Citrus Sinensis ID: 022057

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
Protein Sequence
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKVTNHIIFQTVCIN
Secondary Structure (PSIPRED)
ccccccEEEcccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHcccccEEEEEEccccccccHHHHccccccccccEEccHHHHHHHHcccccccEEEEccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHHcccccEEEEccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEccccccEEEEEEcccccEEEEEEEcccccccHHHHHHHHHHHHccccccEEcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccHHccccccccEEEEEccccccccEEEEEccccHHHHHHHHHHHHccccEEEEEEEcccccccHHHHcccccccccEEcccHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHccccccHEEEccccccccccccccEEEEEEccccEEEEEEEEEccccEEEEEEccccHHHHHHHHHHHHHHHHHcccccccHHHHcccc
Coil and Loop (DISEMBL)
matlgcqfhcrmhhisqnvkakrfiscstnppqsniKVIINGAVKEIGRAAVIAVTKARGMEvagaidshsvgedigmvcdmeqpleipvmSDLTMVLGSISQSKARAVVIDftdastvydnVKQATAFGMRSVVYVPHIQLETVSALSAFCdkasmgcliaptlsIGSILLQQAAISAsfhyknveivesrpnardfpspdaTQIANNLSNlgqiynredistDVKARGqvlgedgvrvhsmvlpglpssttvyfsrpgevysikhditdvqsLMPGLILAIRKVVHLKVTNHIIFQTVCIN
Flexible Loop (DISEMBL)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKVTNHIIFQTVCIN
Low Complexity Region (SEG)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKVTNHIIFQTVCIN
Disordered region (IsUnstruct)
***LGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIV********************LSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKVTNHIIFQTVCI*
Disordered Region (DISOPRED)
*******FHC***************************VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKVTNHIIFQTVCIN
Disordered Region (DISEMBL)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKVTNHIIFQTVCIN
Disordered Region (DISPRO)
*ATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKVTNHIIFQTVCIN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKVTNHIIFQTVCIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	303	2.2.26 [Sep-21-2011]
Q9FJ82	298	Putative 4-hydroxy-tetrah	yes	no	0.943	0.959	0.767	1e-127
B8HRK9	275	4-hydroxy-tetrahydrodipic	yes	no	0.844	0.930	0.443	1e-53
Q8YU19	278	4-hydroxy-tetrahydrodipic	yes	no	0.848	0.924	0.421	7e-52
Q3MFY8	278	4-hydroxy-tetrahydrodipic	yes	no	0.848	0.924	0.417	1e-51
Q9S3W8	278	4-hydroxy-tetrahydrodipic	N/A	no	0.848	0.924	0.409	2e-51
Q10YI1	275	4-hydroxy-tetrahydrodipic	yes	no	0.841	0.927	0.429	7e-51
P72642	275	4-hydroxy-tetrahydrodipic	N/A	no	0.844	0.930	0.420	5e-50
B2J0A9	278	4-hydroxy-tetrahydrodipic	yes	no	0.844	0.920	0.411	1e-49
B7KBV6	275	4-hydroxy-tetrahydrodipic	yes	no	0.848	0.934	0.414	1e-49
B7JW41	275	4-hydroxy-tetrahydrodipic	yes	no	0.841	0.927	0.406	3e-47

>sp|Q9FJ82|DAPB3_ARATH Putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=DAPB3 PE=2 SV=1

 Score =  454 bits (1169), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/292 (76%), Positives = 254/292 (86%), Gaps = 6/292 (2%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR-FISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA + C F      +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAV+AVTKA
Sbjct: 1   MAAVNCHFF----QLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKA 56

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGME+AGA+D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD ST
Sbjct: 57  RGMELAGAVDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPST 116

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VY+NVKQATAFGM+SVVYVP I+ ETVSALSA CDKA+MGCL+APTLSIGSILLQQA I 
Sbjct: 117 VYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIM 176

Query: 179 ASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGV 238
           ASFHY NVE+VESRPNA D PSP+A QIANN+SNLGQIYNRED STDV+ARGQV+GEDGV
Sbjct: 177 ASFHYNNVELVESRPNAADLPSPEAIQIANNISNLGQIYNREDSSTDVQARGQVIGEDGV 236

Query: 239 RVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLK 290
           RVHSMVLPGLPSST VYFS PG+VY++KHDI DV+SLMPGL+LAIRKVV LK
Sbjct: 237 RVHSMVLPGLPSSTQVYFSSPGDVYTVKHDIIDVRSLMPGLLLAIRKVVRLK 288

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 2EC: 6

>sp|B8HRK9|DAPB_CYAP4 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dapB PE=3 SV=1

 Score =  209 bits (533), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 117/264 (44%), Positives = 168/264 (63%), Gaps = 8/264 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           Q  I VI+NGA  ++GR  V AV +A  + + GA+D +    G+DIG V  +  PLE+P+
Sbjct: 4   QGAIPVIVNGAAGKMGREVVKAVAQAADLTLFGAVDRNPSLQGQDIGEVVGI-GPLEVPL 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           ++DL  +L + +Q     V++DFT  ++VYDNV+ A A+G+R VV    +  E +  L+ 
Sbjct: 63  LADLQSLLVAAAQEPQAGVMVDFTHPNSVYDNVRMAIAYGVRPVVGTTGLSPEQIRDLAT 122

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANN 209
           F DKASMGCLI P  SIG +LLQQAAI AS ++ +VEI+E   N + D PS  A Q A  
Sbjct: 123 FADKASMGCLIIPNFSIGMVLLQQAAIQASQYFDHVEIIELHHNQKADAPSGTALQTAQL 182

Query: 210 LSNLGQIYNREDISTD---VKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIK 266
           L+ LG+ YN   +        ARG  L E+G+R+HS+ LPGL +   V F  PG+VY+++
Sbjct: 183 LAELGKTYNPPAVKETEHLAGARGS-LAEEGIRIHSVRLPGLIAHQEVIFGAPGQVYTLR 241

Query: 267 HDITDVQSLMPGLILAIRKVVHLK 290
           HD +D    MPG++LAIRKV++L+
Sbjct: 242 HDTSDRSCYMPGVLLAIRKVMNLE 265

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8YU19|DAPB_NOSS1 4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=dapB PE=3 SV=1

 Score =  204 bits (518), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 112/266 (42%), Positives = 166/266 (62%), Gaps = 9/266 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPV 90
           Q+ I VI+NGA  ++GR  V AV +A  + + GAIDS     G+D G +  + +PLE+P+
Sbjct: 4   QAPIPVIVNGAAGKMGREVVKAVAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLEVPI 63

Query: 91  MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
            + L  +LG ++  +     V++DFT   +VYDNV+ A A+G+R VV    +    +  L
Sbjct: 64  TNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNL 123

Query: 149 SAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIA 207
           + F +KAS GCLI P  SIG +LLQQAA++AS ++ +VEI+E   N + D PS  A Q A
Sbjct: 124 ADFAEKASTGCLIIPNFSIGMVLLQQAAVTASQYFDHVEIIELHHNQKADAPSGTAIQTA 183

Query: 208 NNLSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYS 264
             L+ LG+ +N    E+      ARG  L E+G+R+HS+ LPGL +   V F  PG++Y+
Sbjct: 184 ELLAELGKTFNSAIVEETEKIPGARGS-LAEEGIRIHSVRLPGLIAHQEVIFGAPGQIYT 242

Query: 265 IKHDITDVQSLMPGLILAIRKVVHLK 290
           ++HD +D    MPG++LAIRKV+ LK
Sbjct: 243 LRHDTSDRACYMPGVLLAIRKVLQLK 268

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q3MFY8|DAPB_ANAVT 4-hydroxy-tetrahydrodipicolinate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dapB PE=3 SV=1

 Score =  203 bits (516), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 111/266 (41%), Positives = 166/266 (62%), Gaps = 9/266 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPV 90
           Q+ I VI+NGA  ++GR  V A+ +A  + + GAIDS     G+D G +  + +PLE+P+
Sbjct: 4   QAPIPVIVNGAAGKMGREVVKAIAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLEVPI 63

Query: 91  MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
            + L  +LG ++  +     V++DFT   +VYDNV+ A A+G+R VV    +    +  L
Sbjct: 64  TNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNL 123

Query: 149 SAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIA 207
           + F +KAS GCLI P  SIG +LLQQAA++AS ++ +VEI+E   N + D PS  A Q A
Sbjct: 124 ADFAEKASTGCLIIPNFSIGMVLLQQAAVTASQYFDHVEIIELHHNQKADAPSGTAIQTA 183

Query: 208 NNLSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYS 264
             L+ LG+ +N    E+      ARG + GE G+R+HS+ LPGL +   V F  PG++Y+
Sbjct: 184 ELLAELGKTFNSAIVEETEKIPGARGSLAGE-GIRIHSVRLPGLIAHQEVIFGAPGQIYT 242

Query: 265 IKHDITDVQSLMPGLILAIRKVVHLK 290
           ++HD +D    MPG++LAIRKV+ LK
Sbjct: 243 LRHDTSDRACYMPGVLLAIRKVLQLK 268

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9S3W8|DAPB_MASLA 4-hydroxy-tetrahydrodipicolinate reductase OS=Mastigocladus laminosus GN=dapB PE=3 SV=1

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/266 (40%), Positives = 166/266 (62%), Gaps = 9/266 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           Q+ I VI+NGA  ++GR  + AV +A  M + GA+D++    G+D G V  + +P E+P+
Sbjct: 4   QTPIPVIVNGAAGKMGRETIKAVVQAADMTLMGAVDTNPEYQGKDAGEVAGLNEPTEVPI 63

Query: 91  MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
              L  +L  ++  +     V++DFT    VYDNV+ A A+G+R VV    +  + +  L
Sbjct: 64  TDQLEPILAYVAGERHLQPGVMVDFTHPDAVYDNVRSAIAYGIRPVVGTTGLSSKQIEQL 123

Query: 149 SAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIA 207
           + F +KAS GCLI P  SIG +LLQQAAI+AS ++ +VEI+E   N + D PS  A Q A
Sbjct: 124 ADFAEKASTGCLIIPNFSIGMVLLQQAAIAASQYFDHVEIIELHHNQKADAPSGTAIQTA 183

Query: 208 NNLSNLGQIYNREDISTDVK---ARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYS 264
             L+ +G+ +N+  +    K   ARG + GE G+R+HS+ LPGL +   V F  PG++Y+
Sbjct: 184 QMLAEMGKTFNQPAVKETEKLPGARGSLAGE-GIRIHSVRLPGLIAHQEVIFGAPGQIYT 242

Query: 265 IKHDITDVQSLMPGLILAIRKVVHLK 290
           ++HD +D  + MPG++LAIRKV+ LK
Sbjct: 243 LRHDTSDRTAYMPGVLLAIRKVLQLK 268

Mastigocladus laminosus (taxid: 83541)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q10YI1|DAPB_TRIEI 4-hydroxy-tetrahydrodipicolinate reductase OS=Trichodesmium erythraeum (strain IMS101) GN=dapB PE=3 SV=1

 Score =  201 bits (510), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 113/263 (42%), Positives = 164/263 (62%), Gaps = 8/263 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPV 90
           Q++  VI+ GA  ++GR  +  V  A  M + GAI+     +G+DIG +     PLE+P+
Sbjct: 4   QTSTPVIVCGAAGKMGREVIKTVANASDMTLLGAIECQPEYIGQDIGELIG-SGPLEVPI 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           ++DL  +L   +Q K  AV++DFT   +VY+NV+ A A+G+R VV    +  E +  L+ 
Sbjct: 63  LNDLQGILVMAAQEKQPAVMVDFTHPDSVYENVRSAIAYGVRPVVGTTGLSQEQIQDLAE 122

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANN 209
           F +KAS+G LI P  SIG +LLQQAAI+AS H+ +VEI+E   N + D PS  A + A  
Sbjct: 123 FAEKASIGTLIIPNFSIGMVLLQQAAIAASKHFDHVEIIELHHNQKADAPSGTAIKTAQM 182

Query: 210 LSNLGQIYNREDISTDVK---ARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIK 266
           LS LG+ YN  ++    K   ARG  L E+G+R+HS+ LPGL +   V F  PG++Y+++
Sbjct: 183 LSELGKTYNVPNVEETEKIEGARG-CLAEEGIRIHSVRLPGLIAHQEVIFGGPGQIYTLR 241

Query: 267 HDITDVQSLMPGLILAIRKVVHL 289
           HD TD    MPG++LAIRKV  L
Sbjct: 242 HDTTDRSCYMPGVLLAIRKVQSL 264

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P72642|DAPB_SYNY3 4-hydroxy-tetrahydrodipicolinate reductase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=dapB PE=3 SV=1

 Score =  198 bits (503), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 111/264 (42%), Positives = 164/264 (62%), Gaps = 8/264 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           Q  I V++NGA  ++GR  + AV +A  +++ GA+D +    G+DIG V  +  PLE+PV
Sbjct: 4   QDLIPVVVNGAAGKMGREVIKAVAQAPDLQLVGAVDHNPSLQGQDIGEVVGIA-PLEVPV 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           ++DL  VL   +Q K + V++DFT  S VYDNV+ A A+G+R VV    +  + +  L  
Sbjct: 63  LADLQSVLVLATQEKIQGVMVDFTHPSGVYDNVRSAIAYGVRPVVGTTGLSEQQIQDLGD 122

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANN 209
           F +KAS GCLIAP  +IG +L+QQAA+ A  ++ +VEI+E   N + D PS  A + A  
Sbjct: 123 FAEKASTGCLIAPNFAIGVLLMQQAAVQACQYFDHVEIIELHHNQKADAPSGTAIKTAQM 182

Query: 210 LSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIK 266
           L+ +G+ +N    E+  T   A+G  LG   + +HS+ LPGL +   V F  PG++Y+I+
Sbjct: 183 LAEMGKTFNPPAVEEKETIAGAKGG-LGPGQIPIHSIRLPGLIAHQEVLFGSPGQLYTIR 241

Query: 267 HDITDVQSLMPGLILAIRKVVHLK 290
           HD TD    MPG++L IRKVV LK
Sbjct: 242 HDTTDRACYMPGVLLGIRKVVELK 265

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B2J0A9|DAPB_NOSP7 4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dapB PE=3 SV=1

 Score =  197 bits (500), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 110/267 (41%), Positives = 166/267 (62%), Gaps = 11/267 (4%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---GEDIGMVCDMEQPLEIP 89
           Q+ I VI+NGA  ++GR  + AV +A  + + GAID HS+    +D G +  + +PLE+P
Sbjct: 4   QAPIPVIVNGAAGKMGREVIKAVAQAPDLNLVGAID-HSLEHQDKDAGELAGLSEPLEVP 62

Query: 90  VMSDLTMVLGSISQSKAR--AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSA 147
           + + L  +LG ++  +     V++DFT   +VYDN++ A A+G+R VV    +  E +  
Sbjct: 63  ITNQLEPMLGYVAGDRQSPPGVIVDFTHPDSVYDNIRSAIAYGIRPVVGTTGLSPEQIQD 122

