Citrus Sinensis ID: 022052

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
Protein Sequence
MDPREPPPQLHQHQHQHQQPNIMMGPTSYHTNAMMPPNAAAGAAARFSFNPLSSSQSQSQSQSESQSQLQPKQPLDSLPHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPRKYTPDGNIALRLATTAQSPGSLADSGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEKWWVECVPGRVRWPSFGWFSCRNAHGSFSSAGNCGQFYCGGEKVELKFFEIWAFFSTNAPYVKLRCTYDHI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHcccEEEEEcccccEEEEEEcccccccccEEEccEEEEEcccEEEcccccccccccccEEEEEEccccEEEEEEcEEEEEEEEEHHHHcccccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEEccEEEEEEEEcccccccEEEEEEEEEEEEccccccccccccccccccEEEEEEcccccEEEccEEEccccEEEEEEEEccccEEEEEEccccc
Coil and Loop (DISEMBL)
mdprepppqlhqhqhqhqqpnimmgptsyhtnammppnaaagaaarfsfnplsssqsqsqsqsesqsqlqpkqpldslphggvfdgspslrtgggsfsidpakkkrgrprkytpdgniALRLAttaqspgsladsggggggaagsasepsakrhrgrppgsgkkqldalggvggvgftpHVITVKAGEDISSKIFAfsqqgprtVCILSASGaicnvtlrqptmsggtvtYEKWWVecvpgrvrwpsfgwfscrnahgsfssagncgqfycggekvELKFFEIWAFfstnapyvklrctydhi
Flexible Loop (DISEMBL)
MDPREPPPQLHQHQHQHQQPNIMMGPTSYHTNAMMPPNAAAGAAARFSFNPLSSSQSQSQSQSESQSQLQPKQPLDSLPHGGVFDgspslrtgggsfsidpakkkrgrprkytpdgNIALRLATTAQSPGSLADSGGGGGGAagsasepsakrhrgrppgsgKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEKWWVECVPGRVRWPSFGWFSCRNAHGSFSSAGNCGQFYCGGEKVELKFFEIWAFfstnapyvkLRCTYDHI
Low Complexity Region (SEG)
MDPREpppqlhqhqhqhqqpNIMMGPTSYHTnammppnaaagaaaRFSFNplsssqsqsqsqsesqsqlqpkqpldslpHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPRKYTPDGNIALRLATTAQspgsladsggggggaagsasepsaKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEKWWVECVPGRVRWPSFGWFSCRNAHGSFSSAGNCGQFYCGGEKVELKFFEIWAFFSTNAPYVKLRCTYDHI
Disordered region (IsUnstruct)
***********************************************************************************************************************************************************************ALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEKWWVECVPGRVRWPSFGWFSCRNAHGSFSSAGNCGQFYCGGEKVELKFFEIWAFFSTNAPYVKLRCTY***
Disordered Region (DISOPRED)
***************************************************************************************************************YT**********************************************************VGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEKWWVECVPGRVR**************SFSSAGNCGQFYCGGEKVELKFFEIWAFFSTNAPYVKLRCT****
Disordered Region (DISEMBL)
*******************PNIMMGPTSYHTNAMMPPNAAAGAAARFSFN************************LDSLPHGGVFDGSPSLRTGGGSFSIDP*********KYTPDGNIALRLATTA************************************KKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEKWWVECVPGRVRWPSFGWFSCRNAHGSFSSAGNCGQFYCGGEKVELKFFEIWAFFSTNAPYVKLRCTYDHI
Disordered Region (DISPRO)
*******************PNI**********************A*F*******************************************************************DGNIALRLAT********************************************LGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEKWWVECVPGRVRWP***WFSCRNAHGSFSSAGNCGQFYCGGEKVELKFFEIWAFFSTNAPYVKLRCTYDHI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPREPPPQLHQHQHQHQQPNIMMGPTSYHTNAMMPPNAAAGAAARFSFNPLSSSQSQSQSQSESQSQLQPKQPLDSLPHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPRKYTPDGNIALRLATTAQSPGSLADSGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEKWWVECVPGRVRWPSFGWFSCRNAHGSFSSAGNCGQFYCGGEKVELKFFEIWAFFSTNAPYVKLRCTYDHI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	303	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.260	0.254	0.345	0.0002

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 145 SASEPSAKRHRGRPPGSGKKQLDALGGVGGV--GFTPHVITVKAGEDISSKIFAFSQQGP 202
           ++S    KR RGRPPGS  K    +            HV+ V  G DI   +  ++++  
Sbjct: 79  TSSSAPGKRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRG 138

Query: 203 RTVCILSASGAICNVTLRQPT 223
           R V +L  +G + NVTLRQP 
Sbjct: 139 RGVSVLGGNGTVSNVTLRQPV 159

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
224126489	375	predicted protein [Populus trichocarpa]	0.792	0.64	0.519	1e-57
255557601	376	DNA binding protein, putative [Ricinus c	0.772	0.622	0.537	1e-53
225427270	353	PREDICTED: uncharacterized protein LOC10	0.735	0.631	0.530	7e-53
224138096	286	predicted protein [Populus trichocarpa]	0.584	0.618	0.644	6e-52
449462009	362	PREDICTED: uncharacterized protein LOC10	0.689	0.577	0.505	6e-49
356512006	288	PREDICTED: putative DNA-binding protein	0.564	0.593	0.609	2e-39
357513671	247	hypothetical protein MTR_8g017860, parti	0.627	0.769	0.487	2e-39
297794575	391	hypothetical protein ARALYDRAFT_494313 [	0.841	0.652	0.458	3e-39
448872670	362	putative AT-hook DNA-binding protein [El	0.574	0.480	0.552	1e-38
297800288	404	hypothetical protein ARALYDRAFT_914905 [	0.597	0.448	0.502	5e-37

>gi|224126489|ref|XP_002329567.1| predicted protein [Populus trichocarpa] gi|222870276|gb|EEF07407.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/281 (51%), Positives = 175/281 (62%), Gaps = 41/281 (14%)

Query: 6   PPPQLHQHQHQHQQPNIMMGPTSYHTNA---------MMPPNAAAGAAARFSFNPLSSSQ 56
           PPPQL        QP++++ PTS + +          + P NAA G    F FN +S ++
Sbjct: 22  PPPQLQS------QPSMILVPTSSYPSTTSHLINNPNISPQNAALGGG--FPFNTMSGNR 73

Query: 57  SQSQSQSESQSQLQPKQPLDSLPHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPRKYTPDG 116
            QS+ +                   G FDGS    + G  FSI+PAKKKRGRPRKYTPDG
Sbjct: 74  LQSKPE-------------------GAFDGSSPTSSSGMRFSIEPAKKKRGRPRKYTPDG 114

Query: 117 NIALRLATTAQSPG---SLADSGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALGGVG 173
           NIAL L+ T    G     ADSGGGG     +ASE  +K++RGRPPGSGKKQLDALGGVG
Sbjct: 115 NIALGLSPTPVPSGISAGHADSGGGGV-THDAASEHPSKKNRGRPPGSGKKQLDALGGVG 173

Query: 174 GVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYE- 232
           GVGFTPHVITVKAGEDI+SKI AFSQQGPRTVCILSA+GAICNVTLRQP MSGG+VTYE 
Sbjct: 174 GVGFTPHVITVKAGEDIASKIMAFSQQGPRTVCILSANGAICNVTLRQPAMSGGSVTYEG 233

