=17%  Similarity=0.385  Sum_probs=21.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhC
Q 022042           87 IMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ++|.||+|+||||+++.|++.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            88999999999999999999863

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.16  E-value=0.0034  Score=58.48  Aligned_cols=26  Identities=35%  Similarity=0.475  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.+|+|+|++||||||++..|+..+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999999776

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.15  E-value=0.0018  Score=57.99  Aligned_cols=24  Identities=17%  Similarity=0.320  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           86 KIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      -|+|.|+||+|||++|+.|++.++
T Consensus        47 ~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCc
Confidence            488999999999999999999876

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.14  E-value=0.0026  Score=56.75  Aligned_cols=25  Identities=20%  Similarity=0.198  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +..+++|+|+.||||||+.+.|...
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhh
Confidence            4568999999999999999999864

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.13  E-value=0.0023  Score=63.99  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=28.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      +.-|++.||||+|||.+|+.||.+++..++++
T Consensus       511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v  542 (806)
T 3cf2_A          511 SKGVLFYGPPGCGKTLLAKAIANECQANFISI  542 (806)
T ss_dssp             CSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred             CceEEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence            34588999999999999999999999877764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.12  E-value=0.0034  Score=57.01  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+|+|+|++||||||+.+.|+..+
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            33489999999999999999998765

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.12  E-value=0.004  Score=55.37  Aligned_cols=33  Identities=12%  Similarity=0.102  Sum_probs=28.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGD  117 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~  117 (303)
                      ..++|.|++|+||||+++.+++..+..+++...
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~   64 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE   64 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence            589999999999999999999988866776644

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.12  E-value=0.0026  Score=54.84  Aligned_cols=26  Identities=15%  Similarity=0.128  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+.-+
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            44589999999999999999997644

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.12  E-value=0.0028  Score=55.07  Aligned_cols=27  Identities=22%  Similarity=0.326  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+.-+
T Consensus        31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           31 NEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            345689999999999999999997644

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.12  E-value=0.0036  Score=49.88  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+.+.|...
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4568999999999999999998753

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.12  E-value=0.0037  Score=51.26  Aligned_cols=24  Identities=17%  Similarity=0.317  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ...|+|.|++|+||||+.+.|...
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            357999999999999999999764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.12  E-value=0.0038  Score=58.21  Aligned_cols=26  Identities=23%  Similarity=0.459  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +|.+|+|+|++|+||||++..|+..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence            46799999999999999999999876

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.11  E-value=0.0041  Score=56.06  Aligned_cols=27  Identities=19%  Similarity=0.277  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      +..++|+|++|+||||+++.+++.++.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346889999999999999999998864

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.10  E-value=0.0042  Score=51.89  Aligned_cols=27  Identities=22%  Similarity=0.174  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+..+|+|+|.+|+||||++.+|+..+
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999999875

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.10  E-value=0.0046  Score=50.10  Aligned_cols=26  Identities=15%  Similarity=0.262  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .....|+|.|.+|+||||+.++|...
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            45678999999999999999999875

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.09  E-value=0.0026  Score=55.71  Aligned_cols=27  Identities=19%  Similarity=0.214  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+.-+
T Consensus        45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           45 AKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            355689999999999999999997644

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.09  E-value=0.0031  Score=51.22  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ...|+|.|.+|+||||+.+.|...
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            468999999999999999999753

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.09  E-value=0.0035  Score=52.95  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+|||||||++..++...
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~~   47 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWNG   47 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999998887643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.08  E-value=0.0041  Score=50.93  Aligned_cols=27  Identities=22%  Similarity=0.342  Sum_probs=21.6

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ..+...|+|.|.+|+||||+.+.|...
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            345679999999999999999999753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.08  E-value=0.0027  Score=51.45  Aligned_cols=26  Identities=23%  Similarity=0.309  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+...|+|.|.+|+||||+.+.|...
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            34578999999999999999988654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.07  E-value=0.004  Score=48.89  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+.+.|...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcC
Confidence            3468999999999999999999763

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.07  E-value=0.0033  Score=56.43  Aligned_cols=22  Identities=27%  Similarity=0.594  Sum_probs=20.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Q 022042           87 IMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ++|.|++|+||||+++.|++.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8899999999999999999965

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.06  E-value=0.0038  Score=54.42  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..++|.|++||||||+.+.|+..+
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999998765

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.06  E-value=0.0044  Score=48.65  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ...|+|.|.+|+||||+.+.|..
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999999975

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.05  E-value=0.0028  Score=54.70  Aligned_cols=26  Identities=19%  Similarity=0.189  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+.-+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45589999999999999999997643

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.05  E-value=0.0035  Score=56.92  Aligned_cols=27  Identities=22%  Similarity=0.117  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.||+||||||+.+.|+--+
T Consensus        28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           28 DPGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            345689999999999999999998643

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.05  E-value=0.0046  Score=50.14  Aligned_cols=25  Identities=28%  Similarity=0.262  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +...|+|.|.+|+||||+.++|...
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4468999999999999999888653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.04  E-value=0.0041  Score=51.02  Aligned_cols=25  Identities=24%  Similarity=0.256  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+.+.|...
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999999763

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.03  E-value=0.003  Score=51.34  Aligned_cols=26  Identities=19%  Similarity=0.193  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+.|+|.|.+|+||||+.+.|....
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            45789999999999999999998653

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.03  E-value=0.0045  Score=61.81  Aligned_cols=36  Identities=14%  Similarity=0.130  Sum_probs=28.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh----------CCceeehHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY----------GLVHIAAGD  117 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l----------g~~~i~~d~  117 (303)
                      .....++|.|+||+|||++|+.|++.+          +..++..+-
T Consensus       199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~  244 (758)
T 3pxi_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM  244 (758)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred             CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence            344578999999999999999999997          666665543

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.02  E-value=0.0048  Score=55.13  Aligned_cols=27  Identities=22%  Similarity=0.276  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+.+|+|+|++|+||||++..|+..+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999999876

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.01  E-value=0.0053  Score=52.57  Aligned_cols=28  Identities=18%  Similarity=0.242  Sum_probs=24.1

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+..++++.|.+|+||||++..|+..+
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999999765

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.01  E-value=0.0041  Score=50.41  Aligned_cols=25  Identities=28%  Similarity=0.397  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ++...|+|.|.+|+||||+.+.|..
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHc
Confidence            4457899999999999999999975

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.00  E-value=0.0056  Score=48.28  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+...|+|.|.+|+||||+.+.|..
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3457899999999999999999965

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.00  E-value=0.0036  Score=50.36  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +...|+|.|.+|+||||+.++|..
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999999975

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.99  E-value=0.005  Score=49.01  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+...|+|.|.+|+||||+.+.|..
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3567899999999999999999965

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.98  E-value=0.0041  Score=56.87  Aligned_cols=27  Identities=22%  Similarity=0.215  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.||+||||||+.+.|+--+
T Consensus        27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           27 HEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            345689999999999999999998643

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.97  E-value=0.0028  Score=57.64  Aligned_cols=28  Identities=21%  Similarity=0.254  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ....+|+|+|+.||||||+.+.|+..+.
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4556899999999999999999988764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.97  E-value=0.0051  Score=49.94  Aligned_cols=26  Identities=15%  Similarity=0.250  Sum_probs=22.5

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ......|+|.|.+|+||||+.+.|..
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHc
Confidence            34557899999999999999999976

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.97  E-value=0.0045  Score=50.69  Aligned_cols=26  Identities=27%  Similarity=0.305  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .....|+|.|.+|+||||+.+.|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            34578999999999999999999764

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=95.96  E-value=0.0047  Score=54.44  Aligned_cols=25  Identities=20%  Similarity=0.352  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ..++|.|++|+||||+++.+++.++
T Consensus        47 ~~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           47 PHLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhc
Confidence            3489999999999999999999863

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.96  E-value=0.0042  Score=52.66  Aligned_cols=24  Identities=25%  Similarity=0.428  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..+.|+|.|.+|+||||+.+.|..
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHcC
Confidence            456899999999999999999965

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.96  E-value=0.0043  Score=56.34  Aligned_cols=27  Identities=19%  Similarity=0.265  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.||+||||||+.+.|+--+
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           27 KDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            345689999999999999999998643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.94  E-value=0.0048  Score=48.86  Aligned_cols=24  Identities=21%  Similarity=0.450  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ....|+|.|.+|+||||+.++|..
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhc
Confidence            346899999999999999999864

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=95.94  E-value=0.0064  Score=50.12  Aligned_cols=27  Identities=19%  Similarity=0.023  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.++++++|++||||||.+-.++.++
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            345799999999999999999888887

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.93  E-value=0.0049  Score=48.94  Aligned_cols=25  Identities=28%  Similarity=0.276  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+.+.|...
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3468999999999999999999764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.91  E-value=0.0046  Score=56.24  Aligned_cols=27  Identities=26%  Similarity=0.247  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+--+
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           27 KDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            345689999999999999999998643

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.89  E-value=0.0037  Score=54.31  Aligned_cols=25  Identities=32%  Similarity=0.315  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .-+++|.|+.||||||+.+.|+.-+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            5689999999999999999997543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.89  E-value=0.0045  Score=49.28  Aligned_cols=24  Identities=21%  Similarity=0.338  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ....|+|.|.+|+||||+.+.|..
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             cceEEEEECCCCCCHHHHHHHHhc
Confidence            346899999999999999998853

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.89  E-value=0.0044  Score=56.21  Aligned_cols=27  Identities=30%  Similarity=0.203  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+--+
T Consensus        39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           39 REGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            345689999999999999999998643

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.89  E-value=0.0057  Score=49.54  Aligned_cols=25  Identities=28%  Similarity=0.393  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+...|...
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.89  E-value=0.0051  Score=49.28  Aligned_cols=25  Identities=24%  Similarity=0.555  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+.+.|...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999753

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.88  E-value=0.0048  Score=56.08  Aligned_cols=27  Identities=19%  Similarity=0.079  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+.-+
T Consensus        52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           52 PAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            456699999999999999999997643

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.88  E-value=0.0048  Score=53.74  Aligned_cols=25  Identities=8%  Similarity=0.003  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .-+++|.|++||||||++..|+..+
T Consensus        30 G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           30 GTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3489999999999999999998643

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.88  E-value=0.0048  Score=56.29  Aligned_cols=27  Identities=19%  Similarity=0.214  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+--+
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            345689999999999999999998643

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.86  E-value=0.007  Score=54.48  Aligned_cols=29  Identities=24%  Similarity=0.333  Sum_probs=25.0

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...+..+|+|+|++|+||||+++.|+..+
T Consensus        52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34567899999999999999999998765

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=95.86  E-value=0.0041  Score=54.83  Aligned_cols=27  Identities=15%  Similarity=0.246  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+.+++|.|+.||||||+.+.|+.-+
T Consensus        62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           62 ERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            455689999999999999999997643

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.86  E-value=0.0049  Score=51.07  Aligned_cols=24  Identities=21%  Similarity=0.199  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ....|+|.|.+|+||||+.+.|..
T Consensus        24 ~~~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           24 YLIKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHhc
Confidence            346899999999999999999874

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.85  E-value=0.0059  Score=48.54  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +...|+|.|.+|+||||+.++|..
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHh
Confidence            456899999999999999999975

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.85  E-value=0.006  Score=50.57  Aligned_cols=26  Identities=27%  Similarity=0.354  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ....|+|.|++|+||||+...|....
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999998753

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.85  E-value=0.005  Score=50.81  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+.++|...
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            4568999999999999999998763

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.83  E-value=0.0035  Score=51.28  Aligned_cols=25  Identities=24%  Similarity=0.376  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +...|+|.|.+|+||||+.+.|...
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhc
Confidence            4568999999999999999877553

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.83  E-value=0.0052  Score=49.32  Aligned_cols=25  Identities=20%  Similarity=0.328  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +...|+|.|.+|+||||+.+.|...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999999753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.83  E-value=0.0069  Score=56.17  Aligned_cols=28  Identities=21%  Similarity=0.181  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ...-+|+|+|+.||||||+.+.|...++
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            4456899999999999999999998774

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.82  E-value=0.0058  Score=49.41  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+...|+|.|.+|+||||+.+.|..
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHc
Confidence            3457899999999999999999875

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.81  E-value=0.0054  Score=49.22  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+.+.|...
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            4578999999999999999999753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.80  E-value=0.0059  Score=49.50  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ...|+|.|.+|+||||+.++|...
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            468999999999999999999763

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.80  E-value=0.0058  Score=55.29  Aligned_cols=28  Identities=14%  Similarity=0.024  Sum_probs=24.5

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      -....++.|.|++||||||++..|+..+
T Consensus       128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          128 IETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3456799999999999999999999876

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.80  E-value=0.0052  Score=48.77  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ...|+|.|.+|+||||+.+.|..
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999999974

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=95.79  E-value=0.0072  Score=52.46  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      ..|+|.||||+|||++|..|+..+++
T Consensus       105 n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A          105 NTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            46999999999999999999997644

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.78  E-value=0.003  Score=56.12  Aligned_cols=27  Identities=22%  Similarity=0.358  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ....+++|.|+.||||||+.+.|+.-+
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            455799999999999999999997655

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.78  E-value=0.0051  Score=56.16  Aligned_cols=26  Identities=19%  Similarity=0.252  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|++||||||+.+.|+--+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            44589999999999999999998643

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.78  E-value=0.0052  Score=49.95  Aligned_cols=26  Identities=19%  Similarity=0.323  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+...|+|.|.+|+||||+.+.|...
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcC
Confidence            34578999999999999999999753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.78  E-value=0.0059  Score=48.08  Aligned_cols=25  Identities=20%  Similarity=0.232  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+.+.|...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3468999999999999999999753

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.78  E-value=0.0066  Score=48.44  Aligned_cols=26  Identities=19%  Similarity=0.096  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+...|+|.|.+|+||||+.+.|...
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            44578999999999999999998753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.77  E-value=0.0071  Score=48.43  Aligned_cols=25  Identities=20%  Similarity=0.275  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+.+.|...
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999999753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.77  E-value=0.0062  Score=48.98  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ....|+|.|.+|+||||+.+.|..
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhc
Confidence            356899999999999999999975

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.76  E-value=0.006  Score=50.41  Aligned_cols=26  Identities=15%  Similarity=0.091  Sum_probs=21.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+...|+|.|.+|+||||+..+|...
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34568999999999999999999764

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=95.75  E-value=0.0056  Score=53.78  Aligned_cols=23  Identities=22%  Similarity=0.510  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .++|.|++|+||||+++.+++.+
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHHh
Confidence            38899999999999999999986

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.74  E-value=0.0059  Score=48.01  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +...|+|.|.+|+||||+.+.|...
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3468999999999999999999764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.74  E-value=0.0035  Score=51.61  Aligned_cols=25  Identities=12%  Similarity=0.328  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ....+|+|.|++||||||+.+.|..
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3456899999999999999998853

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.73  E-value=0.0062  Score=47.80  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ...|+|.|.+|+||||+.+.|...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            357999999999999999999753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.73  E-value=0.0065  Score=47.77  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ...|+|.|.+|+||||+.+.|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            35799999999999999999975

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.72  E-value=0.005  Score=49.75  Aligned_cols=22  Identities=36%  Similarity=0.546  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..|+|.|.+|+||||+.++|+.
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999965

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.72  E-value=0.0056  Score=48.10  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ....|+|.|.+|+||||+.+.|..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHc
Confidence            346899999999999999999975

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.72  E-value=0.0062  Score=54.39  Aligned_cols=32  Identities=19%  Similarity=0.223  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC--Cceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYG--LVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg--~~~i~~  115 (303)
                      ...++|.|+||+||||+|..++...|  ..+++.
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            34678999999999999999987643  446655

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.72  E-value=0.0065  Score=48.60  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +...|+|.|.+|+||||+.+.|..
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHc
Confidence            446899999999999999999875

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.71  E-value=0.005  Score=57.85  Aligned_cols=27  Identities=19%  Similarity=0.282  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+.+++|.|+.||||||+++.|+..+
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            456799999999999999999998754

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.71  E-value=0.0065  Score=53.42  Aligned_cols=23  Identities=30%  Similarity=0.556  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .++|.|++|+||||+++.+++.+
T Consensus        44 ~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           44 HMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            38999999999999999999986

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.71  E-value=0.0039  Score=56.36  Aligned_cols=27  Identities=26%  Similarity=0.164  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+--+
T Consensus        24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            345689999999999999999998643

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.71  E-value=0.0066  Score=47.73  Aligned_cols=23  Identities=17%  Similarity=0.251  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ...|+|.|.+|+||||+.+.|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            35799999999999999999965

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.70  E-value=0.0057  Score=49.44  Aligned_cols=26  Identities=35%  Similarity=0.335  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ....|+|.|.+|+||||+.+.|...+
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhhc
Confidence            34689999999999999998887655

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.70  E-value=0.0059  Score=56.07  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ...-+++|.||+||||||+.+.|+.
T Consensus        45 ~~Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           45 SPGQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhC
Confidence            4556899999999999999999975

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.70  E-value=0.0057  Score=48.77  Aligned_cols=26  Identities=19%  Similarity=0.286  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+...|+|.|.+|+||||+.++|...
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34568999999999999999999763

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.69  E-value=0.0065  Score=52.66  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+.|+|.|.+|+||||+.+.|...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999653

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.68  E-value=0.0088  Score=53.57  Aligned_cols=29  Identities=10%  Similarity=0.078  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      .+..++|.|++|+||||+|+.+++.++..
T Consensus        23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~   51 (334)
T 1a5t_A           23 GHHALLIQALPGMGDDALIYALSRYLLCQ   51 (334)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred             cceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence            34578999999999999999999998654

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.67  E-value=0.0073  Score=48.69  Aligned_cols=24  Identities=33%  Similarity=0.285  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           86 KIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      +.+|+|+.||||||+.+.|.--++
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            788999999999999999976654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.67  E-value=0.0071  Score=48.94  Aligned_cols=25  Identities=16%  Similarity=0.247  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+.+.|...
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3468999999999999999999753

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.64  E-value=0.0057  Score=56.96  Aligned_cols=26  Identities=23%  Similarity=0.294  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.+|+|+|++|+||||++..|+..+
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999999876

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.63  E-value=0.0064  Score=60.61  Aligned_cols=28  Identities=14%  Similarity=0.331  Sum_probs=25.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      .++|.|+||+|||++|+.|++.++..++
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~~~  517 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIELL  517 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence            6899999999999999999999986544

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.63  E-value=0.0076  Score=47.44  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..|+|.|.+|+||||+.+.|..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999863

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.63  E-value=0.0085  Score=48.78  Aligned_cols=26  Identities=23%  Similarity=0.254  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .....|+|.|.+|+||||+.++|...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34578999999999999999999763

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.62  E-value=0.0074  Score=48.62  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+.++|...
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcC
Confidence            4468999999999999999999764

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.62  E-value=0.0081  Score=57.02  Aligned_cols=27  Identities=33%  Similarity=0.438  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .++.+|+|+|.+|+||||++..|+..+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            346789999999999999999999766

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.61  E-value=0.0065  Score=48.56  Aligned_cols=24  Identities=29%  Similarity=0.274  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +...|+|.|.+|+||||+.+.|..
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            346899999999999999999974

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.60  E-value=0.0083  Score=48.56  Aligned_cols=24  Identities=17%  Similarity=0.231  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ....|+|.|.+|+||||+.+.|..
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            456899999999999999999964

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.59  E-value=0.0078  Score=54.58  Aligned_cols=26  Identities=23%  Similarity=0.098  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-++.|.|+|||||||++..++..+
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.57  E-value=0.0078  Score=47.98  Aligned_cols=24  Identities=17%  Similarity=0.213  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ....|+|.|.+|+||||+.+.|..
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~   34 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVK   34 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHc
Confidence            346899999999999999999875

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.56  E-value=0.0072  Score=49.16  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ...|+|.|.+|+||||+.+.|..
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            35799999999999999999853

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.56  E-value=0.0075  Score=47.33  Aligned_cols=21  Identities=29%  Similarity=0.615  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIK  105 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La  105 (303)
                      ..|+|.|.+|+||||+.++|.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            579999999999999999884

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.54  E-value=0.0042  Score=55.78  Aligned_cols=26  Identities=27%  Similarity=0.294  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...+++|+|++||||||+.+.|+..+
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998766

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.54  E-value=0.0093  Score=48.64  Aligned_cols=25  Identities=16%  Similarity=0.181  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+.+.|...
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999999753

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=95.54  E-value=0.0099  Score=52.42  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.+|+|+|+.|+||||++..|+..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56688999999999999999999876

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.52  E-value=0.0044  Score=58.80  Aligned_cols=25  Identities=16%  Similarity=0.286  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      .-|+|.|+||+|||++|+.|++.++
T Consensus        42 ~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           42 ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             CeeEeecCchHHHHHHHHHHHHHHh
Confidence            3688999999999999999998774

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.52  E-value=0.0062  Score=48.71  Aligned_cols=24  Identities=29%  Similarity=0.382  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIK  105 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La  105 (303)
                      .+...|+|.|.+|+||||+.+.|.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            456799999999999999998885

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.51  E-value=0.0081  Score=48.85  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=20.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +...|+|.|.+|+||||+.++|..
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            445899999999999999999976

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.51  E-value=0.0041  Score=56.39  Aligned_cols=27  Identities=22%  Similarity=0.180  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+--+
T Consensus        29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            345689999999999999999998643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.49  E-value=0.0087  Score=47.64  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+.+.|...
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3468999999999999999999753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.49  E-value=0.0085  Score=48.65  Aligned_cols=26  Identities=27%  Similarity=0.298  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+...|+|.|.+|+||||+.+.|...
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence            34578999999999999999999764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.48  E-value=0.0076  Score=48.43  Aligned_cols=22  Identities=23%  Similarity=0.302  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..|+|.|.+|+||||+.+.|..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999965

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.47  E-value=0.01  Score=47.87  Aligned_cols=25  Identities=24%  Similarity=0.231  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+...|+|.|.+|+||||+.++|..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4567999999999999999999974

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.47  E-value=0.0097  Score=47.91  Aligned_cols=26  Identities=19%  Similarity=0.351  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .....|+|.|.+|+||||+.++|...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            34578999999999999999998643

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=95.46  E-value=0.24  Score=44.15  Aligned_cols=23  Identities=13%  Similarity=0.105  Sum_probs=18.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhh
Q 022042          273 SVNKEDVFAQIDVALTNLLEQRK  295 (303)
Q Consensus       273 ~~s~eev~~~I~~~l~~~l~~~~  295 (303)
                      |.++++.++++..+|..++....
T Consensus       304 NDdLe~A~~~L~~iI~~~~~~~h  326 (337)
T 4dey_A          304 ENQLEDACEHLADYLEAYWKATH  326 (337)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHHHhccC
Confidence            45799999999999999887643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.44  E-value=0.0078  Score=48.61  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +...|+|.|.+|+||||+.++|...
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC
Confidence            4468999999999999999999753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.43  E-value=0.0099  Score=47.75  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+...|+|.|.+|+||||+.+.|..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            3457899999999999999999864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.41  E-value=0.011  Score=46.26  Aligned_cols=22  Identities=32%  Similarity=0.370  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .|+|.|.+|+||||+.+.|...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.40  E-value=0.0092  Score=48.40  Aligned_cols=24  Identities=29%  Similarity=0.445  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ....|+|.|.+|+||||+.+.|..
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            446899999999999999998854

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.39  E-value=0.01  Score=47.87  Aligned_cols=23  Identities=13%  Similarity=0.229  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +.|+|.|.+|+||||+.+.|...
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            58999999999999999998654

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.34  E-value=0.0081  Score=49.17  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIK  105 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La  105 (303)
                      ....|+|.|.+|+|||||.++|.
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999885

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.33  E-value=0.013  Score=52.13  Aligned_cols=31  Identities=13%  Similarity=0.206  Sum_probs=25.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC--ceeeh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGL--VHIAA  115 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~--~~i~~  115 (303)
                      ..++|.|++|+||||+++.+++..+.  .+++.
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~   63 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL   63 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence            48999999999999999999988743  44554

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.33  E-value=0.01  Score=52.47  Aligned_cols=25  Identities=32%  Similarity=0.501  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +.+|+|.|++|+||||++..|+..+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999999776

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.33  E-value=0.011  Score=48.06  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+...|+|.|.+|+||||+.+.|..
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            4557899999999999999998853

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.31  E-value=0.0086  Score=55.20  Aligned_cols=24  Identities=17%  Similarity=0.209  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..-++.|.|++||||||++..|+-
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Confidence            446899999999999999998863

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.31  E-value=0.0082  Score=60.75  Aligned_cols=26  Identities=19%  Similarity=0.303  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ....++|+|+||+||||+++.|++.+
T Consensus       190 ~~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          190 TKNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            34467899999999999999999987

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.29  E-value=0.011  Score=48.52  Aligned_cols=24  Identities=17%  Similarity=0.257  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ....|+|.|.+|+||||+...|..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHhc
Confidence            346899999999999999999975

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.28  E-value=0.011  Score=50.62  Aligned_cols=25  Identities=28%  Similarity=0.480  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+...|...
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999753

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.27  E-value=0.012  Score=49.72  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=19.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .-+++|.|.||+|||++|..++.
T Consensus        30 G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           30 GTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            34899999999999999988754

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.27  E-value=0.01  Score=53.60  Aligned_cols=34  Identities=26%  Similarity=0.099  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCceeehH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAG  116 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l-----g~~~i~~d  116 (303)
                      ...++.|.|+|||||||+|..++...     ...+++..
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E   98 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE   98 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            34589999999999999999998654     24556543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=95.26  E-value=0.011  Score=54.81  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..+|+|.|++||||||+.+.|+.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHhC
Confidence            44999999999999999999976

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.25  E-value=0.007  Score=57.62  Aligned_cols=27  Identities=26%  Similarity=0.262  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+..|+|+|++||||||+.+.|+..+
T Consensus       258 ~~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          258 EHKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             HTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            345679999999999999999998765

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=95.25  E-value=0.01  Score=48.57  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+...|+|.|.+|+||||+.++|..
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            4456899999999999999998853