Query: 148 LSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQI 206
           L+ F DKAS GCLI P  SIG +LLQQAAI+AS ++ +VEI+E   N + D PS  A Q 
Sbjct: 123 LADFADKASTGCLIIPNFSIGMVLLQQAAIAASKYFDHVEIIELHHNQKADAPSGTAIQT 182

Query: 207 ANNLSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVY 263
           A  L  LG+ +N    E+      ARG +  ++G+R+HS+ LPGL +   V F   G++Y
Sbjct: 183 AQLLGELGKTFNPALVEETEKLPGARGSI-ADEGIRIHSVRLPGLIAHQEVIFGAAGQIY 241

Query: 264 SIKHDITDVQSLMPGLILAIRKVVHLK 290
           +++HD +D    MPG++LAIRKV+ LK
Sbjct: 242 TLRHDTSDRACYMPGVLLAIRKVLALK 268

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B7KBV6|DAPB_CYAP7 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 7424) GN=dapB PE=3 SV=1

 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 109/263 (41%), Positives = 158/263 (60%), Gaps = 6/263 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           +S I V++NGA  ++G+  + AV++A  M + GA+D +    GED G V     P+E+P+
Sbjct: 4   ESPIPVVVNGAAGKMGKEVIKAVSQAEDMMLVGAVDLNPKYRGEDAGEVAGC-GPVEVPI 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           + DL  VL   +Q K + V++DFT    VYDN++ A A+G+R VV    +  E +  L  
Sbjct: 63  LDDLQSVLVLATQEKVQGVMVDFTHPDGVYDNIRSAIAYGVRPVVGTTGLSGEQIKDLGE 122

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANN 209
           F +KAS GCLI P  SIG ILLQQAA+ AS ++ +VEI+E   N + D PS  A + A  
Sbjct: 123 FAEKASTGCLIVPNFSIGMILLQQAAVQASQYFDHVEIIELHHNQKADAPSGTAIKTAEM 182

Query: 210 LSNLGQIYNREDISTDVKARGQVLG--EDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKH 267
           LS LG+ +N   +      RG   G  E+ + +HS+ LPG  +   V F   G++Y+++H
Sbjct: 183 LSELGKSFNPAKVEETETIRGSRGGITEENIHIHSVRLPGFIAHQEVIFGSTGQIYTLRH 242

Query: 268 DITDVQSLMPGLILAIRKVVHLK 290
           D TD  S MPG++LAIRKV  LK
Sbjct: 243 DTTDRSSFMPGVLLAIRKVTQLK 265

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B7JW41|DAPB_CYAP8 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 8801) GN=dapB PE=3 SV=1

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 162/263 (61%), Gaps = 8/263 (3%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVM 91
           S I V++NGA  ++GR  V AV +A  M + GA+D +    G+D+G V      LE+P++
Sbjct: 5   SLIPVVVNGAAGKMGREVVKAVAQAEDMMLVGAVDYNPNYRGQDVGEVAGC-GALEVPIV 63

Query: 92  SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF 151
            DL  +L   +Q K + V++DFT   +VY+NV+ A A+G+R VV    +  E +  L+ F
Sbjct: 64  DDLQSILVLATQEKIQGVMVDFTHPDSVYENVRSAIAYGVRPVVGTTGLTEEQLKDLADF 123

Query: 152 CDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNL 210
            DKAS GCL+ P  SIG +LLQQAA+ AS ++ +VEI+E   N + D PS  A + A  L
Sbjct: 124 ADKASTGCLVIPNFSIGMVLLQQAAVQASQYFDHVEIIELHHNQKADAPSGTAIKTAQML 183

Query: 211 SNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKH 267
           S LG+ YN    ++  T   A+G ++ +D +R+HS+ LPGL +   V F   GE+Y+++H
Sbjct: 184 SGLGKTYNPPMVKETETIAGAKGALV-DDNIRIHSVRLPGLIAHQEVIFGAKGEIYTLRH 242

Query: 268 DITDVQSLMPGLILAIRKVVHLK 290
           D +D    M G++L+IRKV  L+
Sbjct: 243 DTSDRSCYMAGVLLSIRKVTQLQ 265

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
224136862	300	predicted protein [Populus trichocarpa]	0.957	0.966	0.817	1e-136
225455455	302	PREDICTED: putative dihydrodipicolinate	0.953	0.956	0.803	1e-133
297741105	303	unnamed protein product [Vitis vinifera]	0.953	0.953	0.800	1e-132
255539549	300	dihydrodipicolinate reductase, putative	0.957	0.966	0.775	1e-130
449446063	300	PREDICTED: putative dihydrodipicolinate	0.957	0.966	0.772	1e-128
356575925	301	PREDICTED: putative dihydrodipicolinate	0.953	0.960	0.787	1e-128
357444055	302	Dihydrodipicolinate reductase [Medicago	0.953	0.956	0.774	1e-126
297792539	298	dihydrodipicolinate reductase family pro	0.943	0.959	0.773	1e-126
356535900	301	PREDICTED: putative dihydrodipicolinate	0.953	0.960	0.763	1e-126
15242275	298	putative dihydrodipicolinate reductase 3	0.943	0.959	0.767	1e-125

>gi|224136862|ref|XP_002322434.1| predicted protein [Populus trichocarpa] gi|222869430|gb|EEF06561.1| predicted protein [Populus trichocarpa]

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/290 (81%), Positives = 258/290 (88%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MA L C FH  +H +S+NV  + FISCS  P QSNIKV+INGA KEIGRAAVIAVTKARG
Sbjct: 1   MAALSCHFHFTVHKVSKNVITRPFISCSMQPSQSNIKVVINGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIG +CDME+PLEIP+++DLTMVLGSISQSK   VV+DFTD STVY
Sbjct: 61  MEVAGAVDSHFVGEDIGKLCDMEEPLEIPIINDLTMVLGSISQSKETGVVVDFTDPSTVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS 180
           DNVKQATAFGMRSVVYVP I+L++V ALSAFCDKASMGCLIAPTLSIGSILLQQAAI+AS
Sbjct: 121 DNVKQATAFGMRSVVYVPRIKLDSVGALSAFCDKASMGCLIAPTLSIGSILLQQAAITAS 180

Query: 181 FHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRV 240
           FHY N EIVES+ N  DFPS DA QI+ NLSNLGQIYNREDISTDV ARGQV+GEDGVRV
Sbjct: 181 FHYNNAEIVESKANPIDFPSMDAIQISKNLSNLGQIYNREDISTDVVARGQVIGEDGVRV 240

Query: 241 HSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLK 290
           HSMVLPGLPSSTTVYFS PGEVYSIKHDITDVQSLMPGL+LAIRKV+ LK
Sbjct: 241 HSMVLPGLPSSTTVYFSGPGEVYSIKHDITDVQSLMPGLLLAIRKVIRLK 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455455|ref|XP_002274702.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic [Vitis vinifera] gi|147816661|emb|CAN68386.1| hypothetical protein VITISV_012454 [Vitis vinifera]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 233/290 (80%), Positives = 257/290 (88%), Gaps = 1/290 (0%)

Query: 2   ATLGCQFHCRMHHISQNVKAKRFISCSTN-PPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           A L  QFH   +   +NVK K+ +SCS   P QSNIKV+INGA KEIGRAAV+AVTKARG
Sbjct: 3   AALSSQFHPTTYRSIKNVKTKQLVSCSMQQPSQSNIKVVINGAAKEIGRAAVVAVTKARG 62

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIGMVC ME+ LE+P+++DLTMVLGSISQSKA  VV+DFTD STVY
Sbjct: 63  MEVAGAVDSHLVGEDIGMVCGMEEALEMPIINDLTMVLGSISQSKATGVVVDFTDPSTVY 122

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS 180
           +NVKQATAFGM SVVYVP I+L+TV+ALSAFC+KASMGCL+APTLSIGSILLQQAAISAS
Sbjct: 123 ENVKQATAFGMNSVVYVPRIKLDTVTALSAFCEKASMGCLVAPTLSIGSILLQQAAISAS 182

Query: 181 FHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRV 240
           FHY NVEIVESRP   DFPSPDA QIANNLSNLGQIYNREDISTD+ ARGQVLGEDG+RV
Sbjct: 183 FHYNNVEIVESRPTPTDFPSPDAIQIANNLSNLGQIYNREDISTDILARGQVLGEDGIRV 242

Query: 241 HSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLK 290
           HS+VLPGLPSSTTVYFS PGEVYS+KHDITDV+ LMPGLILAIRKVV LK
Sbjct: 243 HSLVLPGLPSSTTVYFSGPGEVYSLKHDITDVRCLMPGLILAIRKVVRLK 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741105|emb|CBI31836.3| unnamed protein product [Vitis vinifera]

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/291 (80%), Positives = 257/291 (88%), Gaps = 2/291 (0%)

Query: 2   ATLGCQFHCRMHHISQNVKAKRFISCSTN-PPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           A L  QFH   +   +NVK K+ +SCS   P QSNIKV+INGA KEIGRAAV+AVTKARG
Sbjct: 3   AALSSQFHPTTYRSIKNVKTKQLVSCSMQQPSQSNIKVVINGAAKEIGRAAVVAVTKARG 62

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQ-SKARAVVIDFTDASTV 119
           MEVAGA+DSH VGEDIGMVC ME+ LE+P+++DLTMVLGSISQ SKA  VV+DFTD STV
Sbjct: 63  MEVAGAVDSHLVGEDIGMVCGMEEALEMPIINDLTMVLGSISQQSKATGVVVDFTDPSTV 122

Query: 120 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA 179
           Y+NVKQATAFGM SVVYVP I+L+TV+ALSAFC+KASMGCL+APTLSIGSILLQQAAISA
Sbjct: 123 YENVKQATAFGMNSVVYVPRIKLDTVTALSAFCEKASMGCLVAPTLSIGSILLQQAAISA 182

Query: 180 SFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVR 239
           SFHY NVEIVESRP   DFPSPDA QIANNLSNLGQIYNREDISTD+ ARGQVLGEDG+R
Sbjct: 183 SFHYNNVEIVESRPTPTDFPSPDAIQIANNLSNLGQIYNREDISTDILARGQVLGEDGIR 242

Query: 240 VHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLK 290
           VHS+VLPGLPSSTTVYFS PGEVYS+KHDITDV+ LMPGLILAIRKVV LK
Sbjct: 243 VHSLVLPGLPSSTTVYFSGPGEVYSLKHDITDVRCLMPGLILAIRKVVRLK 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539549|ref|XP_002510839.1| dihydrodipicolinate reductase, putative [Ricinus communis] gi|223549954|gb|EEF51441.1| dihydrodipicolinate reductase, putative [Ricinus communis]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/290 (77%), Positives = 253/290 (87%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MA L C     +     NVKAK FI CS  P +SNIKV++NGA KEIGRAAVIAVTKARG
Sbjct: 1   MAALSCHLQFTVSKGCSNVKAKPFIFCSAQPAKSNIKVVVNGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+D+H VGED+G++CDME+PLEIPV++DLTMVLGSISQSK   VVIDFTD STVY
Sbjct: 61  MEVAGAVDTHFVGEDVGLLCDMEEPLEIPVINDLTMVLGSISQSKETGVVIDFTDPSTVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS 180
           DNVKQATAFGM+S+VYVP I+++T++ALSA C+KASMGCL+APTLSIGSILLQQAAISAS
Sbjct: 121 DNVKQATAFGMKSIVYVPRIKVDTIAALSALCEKASMGCLVAPTLSIGSILLQQAAISAS 180

Query: 181 FHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRV 240
           FHY NVEIVESR +  D PS DA QIA NLSNLGQIYN+ED+STDV ARGQVLGEDGVRV
Sbjct: 181 FHYNNVEIVESRAHGADLPSADANQIAKNLSNLGQIYNKEDLSTDVLARGQVLGEDGVRV 240

Query: 241 HSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLK 290
           HS+VLPGLPSSTTVYFS+PGEVYSIKHDITDVQ LM GL+LAIRKV+ LK
Sbjct: 241 HSLVLPGLPSSTTVYFSKPGEVYSIKHDITDVQCLMSGLLLAIRKVIRLK 290

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446063|ref|XP_004140791.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic-like [Cucumis sativus]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/290 (77%), Positives = 253/290 (87%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MATLGCQF   ++  S+  +    I CS  P Q NIKVIINGA KEIGRAAVIAVTKARG
Sbjct: 1   MATLGCQFPFTVYKNSKKKRPGSSILCSVQPSQGNIKVIINGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIG VCDME+PLE+P+++DLTMVLGSISQSK   VV+DFT+ S VY
Sbjct: 61  MEVAGAVDSHCVGEDIGKVCDMEEPLELPILNDLTMVLGSISQSKETGVVVDFTEPSKVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS 180
           +NVKQATAFGMRSVVYVP ++++TV+ALS FC+KASMGCL+APTLSIGSILLQQAAISAS
Sbjct: 121 ENVKQATAFGMRSVVYVPRLKVDTVAALSNFCEKASMGCLVAPTLSIGSILLQQAAISAS 180

Query: 181 FHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRV 240
           FHY N+EIVES  +A+D PS DA QIANNLSNLGQIYNREDISTDV ARGQV+GEDGVRV
Sbjct: 181 FHYSNIEIVESTAHAQDLPSSDAAQIANNLSNLGQIYNREDISTDVLARGQVIGEDGVRV 240

Query: 241 HSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLK 290
           HS+VLPGLPSST VYFSRPGEVY++KHDI +VQ LMPGL+LAIRKVV LK
Sbjct: 241 HSLVLPGLPSSTNVYFSRPGEVYTLKHDIINVQCLMPGLLLAIRKVVRLK 290

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575925|ref|XP_003556086.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic-like [Glycine max]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/292 (78%), Positives = 256/292 (87%), Gaps = 3/292 (1%)

Query: 1   MATLGCQFHCRMHHISQNV--KAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA+L CQFH      S+NV  + KRFI CS  P Q+NIKV+INGA KEIGRAAV+AVTKA
Sbjct: 1   MASLSCQFHSTSLLNSKNVNRRRKRFIFCSAQPTQNNIKVVINGATKEIGRAAVVAVTKA 60

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGMEVAGA+D+  VGEDIG +C ME+PLEIP+++DLTM+LGSISQSKA  VV+DFTD S+
Sbjct: 61  RGMEVAGAVDTCHVGEDIGKICGMEEPLEIPIINDLTMILGSISQSKAAGVVVDFTDPSS 120

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VYDNVKQATAFGM+SVVYVP I+L+TV+ALSAFCDKASMG L+APTLSIGSILLQQAAIS
Sbjct: 121 VYDNVKQATAFGMKSVVYVPQIKLDTVAALSAFCDKASMGVLVAPTLSIGSILLQQAAIS 180