Query: 233 KWWVECVPGRVRWPSFGWFSCRNAHGSFSSAGNCGQFYCGG 273
           ++ +  + G            R+   S S AG+ G+   GG
Sbjct: 234 RFEIISLSGSFLLSESNGSRSRSGGLSVSLAGSDGRVLGGG 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557601|ref|XP_002519830.1| DNA binding protein, putative [Ricinus communis] gi|223540876|gb|EEF42434.1| DNA binding protein, putative [Ricinus communis]

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 144/268 (53%), Positives = 168/268 (62%), Gaps = 34/268 (12%)

Query: 21  NIMMGPTSYHTNA-----MMPPNAAAGAAARFSFNPLSSSQSQSQSQSESQSQLQPKQPL 75
           N+M+G   Y  NA     M+ PN        F FN +   ++Q   Q  S          
Sbjct: 26  NMMLG--GYSNNAHPAMTMINPNIPPSG---FPFNSVGPPRTQPSKQPSSD--------- 71

Query: 76  DSLPHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPRKYTPDGNIALRLATTAQS------P 129
                GG+FDGS    + G  FS+DPAKKKRGRPRKYTPDGNIAL L+ T  S      P
Sbjct: 72  -----GGLFDGSSPPSSSGMRFSMDPAKKKRGRPRKYTPDGNIALGLSPTPISSSATSLP 126

Query: 130 GSLADSGGGGGGAAGS---ASEPSAKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKA 186
             +ADSG G G   G+   AS+P +KR+RGRPPGSGKKQLDALGGVGGVGFTPHVITVKA
Sbjct: 127 PHVADSGSGVGVGIGTPAIASDPPSKRNRGRPPGSGKKQLDALGGVGGVGFTPHVITVKA 186

Query: 187 GEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYE-KWWVECVPGRVRW 245
           GEDI+SKI AFSQQGPRTVCILSA+GAICNVTLRQP MSGGTVTYE ++ +  + G    
Sbjct: 187 GEDIASKIMAFSQQGPRTVCILSANGAICNVTLRQPAMSGGTVTYEGRYEIISLSGSFLL 246

Query: 246 PSFGWFSCRNAHGSFSSAGNCGQFYCGG 273
                   R+   S S AG+ G+   GG
Sbjct: 247 SENNGNRSRSGGLSVSLAGSDGRVLGGG 274

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427270|ref|XP_002281340.1| PREDICTED: uncharacterized protein LOC100245362 [Vitis vinifera] gi|297742130|emb|CBI33917.3| unnamed protein product [Vitis vinifera]

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 138/260 (53%), Positives = 162/260 (62%), Gaps = 37/260 (14%)

Query: 22  IMMGPTSYHTNA-----MMPPNAAAGAAA-RFSFNPLSSSQSQSQSQSESQSQLQPKQPL 75
           +MMGP SYHTN      MM PN+AA     RFSF  + +S+                 P+
Sbjct: 19  MMMGPNSYHTNMANTSPMMNPNSAAIMQNNRFSFTSMVASK-----------------PV 61

Query: 76  DSLPHGGVFDGSPS-LRTGGGSFSIDPAKKKRGRPRKYTPDGNIALRLATTAQSPGSLAD 134
           DS P+G   DGS + LR  G  F+I+PAKKKRGRPRKY PDGNIAL LA     P  +  
Sbjct: 62  DS-PYG---DGSSTGLRPCG--FNIEPAKKKRGRPRKYAPDGNIALGLA-----PTPIPS 110

Query: 135 SGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKI 194
           +   G      +SEP AKR+RGRPPGSGKKQLDALG  G VGFTPHVITV  GEDI+SKI
Sbjct: 111 TAAHGDATGTPSSEPPAKRNRGRPPGSGKKQLDALGAAG-VGFTPHVITVNVGEDIASKI 169

Query: 195 FAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYE-KWWVECVPGRVRWPSFGWFSC 253
            AFSQQGPRTVCILSA+GAICNVTLRQP MSGGT++YE ++ +  + G            
Sbjct: 170 MAFSQQGPRTVCILSANGAICNVTLRQPAMSGGTISYEGRFDIISLSGSFLLSEDNGSRH 229

Query: 254 RNAHGSFSSAGNCGQFYCGG 273
           R    S S AG+ G+   GG
Sbjct: 230 RTGGLSVSLAGSDGRVLGGG 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138096|ref|XP_002326517.1| predicted protein [Populus trichocarpa] gi|222833839|gb|EEE72316.1| predicted protein [Populus trichocarpa]

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 118/183 (64%), Positives = 131/183 (71%), Gaps = 6/183 (3%)

Query: 97  FSIDPAKKKRGRPRKYTPDGNIALRLATT----AQSPGSLADSGGGGGGAA-GSASEPSA 151
           FSI+PAKKKRGRPRKYTPDGNIAL L+ T      S G    SGG G G     ASE  +
Sbjct: 3   FSIEPAKKKRGRPRKYTPDGNIALGLSPTPIHSGMSAGQADSSGGAGSGVMPDVASEHPS 62

Query: 152 KRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSAS 211
           K+HRGRPPGSGKKQLDALGG GGVGFTPHVITVKAGEDI+SKI AFSQQGPRTVCILSA+
Sbjct: 63  KKHRGRPPGSGKKQLDALGGTGGVGFTPHVITVKAGEDIASKIMAFSQQGPRTVCILSAN 122

Query: 212 GAICNVTLRQPTMSGGTVTYE-KWWVECVPGRVRWPSFGWFSCRNAHGSFSSAGNCGQFY 270
           GAICNVTLRQP MSGG+VTYE ++ +  + G            R    S S AG+ G+  
Sbjct: 123 GAICNVTLRQPAMSGGSVTYEGRFEIISLSGSFLLSESNGSRSRTGGLSVSLAGSDGRVL 182

Query: 271 CGG 273
            GG
Sbjct: 183 GGG 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462009|ref|XP_004148734.1| PREDICTED: uncharacterized protein LOC101204243 [Cucumis sativus] gi|449511145|ref|XP_004163876.1| PREDICTED: uncharacterized LOC101204243 [Cucumis sativus]

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 127/251 (50%), Positives = 160/251 (63%), Gaps = 42/251 (16%)

Query: 1   MDPREPP-PQLHQHQHQHQQPNIMM---------GPTSYHTNAMMPPNAAAG----AAAR 46
           MD RE   P +HQH  Q   PN M+          P S +T+ ++ PN+AA     +A+R
Sbjct: 1   MDSRERSMPSVHQHHQQSTPPNRMIPNNASYSANMPNSNNTSPLINPNSAAAQMMSSASR 60

Query: 47  FSFNPLSSSQSQSQSQSESQSQLQPKQPLDSLPHGGVFDGSPS-LRTGGGSFSIDPAKKK 105
           F FN +  S S+    SES             P+   +DGS S LRTGG  F+ID  KKK
Sbjct: 61  FPFNSMMGSSSK---PSES-------------PNAASYDGSQSELRTGG--FNIDSGKKK 102

Query: 106 RGRPRKYTPDGNIALRLATTAQSPGSL-ADSGGGGGGAAGSASEPSAKRHRGRPPGSGKK 164
           RGRPRKY+PDGNIAL L+ T  +  ++ ADS G        + +P  K++RGRPPG+GK+
Sbjct: 103 RGRPRKYSPDGNIALGLSPTPITSSAVPADSAGM------HSPDPRPKKNRGRPPGTGKR 156

Query: 165 QLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTM 224
           Q+DALG  GGVGFTPHVI VK GEDI+SK+ AFSQQGPRTVCILSA GA+CNVTL QP +
Sbjct: 157 QMDALG-TGGVGFTPHVILVKPGEDIASKVMAFSQQGPRTVCILSAHGAVCNVTL-QPAL 214