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.25  E-value=0.011  Score=53.71  Aligned_cols=25  Identities=12%  Similarity=0.125  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ...+++|.|++|+||||+.+.|+..
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCccHHHHHHHHhcc
Confidence            3458999999999999999999643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.24  E-value=0.012  Score=48.33  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=21.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+...|+|.|.+|+||||+..+|..
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHh
Confidence            4457899999999999999999875

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.21  E-value=0.015  Score=54.17  Aligned_cols=27  Identities=19%  Similarity=0.336  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+.+|+|+|+.|+||||++..|+..|
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            346789999999999999999998765

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.18  E-value=0.017  Score=48.79  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=25.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh---CCc--eeehH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY---GLV--HIAAG  116 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l---g~~--~i~~d  116 (303)
                      .++|++.|++|+||||++-.++..+   |..  ++++|
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D   43 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE   43 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence            3689999999999999988887765   543  34554

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=95.16  E-value=0.012  Score=51.97  Aligned_cols=25  Identities=16%  Similarity=0.260  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...+++|.|++|+||||+.+.|. .+
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            34689999999999999999998 54

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=95.16  E-value=0.011  Score=50.96  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +.|+|.|.+||||||+.+.|...
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            57999999999999999999654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.16  E-value=0.014  Score=48.06  Aligned_cols=26  Identities=19%  Similarity=0.121  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .....|+|.|.+|+||||+.+.|...
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            34578999999999999999999753

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.15  E-value=0.012  Score=48.74  Aligned_cols=24  Identities=17%  Similarity=0.387  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +...|+|.|.+|+||||+.+.|..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            346899999999999999999864

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.15  E-value=0.014  Score=52.55  Aligned_cols=26  Identities=12%  Similarity=-0.066  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....++.|.|+|||||||+|..|+..
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45579999999999999999999886

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.14  E-value=0.012  Score=51.98  Aligned_cols=25  Identities=16%  Similarity=0.284  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...|+|.|++|+|||++|+.|++..
T Consensus        25 ~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           25 DATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEECCCCchHHHHHHHHHHhC
Confidence            4468899999999999999999854

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=95.14  E-value=0.019  Score=48.11  Aligned_cols=27  Identities=19%  Similarity=0.073  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ....+.+++|++||||||.+-.++.++
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            345789999999999999998888877

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=95.12  E-value=0.01  Score=57.65  Aligned_cols=26  Identities=19%  Similarity=0.378  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ...++|.|++|+||||+++.|+..++
T Consensus        60 g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           60 KRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            35789999999999999999999774

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.11  E-value=0.012  Score=48.22  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ....|+|.|.+|+||||+.+.|..
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHh
Confidence            346899999999999999999863

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.08  E-value=0.011  Score=54.74  Aligned_cols=27  Identities=19%  Similarity=0.251  Sum_probs=21.7

Q ss_pred             cCCCeE--EEEEcCCCCCHHHHHHHHHHH
Q 022042           81 TVEPLK--IMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        81 ~~~~~~--I~I~G~pGSGKSTla~~La~~  107 (303)
                      -..+-+  ++|.|++||||||+.+.|+..
T Consensus        37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           37 VSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            344556  999999999999999999653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.08  E-value=0.015  Score=47.38  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ....|+|.|.+|+||||+.+.|..
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            456899999999999999998864

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=95.07  E-value=0.014  Score=53.09  Aligned_cols=28  Identities=32%  Similarity=0.398  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      .++..|+|.|.+||||||+++.+.-.++
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~i~~~   58 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMRIIHG   58 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred             cCccEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4578999999999999999999954443

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.07  E-value=0.017  Score=57.60  Aligned_cols=27  Identities=15%  Similarity=0.142  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+..++|+|+||+||||+++.|++.+
T Consensus       205 ~~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          205 RRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999999987

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.07  E-value=0.016  Score=47.56  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ....|+|.|.+|+||||+...|..
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            346899999999999999999975

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.06  E-value=0.008  Score=48.13  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=10.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ...|+|.|.+|+||||+.+.|..
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEEECCCCC-----------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999998864

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.03  E-value=0.016  Score=48.48  Aligned_cols=24  Identities=29%  Similarity=0.558  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +...|+|.|.+|+||||+...|..
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            457899999999999999999864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.03  E-value=0.012  Score=55.13  Aligned_cols=31  Identities=26%  Similarity=0.293  Sum_probs=21.1

Q ss_pred             hhhcccCCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           76 VLASATVEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        76 ~~~~~~~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..+...+..++|+|.|.+|+|||||.++|..
T Consensus        15 ~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~~   45 (456)
T 4dcu_A           15 VPRGSHMGKPVVAIVGRPNVGKSTIFNRIAG   45 (456)
T ss_dssp             --------CCEEEEECSSSSSHHHHHHHHEE
T ss_pred             CCChhhcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            3344445567999999999999999999964

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.02  E-value=0.017  Score=53.63  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.+|+|+|+.||||||++..|+..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46688999999999999999999877

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=95.01  E-value=0.014  Score=53.28  Aligned_cols=26  Identities=15%  Similarity=0.275  Sum_probs=22.2

Q ss_pred             CCeEEEE--EcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMI--SGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I--~G~pGSGKSTla~~La~~l  108 (303)
                      .+..++|  .|++|+||||+++.+++.+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            4456777  9999999999999998875

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.01  E-value=0.014  Score=47.88  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ...|+|.|.+|+||||+.++|..
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhh
Confidence            46899999999999999999965

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.00  E-value=0.015  Score=52.74  Aligned_cols=33  Identities=24%  Similarity=0.119  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCceeeh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAA  115 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l-----g~~~i~~  115 (303)
                      ...++.|.|+||+||||+|..|+...     ...+|+.
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            44589999999999999999998754     3456665

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.99  E-value=0.016  Score=47.33  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ...|+|.|.+|+||||+.+.|..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999864

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.96  E-value=0.011  Score=47.80  Aligned_cols=25  Identities=24%  Similarity=0.162  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+.++|...
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999999764

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=94.94  E-value=0.018  Score=57.48  Aligned_cols=33  Identities=15%  Similarity=0.334  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHH
Q 022042           86 KIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDL  118 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l  118 (303)
                      .++|.|+||+|||++|+.|++.+   +  +..+++.++
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~  560 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY  560 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhc
Confidence            68999999999999999999986   2  344555443

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=94.93  E-value=0.016  Score=52.39  Aligned_cols=31  Identities=19%  Similarity=0.055  Sum_probs=26.4

Q ss_pred             cccCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           79 SATVEPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        79 ~~~~~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ..-.+..+++|.|+.||||||+.+.|+..+.
T Consensus        66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3445667999999999999999999998764

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=94.91  E-value=0.015  Score=51.81  Aligned_cols=27  Identities=19%  Similarity=0.170  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ....++.|.|+||+||||+|..|+...
T Consensus       105 ~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          105 ETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            345689999999999999999998764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=94.87  E-value=0.015  Score=51.30  Aligned_cols=24  Identities=25%  Similarity=0.214  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +...|+|.|.||+|||||.+.|..
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g   29 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLG   29 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhC
Confidence            345799999999999999999964

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=94.86  E-value=0.02  Score=50.90  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAG  116 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d  116 (303)
                      ...-|+|.|++|+||||++..|.++ |...++-|
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD  175 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADD  175 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCC
Confidence            3567999999999999999999875 77666443

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=94.85  E-value=0.015  Score=51.31  Aligned_cols=24  Identities=29%  Similarity=0.188  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +..+|+|.|.||+||||+.+.|..
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g   30 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLG   30 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHC
Confidence            345899999999999999999964

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=94.84  E-value=0.017  Score=54.07  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .++|.|++|+||||++..++..+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            88999999999999999998877

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.84  E-value=0.015  Score=55.63  Aligned_cols=26  Identities=15%  Similarity=0.207  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+..+
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            44689999999999999999997644

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=94.84  E-value=0.018  Score=53.73  Aligned_cols=31  Identities=6%  Similarity=0.020  Sum_probs=26.6

Q ss_pred             cccCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           79 SATVEPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        79 ~~~~~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ..-.+..+++|.|++||||||+.+.|+..+.
T Consensus       152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4445677999999999999999999998764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=94.84  E-value=0.018  Score=50.06  Aligned_cols=25  Identities=32%  Similarity=0.432  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +.+.|+|.|.+|+||||+.+.|...
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=94.84  E-value=0.013  Score=47.22  Aligned_cols=24  Identities=13%  Similarity=0.272  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIK  105 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La  105 (303)
                      .+...|+|.|.+|+||||+.+.|.
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999884

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=94.78  E-value=0.016  Score=54.69  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      -+++|.|+.||||||+.+.|+.-+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCC
Confidence            589999999999999999998755

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=94.76  E-value=0.016  Score=51.15  Aligned_cols=23  Identities=17%  Similarity=0.195  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..+++|.|++||||||+.+.|+.
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHST
T ss_pred             CCeEEEECCCCCcHHHHHHHhcc
Confidence            45899999999999999999954

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=94.76  E-value=0.021  Score=46.44  Aligned_cols=24  Identities=17%  Similarity=0.343  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ...|+|.|.+|+|||||..+|...
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            368999999999999999999754

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=94.75  E-value=0.017  Score=51.29  Aligned_cols=26  Identities=15%  Similarity=-0.018  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....++.|.|+||+||||+|..|+..
T Consensus        96 ~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           96 ESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999999865

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=94.75  E-value=0.016  Score=55.92  Aligned_cols=27  Identities=26%  Similarity=0.394  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +.+.+++|.|+.||||||+.+.|+.-+
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            455789999999999999999998765

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=94.73  E-value=0.017  Score=49.81  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ...|+|.|.+|+||||+.+.|..
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHC
Confidence            46899999999999999999975

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=94.73  E-value=0.022  Score=44.73  Aligned_cols=24  Identities=25%  Similarity=0.174  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +.+.+|.|+.||||||+.+.|.-.
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~   46 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVG   46 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            347889999999999999988543

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=94.73  E-value=0.019  Score=55.51  Aligned_cols=25  Identities=20%  Similarity=0.449  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+++|+|+||+||||++..|...+
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4588899999999999999998765

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.73  E-value=0.022  Score=50.56  Aligned_cols=27  Identities=15%  Similarity=0.144  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|.||+||||++..++...
T Consensus        66 ~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           66 KRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            344689999999999999999998754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=94.72  E-value=0.02  Score=49.86  Aligned_cols=24  Identities=33%  Similarity=0.476  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ...|+|.|.||+||||+.+.|...
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            457999999999999999999753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.72  E-value=0.017  Score=55.24  Aligned_cols=27  Identities=22%  Similarity=0.391  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+-.+
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345689999999999999999998644

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=94.70  E-value=0.022  Score=47.18  Aligned_cols=25  Identities=16%  Similarity=0.345  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+.++|...
T Consensus        26 ~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           26 ARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcC
Confidence            3468999999999999999999763

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=94.66  E-value=0.015  Score=56.22  Aligned_cols=27  Identities=30%  Similarity=0.401  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +.+.+++|.|+.||||||+.+.|+.-+
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            456799999999999999999998765

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=94.60  E-value=0.017  Score=48.02  Aligned_cols=26  Identities=19%  Similarity=0.411  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHH-HHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCEL-IKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~-La~~l  108 (303)
                      ....|+|.|.+|+||||+.+. +...+
T Consensus        14 ~~~ki~v~G~~~~GKSsli~~~~~~~~   40 (221)
T 3gj0_A           14 VQFKLVLVGDGGTGKTTFVKRHLTGEF   40 (221)
T ss_dssp             CEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCC
Confidence            346899999999999999998 54444

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=94.56  E-value=0.018  Score=50.90  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ...|+|.|++|+||||+.+.|..
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             CEEEEEECCCCCCHHHHHHHHhC
Confidence            35789999999999999999853

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=94.53  E-value=0.016  Score=51.37  Aligned_cols=33  Identities=9%  Similarity=0.154  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAG  116 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d  116 (303)
                      ...-|+|+|++|+||||+|-.|.+ .|...++-|
T Consensus       146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD  178 (312)
T 1knx_A          146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDD  178 (312)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCC
Confidence            445699999999999999999865 577666544

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.47  E-value=0.017  Score=58.51  Aligned_cols=24  Identities=13%  Similarity=0.207  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..++|.|++|+|||++|+.|++.+
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999999987

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.44  E-value=0.027  Score=52.63  Aligned_cols=27  Identities=19%  Similarity=0.223  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+||+||||++..|+...
T Consensus       201 ~~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          201 QRSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             CTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999988754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.42  E-value=0.018  Score=55.15  Aligned_cols=27  Identities=26%  Similarity=0.194  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|+.||||||+.+.|+..+
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345689999999999999999997643

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=94.42  E-value=0.0098  Score=49.22  Aligned_cols=25  Identities=24%  Similarity=0.238  Sum_probs=20.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .....|+|.|.+|+||||+.+.|..
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~   33 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLD   33 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhc
Confidence            3457899999999999999998863

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=94.41  E-value=0.025  Score=51.95  Aligned_cols=24  Identities=38%  Similarity=0.447  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+..|+|.|+||+||||+.+.|..
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Confidence            346899999999999999999987

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.36  E-value=0.024  Score=55.13  Aligned_cols=26  Identities=19%  Similarity=0.243  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus       102 ~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          102 PGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            34589999999999999999998644

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=94.35  E-value=0.028  Score=46.87  Aligned_cols=23  Identities=17%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ...|+|.|.+|+|||||..++..
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999998863

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.35  E-value=0.024  Score=54.29  Aligned_cols=26  Identities=23%  Similarity=0.170  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45699999999999999999998643

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.34  E-value=0.021  Score=54.47  Aligned_cols=24  Identities=17%  Similarity=0.135  Sum_probs=0.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHH--HH
Q 022042           82 VEPLKIMISGAPASGKGTQCEL--IK  105 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~--La  105 (303)
                      ...-+++|.|++||||||+++.  ++
T Consensus        37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~   62 (525)
T 1tf7_A           37 PIGRSTLVSGTSGTGKTLFSIQFLYN   62 (525)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=94.31  E-value=0.023  Score=51.77  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +.|+|.|.||+||||+.+.|...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999875

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.29  E-value=0.018  Score=55.86  Aligned_cols=27  Identities=30%  Similarity=0.399  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +.+.+++|.|+.||||||+.+.|+.-+
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            456799999999999999999997755

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=94.29  E-value=0.0089  Score=48.78  Aligned_cols=25  Identities=20%  Similarity=0.330  Sum_probs=6.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ....|+|.|.+|+||||+.+.|...
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEEEC-----------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999988653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=94.23  E-value=0.031  Score=46.46  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ...|+|.|.+|+||||+.+.|...
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcC
Confidence            468999999999999999999753

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=94.21  E-value=0.026  Score=49.88  Aligned_cols=22  Identities=27%  Similarity=0.286  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      -.|+|+|.||+||||+.+.|..
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g   32 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLG   32 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            4899999999999999999965

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=94.19  E-value=0.0095  Score=52.87  Aligned_cols=24  Identities=17%  Similarity=0.284  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ...+++|.|++|+||||+.+.|..
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcc
Confidence            356899999999999999999953

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=94.12  E-value=0.015  Score=48.22  Aligned_cols=24  Identities=21%  Similarity=0.387  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+.|+|.|.+|+||||+.+.|...
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            458999999999999999998653

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.09  E-value=0.015  Score=56.12  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +.+.+++|.|+.||||||+.+.|+..+
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            456799999999999999999997655

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.09  E-value=0.029  Score=54.52  Aligned_cols=26  Identities=23%  Similarity=0.170  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+-+++|.|+.||||||+.+.|+..+
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999998643

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=94.08  E-value=0.031  Score=50.85  Aligned_cols=34  Identities=24%  Similarity=0.123  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCceeehH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAG  116 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l-----g~~~i~~d  116 (303)
                      .+.++.|.|+||+||||+|..|+...     .+.+|+.+
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E  111 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE  111 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence            44588999999999999999988764     24566654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=93.13  E-value=0.0091  Score=48.93  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+...|+|.|.+|+||||+...|..
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            4557899999999999999988864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.06  E-value=0.027  Score=54.66  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      -+++|.|+.||||||+.+.|+.-+
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCC
Confidence            579999999999999999997643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	303
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	9e-39
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	3e-34
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	2e-33
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	9e-33
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	4e-31
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	1e-30
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	7e-29
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	8e-29
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	7e-28
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	5e-27
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	1e-26
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	5e-24
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	1e-15
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	7e-15
d1q3ta_	223	c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae	3e-14
d1zaka2	31	g.41.2.1 (A:128-158) Microbial and mitochondrial A	2e-13
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	1e-12
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	7e-11
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	3e-10
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	4e-10
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	9e-10
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	9e-07
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	4e-06
d1akya2	38	g.41.2.1 (A:131-168) Microbial and mitochondrial A	1e-05
d1deka_	241	c.37.1.1 (A:) Deoxynucleoside monophosphate kinase	2e-05
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	1e-04
d1nn5a_	209	c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapi	1e-04
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	2e-04
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	4e-04
d1s3ga2	35	g.41.2.1 (A:126-160) Microbial and mitochondrial A	7e-04
d1zina2	35	g.41.2.1 (A:126-160) Microbial and mitochondrial A	0.001
d2vp4a1	197	c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fr	0.003

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score =  133 bits (334), Expect = 9e-39
 Identities = 130/218 (59%), Positives = 155/218 (71%), Gaps = 31/218 (14%)

Query: 83  EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL 142
           +PLK+MISGAPASGKGTQCELIK KY L HI+AGDLLRAEIAAGSENGKRAKE MEKGQL
Sbjct: 2   DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQL 61

Query: 143 VPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLV 202
           VPDEIVV MVKERL QPD+QENGWLLDGYPRS SQA AL+    +PD FILL+VP++ LV
Sbjct: 62  VPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLV 121

Query: 203 ERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSL 262
           ER                                 FDDTEEKVKLRL+T++ N+E++LS 
Sbjct: 122 ER-------------------------------VVFDDTEEKVKLRLETYYQNIESLLST 150

Query: 263 YEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSALGS 300
           YE++ V+V G    + VFA+ID  L ++LE++   + S
Sbjct: 151 YENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMVSS 188

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  121 bits (303), Expect = 3e-34
 Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 32/207 (15%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           +++++ G P +GKGTQ   + EK G+  I+ G+L R  I  G++ G  AK +++ G LVP
Sbjct: 1   MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKY----GFQPDLFILLEVPEDT 200
            ++   +V +RL+ PD   NG++LDGYPRS+ QA AL +     G   D  +   V E+ 
Sbjct: 61  SDLTNELVDDRLNNPD-AANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEV 119

Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           L+ER+ GR                            R DDT++ +  R+K +      +L
Sbjct: 120 LLERLKGRG---------------------------RADDTDDVILNRMKVYRDETAPLL 152

Query: 261 SLYEDVTVEVNGSVNKEDVFAQIDVAL 287
             Y D    V+     ++VFA+   AL
Sbjct: 153 EYYRDQLKTVDAVGTMDEVFARALRAL 179

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score =  118 bits (297), Expect = 2e-33
 Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 30/205 (14%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + I++ G P +GKGTQ + I EKYG  HI+ GD+ RA I  G+E G +AK  M++G LVP
Sbjct: 1   MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVP 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           DE+ + +V+ERLS+ D  +NG+LLDG+PR++ QA AL +        I   +      E 
Sbjct: 61  DEVTIGIVRERLSKSD-CDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEE 119

Query: 205 VVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE 264
           ++ R                              DD  + V  RL+ + +    +L+ Y+
Sbjct: 120 LIARL---------------------------TADDNPDTVTNRLEVNMNQTAPLLAFYD 152

Query: 265 --DVTVEVNGSVNKEDVFAQIDVAL 287
             +V V +NG  + +DVF  +DV L
Sbjct: 153 SKEVLVNINGQKDIKDVFKDLDVIL 177

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  117 bits (293), Expect = 9e-33
 Identities = 65/208 (31%), Positives = 105/208 (50%), Gaps = 30/208 (14%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           + +++ G P +GKGTQ E I   YG+ HI+ GD+ RA +  G+  G +AK++M++G LVP
Sbjct: 1   MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVP 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           DE+ + +V+ERLS+ D  +NG+LLDG+PR+++QA AL+         +   +  D   + 
Sbjct: 61  DEVTIGIVRERLSKDD-CQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDV 119

Query: 205 VVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE 264
           ++ R                              DD E  V  RL+ +   ++ ++  YE
Sbjct: 120 LMERL---------------------------TADDNEATVANRLEVNMKQMKPLVDFYE 152

Query: 265 D--VTVEVNGSVNKEDVFAQIDVALTNL 290
                  +NG  + E VFA I   L  L
Sbjct: 153 QKGYLRNINGEQDMEKVFADIRELLGGL 180

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  113 bits (282), Expect = 4e-31
 Identities = 73/209 (34%), Positives = 109/209 (52%), Gaps = 25/209 (11%)

Query: 84  PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV 143
              I + G P SGKGTQCE I +KYG  H++ GDLLRAE+++GS  GK   E MEKGQLV
Sbjct: 8   SKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLV 67

Query: 144 PDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVE 203
           P E V+ M+++ +        G+L+DGYPR + Q    ++   QP L + ++   +T+ +
Sbjct: 68  PLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTK 127

Query: 204 RVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY 263
           R                              + R DD EE +K RL+T++   E V++ Y
Sbjct: 128 R-----------------------LLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFY 164

Query: 264 ED--VTVEVNGSVNKEDVFAQIDVALTNL 290
           E   +  +VN   + +DVF+Q+   L  L
Sbjct: 165 EKRGIVRKVNAEGSVDDVFSQVCTHLDTL 193

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score =  111 bits (278), Expect = 1e-30
 Identities = 72/210 (34%), Positives = 115/210 (54%), Gaps = 39/210 (18%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
           ++I++ GAP +GKGTQ + I EKYG+  I+ GD+LRA + +GSE GK+AK+ M+ G+LV 
Sbjct: 1   MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60

Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           DE+V+ +VKER++Q D + NG+LLDG+PR++ QA A+K+ G   D  +  +VP++ +V+R
Sbjct: 61  DELVIALVKERIAQEDCR-NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR 119

Query: 205 VVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE 264
                                             DD EE V+ RL  +H     ++  Y 
Sbjct: 120 -------------------------------IVKDDQEETVRKRLVEYHQMTAPLIGYYS 148

Query: 265 -------DVTVEVNGSVNKEDVFAQIDVAL 287
                      +V+G+    +V A ++  L
Sbjct: 149 KEAEAGNTKYAKVDGTKPVAEVRADLEKIL 178

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 7e-29
 Identities = 52/213 (24%), Positives = 104/213 (48%), Gaps = 32/213 (15%)

Query: 84  PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSEN-GKRAKEHMEKGQL 142
           PL + + G P +GKGTQC  I EKYG  H++AG+LLR E        G+  ++++++G++
Sbjct: 1   PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKI 60

Query: 143 VPDEIVVTMVKERLSQP---DSQENGWLLDGYPRSLSQATALK---KYGFQPDLFILLEV 196
           VP EI ++++K  + Q    ++Q+N +L+DG+PR+                    +  + 
Sbjct: 61  VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 120

Query: 197 PEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
             +  +ER + R                        + + R DD  E ++ R++T+  + 
Sbjct: 121 NNEICIERCLERG-----------------------KSSGRSDDNRESLEKRIQTYLQST 157

Query: 257 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 287
           + ++ LYE+     +++ S + ++VF ++    
Sbjct: 158 KPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIF 190

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score =  107 bits (267), Expect = 8e-29
 Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 25/206 (12%)

Query: 84  PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV 143
            ++ ++ G P +GKGTQ   + + + + H+A GD+LRA +A+GSE GK+ K  M+ G+LV
Sbjct: 3   GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLV 62

Query: 144 PDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVE 203
            DE+V+ ++++ L  P   +NG+LLDG+PR++ QA  L     +    +   +       
Sbjct: 63  SDEMVLELIEKNLETPP-CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDS 121

Query: 204 RVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY 263
            ++ R                              DD ++ +K+RL+ +H     ++  Y
Sbjct: 122 LLIRRIT----------------------GRLIHSDDNKKALKIRLEAYHTQTTPLVEYY 159

Query: 264 ED--VTVEVNGSVNKEDVFAQIDVAL 287
               +   ++ S   + VFA I  A 
Sbjct: 160 SKRGIHSAIDASQTPDVVFASILAAF 185

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (260), Expect = 7e-28
 Identities = 62/209 (29%), Positives = 105/209 (50%), Gaps = 27/209 (12%)

Query: 87  IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI-AAGSENGKRAKEHMEKGQLVPD 145
           I + G P +GKGTQCE + + Y  VH++AGDLLRAE   AGS+ G+  K  +++GQ+VP 
Sbjct: 11  IFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQ 70

Query: 146 EIVVTMVKERLSQPDSQ-ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
           EI + +++  +S      ++ +L+DG+PR + QA + ++   +    +  + PED ++ER
Sbjct: 71  EITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLER 130

Query: 205 VVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE 264
           ++ R                        + + R DD  E +K R  T       V+  +E
Sbjct: 131 LLERG-----------------------KTSGRSDDNIESIKKRFNTFKETSMPVIEYFE 167

Query: 265 --DVTVEVNGSVNKEDVFAQIDVALTNLL 291
                V V    + EDV+  +  A+ + L
Sbjct: 168 TKSKVVRVRCDRSVEDVYKDVQDAIRDSL 196

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score =  102 bits (255), Expect = 5e-27
 Identities = 63/219 (28%), Positives = 96/219 (43%), Gaps = 39/219 (17%)

Query: 80  ATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK 139
           A+   L+  I GAP SGKGT    I + + L H+++GDLLR  +  G+E G  AK  +++
Sbjct: 2   ASARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQ 61

Query: 140 GQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPED 199
           G+L+PD+++  +V       +  +  WLLDG+PR+L QA A     +Q D  I L VP +
Sbjct: 62  GKLIPDDVMTRLVLHE--LKNLTQYNWLLDGFPRTLPQAEA-LDRAYQIDTVINLNVPFE 118