Query: 179 ASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGV 238
           ASFHY NVEIVESR NA D PS DA QIANNLSNLGQIYNRED STDV ARGQVLG DG+
Sbjct: 181 ASFHYSNVEIVESRANANDLPSADANQIANNLSNLGQIYNREDPSTDVLARGQVLG-DGI 239

Query: 239 RVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLK 290
           RVHSMVLPG+PSSTTV+FS PGEVYSIKHDITDV+ LMPGL+LAIRKVV LK
Sbjct: 240 RVHSMVLPGIPSSTTVHFSGPGEVYSIKHDITDVKCLMPGLLLAIRKVVRLK 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444055|ref|XP_003592305.1| Dihydrodipicolinate reductase [Medicago truncatula] gi|355481353|gb|AES62556.1| Dihydrodipicolinate reductase [Medicago truncatula]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/293 (77%), Positives = 255/293 (87%), Gaps = 4/293 (1%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR---FISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTK 57
           MA L CQFH   +  SQ VK++     ISCS  P QSNIKV+INGA KEIGRAAV+AVTK
Sbjct: 1   MAALSCQFHSINYLNSQMVKSRSKHSIISCSAQPIQSNIKVVINGAAKEIGRAAVLAVTK 60

Query: 58  ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS 117
           ARGMEVAGAID+  VGEDIG +C M++PLEIP+++DLTMVLGSISQSKA AVV+DFTD S
Sbjct: 61  ARGMEVAGAIDTQHVGEDIGQLCGMDEPLEIPILNDLTMVLGSISQSKATAVVVDFTDPS 120

Query: 118 TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI 177
            VYDNVKQATAFGM+SVVYVP I+L+TV+ALSAFC+KASMG L+APTLSIGSILLQQAAI
Sbjct: 121 AVYDNVKQATAFGMKSVVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAI 180

Query: 178 SASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDG 237
           SASFHY+NVEIVES+ NA D PS +A QIANNLSNLGQIYNRED STDV ARGQVLG DG
Sbjct: 181 SASFHYRNVEIVESKANANDLPSAEANQIANNLSNLGQIYNREDSSTDVLARGQVLG-DG 239

Query: 238 VRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLK 290
           +RVHS+VLPGLPSSTTV+FS  GE+Y+IKHDITDVQ LMPGL+LAIRKVV LK
Sbjct: 240 IRVHSLVLPGLPSSTTVHFSGLGEIYTIKHDITDVQCLMPGLLLAIRKVVRLK 292

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792539|ref|XP_002864154.1| dihydrodipicolinate reductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297309989|gb|EFH40413.1| dihydrodipicolinate reductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/292 (77%), Positives = 254/292 (86%), Gaps = 6/292 (2%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR-FISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA + C F      +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAVIAVTKA
Sbjct: 1   MAAVNCHFF----KLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVIAVTKA 56

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGME+AGA+D+  VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD ST
Sbjct: 57  RGMELAGAVDNRFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDLST 116

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VY+NVKQATAFGM+SVVYVP I+ ETVSALSA CDKA+MGCL+APTLSIGSILLQQA I 
Sbjct: 117 VYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIM 176

Query: 179 ASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGV 238
           ASFHY NVE+VESRPNA DFPSP+A QIANN+SNLGQIYNRED STDVKARGQV+GEDGV
Sbjct: 177 ASFHYNNVELVESRPNAADFPSPEAIQIANNISNLGQIYNREDSSTDVKARGQVIGEDGV 236

Query: 239 RVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLK 290
           RVHSMVLPGLPSST VYFS PG+VY++KHDI DV+SLMPGL+LAIRKVV LK
Sbjct: 237 RVHSMVLPGLPSSTQVYFSSPGDVYTLKHDIIDVRSLMPGLLLAIRKVVRLK 288

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535900|ref|XP_003536480.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic-like [Glycine max]

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/292 (76%), Positives = 254/292 (86%), Gaps = 3/292 (1%)

Query: 1   MATLGCQFHCR--MHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA+L CQ H    ++  + N + KR ISCS  P Q+NIKV+INGA KEIG+AAV+AVTKA
Sbjct: 1   MASLSCQVHSTNLLNSKNANSRRKRLISCSAQPTQNNIKVVINGATKEIGKAAVVAVTKA 60

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGMEVAGA+D+  +GEDIG +C ME+ LEIP+++DLTM+LGSISQSKA  VV+DFTD S+
Sbjct: 61  RGMEVAGAVDTCHIGEDIGKICGMEELLEIPIINDLTMILGSISQSKAAGVVVDFTDPSS 120

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VYDNVKQATAFGM+S+VYVP I+L+TV+ALSAFC+KASMG L+APTLSIGSILLQQAAIS
Sbjct: 121 VYDNVKQATAFGMKSIVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAIS 180

Query: 179 ASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGV 238
           ASFHY NVEIVESR NA D PS DA QIANNLSNLGQIYNRED STDV ARGQVLG DG+
Sbjct: 181 ASFHYSNVEIVESRANANDLPSADANQIANNLSNLGQIYNREDPSTDVLARGQVLG-DGI 239

Query: 239 RVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLK 290
           RVHSMVLPGLPSSTTV+FS PGEVYSIKHDITDV+ LMPGL+LAIRKVV LK
Sbjct: 240 RVHSMVLPGLPSSTTVHFSGPGEVYSIKHDITDVKCLMPGLLLAIRKVVRLK 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242275|ref|NP_200023.1| putative dihydrodipicolinate reductase 3 [Arabidopsis thaliana] gi|75262543|sp|Q9FJ82.1|DAPB3_ARATH RecName: Full=Putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic; Short=HTPA reductase 3; Flags: Precursor gi|10177745|dbj|BAB11058.1| dihydrodipicolinate reductase-like protein [Arabidopsis thaliana] gi|124301156|gb|ABN04830.1| At5g52100 [Arabidopsis thaliana] gi|332008788|gb|AED96171.1| putative dihydrodipicolinate reductase 3 [Arabidopsis thaliana]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/292 (76%), Positives = 254/292 (86%), Gaps = 6/292 (2%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR-FISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA + C F      +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAV+AVTKA
Sbjct: 1   MAAVNCHFF----QLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKA 56

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGME+AGA+D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD ST
Sbjct: 57  RGMELAGAVDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPST 116

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VY+NVKQATAFGM+SVVYVP I+ ETVSALSA CDKA+MGCL+APTLSIGSILLQQA I 
Sbjct: 117 VYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIM 176

Query: 179 ASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGV 238
           ASFHY NVE+VESRPNA D PSP+A QIANN+SNLGQIYNRED STDV+ARGQV+GEDGV
Sbjct: 177 ASFHYNNVELVESRPNAADLPSPEAIQIANNISNLGQIYNREDSSTDVQARGQVIGEDGV 236

Query: 239 RVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLK 290
           RVHSMVLPGLPSST VYFS PG+VY++KHDI DV+SLMPGL+LAIRKVV LK
Sbjct: 237 RVHSMVLPGLPSSTQVYFSSPGDVYTVKHDIIDVRSLMPGLLLAIRKVVRLK 288

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
TAIR|locus:2173043	298	CRR1 "chlororespiration reduct	0.930	0.946	0.778	4.5e-114
TIGR_CMR|CBU_1709	239	CBU_1709 "dihydrodipicolinate	0.653	0.828	0.322	5.1e-26
TIGR_CMR|DET_0971	263	DET_0971 "dihydrodipicolinate	0.808	0.931	0.282	7.8e-23
TIGR_CMR|CHY_1151	263	CHY_1151 "dihydrodipicolinate	0.811	0.935	0.281	2.1e-22
UNIPROTKB|P63895	255	dapB "4-hydroxy-tetrahydrodipi	0.778	0.925	0.302	3.5e-20
TIGR_CMR|BA_1555	266	BA_1555 "dihydrodipicolinate r	0.828	0.943	0.269	7.2e-20
UNIPROTKB|P72024	245	dapB "4-hydroxy-tetrahydrodipi	0.580	0.718	0.316	1.8e-16
TIGR_CMR|GSU_0160	266	GSU_0160 "dihydrodipicolinate	0.778	0.887	0.247	1.2e-05
TAIR|locus:2051854	347	AT2G44040 [Arabidopsis thalian	0.719	0.628	0.252	1.3e-05
TAIR|locus:2080482	349	AT3G59890 [Arabidopsis thalian	0.712	0.618	0.229	0.00053

TAIR|locus:2173043 CRR1 "chlororespiration reduction 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
 Identities = 221/284 (77%), Positives = 251/284 (88%)

Query:     9 HCRMHHISQNVKAKR-FISCSTNPP-QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66
             +C    +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAV+AVTKARGME+AGA
Sbjct:     5 NCHFFQLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKARGMELAGA 64

Query:    67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQA 126
             +D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD STVY+NVKQA
Sbjct:    65 VDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPSTVYENVKQA 124

Query:   127 TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNV 186
             TAFGM+SVVYVP I+ ETVSALSA CDKA+MGCL+APTLSIGSILLQQA I ASFHY NV
Sbjct:   125 TAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIMASFHYNNV 184

Query:   187 EIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLP 246
             E+VESRPNA D PSP+A QIANN+SNLGQIYNRED STDV+ARGQV+GEDGVRVHSMVLP
Sbjct:   185 ELVESRPNAADLPSPEAIQIANNISNLGQIYNREDSSTDVQARGQVIGEDGVRVHSMVLP 244

Query:   247 GLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLK 290
             GLPSST VYFS PG+VY++KHDI DV+SLMPGL+LAIRKVV LK
Sbjct:   245 GLPSSTQVYFSSPGDVYTVKHDIIDVRSLMPGLLLAIRKVVRLK 288

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=IEA;IGI;ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0070402 "NADPH binding" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019684 "photosynthesis, light reaction" evidence=IMP

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TIGR_CMR|CBU_1709 CBU_1709 "dihydrodipicolinate reductase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 268 (99.4 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
 Identities = 68/211 (32%), Positives = 113/211 (53%)

Query:    88 IPVMSDLTMVLGSISQSK-ARA-------VVIDFTDASTVYDNVKQATAFGMRSVVYVPH 139
             I   SDL +V G+  Q   A+        VVIDFT   +V+ N +     G R V+    
Sbjct:    22 ITAQSDLELVSGTGRQDDLAKTIQTTHADVVIDFTTPQSVFHNAEIIIQSGARPVIGTTG 81

Query:   140 IQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DF 198
             + LE ++ L   C    +G ++AP  S+G++L+ + A  A+ ++ +VEI+E   + + D 
Sbjct:    82 LTLEQIALLDKQCRNKKLGAIVAPNFSVGAVLMMKYAKEAAHYFPDVEIIEMHHSQKIDA 141

Query:   199 PSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSR 258
             PS  A + A  +  +    +++D     +ARG++  ++G+ +HS+ LPGL S  +V F  
Sbjct:   142 PSGTAIKTAQMIGEMRS--SKKDEPFKDRARGEI--KNGIPIHSIRLPGLFSHQSVIFGS 197

Query:   259 PGEVYSIKHDITDVQSLMPGLILAIRKVVHL 289
              GE  +I+HD  D    MPG+ +A RKV+ L
Sbjct:   198 NGETLTIRHDGMDRNCTMPGIFMACRKVMEL 228

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

TIGR_CMR|DET_0971 DET_0971 "dihydrodipicolinate reductase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 73/258 (28%), Positives = 129/258 (50%)

Query:    36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
             IKV+++GA  ++G+  +  + +   +   GA+D  +    + +    +    IP  +DL+
Sbjct:     4 IKVVVHGASGKMGQEVLKTLCQENNLLPVGAVDIRAKSPALPLP---DGSGSIPYSADLS 60

Query:    96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA 155
              VL   SQ+K   V++DFT A      ++ A A  +  V+       E +S +       
Sbjct:    61 SVL---SQTKPD-VMVDFTIAKASMPAIRIAAAHKVNLVIGTTGFSPEEISEIEQLAKTN 116

Query:   156 SMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLSNL-- 213
              +G ++AP  ++G+I++   A  AS    + E++E   + +   SP  T +A   + L  
Sbjct:   117 DIGIIVAPNFALGAIIMVHLAQEASRFLASAEVIELHHDKK-LDSPSGTALATAAAMLKT 175

Query:   214 -GQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDV 272
              G+ +N+        ARGQ    DG+RVHS+ LPGL +   V F   G+  +I+HD    
Sbjct:   176 RGEAFNKPAKENMSDARGQE--HDGIRVHSVRLPGLLAHQEVIFGAAGQSLTIRHDAFSR 233

Query:   273 QSLMPGLILAIRKVVHLK 290
             +  MPG++LAI+++V  K
Sbjct:   234 ECYMPGVVLAIKEIVQTK 251

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

TIGR_CMR|CHY_1151 CHY_1151 "dihydrodipicolinate reductase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 72/256 (28%), Positives = 134/256 (52%)

Query:    37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM 96
             ++++ GA  ++GR     +      E+ G +D  +VG+D G +  + + L   V  +L  
Sbjct:     3 RIVMLGACGKMGREISKNLLMHSEHELVGFVDVVNVGQDFGEILGISR-LGKTVEDNLKE 61

Query:    97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS 156
             V+   +      +V+DF+ AS  + N+  A    +R V        E +  +    +  +
Sbjct:    62 VILKTNPE----IVLDFSRASGAFTNILIALENKVRVVSGTTGFSQEQIKKIEDVSNANN 117

Query:   157 MGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQ 215
             +GC+IAP  SIG++LL + A  A+ ++ +VEI+E   N + D PS  A + A  LS++ +
Sbjct:   118 LGCIIAPNFSIGALLLMKLAQMAAKYFSHVEIIEYHHNLKVDAPSGTAIKTAELLSSIRE 177

Query:   216 IYNRED-ISTDVKARGQVLGE-DGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQ 273
               N+   I  + K  G   G+  G+++HS+ LPGL +   V F   G+  +++HD+   +
Sbjct:   178 --NQPSAIQEEEKIPGSRGGDYRGIKIHSVRLPGLVAHQEVIFGGRGQSLTLRHDVYSRE 235

Query:   274 SLMPGLILAIRKVVHL 289
             S + G++ A++KV+ L
Sbjct:   236 SYLDGILFALKKVLEL 251

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

UNIPROTKB|P63895 dapB "4-hydroxy-tetrahydrodipicolinate reductase" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 78/258 (30%), Positives = 123/258 (47%)

Query:    35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSD 93
             +I+VII G   ++G+AA   V     +++   +D   S  E  G          IPV  D
Sbjct:     2 SIRVIIAGFKGKMGQAACQMVLTDPDLDLVAVLDPFESESEWQG----------IPVFKD 51

Query:    94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD 153
                + G  +      V +DFT  +  Y+N + A   G   VV       E ++ L  F  
Sbjct:    52 KADLAGFEAD-----VWVDFTTPAVAYENTRFALENGFAPVVGTTGFTSEEIAELKEFSR 106

Query:   154 KASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSN 212
                +G LIAP  ++G++LL Q A  A+ ++ NVEI+E      +D PS  A + A  ++ 
Sbjct:   107 AQDLGGLIAPNFALGAVLLMQFATQAAKYFPNVEIIELHHDKKKDAPSGTAIKTAELMAE 166