Query: 225 SGGTVTYEKWW 235
           S G+V+YE  +
Sbjct: 215 SSGSVSYEGRY 225

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512006|ref|XP_003524712.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/174 (60%), Positives = 127/174 (72%), Gaps = 3/174 (1%)

Query: 102 AKKKRGRPRKYTPDGNIALRLATTAQSPGSLADSGGGGGGAAGSAS-EPSAKRHRGRPPG 160
           AKKKRGRPRKY+PDGNIALRLA T  SP + A  GGGGG +AG AS +  AK+HRGRPPG
Sbjct: 7   AKKKRGRPRKYSPDGNIALRLAPTHASPPAAASGGGGGGDSAGMASADAPAKKHRGRPPG 66

Query: 161 SGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLR 220
           SGKKQLDAL G GGVGFTPHVI V++GEDI++KI AFSQQGPRTVCILSA GAI NVTL+
Sbjct: 67  SGKKQLDAL-GAGGVGFTPHVILVESGEDITAKIMAFSQQGPRTVCILSAIGAIGNVTLQ 125

Query: 221 QPTMSGGTVTYE-KWWVECVPGRVRWPSFGWFSCRNAHGSFSSAGNCGQFYCGG 273
           Q  M+GG  TYE ++ +  + G ++         R    + + AG+ G+   GG
Sbjct: 126 QSAMTGGIATYEGRFEIISLSGSLQQSENNSERSRTCTLNVTLAGSDGRVLGGG 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513671|ref|XP_003627124.1| hypothetical protein MTR_8g017860, partial [Medicago truncatula] gi|355521146|gb|AET01600.1| hypothetical protein MTR_8g017860, partial [Medicago truncatula]

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/246 (48%), Positives = 139/246 (56%), Gaps = 56/246 (22%)

Query: 1   MDPREPPPQLHQHQHQHQQPNIMMGPTSYH-TNA-MMPPNAA--------AGAAARFSFN 50
           MD R  PPQ         QP +M+GPTSY  TN  M+ PN++        A A ARF   
Sbjct: 1   MDSRSAPPQ---------QPTMMVGPTSYAPTNTTMISPNSSTTTTANIMAPATARF--- 48

Query: 51  PLSSSQSQSQSQSESQSQLQPKQPLDSLPHGGVFDGSPSLRTGGGSFSIDPAKKKRGRPR 110
           P +S QS+                    P     DG  S  T G        KKKRGRPR
Sbjct: 49  PFASPQSE--------------------PFSVTHDGPSSPSTLG--------KKKRGRPR 80

Query: 111 KYTPDGNIALRLATTAQSPGSLADSGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALG 170
           KY+PDGNIAL LA  + SP  +A +     G +G+A  P  K+HRGRPPGSGKKQLDALG
Sbjct: 81  KYSPDGNIALGLAPVS-SP--VAATSAASAGDSGNADAP-PKKHRGRPPGSGKKQLDALG 136

Query: 171 GVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVT 230
             GG GFTPHVI V++GEDI+ K+ AFSQ GPRTVCILSA GAI +V LRQP  SG    
Sbjct: 137 A-GGTGFTPHVILVESGEDITEKVMAFSQTGPRTVCILSAIGAISSVILRQPA-SGSIAR 194

Query: 231 YEKWWV 236
           YE   V
Sbjct: 195 YEVQLV 200

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794575|ref|XP_002865172.1| hypothetical protein ARALYDRAFT_494313 [Arabidopsis lyrata subsp. lyrata] gi|297311007|gb|EFH41431.1| hypothetical protein ARALYDRAFT_494313 [Arabidopsis lyrata subsp. lyrata]

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 138/301 (45%), Positives = 175/301 (58%), Gaps = 46/301 (15%)

Query: 1   MDPREPPPQLHQHQHQHQQPNIMMGPTSYHTNAMMPPNAAAGAAARFSFNPLSSSQS--- 57
           MD R+ PP     Q+Q Q P  M+   S++ N    PNAAA A       P S+SQS   
Sbjct: 1   MDSRDIPPS----QNQLQPPPGML--MSHYRN----PNAAAAAL----MVPTSTSQSIQH 46

Query: 58  ----------QSQSQSESQSQLQPKQPLDSLPHGGVFDGSPS---LRTGGGSFSIDP--- 101
                     Q QSQ+  Q Q   ++ L+SL   G  DGSPS   +R G    + +    
Sbjct: 47  HHRLPFSNQQQQQSQTFHQQQQMDQKTLESL---GFGDGSPSSQPMRFGIEDQNQNQQLQ 103

Query: 102 AKKKRGRPRKYTPDGNIALRLATTAQSPGSLADS---------GGGGGGAAGSASEPSAK 152
            KKKRGRPRKYTPDG+IAL LA T+    + ++S           GGGG  G++++P AK
Sbjct: 104 VKKKRGRPRKYTPDGSIALGLAPTSPLLSAASNSYGGGDGGVGDSGGGGGNGNSADPPAK 163

Query: 153 RHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASG 212
           R+RGRPPGS KKQLDALGG  GVGFTPHVI VK GEDI+SK+ AFS+QGPRT+CILSASG
Sbjct: 164 RNRGRPPGSSKKQLDALGGTAGVGFTPHVIEVKTGEDIASKVMAFSEQGPRTICILSASG 223

Query: 213 AICNVTLRQPTMSGGTVTYE-KWWVECVPGRVRWPSFGWFSCRNAHGSFSSAGNCGQFYC 271
           A+  VTLRQ + S G VTYE ++ +  + G          + R+ + S S AG  G+   
Sbjct: 224 AVGRVTLRQASHSSGIVTYEGRFEIITLSGSFLNYEVNGSTNRSGNLSVSLAGPDGRIVG 283

Query: 272 G 272
           G
Sbjct: 284 G 284

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|448872670|gb|AGE46020.1| putative AT-hook DNA-binding protein [Elaeis guineensis]

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/181 (55%), Positives = 116/181 (64%), Gaps = 7/181 (3%)

Query: 100 DPAKKKRGRPRKYTPDGNIALRLATT----AQSPGS--LADSGGGGGGAAGSASEPSAKR 153
           +P K+KRGRPRKY PDG ++L L T     A SPGS   + S  G G  A SAS  + K+
Sbjct: 90  EPVKRKRGRPRKYGPDGTMSLALTTVSPTAAVSPGSGGFSPSSAGAGNPASSASAEAMKK 149

Query: 154 HRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGA 213
            RGRPPGSGKKQ  A  G  G+GFTPHVITVKAGED+SSKI +FSQ GPR VCILSA+GA
Sbjct: 150 ARGRPPGSGKKQQLAALGSAGIGFTPHVITVKAGEDVSSKIMSFSQHGPRAVCILSANGA 209

Query: 214 ICNVTLRQPTMSGGTVTYE-KWWVECVPGRVRWPSFGWFSCRNAHGSFSSAGNCGQFYCG 272
           I NVTLRQ   SGGTVTYE ++ +  + G       G    R    S S AG  G+   G
Sbjct: 210 ISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSESGGQRSRTGGLSVSLAGPDGRVLGG 269

Query: 273 G 273
           G
Sbjct: 270 G 270

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800288|ref|XP_002868028.1| hypothetical protein ARALYDRAFT_914905 [Arabidopsis lyrata subsp. lyrata] gi|297313864|gb|EFH44287.1| hypothetical protein ARALYDRAFT_914905 [Arabidopsis lyrata subsp. lyrata]