Query: 200 TLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAV 259
            + +R+  R                                  E V  RLK +    E V
Sbjct: 119 VIKQRLTDRP---------------------------------ETVVKRLKAYEAQTEPV 145

Query: 260 LSLYED--VTVEVNGSVNKEDVFAQIDVALTNLLEQRKS 296
           L  Y    V    +G+     ++  +   L   L QR  
Sbjct: 146 LEYYRKKGVLETFSGT-ETNKIWPHVYAFLQTKLPQRSQ 183

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score =  101 bits (252), Expect = 1e-26
 Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 30/212 (14%)

Query: 84  PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV 143
           P  + + G P SGKGTQC  I   +G VH++AGDLLR E  +GS++G+     ++ G++V
Sbjct: 6   PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIV 65

Query: 144 PDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYG---FQPDLFILLEVPEDT 200
           P  + V ++K  +    +Q   +L+DG+PR+     + ++           +  + PE+ 
Sbjct: 66  PSIVTVKLLKNAI--DANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEV 123

Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           + +R++ R                          + R DD  E +K R  T +   + V+
Sbjct: 124 MTQRLLKRG-----------------------ESSGRSDDNIESIKKRFNTFNVQTKLVI 160

Query: 261 SLYE--DVTVEVNGSVNKEDVFAQIDVALTNL 290
             Y   D    +  + +  +V+  ++    ++
Sbjct: 161 DHYNKFDKVKIIPANRDVNEVYNDVENLFKSM 192

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.2 bits (233), Expect = 5e-24
 Identities = 56/207 (27%), Positives = 103/207 (49%), Gaps = 32/207 (15%)

Query: 83  EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL 142
           E +++++ G P +GKGTQ   ++E++   H+A GD+LR++IA G++ G  AK+ M++G L
Sbjct: 1   ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGL 60

Query: 143 VPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLV 202
           V D+I+V M+K+ L+   + +NG++LDG+PR++ QA  L +   +     L +  E  + 
Sbjct: 61  VSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQG-TPLEKAIELKVD 119

Query: 203 ERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSL 262
           + ++  R                                 + +K RL  +H   E ++  
Sbjct: 120 DELLVAR-----------------------------ITNADALKKRLAAYHAQTEPIVDF 150

Query: 263 YE--DVTVEVNGSVNKEDVFAQIDVAL 287
           Y+   +   V+ S     V+A I   L
Sbjct: 151 YKKTGIWAGVDASQPPATVWADILNKL 177

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 71.2 bits (173), Expect = 1e-15
 Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 9/169 (5%)

Query: 87  IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
            +I+G    GK T C+ +  +        GD++   +      G R     ++   +  +
Sbjct: 5   YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV----VGGYRPPWESDELLALTWK 60

Query: 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV 206
            +  +    L   +     ++           T   K       FI+L    + L+ R  
Sbjct: 61  NITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDA 120

Query: 207 GRRLDPVTGKIYHVKYSPPETDEIAARLT-----KRFDDTEEKVKLRLK 250
            R+ D   G+         E+  I  R        +  +  + VK    
Sbjct: 121 LRKKDEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLNDIVKNLKT 169

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 70.1 bits (170), Expect = 7e-15
 Identities = 34/209 (16%), Positives = 58/209 (27%), Gaps = 12/209 (5%)

Query: 87  IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
           I I G   +GKGT C+ + E      + +G + R    A   +            L    
Sbjct: 6   ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHL 65

Query: 147 IVVTMV------KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDT 200
            V  +            +  S E          S   A    +           E+P   
Sbjct: 66  DVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLI 125

Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPETDEI------AARLTKRFDDTEEKVKLRLKTHHH 254
              R +G  + P       +  S  E              +  F+    ++K R     +
Sbjct: 126 ADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRN 185

Query: 255 NVEAVLSLYEDVTVEVNGSVNKEDVFAQI 283
              A L    D  V  + +++ E V  + 
Sbjct: 186 RAVAPLVPAADALVLDSTTLSIEQVIEKA 214

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 68.5 bits (166), Expect = 3e-14
 Identities = 37/225 (16%), Positives = 76/225 (33%), Gaps = 19/225 (8%)

Query: 84  PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV 143
            ++I I G  +SGK T  ++I + +G  ++  G + RA      +N     E +E    +
Sbjct: 3   TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQL-GVEEVEALLAL 61

Query: 144 PDEIVVTMVKERLSQPDSQENGWLLDGYPRS------LSQATALKKY--GFQPDLFILLE 195
            D+  ++  +              +    R       +S   A+ +           + +
Sbjct: 62  LDQHPISFGRSETGDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQ 121

Query: 196 VPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDE------IAARLTKRFDDTEEKVKLRL 249
                +  R +G  + P       +  S  E  E      IA  +    +  ++++  R 
Sbjct: 122 QGGIVMDGRDIGTVVLPQAELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARD 181

Query: 250 KTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQR 294
               H   + L   ED        +N ++V  +I        E+R
Sbjct: 182 YKDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKI----KAEAEKR 222

>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]} Length = 31

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Maize (Zea mays) [TaxId: 4577]

 Score = 61.2 bits (149), Expect = 2e-13
 Identities = 26/31 (83%), Positives = 30/31 (96%)

Query: 207 GRRLDPVTGKIYHVKYSPPETDEIAARLTKR 237
           GRRLDPVTGKIYH+KYSPPE +EIA+RLT+R
Sbjct: 1   GRRLDPVTGKIYHLKYSPPENEEIASRLTQR 31

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 63.1 bits (152), Expect = 1e-12
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 41/201 (20%)

Query: 84  PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV 143
            + I+I+G P +GK +  E+I  +           L        EN    +   E    +
Sbjct: 5   GINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVK------ENHFYTEYDTELDTHI 58

Query: 144 PDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVE 203
            +E     + + +          ++D +   L              + ++L    + L E
Sbjct: 59  IEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPE-------RWFHMVVVLHTSTEVLFE 111

Query: 204 RVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY 263
           R+  R            +YS  +  E                 +  +      E     Y
Sbjct: 112 RLTKR------------QYSEAKRAE----------------NMEAEIQCICEEEARDAY 143

Query: 264 EDVTVEVNGSVNKEDVFAQID 284
           ED  V V  +   E + A ++
Sbjct: 144 EDDIVLVRENDTLEQMAATVE 164

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 57.4 bits (137), Expect = 7e-11
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 87  IMISGAPASGKGTQC-ELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD 145
           I+  G P SGK T   E I +  G  +I   D  ++ +A      +   ++ +K + +  
Sbjct: 5   ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA---HEERDEYKYTKKKEGIVT 61

Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYG---FQPDLFILLEVPEDTLV 202
            +     K  L   D    G ++     +  +  A + +           + +VP   LV
Sbjct: 62  GMQFDTAKSILYGGD-SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELV 120

Query: 203 ERVVGRRLDPVTGKIYH 219
           +R   R    V   +  
Sbjct: 121 KRNSKRGTKAVPIDVLR 137

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 56.6 bits (135), Expect = 3e-10
 Identities = 29/211 (13%), Positives = 53/211 (25%), Gaps = 39/211 (18%)

Query: 87  IMISGAPASGKGTQCELIKEKYGL-----VHIAAGDLLRAEIAAGSENGKRAKEHM---E 138
            +++G P  GK T    +KE           I  GD + A          R +      E
Sbjct: 4   GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVE 63

Query: 139 KGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYG------FQPDLFI 192
           K + +  +    + +E  +     E    +D +    + +  L            P +  
Sbjct: 64  KQKKLQIDAAKGIAEEARAG---GEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIF 120

Query: 193 LLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTH 252
           LLE     ++ R                  +    D     +     +            
Sbjct: 121 LLEADPKIILSRQKRDT-------------TRNRNDYSDESVILETINFARYAATASAVL 167

Query: 253 HHNVEAVLSLYEDVTVEVNGSVNKEDVFAQI 283
                        V V VN   +      +I
Sbjct: 168 AG---------STVKVIVNVEGDPSIAANEI 189

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 4e-10
 Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 29/184 (15%)

Query: 86  KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD 145
            I+++G P  GK T  + +  K GL +I  GDL R E      + +     ++      +
Sbjct: 6   NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILD------E 59

Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV 205
           + VV  +  ++ +     +    D +P                 +  +L    + L ER+
Sbjct: 60  DRVVDELDNQMREGGVIVDYHGCDFFPER------------WFHIVFVLRTDTNVLYERL 107

Query: 206 VGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRL-----KTHHHNVEAVL 260
             R      G          + +       +     +E++  +L     +   +NV+ +L
Sbjct: 108 ETR------GYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQIL 161

Query: 261 SLYE 264
              E
Sbjct: 162 KWIE 165

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 55.0 bits (131), Expect = 9e-10
 Identities = 27/209 (12%), Positives = 64/209 (30%), Gaps = 39/209 (18%)

Query: 87  IMISGAPASGKGTQCELIKEKYGL-----VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ 141
           ++++G P  G  T  +L  +           ++ G ++        EN    ++ M K  
Sbjct: 4   VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK--EENLVSDRDQMRKMD 61

Query: 142 LVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALK------KYGFQPDLFILLE 195
               + +  M   ++++   +E+   +D +    +    L            PDL I++E
Sbjct: 62  PETQKRIQKMAGRKIAEMA-KESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVE 120

Query: 196 VPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHN 255
              D ++ R +                              R  DT   ++     +   
Sbjct: 121 TTGDEILMRRMSDETR------------------------VRDLDTASTIEQHQFMNRCA 156

Query: 256 VEAVLSLYE-DVTVEVNGSVNKEDVFAQI 283
             +   L    V +  N +   +    ++
Sbjct: 157 AMSYGVLTGATVKIVQNRNGLLDQAVEEL 185

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 46.1 bits (108), Expect = 9e-07
 Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 21/175 (12%)

Query: 87  IMISGAPASGKGTQCELIKEKYGLVHI-AAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD 145
           +++SG P SGK T  E +    G+  +    D L   I  G  +    + H +       
Sbjct: 7   LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRM---- 62

Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV 205
             ++ +  +   +   +    +LDG  R             +P  +I+L       +ER 
Sbjct: 63  --IMQIAADVAGRYAKEGYFVILDGVVRPDWLPAF--TALARPLHYIVLRTTAAEAIERC 118

Query: 206 VGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
           + R  D ++  +              A L  +F D        L     + +  L
Sbjct: 119 LDRGGDSLSDPLVV------------ADLHSQFADLGAFEHHVLPVSGKDTDQAL 161

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 44.3 bits (103), Expect = 4e-06
 Identities = 21/149 (14%), Positives = 36/149 (24%), Gaps = 11/149 (7%)

Query: 87  IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
            ++ G   SGK      +  +     +    L          +G+   +   K  L    
Sbjct: 9   YVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALN 68

Query: 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV 206
                +         + N   L            L + G     FI L+   D +  R+ 
Sbjct: 69  DAAFAM--------QRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLK 120

Query: 207 GRR---LDPVTGKIYHVKYSPPETDEIAA 232
            R+                  P  DE   
Sbjct: 121 ARKGHFFKTQMLVTQFETLQEPGADETDV 149

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 38

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.3 bits (92), Expect = 1e-05
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)

Query: 207 GRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDD 240
           GR + P +G+ YH  ++PP+     D     L +R DD
Sbjct: 1   GRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDD 38

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 21/243 (8%), Positives = 50/243 (20%), Gaps = 40/243 (16%)

Query: 85  LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI-AAGSENGKRAKEHMEKGQLV 143
             I +SG   SGK T  + I   Y  V       ++  +  A               +  
Sbjct: 2   KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKEF 61

Query: 144 PD----------------------------EIVVTMVKERLSQPDSQENGWLLDGYPRSL 175
                                                         +   ++       +
Sbjct: 62  EGIDYDRETNLNLTKLEVITIMEQAFCYLNGKSPIKGVFVFDDEGKESVNFVAFNKITDV 121

Query: 176 SQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVT--------GKIYHVKYSPPET 227
                 +    +    +  ++  +        +                           
Sbjct: 122 INNIEDQWSVRRLMQALGTDLIVNNFDRMYWVKLFALDYLDKFNSGYDYYIVPDTRQDHE 181

Query: 228 DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVAL 287
            + A  +         +   +    H     +     D+ +  +GS   E++F++I   L
Sbjct: 182 MDAARAMGATVIH-VVRPGQKSNDTHITEAGLPIRDGDLVITNDGS--LEELFSKIKNTL 238

Query: 288 TNL 290
             L
Sbjct: 239 KVL 241

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 22/178 (12%), Positives = 46/178 (25%), Gaps = 36/178 (20%)

Query: 83  EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL 142
            P  ++  G P +GK T  +      G VH+    L   +           +  + +G+ 
Sbjct: 13  NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRC-----VSSCQAALRQGK- 66

Query: 143 VPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLV 202
                   +V +  +        ++               K    P          +   
Sbjct: 67  -------RVVIDNTNPDVPSRARYI------------QCAKDAGVPCRCFNFCATIEQAR 107

Query: 203 ERVVGRRLDPVTGKI--------YHVKYSPPETDEIAARLTK---RFDDTEEKVKLRL 249
                R +   +           Y  ++ PP   E    + +   R  +  +    RL
Sbjct: 108 HNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEILEIPFRLQEHLDPALQRL 165

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 36/226 (15%), Positives = 59/226 (26%), Gaps = 35/226 (15%)

Query: 87  IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
           I++ G   +GK TQ   + E        A   L       +E GK    +++K   V D 
Sbjct: 6   IVLEGVDRAGKSTQSRKLVEALCAAGHRA--ELLRFPERSTEIGKLLSSYLQKKSDVEDH 63

Query: 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV 206
            V  +      +        L                   Q    ++       +     
Sbjct: 64  SVHLLFSANRWEQVPLIKEKL------------------SQGVTLVVDRYAFSGVAFTGA 105

Query: 207 GRRLDPVTGKIYHVKYSPPET-------DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAV 259
                    K   V    P+           AA+      +  E    + +         
Sbjct: 106 KENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERAL----RCF 161

Query: 260 LSLYEDVT---VEVNGSVNKEDVFAQIDVALTNLLEQRK-SALGSL 301
             L +D T     V+ S + E V   I V   + +       LG L
Sbjct: 162 HQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATATEKPLGEL 207

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 21/213 (9%), Positives = 50/213 (23%), Gaps = 34/213 (15%)

Query: 86  KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD 145
            + I G  +SGK      +   +                                     
Sbjct: 9   TVAILGGESSGKSVLVNKLAAVFNTTSAWE---------------------------YGR 41

Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV 205
           E V   +          +   +  G+ R +  A          D   +      T    +
Sbjct: 42  EFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAVRHSHKIAFIDTDFI-----TTQAFCI 96

Query: 206 VGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHN-VEAVLSLYE 264
                          +Y    T  +        D        + +      ++ +L  Y+
Sbjct: 97  QYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYK 156

Query: 265 DVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSA 297
              +E+    +  D + Q+   +  +L + + +
Sbjct: 157 VPYIEIESP-SYLDRYNQVKAVIEKVLNEEEIS 188

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 25/174 (14%), Positives = 49/174 (28%), Gaps = 11/174 (6%)

Query: 75  QVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAK 134
            +LA  T   L + I G   SGK T    + +      I +  +   +        +   
Sbjct: 13  TILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGI-SVCVFHMDDHIVERAKRYHT 71

Query: 135 EHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILL 194
            + E  +    +  V  +  +L +     +   L  Y           +        + L
Sbjct: 72  GNEEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDH---------ETDTHSKRTVYL 122

Query: 195 EVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLR 248
              +  ++E  V  +          V Y     +   AR   +     +K   R
Sbjct: 123 SDSDMIMIE-GVFLQRKEWRPFFDFVVYLDCPREIRFARENDQVKQNIQKFINR 175

>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]} Length = 35

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus globisporus [TaxId: 1459]

 Score = 34.2 bits (79), Expect = 7e-04
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 207 GRRLDPVTGKIYHVKYSPPETDEI 230
           GRR+  V G  YH+ ++PP+ +  
Sbjct: 1   GRRICKVCGTSYHLLFNPPQVEGK 24

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 35

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 33.8 bits (78), Expect = 0.001
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 207 GRRLDPVTGKIYHVKYSPPETDEI 230
           GRR+    G  YH+ + PP    +
Sbjct: 1   GRRICRNCGATYHLIFHPPAKPGV 24

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 197

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 25/186 (13%), Positives = 49/186 (26%), Gaps = 15/186 (8%)

Query: 83  EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL 142
           +P  ++I G   SGK T     ++    + +                       +E    
Sbjct: 8   QPFTVLIEGNIGSGKTTYLNHFEKYKNDICL-------LTEPVEKWRNVNGVNLLELMYK 60

Query: 143 VPDEIVVTMV----KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPE 198
            P +  +          L    +  N  L        S      +   +           
Sbjct: 61  DPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNT 120

Query: 199 DTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLR-LKTHHHNVE 257
                + +   +      I +++ SP   +    R+ +R    E  V L+ L+  H   E
Sbjct: 121 LEEWYKFIEESIHVQADLIIYLRTSP---EVAYERIRQRARSEESCVPLKYLQELHELHE 177

Query: 258 AVLSLY 263
             L   
Sbjct: 178 DWLIHQ 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	303
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	100.0
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.97
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.97
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.97
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.97
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.97
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.97
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.96
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.96
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.96
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.96
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.96
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.77
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.76
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.75
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.73
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.7
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.68
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.67
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.66
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.65
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.65
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.65
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.64
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.64
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.63
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.62
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.56
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	99.54
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.53
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.53
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.47
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.47
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.45
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	99.44
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.44
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.41
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	99.32
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	99.32
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.23
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.22
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.21
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.17
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	99.1
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.09
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	99.08
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.0
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.97
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.76
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	98.73
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	98.73
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	98.67
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.59
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.52
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.49
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	98.45
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	98.28
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.27
d1zaka2	31	Microbial and mitochondrial ADK, insert "zinc fing	98.07
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.98
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.95
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.9
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.86
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.76
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.76
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.73
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.72
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.71
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.71
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.67
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	97.63
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.59
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.47
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.42
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.38
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.38
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.37
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.35
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.26
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.17
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.17
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.16
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.15
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.14
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.09
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.06
d1okkd2	207	GTPase domain of the signal recognition particle r	97.05
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.01
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.99
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.98
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.95
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.94
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.94
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.83
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.8
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.76
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.69
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.65
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.63
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.6
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.54
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.52
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.49
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.48
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.48
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.47
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.47
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.45
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.44
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.41
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.39
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.38
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.37
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.36
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.35
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.34
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.34
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.32
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.27
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.24
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	96.22
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.19
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.14
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.12
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.11
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.07
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.07
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.06
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.06
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.97
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.96
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.95
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.93
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.92
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.92
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.9
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	95.89
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.87
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.85
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.83
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.81
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.81
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.81
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.8
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.78
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.77
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.74
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.72
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.71
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.7
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.67
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.66
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.65
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.64
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.64
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.63
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.62
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.62
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.59
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.57
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.57
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.56
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.53
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.5
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.47
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.47
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.47
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.46
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.43
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.43
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.43
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.37
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.35
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.32
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.3
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.28
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.28
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.25
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.19
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.17
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.15
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.12
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.12
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.12
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.12
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.08
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.08
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.06
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.06
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.03
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	95.03
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.03
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.98
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.95
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.91
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	94.9
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.89
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.84
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.82
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.77
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.75
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	94.73
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.72
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.63
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.58
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	94.54
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.48
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.48
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	94.46
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.17
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.13
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.11
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	94.08
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.02
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.99
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	93.93
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	93.83
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.78
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.77
d1ak2a2	30	Microbial and mitochondrial ADK, insert "zinc fing	93.76
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.7
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.63
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.62
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.5
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.38
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.3
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.08
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	93.01
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	92.86
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	92.71
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.68
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	92.62
d1e4va2	35	Microbial and mitochondrial ADK, insert "zinc fing	92.6
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	92.58
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	92.41
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	92.32
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	91.77
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.73
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	91.66
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	91.44
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	91.33
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	91.26
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	91.23
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.2
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	91.11
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	90.99
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	90.88
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	90.76
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	90.75
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	90.7
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	90.5
d1zina2	35	Microbial and mitochondrial ADK, insert "zinc fing	90.33
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	90.16
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	89.81
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	89.76
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	89.71
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	89.61
d1s3ga2	35	Microbial and mitochondrial ADK, insert "zinc fing	89.6
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	89.46
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.71
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.61
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	88.56
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	87.97
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	87.83
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	87.67
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	87.55
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	87.53
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	87.53
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	87.25
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	87.1
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	86.86
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	86.54
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	86.38
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	86.19
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	85.91
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.57
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	85.5
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	85.26
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	84.83
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	84.71
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	84.35
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.98
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.93
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	83.89
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	82.74
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.99
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	80.25
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	80.11

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=5e-32  Score=225.69  Aligned_cols=188  Identities=69%  Similarity=1.026  Sum_probs=170.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      +||+|+|.|||||||||+|+.|+++||+.+|++++++++......+....+...+..|...+.+.....+...+....+.
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   81 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ   81 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhcccc
Confidence            68899999999999999999999999999999999999999888888899999999999999888777777666665555


Q ss_pred             CCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcH
Q 022042          163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE  242 (303)
Q Consensus       163 ~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~  242 (303)
                      .+++|+||||++..++..|...+..|+.+|+|+++++++.+|+..|.                               .+
T Consensus        82 ~~~~vid~~~~~~~q~~~l~~~~~~p~~~i~L~~~~e~l~~R~~~~~-------------------------------~~  130 (189)
T d1zaka1          82 ENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVFDD-------------------------------TE  130 (189)
T ss_dssp             HTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTTC-------------------------------CT
T ss_pred             cCcEEeeccchhhHHHhhhhhcccccchheeechhhhhhhhhccccc-------------------------------hH
Confidence            67899999999999999999998899999999999999999986653                               24


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHhhhhccccc
Q 022042          243 EKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSALGSL  301 (303)
Q Consensus       243 e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~~~~~~~~~  301 (303)
                      +.+++|+..|+++..++.++|++.++.||+++++++|+++|.++|..+++++.+.++++
T Consensus       131 e~~~~rl~~y~~~~~~l~~~y~~~~~~Id~~~~idev~~~I~~~l~~il~~~~~~~~~~  189 (189)
T d1zaka1         131 EKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMVSST  189 (189)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHHHhhhhhhhccCC
Confidence            56788999999999999999998999999999999999999999999999999888765

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=4.8e-31  Score=220.67  Aligned_cols=186  Identities=39%  Similarity=0.664  Sum_probs=170.8

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      .+++++|+|.|||||||||+|+.|+++||+.+|++++++++.....+..+..+.+.+..+..++++.+..++..++....
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   84 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKV   84 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhcc
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             CCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042          161 SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD  240 (303)
Q Consensus       161 ~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d  240 (303)
                      +..+++|+||||++..|+..+......++.+++++++.+++.+|...+                       .+...|.++
T Consensus        85 ~~~~g~ildg~pr~~~qa~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----------------------~~~~~r~~d  141 (194)
T d3adka_          85 DTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLKR-----------------------GETSGRVDD  141 (194)
T ss_dssp             TTCSCEEEESCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHH-----------------------HHHHTCCCC
T ss_pred             cccccceeeeccchhHHHHHHHHHhCCccchhccccchhhhHhHhhhh-----------------------cccccCCcc
Confidence            778899999999999999999998888999999999999999998765                       234567778


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          241 TEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       241 ~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                      .++.+.+|++.|+++..++.++|..  .++.||+++++++|+++|.+.|+.
T Consensus       142 ~~e~i~~R~~~y~~~~~~~~~~y~~~~~~~~Id~~~s~~eV~~~I~~~i~~  192 (194)
T d3adka_         142 NEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTHLDT  192 (194)
T ss_dssp             CSTTHHHHHHHHHHHTHHHHHHHTTTTCEEEEECCSCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            8889999999999999999999976  578899999999999999998865

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.97  E-value=2.2e-30  Score=216.29  Aligned_cols=185  Identities=26%  Similarity=0.534  Sum_probs=162.8

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCC
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP  159 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~  159 (303)
                      .+.+|.+|+|.|||||||||+|+.|+++||+.++++++++++....+...+..+...+..+...++......+..++...
T Consensus         2 ~~~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (194)
T d1qf9a_           2 EKSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN   81 (194)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhhh
Confidence            35688999999999999999999999999999999999999999999999999999999999999998888887777664


Q ss_pred             CCCCCcEEEcCCCCCHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhcc
Q 022042          160 DSQENGWLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTK  236 (303)
Q Consensus       160 ~~~~~~~Vldg~p~~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~  236 (303)
                      .  .+++|+||||++..++..+..   ....|+++|||++|++++.+|+.+|..                       ...
T Consensus        82 ~--~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~-----------------------~~~  136 (194)
T d1qf9a_          82 Q--GKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE-----------------------SSG  136 (194)
T ss_dssp             T--TCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT-----------------------TSC
T ss_pred             h--cCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhcc-----------------------ccc
Confidence            4  478999999999999988765   345689999999999999999987742                       224


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          237 RFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       237 r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                      +.++..+.+++|++.|+....++.++|+.  .+++||+++++++|+++|.++|+.
T Consensus       137 ~~~d~~e~~~~Rl~~y~~~~~~~~~~y~~~~~~~~Id~~~~ieeV~~~I~~ii~~  191 (194)
T d1qf9a_         137 RSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             CTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            55678899999999999999999988864  678899999999999999998875

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.4e-30  Score=214.96  Aligned_cols=171  Identities=42%  Similarity=0.752  Sum_probs=156.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |+|+|.|||||||||+|+.|+++||+.++++++++++....+++.+..+.+++..+..++++.+..++.+.+....+ .+
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~-~~   79 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDC-RN   79 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGG-GG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhccccc-cc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999888877655 57