Query:   213 LGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDI 269
             + +   +   ++      ARG     DG+R+HS+ LPGL +   V F   GE  +++HD 
Sbjct:   167 VRESIQQGAADEEELIAGARGADF--DGMRIHSVRLPGLVAHQEVIFGNQGEGLTLRHDS 224

Query:   270 TDVQSLMPGLILAIRKVV 287
              D  S M G+ L I++VV
Sbjct:   225 YDRISFMTGVNLGIKEVV 242

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|BA_1555 BA_1555 "dihydrodipicolinate reductase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 72/267 (26%), Positives = 133/267 (49%)

Query:    36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
             +KVII G    +G  AV+ + +     +  A+D    GE I  +  M   L+  + +DL 
Sbjct:     4 MKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPA-LDATIYADLH 62

Query:    96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA 155
               L  +       V++D T       +V  A   G+RSV+       E +  L+    + 
Sbjct:    63 TCLEEVEAD----VLLDLTTPEVGKQHVTLAVERGLRSVIGTTGFTEEELKQLTETAKEK 118

Query:   156 SMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQ----IANNL 210
             ++G +IAP  +IG++L+ + +  A+ ++++VE++E   + + D PS  A +    I  N 
Sbjct:   119 AVGTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIELHHDQKLDAPSGTAVKTVELIRQNR 178

Query:   211 SNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDIT 270
              +  Q +  E +     ARG  +  DG+ +HS+ LPGL +   V F   G++ +++HD  
Sbjct:   179 ESKQQGHPNE-VEQLEGARGANV--DGIHIHSVRLPGLIAHQEVMFGGDGQMLTVRHDSF 235

Query:   271 DVQSLMPGLILAIRKVVHLKVTNHIIF 297
             +  S M G+ L+I  V++L   +H+++
Sbjct:   236 NRASFMSGVKLSIETVMNL---DHLVY 259

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

UNIPROTKB|P72024 dapB "4-hydroxy-tetrahydrodipicolinate reductase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 58/183 (31%), Positives = 93/183 (50%)

Query:   109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC-DKASMGCLIAPTLSI 167
             VVIDFT    V  N++     G+ +VV       E    + ++   K +   LIAP  +I
Sbjct:    48 VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 107

Query:   168 GSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNL--GQIYNREDIST 224
             G++L    A  A+  + + E++E   P+  D PS  A + A  ++    G   N +  ST
Sbjct:   108 GAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATST 167

Query:   225 DVK-ARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAI 283
              +  ARG  +  DG+ VH++ L GL +   V F   GE  +I+HD  D  S +PG++LA+
Sbjct:   168 SLPGARGADV--DGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAV 225

Query:   284 RKV 286
             R++
Sbjct:   226 RRI 228

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=IDA

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IDA

GO:0019877 "diaminopimelate biosynthetic process" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IPI

GO:0051289 "protein homotetramerization" evidence=IPI

GO:0070402 "NADPH binding" evidence=IDA

GO:0070404 "NADH binding" evidence=IDA

TIGR_CMR|GSU_0160 GSU_0160 "dihydrodipicolinate reductase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 126 (49.4 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 65/263 (24%), Positives = 119/263 (45%)

Query:    37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID--SHS-VGEDIGMVCDMEQPLEIPVMSD 93
             K+ + GA   +G+  ++A  +A G  ++GA++   H  VG+D G++      L + +  D
Sbjct:     3 KIAVCGAAGRMGQRIIVAAREA-GCTISGALERPGHEMVGQDAGLIAGCGA-LGVAISDD 60

Query:    94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD 153
             L  V+          V+IDFT       N+ +  A   +S+V           AL+    
Sbjct:    61 LNAVVEGCD------VLIDFTTPKVSLKNL-EVCALKKKSIVIGSTGFTPEERALAVELA 113

Query:   154 KASMGCLIAPTLSIG-SI---LLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIAN 208
             +  +  ++AP +S+G ++   +L+  A +    + +VEIVE   N + D PS  A ++  
Sbjct:   114 R-EIPAVLAPNMSVGVNVCFKILKDVAKTLGDDF-DVEIVELHHNKKKDAPSGTAVRMGE 171

Query:   209 NLSN-LGQIYNREDISTDVKARGQVLGE---DGVRVHSMVLPGLPSSTTVYFSRPGEVYS 264
              ++  LG+ YN+  ++T    R  + GE   + + + ++    +    TVYF   GE   
Sbjct:   172 VVAEALGRDYNK--VAT--YHREGICGERTKEEIGMQTVRGGDIVGEHTVYFIGMGERIE 227

Query:   265 IKHDITDVQSLMPGLILAIRKVV 287
             I H          G + A + VV
Sbjct:   228 ISHRAMTRDMFSRGSVRAAQWVV 250

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

TAIR|locus:2051854 AT2G44040 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 60/238 (25%), Positives = 107/238 (44%)

Query:    32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGM---VCDMEQPLEI 88
             P + I +++NG   ++G+A + A   A G+ +   I   S GED G    VC  E  +  
Sbjct:    69 PGNGISIMVNGCSGKMGKAVIKAADSA-GVNIV-PISFGSAGED-GQRVEVCGKEITVHG 125

Query:    89 PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP---HIQL-ET 144
             P  ++   VL S+ +     +V+D+T  S V DN +  +  G+  V+        +L ET
Sbjct:   126 P--TEREKVLSSVFEKHPELIVVDYTIPSAVNDNAELYSKVGVPFVMGTTGGDRNKLYET 183

Query:   145 VSALSAFCD-KASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDA 203
             V     +      MG  +   L+   I+ +Q     +F   +++++ES   ++   S  A
Sbjct:   184 VEEAKIYAVISPQMGKQVVAFLAAMEIMAEQ--FPGAFSGYSLDVMESHQASKLDASGTA 241

Query:   204 TQIANNLSNLGQIYNREDIST--DVKARGQVLG--EDGVRVHSMVLPGLPS-STTVYF 256
               + +    LG  Y+ + I    D K + +++G  E+ +  H+  L  L S   TV F
Sbjct:   242 KAVISCFQELGVSYDMDQIQLIRDPKQQVEMVGVPEEHISGHAFHLYHLTSPDETVSF 299

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=IEA;IGI;ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0070402 "NADPH binding" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2080482 AT3G59890 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 0.00053, P = 0.00053
 Identities = 55/240 (22%), Positives = 108/240 (45%)

Query:    32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVA----GAIDSHSVGEDIGMVCDMEQPLE 87
             P + I +++NG   ++G+A + A   A G+ +     G+++    G+ +  VC  E  + 
Sbjct:    71 PGNGISIMVNGCSGKMGKAVIKAADSA-GVNIVPTSFGSVEE--AGQTVE-VCGKEILVH 126

Query:    88 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSA 147
              P  ++   VL S+ +     +V+D+T  S V DN   A  +G   V +V        + 
Sbjct:   127 GP--TEREKVLSSVFEKYPELIVVDYTIPSAVNDN---AELYGKVGVPFVMGTTGGDRTR 181

Query:   148 LSAFCDKASMGCLIAPTLS------IGSILLQQAAISASFHYKNVEIVESRPNARDFPSP 201
             L    +++ +  +I+P +       + ++ +       +F   ++E++ES   ++   S 
Sbjct:   182 LYKTVEESKIYAVISPQMGKQVVAFLAAMEIMSEQFPGAFAGYSLEVMESHQASKLDASG 241

Query:   202 DATQIANNLSNLGQIYNREDIST--DVKARGQVLG--EDGVRVHSMVLPGLPS-STTVYF 256
              A  + +    LG  Y+ + I    D K + +V+G  E+ V  H+  L  L S   TV F
Sbjct:   242 TAKAVISCFQKLGVSYDMDQIQLIRDPKQQIEVVGVPEEHVSGHAFHLYHLTSPDKTVSF 301

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=IEA;IGI;ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0070402 "NADPH binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2RJL2	DAPB_MOOTA	1, ., 3, ., 1, ., 2, 6	0.3041	0.8151	0.9250	yes	no
Q7VC38	DAPB_PROMA	1, ., 3, ., 1, ., 2, 6	0.3446	0.8382	0.9202	yes	no
Q7U807	DAPB_SYNPX	1, ., 3, ., 1, ., 2, 6	0.3471	0.8415	0.9205	yes	no
Q3MFY8	DAPB_ANAVT	1, ., 3, ., 1, ., 2, 6	0.4172	0.8481	0.9244	yes	no
Q5N0M4	DAPB_SYNP6	1, ., 3, ., 1, ., 2, 6	0.4076	0.8316	0.9230	yes	no
B7JW41	DAPB_CYAP8	1, ., 3, ., 1, ., 2, 6	0.4068	0.8415	0.9272	yes	no
Q31LA3	DAPB_SYNE7	1, ., 3, ., 1, ., 2, 6	0.4076	0.8316	0.9230	yes	no
B7KBV6	DAPB_CYAP7	1, ., 3, ., 1, ., 2, 6	0.4144	0.8481	0.9345	yes	no
Q8YU19	DAPB_NOSS1	1, ., 3, ., 1, ., 2, 6	0.4210	0.8481	0.9244	yes	no
B2J0A9	DAPB_NOSP7	1, ., 3, ., 1, ., 2, 6	0.4119	0.8448	0.9208	yes	no
B1XIL4	DAPB_SYNP2	1, ., 3, ., 1, ., 2, 6	0.3893	0.8382	0.9236	yes	no
Q3AIK8	DAPB_SYNSC	1, ., 3, ., 1, ., 2, 6	0.3422	0.8349	0.9133	yes	no
Q8DHH2	DAPB_THEEB	1, ., 3, ., 1, ., 2, 6	0.4007	0.8547	0.9384	yes	no
Q46KV7	DAPB_PROMT	1, ., 3, ., 1, ., 2, 6	0.3193	0.8283	0.8900	yes	no
Q9FJ82	DAPB3_ARATH	1, ., 3, ., 1, ., 2, 6	0.7671	0.9438	0.9597	yes	no
B5YEB2	DAPB_DICT6	1, ., 3, ., 1, ., 2, 6	0.3139	0.8019	0.9067	yes	no
A5GSL5	DAPB_SYNR3	1, ., 3, ., 1, ., 2, 6	0.3423	0.8382	0.9304	yes	no
Q10YI1	DAPB_TRIEI	1, ., 3, ., 1, ., 2, 6	0.4296	0.8415	0.9272	yes	no
Q7NLC0	DAPB_GLOVI	1, ., 3, ., 1, ., 2, 6	0.3783	0.8349	0.9405	yes	no
B8HRK9	DAPB_CYAP4	1, ., 3, ., 1, ., 2, 6	0.4431	0.8448	0.9309	yes	no
Q7V1N1	DAPB_PROMP	1, ., 3, ., 1, ., 2, 6	0.3410	0.8184	0.8794	yes	no
Q3AYN5	DAPB_SYNS9	1, ., 3, ., 1, ., 2, 6	0.3345	0.8448	0.9241	yes	no
B0CE31	DAPB_ACAM1	1, ., 3, ., 1, ., 2, 6	0.3782	0.8283	0.9127	yes	no
Q7V7D4	DAPB_PROMM	1, ., 3, ., 1, ., 2, 6	0.3429	0.8481	0.9081	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.1	0.766
3rd Layer	1.3.1.26	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XV0419	hypothetical protein (301 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0035005702	dihydrodipicolinate synthase (EC-4.2.1.52) (363 aa)	•					•	•		0.977
	estExt_fgenesh4_pg.C_LG_II1351	dihydrodipicolinate synthase (EC-4.2.1.52) (366 aa)	•					•	•		0.971
	gw1.IX.2730.1	SubName- Full=Putative uncharacterized protein; (406 aa)						•	•		0.907
	estExt_Genewise1_v1.C_LG_II0973	hypothetical protein (397 aa)						•	•		0.906
	fgenesh4_pm.C_scaffold_57000049	hypothetical protein (397 aa)						•	•		0.905
	fgenesh4_pg.C_LG_VII001193	hypothetical protein (397 aa)						•	•		0.904
	gw1.9962.1.1	hypothetical protein (394 aa)						•	•		0.904
	estExt_Genewise1_v1.C_1700073	dihydrodipicolinate reductase (EC-1.3.1.26) (283 aa)						•	•		0.850
	gw1.XVI.3802.1	diaminopimelate epimerase (EC-5.1.1.7) (281 aa)							•		0.571
	eugene3.00090483	diaminopimelate decarboxylase (EC-4.1.1.20) (482 aa)	•						•		0.523

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	303
TIGR00036	266	TIGR00036, dapB, dihydrodipicolinate reductase	7e-36
PRK00048	257	PRK00048, PRK00048, dihydrodipicolinate reductase;	1e-28
COG0289	266	COG0289, DapB, Dihydrodipicolinate reductase [Amin	2e-27
pfam05173	137	pfam05173, DapB_C, Dihydrodipicolinate reductase,	7e-12
pfam01113	122	pfam01113, DapB_N, Dihydrodipicolinate reductase,	6e-11
TIGR02130	275	TIGR02130, dapB_plant, dihydrodipicolinate reducta	2e-04

>gnl|CDD|129147 TIGR00036, dapB, dihydrodipicolinate reductase

 Score =  129 bits (326), Expect = 7e-36
 Identities = 66/269 (24%), Positives = 111/269 (41%), Gaps = 27/269 (10%)

Query: 35  NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVM 91
            IKV + GA   +GR  + A   A G+++  A + H     G D G +  +   + +PV 
Sbjct: 1   TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGI-GKVGVPVT 59

Query: 92  SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF 151
            DL       +      V+IDFT    V +++K A   G+R VV       E    L+  
Sbjct: 60  DDLE------AVETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADL 113

Query: 152 CDKASMGCLIAPTLSIGSILLQQAAISASFHYKNV--EIVESRPN-ARDFPSPDATQIAN 208
            +KA +  +IAP  SIG  L+ +    A+ +  +   EI+E      +D PS  A + A 
Sbjct: 114 AEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGDYDIEIIELHHRHKKDAPSGTALKTAE 173

Query: 209 NLS-------NLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGE 261
            ++           +  RE ++     RG     + + +H++    +    TV F+  GE
Sbjct: 174 MIAEARGERLKNVAVTEREGLT---GERG----REEIGIHAVRGGDVVGEHTVMFAGDGE 226

Query: 262 VYSIKHDITDVQSLMPGLILAIRKVVHLK 290
              I H  +       G + A R +   +
Sbjct: 227 RLEITHRASSRACFANGAVRAARWLADKE 255

[Amino acid biosynthesis, Aspartate family]. Length = 266

>gnl|CDD|234595 PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional

 Score =  109 bits (276), Expect = 1e-28
 Identities = 67/263 (25%), Positives = 106/263 (40%), Gaps = 27/263 (10%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
           IKV + GA   +GR  + AV  A  +E+  A+D                   + +  DL 
Sbjct: 2   IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALG------VAITDDLE 55