 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 105/209 (50%), Positives = 124/209 (59%), Gaps = 28/209 (13%)

Query: 84  FDGSPS-----LRTGGGSFSID--PAKKKRGRPRKYTPDG---NIALRLATTAQSPGS-- 131
           FDGSPS      +     F ID    KKKRGRPRKY  DG   NIAL LA T+  P +  
Sbjct: 70  FDGSPSSVAATTQQQSMRFGIDHQQVKKKRGRPRKYAADGGGSNIALGLAPTSPLPTASN 129

Query: 132 -------LADSGGGGGGAAGSASEPSAKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITV 184
                     +GG  GGA  ++S+P AKR+RGRPPGSGKKQLDALGG GGVGFTPHVI V
Sbjct: 130 SYGGGNEGGGTGGDSGGANANSSDPPAKRNRGRPPGSGKKQLDALGGTGGVGFTPHVIEV 189

Query: 185 KAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEKWWVECVPGRVR 244
           K GEDI++K+ AF+ QGPR +CILSA+GA+ NV LRQ T   G V YE        GR  
Sbjct: 190 KTGEDIATKVMAFTNQGPRAICILSATGAVTNVKLRQATNPSGIVKYE--------GRFE 241

Query: 245 WPSF-GWFSCRNAHGSFSSAGNCGQFYCG 272
             S  G F    ++G+ +  GN      G
Sbjct: 242 IISLSGSFLNSESNGTVTKTGNLSVSLAG 270

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
TAIR|locus:2178505	386	AT5G46640 [Arabidopsis thalian	0.633	0.497	0.475	1.2e-35
TAIR|locus:2141045	439	AT4G17950 [Arabidopsis thalian	0.541	0.373	0.471	1.3e-31
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.419	0.361	0.520	1.2e-28
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.386	0.336	0.474	5.2e-26
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.343	0.327	0.518	3e-24
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.320	0.231	0.5	4.9e-24
TAIR|locus:2098861	354	AT3G61310 [Arabidopsis thalian	0.432	0.370	0.434	1.1e-23
TAIR|locus:2167988	404	AT5G62260 [Arabidopsis thalian	0.330	0.247	0.445	1.6e-23
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.554	0.471	0.384	2.9e-23
TAIR|locus:2031321	378	AT1G63470 [Arabidopsis thalian	0.541	0.433	0.378	2.1e-22

TAIR|locus:2178505 AT5G46640 [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 98/206 (47%), Positives = 115/206 (55%)

Query:    82 GVFDGSPSLRTGGGSFSIDP------AKKKRGRPRKYTPDGNIALRLATTAQXXXXXXXX 135
             G  DGSPS +     F ID        KKKRGRPRKYTPDG+IAL LA T+         
Sbjct:    77 GFGDGSPSSQPM--RFGIDDQNQQLQVKKKRGRPRKYTPDGSIALGLAPTSPLLSAASNS 134

Query:   136 XXXXXXXXXXXXXXXX----KRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDIS 191
                                 KR+RGRPPGS KKQLDALGG  GVGFTPHVI V  GEDI+
Sbjct:   135 YGEGGVGDSGGNGNSVDPPVKRNRGRPPGSSKKQLDALGGTSGVGFTPHVIEVNTGEDIA 194

Query:   192 SKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYE-KWWVECVPGRVRWPSFGW 250
             SK+ AFS QG RT+CILSASGA+  V LRQ + S G VTYE ++ +  + G V       
Sbjct:   195 SKVMAFSDQGSRTICILSASGAVSRVMLRQASHSSGIVTYEGRFEIITLSGSVLNYEVNG 254

Query:   251 FSCRNAHGSFSSAGNCGQFYCGGEKV 276
              + R+ + S + AG  G    GG  V
Sbjct:   255 STNRSGNLSVALAGPDGGIV-GGSVV 279

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2141045 AT4G17950 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 90/191 (47%), Positives = 102/191 (53%)

Query:   103 KKKRGRPRKYTPDG--------NIALRLATTAQXXXXXXXXXXX--------XXXXXXXX 146
             KKKRGRPRKY  DG        NIAL LA T+                            
Sbjct:   131 KKKRGRPRKYAADGGGGGGGGSNIALGLAPTSPLPSASNSYGGGNEGGGGGDSAGANANS 190

Query:   147 XXXXXKRHRGRPPGSGKKQLDALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVC 206
                  KR+RGRPPGSGKKQLDALGG GGVGFTPHVI VK GEDI++KI AF+ QGPR +C
Sbjct:   191 SDPPAKRNRGRPPGSGKKQLDALGGTGGVGFTPHVIEVKTGEDIATKILAFTNQGPRAIC 250

Query:   207 ILSASGAICNVTLRQPTMSG--GTVTYEKWWVECVPGRVRWPSF-GWFSCRNAHGSFSSA 263
             ILSA+GA+ NV LRQ   S   GTV YE        GR    S  G F    ++G+ +  
Sbjct:   251 ILSATGAVTNVMLRQANNSNPTGTVKYE--------GRFEIISLSGSFLNSESNGTVTKT 302

Query:   264 GNCGQFYCGGE 274
             GN      G E
Sbjct:   303 GNLSVSLAGHE 313

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 75/144 (52%), Positives = 88/144 (61%)

Query:    92 TGGGSFSIDPAKKKRGRPRKYTPD-GNIALRLATTAQXXXXXXXXXXXXXXXXXXXXXXX 150
             TG GS   +P KK+RGRPRKY PD G ++L L   A                        
Sbjct:    89 TGTGS---EPVKKRRGRPRKYGPDSGEMSLGLNPGAPSFTVSQPSSGGDGG--------- 136

Query:   151 XKRHRGRPPGSGKKQL--DALGGVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCIL 208
              ++ RGRPPGS  K+L   ALG  G +GFTPHV+TV AGED+SSKI A +  GPR VC+L
Sbjct:   137 -EKKRGRPPGSSSKRLKLQALGSTG-IGFTPHVLTVLAGEDVSSKIMALTHNGPRAVCVL 194

Query:   209 SASGAICNVTLRQPTMSGGTVTYE 232
             SA+GAI NVTLRQ   SGGTVTYE
Sbjct:   195 SANGAISNVTLRQSATSGGTVTYE 218

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 65/137 (47%), Positives = 85/137 (62%)

Query:   101 PAKKKRGRPRKYTPDGNIALRLATTAQXXXXXXXXXXXXXXXXXXXXXXXXKRHRGRPPG 160
             P K+KRGRPRKY  DG+++L L++++                         KR RGRPPG
Sbjct:    96 PMKRKRGRPRKYGQDGSVSLALSSSS---------------VSTITPNNSNKRGRGRPPG 140

Query:   161 SGKKQ-LDALGGV----GGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAIC 215
             SGKKQ + ++G +     G+ FTPHVI V  GEDI+SK+ AFSQQGPR +C+LSASGA+ 
Sbjct:   141 SGKKQRMASVGELMPSSSGMSFTPHVIAVSIGEDIASKVIAFSQQGPRAICVLSASGAVS 200

Query:   216 NVTLRQPTMSGGTVTYE 232
               TL QP+ S G + YE
Sbjct:   201 TATLIQPSASPGAIKYE 217

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
 Identities = 56/108 (51%), Positives = 68/108 (62%)