Q ss_pred             cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHH
Q 022042          165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEK  244 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~  244 (303)
                      ++|+||||++..++..+.+.+..|+++|||++|++++.+|+..|.                               .++.
T Consensus        80 g~i~~g~pr~~~~~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~~-------------------------------~~e~  128 (179)
T d1e4va1          80 GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVKDD-------------------------------QEET  128 (179)
T ss_dssp             CEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTC-------------------------------SHHH
T ss_pred             ceeecccccchHHhhhhhhccCCceEEEEeccchhhhhhhhcccc-------------------------------cHHH
Confidence            899999999999999999999999999999999999999997763                               3678


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc-------ceEEEcCCCCHHHHHHHHHHHH
Q 022042          245 VKLRLKTHHHNVEAVLSLYED-------VTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       245 ~~~r~~~~~~~~~~~~~~~~~-------~~~~Id~~~s~eev~~~I~~~l  287 (303)
                      +++|+..|++...++.++|..       .++.||+++++++|+++|.++|
T Consensus       129 i~~r~~~y~~~~~~v~~~y~~~~~~~~~~~~~IDa~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         129 VRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  178 (179)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCCcEEEEECCCCHHHHHHHHHHHh
Confidence            899999999988888887753       5789999999999999998876

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.97  E-value=8e-30  Score=212.31  Aligned_cols=181  Identities=34%  Similarity=0.641  Sum_probs=162.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ  162 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~  162 (303)
                      ++++|+|.|||||||||+|+.||++||+.||++++++++....++..+..+..++..|..++++.+..++...+..... 
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~-   80 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC-   80 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG-
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhccccc-
Confidence            4567889999999999999999999999999999999999999999999999999999999999999999998877655 


Q ss_pred             CCcEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCC
Q 022042          163 ENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF  238 (303)
Q Consensus       163 ~~~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~  238 (303)
                      .++||+||||++..++..|..    .+..+.++++|+++.+.+.+|+..|..                          +.
T Consensus        81 ~~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~--------------------------~~  134 (190)
T d1ak2a1          81 KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLI--------------------------HS  134 (190)
T ss_dssp             TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEE--------------------------CC
T ss_pred             cCceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCC--------------------------CC
Confidence            689999999999999988765    456788999999999999999998852                          23


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          239 DDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                      ++..+.+++|++.|+++..++.++|.+  .++.||+++++++|+++|.++|.+.
T Consensus       135 d~~~e~i~~R~~~y~~~~~p~~~~y~~~~~~~~Id~~~s~eeV~~~I~~~l~k~  188 (190)
T d1ak2a1         135 DDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA  188 (190)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence            566889999999999999999999975  5778999999999999999998763

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=3.7e-30  Score=212.72  Aligned_cols=176  Identities=37%  Similarity=0.655  Sum_probs=160.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |+|+|.|+|||||||+|+.|+++||+.+|++++++++.....++.+..+..++..+..++++....++...+....+ ..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~   79 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDA-AN   79 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGG-TT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCccc-cc
Confidence            58999999999999999999999999999999999999888899999999999999999999999999998887766 57


Q ss_pred             cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042          165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD  240 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d  240 (303)
                      +||+||||++..++..|..    .+..|+++|+|+++.+++.+|+.+|.                           |.++
T Consensus        80 ~~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~---------------------------r~~~  132 (181)
T d2cdna1          80 GFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG---------------------------RADD  132 (181)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC---------------------------CTTC
T ss_pred             cEEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccc---------------------------cccc
Confidence            8999999999999888765    45689999999999999999999874                           3356


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHH
Q 022042          241 TEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       241 ~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                      ..+.+.+|++.|+++..++.++|.+.++.||+++++++|+++|.++|.
T Consensus       133 ~~~~i~~rl~~y~~~~~~l~~~y~~~~~~Id~~~s~eeV~~~I~~~l~  180 (181)
T d2cdna1         133 TDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFARALRALG  180 (181)
T ss_dssp             SHHHHHHHHHHHHHHTTTHHHHTTTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCeEEEECCCCHHHHHHHHHHHhC
Confidence            788999999999999999999999999999999999999999998764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.97  E-value=8e-30  Score=212.53  Aligned_cols=178  Identities=36%  Similarity=0.624  Sum_probs=158.5

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      +.++|+|+|.|+|||||||+|+.|+++||+.+|++++++++.+...++.+..+.+.+..+..++++.+..++...+....
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~   82 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLT   82 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhhh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999988887654


Q ss_pred             CCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042          161 SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD  240 (303)
Q Consensus       161 ~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d  240 (303)
                        ..+||+||||++..|++.|++ ...++.+|+|+++.+++.+|+..|                                
T Consensus        83 --~~~~ildGfPr~~~q~~~l~~-~~~~~~vi~L~v~~~~l~~R~~~r--------------------------------  127 (189)
T d2ak3a1          83 --QYNWLLDGFPRTLPQAEALDR-AYQIDTVINLNVPFEVIKQRLTDR--------------------------------  127 (189)
T ss_dssp             --TSCEEEESCCCSHHHHHHHHT-TCCCCEEEEEECCHHHHHHHHTGS--------------------------------
T ss_pred             --hcCcccccccchhhHHHHhhh-cCcceEEEEEeccchhhhhhcccc--------------------------------
Confidence              468999999999999998875 457899999999999999998655                                


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHHHHHhhh
Q 022042          241 TEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLLEQRK  295 (303)
Q Consensus       241 ~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~~l~~~~  295 (303)
                       .+.+.+|++.|.++..++.++|..  .++.||++ +.++|+++|.+.|...+.++.
T Consensus       128 -~e~~~kr~~~y~~~~~~v~~~Y~~~~~l~~idg~-~~~eV~~~I~~~i~~~l~~~~  182 (189)
T d2ak3a1         128 -PETVVKRLKAYEAQTEPVLEYYRKKGVLETFSGT-ETNKIWPHVYAFLQTKLPQRS  182 (189)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHHTTSCBCS
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCC-ChHHHHHHHHHHHHHHhhccc
Confidence             567889999999999999999965  67889987 579999999999987776543

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.7e-29  Score=207.65  Aligned_cols=185  Identities=32%  Similarity=0.624  Sum_probs=160.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHc-CCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCC-C
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA-GSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP-D  160 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~-~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~-~  160 (303)
                      +.++|+|.|||||||||+|+.|+++||+.+|++++++|..... ++..+..+..++..+...++......+...+... .
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVK   86 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHhhhc
Confidence            3468999999999999999999999999999999999986654 6789999999999999999888777775554432 2


Q ss_pred             CCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042          161 SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD  240 (303)
Q Consensus       161 ~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d  240 (303)
                      ....++|+||||++..|+..+......++.+++|+++++++++|+.+|.                       +...|.++
T Consensus        87 ~~~~~~vl~g~p~~~~q~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~-----------------------~~~~r~~~  143 (196)
T d1ukza_          87 ANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERG-----------------------KTSGRSDD  143 (196)
T ss_dssp             TTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH-----------------------HHHCCTTC
T ss_pred             cCCCceeeeccchhHHHHHHHHHhccccceeeccCCCHHHHHHHHHhcc-----------------------ccccccch
Confidence            2357899999999999999999988899999999999999999998763                       34456778


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          241 TEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       241 ~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                      ..+.+++|++.|+++..++.++|+.  .++.||+++++++|+++|.++|++.
T Consensus       144 ~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~Id~~~s~eeV~~~I~~~i~~~  195 (196)
T d1ukza_         144 NIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDS  195 (196)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence            8999999999999999999999975  6789999999999999999999864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.96  E-value=3.2e-28  Score=201.23  Aligned_cols=172  Identities=41%  Similarity=0.755  Sum_probs=155.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |+|+|.|+|||||||+|+.|+++||+.+++++++++......++.+..+...+..|..+++.....++..++....+ ..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~~-~~   79 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDC-DN   79 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSSTT-SS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhccccc-cc
Confidence            57999999999999999999999999999999999999888999999999999999999999999999999987776 67


Q ss_pred             cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042          165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD  240 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d  240 (303)
                      +||+||||++..++..|.+    .+..+.++++|+++.+.+.+|+..+                               +
T Consensus        80 ~~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~-------------------------------~  128 (182)
T d1s3ga1          80 GFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTAD-------------------------------D  128 (182)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT-------------------------------C
T ss_pred             ceeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhcc-------------------------------c
Confidence            8999999999999988765    3556788999999999999997543                               3


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHH
Q 022042          241 TEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       241 ~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                      .++.+.+|++.|+++..++.++|..  .++.||++.++++|+++|.++|+
T Consensus       129 ~~e~i~~R~~~y~~~~~~i~~~y~~~~~~~~Id~~~~~eeV~~~I~~il~  178 (182)
T d1s3ga1         129 NPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVILQ  178 (182)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence            4778999999999999999999975  78899999999999999988875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-28  Score=205.24  Aligned_cols=183  Identities=30%  Similarity=0.581  Sum_probs=157.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHc-CCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC--
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA-GSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD--  160 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~-~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~--  160 (303)
                      |++|+|.|||||||||+|+.|+++||+.||++++++|..... .++.+..+...+..+..++++.....+...+....  
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   80 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   80 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchh
Confidence            789999999999999999999999999999999999987764 57888999999999999999988888776664421  


Q ss_pred             -CCCCcEEEcCCCCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhcc
Q 022042          161 -SQENGWLLDGYPRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTK  236 (303)
Q Consensus       161 -~~~~~~Vldg~p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~  236 (303)
                       ....+|++||||++..++..+...   ...++.+++++++.+++.+|+.+|..                       ...
T Consensus        81 ~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~-----------------------~~~  137 (194)
T d1teva_          81 NAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK-----------------------SSG  137 (194)
T ss_dssp             CTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH-----------------------TSS
T ss_pred             hhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCC-----------------------ccc
Confidence             235789999999999999887653   34578899999999999999998842                       234


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          237 RFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       237 r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                      |.++..+.+.+|++.|+++..++.++|..  .++.||+++++++|+++|.++|++
T Consensus       138 r~~~~~e~i~~r~~~y~~~~~~l~~~y~~~~~~~~IDa~~s~eeV~~~I~~il~k  192 (194)
T d1teva_         138 RSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  192 (194)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            66778899999999999999999999875  678899999999999999998864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.8e-28  Score=201.31  Aligned_cols=171  Identities=35%  Similarity=0.625  Sum_probs=152.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      .|+|+|.|+|||||||+|+.|+++||+.+|++++++++.....+..+..++..+..+..+++......+..++....+..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACK   81 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCcccc
Confidence            36788999999999999999999999999999999999999999999999999999999999999888888887776667


Q ss_pred             CcEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042          164 NGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD  239 (303)
Q Consensus       164 ~~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~  239 (303)
                      .|||+||||++..++..+..    .+..|+++|+|+++++++.+|+..|                               
T Consensus        82 ~g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~-------------------------------  130 (180)
T d1akya1          82 NGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNA-------------------------------  130 (180)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSH-------------------------------
T ss_pred             CCEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhccccc-------------------------------
Confidence            89999999999999876543    5678999999999999999998543                               


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHH
Q 022042          240 DTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       240 d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                         +.+.+|++.|+++..++.++|..  .++.||+++++++|+++|.+.|.
T Consensus       131 ---~~~~~r~~~y~~~~~~v~~~y~~~~~~~~Id~~~~~eeV~~~I~~~l~  178 (180)
T d1akya1         131 ---DALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG  178 (180)
T ss_dssp             ---HHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred             ---ccccchHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence               45678899999999999998875  68889999999999999998874

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=1.7e-27  Score=196.24  Aligned_cols=175  Identities=40%  Similarity=0.716  Sum_probs=157.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      |+|+|.|+|||||||+|+.|+++||+.+|+++++++......++.+..+...+..+..+++.....++.+.+....+ ..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   79 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDC-QN   79 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGG-TT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchhh-hc
Confidence            57999999999999999999999999999999999999888999999999999999999999999999888877666 57


Q ss_pred             cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042          165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD  240 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d  240 (303)
                      +++++++|....+...+..    .+..++++++|+++.+.+.+|+..+                               +
T Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~-------------------------------~  128 (182)
T d1zina1          80 GFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTAD-------------------------------D  128 (182)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT-------------------------------C
T ss_pred             CcccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccc-------------------------------c
Confidence            8999999999888776655    3567899999999999999998765                               3


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042          241 TEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLL  291 (303)
Q Consensus       241 ~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~~l  291 (303)
                      .++.+++|++.|+++..++.++|..  .++.||+++++++|+++|.++|..+.
T Consensus       129 ~~e~~~~Rl~~y~~~~~~l~~~y~~~~~~~~Id~~~~~eeV~~~I~~~L~~l~  181 (182)
T d1zina1         129 NEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLGGLA  181 (182)
T ss_dssp             SHHHHHHHHHHHHHHHTHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhcc
Confidence            3778999999999999999999875  68899999999999999999998765

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.77  E-value=4.5e-18  Score=138.04  Aligned_cols=163  Identities=13%  Similarity=0.110  Sum_probs=101.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCCc
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG  165 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~  165 (303)
                      .|+|+|+|||||||+|+.||++||+++++.|+++.+..      |..+.+++....   ...+.......+..... ...
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~------g~~i~ei~~~~g---~~~~~~~~~~~l~~~~~-~~~   73 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS------GMTVADVVAAEG---WPGFRRRESEALQAVAT-PNR   73 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH------CSCHHHHHHHHH---HHHHHHHHHHHHHHHCC-SSE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhh------hhhhhhhhcccc---hHHHHHHHHHHHHhhcc-ccc
Confidence            46788999999999999999999999999999986642      223333333210   12222232333333222 344


Q ss_pred             EEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHH
Q 022042          166 WLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEE  243 (303)
Q Consensus       166 ~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e  243 (303)
                      ++..+  .+........+...+    .+|||+++.+++.+|+..|....                       .|......
T Consensus        74 ~~~~~~~~~~~~~~~~~l~~~~----~~v~L~~~~e~l~~Rl~~~~~~~-----------------------~r~~~~~~  126 (170)
T d1e6ca_          74 VVATGGGMVLLEQNRQFMRAHG----TVVYLFAPAEELALRLQASLQAH-----------------------QRPTLTGR  126 (170)
T ss_dssp             EEECCTTGGGSHHHHHHHHHHS----EEEEEECCHHHHHHHHHHHHCSC-----------------------CCCCTTHH
T ss_pred             eecccccchhhhHHHHhhhccc----eeEEEecCchhHHHHHhhccccc-----------------------cCCCCCCC
Confidence            55543  334444445565543    79999999999999997653211                       12223334


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHH
Q 022042          244 KVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       244 ~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l  287 (303)
                      ...+.++....+..++++.+.+  ++||+++++++++++|.+.|
T Consensus       127 ~~~~~~~~~~~er~~lY~~~a~--~~Id~~~~~~eiv~~Ii~~L  168 (170)
T d1e6ca_         127 PIAEEMEAVLREREALYQDVAH--YVVDATQPPAAIVCELMQTM  168 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCS--EEEETTSCHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHcCC--EEEcCCCCHHHHHHHHHHHc
Confidence            4444555555555565544433  56889999999998887765

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.2e-17  Score=140.10  Aligned_cols=178  Identities=21%  Similarity=0.149  Sum_probs=106.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH----------
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV----------  149 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~----------  149 (303)
                      ++++|+|+|++||||||+++.|+++|   |+.++.+.     +...+++.+..+++++.....+......          
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~-----~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~   76 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR-----FPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQ   76 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE-----SSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe-----CCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHHH
Confidence            56799999999999999999999987   55554321     0011223344444444443333322211          


Q ss_pred             -HHHHHHHcCCCCCCCcEEEcCCCC------------CHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042          150 -TMVKERLSQPDSQENGWLLDGYPR------------SLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK  216 (303)
Q Consensus       150 -~~l~~~l~~~~~~~~~~Vldg~p~------------~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~  216 (303)
                       ..+...+..    +..+|+|.|..            .......+......||++|||++|++++.+|...++.      
T Consensus        77 ~~~i~~~l~~----g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~~------  146 (209)
T d1nn5a_          77 VPLIKEKLSQ----GVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHE------  146 (209)
T ss_dssp             HHHHHHHHHT----TCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----C------
T ss_pred             HHhHHHHhhc----ccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhccccc------
Confidence             222333332    56688887531            2222232333456799999999999999999765531      


Q ss_pred             eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHhhhh
Q 022042          217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKS  296 (303)
Q Consensus       217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~~~~  296 (303)
                                          + .++.+..++..+.    +..+.+.+...+++||+++++++|.++|..++++++.....
T Consensus       147 --------------------~-~E~~~~~~r~~~~----Y~~l~~~~~~~~~~IDa~~~~e~V~~~I~~~v~~~l~~~~~  201 (209)
T d1nn5a_         147 --------------------R-YENGAFQERALRC----FHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATATE  201 (209)
T ss_dssp             --------------------T-TCSHHHHHHHHHH----HHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             --------------------c-cccHHHHHHHHHH----HHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHHhccc
Confidence                                1 1123332222222    23333444446789999999999999999999999987766


Q ss_pred             cccc
Q 022042          297 ALGS  300 (303)
Q Consensus       297 ~~~~  300 (303)
                      .+..
T Consensus       202 ~~~~  205 (209)
T d1nn5a_         202 KPLG  205 (209)
T ss_dssp             SCCC
T ss_pred             Cchh
Confidence            5543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.75  E-value=1.1e-17  Score=135.26  Aligned_cols=168  Identities=18%  Similarity=0.243  Sum_probs=98.9

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhC-CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYG-LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP  159 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg-~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~  159 (303)
                      +++++.|+|+|+|||||||+|+.|+++|+ +.+++.+++..........       ....+...........+.+.+...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~   74 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEY-------DTELDTHIIEEKDEDRLLDFMEPI   74 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC-------------CCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHhhhhhH-------HHhhcccchHHHHHHHHHHHHHhh
Confidence            46788999999999999999999999996 5777777666543211111       111122223333333333333333


Q ss_pred             CCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042          160 DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD  239 (303)
Q Consensus       160 ~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~  239 (303)
                      ...+.+++++++.+..     +..  ..++.+|||+|+++++.+|+.+|....                   .+.     
T Consensus        75 i~~~~~~~~~~~~~~~-----~~~--~~~~~vI~L~~~~e~l~~Rl~~R~~~~-------------------~~~-----  123 (174)
T d1y63a_          75 MVSRGNHVVDYHSSEL-----FPE--RWFHMVVVLHTSTEVLFERLTKRQYSE-------------------AKR-----  123 (174)
T ss_dssp             HTSSSEEEEECSCCTT-----SCG--GGCSEEEEEECCHHHHHHHHHHTTCCH-------------------HHH-----
T ss_pred             hhhcccccccHHHHHH-----HHH--hcCceEEEEECCHHHHHHHHHhCCCcc-------------------ccc-----
Confidence            3336778888866543     211  136789999999999999999885210                   000     


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          240 DTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       240 d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                        .+.  ...+.+...+....+.|...++...++.+++++.+.|.++++.+
T Consensus       124 --~~~--~~~e~~~~~~~~~~~~~~~~~~i~~~~~t~ee~~~~V~~I~~~i  170 (174)
T d1y63a_         124 --AEN--MEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAATVEEIRERV  170 (174)
T ss_dssp             --HHH--HHHHHTTHHHHHHHHHSCGGGEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             --ccc--hhhhhhhhhHHHHHHhhcCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence              000  00111122223344455554444456789999988888776654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=9.6e-18  Score=135.31  Aligned_cols=165  Identities=13%  Similarity=0.032  Sum_probs=97.0

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHH----cCCcchHHHHHHHHcCCCcChHHHHHHHHHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA----AGSENGKRAKEHMEKGQLVPDEIVVTMVKERL  156 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~----~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l  156 (303)
                      +..+.+|+|+|+|||||||+|+.|++++|+.+++.|.+......    .+...........       ...+...+...+
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~   75 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPW-------LQALNDAAFAMQ   75 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHH-------HHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHhhhhccCcceehhhhHHH-------HHHHHHHHHHHH
Confidence            45678999999999999999999999999999999876544321    1111111110000       001111122222


Q ss_pred             cCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhcc
Q 022042          157 SQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTK  236 (303)
Q Consensus       157 ~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~  236 (303)
                      ..    ...++++...........+ .....+..+|||++|++++.+|+.+|..+                         
T Consensus        76 ~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~l~~~~e~~~~Rl~~R~~~-------------------------  125 (171)
T d1knqa_          76 RT----NKVSLIVCSALKKHYRDLL-REGNPNLSFIYLKGDFDVIESRLKARKGH-------------------------  125 (171)
T ss_dssp             HH----CSEEEEECCCCSHHHHHHH-HTTCTTEEEEEEECCHHHHHHHHHTSTTC-------------------------
T ss_pred             hc----cCceEeeccchHHHHHHHH-HHhCCCceEEeecCCHHHHHHHHHhCcCC-------------------------
Confidence            11    3444444332233333333 34445778999999999999999988521                         


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHH
Q 022042          237 RFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN  289 (303)
Q Consensus       237 r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~  289 (303)
                        ....+.+..+++.+..   +.  ..+..+++||+++++++++++|.+.|++
T Consensus       126 --~~~~~~~~~~~~~~e~---~~--~~e~~~~~id~~~~~e~v~~~i~~~lk~  171 (171)
T d1knqa_         126 --FFKTQMLVTQFETLQE---PG--ADETDVLVVDIDQPLEGVVASTIEVIKK  171 (171)
T ss_dssp             --CCCHHHHHHHHHHCCC---CC--TTCTTEEEEECSSCHHHHHHHHHHHHHC
T ss_pred             --CccHHHHHhhHHHhhC---CC--cccCCEEEEeCCCCHHHHHHHHHHHhcC
Confidence              1123333332222211   00  1122467899999999999999998863

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=3.3e-17  Score=137.28  Aligned_cols=174  Identities=18%  Similarity=0.215  Sum_probs=99.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCc-----Ch---------
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV-----PD---------  145 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~-----~~---------  145 (303)
                      ++++|+|+|++||||||+++.|+++|   |+..+...   +  ...++..+..+++.+..+...     ..         
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~---~--ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~   75 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT---R--EPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYA   75 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE---E--SSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEe---c--CCCCccchhhhHHHHhccccccccccchHHHHHHHHH
Confidence            35689999999999999999999987   44332110   0  011223334444443332111     10         


Q ss_pred             ---HHHHHHHHHHHcCCCCCCCcEEEcCCC------------CCHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhc
Q 022042          146 ---EIVVTMVKERLSQPDSQENGWLLDGYP------------RSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVG  207 (303)
Q Consensus       146 ---~~~~~~l~~~l~~~~~~~~~~Vldg~p------------~~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~  207 (303)
                         ......+...+..    +..+|.|.|.            ........+..   ....||++|||++|++++.+|+.+
T Consensus        76 ~~~~~~~~~i~~~l~~----~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~~  151 (210)
T d4tmka_          76 ARVQLVETVIKPALAN----GTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARA  151 (210)
T ss_dssp             HHHHHHHHTHHHHHHT----TCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc----CCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhhh
Confidence               0111222333332    4556777542            12222222222   246799999999999999999998


Q ss_pred             CCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHH
Q 022042          208 RRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       208 R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l  287 (303)
                      |....                    +   -.....+.+++..+.|.+    +.+.+ ..+++||+++++++|.++|.+.|
T Consensus       152 R~~~~--------------------~---~~~~~~~~~~~v~~~y~~----~~~~~-~~~~~IDa~~~~e~v~~~I~~~i  203 (210)
T d4tmka_         152 RGELD--------------------R---IEQESFDFFNRTRARYLE----LAAQD-KSIHTIDATQPLEAVMDAIRTTV  203 (210)
T ss_dssp             HSSCC--------------------T---TTTSCHHHHHHHHHHHHH----HHHTC-TTEEEEETTSCHHHHHHHHHHHH
T ss_pred             ccccc--------------------h---hhhccHHHHHHHHHHHHH----HHhcC-CCEEEEECCCCHHHHHHHHHHHH
Confidence            85210                    0   001223333333333322    22222 35788999999999999999999


Q ss_pred             HHHHHh
Q 022042          288 TNLLEQ  293 (303)
Q Consensus       288 ~~~l~~  293 (303)
                      .+++++
T Consensus       204 ~~~l~~  209 (210)
T d4tmka_         204 THWVKE  209 (210)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            998864

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=4.6e-16  Score=130.84  Aligned_cols=181  Identities=17%  Similarity=0.136  Sum_probs=100.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC-cChHHHH-----------H
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-VPDEIVV-----------T  150 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~-~~~~~~~-----------~  150 (303)
                      ++++|+|+|+.||||||+++.|+++|.....-+.     ....+++.|..+++++..... +.+....           .
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~-----~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~   76 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLK-----FPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD   76 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEE-----SSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEE-----ECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHH
Confidence            5679999999999999999999999853222110     011234455556655544322 2222111           1


Q ss_pred             HHHHHHcCCCCCCCcEEEcCCCC--------------CHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042          151 MVKERLSQPDSQENGWLLDGYPR--------------SLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK  216 (303)
Q Consensus       151 ~l~~~l~~~~~~~~~~Vldg~p~--------------~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~  216 (303)
                      .+...+.    .+..+|.|.|..              ...+...+......||++|||+++++...+|..+|..+     
T Consensus        77 ~i~~~l~----~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~~-----  147 (214)
T d1tmka_          77 KIKKDLL----EGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDE-----  147 (214)
T ss_dssp             HHHHHHH----TTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------CCSS-----
T ss_pred             HHHHHHh----cCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccchh-----
Confidence            1222222    256678886521              12222222323468999999999999888886655321     


Q ss_pred             eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcC-CCCHHHHHHHHHHHHHHHHHhhh
Q 022042          217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNG-SVNKEDVFAQIDVALTNLLEQRK  295 (303)
Q Consensus       217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~-~~s~eev~~~I~~~l~~~l~~~~  295 (303)
                                          + .+..+..++-.+.|.+........+...+++||+ +.++++|.++|.+.|++++..+.
T Consensus       148 --------------------~-~e~~~~~~~v~~~Y~~l~~~~~~~~~~~~~iID~s~~~~eev~~~I~~~v~~~l~~~~  206 (214)
T d1tmka_         148 --------------------R-YETVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLSTHI  206 (214)
T ss_dssp             --------------------T-TCCHHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTCCHHHHHHHHHHHHHHHHHSCC
T ss_pred             --------------------h-hhhHHHHHHHHHHHHHHHHHhhhhCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHhhc
Confidence                                0 1123333333344444444333444556788996 47999999999999999998765