Query: 96  MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVSALSAF 151
            VL          V+IDFT      +N++ A   G   V+    +    QL  +      
Sbjct: 56  AVLADAD------VLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEE-QLAELEEA--- 105

Query: 152 CDKASMGCLIAPTLSIGSILLQQAAISAS--FHYKNVEIVESR-PNARDFPSPDATQIAN 208
                +  +IAP  SIG  LL + A  A+      ++EI+E+   +  D PS  A ++A 
Sbjct: 106 --AKKIPVVIAPNFSIGVNLLMKLAEKAAKYLGDYDIEIIEAHHRHKVDAPSGTALKLAE 163

Query: 209 NLSN-LGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKH 267
            ++   G+      +     A G    +  + +HS+    +     V F+  GE   I+H
Sbjct: 164 AIAEARGRDLKEVAVYGREGATGAR-VKGEIGIHSVRGGDIVGEHEVIFAGDGERIEIRH 222

Query: 268 DITDVQSLMPGLILAIRKVVHLK 290
           D T   S  PG +LA R +V  K
Sbjct: 223 DATSRMSFAPGALLAARWLVGKK 245

Length = 257

>gnl|CDD|223366 COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]

 Score =  106 bits (268), Expect = 2e-27
 Identities = 70/260 (26%), Positives = 115/260 (44%), Gaps = 15/260 (5%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
           S IKV + GA   +GR  + AV +A  +E+  A D   S S+G D G +  +   L +PV
Sbjct: 1   SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG-LLGVPV 59

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
             DL +V           V+IDFT      +N++ A   G   V+       E +  L  
Sbjct: 60  TDDLLLVK------ADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLRE 113

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISAS--FHYKNVEIVESR-PNARDFPSPDATQIA 207
             +K  +  +IAP  S+G  LL + A  A+      ++EI+E+   + +D PS  A ++A
Sbjct: 114 AAEK--VPVVIAPNFSLGVNLLFKLAEQAAKVLDDYDIEIIEAHHRHKKDAPSGTALKLA 171

Query: 208 NNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKH 267
             ++       +++     +       E  + +HS+    +     V F+  GE   I+H
Sbjct: 172 EAIAEARGQDLKDEAVYGREGATGARKEGEIGIHSVRGGDIVGEHEVIFAGEGERIEIRH 231

Query: 268 DITDVQSLMPGLILAIRKVV 287
             T   S   G +LA R +V
Sbjct: 232 RATSRDSFARGALLAARWLV 251

Length = 266

>gnl|CDD|218479 pfam05173, DapB_C, Dihydrodipicolinate reductase, C-terminus

 Score = 61.7 bits (151), Expect = 7e-12
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 171 LLQQAAISASFHYKNVEIVES-RPNARDFPSPDATQIANNLS-NLGQIYNREDISTDVKA 228
           L ++AA        ++EI+E      +D PS  A ++A  ++   G+         +   
Sbjct: 8   LAEEAA-KYLGDDYDIEIIEIHHRQKKDAPSGTALKLAEAIAEARGEALEVVADEREGGT 66

Query: 229 RGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVH 288
           RG+    + + +HS+   G+     V F   GE   I HD    +   PG +LA   +  
Sbjct: 67  RGRS--VNEIGIHSVRGGGVVGEHEVIFGGDGERIEITHDAHSREIFAPGALLAAEWLAG 124

Query: 289 LK 290
            K
Sbjct: 125 KK 126

Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The C-terminal domain of DapB has been proposed to be the substrate- binding domain. Length = 137

>gnl|CDD|216304 pfam01113, DapB_N, Dihydrodipicolinate reductase, N-terminus

 Score = 58.8 bits (143), Expect = 6e-11
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 22/135 (16%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPVMS 92
           IKV + GA   +GR  + A+ +A   E+  A+D   S  +G D G +        +PV  
Sbjct: 1   IKVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGELAGPL---GVPVTD 57

Query: 93  DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVSAL 148
           DL  VL          V+IDFT      +N++ A   G   V+    +    QL  +   
Sbjct: 58  DLEEVLADAD------VLIDFTTPEATLENLELALKHGKPLVIGTTGFTEE-QLAELKEA 110

Query: 149 SAFCDKASMGCLIAP 163
           +       +  +IAP
Sbjct: 111 A-----KKIPIVIAP 120

Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH. Length = 122

>gnl|CDD|131185 TIGR02130, dapB_plant, dihydrodipicolinate reductase

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 20/234 (8%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL 94
           I++++NG   ++G+A V     A G+E V  +       E+   V   E  L  P  S+ 
Sbjct: 1   IQIMVNGCPGKMGKA-VAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGP--SER 57

Query: 95  TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK 154
              +G +       + ID+T  S V DN   A  +G   + +V         AL+     
Sbjct: 58  EARIGEVFAKYPELICIDYTHPSAVNDN---AAFYGKHGIPFVMGTTGGDREALAKLVAD 114

Query: 155 ASMGCLIAPTLSIGSILLQQAAIS-------ASFHYKNVEIVESRPNARDFPSPDATQIA 207
           A    +IAP ++   I+   AAI         +F    +E++ES   ++   S  A  + 
Sbjct: 115 AKHPAVIAPNMA-KQIVAFLAAIEFLAEEFPGAFAGYKLEVMESHQASKADASGTAKAVI 173

Query: 208 NNLSNLGQIYNREDIST--DVKARGQVLG--EDGVRVHSMVLPGLPSST-TVYF 256
                LG  Y+ +DI    D K + + +G  E+ +  H+  L  L S+  TV+F
Sbjct: 174 GCFQKLGFDYDMDDIEKIRDEKEQIERMGVPEEHLGGHAFHLYHLDSADGTVHF 227

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome [Amino acid biosynthesis, Aspartate family]. Length = 275

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	303
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	100.0
TIGR00036	266	dapB dihydrodipicolinate reductase.	100.0
PRK00048	257	dihydrodipicolinate reductase; Provisional	100.0
PLN02775	286	Probable dihydrodipicolinate reductase	100.0
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	100.0
PF05173	132	DapB_C: Dihydrodipicolinate reductase, C-terminus;	100.0
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	99.97
PRK13303	265	L-aspartate dehydrogenase; Provisional	99.72
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	99.68
PRK13304	265	L-aspartate dehydrogenase; Reviewed	99.65
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	99.57
PRK11579	346	putative oxidoreductase; Provisional	99.56
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	99.56
COG0673	342	MviM Predicted dehydrogenases and related proteins	99.55
PRK10206	344	putative oxidoreductase; Provisional	99.49
PRK08374	336	homoserine dehydrogenase; Provisional	99.43
PRK06270	341	homoserine dehydrogenase; Provisional	99.41
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	99.38
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	99.35
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	99.34
PRK06349	426	homoserine dehydrogenase; Provisional	99.29
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	99.25
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	99.23
TIGR03855	229	NAD_NadX aspartate dehydrogenase. Members of this	99.23
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	99.14
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	99.1
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	99.07
PRK08300	302	acetaldehyde dehydrogenase; Validated	98.97
PRK06392	326	homoserine dehydrogenase; Provisional	98.93
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	98.92
COG3804	350	Uncharacterized conserved protein related to dihyd	98.92
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	98.76
PRK06813	346	homoserine dehydrogenase; Validated	98.73
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	98.72
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.7
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	98.66
PLN00125	300	Succinyl-CoA ligase [GDP-forming] subunit alpha	98.64
COG0074	293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	98.61
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	98.59
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	98.58
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	98.57
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.5
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	98.46
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	98.4
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	98.38
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.38
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	98.3
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.28
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.28
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	98.25
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	98.24
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	98.24
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	98.21
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	98.2
PLN02700	377	homoserine dehydrogenase family protein	98.2
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	98.16
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	98.11
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	98.09
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.04
KOG1255	329	consensus Succinyl-CoA synthetase, alpha subunit [	98.03
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	98.01
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	98.01
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.0
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.0
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	97.97
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.97
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.96
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.94
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.92
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	97.87
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.85
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.85
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	97.84
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.83
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.83
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.82
PLN02688	266	pyrroline-5-carboxylate reductase	97.79
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.76
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	97.76
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	97.76
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	97.76
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.75
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	97.74
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	97.73
PRK07680	273	late competence protein ComER; Validated	97.7
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.7
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.69
TIGR03450	351	mycothiol_INO1 inositol 1-phosphate synthase, Acti	97.67
PLN02383	344	aspartate semialdehyde dehydrogenase	97.67
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.67
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	97.66
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.66
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.64
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.63
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.63
COG2344	211	AT-rich DNA-binding protein [General function pred	97.63
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.62
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	97.62
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	97.61
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.59
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.56
PLN02712	667	arogenate dehydrogenase	97.55
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.54
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	97.54
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	97.54
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.52
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	97.45
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	97.44
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	97.44
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.43
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	97.37
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	97.36
PLN02256	304	arogenate dehydrogenase	97.32
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	97.3
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.24
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	97.23
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.23
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.22
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	97.21
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	97.2
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.16
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.16
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.13
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	97.12
PLN02712	667	arogenate dehydrogenase	97.1
PRK08655	437	prephenate dehydrogenase; Provisional	97.05
COG4693	361	PchG Oxidoreductase (NAD-binding), involved in sid	97.02
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.01
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	96.99
PRK07417	279	arogenate dehydrogenase; Reviewed	96.99
PRK08223	287	hypothetical protein; Validated	96.97
COG2910	211	Putative NADH-flavin reductase [General function p	96.95
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.94
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.87
PLN02522	608	ATP citrate (pro-S)-lyase	96.84
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.81
PRK08507	275	prephenate dehydrogenase; Validated	96.81
PRK08618	325	ornithine cyclodeaminase; Validated	96.79
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	96.74
CHL00194	317	ycf39 Ycf39; Provisional	96.74
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.71
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.71
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.7
PLN02858	1378	fructose-bisphosphate aldolase	96.7
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.68
COG2099	257	CobK Precorrin-6x reductase [Coenzyme metabolism]	96.68
COG1810	224	Uncharacterized protein conserved in archaea [Func	96.67
PRK08818	370	prephenate dehydrogenase; Provisional	96.66
COG1832	140	Predicted CoA-binding protein [General function pr	96.66
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	96.65
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.62
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.61
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.61
PRK09414	445	glutamate dehydrogenase; Provisional	96.6
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.59
PF02593	217	dTMP_synthase: Thymidylate synthase; InterPro: IPR	96.56
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.55
PLN02858	1378	fructose-bisphosphate aldolase	96.53
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	96.51
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.48
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.48
PRK06091	555	membrane protein FdrA; Validated	96.46
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.44
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	96.43
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	96.39
PRK08328	231	hypothetical protein; Provisional	96.36
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.33
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.32
KOG0409	327	consensus Predicted dehydrogenase [General functio	96.29
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.28
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.23
PF07755	301	DUF1611: Protein of unknown function (DUF1611); In	96.19
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.19
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	96.18
PLN02696	454	1-deoxy-D-xylulose-5-phosphate reductoisomerase	96.17
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.16
COG3367	339	Uncharacterized conserved protein [Function unknow	96.16
KOG0455	364	consensus Homoserine dehydrogenase [Amino acid tra	96.14
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	96.14
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.14
PRK08605	332	D-lactate dehydrogenase; Validated	96.12
PRK07411	390	hypothetical protein; Validated	96.09
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.09
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.08
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.07
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.05
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.04
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	96.03
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.0
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.0
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.99
PRK06046	326	alanine dehydrogenase; Validated	95.98
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.98
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.97
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	95.94
PRK06444	197	prephenate dehydrogenase; Provisional	95.94
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	95.92
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.91
PRK06545	359	prephenate dehydrogenase; Validated	95.91
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.89
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.88
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.88
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.85
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	95.85
PLN03139	386	formate dehydrogenase; Provisional	95.84
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.81
PLN02778	298	3,5-epimerase/4-reductase	95.76
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	95.76
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.75
PLN00016	378	RNA-binding protein; Provisional	95.74
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	95.73
PRK07574	385	formate dehydrogenase; Provisional	95.71
PRK10124	463	putative UDP-glucose lipid carrier transferase; Pr	95.67
KOG2742	367	consensus Predicted oxidoreductase [General functi	95.67
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	95.6
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.58
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.58
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	95.52
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	95.49
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.45
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.43
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.43
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	95.41
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	95.37
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.35
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.34
TIGR00243	389	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	95.32
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.21
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	95.21
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.21
COG1260	362	INO1 Myo-inositol-1-phosphate synthase [Lipid meta	95.19
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	95.15
PRK06141	314	ornithine cyclodeaminase; Validated	95.14
PRK07340	304	ornithine cyclodeaminase; Validated	95.1
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.1
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	95.08
TIGR03025	445	EPS_sugtrans exopolysaccharide biosynthesis polypr	95.07
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	95.07
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	95.04
TIGR03023	451	WcaJ_sugtrans Undecaprenyl-phosphate glucose phosp	94.99
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	94.95
PRK13243	333	glyoxylate reductase; Reviewed	94.94
PRK13403	335	ketol-acid reductoisomerase; Provisional	94.92
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.9
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	94.89
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	94.89
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	94.86
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	94.84
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.83
PLN02427	386	UDP-apiose/xylose synthase	94.82
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	94.81
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.79
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	94.78
COG4569	310	MhpF Acetaldehyde dehydrogenase (acetylating) [Sec	94.76
PRK09496	453	trkA potassium transporter peripheral membrane com	94.75
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	94.69
PRK07877	722	hypothetical protein; Provisional	94.64
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	94.64
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.62
TIGR03022	456	WbaP_sugtrans Undecaprenyl-phosphate galactose pho	94.6
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.54
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.53
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.52
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.5
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	94.5
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	94.49
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	94.46
PRK05865	854	hypothetical protein; Provisional	94.46
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.39
PRK05086	312	malate dehydrogenase; Provisional	94.39
PLN02477	410	glutamate dehydrogenase	94.37
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	94.36
PLN00106	323	malate dehydrogenase	94.35
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.33
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.32
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	94.29
COG0300	265	DltE Short-chain dehydrogenases of various substra	94.22
PRK14851	679	hypothetical protein; Provisional	94.21
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.17
PRK06436	303	glycerate dehydrogenase; Provisional	94.11
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	94.07
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.05
PRK15204	476	undecaprenyl-phosphate galactose phosphotransferas	94.03
PRK08291	330	ectoine utilization protein EutC; Validated	94.01
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	94.01
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	93.97
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	93.93
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	93.92
PRK14030	445	glutamate dehydrogenase; Provisional	93.92
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	93.88
PLN00112	444	malate dehydrogenase (NADP); Provisional	93.82
PRK12480	330	D-lactate dehydrogenase; Provisional	93.79
COG0743	385	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	93.77
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	93.74
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	93.73
PLN02260	668	probable rhamnose biosynthetic enzyme	93.72
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	93.72
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.7
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	93.69
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	93.66
PRK14852	989	hypothetical protein; Provisional	93.64
PTZ00117	319	malate dehydrogenase; Provisional	93.62
PRK06988	312	putative formyltransferase; Provisional	93.61
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	93.61
PLN02166	436	dTDP-glucose 4,6-dehydratase	93.59
PRK06223	307	malate dehydrogenase; Reviewed	93.49
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.48
PTZ00325	321	malate dehydrogenase; Provisional	93.45
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	93.45
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	93.45
PLN00203	519	glutamyl-tRNA reductase	93.43
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	93.38
PRK05993	277	short chain dehydrogenase; Provisional	93.38
PLN02695	370	GDP-D-mannose-3',5'-epimerase	93.29
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	93.2
PRK12320	699	hypothetical protein; Provisional	93.2
PRK14031	444	glutamate dehydrogenase; Provisional	93.14
KOG0172	445	consensus Lysine-ketoglutarate reductase/saccharop	93.13
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	93.13
PRK09135	249	pteridine reductase; Provisional	93.05
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	93.02
PRK05693	274	short chain dehydrogenase; Provisional	92.99
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	92.98
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	92.95
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	92.93
PRK06947	248	glucose-1-dehydrogenase; Provisional	92.93
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	92.92
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	92.84
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	92.79
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	92.7
PLN02206	442	UDP-glucuronate decarboxylase	92.63
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	92.6
PLN02602	350	lactate dehydrogenase	92.56
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	92.54
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	92.54
PLN02214	342	cinnamoyl-CoA reductase	92.54
PRK13940	414	glutamyl-tRNA reductase; Provisional	92.48
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	92.48
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	92.48
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	92.46
PRK08177	225	short chain dehydrogenase; Provisional	92.42
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	92.38
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	92.35
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	92.24
PLN02494	477	adenosylhomocysteinase	92.21
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	92.16
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	92.15
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	92.13
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	92.12
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	92.05
PRK06395	435	phosphoribosylamine--glycine ligase; Provisional	91.95
PRK06182	273	short chain dehydrogenase; Validated	91.86
PRK14982	340	acyl-ACP reductase; Provisional	91.84
PRK10675	338	UDP-galactose-4-epimerase; Provisional	91.84
PLN02240	352	UDP-glucose 4-epimerase	91.63
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	91.61
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	91.47
PRK10669	558	putative cation:proton antiport protein; Provision	91.46
PTZ00075	476	Adenosylhomocysteinase; Provisional	91.42
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	91.41
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	91.37
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	91.36
), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844	100	GARS_N: Phosphoribosylglycinamide synthetase, N do	91.35
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.32
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	91.28
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	91.27
COG1042	598	Acyl-CoA synthetase (NDP forming) [Energy producti	91.27
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.22
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	91.21
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	91.18
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	91.17
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	91.14
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	91.09
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	91.08
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	91.07
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	91.05
PRK05884	223	short chain dehydrogenase; Provisional	91.03
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	90.99
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	90.91
PRK10538	248	malonic semialdehyde reductase; Provisional	90.82
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.67
PRK06932	314	glycerate dehydrogenase; Provisional	90.64
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	90.62
PRK09134	258	short chain dehydrogenase; Provisional	90.62
PRK08340	259	glucose-1-dehydrogenase; Provisional	90.62
PLN02260	668	probable rhamnose biosynthetic enzyme	90.6
PRK15076	431	alpha-galactosidase; Provisional	90.47
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	90.43
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	90.39
PRK06487	317	glycerate dehydrogenase; Provisional	90.36
PRK11730	715	fadB multifunctional fatty acid oxidation complex	90.35
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	90.32
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.32
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	90.31
PRK06823	315	ornithine cyclodeaminase; Validated	90.31
PRK12464	383	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	90.31
PRK05442	326	malate dehydrogenase; Provisional	90.3
PRK06180	277	short chain dehydrogenase; Provisional	90.26
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	90.21
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	90.17
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	90.15
PRK03659	601	glutathione-regulated potassium-efflux system prot	90.14
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	90.14
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	90.13
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	90.09
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	90.07
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	90.05
PRK06153	393	hypothetical protein; Provisional	90.01
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	90.0
PRK12938	246	acetyacetyl-CoA reductase; Provisional	89.97
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.96
PRK08267	260	short chain dehydrogenase; Provisional	89.91
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	89.9
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	89.85
PRK07454	241	short chain dehydrogenase; Provisional	89.81
PLN03209	576	translocon at the inner envelope of chloroplast su	89.78
PRK08017	256	oxidoreductase; Provisional	89.74
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	89.68
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	89.67
PRK06407	301	ornithine cyclodeaminase; Provisional	89.61
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	89.53
PLN02928	347	oxidoreductase family protein	89.53
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	89.47
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	89.37
PRK06953	222	short chain dehydrogenase; Provisional	89.28
PLN02306	386	hydroxypyruvate reductase	89.27
PLN00198	338	anthocyanidin reductase; Provisional	89.25
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	89.19
KOG4354	340	consensus N-acetyl-gamma-glutamyl-phosphate reduct	89.13
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	89.12
PF13727	175	CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.	89.12
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	89.09
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	89.06
PRK07904	253	short chain dehydrogenase; Provisional	89.02
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	88.96
PRK07825	273	short chain dehydrogenase; Provisional	88.9
PRK03562	621	glutathione-regulated potassium-efflux system prot	88.87
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	88.84
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	88.81
PRK06179	270	short chain dehydrogenase; Provisional	88.65
PRK06719	157	precorrin-2 dehydrogenase; Validated	88.54
PLN02650	351	dihydroflavonol-4-reductase	88.52
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.45
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	88.43
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	88.41
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	88.4
PRK12743	256	oxidoreductase; Provisional	88.39
TIGR00877	423	purD phosphoribosylamine--glycine ligase. This enz	88.34
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	88.32
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	88.26
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	88.12
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	88.01
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	88.0
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	87.97
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	87.96
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	87.93
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.86
PRK06199	379	ornithine cyclodeaminase; Validated	87.84
PRK07326	237	short chain dehydrogenase; Provisional	87.72
PRK12939	250	short chain dehydrogenase; Provisional	87.68
PRK13789	426	phosphoribosylamine--glycine ligase; Provisional	87.55
PRK06483	236	dihydromonapterin reductase; Provisional	87.48
PRK06139	330	short chain dehydrogenase; Provisional	87.46
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	87.45
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	87.41
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	87.35
PRK07074	257	short chain dehydrogenase; Provisional	87.35
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	87.3
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.26
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	87.22
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	87.07
PRK06523	260	short chain dehydrogenase; Provisional	87.06
PRK07589	346	ornithine cyclodeaminase; Validated	87.05
KOG2733	423	consensus Uncharacterized membrane protein [Functi	87.05
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	86.97
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.7
COG0027	394	PurT Formate-dependent phosphoribosylglycinamide f	86.68
PRK06482	276	short chain dehydrogenase; Provisional	86.67
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	86.61
PRK05872	296	short chain dehydrogenase; Provisional	86.59
PRK07478	254	short chain dehydrogenase; Provisional	86.59
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	86.54
COG3268	382	Uncharacterized conserved protein [Function unknow	86.53
PRK08219	227	short chain dehydrogenase; Provisional	86.5
PRK07578	199	short chain dehydrogenase; Provisional	86.49
TIGR00514	449	accC acetyl-CoA carboxylase, biotin carboxylase su	86.49
PRK09186	256	flagellin modification protein A; Provisional	86.44
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.25
PRK07806	248	short chain dehydrogenase; Provisional	86.24
PRK12827	249	short chain dehydrogenase; Provisional	86.18
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	86.09
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	86.0
PRK00885	420	phosphoribosylamine--glycine ligase; Provisional	85.99
PRK12742	237	oxidoreductase; Provisional	85.92
PRK07023	243	short chain dehydrogenase; Provisional	85.88
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	85.87
PRK09009	235	C factor cell-cell signaling protein; Provisional	85.86
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	85.82
PRK00005	309	fmt methionyl-tRNA formyltransferase; Reviewed	85.78
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	85.63