Query:   170 GGVGG-VG--FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG 226
             GGVGG VG  FTPHVITV  GEDI+ +I +FSQQGPR +CILSA+G I NVTLRQP   G
Sbjct:   113 GGVGGGVGSNFTPHVITVNTGEDITMRIISFSQQGPRAICILSANGVISNVTLRQPDSCG 172

Query:   227 GTVTYE-KWWVECVPGRVRWPSFGWFSCRNAHGSFSSAGNCGQFYCGG 273
             GT+TYE ++ +  + G            R+   S S AG  G+   GG
Sbjct:   173 GTLTYEGRFEILSLSGSFMETENQGSKGRSGGMSVSLAGPDGRVVGGG 220

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
 Identities = 49/98 (50%), Positives = 60/98 (61%)

Query:   177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEKWW- 235
             FTPHV+TV AGED++ KI  FSQQG R +CILSA+G I NVTLRQ   SGGT+TYE  + 
Sbjct:   178 FTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYEGHFE 237

Query:   236 VECVPGRVRWPSFGWFSCRNAHGSFSSAGNCGQFYCGG 273
             +  + G       G    R    S S AG  G+ + GG
Sbjct:   238 ILSLTGSFIPSESGGTRSRAGGMSVSLAGQDGRVFGGG 275

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2098861 AT3G61310 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 70/161 (43%), Positives = 89/161 (55%)

Query:    85 DGSP--SLRTGGGSFSIDPA-----KKKRGRPRKYTPDG-NIALRLATTAQXXXXXXXXX 136
             D SP  S     G+    P+     K+KRGRPRKY  DG +++L L+ +           
Sbjct:    76 DSSPADSSAAAAGALVAPPSGDTSVKRKRGRPRKYGQDGGSVSLALSPSISNVSPNSN-- 133

Query:   137 XXXXXXXXXXXXXXXKRHRGRPPGSGKKQ-LDALGGV----GGVGFTPHVITVKAGEDIS 191
                            KR RGRPPGSGKKQ L ++G +     G+ FTPHVI V  GEDI+
Sbjct:   134 ---------------KRGRGRPPGSGKKQRLSSIGEMMPSSTGMSFTPHVIVVSIGEDIA 178

Query:   192 SKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYE 232
             SK+ +FS QGPR +C+LSASGA+   TL QP  S GT+ YE
Sbjct:   179 SKVISFSHQGPRAICVLSASGAVSTATLLQPAPSHGTIIYE 219

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2167988 AT5G62260 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
 Identities = 45/101 (44%), Positives = 59/101 (58%)

Query:   174 GVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGGTVTYE- 232
             G  FT H  TV  GED++ K+  +SQQG R +CILSA+G+I NVTL QPT +GGT+TYE 
Sbjct:   157 GANFTTHQFTVNGGEDVTMKVMPYSQQGSRAICILSATGSISNVTLGQPTNAGGTLTYEG 216

Query:   233 KWWVECVPGRVRWPSFGWFSCRNAHGSFSSAGNCGQFYCGG 273
             ++ +  + G       G    R    S S AG  G  + GG
Sbjct:   217 RFEILSLSGSFMPTENGGTKGRAGGMSISLAGPNGNIFGGG 257

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 70/182 (38%), Positives = 92/182 (50%)

Query:   103 KKKRGRPRKYTPDGNIALRLATTAQXXXXXXXXXXXXXXXXXXXXXXXXKRHRGRPPGSG 162
             KKKRGRPRKY PDG +     +                           KR + +P  S 
Sbjct:    89 KKKRGRPRKYGPDGTVVA--LSPKPISSAPAPSHLPPPSSHVIDFSASEKRSKVKPTNSF 146

Query:   163 KK-----QLDALG-----GVGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASG 212
              +     Q++ LG      VGG  FTPH+ITV  GED++ KI +FSQQGPR++C+LSA+G
Sbjct:   147 NRTKYHHQVENLGEWAPCSVGG-NFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANG 205

Query:   213 AICNVTLRQPTMSGGTVTYE-KWWVECVPGRVRWPSFGWFSCRNAHGSFSSAGNCGQFYC 271
              I +VTLRQP  SGGT+TYE ++ +  + G       G    R    S S A   G+   
Sbjct:   206 VISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNDSGGTRSRTGGMSVSLASPDGRVVG 265

Query:   272 GG 273
             GG
Sbjct:   266 GG 267

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2031321 AT1G63470 [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 67/177 (37%), Positives = 93/177 (52%)

Query:   103 KKKRGRPRKYTPDGNIALRLATTAQXXXXXXXXXXXXXXXXXXXXXXXXKRHRGRPPGSG 162
             KKKRGRPRKY PDG ++L L+                            KR RGRPPG+G
Sbjct:   105 KKKRGRPRKYVPDGQVSLGLSPMP-------CVSKKSKDSSSMSDPNAPKRARGRPPGTG 157

Query:   163 KKQ-LDALGG----VGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNV 217
             +KQ L  LG       G+ F PHVI+V +GEDI SK+ +FSQ+ PR +CI+S +G + +V
Sbjct:   158 RKQRLANLGEWMNTSAGLAFAPHVISVGSGEDIVSKVLSFSQKRPRALCIMSGTGTVSSV 217

Query:   218 TLRQPTMSGGTVTYE-KWWVECVPGRVRWPSFGWFSCRNAHGSFSSAGNCGQFYCGG 273
             TLR+P  +  ++T+E ++ +  + G       G    R    S S +G  G    GG
Sbjct:   218 TLREPASTTPSLTFEGRFEILSLGGSYLVNEEGGSKSRTGGLSVSLSGPEGHVIGGG 274

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_1180010 hypothetical protein (375 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	303
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	5e-13
cd11378	113	cd11378, DUF296, Domain of unknown function found	6e-10

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score = 64.1 bits (157), Expect = 5e-13
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQP---TMSGGTVTYE 232
             PHV+ ++ GED+   + AF++Q      +LS  GA+ NVTLRQP     S G VT E
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLE 59

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score = 55.7 bits (135), Expect = 6e-10
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQP---TMSGGTVTYE 232
            P V+ ++ GED+   + AF+++      +LS  GA+ N TLR P        TVT+E
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFE 58

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	303
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.93
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.87
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.5
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.47
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	87.78

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.93  E-value=2.9e-26  Score=189.97  Aligned_cols=115  Identities=20%  Similarity=0.140  Sum_probs=100.5

Q ss_pred             ceEEEEEecCCCcHHHHHHHHHhhCCceEEEEeecceeeeEEEcCCC--CCCCeeeEEEEEEEecccceecCCCCCCccC
Q 022052          177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPT--MSGGTVTYEKWWVECVPGRVRWPSFGWFSCR  254 (303)
Q Consensus       177 ftpHVIrV~~GEDV~~kI~~faqq~~raicILSa~GaVSnVTLRqp~--ssg~tvt~eG~FEILSLsGTi~p~~g~~~~~  254 (303)
                      ||+|++||++||||.++|.+||+++++..|+|||+|+|++|+|++++  ......+|+|+|||+||+||+...++   .+
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g---~~   77 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG---KP   77 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT---EE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC---CC
Confidence            68999999999999999999999999988999999999999999984  34458899999999999999997544   45