Q ss_pred             hcc
Q 022042          296 SAL  298 (303)
Q Consensus       296 ~~~  298 (303)
                      ..+
T Consensus       207 ~~~  209 (214)
T d1tmka_         207 DHD  209 (214)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.67  E-value=5.2e-17  Score=130.61  Aligned_cols=108  Identities=17%  Similarity=0.178  Sum_probs=65.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCCc
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG  165 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~  165 (303)
                      .|+|+|+|||||||+++.||++||++++++|+++++..      +..+..++..............+...+..    ...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~------g~~i~~~~~~~g~~~~r~~e~~v~~~l~~----~~~   71 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF------NQKVSEIFEQKRENFFREQEQKMADFFSS----CEK   71 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH------TSCHHHHHHHHCHHHHHHHHHHHHHHHTT----CCS
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHH------hhhhhhHHHhhhhccchhhhhhhchhhhh----ccc
Confidence            47889999999999999999999999999999986642      22333333332111111112223333333    233


Q ss_pred             EEEc-CCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          166 WLLD-GYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       166 ~Vld-g~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      .|+. |-.  ......+.    ..+.+|||++|.+++.+|+..|.
T Consensus        72 ~v~~~~g~--~~~~~~l~----~~~~vI~L~~s~~~l~~Rl~~~~  110 (161)
T d1viaa_          72 ACIATGGG--FVNVSNLE----KAGFCIYLKADFEYLKKRLDKDE  110 (161)
T ss_dssp             EEEECCTT--GGGSTTGG----GGCEEEEEECCHHHHTTCCCGGG
T ss_pred             cccccccc--hhhHHHHH----hCCeEEEeccchHHHHHHHcccc
Confidence            4443 311  10111122    24589999999999999986653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.66  E-value=1.1e-15  Score=127.64  Aligned_cols=166  Identities=17%  Similarity=0.223  Sum_probs=100.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcCh-------------------
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD-------------------  145 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~-------------------  145 (303)
                      ++|+|+|++||||||+|+.|. ++|++++++|++.++.+..+......+.+.+......++                   
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~~~~~   81 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHHHhccchhHHHHHHhcccceecCCCcccHHHHhhhhhhhhhhh
Confidence            689999999999999999996 589999999999998777666555555544433222211                   


Q ss_pred             ----HHHHHHH----HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCce
Q 022042          146 ----EIVVTMV----KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKI  217 (303)
Q Consensus       146 ----~~~~~~l----~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~  217 (303)
                          ..+...+    ...+...  ....+|++. |...+ .    .....+|.+|+++||++++++|+..|+        
T Consensus        82 ~~l~~i~hp~v~~~~~~~~~~~--~~~~vv~e~-~ll~e-~----~~~~~~d~ii~v~~~~~~r~~R~~~R~--------  145 (205)
T d1jjva_          82 LWLNNLLHPAIRERMKQKLAEQ--TAPYTLFVV-PLLIE-N----KLTALCDRILVVDVSPQTQLARSAQRD--------  145 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC--CSSEEEEEC-TTTTT-T----TCGGGCSEEEEEECCHHHHHHHHC-----------
T ss_pred             hHhhcccCHHHHHHHHHHHhhc--cCCeEEEEe-ccccc-c----chhhhhhheeeecchHHHHHHHHHhcC--------
Confidence                1111111    2222221  134466665 32111 0    011247899999999999999999884        


Q ss_pred             ecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042          218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~  292 (303)
                                           +.+.+.+..|++.+......  ..+  .-++|++++++++..+++.+.+.++.+
T Consensus       146 ---------------------~~s~e~~~~~~~~Q~~~~~k--~~~--aD~vI~N~~~l~~~~~~l~~~i~~i~~  195 (205)
T d1jjva_         146 ---------------------NNNFEQIQRIMNSQVSQQER--LKW--ADDVINNDAELAQNLPHLQQKVLELHQ  195 (205)
T ss_dssp             -----------------------CHHHHHHHHHHSCCHHHH--HHH--CSEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------CchHHHHHHHHHhCCCHHHH--HHh--CCEEEECCCChHHHHHHHHHHHHHHHH
Confidence                                 12355555555543222111  111  235789999998888877777766644

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=3.1e-16  Score=126.33  Aligned_cols=109  Identities=22%  Similarity=0.277  Sum_probs=66.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      .|+|+|+|||||||+++.|+++||+++++.|+++.+..      |..+.+++.. |.....+.....+...+..    .+
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~------g~~i~~~~~~~g~~~~r~~e~~~~~~~~~~----~~   72 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT------GRSIADIFATDGEQEFRRIEEDVVRAALAD----HD   72 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH------SSCHHHHHHHHCHHHHHHHHHHHHHHHHHH----CC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhh------hhhhhhhhhhhhHHHHHHHHhhhhhhcccc----cc
Confidence            46677999999999999999999999999999887642      2222333222 2111122222223332322    34


Q ss_pred             cEEEcCCCC--CHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          165 GWLLDGYPR--SLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       165 ~~Vldg~p~--~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      .++..|...  .......+     ....+|||+++++++.+|+.++.
T Consensus        73 ~vi~~gg~~~~~~~~~~~l-----~~~~~I~L~~~~~~~~~R~~~~~  114 (165)
T d2iyva1          73 GVLSLGGGAVTSPGVRAAL-----AGHTVVYLEISAAEGVRRTGGNT  114 (165)
T ss_dssp             SEEECCTTGGGSHHHHHHH-----TTSCEEEEECCHHHHHHHTTCCC
T ss_pred             ccccccccccccccccccc-----cccceeeeeccchhhhhcccccc
Confidence            566655322  22211112     23468999999999999997654

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.65  E-value=1.1e-15  Score=124.82  Aligned_cols=177  Identities=16%  Similarity=0.104  Sum_probs=98.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC-----ceeehHHHHHHHHHcCCcchH--HHHHHHHcCCCcChHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGL-----VHIAAGDLLRAEIAAGSENGK--RAKEHMEKGQLVPDEIVVTMVKERL  156 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~-----~~i~~d~l~~~~~~~~~~~~~--~i~~~~~~g~~~~~~~~~~~l~~~l  156 (303)
                      |++|+|+|+|||||||+++.|+++|+.     .+++.++..+...........  ....................+....
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEA   80 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhhhhccccchhhcccCHHHHHHHHHHHH
Confidence            578999999999999999999999843     456667766654443211110  0000000000000000111122222


Q ss_pred             cCCCCCCCcEEEcCCCCCHHH--------HHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCch
Q 022042          157 SQPDSQENGWLLDGYPRSLSQ--------ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETD  228 (303)
Q Consensus       157 ~~~~~~~~~~Vldg~p~~~~~--------~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~  228 (303)
                      ...  ...++++|+++.....        .....  ...|+++|||+++++++.+|+.+|...                 
T Consensus        81 ~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~~~~~~~~R~~~r~~~-----------------  139 (194)
T d1nksa_          81 RAG--GEGYLFIDTHAVIRTPSGYLPGLPSYVIT--EINPSVIFLLEADPKIILSRQKRDTTR-----------------  139 (194)
T ss_dssp             HHT--CSSEEEEEECSEEEETTEEEESSCHHHHH--HHCCSEEEEEECCHHHHHHHHHHCTTT-----------------
T ss_pred             HHh--CCCcEEEEccCchHHHHHHHHhHHHHHHh--hhccccceEEecCHHHHHHHHHHhhhc-----------------
Confidence            221  1355666654321000        00011  125899999999999999999987521                 


Q ss_pred             HHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHh-hcceE-EEcCCCCHHHHHHHHHHHHH
Q 022042          229 EIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY-EDVTV-EVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       229 ~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~-~~~~~-~Id~~~s~eev~~~I~~~l~  288 (303)
                             .+.....+.+.+++..+..........+ +..+. ++++++++++++++|.+.|+
T Consensus       140 -------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~ik  194 (194)
T d1nksa_         140 -------NRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSMK  194 (194)
T ss_dssp             -------CCCCCCSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             -------ccccchHHHHHHHHHHHHHhHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence                   2334445666666666655444444333 44444 44577999999999998773

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.65  E-value=3.2e-15  Score=121.37  Aligned_cols=176  Identities=14%  Similarity=0.194  Sum_probs=96.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP  159 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~  159 (303)
                      ++|+|+|+|||||||+++.|+++|+     ...++.++..+............  ..+..................+...
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   79 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDR--DQMRKMDPETQKRIQKMAGRKIAEM   79 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSG--GGGSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhhh--hhhhhhhchhhHHHHHHHHHHHHHH
Confidence            5899999999999999999999884     34566777777654432111000  0000000000011111111111111


Q ss_pred             CCCCCcEEEcCCCCCHHHH------HHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhh
Q 022042          160 DSQENGWLLDGYPRSLSQA------TALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAAR  233 (303)
Q Consensus       160 ~~~~~~~Vldg~p~~~~~~------~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~r  233 (303)
                      . .+..+++|+++....+.      ..+......|+.+|||+++++++.+|+.+|...                      
T Consensus        80 ~-~~~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~~~~~----------------------  136 (190)
T d1khta_          80 A-KESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETR----------------------  136 (190)
T ss_dssp             H-TTSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSC----------------------
T ss_pred             h-CCCeEEECCcccchHHHHHHHhhhhhhhhhccccceeeecCCHHHHHHHHHHhccc----------------------
Confidence            1 14678888865321000      001111125899999999999999999887521                      


Q ss_pred             hccCCCCcHHHHHHHHHHHHHHHHHHHHHhhc-ce-EEEcCCCCHHHHHHHHHHHHH
Q 022042          234 LTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED-VT-VEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       234 L~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~-~~-~~Id~~~s~eev~~~I~~~l~  288 (303)
                        .+..+..+.++ +...++..+...+..+.. .+ ++++++.++++++++|.+.|+
T Consensus       137 --~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ee~~~ei~~~lk  190 (190)
T d1khta_         137 --VRDLDTASTIE-QHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVLR  190 (190)
T ss_dssp             --SSSCCCHHHHH-HHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred             --cCCcccHHHHH-HHHHHHHHHHHHHHHhhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence              12233344443 333333333333333433 33 345678999999999998873

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=5.5e-16  Score=127.66  Aligned_cols=167  Identities=20%  Similarity=0.168  Sum_probs=94.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcch---------------HHHHHHHHcCCCc---
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENG---------------KRAKEHMEKGQLV---  143 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~---------------~~i~~~~~~g~~~---  143 (303)
                      +.|++|+|+|++||||||+|+.|. ++|+.++++|.+.+.....+....               ..+.+.+......   
T Consensus         1 k~p~IIgitG~~gSGKstva~~l~-~~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~   79 (191)
T d1uf9a_           1 KHPIIIGITGNIGSGKSTVAALLR-SWGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKA   79 (191)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHH-HTTCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH-HCCCeEEEccHHHHHhhhcccccccccccceeccCchhhhhHHHhhhcCchhhhh
Confidence            358999999999999999999994 589999999998887654431111               1111111000000   


Q ss_pred             ChHHH----HHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceec
Q 022042          144 PDEIV----VTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYH  219 (303)
Q Consensus       144 ~~~~~----~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~  219 (303)
                      -....    ...+........  ...+|+++.....      ......+|.+||++||.+++++|+.+|+.     .   
T Consensus        80 l~~~~~~~~~~~~~~~~~~~~--~~~vi~e~~~~~~------~~~~~~~d~vI~v~a~~e~r~~Rl~~R~~-----~---  143 (191)
T d1uf9a_          80 LEAVVHPEVRRLLMEELSRLE--APLVFLEIPLLFE------KGWEGRLHGTLLVAAPLEERVRRVMARSG-----L---  143 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCC--CSEEEEECTTTTT------TTCGGGSSEEEEECCCHHHHHHHHHTTTC-----C---
T ss_pred             hhhhhhHHHHHHHHhhhhhcc--cceEEEEeecccc------ccccccceeEEEEecchhhHHHHHHhccc-----c---
Confidence            00001    111122222222  3567777643110      00112468999999999999999999841     0   


Q ss_pred             ccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042          220 VKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL  290 (303)
Q Consensus       220 ~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~  290 (303)
                                           +.+.+..+++.+..... .. .+  .-++|+++.+++++..+|.++++++
T Consensus       144 ---------------------~~~~~~~~~~~q~~~~~-~~-~~--aD~vI~N~~s~~~l~~~v~~il~~l  189 (191)
T d1uf9a_         144 ---------------------SREEVLARERAQMPEEE-KR-KR--ATWVLENTGSLEDLERALKAVLAEL  189 (191)
T ss_dssp             ---------------------TTHHHHHHHTTSCCHHH-HH-HH--CSEEECCSSHHHHHHHHHHHHHHSC
T ss_pred             ---------------------hHHHHHHHHHhCCCHHH-HH-Hh--CCEEEECCCCHHHHHHHHHHHHHHc
Confidence                                 11222222221111000 01 11  2256899999999999998887653

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.64  E-value=1.1e-15  Score=122.95  Aligned_cols=108  Identities=23%  Similarity=0.309  Sum_probs=69.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE  163 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~  163 (303)
                      .|+|+|+|+|||||||+|+.|+++||+++++.+++++....... ..     ..........+.+...+.....     .
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~-----~   72 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDG-YD-----EEYDCPILDEDRVVDELDNQMR-----E   72 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBCC-CC-----SSSSCCCBCHHHHHHHHHHHHH-----H
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhccccc-hh-----HHhhhhhHHHHHHHHHhhhhhh-----c
Confidence            46888999999999999999999999999999999876321111 00     0011222223333333333222     2


Q ss_pred             CcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          164 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       164 ~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      .+..++++....     +..  ...+.+|||+|+++++.+|+.+|.
T Consensus        73 ~~~~~~~~~~~~-----~~~--~~~~~~i~l~~~~~~~~~Rl~~r~  111 (173)
T d1rkba_          73 GGVIVDYHGCDF-----FPE--RWFHIVFVLRTDTNVLYERLETRG  111 (173)
T ss_dssp             CCEEEECSCCTT-----SCG--GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             CCcccchhHHHH-----HHH--hcCCCcceecCCHHHHHHHHHhcC
Confidence            345555543321     111  135689999999999999999885

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=1.7e-15  Score=126.68  Aligned_cols=173  Identities=13%  Similarity=0.178  Sum_probs=106.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCC-----CcChH-------------
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-----LVPDE-------------  146 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~-----~~~~~-------------  146 (303)
                      .+|+|+|++||||||+|+.|. ++|++++++|.+.++.+..+......+.+.+....     .+...             
T Consensus         4 ~iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~~~~~   82 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEK   82 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHhccchHHHHHHHHhhcccccCCcccchhhhhhhhhhhHHHH
Confidence            389999999999999999996 68999999999999887766555544444433211     11111             


Q ss_pred             -----HHHHHHHHHHcC--CCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceec
Q 022042          147 -----IVVTMVKERLSQ--PDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYH  219 (303)
Q Consensus       147 -----~~~~~l~~~l~~--~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~  219 (303)
                           ++...+...+..  .......++++. |...+     ......+|.+|+++|+++++++|+.+|+.         
T Consensus        83 ~~Le~i~hp~v~~~~~~~~~~~~~~~~~~e~-~ll~e-----~~~~~~~~~iI~V~a~~e~r~~R~~~R~~---------  147 (208)
T d1vhta_          83 NWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVE-----NSLYKKANRVLVVDVSPETQLKRTMQRDD---------  147 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTT-----TTGGGGCSEEEEEECCHHHHHHHHHHHHT---------
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhhcCCcceee-eeccc-----ccccccCCEEEEEeCCHHHHHHHHHHhhh---------
Confidence                 111222222111  011134455554 21110     00112478899999999999999998841         


Q ss_pred             ccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHhhhhc
Q 022042          220 VKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSA  297 (303)
Q Consensus       220 ~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~~~~~  297 (303)
                                          ...+.+..|+..+...... . .+  .-++|+++++++++.++|.++++++++-..+.
T Consensus       148 --------------------~~~~~~~~~~~~Q~~~~~k-~-~~--aD~vI~N~~~le~l~~~v~~l~~~~l~~~~~~  201 (208)
T d1vhta_         148 --------------------VTREHVEQILAAQATREAR-L-AV--ADDVIDNNGAPDAIASDVARLHAHYLQLASQF  201 (208)
T ss_dssp             --------------------CCHHHHHHHHHHSCCHHHH-H-HH--CSEEEECSSCTTSHHHHHHHHHHHHHHHHHHT
T ss_pred             --------------------hhHHHHHHHHHhCCCHHHH-H-Hh--CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                                2244455555543222111 1 11  23678999999999999999999888765443

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.62  E-value=3.7e-15  Score=119.54  Aligned_cols=118  Identities=18%  Similarity=0.193  Sum_probs=72.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN  164 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~  164 (303)
                      ++|+|+|+|||||||+|+.|+++++..++...+.++.....+............    .....+.......+..    +.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~~   74 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLA----LTWKNITDLTVNFLLA----QN   74 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHH----HHHHHHHHHHHHHHHT----TC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHHHHH----HHHHHHHHHHHHHHhc----CC
Confidence            479999999999999999999999887665555555433322211111111100    0112223333333332    67


Q ss_pred             cEEEcCCCCCHHHHHHH----HHhCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042          165 GWLLDGYPRSLSQATAL----KKYGFQPDLFILLEVPEDTLVERVVGRRL  210 (303)
Q Consensus       165 ~~Vldg~p~~~~~~~~l----~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~  210 (303)
                      ++|+|++.........+    ......+..++||+++.+++.+|+.+|..
T Consensus        75 ~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~  124 (176)
T d2bdta1          75 DVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK  124 (176)
T ss_dssp             EEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC
T ss_pred             CcccccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCC
Confidence            78899865544333222    22334456789999999999999999863

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.56  E-value=9.4e-15  Score=122.71  Aligned_cols=43  Identities=28%  Similarity=0.578  Sum_probs=38.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA  124 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~  124 (303)
                      ++.++|+|.|||||||||+|+.|+++||++|+|+++++|....
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~a~   43 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATY   43 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHHH
Confidence            3567899999999999999999999999999999999997543

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.54  E-value=1.9e-14  Score=119.53  Aligned_cols=77  Identities=17%  Similarity=0.151  Sum_probs=47.0

Q ss_pred             CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHH-h
Q 022042          185 GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSL-Y  263 (303)
Q Consensus       185 ~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~-~  263 (303)
                      ...||++|||+++++++.+|+.+|........                  ..+.....+..++..+.|.+    +.+. +
T Consensus       130 ~~~Pd~~i~L~~~~e~~~~Ri~~R~~~~~~~~------------------~d~~e~~~~y~~~~~~~Y~~----~~~~~~  187 (208)
T d1gsia_         130 LPKPDWQVLLAVSAELAGERSRGRAQRDPGRA------------------RDNYERDAELQQRTGAVYAE----LAAQGW  187 (208)
T ss_dssp             CCCCSEEEEECCCHHHHHHHHHHHHHHCTTCC------------------CCTTTTCHHHHHHHHHHHHH----HHHHTT
T ss_pred             ccCCceeEEecccHHHHHHHHHhhhccccccc------------------ccchhhHHHHHHHHHHHHHH----HHHhcC
Confidence            35799999999999999999998852111000                  00111123332222222322    2333 3


Q ss_pred             hcceEEEcCCCCHHHHHHHH
Q 022042          264 EDVTVEVNGSVNKEDVFAQI  283 (303)
Q Consensus       264 ~~~~~~Id~~~s~eev~~~I  283 (303)
                      ...+++||++.++++|.++|
T Consensus       188 ~~~~~vIDa~~~~e~V~~~i  207 (208)
T d1gsia_         188 GGRWLVVGADVDPGRLAATL  207 (208)
T ss_dssp             TSEEEEECTTCCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHhh
Confidence            34678999999999999876

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=2e-14  Score=120.32  Aligned_cols=41  Identities=27%  Similarity=0.443  Sum_probs=37.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA  124 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~  124 (303)
                      +++|+|.|||||||||+|+.|+++||++|||+++++|....
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~a~   43 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLAL   43 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHHH
Confidence            35999999999999999999999999999999999997654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.53  E-value=4.2e-14  Score=111.38  Aligned_cols=117  Identities=21%  Similarity=0.182  Sum_probs=75.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHHHHHHHcCCcch----HHHHHHHHcCCCcChHHHHHHHHHHHcCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAGSENG----KRAKEHMEKGQLVPDEIVVTMVKERLSQP  159 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~~~~~~~~~~~~----~~i~~~~~~g~~~~~~~~~~~l~~~l~~~  159 (303)
                      ++|+|+|+|||||||+|+.|++++ |+.+++.|++.+..........    ......       ........+...+...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~   75 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILYGG   75 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHTSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhhHH-------HHHHHHHHHHHHHHhh
Confidence            468899999999999999987665 7899999988765433211111    100000       0122334444455444


Q ss_pred             CCCCCcEEEcCCCCCHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          160 DSQENGWLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       160 ~~~~~~~Vldg~p~~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      .. ...+|+|+..........+..   ....+.++|||++|.+++.+|..+|.
T Consensus        76 ~~-~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~  127 (152)
T d1ly1a_          76 DS-VKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG  127 (152)
T ss_dssp             SS-CCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCG
T ss_pred             cc-CCCcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHccC
Confidence            33 557888886565555443333   22346689999999999999999885

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.47  E-value=2.4e-14  Score=115.14  Aligned_cols=125  Identities=12%  Similarity=0.074  Sum_probs=64.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh--HHHHHHHHHcCCcchHHHHHHHHcCCCc--ChH--HHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA--GDLLRAEIAAGSENGKRAKEHMEKGQLV--PDE--IVVTMVKERL  156 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~--d~l~~~~~~~~~~~~~~i~~~~~~g~~~--~~~--~~~~~l~~~l  156 (303)
                      ..++|+|+|+|||||||+|+.|++++|..++++  |.+.......  .........+..+...  .+.  .+...+...+
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLK--MQSAEGGIEFDADGGVSIGPEFRALEGAWAEGV   79 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGG--GGTSTTSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhcccccc--ccchhHHhhhhcccchhHHHHHHHHHHHHHHHH
Confidence            456899999999999999999999998766544  4333221100  0000000000001000  000  1111111111


Q ss_pred             cCCCCCCCcEEEcC-CCCCHHHHHH-HHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          157 SQPDSQENGWLLDG-YPRSLSQATA-LKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       157 ~~~~~~~~~~Vldg-~p~~~~~~~~-l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                      ......+..++++. +......... +.........+|||+||++++.+|+..|.
T Consensus        80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R~  134 (178)
T d1qhxa_          80 VAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG  134 (178)
T ss_dssp             HHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred             HHHHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhcC
Confidence            11111234556654 3233322222 23334456678999999999999999885

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.47  E-value=5.4e-14  Score=113.10  Aligned_cols=118  Identities=21%  Similarity=0.229  Sum_probs=67.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH-HHHHHHHHcCC--cchHHHHHHHHcCCCcChHHHHHHHHHHHcC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAG-DLLRAEIAAGS--ENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ  158 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d-~l~~~~~~~~~--~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~  158 (303)
                      +.+.+|+|+|+|||||||+|+.|++++|.++++++ +.++..+....  +......+....    ........+...+. 
T Consensus         2 ~~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-   76 (176)
T d1zp6a1           2 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRM----IMQIAADVAGRYAK-   76 (176)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHH----HHHHHHHHHHHHHH-
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHH----HHHHHHHHHHHHHh-
Confidence            45679999999999999999999999998776542 33333222110  000000000000    00111122222222 


Q ss_pred             CCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          159 PDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       159 ~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                         .+..+|+|+...... ...+... ..+..+|||+++++++.+|+.+|.
T Consensus        77 ---~~~~vi~~~~~~~~~-~~~~~~~-~~~~~~i~l~~~~e~~~~R~~~R~  122 (176)
T d1zp6a1          77 ---EGYFVILDGVVRPDW-LPAFTAL-ARPLHYIVLRTTAAEAIERCLDRG  122 (176)
T ss_dssp             ---TSCEEEECSCCCTTT-THHHHTT-CSCEEEEEEECCHHHHHHHHHTTC
T ss_pred             ---cCCCeEecccccHHH-HHHHHhc-ccccccccCCCCHHHHHHHHHhCC
Confidence               256788888543322 2223322 245678999999999999999985

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.7e-14  Score=116.19  Aligned_cols=37  Identities=35%  Similarity=0.565  Sum_probs=30.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC----------ceeehHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGL----------VHIAAGDLL  119 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~----------~~i~~d~l~  119 (303)
                      .|.+|+|+|++||||||+|+.|++.||.          .++++|+++
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy   47 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY   47 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccc
Confidence            4789999999999999999999999864          356777653

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.8e-13  Score=115.84  Aligned_cols=83  Identities=16%  Similarity=0.133  Sum_probs=52.4

Q ss_pred             CCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHH-----
Q 022042          186 FQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL-----  260 (303)
Q Consensus       186 ~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~-----  260 (303)
                      ..||++|||+++++++.+|+.+|+...+.                        ....+.+++ +...++.+..-.     
T Consensus       151 ~~Pdl~i~Ld~~pe~~~~Ri~~r~~~~e~------------------------~~~~~yl~~-l~~~y~~~~~~~~~~~~  205 (241)
T d1p5zb_         151 LELDGIIYLQATPETCLHRIYLRGRNEEQ------------------------GIPLEYLEK-LHYKHESWLLHRTLKTN  205 (241)
T ss_dssp             HCCSEEEEEECCHHHHHHHHHHHCCGGGT------------------------TCCHHHHHH-HHHHHHHHHTTCCCCCS
T ss_pred             CCCceeeeeccCHHHHHHHHHhhcchhhh------------------------cCCHHHHHH-HHHHHHHHHHHhhhhhh
Confidence            46999999999999999999887521110                        111222222 222111111000     