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.2e-78  Score=549.36  Aligned_cols=251  Identities=29%  Similarity=0.400  Sum_probs=230.9

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (303)
                      |||||+|+||+|||||.+++++.+.|+++|+++++++   ..|.|+++++|.+ ..++++++|+....      .++||+
T Consensus         1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~-~~gv~v~~~~~~~~------~~~DV~   73 (266)
T COG0289           1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG-LLGVPVTDDLLLVK------ADADVL   73 (266)
T ss_pred             CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc-ccCceeecchhhcc------cCCCEE
Confidence            5899999999999999999999999999999999964   4688999999884 88999999966665      589999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCC--CcEEE
Q 022057          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEI  188 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~--~dieI  188 (303)
                      ||||+|+.+.++++.|+++|+++|||||||++++.+.|++++++  +|+++|||||+|+|||++|++++++++  ||+||
T Consensus        74 IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~NfSiGvnll~~l~~~aak~l~~~DiEI  151 (266)
T COG0289          74 IDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPNFSLGVNLLFKLAEQAAKVLDDYDIEI  151 (266)
T ss_pred             EECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEeccchHHHHHHHHHHHHHHHhcCCCCEEe
Confidence            99999999999999999999999999999999999999999999  999999999999999999999998875  69999


Q ss_pred             EEccC-CCCCCCcHHHHHHHHHHHhcC-------cccccCcccccccccCccccCCceeEEEEEcCCCceeEEEEEccCC
Q 022057          189 VESRP-NARDFPSPDATQIANNLSNLG-------QIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPG  260 (303)
Q Consensus       189 iE~Hh-~K~DaPSGTA~~l~~~i~~~~-------~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg~H~V~f~~~~  260 (303)
                      +|+|| +|+|||||||++|+|.|++.+       .+|.|++.++   .|.    +++|+|||+|+|++||+|||+|+++|
T Consensus       152 iE~HHr~K~DAPSGTAl~lae~ia~~~~~~~~~~~v~~r~G~~g---~r~----~~~Igi~svR~G~ivG~H~V~F~~~G  224 (266)
T COG0289         152 IEAHHRHKKDAPSGTALKLAEAIAEARGQDLKDEAVYGREGATG---ARK----EGEIGIHSVRGGDIVGEHEVIFAGEG  224 (266)
T ss_pred             hhhhcccCCCCCcHHHHHHHHHHHHhhccccccceeecccCCcC---CCC----CCCceeEEeecCCcceeEEEEEecCC
Confidence            99999 699999999999999999843       2456776543   332    36899999999999999999999999


Q ss_pred             eEEEEEEecCCccccHHHHHHHHHHhhcCCCceEEeeEEe
Q 022057          261 EVYSIKHDITDVQSLMPGLILAIRKVVHLKVTNHIIFQTV  300 (303)
Q Consensus       261 E~iel~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~~~~~~~~  300 (303)
                      |+|||+|+|+||.+||+||++||+|+.+|+||+|.+.|+.
T Consensus       225 E~iei~H~A~sR~~Fa~Gal~aa~wi~~k~~g~Y~m~dvL  264 (266)
T COG0289         225 ERIEIRHRATSRDSFARGALLAARWLVGKPPGLYDMEDVL  264 (266)
T ss_pred             cEEEEEEeeccHHHHHHHHHHHHHHHhCCCCCccchHHhh
Confidence            9999999999999999999999999999999999999875

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=100.00  E-value=3.7e-71  Score=512.51  Aligned_cols=252  Identities=27%  Similarity=0.391  Sum_probs=225.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ||||+|+||+|+||+.+++.+.+.|+++|++++|+.   ..+++++++.+.. +.++++++|++++ .     .++||||
T Consensus         1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l-~-----~~~DvVI   73 (266)
T TIGR00036         1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAV-E-----TDPDVLI   73 (266)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHh-c-----CCCCEEE
Confidence            489999997799999999999999999999999942   2366777777653 4689999999998 3     4799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCC--CcEEEE
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEIV  189 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~--~dieIi  189 (303)
                      |||+|+.+.++++.|+++|+|+|+|||||++++.++|.++|+++|++++++||||+|+|+|.++++.+++++  ||+||+
T Consensus        74 dfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l~~~dieI~  153 (266)
T TIGR00036        74 DFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGDYDIEII  153 (266)
T ss_pred             ECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhccCCCEEee
Confidence            999999999999999999999999999999999999999999999999999999999999999988888764  799999


Q ss_pred             EccC-CCCCCCcHHHHHHHHHHHhcC-------cccccCcccccccccCccccCCceeEEEEEcCCCceeEEEEEccCCe
Q 022057          190 ESRP-NARDFPSPDATQIANNLSNLG-------QIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGE  261 (303)
Q Consensus       190 E~Hh-~K~DaPSGTA~~l~~~i~~~~-------~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg~H~V~f~~~~E  261 (303)
                      |+|| +|+|+|||||++|++.|++.+       ..|+|++..   +.|+    +++|+|||+|+|+++|+|||+|++++|
T Consensus       154 E~HH~~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~~~---~~r~----~~~i~i~s~R~g~i~g~h~v~f~~~~e  226 (266)
T TIGR00036       154 ELHHRHKKDAPSGTALKTAEMIAEARGERLKNVAVTEREGLT---GERG----REEIGIHAVRGGDVVGEHTVMFAGDGE  226 (266)
T ss_pred             eeccCCCCCCCCHHHHHHHHHHHHhhccccccCccccccCCc---CCCC----CCccceEEEecCCceEEEEEEEcCCCe
Confidence            9999 599999999999999998743       234555433   2454    378999999999999999999999999


Q ss_pred             EEEEEEecCCccccHHHHHHHHHHhhcCCCceEEeeEEe
Q 022057          262 VYSIKHDITDVQSLMPGLILAIRKVVHLKVTNHIIFQTV  300 (303)
Q Consensus       262 ~iel~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~~~~~~~~  300 (303)
                      +|||+|+|.||++||+|||+||+||.+|+||+|.|.|++
T Consensus       227 ~i~i~H~a~~R~~fa~Gal~Aa~~l~~~~~g~y~m~dvl  265 (266)
T TIGR00036       227 RLEITHRASSRACFANGAVRAARWLADKEAGVYDMEDVL  265 (266)
T ss_pred             EEEEEEEECcHHHhHHHHHHHHHHHcCCCCcEEeHHHhc
Confidence            999999999999999999999999999999999999874

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=100.00  E-value=4.6e-66  Score=476.20  Aligned_cols=245  Identities=29%  Similarity=0.372  Sum_probs=212.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ||||+|+|++|+||+.+++.+.+.++++|++++|++..  .....    ...+++.++|++++++      ++|+|||||
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~--~~~~~----~~~~i~~~~dl~~ll~------~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS--PLVGQ----GALGVAITDDLEAVLA------DADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc--ccccc----CCCCccccCCHHHhcc------CCCEEEECC
Confidence            58999999999999999999988899999999997531  11111    2567888999999983      699999999