Q ss_pred             CCeeEEEEeCCCCceeeceeE---EeeeEEEEeeecCCCCceee
Q 022052          255 NAHGSFSSAGNCGQFYCGGEK---VELKFFEIWAFFSTNAPYVK  295 (303)
Q Consensus       255 ~~HlHISLAg~~GqViGGglv---v~~tv~vI~a~f~~n~~f~R  295 (303)
                      +.|+||+|+|.+|+|+|||++   +..++|+++-.+ ....|+|
T Consensus        78 ~~HlHisl~~~~g~v~gGHl~~g~v~~t~Ev~i~~~-~~~~~~~  120 (120)
T PF03479_consen   78 FVHLHISLADPDGQVFGGHLLEGTVFATAEVVITEL-SGINFTR  120 (120)
T ss_dssp             EEEEEEEEE-TTSEEEEEEEEEEEEEEEEEEEEEEE-TTEEEEE
T ss_pred             cceEEEEEECCCCeEEeeEeCCCEEeEEEEEEEEEe-cCccccC
Confidence            799999999999999999997   345688888888 7888877

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.87  E-value=1e-21  Score=169.22  Aligned_cols=120  Identities=14%  Similarity=-0.027  Sum_probs=108.2

Q ss_pred             CceEEEEEecCCCcHHHHHHHHHhhCCceEEEEeecceeeeEEEcCCCCCC---CeeeEEEEEEEecccceecCCCCCCc
Q 022052          176 GFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEKWWVECVPGRVRWPSFGWFS  252 (303)
Q Consensus       176 ~ftpHVIrV~~GEDV~~kI~~faqq~~raicILSa~GaVSnVTLRqp~ssg---~tvt~eG~FEILSLsGTi~p~~g~~~  252 (303)
                      .-+-+++||++|||+++.|.+||+++.+..++++|+|++++++||+++..+   .++++.|+||||||.|++..++    
T Consensus         8 ~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~----   83 (141)
T COG1661           8 SGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD----   83 (141)
T ss_pred             cceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC----
Confidence            346899999999999999999999999888999999999999999998543   3889999999999999999987    


Q ss_pred             cCCCeeEEEEeCCCCceeeceeE---EeeeEEEEeeecCCCCceeeccCCCC
Q 022052          253 CRNAHGSFSSAGNCGQFYCGGEK---VELKFFEIWAFFSTNAPYVKLRCTYD  301 (303)
Q Consensus       253 ~~~~HlHISLAg~~GqViGGglv---v~~tv~vI~a~f~~n~~f~Rlp~~~~  301 (303)
                       |..|+|+++++++|.++|||++   |.-|+||+|-.+ +...++|.+|+.+
T Consensus        84 -p~~HlHa~l~~~~G~~~GGHL~~~~V~~t~Ev~I~el-~~~~~~R~~d~~g  133 (141)
T COG1661          84 -PFVHLHAALGDENGITLGGHLLEGEVFPTAEVFIREL-PGELFRREFDPTG  133 (141)
T ss_pred             -CcEEEEEEEecCCCcEEeeeecccEEeEEEEEEEEEc-cccceeEecCCCC
Confidence             5799999999999999999985   333799999999 8888999999843

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.50  E-value=0.00093  Score=36.71  Aligned_cols=12  Identities=67%  Similarity=1.088  Sum_probs=4.6

Q ss_pred             cccCCCCCCCCC
Q 022052          103 KKKRGRPRKYTP  114 (303)
Q Consensus       103 KkKRGRPRKY~p  114 (303)
                      +||||||+|+..
T Consensus         1 ~r~RGRP~k~~~   12 (13)
T PF02178_consen    1 KRKRGRPRKNAK   12 (13)
T ss_dssp             S--SS--TT---
T ss_pred             CCcCCCCccccC
Confidence            689999999854

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.47  E-value=0.0014  Score=42.17  Aligned_cols=15  Identities=60%  Similarity=0.922  Sum_probs=12.7

Q ss_pred             cccCCCCCCCCCCCc
Q 022052          103 KKKRGRPRKYTPDGN  117 (303)
Q Consensus       103 KkKRGRPRKY~pdg~  117 (303)
                      |||||||||+..+..
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            699999999977653

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=87.78  E-value=0.18  Score=46.23  Aligned_cols=12  Identities=75%  Similarity=1.115  Sum_probs=10.5

Q ss_pred             cCcccCCCCCCC
Q 022052          101 PAKKKRGRPRKY  112 (303)
Q Consensus       101 ~~KkKRGRPRKY  112 (303)
                      .+|||||||||-
T Consensus        66 dAKRKRGRPRKK   77 (219)
T PF14621_consen   66 DAKRKRGRPRKK   77 (219)
T ss_pred             hhhhhcCCCccC
Confidence            569999999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	303
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.94
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.94
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.94
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.94
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.93
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.88
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	96.58

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.94  E-value=7.7e-27  Score=197.65  Aligned_cols=115  Identities=12%  Similarity=0.080  Sum_probs=104.3

Q ss_pred             ceEEEEEecCCCcHHHHHHHHHhhCCc-eEEEEeecceeeeEEEcCCCCCCCeeeEEEEEEEecccceecCCCCCCccCC
Q 022052          177 FTPHVITVKAGEDISSKIFAFSQQGPR-TVCILSASGAICNVTLRQPTMSGGTVTYEKWWVECVPGRVRWPSFGWFSCRN  255 (303)
Q Consensus       177 ftpHVIrV~~GEDV~~kI~~faqq~~r-aicILSa~GaVSnVTLRqp~ssg~tvt~eG~FEILSLsGTi~p~~g~~~~~~  255 (303)
                      |++|++||++||||.++|.+||+++++ +.||++++|++++++||+++. ..+++|+|+|||+||+||+.++.       
T Consensus         2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~-~~~~~~~g~~EIlsl~Gti~~~~-------   73 (142)
T 2p6y_A            2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADS-VSTLQVSAPFEILSLSGTLTYQH-------   73 (142)
T ss_dssp             CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTS-SCEEEECSCEEEEEEEEEECSSC-------
T ss_pred             CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCC-CccEecCCcEEEEEeEEEEeCCC-------
Confidence            789999999999999999999999885 799999999999999999995 44789999999999999999862       


Q ss_pred             CeeEEEEeCCCCceeeceeE----EeeeEEEEeeecCCCCceeeccCCC
Q 022052          256 AHGSFSSAGNCGQFYCGGEK----VELKFFEIWAFFSTNAPYVKLRCTY  300 (303)
Q Consensus       256 ~HlHISLAg~~GqViGGglv----v~~tv~vI~a~f~~n~~f~Rlp~~~  300 (303)
                      .|+||+++|.+|+|+|||++    |..++|+++..| .++.|+|++|++
T Consensus        74 ~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~-~~~~~~R~~D~e  121 (142)
T 2p6y_A           74 CHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY-PQHHFTREFDPN  121 (142)
T ss_dssp             EEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEEC-TTEEEEEEEETT
T ss_pred             CEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEc-cCCeEEEeeCCC
Confidence            89999999999999999875    456799999999 898999999974

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.94  E-value=1.2e-26  Score=198.99  Aligned_cols=120  Identities=15%  Similarity=0.163  Sum_probs=108.0

Q ss_pred             cCCCCceEEEEEecCCCcHHHHHHHHHhhCC-ceEEEEeecceeeeEEEcCCCCCCCeeeEEEEEEEecccceecCCCCC
Q 022052          172 VGGVGFTPHVITVKAGEDISSKIFAFSQQGP-RTVCILSASGAICNVTLRQPTMSGGTVTYEKWWVECVPGRVRWPSFGW  250 (303)
Q Consensus       172 ~~g~~ftpHVIrV~~GEDV~~kI~~faqq~~-raicILSa~GaVSnVTLRqp~ssg~tvt~eG~FEILSLsGTi~p~~g~  250 (303)
                      +....+++|++||++||||.++|.+||++++ ++.||++++|+|++++||+++.. .+++|+|+|||+||+||+++++  
T Consensus        13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~-~~~~~~g~~EIlsl~Gti~~~~--   89 (154)
T 2hx0_A           13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQE-ATTSLTGTFEVISLNGTLELTG--   89 (154)
T ss_dssp             CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCS-SCEEEEEEEEEEEEEEEEETTE--
T ss_pred             CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCC-ccEecCCcEEEEEeeeeEeCCC--
Confidence            4557889999999999999999999998777 58999999999999999999954 4889999999999999999862  