Q ss_pred             --HHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042          261 --SLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQ  293 (303)
Q Consensus       261 --~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~  293 (303)
                        ......+++||++.+++++.++|.+.|++++.+
T Consensus       206 ~~~~~~~~~~~ID~~~~ie~v~~~i~~~i~~~l~~  240 (241)
T d1p5zb_         206 FDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLST  240 (241)
T ss_dssp             CGGGGGSCEEEEECCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HhhcCCCCEEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence              001125789999999999999999999988753

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=9.2e-14  Score=112.52  Aligned_cols=100  Identities=17%  Similarity=0.141  Sum_probs=74.8

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD  160 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~  160 (303)
                      .+.|.+|+++|+|||||||+|+.|++.+++.+|+.|++...                        ..+...+...+..  
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~~------------------------~~~~~~~~~~l~~--   64 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSW------------------------QRCVSSCQAALRQ--   64 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCSH------------------------HHHHHHHHHHHHT--
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHHH------------------------HHHHHHHHHHHHC--
Confidence            35678999999999999999999999999999999876422                        1123344445544  


Q ss_pred             CCCCcEEEcCCCCCHHHHHHHH----HhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042          161 SQENGWLLDGYPRSLSQATALK----KYGFQPDLFILLEVPEDTLVERVVGRR  209 (303)
Q Consensus       161 ~~~~~~Vldg~p~~~~~~~~l~----~~~~~pd~vI~L~~~~e~~~~Rl~~R~  209 (303)
                        +..+|+|.......+...|.    +.+ .+..+|||++|.+++.+|...|.
T Consensus        65 --g~~vIiD~t~~~~~~R~~~~~~a~~~~-~~~~~v~l~~~~e~~~~Rn~~R~  114 (172)
T d1yj5a2          65 --GKRVVIDNTNPDVPSRARYIQCAKDAG-VPCRCFNFCATIEQARHNNRFRE  114 (172)
T ss_dssp             --TCCEEEESCCCSHHHHHHHHHHHHHHT-CCEEEEEECCCHHHHHHHHHHHH
T ss_pred             --CCCceeeCcCCCHHHHHHHHHHHHhcC-CCEEEEEeCCCHHHHHHHHHHhc
Confidence              67799998666665554443    234 34568999999999999999885

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=2.6e-13  Score=107.28  Aligned_cols=163  Identities=14%  Similarity=0.115  Sum_probs=81.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCCc
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG  165 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~  165 (303)
                      .|+|+|+|||||||+|+.||++||+++++.+..........  ... ........   ...............   ....
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~~~--~~~-~~~~~~~~---~~~~~~~~~~~~~~~---~~~~   74 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGAD--VGW-VFDLEGEE---GFRDREEKVINELTE---KQGI   74 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSC--HHH-HHHHHHHH---HHHHHHHHHHHHHHT---SSSE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhccc--ccc-hhhhhhhh---HHHHHHHHHHHhhcc---ccce
Confidence            58899999999999999999999999999988776542221  111 00000000   000111111111111   1233


Q ss_pred             EEEcCCC--CCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHH
Q 022042          166 WLLDGYP--RSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEE  243 (303)
Q Consensus       166 ~Vldg~p--~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e  243 (303)
                      ++.....  ........+..    ....+++.+++.++..|+..+......                     .......+
T Consensus        75 ~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~~~~~---------------------~~~~~~~~  129 (169)
T d1kaga_          75 VLATGGGSVKSRETRNRLSA----RGVVVYLETTIEKQLARTQRDKKRPLL---------------------HVETPPRE  129 (169)
T ss_dssp             EEECCTTGGGSHHHHHHHHH----HSEEEECCCCHHHHHSCC------CCS---------------------SSSCCCHH
T ss_pred             EeeccchhhhhhhhhHHhhh----cceeeeccCcHHHhhhHhhhccccchh---------------------cccccchh
Confidence            4443322  22333333332    357999999999999888765421110                     01122233


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcceEEEcC-CCCHHHHHHHHHHHHH
Q 022042          244 KVKLRLKTHHHNVEAVLSLYEDVTVEVNG-SVNKEDVFAQIDVALT  288 (303)
Q Consensus       244 ~~~~r~~~~~~~~~~~~~~~~~~~~~Id~-~~s~eev~~~I~~~l~  288 (303)
                      .+...+.....    ++..+.  -++||+ +.++++++++|.+.|+
T Consensus       130 ~~~~~~~~~~~----~y~~~~--d~~Idt~~~s~ee~v~~Ii~~le  169 (169)
T d1kaga_         130 VLEALANERNP----LYEEIA--DVTIRTDDQSAKVVANQIIHMLE  169 (169)
T ss_dssp             HHHHHHHHHHH----HHHHHC--SEEC-----CHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhh----hhhccC--CEEEECCCCCHHHHHHHHHHHhC
Confidence            33333333322    222222  255776 4699999999988763

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.32  E-value=1.2e-12  Score=107.66  Aligned_cols=35  Identities=20%  Similarity=0.336  Sum_probs=30.3

Q ss_pred             cccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           79 SATVEPLKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        79 ~~~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      ....+|++|+|+|+.||||||+++.|+++++...+
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~   38 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICL   38 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            34578999999999999999999999999975544

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.3e-12  Score=108.19  Aligned_cols=31  Identities=32%  Similarity=0.511  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      .|++|+|.|+.||||||+++.|+++|+...+
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~l~~~~i   31 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence            4789999999999999999999999975544

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.23  E-value=5.6e-11  Score=98.68  Aligned_cols=119  Identities=12%  Similarity=0.088  Sum_probs=65.1

Q ss_pred             hcccCCCeEEEEEcCCCCCHHHHHHHHHHHh----CC--ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHH
Q 022042           78 ASATVEPLKIMISGAPASGKGTQCELIKEKY----GL--VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTM  151 (303)
Q Consensus        78 ~~~~~~~~~I~I~G~pGSGKSTla~~La~~l----g~--~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~  151 (303)
                      ...+.++++|+|+|.|||||||+|+.|++++    +.  .+++.|. ++..+..+..+....+....       .....+
T Consensus        18 ~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~-iR~~l~~~l~ys~~~r~~~~-------~r~~~~   89 (208)
T d1m7ga_          18 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN-IRFGLNKDLGFSEADRNENI-------RRIAEV   89 (208)
T ss_dssp             HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH-HTTTTTTTCCSSHHHHHHHH-------HHHHHH
T ss_pred             HHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchH-HHHhhcCCCCCChhHHHHHH-------HHHHHH
Confidence            3456788999999999999999999999765    33  3444443 44432221111111111000       001111


Q ss_pred             HHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHH---------hCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042          152 VKERLSQPDSQENGWLLDGYPRSLSQATALKK---------YGFQPDLFILLEVPEDTLVERVVGR  208 (303)
Q Consensus       152 l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~---------~~~~pd~vI~L~~~~e~~~~Rl~~R  208 (303)
                      ......    ++..+|++.........+.+.+         ....+.+.|||+||.+++.+|..++
T Consensus        90 a~~~~~----~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~  151 (208)
T d1m7ga_          90 AKLFAD----SNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKG  151 (208)
T ss_dssp             HHHHHH----TTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTC
T ss_pred             HHHHhc----cCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhccc
Confidence            111111    2455666653333333322222         1334567899999999999997655

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.22  E-value=9.8e-11  Score=94.90  Aligned_cols=162  Identities=21%  Similarity=0.233  Sum_probs=84.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcc--------hHHHHHHHHcCCCcChH---------
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSEN--------GKRAKEHMEKGQLVPDE---------  146 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~--------~~~i~~~~~~g~~~~~~---------  146 (303)
                      +++|+|+||+||||||+++.|.+++.-.+++....-|. ...+...        ...+.+....+..+...         
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~-~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~   80 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRA-PRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRS   80 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSC-CCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccC-CCccccCCcceeeccchhhhhhhcccccchhhhcccCcccc
Confidence            35899999999999999999999874332222111110 0000000        12222223333221100         


Q ss_pred             -HHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCC
Q 022042          147 -IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPP  225 (303)
Q Consensus       147 -~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p  225 (303)
                       .....+...+..    +..++++.-+   .-+..+......+..++++..+.+++.+|+.+|.                
T Consensus        81 g~~~~~~~~~~~~----g~~~i~~~~~---~g~~~l~~~~~~~~~i~i~~~s~e~L~~RL~~Rg----------------  137 (182)
T d1znwa1          81 GTLAQPVRAAAAT----GVPVLIEVDL---AGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRG----------------  137 (182)
T ss_dssp             EEEHHHHHHHHHH----TCCEEEECCH---HHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTS----------------
T ss_pred             ccccchhhhhhhc----CCcccccccc---chhhhhhhcCcceeEEeeecccHHHHHHHhhhcC----------------
Confidence             001111111111    4456666432   2233344444455455555667888888888874                


Q ss_pred             CchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHH
Q 022042          226 ETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVAL  287 (303)
Q Consensus       226 ~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l  287 (303)
                                   .++++.+++|++.+..+..    ++...-.+|.+ .++++.++++.++|
T Consensus       138 -------------~~~~e~I~~Rl~~~~~e~~----~~~~fD~vI~N-ddle~a~~~l~~iI  181 (182)
T d1znwa1         138 -------------TETADVIQRRLDTARIELA----AQGDFDKVVVN-RRLESACAELVSLL  181 (182)
T ss_dssp             -------------CSCHHHHHHHHHHHHHHHH----GGGGSSEEEEC-SSHHHHHHHHHHHH
T ss_pred             -------------cchHHHHHHHHHHHHHHHh----hHhcCCEEEEC-cCHHHHHHHHHHHh
Confidence                         3457888888887654332    22222233444 48999999888775

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.8e-12  Score=103.84  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=29.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD  117 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~  117 (303)
                      ++++|+|+|+|||||||+|+.|+++++..+++.+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~   52 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYT   52 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccc
Confidence            57899999999999999999999999765555443

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=2.7e-11  Score=99.17  Aligned_cols=55  Identities=16%  Similarity=0.258  Sum_probs=34.4

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHhhc-ceEEEcCCCCHHHHHHHHHHHHHHHHHhhh
Q 022042          238 FDDTEEKVKLRLKTHHHNVEAVLSLYED-VTVEVNGSVNKEDVFAQIDVALTNLLEQRK  295 (303)
Q Consensus       238 ~~d~~e~~~~r~~~~~~~~~~~~~~~~~-~~~~Id~~~s~eev~~~I~~~l~~~l~~~~  295 (303)
                      ..++++.+.+|+..+.......  .+.. .-++|.+ .++++.+++|.++|.+.+++.+
T Consensus       134 ~~~~~e~i~~rl~~~~~~~~~~--~~~~~fd~iI~N-~dle~a~~~l~~iI~~~~~k~~  189 (190)
T d1lvga_         134 NTETEESLAKRLAAARTDMESS--KEPGLFDLVIIN-DDLDKAYATLKQALSEEIKKAQ  189 (190)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTGG--GSTTTCSEEEEC-SSHHHHHHHHHHHTHHHHHHTT
T ss_pred             cccchHHHHHHHHHHHHHHHhh--hhcCCCCEEEEC-cCHHHHHHHHHHHHHHHHhccC
Confidence            3566888888888765532211  1111 1133444 3799999999999988877653

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.10  E-value=2.6e-10  Score=91.44  Aligned_cols=34  Identities=15%  Similarity=0.123  Sum_probs=31.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAG  116 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d  116 (303)
                      .+++|+|+|+|||||||+|+.|+++||.+++..+
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~   39 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEY   39 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhCCCeEeee
Confidence            4679999999999999999999999999988654

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=1.5e-10  Score=94.19  Aligned_cols=161  Identities=17%  Similarity=0.220  Sum_probs=84.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCce-eehHHHHHHHHHcCC--------cchHHHHHHHHcCCCcChHH--------HH
Q 022042           87 IMISGAPASGKGTQCELIKEKYGLVH-IAAGDLLRAEIAAGS--------ENGKRAKEHMEKGQLVPDEI--------VV  149 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~lg~~~-i~~d~l~~~~~~~~~--------~~~~~i~~~~~~g~~~~~~~--------~~  149 (303)
                      |+|+||+|||||||++.|++++...+ +.....-|. ...+.        .....+.+....|..+....        ..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~-~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~   82 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT-PRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV   82 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSC-CCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCC-CCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecch
Confidence            78999999999999999999874211 100000000 00000        01122333333333221100        01


Q ss_pred             HHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHh-CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCch
Q 022042          150 TMVKERLSQPDSQENGWLLDGYPRSLSQATALKKY-GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETD  228 (303)
Q Consensus       150 ~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~-~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~  228 (303)
                      ..+...+..    +..+|+|..+....+   +... ...+..++++..+.+++.+|+.+|+                   
T Consensus        83 ~~i~~~~~~----g~~~i~~~~~~~~~~---lk~~~~~~~~~i~~~~~~~e~l~~RL~~Rg-------------------  136 (186)
T d1gkya_          83 ASVKQVSKS----GKTCILDIDMQGVKS---VKAIPELNARFLFIAPPSVEDLKKRLEGRG-------------------  136 (186)
T ss_dssp             HHHHHHHHH----TSEEEEECCHHHHHH---HHTCGGGCCEEEEEECSCHHHHHHHHHHHS-------------------
T ss_pred             hhHHHHhcC----CCeEEecchHHHHHH---HHHhhcccceEEEecCCcHHHHHHHHHhhc-------------------
Confidence            111222221    456677765433333   3321 2345567777888888889988774                   


Q ss_pred             HHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhc-ceEEEcCCCCHHHHHHHHHHHHH
Q 022042          229 EIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED-VTVEVNGSVNKEDVFAQIDVALT  288 (303)
Q Consensus       229 ~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~-~~~~Id~~~s~eev~~~I~~~l~  288 (303)
                                .++++.+.+|+..+......   .+.. .-++|.+ .++++.+++|.++|.
T Consensus       137 ----------~~~~~~I~~Rl~~~~~e~~~---~~~~~fd~vI~N-~dle~a~~~l~~iI~  183 (186)
T d1gkya_         137 ----------TETEESINKRLSAAQAELAY---AETGAHDKVIVN-DDLDKAYKELKDFIF  183 (186)
T ss_dssp             ----------CSCHHHHHHHHHHHHHHHHH---HTTTCSSEEEEC-SSHHHHHHHHHHHHH
T ss_pred             ----------cchhHHHHHHHHHHHHHHHh---hhhcCCCEEEEC-cCHHHHHHHHHHHHH
Confidence                      34577888888776544321   1222 1133444 478888888887764

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.08  E-value=1.4e-10  Score=94.24  Aligned_cols=33  Identities=30%  Similarity=0.322  Sum_probs=28.1

Q ss_pred             hhcccCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           77 LASATVEPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        77 ~~~~~~~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      +.....++++|+|+|++||||||+|+.|++.++
T Consensus        15 ~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          15 LAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             HTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             HhccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            334556788999999999999999999999875

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=1.1e-09  Score=90.37  Aligned_cols=26  Identities=12%  Similarity=0.170  Sum_probs=23.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      +++|+|+||+|||||||.+.|.+.+.
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            56899999999999999999999874

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.97  E-value=9.5e-10  Score=87.62  Aligned_cols=31  Identities=16%  Similarity=0.277  Sum_probs=27.7

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      .+.++++|+|+|+|||||||+|+.|+++|+.
T Consensus         2 ~~~~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           2 RATQGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             TTTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3567899999999999999999999999853

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.76  E-value=2.5e-09  Score=87.67  Aligned_cols=122  Identities=11%  Similarity=0.125  Sum_probs=61.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC-----ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGL-----VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ  158 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~-----~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~  158 (303)
                      |.+|+++|.|||||||+|+.|+++++.     ..++.|. ++...............................+.+.+..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ-YRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF   80 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccc-eehhhccccccccccccccccchhhHHHHHHHHHHHHHHH
Confidence            678999999999999999999998853     4566665 4444433221110000000000000011111222221111


Q ss_pred             CC-CCCCcEEEcCCCCCHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHh
Q 022042          159 PD-SQENGWLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERVV  206 (303)
Q Consensus       159 ~~-~~~~~~Vldg~p~~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~  206 (303)
                      .. ..+..+|+|+......+...+.+   ....+.+++++.|+.+.+.++..
T Consensus        81 ~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (213)
T d1bifa1          81 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANI  132 (213)
T ss_dssp             HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHH
T ss_pred             HHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHHHhH
Confidence            11 11345778885555444444332   22345567778888777665543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=98.73  E-value=5.3e-08  Score=85.74  Aligned_cols=28  Identities=21%  Similarity=0.330  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ...++|+|.|+.|+||||+++.|+++++
T Consensus         4 ~~~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           4 VTIVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             CceEEEEEECCccCCHHHHHHHHHHHhc
Confidence            3457999999999999999999999884

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=98.73  E-value=2.7e-08  Score=87.58  Aligned_cols=29  Identities=28%  Similarity=0.438  Sum_probs=25.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      ++.++|+|.|+.||||||+++.|++.++.
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            34468999999999999999999998854

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=98.67  E-value=8.5e-08  Score=84.12  Aligned_cols=26  Identities=27%  Similarity=0.367  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      .++|+|.|+.||||||+++.|++.++
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHHhC
Confidence            46799999999999999999998874

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=4.7e-09  Score=91.60  Aligned_cols=40  Identities=25%  Similarity=0.366  Sum_probs=33.4

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CceeehHHHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYG-------LVHIAAGDLLR  120 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg-------~~~i~~d~l~~  120 (303)
                      .+.|.+|+|+|++||||||+|+.|++.+.       ...|++|+++.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~  123 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH  123 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeEC
Confidence            45689999999999999999999999873       34688887753

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.52  E-value=3.1e-08  Score=84.15  Aligned_cols=118  Identities=15%  Similarity=0.207  Sum_probs=63.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC--CceeehHHHHHHHHHcCCcchHHHHHHHHcC----CCcChHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG--LVHIAAGDLLRAEIAAGSENGKRAKEHMEKG----QLVPDEIVVTMVKER  155 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg--~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g----~~~~~~~~~~~l~~~  155 (303)
                      ..|..|+|.|||||||||+|+.|++.++  +..++.|++....    ..............    ...........+...
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH----PNFDELVKLYEKDVVKHVTPYSNRMTEAIISRL  105 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTS----TTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHHh----ccCcccchhhhHHHHHHHHhhccchHHHHHHHH
Confidence            3567899999999999999999999984  5677777654211    00000000000000    000011122222222


Q ss_pred             HcCCCCCCCcEEEcCCCCCHHHHHH----HHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042          156 LSQPDSQENGWLLDGYPRSLSQATA----LKKYGFQPDLFILLEVPEDTLVERVVGR  208 (303)
Q Consensus       156 l~~~~~~~~~~Vldg~p~~~~~~~~----l~~~~~~pd~vI~L~~~~e~~~~Rl~~R  208 (303)
                      +..    ....++|...........    +...+ ....+++++++.+....|...|
T Consensus       106 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~R  157 (273)
T d1gvnb_         106 SDQ----GYNLVIEGTGRTTDVPIQTATMLQAKG-YETKMYVMAVPKINSYLGTIER  157 (273)
T ss_dssp             HHH----TCCEEECCCCCCSHHHHHHHHHHHTTT-CEEEEEEECCCHHHHHHHHHHH
T ss_pred             Hhh----CCCCcccccccchHHHHHHHHHHHHcC-CeEEEEecCCCchhhhhHHhcC
Confidence            222    345667764444333222    22233 2335678889999998888766

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.49  E-value=2.6e-08  Score=85.71  Aligned_cols=38  Identities=18%  Similarity=0.330  Sum_probs=28.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---CC--ceeehHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY---GL--VHIAAGDLL  119 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l---g~--~~i~~d~l~  119 (303)
                      .+.++|+|+|++||||||+++.|.+.|   |+  .+|+.|++.
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            356699999999999999999998876   33  478888775

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.45  E-value=6.2e-08  Score=81.25  Aligned_cols=39  Identities=31%  Similarity=0.409  Sum_probs=33.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh-HHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA-GDLLRAE  122 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~-d~l~~~~  122 (303)
                      |++|+|+|++||||||+|++|++++|+.+++. |.+.+..
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~l   40 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL   40 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHHH
Confidence            57999999999999999999999999999995 4444443

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=98.28  E-value=5.8e-05  Score=53.84  Aligned_cols=102  Identities=14%  Similarity=0.160  Sum_probs=65.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCCc
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG  165 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~  165 (303)
                      .|++.||..|=|||++..|++.+.++.|.-..+-                .-..|    .+.+.+.+ +.+..    ...
T Consensus         2 liilegpdccfkstvaaklskelkypiikgssfe----------------laksg----neklfehf-nklad----edn   56 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFE----------------LAKSG----NEKLFEHF-NKLAD----EDN   56 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHH----------------HHHHC----HHHHHHHH-HHHTT----CCS
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCchhh----------------hhhcc----CHHHHHHH-Hhhcc----ccc
Confidence            5789999999999999999999999988432211                00111    12121211 12222    355


Q ss_pred             EEEcCCC---------------CCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCC
Q 022042          166 WLLDGYP---------------RSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDP  212 (303)
Q Consensus       166 ~Vldg~p---------------~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~  212 (303)
                      +|+|.|.               .+..|...++..-..-..++||.+++.++.+|+.-|+...
T Consensus        57 viidrfvysnlvyakkfkdysilterqlrfiedkikakakvvylhadpsvikkrlrvrgdey  118 (164)
T d2axpa1          57 VIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEY  118 (164)
T ss_dssp             EEEESCHHHHHHHTTTBSSCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHTCSS
T ss_pred             eeeehhhhhhhHHHhhcccceehhHHHHHHHHHHhhhheeEEEEecChHHHHHHhccccccc
Confidence            7777532               2455665555533334579999999999999999886433

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.6e-06  Score=69.26  Aligned_cols=25  Identities=16%  Similarity=0.181  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      +.|+|+||+|+||+|+++.|.+.+.
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCC
Confidence            3688999999999999999998873

>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.07  E-value=4.8e-07  Score=49.25  Aligned_cols=30  Identities=83%  Similarity=1.383  Sum_probs=27.4

Q ss_pred             CCCCCCCCceecccCCCCCchHHHhhhccC
Q 022042          208 RRLDPVTGKIYHVKYSPPETDEIAARLTKR  237 (303)
Q Consensus       208 R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r  237 (303)
                      |+.|+.||++||+.|+||+.+++.+||.+|
T Consensus         2 RR~DP~TG~iYH~~f~ppp~~ei~~RLvqr   31 (31)
T d1zaka2           2 RRLDPVTGKIYHLKYSPPENEEIASRLTQR   31 (31)
T ss_dssp             EEECTTTCCEEESSSSCCCSSGGGGGCBCC
T ss_pred             CcCCCCCCcEeEEecCCCCCHHHHHHHhcC
Confidence            567999999999999999999999999875

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.98  E-value=2e-06  Score=73.68  Aligned_cols=40  Identities=25%  Similarity=0.285  Sum_probs=31.9

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHh--------CCceeehHHHH
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKY--------GLVHIAAGDLL  119 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l--------g~~~i~~d~l~  119 (303)
                      .++.|.+|+|.|++||||||+|..|.+.+        .+..+|+|+++
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY   70 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   70 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC
Confidence            35568999999999999999998876554        24568999874

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=2.2e-06  Score=66.89  Aligned_cols=24  Identities=13%  Similarity=0.087  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ++|+|+|++|||||||++.|++++
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            489999999999999999999876

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.90  E-value=2.9e-06  Score=66.86  Aligned_cols=26  Identities=42%  Similarity=0.686  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      |.|+|+|++||||||+++.|+..++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCC
Confidence            57999999999999999999998854

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.86  E-value=4.9e-06  Score=69.02  Aligned_cols=30  Identities=20%  Similarity=0.321  Sum_probs=26.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      +.++|.||||+||||+|+.|++++++.++.
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~~~~   65 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTNIHV   65 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCCccc
Confidence            467899999999999999999999887654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=8.7e-06  Score=68.71  Aligned_cols=32  Identities=19%  Similarity=0.376  Sum_probs=28.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      +.-|++.||||||||++++.||+.+|.+++.+
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i   76 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI   76 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHcCCCEEEE
Confidence            45688999999999999999999999877554

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.76  E-value=7.6e-06  Score=64.00  Aligned_cols=25  Identities=24%  Similarity=0.022  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      |++|.|+|.+||||||++.+|.++|
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            5688999999999999999999877

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.73  E-value=9.6e-06  Score=68.08  Aligned_cols=36  Identities=22%  Similarity=0.448  Sum_probs=29.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh--HHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA--GDLL  119 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~--d~l~  119 (303)
                      +.-|++.||||+|||++++.|++.+|++++.+  .+++
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~   79 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV   79 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhh
Confidence            45689999999999999999999999877554  4444

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.72  E-value=1.1e-05  Score=67.58  Aligned_cols=31  Identities=26%  Similarity=0.459  Sum_probs=27.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      .-|+|.||||||||++|+.||+.+|++++.+
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i   71 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEESNFPFIKI   71 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             eEEEEECcCCCCHHHHHHHHhhccccccccc
Confidence            4588999999999999999999999887754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=8e-06  Score=64.11  Aligned_cols=24  Identities=25%  Similarity=0.410  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +.|+|+|+||+||||+++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            368999999999999999999987

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.71  E-value=1.2e-05  Score=66.65  Aligned_cols=31  Identities=23%  Similarity=0.362  Sum_probs=27.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      +.-++|.||||+||||+|+.|++.+++.+..
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~   65 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRV   65 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence            4568899999999999999999999887654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=1.6e-05  Score=66.30  Aligned_cols=29  Identities=28%  Similarity=0.470  Sum_probs=26.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      ..++|.||||+||||+++.||+.+++.++
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            47889999999999999999999987655