Q ss_pred             CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCC--CcEEEEEcc
Q 022057          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEIVESR  192 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~--~dieIiE~H  192 (303)
                      +|+.+.++++.|+++|+|+|+|||||++++.++|.++++  ++|++++||||+|++++.++++.+++.+  ||+||+|+|
T Consensus        69 ~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa~--~~~v~~s~n~s~g~~~~~~l~~~aa~~l~~~d~ei~E~H  146 (257)
T PRK00048         69 TPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAAK--KIPVVIAPNFSIGVNLLMKLAEKAAKYLGDYDIEIIEAH  146 (257)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhc--CCCEEEECcchHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence            999999999999999999999999999999999999664  4999999999999999999988877754  699999999


Q ss_pred             C-CCCCCCcHHHHHHHHHHHhcCc-------ccccCcccccccccCccccCCceeEEEEEcCCCceeEEEEEccCCeEEE
Q 022057          193 P-NARDFPSPDATQIANNLSNLGQ-------IYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYS  264 (303)
Q Consensus       193 h-~K~DaPSGTA~~l~~~i~~~~~-------~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg~H~V~f~~~~E~ie  264 (303)
                      | +|+|+|||||++|++.|++.+.       .++|.+      .+|+. .+++|+|||+|+|+++|+|||+|++++|+||
T Consensus       147 H~~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~------~~~~~-~~~~i~i~s~R~g~~~g~h~v~f~~~~e~i~  219 (257)
T PRK00048        147 HRHKVDAPSGTALKLAEAIAEARGRDLKEVAVYGREG------ATGAR-VKGEIGIHSVRGGDIVGEHEVIFAGDGERIE  219 (257)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhhcccccccceeccCC------ccCCc-CCCCccEEEEEcCCceEEEEEEEecCCcEEE
Confidence            9 5999999999999999987431       222322      22221 1368999999999999999999999999999


Q ss_pred             EEEecCCccccHHHHHHHHHHhhcCCCceEEeeEEe
Q 022057          265 IKHDITDVQSLMPGLILAIRKVVHLKVTNHIIFQTV  300 (303)
Q Consensus       265 l~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~~~~~~~~  300 (303)
                      |+|+|+||++||+|||+||+||.+++||+|.+.|++
T Consensus       220 i~H~a~~R~~fa~Gal~aa~~~~~~~~g~y~~~d~l  255 (257)
T PRK00048        220 IRHDATSRMSFAPGALLAARWLVGKKPGLYGMEDVL  255 (257)
T ss_pred             EEEEECcHHhHHHHHHHHHHHHhCCCCcEECHHHhh
Confidence            999999999999999999999999999999998875

>PLN02775 Probable dihydrodipicolinate reductase

Probab=100.00  E-value=1.6e-65  Score=474.74  Aligned_cols=257  Identities=19%  Similarity=0.283  Sum_probs=217.7

Q ss_pred             cCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCCCCCCeeec--CCHHHHHhccccCC
Q 022057           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVM--SDLTMVLGSISQSK  105 (303)
Q Consensus        29 ~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~-~~~g~~~~~gv~v~--~dl~~~l~~~~~~~  105 (303)
                      .+|++|.+||+|+|++||||+++++++.+ ++++||+.+|+...|.+.+ ++.|    .+++++  +|+++++.+.+ ..
T Consensus         5 ~~~~~~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g----~~v~~~~~~dl~~~l~~~~-~~   78 (286)
T PLN02775          5 ASPPGSAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCG----VEVRLVGPSEREAVLSSVK-AE   78 (286)
T ss_pred             CCCcCCCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccccceecc----ceeeeecCccHHHHHHHhh-cc
Confidence            35667889999999999999999999998 9999999999866666766 6654    278888  99999996411 12


Q ss_pred             Ccc-EEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCC-
Q 022057          106 ARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY-  183 (303)
Q Consensus       106 ~~D-VvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~-  183 (303)
                      .+| |+||||+|+++.+++++|+++|+|+|+|||||++++++   ++++++++|++|+||||+|+|||+++++.+++++ 
T Consensus        79 ~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~---~~~~~~~i~vv~apNfSiGv~ll~~l~~~aA~~l~  155 (286)
T PLN02775         79 YPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLL---KDVEESGVYAVIAPQMGKQVVAFQAAMEIMAEQFP  155 (286)
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHH---HHHhcCCccEEEECcccHHHHHHHHHHHHHHHhcc
Confidence            699 99999999999999999999999999999999998655   4455567999999999999999999988877654 


Q ss_pred             -----CcEEEEEccC-CCCCCCcHHHHHHHHHHHhcCcccccCcccccccccCccccCCceeEE--EEEcCCCceeEEEE
Q 022057          184 -----KNVEIVESRP-NARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVH--SMVLPGLPSSTTVY  255 (303)
Q Consensus       184 -----~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~ih--S~R~g~ivg~H~V~  255 (303)
                           ||+||+|+|| +|+|+ ||||++|++.|++++..|.+++....   |.+.-..++++||  |+|+|+   +|||+
T Consensus       156 ~~f~~yDiEIiE~HH~~K~Da-SGTA~~lae~i~~~g~~~~~~~~~~~---R~~~~~~~~igi~~~~lRgg~---~HtV~  228 (286)
T PLN02775        156 GAFSGYTLEVVESHQATKLDT-SGTAKAVISSFRKLGVSFDMDQIELI---RDPKQQLEGVGVPEEHLNGHA---FHTYR  228 (286)
T ss_pred             cccCCCCEEEEECCCCCCCCC-cHHHHHHHHHHHHhCCcccccccccc---cCccccccccceeeecccCCC---cEEEE
Confidence                 7899999999 69999 99999999999885544555544321   1110012578895  999999   89999


Q ss_pred             EccCCeE--EEEEEecCCccccHHHHHHHHHHhhcC-----CCceEEeeEEee
Q 022057          256 FSRPGEV--YSIKHDITDVQSLMPGLILAIRKVVHL-----KVTNHIIFQTVC  301 (303)
Q Consensus       256 f~~~~E~--iel~H~a~sR~~Fa~Gal~Aa~~l~~~-----~~g~~~~~~~~~  301 (303)
                      |.+++|+  |||+|+|+||++||.|||+||+||.+|     +||+|+|.|++.
T Consensus       229 f~~~~E~~~iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~pGlY~M~DVL~  281 (286)
T PLN02775        229 LTSPDGTVSFEFQHNVCGRSIYAEGTVDAVLFLAKKIAEGADKRIYNMIDVLR  281 (286)
T ss_pred             EecCCCeEEEEEEEEeCcHHHHHHHHHHHHHHHhcCcccCCCCCccCHHHHHh
Confidence            9999999  999999999999999999999999999     589999999763

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=100.00  E-value=2.8e-65  Score=471.12  Aligned_cols=243  Identities=19%  Similarity=0.250  Sum_probs=216.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCCCCCCeee------cCCHHHHHhccccCCCcc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQPLEIPV------MSDLTMVLGSISQSKARA  108 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~-vd~~~~g~d~~~~~g~~~~~gv~v------~~dl~~~l~~~~~~~~~D  108 (303)
                      +||+|+||+||||+++++++.+ ++++||+. +|++..+.|.+++.|.    ++++      +.+++++++     ..+|
T Consensus         1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~----~v~v~~~~~~~~~l~~~~~-----~~~d   70 (275)
T TIGR02130         1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAEVAGK----EILLHGPSEREARIGEVFA-----KYPE   70 (275)
T ss_pred             CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhhhccc----ceeeeccccccccHHHHHh-----hcCC
Confidence            5899999999999999999987 99999998 8877667888888763    7888      889999985     4599


Q ss_pred             -EEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCC----
Q 022057          109 -VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY----  183 (303)
Q Consensus       109 -VvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~----  183 (303)
                       |+||||+|+++++++++|+++|+|+|+|||||+++++++|.+.   .++|++|+||||+|+|||+++++.+++++    
T Consensus        71 ~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l~~~---~~i~~l~apNfSiGv~ll~~~~~~aA~~~~~~f  147 (275)
T TIGR02130        71 LICIDYTHPSAVNDNAAFYGKHGIPFVMGTTGGDREALAKLVAD---AKHPAVIAPNMAKQIVAFLAAIEFLAEEFPGAF  147 (275)
T ss_pred             EEEEECCChHHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHh---cCCCEEEECcccHHHHHHHHHHHHHHHhhcccc
Confidence             9999999999999999999999999999999999987777544   45999999999999999999988887755    


Q ss_pred             --CcEEEEEccC-CCCCCCcHHHHHHHHHHHhcCcccccCcccccccccCccccCC-ceeEEEEEcCCCce---eEEEEE
Q 022057          184 --KNVEIVESRP-NARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGED-GVRVHSMVLPGLPS---STTVYF  256 (303)
Q Consensus       184 --~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~-~i~ihS~R~g~ivg---~H~V~f  256 (303)
                        ||+||+|+|| +|+|+ ||||++|++.+++++..|+|+++++   .|.    ++ +|+|||+|+ +++|   +|||+|
T Consensus       148 ~~ydvEIiE~HH~~K~Da-SGTA~~l~~~i~~~~~~~~~~~~~~---~R~----~~~~igi~siR~-~~vgGh~~Htv~f  218 (275)
T TIGR02130       148 AGYKLEVMESHQASKADA-SGTAKAVIGCFQKLGFDYDMDDIEK---IRD----EKEQIERMGVPE-EHLGGHAFHLYHL  218 (275)
T ss_pred             CCCCEEEEEcCCCCCCCC-CHHHHHHHHHHHHhCCccCcccccc---cCC----CCCccceEEecC-cccCCCccEEEEE
Confidence              5999999999 69999 9999999999987666688877654   332    23 899999999 6666   999999


Q ss_pred             ccCCeE--EEEEEecCCccccHHHHHHHHHHhhcC-----CCceEEeeEEe
Q 022057          257 SRPGEV--YSIKHDITDVQSLMPGLILAIRKVVHL-----KVTNHIIFQTV  300 (303)
Q Consensus       257 ~~~~E~--iel~H~a~sR~~Fa~Gal~Aa~~l~~~-----~~g~~~~~~~~  300 (303)
                      .+++|+  |||+|+|.||++||.|||+||+||.+|     +||+|++.|++
T Consensus       219 ~s~~e~i~iel~H~A~sR~~FA~GAl~AA~wL~~k~~~~~~~GlY~m~DvL  269 (275)
T TIGR02130       219 DSADGTVHFEFQHNVCGRKIYAEGTVDAVLFLADKIIAAAEAKIFNMIDVL  269 (275)
T ss_pred             ecCCCeEEEEEEEEECcHHHHHHHHHHHHHHHhcccccCCCCCccCHHHHH
Confidence            999999  699999999999999999999999999     89999999874

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>PF05173 DapB_C: Dihydrodipicolinate reductase, C-terminus; InterPro: IPR022663 This entry represents the C-terminal region of Dihydrodipicolinate reductase

Probab=100.00  E-value=1.2e-40  Score=278.41  Aligned_cols=126  Identities=26%  Similarity=0.268  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHhccC---CCcEEEEEccC-CCCCCCcHHHHHHHHHHHhcCcccccCcccccccccCccccCCceeEEEE
Q 022057          168 GSILLQQAAISASFH---YKNVEIVESRP-NARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSM  243 (303)
Q Consensus       168 Gv~ll~~~a~~~~~~---~~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~  243 (303)
                      |+|||+++++.++++   .||+||+|+|| +|+|+|||||++|++.|.+.+......      ..+++.-.+++|+|||+
T Consensus         1 Gv~ll~~l~~~aa~~l~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~------~~~~~~~~~~~i~v~s~   74 (132)
T PF05173_consen    1 GVNLLMKLAKQAAKLLPNGYDIEIIESHHRQKKDAPSGTALMLAESIAEARDRDLSE------VARGGREQENEIGVHSV   74 (132)
T ss_dssp             HHHHHHHHHHHHHHHTTTTSEEEEEEEE-TT-SSSS-HHHHHHHHHHHHHTTSEHHH------HEEECCGETTCEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCCCEEEEEcccCCCCCCCCHHHHHHHHHHHHhcCccccc------cccccccCCccceEEEE
Confidence            899999998888875   37899999999 699999999999999998854210000      00111002489999999


Q ss_pred             EcCCCceeEEEEEccCCeEEEEEEecCCccccHHHHHHHHHHhhc-CCCceEEeeEE
Q 022057          244 VLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVH-LKVTNHIIFQT  299 (303)
Q Consensus       244 R~g~ivg~H~V~f~~~~E~iel~H~a~sR~~Fa~Gal~Aa~~l~~-~~~g~~~~~~~  299 (303)
                      |+|+++|+|+|+|++++|+|||+|+|+||++||.|||+||+||.+ ++||+|++.|+
T Consensus        75 R~g~i~G~H~V~f~~~~E~i~l~H~a~sR~~Fa~Gal~Aa~~l~~~~~~G~y~m~dv  131 (132)
T PF05173_consen   75 RGGGIVGEHEVIFGSPGETIELTHRAHSRSIFAEGALRAARWLAGKKKPGLYSMDDV  131 (132)
T ss_dssp             E-TT--EEEEEEEEETTEEEEEEEEESSTHHHHHHHHHHHHHHTTSSSSEEE-HHHH
T ss_pred             EcCCCCEEEEEEEcCCCcEEEEEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEehHHh
Confidence            999999999999999999999999999999999999999999999 56999999876

Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 1YL6_B 1YL5_A 1YL7_C 1P9L_B 1C3V_B ....