Q ss_pred             CccCCCeeEEEEeCCCCceeeceeE----EeeeEEEEeeecCCCCceeeccCCC
Q 022052          251 FSCRNAHGSFSSAGNCGQFYCGGEK----VELKFFEIWAFFSTNAPYVKLRCTY  300 (303)
Q Consensus       251 ~~~~~~HlHISLAg~~GqViGGglv----v~~tv~vI~a~f~~n~~f~Rlp~~~  300 (303)
                           .|+||+++|.+|+|+|||++    |..++|+++..| .++.|+|++|++
T Consensus        90 -----~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~-~~~~~~R~~D~e  137 (154)
T 2hx0_A           90 -----EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL-PALTFSRQPCAI  137 (154)
T ss_dssp             -----EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEEC-TTEEEEEEECTT
T ss_pred             -----CEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEc-cCceEEEecCCC
Confidence                 89999999999999999875    456799999999 888999999975

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.94  E-value=5.1e-27  Score=198.29  Aligned_cols=118  Identities=12%  Similarity=0.008  Sum_probs=104.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHhhCCceEEEEeecceeeeEEEcCCCCCC---CeeeEEEEEEEecccceecCCCCCCccC
Q 022052          178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEKWWVECVPGRVRWPSFGWFSCR  254 (303)
Q Consensus       178 tpHVIrV~~GEDV~~kI~~faqq~~raicILSa~GaVSnVTLRqp~ssg---~tvt~eG~FEILSLsGTi~p~~g~~~~~  254 (303)
                      ++|++||++||||.++|.+||+++++..|+++++|+|++|+||+++...   ..++|+|+|||+||+||+.+++|   .+
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g---~p   86 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDG---EP   86 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETT---EE
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCC---Cc
Confidence            6999999999999999999999998776667999999999999998554   27889999999999999998765   45


Q ss_pred             CCeeEEEEeCCCCceeeceeEEe--eeEEEEeeecCCCCceeeccCCC
Q 022052          255 NAHGSFSSAGNCGQFYCGGEKVE--LKFFEIWAFFSTNAPYVKLRCTY  300 (303)
Q Consensus       255 ~~HlHISLAg~~GqViGGglvv~--~tv~vI~a~f~~n~~f~Rlp~~~  300 (303)
                      +.|+||+++|.+|+|+|||++-.  .++|+++..| .++.|+|++ ++
T Consensus        87 ~~HlHi~l~~~~G~v~GGHl~~g~v~t~Ev~i~~~-~~~~~~R~~-~e  132 (143)
T 2dt4_A           87 FVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQEL-KGEKIERKP-TK  132 (143)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEE-EESCCEEBC-CT
T ss_pred             eeeEEEEEECCCCCEeCCCCCCCceEEEEEEEEEc-CCCeEEEeC-CC
Confidence            79999999999999999998743  2788999999 899999999 54

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.94  E-value=5.1e-27  Score=198.89  Aligned_cols=118  Identities=10%  Similarity=-0.059  Sum_probs=105.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHhhCCceEEEEeecceeeeEEEcCCCCCC---CeeeEEEEEEEecccceecCCCCCCccC
Q 022052          178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEKWWVECVPGRVRWPSFGWFSCR  254 (303)
Q Consensus       178 tpHVIrV~~GEDV~~kI~~faqq~~raicILSa~GaVSnVTLRqp~ssg---~tvt~eG~FEILSLsGTi~p~~g~~~~~  254 (303)
                      ++|++||++||||.++|.+||+++++..|+++++|+|++++||+++...   .+++|+|+|||+||+||+.+++|   .+
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg---~p   86 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS---KP   86 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT---EE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCC---Cc
Confidence            6999999999999999999999988765556999999999999998655   27899999999999999998765   45


Q ss_pred             CCeeEEEEeCCCCceeeceeEEe--eeEEEEeeecCCCCceeeccCCC
Q 022052          255 NAHGSFSSAGNCGQFYCGGEKVE--LKFFEIWAFFSTNAPYVKLRCTY  300 (303)
Q Consensus       255 ~~HlHISLAg~~GqViGGglvv~--~tv~vI~a~f~~n~~f~Rlp~~~  300 (303)
                      +.|+||+++ .+|+|+|||++-.  .++|+++..| .++.|+|++|++
T Consensus        87 ~~HlHi~l~-~~G~v~gGHl~~g~V~t~Evvi~~~-~~~~~~R~~D~e  132 (146)
T 2h6l_A           87 FCHIHVLLG-KDGEVYGGHLFSAEVFACEVFVLPL-SGEAPERAFDEQ  132 (146)
T ss_dssp             EEEEEEEEE-EBTEEEEEEEEEEEEEEEEEEEEEC-BSCCCBEEECTT
T ss_pred             eeeEEEEEC-CCCcEEeeecCCCEEEEEEEEEEEc-CCCcEEEeECCC
Confidence            799999999 9999999998655  7899999999 899999999985

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.93  E-value=3.3e-26  Score=195.35  Aligned_cols=118  Identities=10%  Similarity=-0.064  Sum_probs=105.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHhhCCceEEEEeecceeeeEEEcCCCCCCC---eeeEEEEEEEecccceecCCCCCCccC
Q 022052          178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGG---TVTYEKWWVECVPGRVRWPSFGWFSCR  254 (303)
Q Consensus       178 tpHVIrV~~GEDV~~kI~~faqq~~raicILSa~GaVSnVTLRqp~ssg~---tvt~eG~FEILSLsGTi~p~~g~~~~~  254 (303)
                      +.|++||++||||+++|.+||+++++..|+++++|++++|+||+++...+   .++|+|+|||+||+||+++++|   .+
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG---~p   92 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE---QV   92 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT---EE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC---Cc
Confidence            68999999999999999999999998877779999999999999875432   7899999999999999998765   45


Q ss_pred             CCeeEEEEeCCCCceeeceeE---EeeeEEEEeeecCCCCceeeccCCC
Q 022052          255 NAHGSFSSAGNCGQFYCGGEK---VELKFFEIWAFFSTNAPYVKLRCTY  300 (303)
Q Consensus       255 ~~HlHISLAg~~GqViGGglv---v~~tv~vI~a~f~~n~~f~Rlp~~~  300 (303)
                      +.|+|++++|.+|+|+|||++   +..|+|+++..+ .. .|.|.+|++
T Consensus        93 ~~HlH~sl~~~~G~v~gGHl~~g~V~~t~Ei~i~~~-~~-~~~R~~D~~  139 (149)
T 3htn_A           93 YLHLHITVGRSDYSALAGHLLSAIQNGAGEFVVEDY-SE-RISRTYNPD  139 (149)
T ss_dssp             EEEEEEEEECTTSBEEEEEEEEEEEEEEEEEEEEEC-CS-CCEEEEETT
T ss_pred             eEEEEEEEECCCCCEEeEEeCCCEEEEEEEEEEEEc-CC-eeEEeeCCc
Confidence            799999999999999999986   455799999999 67 899999974