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.63  E-value=0.00036  Score=56.08  Aligned_cols=47  Identities=13%  Similarity=0.258  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042          242 EEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE  292 (303)
Q Consensus       242 ~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~  292 (303)
                      ++.+++|+.........+...|+   ++|.+ .+.++.+++|.++|.++..
T Consensus       142 ~~~i~~r~~~~~~~e~~~~~~fd---~vI~N-ddle~a~~~l~~iI~~~~~  188 (199)
T d1kjwa2         142 EEQARKAFDRATKLEQEFTECFS---AIVEG-DSFEEIYHKVKRVIEDLSG  188 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGCS---EEECC-SSHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHhhccCC---EEEEC-cCHHHHHHHHHHHHHHhcC
Confidence            55666776655443333333332   33433 5788889988888876543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.59  E-value=1.8e-05  Score=68.61  Aligned_cols=35  Identities=17%  Similarity=0.280  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCce--eehHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVH--IAAGDL  118 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~--i~~d~l  118 (303)
                      +.-|++.||||||||.+|+.||+.++.++  +++.++
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~   85 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF   85 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CceEEEECCCCCCHHHHHHHHhhccccchhccccccc
Confidence            35678999999999999999999997654  444444

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=3.3e-05  Score=65.38  Aligned_cols=33  Identities=18%  Similarity=0.279  Sum_probs=28.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAG  116 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d  116 (303)
                      +.-|+|.||||+|||++++.||..+|.+++.++
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~   73 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQANFISIK   73 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhCCcEEEEE
Confidence            456899999999999999999999998776553

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=4.7e-05  Score=64.06  Aligned_cols=32  Identities=22%  Similarity=0.428  Sum_probs=27.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      +.-|+|.||||||||++++.++..++.+++.+
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~~~~~~i   69 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETGAFFFLI   69 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CceeEEecCCCCCchHHHHHHHHHhCCeEEEE
Confidence            44688999999999999999999999876654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.38  E-value=5.8e-05  Score=66.69  Aligned_cols=34  Identities=21%  Similarity=0.156  Sum_probs=30.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA  115 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~  115 (303)
                      ++...+++.||||+|||++|+.|++.+|..++++
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            4456899999999999999999999999988765

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.38  E-value=5.2e-05  Score=62.38  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ++|+|+|++||||||+.++|.+++
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Confidence            589999999999999999998766

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.37  E-value=3.1e-05  Score=63.69  Aligned_cols=28  Identities=18%  Similarity=0.236  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      +...++|.||||+||||+++.|+++++.
T Consensus        44 ~~~~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          44 SMPHLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHh
Confidence            3346889999999999999999998743

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.35  E-value=4.6e-05  Score=69.16  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=29.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAG  116 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d  116 (303)
                      +..|++.||+|||||.+|+.||+.++.+++.+|
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~d   81 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   81 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence            558999999999999999999999998887653

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.26  E-value=9.3e-05  Score=61.52  Aligned_cols=28  Identities=21%  Similarity=0.283  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ..+..++|.||||+||||+++.|++.+.
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            3456899999999999999999999873

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=6.2e-05  Score=61.56  Aligned_cols=27  Identities=26%  Similarity=0.313  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      ..++|.||||+||||+|+.|++.++..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~l~~~   63 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHELLGR   63 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             CeEEEECCCCCCchhhHHHHHHHHhcc
Confidence            347799999999999999999987643

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00013  Score=63.39  Aligned_cols=29  Identities=24%  Similarity=0.333  Sum_probs=25.6

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...+..+|+|+|+||+||||+...|..++
T Consensus        50 ~~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          50 YCGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ccCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            44567899999999999999999998876

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00067  Score=54.71  Aligned_cols=27  Identities=11%  Similarity=0.121  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      -|.-++|.||+|+||||+|+.+++.+.
T Consensus        23 l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          23 GHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            355688999999999999999999874

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.15  E-value=0.00019  Score=55.42  Aligned_cols=30  Identities=17%  Similarity=0.244  Sum_probs=26.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      ..+.+|++.|.-||||||+++.|++.+|..
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            345689999999999999999999999863

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.14  E-value=0.00017  Score=62.61  Aligned_cols=29  Identities=24%  Similarity=0.426  Sum_probs=25.5

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...+..+|+|+|+||+||||+...|.+++
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            44567899999999999999999999875

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00015  Score=59.45  Aligned_cols=24  Identities=17%  Similarity=0.412  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..++|+||+|+||||+++.|++++
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHHH
Confidence            347899999999999999999985

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.06  E-value=0.00021  Score=58.13  Aligned_cols=28  Identities=29%  Similarity=0.609  Sum_probs=24.4

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+|.+|+++||+|+||||.+-.||.+|
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3567799999999999999988898776

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.05  E-value=0.00021  Score=57.94  Aligned_cols=28  Identities=18%  Similarity=0.274  Sum_probs=24.4

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..++.+|+++||+|+||||.+-.||.++
T Consensus         3 ~~~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           3 EPKGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             CCSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3567799999999999999998898876

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00016  Score=59.80  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +..++|.||+|+||||+++.+++.+
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhh
Confidence            3457899999999999999999986

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.99  E-value=0.00023  Score=57.83  Aligned_cols=27  Identities=30%  Similarity=0.429  Sum_probs=20.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ++|.+|++.||+|+||||.+-.||.+|
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999998898876

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00028  Score=57.25  Aligned_cols=28  Identities=21%  Similarity=0.421  Sum_probs=24.6

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+|.+|++.||+|+||||.+-.||.++
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999999776

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00023  Score=58.02  Aligned_cols=25  Identities=16%  Similarity=0.332  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ..++|.||+|+||||+++.|+++++
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHHhh
Confidence            3477999999999999999999874

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00029  Score=60.90  Aligned_cols=28  Identities=14%  Similarity=0.331  Sum_probs=25.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      .++++||+|+|||.+|+.||+.++.+++
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~~~~i   81 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALGIELL   81 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEEECCCcchhHHHHHHHHhhccCCee
Confidence            6889999999999999999999986554

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.94  E-value=0.00014  Score=60.67  Aligned_cols=23  Identities=17%  Similarity=0.101  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .++|.||||+||||+++.+++.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999986

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.83  E-value=0.00076  Score=55.16  Aligned_cols=26  Identities=23%  Similarity=0.261  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +.-+++|.|+||||||++|..++...
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998875

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.80  E-value=0.00049  Score=55.65  Aligned_cols=27  Identities=22%  Similarity=0.241  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .++.+|++.||+|+||||.+-.||.+|
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            345688999999999999999998876

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.76  E-value=0.00043  Score=52.50  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ++|+|.|.+|+||||+.++|...
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999998653

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.69  E-value=0.00037  Score=60.15  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           86 KIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ++++.||||+|||.+|+.||...|
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHHhc
Confidence            455689999999999999999975

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.65  E-value=0.00054  Score=53.15  Aligned_cols=29  Identities=21%  Similarity=0.269  Sum_probs=23.9

Q ss_pred             hcccCCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           78 ASATVEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        78 ~~~~~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ....++..+|+|.|.+|+|||||..+|..
T Consensus         7 ~~~~~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_           7 LGLYKKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             HTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             ccccCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            33446678999999999999999998854

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.63  E-value=0.00071  Score=55.92  Aligned_cols=29  Identities=14%  Similarity=0.153  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCce
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVH  112 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~  112 (303)
                      ...|+|.|++|+|||++++.+++..+..+
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~~~~~   57 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINELNLPY   57 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHCCCCe
Confidence            34788999999999999999999887544

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0006  Score=56.04  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+.-+++|.||.||||||+.+.|+--
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcC
Confidence            34569999999999999999999653

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.00058  Score=56.53  Aligned_cols=27  Identities=37%  Similarity=0.405  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+..+|+|+|++||||||+++.|..-+
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            455689999999999999999997755

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.52  E-value=0.00061  Score=55.96  Aligned_cols=26  Identities=31%  Similarity=0.261  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+.-+++|.|++||||||+.+.|+--
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCCcchhhHhccCC
Confidence            35568999999999999999988653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.49  E-value=0.00059  Score=56.94  Aligned_cols=27  Identities=30%  Similarity=0.401  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|+|++||||||+++.|..-+
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhccc
Confidence            455689999999999999999997654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.48  E-value=0.0011  Score=50.53  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +-+.|+|.|.+|+|||||.++|..
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHhC
Confidence            446899999999999999999865

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.48  E-value=0.00085  Score=59.00  Aligned_cols=30  Identities=17%  Similarity=0.282  Sum_probs=25.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      +..|++.||+|+|||.+|+.||+.++.+++
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~~~~~i   97 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHLDIPIA   97 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhccccee
Confidence            456889999999999999999998865543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.47  E-value=0.0007  Score=56.07  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...-+++|.|++||||||+.+.|+.-+
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            455799999999999999999997654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.00065  Score=56.14  Aligned_cols=25  Identities=20%  Similarity=0.149  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+.-+++|.|++||||||+.+.|+-
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcC
Confidence            4556899999999999999999954

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00079  Score=56.05  Aligned_cols=27  Identities=26%  Similarity=0.337  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.-+++|+|++||||||+++.|..-+
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            456799999999999999999997655

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.44  E-value=0.00079  Score=55.61  Aligned_cols=26  Identities=19%  Similarity=0.252  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..-+++|.|+.||||||+.+.|+.-+
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            45689999999999999999997543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00093  Score=52.91  Aligned_cols=25  Identities=16%  Similarity=0.169  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..++.|.|+|||||||+|..|+-+.
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999998754

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.39  E-value=0.00087  Score=55.27  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +++|.||.||||||+.+.|+.-+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            77899999999999999997644

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.38  E-value=0.00099  Score=54.93  Aligned_cols=27  Identities=19%  Similarity=0.214  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.-+++|.|+.||||||+.+.|+.-+
T Consensus        30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          30 KDGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            345689999999999999999997644

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.001  Score=54.65  Aligned_cols=27  Identities=19%  Similarity=0.277  Sum_probs=23.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      |..++|.|++|+||||+|+.+++.++.
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            456889999999999999999998853

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.36  E-value=0.0019  Score=52.17  Aligned_cols=36  Identities=22%  Similarity=0.282  Sum_probs=28.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh-----CCceeehHHHHHHH
Q 022042           87 IMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLLRAE  122 (303)
Q Consensus        87 I~I~G~pGSGKSTla~~La~~l-----g~~~i~~d~l~~~~  122 (303)
                      ++|.|++|+|||.+++.++.++     ...+++..++....
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~   79 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM   79 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHH
Confidence            7899999999999999999886     34567777666543

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.35  E-value=0.001  Score=52.19  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=27.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAG  116 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d  116 (303)
                      ..+-|+|.|++|+||||+|-.|.++ |...++-|
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD   45 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR-GHRLIADD   45 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecC
Confidence            4456899999999999999999875 88777544

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.34  E-value=0.00069  Score=54.46  Aligned_cols=27  Identities=19%  Similarity=0.117  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .++-+++|.|+.||||||+.+.|+.-+
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhccc
Confidence            455689999999999999999997644

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.34  E-value=0.0012  Score=51.02  Aligned_cols=25  Identities=24%  Similarity=0.231  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ++-++|+|+|.+||||||+..+|..
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc
Confidence            4457899999999999999999864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.32  E-value=0.001  Score=56.31  Aligned_cols=27  Identities=26%  Similarity=0.286  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.-+++|.|+.||||||+.+.|+..+
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            456789999999999999999997655

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.27  E-value=0.00076  Score=55.30  Aligned_cols=27  Identities=26%  Similarity=0.164  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.-+++|.||.||||||+.+.|+--+
T Consensus        24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            345689999999999999999997643

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.24  E-value=0.0013  Score=50.30  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      -++|+|.|.+|+|||||.++|..
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHcC
Confidence            35799999999999999999854

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.22  E-value=0.0019  Score=47.06  Aligned_cols=28  Identities=4%  Similarity=0.135  Sum_probs=25.0

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .++...|+++|.+||||+|+|+.|...|
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999999998877

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.19  E-value=0.0012  Score=55.18  Aligned_cols=25  Identities=32%  Similarity=0.198  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+.-+++|.|+.||||||+++.|+-
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHc
Confidence            3456899999999999999999964

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.14  E-value=0.0011  Score=51.95  Aligned_cols=33  Identities=12%  Similarity=0.207  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAG  116 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d  116 (303)
                      ...-|+|.|++|+||||+|-.|.++ |...++-|
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD   46 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK-NHLFVGDD   46 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCceecCC
Confidence            3456889999999999999999764 87777554

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.12  E-value=0.00079  Score=55.64  Aligned_cols=26  Identities=23%  Similarity=0.222  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+.-+++|.|++||||||+.+.|+--
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            34569999999999999999999764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.11  E-value=0.0016  Score=50.69  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAG  116 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d  116 (303)
                      ..+=|+|.|++|+||||++-.|.++ |...++-|
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD   46 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR-GHRLVADD   46 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCC
Confidence            4457899999999999999888876 87776544

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.07  E-value=0.00095  Score=55.68  Aligned_cols=28  Identities=25%  Similarity=0.325  Sum_probs=23.8

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      -.+..+++|+|++||||||+.+.|..-+
T Consensus        41 i~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          41 IEKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            3456799999999999999999997654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.07  E-value=0.0015  Score=51.63  Aligned_cols=21  Identities=19%  Similarity=0.298  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIK  105 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La  105 (303)
                      +.|+|.|.||+||||+.+.|.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhc
Confidence            379999999999999999996

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.06  E-value=0.002  Score=49.83  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+...|+|.|.+|+||||+.++|..
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhc
Confidence            3457899999999999999998843

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.0019  Score=48.66  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +|+|.|.+|+|||||..+|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999764

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.0015  Score=53.03  Aligned_cols=25  Identities=16%  Similarity=0.202  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ...++.|.|+|||||||+|-.++-.
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3458999999999999999988643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.96  E-value=0.0011  Score=57.23  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      -|+|.|+||+||||+|+.|++-+
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHS
T ss_pred             eEEEECCCCccHHHHHHHHHHhC
Confidence            58899999999999999999866

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0022  Score=48.74  Aligned_cols=22  Identities=27%  Similarity=0.608  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +.|+|.|.+++|||||.++|..
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5799999999999999999974

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.0018  Score=52.67  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ++++|+|..||||||+.++|.+..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC
Confidence            578999999999999999998754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.0025  Score=48.81  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+|+|.|.+|+|||||.++|..
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999998875

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.92  E-value=0.0024  Score=52.13  Aligned_cols=27  Identities=15%  Similarity=0.032  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +...+++|.|+|||||||+|-.++.+.
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            344689999999999999999887653

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.90  E-value=0.0018  Score=53.49  Aligned_cols=27  Identities=22%  Similarity=0.185  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.-+++|.||.||||||+.+.|+--+
T Consensus        30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          30 PRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            455699999999999999999996543

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.00084  Score=38.46  Aligned_cols=33  Identities=36%  Similarity=0.716  Sum_probs=26.9

Q ss_pred             CCCCCCCCceecccCCCCCchHHHh----hhccCCCC
Q 022042          208 RRLDPVTGKIYHVKYSPPETDEIAA----RLTKRFDD  240 (303)
Q Consensus       208 R~~~~~~g~~~~~~~~~p~~~~i~~----rL~~r~~d  240 (303)
                      |+.++.+|+.||+.|+||..+++++    .|.+|.+|
T Consensus         2 Rr~C~~cG~~Yh~~~~ppk~~g~CD~cg~~L~qR~DD   38 (38)
T d1akya2           2 RLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDD   38 (38)
T ss_dssp             EEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCTTC
T ss_pred             ccCCcCccchhhhhccCcCcCCccCCCCCEeeecCCC
Confidence            5678899999999999999987753    57777664

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.0034  Score=49.93  Aligned_cols=24  Identities=21%  Similarity=0.338  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..++|.|+||+|||++++.||+++
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHH
Confidence            468899999999999999999865

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.85  E-value=0.0034  Score=52.72  Aligned_cols=27  Identities=19%  Similarity=0.341  Sum_probs=23.1

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .....+|+|.|+.|.||||+|+.+.++
T Consensus        41 ~~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          41 DLDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             TSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHh
Confidence            344568999999999999999998775

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.83  E-value=0.0024  Score=54.83  Aligned_cols=23  Identities=13%  Similarity=0.280  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+++.||+|+|||.+|+.||+.+
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHh
Confidence            67899999999999999999986

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.81  E-value=0.0029  Score=48.68  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+|+|.|.+|+||||+.++|...
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHcC
Confidence            57999999999999999998753

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.0026  Score=50.38  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +.|+|.|.|++|||||.++|...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.003  Score=51.42  Aligned_cols=26  Identities=12%  Similarity=-0.066  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +...++.|.|+||||||++|..++..
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34569999999999999999999864

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.003  Score=48.38  Aligned_cols=25  Identities=16%  Similarity=0.238  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +-..|+|.|.+|+|||||.++|...
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhC
Confidence            3468999999999999999998753

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.78  E-value=0.0031  Score=48.23  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +.|+|.|++|+||||+.++|..
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            4788999999999999999865

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.77  E-value=0.0027  Score=48.88  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~  106 (303)
                      .|+|.|.+|+||||+.++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999999964

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.74  E-value=0.0022  Score=53.30  Aligned_cols=27  Identities=26%  Similarity=0.218  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.-+++|.|+.||||||+.+.|+-.+
T Consensus        28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          28 NKGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            345689999999999999999996544

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.72  E-value=0.0026  Score=52.38  Aligned_cols=27  Identities=22%  Similarity=0.192  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+-+++|.|+.||||||+.+.|+..+
T Consensus        26 ~~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          26 EEGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345689999999999999999997654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0029  Score=48.49  Aligned_cols=24  Identities=29%  Similarity=0.274  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +...|+|.|.+|+|||||.++|..
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCcCHHHHHHHHHh
Confidence            346899999999999999999865

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0034  Score=48.46  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+|+|.|.+|+||||+.+++..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            4789999999999999998864

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.67  E-value=0.004  Score=48.41  Aligned_cols=25  Identities=36%  Similarity=0.570  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ..+.|+|+|.+|+|||||.++|...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3578999999999999999999653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0022  Score=52.58  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+-+++|.|+.||||||+.+.|+.
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            456899999999999999999975

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0034  Score=49.04  Aligned_cols=22  Identities=23%  Similarity=0.293  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+|+|.|.+|+||||++++|..
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            4789999999999999999864

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.0037  Score=48.20  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+|+|.|.+|+||||+..+|..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            4689999999999999998864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.0035  Score=47.94  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+|+|.|.+|+||||+.++|..
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999999865

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0038  Score=48.32  Aligned_cols=22  Identities=18%  Similarity=0.368  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +.|+|.|.+|+||||+.++|..
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999998865

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0036  Score=48.20  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+|+|.|.+|+||||+.++|...
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            57999999999999999999763

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.62  E-value=0.0032  Score=48.31  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +..+|+|.|.+|+||||+.++|..
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh
Confidence            346799999999999999999875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0037  Score=48.20  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ++|+|.|.+|+||||+.++|..
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999999865

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.57  E-value=0.004  Score=47.46  Aligned_cols=22  Identities=23%  Similarity=0.271  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..|+|.|.+|+||||+.+++..
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999999875

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.57  E-value=0.0037  Score=49.70  Aligned_cols=22  Identities=18%  Similarity=0.155  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .|+|.|++|+||||+.++|...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999763

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0038  Score=48.69  Aligned_cols=26  Identities=19%  Similarity=0.198  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ++..+|+|.|.+|+|||++.++|.+.
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhC
Confidence            34568999999999999999988753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.53  E-value=0.0029  Score=48.85  Aligned_cols=25  Identities=28%  Similarity=0.343  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ++.+.|+|.|.+|+||||+.++|..
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc
Confidence            4557899999999999999998854

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.0052  Score=51.38  Aligned_cols=24  Identities=17%  Similarity=0.190  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..++|+|+||+|||++++.|++++
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHH
Confidence            478899999999999999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.47  E-value=0.0033  Score=48.93  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=22.1

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHH
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIK  105 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La  105 (303)
                      ...+-..|+|.|.+|+||||+.++|.
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHh
Confidence            44566789999999999999998874

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0047  Score=47.24  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+|+|.|.+|+||||+.++|..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4789999999999999999875

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.47  E-value=0.0025  Score=54.89  Aligned_cols=25  Identities=28%  Similarity=0.341  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ..|+|+|++||||||+.+.|....+
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCEEEEeeccccchHHHHHHhhhcc
Confidence            4689999999999999999988763

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.46  E-value=0.0034  Score=48.69  Aligned_cols=21  Identities=24%  Similarity=0.335  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~  106 (303)
                      -|+|.|.|++|||||.+.|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999964

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.43  E-value=0.0048  Score=48.07  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ++|+|.|.+|+||||+.++|..
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999998865

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.005  Score=47.14  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+|+|.|.+|+|||||.+++..
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4789999999999999999875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.005  Score=47.10  Aligned_cols=24  Identities=17%  Similarity=0.284  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +...|+|.|.+|+|||++.+++..
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Confidence            345799999999999999999865

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0053  Score=47.18  Aligned_cols=22  Identities=14%  Similarity=0.293  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..|+|.|.+|+|||||.+++..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999875

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.35  E-value=0.0047  Score=47.81  Aligned_cols=23  Identities=26%  Similarity=0.232  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+|+|.|.+|+||||+.++|...
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            37999999999999999999753

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.32  E-value=0.0053  Score=49.49  Aligned_cols=26  Identities=15%  Similarity=0.006  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...+++|.|+||+|||++|..++-..
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999998754

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0058  Score=47.11  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ...|+|.|.+|+|||||.++|..
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            35899999999999999998875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.0058  Score=47.08  Aligned_cols=22  Identities=18%  Similarity=0.321  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+|+|.|.+|+||||+.++|..
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3699999999999999998865

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.28  E-value=0.0054  Score=48.32  Aligned_cols=22  Identities=18%  Similarity=0.356  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..|+|.|.+|+||||+.++|..
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhh
Confidence            5799999999999999999875

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.0036  Score=48.32  Aligned_cols=24  Identities=13%  Similarity=0.382  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ....|+|.|.|++|||||.++|..
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhC
Confidence            346899999999999999998844

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0065  Score=46.58  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..|+|.|.+|+|||++.+++..
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999998865

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0067  Score=46.53  Aligned_cols=22  Identities=23%  Similarity=0.370  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..|+|.|.+|+|||||..+|..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4789999999999999999975

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.15  E-value=0.0019  Score=49.04  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +.|+|.|.|++||||+.++|...
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.12  E-value=0.0053  Score=49.18  Aligned_cols=24  Identities=17%  Similarity=0.106  Sum_probs=20.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+.++.|.|+||+|||++|..++-
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            446899999999999999976653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.007  Score=46.79  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+|+|.|.+|+||||+.++|..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999999865

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.12  E-value=0.0066  Score=48.30  Aligned_cols=33  Identities=12%  Similarity=-0.001  Sum_probs=27.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIA  114 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~  114 (303)
                      ++...|+|.|||++|||++|..|.+-++..+++
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis   83 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   83 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhCCEEEe
Confidence            444689999999999999999999988765554

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0059  Score=46.67  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+|+|.|.+|+||||+..+|..
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999875

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0059  Score=47.88  Aligned_cols=23  Identities=22%  Similarity=0.211  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ...|+|.|.+|+|||++..++..
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            46899999999999999988865

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0056  Score=47.83  Aligned_cols=22  Identities=27%  Similarity=0.255  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+|+|.|.+|+|||++.++|..
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhh
Confidence            5799999999999999999875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.007  Score=46.36  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..|+|.|.+|+|||||.+++..
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3688999999999999998864

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.0075  Score=46.21  Aligned_cols=22  Identities=23%  Similarity=0.274  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+|+|.|.+|+|||++.+++..
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999876

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.03  E-value=0.0044  Score=48.24  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~  106 (303)
                      -|+|+|.|++|||||.++|..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999999853

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.03  E-value=0.0012  Score=37.47  Aligned_cols=26  Identities=31%  Similarity=0.770  Sum_probs=22.2

Q ss_pred             CCCCCCCCceecccCCCCCchHHHhh
Q 022042          208 RRLDPVTGKIYHVKYSPPETDEIAAR  233 (303)
Q Consensus       208 R~~~~~~g~~~~~~~~~p~~~~i~~r  233 (303)
                      |+.++.+|+.||+.|+||..+++++.
T Consensus         2 R~vc~~cG~~Yh~~~~pPk~~g~CD~   27 (37)
T d2ak3a2           2 RWIHPGSGRVYNIEFNPPKTMGIDDL   27 (37)
T ss_dssp             EEEETTTTEEEETTTBCCSSTTBCTT
T ss_pred             ceeeCCcCChhhhccCCccccCCccC
Confidence            56788999999999999999887653

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=0.0062  Score=46.85  Aligned_cols=21  Identities=33%  Similarity=0.376  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~  106 (303)
                      +|+|.|.+++|||||.++|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999999964

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.007  Score=46.00  Aligned_cols=21  Identities=19%  Similarity=0.241  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~  106 (303)
                      +|+|.|.+|+||||+.++|..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            688999999999999999875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0075  Score=46.54  Aligned_cols=23  Identities=26%  Similarity=0.276  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+|+|.|.+|+|||+|..++...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36889999999999999988763

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.95  E-value=0.0084  Score=45.89  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ..+|+|.|.+|+|||+|.+++...
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC
Confidence            357999999999999999988653

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.91  E-value=0.0074  Score=49.99  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ...+.|+|.|.+|+||||+.+.|..
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhC
Confidence            4568999999999999999999954

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.011  Score=49.17  Aligned_cols=36  Identities=14%  Similarity=0.204  Sum_probs=28.1

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh---CC--ceeehH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY---GL--VHIAAG  116 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l---g~--~~i~~d  116 (303)
                      +..|.+|+++|.=|+||||++-.||..+   |.  ..|++|
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4457799999999999999988888876   54  345554

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0083  Score=45.95  Aligned_cols=21  Identities=29%  Similarity=0.602  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~  106 (303)
                      .|+|.|.+|+||||+.++|..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhC
Confidence            688999999999999998854

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.84  E-value=0.0094  Score=45.66  Aligned_cols=22  Identities=18%  Similarity=0.232  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .+|+|.|.+|+||||+.+++..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3799999999999999999864

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.011  Score=46.85  Aligned_cols=28  Identities=14%  Similarity=0.241  Sum_probs=23.5

Q ss_pred             eEEEEEcCC-CCCHHHHHHHHHHHh---CCce
Q 022042           85 LKIMISGAP-ASGKGTQCELIKEKY---GLVH  112 (303)
Q Consensus        85 ~~I~I~G~p-GSGKSTla~~La~~l---g~~~  112 (303)
                      ++++|+|.- |+||||++-.|+..+   |+.+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rV   33 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRT   33 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeE
Confidence            579999995 999999999998877   5543

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.0086  Score=52.19  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=17.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIK  105 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La  105 (303)
                      ..+.+|+|+||+||||+...+.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHH
Confidence            3589999999999999875443

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.75  E-value=0.011  Score=49.13  Aligned_cols=24  Identities=21%  Similarity=0.176  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .-+++|.|+||+||||++..|+-.
T Consensus        35 G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          35 GEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHh
Confidence            458999999999999999888754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.73  E-value=0.0055  Score=47.45  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~  106 (303)
                      -|+|.|.|++||||+.++|..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378999999999999999854

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.72  E-value=0.0098  Score=52.61  Aligned_cols=27  Identities=22%  Similarity=0.212  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ..-+|+|+||.||||||....+.+.++
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            335788999999999999988888763

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.63  E-value=0.0059  Score=47.02  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=9.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..|+|.|.+|+||||+.++|..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999998864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.011  Score=45.46  Aligned_cols=22  Identities=18%  Similarity=0.447  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..|+|.|.+|+|||||.+++..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4789999999999999998864

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.54  E-value=0.012  Score=47.51  Aligned_cols=26  Identities=19%  Similarity=0.198  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ++++|+|.|-+.+|||||...|....
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhc
Confidence            44679999999999999999997653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.48  E-value=0.012  Score=45.95  Aligned_cols=20  Identities=40%  Similarity=0.547  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELI  104 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~L  104 (303)
                      ..|+|.|.+|+||||+.+++
T Consensus         3 iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            57999999999999999998

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.48  E-value=0.012  Score=45.63  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+|+|.|.+|+|||++.+++...
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999988763

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.46  E-value=0.011  Score=47.88  Aligned_cols=25  Identities=16%  Similarity=0.181  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +.+..++.|.+|+|||||.+.|...
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcch
Confidence            3567899999999999999999543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.009  Score=45.87  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..|+|.|.+|+||||+.+++..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3688999999999999988754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.13  E-value=0.017  Score=44.18  Aligned_cols=22  Identities=18%  Similarity=0.270  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..|+|.|.+|+||||+.+++..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5788999999999999998865

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.11  E-value=0.013  Score=49.04  Aligned_cols=15  Identities=20%  Similarity=0.282  Sum_probs=12.5

Q ss_pred             EEEEcCCCCCHHHHH
Q 022042           87 IMISGAPASGKGTQC  101 (303)
Q Consensus        87 I~I~G~pGSGKSTla  101 (303)
                      ++|.|+|||||||++
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            457799999999864

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.08  E-value=0.017  Score=45.81  Aligned_cols=28  Identities=21%  Similarity=0.151  Sum_probs=24.3

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +..+.-++|.|++|+||||+|..|++.+
T Consensus        12 ~~~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          12 KSEGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             TCSSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999999865

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.02  E-value=0.016  Score=47.76  Aligned_cols=24  Identities=8%  Similarity=0.025  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.+|.|++|+||||++-.|+..+
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            478899999999999999988763

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.99  E-value=0.021  Score=41.87  Aligned_cols=28  Identities=18%  Similarity=0.114  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      -...+|.+|.|||||+++-.+..+.|..
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~~~~~~   35 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYAAQGYK   35 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHHTTTCC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            3577899999999999987766666643

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.93  E-value=0.015  Score=45.05  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..|.|.|.|.+|||||.++|.+
T Consensus         6 inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEEeCCCCcHHHHHHHHHH
Confidence            4799999999999999999964

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.021  Score=44.08  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..|+|.|.+|+||||+..++..
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999998865

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.78  E-value=0.025  Score=46.99  Aligned_cols=30  Identities=20%  Similarity=0.212  Sum_probs=25.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      .+...++|.|++++|||+++..|.+-+|..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~  131 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY  131 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhcch
Confidence            445689999999999999999999988743

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.77  E-value=0.017  Score=48.64  Aligned_cols=15  Identities=27%  Similarity=0.395  Sum_probs=12.6

Q ss_pred             EEEEcCCCCCHHHHH
Q 022042           87 IMISGAPASGKGTQC  101 (303)
Q Consensus        87 I~I~G~pGSGKSTla  101 (303)
                      ++|.|+|||||||++
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            567899999999764

>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=93.76  E-value=0.0079  Score=32.23  Aligned_cols=22  Identities=27%  Similarity=0.647  Sum_probs=18.8

Q ss_pred             CCCCceecccCCCCCchHHHhh
Q 022042          212 PVTGKIYHVKYSPPETDEIAAR  233 (303)
Q Consensus       212 ~~~g~~~~~~~~~p~~~~i~~r  233 (303)
                      +.+|+.||+.|+||..+++++.
T Consensus         1 P~sG~~Yhv~f~PPk~~g~cD~   22 (30)
T d1ak2a2           1 PQSGRSYHEEFNPPKEPMKDDI   22 (30)
T ss_dssp             TTTCCEEBTTTBCCSSTTBCTT
T ss_pred             CCCCCCccccccCCCCCCccCC
Confidence            4689999999999999887654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.70  E-value=0.021  Score=45.41  Aligned_cols=25  Identities=16%  Similarity=0.109  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      ..|+|.|-+++|||||+.+|....|
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            5799999999999999999975543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.022  Score=47.23  Aligned_cols=25  Identities=24%  Similarity=0.137  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..++.|.|+|||||||+|-.++...
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHH
Confidence            3588999999999999998887765

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.50  E-value=0.017  Score=50.67  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .++|+|+||+|||++++.||+++
T Consensus        45 n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHHHH
Confidence            56788999999999999999864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.38  E-value=0.025  Score=43.84  Aligned_cols=24  Identities=29%  Similarity=0.392  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..|+|.|..|+|||++..++....
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            579999999999999999996653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.30  E-value=0.023  Score=45.62  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      -..|+|.|..|+||||+.+++...
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcC
Confidence            357899999999999999998543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.08  E-value=0.026  Score=46.23  Aligned_cols=23  Identities=26%  Similarity=0.458  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      -|+|.|++|+||+++|+.|...-
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEECCCCcCHHHHHHHHHHhc
Confidence            36789999999999999997643

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.01  E-value=0.041  Score=45.30  Aligned_cols=36  Identities=25%  Similarity=0.254  Sum_probs=26.8

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh---CC--ceeehH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY---GL--VHIAAG  116 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l---g~--~~i~~d  116 (303)
                      .....+|+++|.=|+||||++-.||..+   |.  ..|+.|
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3445789999999999999987777766   44  345554

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.86  E-value=0.028  Score=49.47  Aligned_cols=24  Identities=21%  Similarity=0.441  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIK  105 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La  105 (303)
                      ..+..|+|+|.+|+||||+.+.|.
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHh
Confidence            356889999999999999999995

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.71  E-value=0.011  Score=48.07  Aligned_cols=25  Identities=16%  Similarity=0.288  Sum_probs=20.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      +....+|.|.+|+|||||.+.|...
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ccceEEEECCCCccHHHHHHhhccH
Confidence            3457789999999999999999543

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=92.62  E-value=0.045  Score=44.91  Aligned_cols=33  Identities=18%  Similarity=0.263  Sum_probs=26.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh---CC--ceeehH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY---GL--VHIAAG  116 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l---g~--~~i~~d  116 (303)
                      |+.|+|.|.=|+||||++-.|+..+   |.  ..|+.|
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D   38 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD   38 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            5688999999999999998888776   44  346655

>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Escherichia coli [TaxId: 562]

Probab=92.60  E-value=0.0073  Score=33.72  Aligned_cols=26  Identities=35%  Similarity=0.820  Sum_probs=21.9

Q ss_pred             CCCCCCCCceecccCCCCCchHHHhh
Q 022042          208 RRLDPVTGKIYHVKYSPPETDEIAAR  233 (303)
Q Consensus       208 R~~~~~~g~~~~~~~~~p~~~~i~~r  233 (303)
                      |+.++.+|+.||+.|+||..+++++.
T Consensus         2 Rr~c~~cG~~Yh~~~~PPk~~g~CD~   27 (35)
T d1e4va2           2 RRVHAPSGRVYHVKFNPPKVEGKDDV   27 (35)
T ss_dssp             EEEETTTTEEEETTTBCCSSTTBCTT
T ss_pred             ccCCcCcCChhhhccCccccCCcccC
Confidence            55678999999999999998887653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.58  E-value=0.041  Score=42.32  Aligned_cols=23  Identities=35%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ..|+|.|..|+|||++.+++...
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            47899999999999999998654

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.41  E-value=0.027  Score=43.91  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           86 KIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      +|+|+|+.+||||..|+.|+...+
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~   24 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAP   24 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCS
T ss_pred             CEEEECCCCccHHHHHHHHHhcCC
Confidence            478999999999999999986554

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.32  E-value=0.052  Score=43.17  Aligned_cols=25  Identities=20%  Similarity=0.209  Sum_probs=20.1

Q ss_pred             CeEEEEE-cCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMIS-GAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~-G~pGSGKSTla~~La~~l  108 (303)
                      |++|.|+ |.-|+||||++..||..+
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHH
Confidence            3456666 899999999999888766

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.73  E-value=0.056  Score=45.25  Aligned_cols=28  Identities=18%  Similarity=0.178  Sum_probs=24.1

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      --++.+++|.|++|+|||+++..+++..
T Consensus        40 igrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          40 IGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             CBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             ccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            3466799999999999999999998744

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=91.66  E-value=0.0097  Score=46.07  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +.+|+|+.||||||+...|.--+
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999997655

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.44  E-value=0.061  Score=45.09  Aligned_cols=23  Identities=39%  Similarity=0.453  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~  106 (303)
                      .|.|+|.|.|.+||||+-+.|..
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHC
Confidence            36899999999999999999975

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.33  E-value=0.062  Score=44.50  Aligned_cols=26  Identities=23%  Similarity=0.125  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.++-|.|++||||||+|-.++...
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEecCCccchHHHHHHHHHHH
Confidence            44589999999999999998887754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=91.26  E-value=0.065  Score=44.46  Aligned_cols=22  Identities=32%  Similarity=0.447  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +.|+|.|.|.+||||+-+.|..
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHC
Confidence            6899999999999999999975

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.23  E-value=0.041  Score=39.72  Aligned_cols=20  Identities=15%  Similarity=0.293  Sum_probs=16.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQC  101 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla  101 (303)
                      .+...++|.+++|||||.++
T Consensus         5 ~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTH
T ss_pred             HcCCcEEEEcCCCCChhHHH
Confidence            34567889999999999766

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=91.20  E-value=0.07  Score=41.94  Aligned_cols=23  Identities=22%  Similarity=0.211  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ..|+|.|-..+|||||+.+|...
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHH
Confidence            56999999999999999998653

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.11  E-value=0.083  Score=43.78  Aligned_cols=33  Identities=18%  Similarity=0.173  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh---CCc--eeehH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY---GLV--HIAAG  116 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l---g~~--~i~~d  116 (303)
                      |.+|+|.|.=|+||||++-.|+..|   |..  .|+.|
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~D   39 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD   39 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            4578899999999999887776655   553  45554

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=90.99  E-value=0.066  Score=46.99  Aligned_cols=23  Identities=17%  Similarity=0.343  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .-++|.|++|||||+..+.|...
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            35889999999999988766543

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.88  E-value=0.087  Score=43.61  Aligned_cols=26  Identities=27%  Similarity=0.134  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      .+.++.|.|++|+||||+|-.++...
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHHH
Confidence            34588999999999999998887654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.76  E-value=0.087  Score=42.63  Aligned_cols=23  Identities=22%  Similarity=0.232  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .+++|+||.++||||+.+.++-.
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHHH
Confidence            57899999999999999988653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.75  E-value=0.09  Score=43.66  Aligned_cols=26  Identities=31%  Similarity=0.179  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      ..|+|.|..|+|||||+..|...-|.
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            36999999999999999999766553

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=90.70  E-value=0.095  Score=42.02  Aligned_cols=28  Identities=21%  Similarity=0.291  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           83 EPLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      ..++|++.|-..+||||++.+|....|.
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            3467999999999999999999877664

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=90.50  E-value=0.097  Score=43.26  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           86 KIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      .|+|.|..|+||||++..|.-.-|
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Confidence            689999999999999999965444

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.33  E-value=0.018  Score=32.03  Aligned_cols=26  Identities=27%  Similarity=0.631  Sum_probs=21.7

Q ss_pred             CCCCCCCCceecccCCCCCchHHHhh
Q 022042          208 RRLDPVTGKIYHVKYSPPETDEIAAR  233 (303)
Q Consensus       208 R~~~~~~g~~~~~~~~~p~~~~i~~r  233 (303)
                      |+.++.+|+.||+.|+||..+++++.
T Consensus         2 Rr~C~~CG~~Yh~~~~pPk~~g~CD~   27 (35)
T d1zina2           2 RRICRNCGATYHLIFHPPAKPGVCDK   27 (35)
T ss_dssp             EEEETTTCCEEETTTBCCSSTTBCTT
T ss_pred             ccCCcCcCchhccccCCCCCCCcCCC
Confidence            45678899999999999998887653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.16  E-value=0.068  Score=44.44  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           86 KIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      +-+|+|+.||||||+.++|.=-+|
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhC
Confidence            668999999999999998854343

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.81  E-value=0.081  Score=44.59  Aligned_cols=22  Identities=27%  Similarity=0.364  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      |.|+|.|.|.+||||+-+.|..
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC
T ss_pred             CcEeEECCCCCCHHHHHHHHHC
Confidence            4689999999999999999954

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.76  E-value=0.16  Score=37.24  Aligned_cols=25  Identities=24%  Similarity=0.182  Sum_probs=19.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +.+-+|+||+.|||||-.-+.+..+
T Consensus         2 G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           2 GQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEecccCHHHHHHHHHHHHH
Confidence            3466789999999999766655555

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=89.71  E-value=0.091  Score=43.43  Aligned_cols=26  Identities=27%  Similarity=0.465  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           82 VEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        82 ~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      ..+..|+|.|.|.+||||+...|..+
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEEecCccchhhhhhhhhcc
Confidence            45678999999999999999999754

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.61  E-value=0.1  Score=41.91  Aligned_cols=21  Identities=24%  Similarity=0.308  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~  106 (303)
                      +++|+||..+||||+.+.++-
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHH
Confidence            788999999999999987765

>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus globisporus [TaxId: 1459]

Probab=89.60  E-value=0.023  Score=31.55  Aligned_cols=26  Identities=31%  Similarity=0.709  Sum_probs=21.6

Q ss_pred             CCCCCCCCceecccCCCCCchHHHhh
Q 022042          208 RRLDPVTGKIYHVKYSPPETDEIAAR  233 (303)
Q Consensus       208 R~~~~~~g~~~~~~~~~p~~~~i~~r  233 (303)
                      |+.++.+|+.||..|+||..+++++.
T Consensus         2 R~~C~~CG~~Yh~~~~pPk~~g~CD~   27 (35)
T d1s3ga2           2 RRICKVCGTSYHLLFNPPQVEGKCDK   27 (35)
T ss_dssp             EEEETTTCCEEETTTBCCSBTTBCTT
T ss_pred             ccCCcCcCchhccccCCCCCCCccCC
Confidence            45678899999999999998877653

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=89.46  E-value=0.11  Score=40.48  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..|+|.|-..+|||||..+|..
T Consensus         6 inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEEeccCCcHHHHHHHHHh
Confidence            4689999999999999999953

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.71  E-value=0.15  Score=42.27  Aligned_cols=27  Identities=19%  Similarity=0.096  Sum_probs=23.3

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      --+..+++|.|++|+|||+++..++..
T Consensus        65 igkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          65 YAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            345678999999999999999999765

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.61  E-value=0.2  Score=39.59  Aligned_cols=24  Identities=25%  Similarity=0.206  Sum_probs=19.8

Q ss_pred             eEEEEE-cCCCCCHHHHHHHHHHHh
Q 022042           85 LKIMIS-GAPASGKGTQCELIKEKY  108 (303)
Q Consensus        85 ~~I~I~-G~pGSGKSTla~~La~~l  108 (303)
                      ++|.|. +.-|+||||++-.|+..+
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~l   27 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVAL   27 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHH
Confidence            466666 789999999999988776

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=88.56  E-value=0.17  Score=39.64  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..|+|.|-..+|||||+.+|..
T Consensus         9 ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           9 VNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHS
T ss_pred             eEEEEEEccCCcHHHHHHHHHh
Confidence            5799999999999999999953

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=87.97  E-value=0.14  Score=42.66  Aligned_cols=30  Identities=30%  Similarity=0.418  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAG  116 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d  116 (303)
                      .+.|+|+|-.+|||||+.+.|.   |..++..+
T Consensus        24 lP~ivVvG~~ssGKSSliNaLl---G~~~lP~~   53 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIV---GRDFLPRG   53 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHH---TSCCCCC-
T ss_pred             CCeEEEEeCCCCCHHHHHHHHh---CCCCCCCC
Confidence            3578899999999999999994   55544433

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.83  E-value=0.27  Score=36.32  Aligned_cols=25  Identities=20%  Similarity=0.058  Sum_probs=19.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +.+=+|+||+.|||||-.-+.+.+|
T Consensus         7 G~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           7 GWVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eeEEEEEeccccHHHHHHHHHHHHh
Confidence            3566789999999999876666665

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=87.67  E-value=0.17  Score=47.75  Aligned_cols=29  Identities=17%  Similarity=0.272  Sum_probs=25.3

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...+...|+|.|-+|||||+-++.+.+.+
T Consensus        87 ~~~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          87 QDREDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             HHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34567899999999999999999998876

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.55  E-value=0.22  Score=40.24  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      ..|+|.|-..+||||++.+|.-..|.
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~   32 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGG   32 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            58999999999999999999877764

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.53  E-value=0.19  Score=38.75  Aligned_cols=21  Identities=24%  Similarity=0.222  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 022042           86 KIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~  106 (303)
                      ..+|.+|.|+|||.++-.++.
T Consensus        25 n~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHHHHHH
Confidence            356889999999987776654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.53  E-value=0.2  Score=43.19  Aligned_cols=24  Identities=29%  Similarity=0.293  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 022042           86 KIMISGAPASGKGTQCELIKEKYG  109 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg  109 (303)
                      +-+|+|+.||||||+...|+=-||
T Consensus        27 l~~i~G~NGsGKS~ileAi~~~lg   50 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAISFVLG   50 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            567999999999999999964344

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=87.25  E-value=0.18  Score=47.21  Aligned_cols=28  Identities=25%  Similarity=0.326  Sum_probs=24.8

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+...|+|.|-+|||||+-++.+.+.+
T Consensus        83 ~~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          83 SQENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             HCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4567799999999999999999998876

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.10  E-value=0.16  Score=42.14  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      -+|.|+|+.++||||+...|...
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC
Confidence            48999999999999999998653

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.86  E-value=0.24  Score=39.41  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      ..|+|.|-.++|||||+..|.-..|.
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~g~   29 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDRGF   29 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHBC
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCC
Confidence            47999999999999999999766664

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=86.54  E-value=0.21  Score=46.99  Aligned_cols=28  Identities=14%  Similarity=0.305  Sum_probs=24.7

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+...|+|.|-+|||||+-++.+.+.+
T Consensus       122 ~~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         122 DRQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999998866

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.38  E-value=0.18  Score=43.13  Aligned_cols=26  Identities=15%  Similarity=0.288  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           85 LKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      ..|+|.|..++||||++..|....|.
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll~~~g~   43 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLVQRAGI   43 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHBC
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHCCC
Confidence            46999999999999999999876664

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=86.19  E-value=0.21  Score=47.61  Aligned_cols=29  Identities=21%  Similarity=0.396  Sum_probs=25.0

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...+...|+|+|-+|||||+-++.+.+.+
T Consensus       119 ~~~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         119 TDRENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             HHTCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34567889999999999999999888776

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=85.91  E-value=0.24  Score=46.82  Aligned_cols=29  Identities=17%  Similarity=0.320  Sum_probs=25.2

Q ss_pred             ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           80 ATVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ...++..|+|+|-+|||||+-++.+.+.+
T Consensus        90 ~~~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          90 RDERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             HHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HhCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34567899999999999999999998876

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.50  E-value=0.35  Score=37.75  Aligned_cols=26  Identities=15%  Similarity=-0.001  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042           86 KIMISGAPASGKGTQCELIKEKYGLV  111 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~lg~~  111 (303)
                      ..+|.+++|+|||.++-.++.+++..
T Consensus        87 ~~ll~~~tG~GKT~~a~~~~~~~~~~  112 (206)
T d2fz4a1          87 RGCIVLPTGSGKTHVAMAAINELSTP  112 (206)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHSCSC
T ss_pred             CcEEEeCCCCCceehHHhHHHHhcCc
Confidence            45678899999999998898888643

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=85.26  E-value=0.4  Score=35.19  Aligned_cols=23  Identities=17%  Similarity=0.130  Sum_probs=16.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 022042           86 KIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        86 ~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      +=+|+||+.|||||-.-+.+.++
T Consensus         4 L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           4 IEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEEccccCHHHHHHHHHHHHH
Confidence            45689999999999544444444

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=84.83  E-value=0.25  Score=40.05  Aligned_cols=27  Identities=26%  Similarity=0.246  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042           84 PLKIMISGAPASGKGTQCELIKEKYGL  110 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~~La~~lg~  110 (303)
                      ...|+|.|-..+|||||+.+|.-..|.
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll~~~g~   50 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNILFLTGM   50 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTS
T ss_pred             ceEEEEEeeCCCCHHHHHHHHHHHcCC
Confidence            346999999999999999999776664

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=84.71  E-value=0.27  Score=46.86  Aligned_cols=28  Identities=18%  Similarity=0.238  Sum_probs=24.6

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKY  108 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~l  108 (303)
                      ..+...|+|+|-+|||||.-++.+.+.+
T Consensus       118 ~~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         118 DRENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             HTSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999998876

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.35  E-value=0.27  Score=40.59  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCELIKE  106 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~La~  106 (303)
                      +.|+|+|--.|||||+.+.|..
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CeEEEEcCCCCCHHHHHHHHhC
Confidence            3688999999999999999953

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=83.98  E-value=0.29  Score=41.08  Aligned_cols=19  Identities=21%  Similarity=0.162  Sum_probs=15.9

Q ss_pred             CeEEEEEcCCCCCHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCE  102 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~  102 (303)
                      .-+-++.|.+|+|||||+.
T Consensus        14 ~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          14 GDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             SCEEEEECSTTSSHHHHHC
T ss_pred             CCEEEEEccCCCCccccee
Confidence            3466799999999999874

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.93  E-value=0.28  Score=41.30  Aligned_cols=20  Identities=20%  Similarity=0.187  Sum_probs=16.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHH
Q 022042           83 EPLKIMISGAPASGKGTQCE  102 (303)
Q Consensus        83 ~~~~I~I~G~pGSGKSTla~  102 (303)
                      ..-+-++.|.+|+|||||+.
T Consensus        13 ~gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHHC
T ss_pred             CCCEEEEEccCCCCccccee
Confidence            34466799999999999984

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=83.89  E-value=0.41  Score=38.45  Aligned_cols=30  Identities=10%  Similarity=0.000  Sum_probs=24.6

Q ss_pred             hcccCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           78 ASATVEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        78 ~~~~~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      .....+++..+|.|..|||||-++-..+..
T Consensus        70 ~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~   99 (233)
T d2eyqa3          70 DMCQPLAMDRLVCGDVGFGKTEVAMRAAFL   99 (233)
T ss_dssp             HHHSSSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred             HHhccCccCeEEEcCCCCCcHHHHHHHHHH
Confidence            345667889999999999999998777654

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.74  E-value=0.17  Score=39.35  Aligned_cols=19  Identities=21%  Similarity=0.375  Sum_probs=15.5

Q ss_pred             eEEEEEcCCCCCHHHHHHH
Q 022042           85 LKIMISGAPASGKGTQCEL  103 (303)
Q Consensus        85 ~~I~I~G~pGSGKSTla~~  103 (303)
                      ..++|.+|+|||||+++..
T Consensus        41 ~~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             SCEEEECSSHHHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHHHH
Confidence            3577999999999988643

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=81.99  E-value=0.3  Score=41.12  Aligned_cols=19  Identities=21%  Similarity=0.162  Sum_probs=16.0

Q ss_pred             CeEEEEEcCCCCCHHHHHH
Q 022042           84 PLKIMISGAPASGKGTQCE  102 (303)
Q Consensus        84 ~~~I~I~G~pGSGKSTla~  102 (303)
                      .-+-++.|.+|+|||||+.
T Consensus        14 ~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          14 GDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CCEEEEEECTTSCHHHHTC
T ss_pred             CCEEEEEccCCCCcccccc
Confidence            3467899999999999875

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.25  E-value=0.44  Score=39.45  Aligned_cols=27  Identities=15%  Similarity=0.033  Sum_probs=22.1

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEK  107 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~  107 (303)
                      --+..+++|.|++|+|||+++..++..
T Consensus        65 ig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          65 IGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCCEEEeecCCCCChHHHHHHHHHh
Confidence            345678999999999999998877643

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=80.11  E-value=0.92  Score=30.79  Aligned_cols=32  Identities=16%  Similarity=0.139  Sum_probs=26.3

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042           81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHI  113 (303)
Q Consensus        81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i  113 (303)
                      ..+.+.|.|.|.-|+|-|.+|+.|.+ .|+.+-
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~-~G~~Vs   36 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLN-EGYQIS   36 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHH-HTCEEE
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHh-CCCEEE
Confidence            34567899999999999999999976 577554