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.88  E-value=1.3e-22  Score=172.67  Aligned_cols=117  Identities=9%  Similarity=-0.053  Sum_probs=101.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHhhCCceEEEEeecceeeeEEEcCCCCCCC---eeeEEEEEEEecccceecCCCCCCccC
Q 022052          178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGG---TVTYEKWWVECVPGRVRWPSFGWFSCR  254 (303)
Q Consensus       178 tpHVIrV~~GEDV~~kI~~faqq~~raicILSa~GaVSnVTLRqp~ssg~---tvt~eG~FEILSLsGTi~p~~g~~~~~  254 (303)
                      +-+++||++||||+++|.+||+++++..++++++|++++++||.++...+   ..+++ +|||+||+||+++++|   .+
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG---~p   88 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG---KP   88 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT---EE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC---Cc
Confidence            35899999999999999999999998888889999999999999885432   56788 8999999999998765   56


Q ss_pred             CCeeEEEEeCCCCceeeceeE---Ee-eeEEEEeeecCCCCceeeccCCC
Q 022052          255 NAHGSFSSAGNCGQFYCGGEK---VE-LKFFEIWAFFSTNAPYVKLRCTY  300 (303)
Q Consensus       255 ~~HlHISLAg~~GqViGGglv---v~-~tv~vI~a~f~~n~~f~Rlp~~~  300 (303)
                      +.|+|++++|.+|+|+|||++   |. .|+|+++..+ . ..|.|.+|++
T Consensus        89 ~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~-~-~~~~R~~D~~  136 (147)
T 3hwu_A           89 SIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY-P-QRLDRFVDPE  136 (147)
T ss_dssp             EEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEE-S-SCCBEEEETT
T ss_pred             eEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEc-C-CeEEEEECCc
Confidence            799999999999999999985   34 3778888877 4 5999999974

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=96.58  E-value=0.00095  Score=41.78  Aligned_cols=16  Identities=56%  Similarity=0.881  Sum_probs=14.3

Q ss_pred             cccCCCCCCCCCCCCc
Q 022052          150 SAKRHRGRPPGSGKKQ  165 (303)
Q Consensus       150 ~~kr~RGRP~GSk~k~  165 (303)
                      ..||+||||.|||||.
T Consensus         3 tpKrpRgRpkGSKNk~   18 (26)
T 2ezd_A            3 TPKRPRGRPKGSKNKG   18 (26)
T ss_dssp             SCCCCSSCCTTCCCCS
T ss_pred             CCcCCCCCcCcccccC
Confidence            5699999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	303
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	1e-06
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	2e-05

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 180 HVITVKAGEDISSKIFAFS-QQGPRTVCILSASGAICNVTLRQPTMSGGTVTYEKWW 235
           + + +  G+++ S++ AF  Q   R   I   +G++ +V LR       T +    +
Sbjct: 9   YALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAG-QEATTSLTGTF 64

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 180 HVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLR---QPTMSGGTVTYE 232
            ++ +  G+D+  +I  F ++       +SA GA+ +  +    Q           
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELM 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	303
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.93
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.89

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.93  E-value=3.9e-26  Score=190.28  Aligned_cols=119  Identities=15%  Similarity=0.175  Sum_probs=108.9

Q ss_pred             CCCCceEEEEEecCCCcHHHHHHHHHhhCC-ceEEEEeecceeeeEEEcCCCCCCCeeeEEEEEEEecccceecCCCCCC
Q 022052          173 GGVGFTPHVITVKAGEDISSKIFAFSQQGP-RTVCILSASGAICNVTLRQPTMSGGTVTYEKWWVECVPGRVRWPSFGWF  251 (303)
Q Consensus       173 ~g~~ftpHVIrV~~GEDV~~kI~~faqq~~-raicILSa~GaVSnVTLRqp~ssg~tvt~eG~FEILSLsGTi~p~~g~~  251 (303)
                      +++..|.|++||++||||+++|.+||++++ ++.||++++|++++|+|++++ ......++|+|||+||+||+...+   
T Consensus         2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~-~~~~~~~~g~~Ei~sl~G~I~~~~---   77 (136)
T d2hx0a1           2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAG-QEATTSLTGTFEVISLNGTLELTG---   77 (136)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTT-CSSCEEEEEEEEEEEEEEEEETTE---
T ss_pred             CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCC-CCCcEEecCcEEEEEEEEEeccCC---
Confidence            456789999999999999999999998887 689999999999999999998 456778999999999999998875   


Q ss_pred             ccCCCeeEEEEeCCCCceeecee----EEeeeEEEEeeecCCCCceeeccCCC
Q 022052          252 SCRNAHGSFSSAGNCGQFYCGGE----KVELKFFEIWAFFSTNAPYVKLRCTY  300 (303)
Q Consensus       252 ~~~~~HlHISLAg~~GqViGGgl----vv~~tv~vI~a~f~~n~~f~Rlp~~~  300 (303)
                          .|+|++++|.+|+|+|||+    ++.+++|+++..| .+..|+|.+|+.
T Consensus        78 ----~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l-~~~~~~R~~D~~  125 (136)
T d2hx0a1          78 ----EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL-PALTFSRQPCAI  125 (136)
T ss_dssp             ----EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEEC-TTEEEEEEECTT
T ss_pred             ----CeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEc-cCCceEEccCCC
Confidence                7999999999999999986    5677899999999 899999999875

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.89  E-value=7.4e-24  Score=175.53  Aligned_cols=119  Identities=10%  Similarity=-0.071  Sum_probs=104.3

Q ss_pred             eEEEEEecCCCcHHHHHHHHHhhCCceEEEEeecceeeeEEEcCCCCCCC---eeeEEEEEEEecccceecCCCCCCccC
Q 022052          178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGG---TVTYEKWWVECVPGRVRWPSFGWFSCR  254 (303)
Q Consensus       178 tpHVIrV~~GEDV~~kI~~faqq~~raicILSa~GaVSnVTLRqp~ssg~---tvt~eG~FEILSLsGTi~p~~g~~~~~  254 (303)
                      +.|++||++||||+++|.+||+++.+..|+++++|++++++||+++...+   .+.++|+|||+||+|++...++   .+
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g---~p   86 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS---KP   86 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT---EE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCC---Cc
Confidence            68999999999999999999999999889999999999999998775444   6789999999999999987765   45


Q ss_pred             CCeeEEEEeCCCCceeeceeEEee--eEEEEeeecCCCCceeeccCCCC
Q 022052          255 NAHGSFSSAGNCGQFYCGGEKVEL--KFFEIWAFFSTNAPYVKLRCTYD  301 (303)
Q Consensus       255 ~~HlHISLAg~~GqViGGglvv~~--tv~vI~a~f~~n~~f~Rlp~~~~  301 (303)
                      +.|+|+++++ +|+++|||++-..  ++++++-.+ .+..|.|.+|++.
T Consensus        87 ~~HlH~~~~~-~g~~~gGHl~~~~v~~~e~~i~~~-~~~~~~R~~D~~t  133 (138)
T d2h6la1          87 FCHIHVLLGK-DGEVYGGHLFSAEVFACEVFVLPL-SGEAPERAFDEQT  133 (138)
T ss_dssp             EEEEEEEEEE-BTEEEEEEEEEEEEEEEEEEEEEC-BSCCCBEEECTTT
T ss_pred             EEEEEEEECC-CCCEEEEEeCccEEEEEEEEEEEe-cCCceEEecCCcc
Confidence            7999999997 7999999986543  367777778 8999999998854