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=99.97  E-value=6.7e-31  Score=217.26  Aligned_cols=121  Identities=36%  Similarity=0.604  Sum_probs=108.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC---CCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      |||+|+|++||||+.+++.+.++++++|++++|++.   .|+|+++++|.. +.++++++|++++++      .+||+||
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v~~~l~~~~~------~~DVvID   73 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPVTDDLEELLE------EADVVID   73 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBEBS-HHHHTT------H-SEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-CcccccchhHHHhcc------cCCEEEE
Confidence            799999999999999999999999999999999754   799999999985 899999999999995      5999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      ||+|+++.++++.|+++|+|+|+|||||++++.++|++++++  +|++|||||
T Consensus        74 fT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~--~~vl~a~Nf  124 (124)
T PF01113_consen   74 FTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK--IPVLIAPNF  124 (124)
T ss_dssp             ES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT--SEEEE-SSS
T ss_pred             cCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc--CCEEEeCCC
Confidence            999999999999999999999999999999999999999998  999999998

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=99.72  E-value=8.9e-16  Score=142.38  Aligned_cols=132  Identities=15%  Similarity=0.135  Sum_probs=104.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ||||+|+|| |+||+.+++.+.+.++++|++++++...........    ..++++++|++++ .     .++|+||+||
T Consensus         1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~-----~~~DvVve~t   69 (265)
T PRK13303          1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRAL----GEAVRVVSSVDAL-P-----QRPDLVVECA   69 (265)
T ss_pred             CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhh----ccCCeeeCCHHHh-c-----cCCCEEEECC
Confidence            579999999 999999999999999999999997542111112211    1267889999988 4     5899999999


Q ss_pred             CchhHHHHHHHHHHcCCCeEEeCCC-CC-HHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHH
Q 022057          115 DASTVYDNVKQATAFGMRSVVYVPH-IQ-LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS  178 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVigTTG-~~-~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~  178 (303)
                      ++..+.+++..++++|+|+|++++| ++ .+..++|.++|+++|..+++ ++.++|..-+.+.++.
T Consensus        70 ~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v-~sga~gg~d~l~~~~~  134 (265)
T PRK13303         70 GHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHL-LSGAIGGIDALAAAKE  134 (265)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEE-eChHhhCHHHHHHHHh
Confidence            9999999999999999999999997 55 44468899999999998777 6667777544444433

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=99.68  E-value=5e-16  Score=125.68  Aligned_cols=116  Identities=27%  Similarity=0.338  Sum_probs=101.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      |||+|+|+ |.+|+.+...+... +++++++++|++.  ..+..+.   +.++++.|+|++++++.    .++|+|+.+|
T Consensus         1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~I~t   70 (120)
T PF01408_consen    1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDP--ERAEAFA---EKYGIPVYTDLEELLAD----EDVDAVIIAT   70 (120)
T ss_dssp             EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHTTSEEESSHHHHHHH----TTESEEEEES
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCH--HHHHHHH---HHhcccchhHHHHHHHh----hcCCEEEEec
Confidence            69999998 99999999888877 8999999999752  2233333   36788999999999975    6899999999


Q ss_pred             CchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEE
Q 022057          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLI  161 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~  161 (303)
                      ++..+.+.+..++++|+|+++++| +.+.++.++|.++++++++.+.+
T Consensus        71 p~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~V  118 (120)
T PF01408_consen   71 PPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVMV  118 (120)
T ss_dssp             SGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEE
T ss_pred             CCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence            999999999999999999999999 78999999999999999988664

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=99.65  E-value=2.7e-14  Score=132.46  Aligned_cols=227  Identities=14%  Similarity=0.123  Sum_probs=148.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      ||||+|+|+ |+||+.+++.+.+.+ ++++++++|++.  ..+..+.   +.++++.++|+++++      .++|+|+++
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~--~~a~~~a---~~~~~~~~~~~~ell------~~~DvVvi~   68 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNL--EKAENLA---SKTGAKACLSIDELV------EDVDLVVEC   68 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCH--HHHHHHH---HhcCCeeECCHHHHh------cCCCEEEEc
Confidence            579999998 999999999988764 899999999753  2233333   245678899999988      379999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCCCC--CHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcEEEEEc
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES  191 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTTG~--~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~  191 (303)
                      ++|+.+.+++..++++|+++++.++|.  +++..++|.++|+++|..+++.+..-.|...+. .+ .+. ..+.+.+.-.
T Consensus        69 a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~d~i~-a~-~~G-~i~~V~~~~~  145 (265)
T PRK13304         69 ASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGLDGIK-AA-SLG-EIKSVTLTTR  145 (265)
T ss_pred             CChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhHHHHH-HH-hcC-CccEEEEEEe
Confidence            999999999999999999999998863  677788999999999998887543333333331 11 122 2345555554


Q ss_pred             -cCC-CCCC-------------C----cHHHHHHHHHHHhcCcccccCcccccccccCccccCCceeEEEEEcCCCce-e
Q 022057          192 -RPN-ARDF-------------P----SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPS-S  251 (303)
Q Consensus       192 -Hh~-K~Da-------------P----SGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg-~  251 (303)
                       |.. -+++             |    +|||.   |++..++.+.+..-....++.     +...+.+-+.  |++.+ .
T Consensus       146 k~p~~~~~~~~~~~~~~~~~~~~~~~f~G~a~---ea~~~fP~n~Nva~a~ala~~-----~~~~v~l~ad--p~~~~n~  215 (265)
T PRK13304        146 KPPKGLEGALKELGIDLEEIKEPKVLFEGKAF---EAVKKFPANINVAATLSLASI-----YPAKVKIIAD--PNLDRNV  215 (265)
T ss_pred             cChHHhCcChhhcCCCccccccceEEEEecHH---HHHHHCCCchhHHHHHHHhcC-----CCceEEEEEC--CCCCCce
Confidence             432 2222             2    67777   444443322221100001110     1134444443  55555 7


Q ss_pred             EEEEEccCCeEEEEEEec-----CCccccHHHHHHHHHHhh
Q 022057          252 TTVYFSRPGEVYSIKHDI-----TDVQSLMPGLILAIRKVV  287 (303)
Q Consensus       252 H~V~f~~~~E~iel~H~a-----~sR~~Fa~Gal~Aa~~l~  287 (303)
                      |+|..-|++-+++++=+-     ..|+++ --|+-+++-|.
T Consensus       216 h~i~~~g~~g~~~~~~~~~p~~~np~ts~-laa~s~~~~~~  255 (265)
T PRK13304        216 HEITVKGSFGTFKTRVENVPCPDNPKTSA-LAAYSAIRLLK  255 (265)
T ss_pred             EEEEEEecceEEEEEEECCcCCCCCchHH-HHHHHHHHHHH
Confidence            999999999998888444     225553 34444444444

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=99.57  E-value=3.9e-13  Score=125.17  Aligned_cols=224  Identities=15%  Similarity=0.167  Sum_probs=145.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ++||+|+|+ |+||+.+++.+.. .++++|++++|++.  ..+.+++   ..++. +.++|++++++      ++|+|++
T Consensus         6 ~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~dr~~--~~a~~~a---~~~g~~~~~~~~eell~------~~D~Vvi   73 (271)
T PRK13302          6 ELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDP--QRHADFI---WGLRRPPPVVPLDQLAT------HADIVVE   73 (271)
T ss_pred             eeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEECCCH--HHHHHHH---HhcCCCcccCCHHHHhc------CCCEEEE
Confidence            589999998 9999999999987 48999999999753  2233333   24553 56889999983      6899999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcEEEEEc-
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES-  191 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~-  191 (303)
                      +++++.+.++...++++|+++++.++|- .++.++|.++++++|.++.+.+.|--|.-.    .+.. +. -.++.+-. 
T Consensus        74 ~tp~~~h~e~~~~aL~aGk~Vi~~s~ga-l~~~~~L~~~A~~~g~~l~v~sGa~~g~d~----l~~g-~i-G~~~~v~~~  146 (271)
T PRK13302         74 AAPASVLRAIVEPVLAAGKKAIVLSVGA-LLRNEDLIDLARQNGGQIIVPTGALLGLDA----VTAA-AE-GTIHSVKMI  146 (271)
T ss_pred             CCCcHHHHHHHHHHHHcCCcEEEecchh-HHhHHHHHHHHHHcCCEEEEcchHHHhHHH----HHHH-Hc-CCceEEEEE
Confidence            9999999999999999999999987762 235678999999999998887666555432    2221 11 11221111 


Q ss_pred             ---cCC-CCCC---------------C----cHHHHHHHHHHHhcCcccccCcccccccccCccccCCceeEEEEEcCCC
Q 022057          192 ---RPN-ARDF---------------P----SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGL  248 (303)
Q Consensus       192 ---Hh~-K~Da---------------P----SGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~i  248 (303)
                         +.. -+..               |    +|||.   |++..++.+.+..-....++- |-  +...+.+.+.  |++
T Consensus       147 trkpp~~~~g~~~~~~~~~dld~~~~~~~~f~G~a~---ea~~~fP~n~Nvaaa~ala~~-g~--d~t~v~l~ad--P~~  218 (271)
T PRK13302        147 TRKPPDGLKGAPFLVTNNIDIDGLTEPLLLFEGSAR---EAAKGFPANLNVAVALSLAGI-GP--DRTTLEIWAD--PGV  218 (271)
T ss_pred             EecCchHhccChhhhhcCCCccccccceEEEEecHH---HHHHHCCcchhHHHHHHHhcc-Cc--cceEEEEEEC--CCC
Confidence               111 1122               2    67777   444444332221111111111 11  0133444444  888


Q ss_pred             ce-eEEEEEccCCeEEEEEEecCC------ccccHHHHHHHHHHhhc
Q 022057          249 PS-STTVYFSRPGEVYSIKHDITD------VQSLMPGLILAIRKVVH  288 (303)
Q Consensus       249 vg-~H~V~f~~~~E~iel~H~a~s------R~~Fa~Gal~Aa~~l~~  288 (303)
                      .+ .|+|..-|++-+++++  ..|      |++ +--|+-+++-|.+
T Consensus       219 ~~n~H~i~~~g~~g~~~~~--~~~~p~~npkts-~laa~s~~~~l~~  262 (271)
T PRK13302        219 TRNVHRIEVDADSARFSMT--IENIPSENPKTG-RITAQSVIALLRK  262 (271)
T ss_pred             CCceEEEEEEeceEEEEEE--EEcCcCCCCchH-HHHHHHHHHHHHh
Confidence            88 8999999999999988  444      555 3345555554443

>PRK11579 putative oxidoreductase; Provisional

Probab=99.56  E-value=9.3e-14  Score=132.91  Aligned_cols=143  Identities=17%  Similarity=0.164  Sum_probs=114.2

Q ss_pred             ceeEEEEcCCcHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-CeeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ++||||+|+ |.||+ .++..+...++++|++++|++.  ..+.      ..+ ++++|+|+++++++    .++|+|+.
T Consensus         4 ~irvgiiG~-G~i~~~~~~~~~~~~~~~~l~av~d~~~--~~~~------~~~~~~~~~~~~~ell~~----~~vD~V~I   70 (346)
T PRK11579          4 KIRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDA--TKVK------ADWPTVTVVSEPQHLFND----PNIDLIVI   70 (346)
T ss_pred             cceEEEECC-CHHHHHHHHHHHhhCCCCEEEEEECCCH--HHHH------hhCCCCceeCCHHHHhcC----CCCCEEEE
Confidence            589999998 99998 5788888889999999999752  1111      122 45789999999974    68999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHHHHhccCCCcEEEE
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a~~~~~~~~dieIi  189 (303)
                      +|++..+.+.+..|+++||||+|++| +.+.++.++|.++|+++|+.+.+..|  |.....-++++.+.  +..-++..+
T Consensus        71 ~tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~~--g~iG~i~~~  148 (346)
T PRK11579         71 PTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLAE--GVLGEVAYF  148 (346)
T ss_pred             cCCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHhc--CCCCCeEEE
Confidence            99999999999999999999999999 88999999999999999988877666  56666666666532  233455555


Q ss_pred             Ecc
Q 022057          190 ESR  192 (303)
Q Consensus       190 E~H  192 (303)
                      +.|
T Consensus       149 ~~~  151 (346)
T PRK11579        149 ESH  151 (346)
T ss_pred             EEE
Confidence            554

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=99.56  E-value=1.1e-12  Score=121.11  Aligned_cols=230  Identities=11%  Similarity=0.062  Sum_probs=150.5

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |.+||+|+|| |.||+.+++.+...  ++++|+++.++..  .....+.+     .+++++|+++++.     .++|+||
T Consensus         1 ~~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~--~~~~~~~~-----~~~~~~~l~~ll~-----~~~DlVV   67 (267)
T PRK13301          1 MTHRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAA--DLPPALAG-----RVALLDGLPGLLA-----WRPDLVV   67 (267)
T ss_pred             CceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCH--HHHHHhhc-----cCcccCCHHHHhh-----cCCCEEE
Confidence            5689999999 99999999998764  4599999988652  22223332     2778899999875     5899999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCCC-C-CHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcEEEE
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIV  189 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTTG-~-~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIi  189 (303)
                      ++.+|+++.++...++++|+++++..+| | +++..++|.++|++++..+.+ |.-++|..-..+.++...  ...+.+.
T Consensus        68 E~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~i-pSGAigGlD~l~aa~~~~--~~~v~~~  144 (267)
T PRK13301         68 EAAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRV-PAGAIAGLDYLQAVAGRD--DAEVVYE  144 (267)
T ss_pred             ECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEE-eChHHHhHHHHHHhhccC--ceEEEEE
Confidence            9999999999999999999999999986 4 455678899999998887555 888888854444443322  2344433


Q ss_pred             E-ccCC-CCCCC-----------------cHHHHHHHHHHHhcCcccccCcccccccccCccccCCceeEEEEEcCCCce
Q 022057          190 E-SRPN-ARDFP-----------------SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPS  250 (303)
Q Consensus       190 E-~Hh~-K~DaP-----------------SGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg  250 (303)
                      = .|.. -+.+|                 +|||.   |++..++.+.+..-.....+- |-  +...+.+.+.  |++.+
T Consensus       145 t~K~P~sl~g~~~~~~~~l~~~~~~~~~F~G~Ar---eA~~~fP~NvNVaaa~aLAg~-G~--d~t~v~l~aD--P~~~~  216 (267)
T PRK13301        145 SRKPVAAWRAELPGMGIDPDTLAESRTLFSGPAR---EAALRFPKNLNVAATLALAGI-GM--TRTRVEVVVD--PRARG  216 (267)
T ss_pred             EecChhHhccChhhcccccccccCCeEEEEeCHH---HHHHHCCchHHHHHHHHHhcc-Cc--cceEEEEEEC--CCCCC
Confidence            2 2432 22222                 67777   444443322221100001110 10  0123344443  66666


Q ss_pred             -eEEEEEccCCeEEEEEEec----CC-ccccHHHHHHHHHHhhc
Q 022057          251 -STTVYFSRPGEVYSIKHDI----TD-VQSLMPGLILAIRKVVH  288 (303)
Q Consensus       251 -~H~V~f~~~~E~iel~H~a----~s-R~~Fa~Gal~Aa~~l~~  288 (303)
                       .|+|..-|+.-+++++=+-    .| |++ +--|+-+++-|.+
T Consensus       217 N~H~I~v~g~~g~~~~~~~n~p~~~NPkTS-~laa~Svv~~l~~  259 (267)
T PRK13301        217 NQHRIQVRSPLGEMQIELVNAPSPANPKTS-WLVAQSVLATIRR  259 (267)
T ss_pred             ceEEEEEEeeeEEEEEEEeCCcCCCCCchH-HHHHHHHHHHHHh
Confidence             8999999999999888444    22 444 4445555554443

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=99.55  E-value=3.9e-14  Score=133.80  Aligned_cols=147  Identities=20%  Similarity=0.197  Sum_probs=114.0

Q ss_pred             CceeEEEEcCCc-HHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCee-ecCCHHHHHhccccCCCccEE
Q 022057           34 SNIKVIINGAVK-EIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        34 ~~ikV~V~G~~G-rMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVv  110 (303)
                      +|+||||+|+ | .+++.++..+.+.++ +++++++|++.  ..+..++   +.++++ .|+|+++++++    .++|+|
T Consensus         2 ~~irvgiiG~-G~~~~~~~~~~~~~~~~~~~~vav~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~~----~~iD~V   71 (342)
T COG0673           2 KMIRVGIIGA-GGIAGKAHLPALAALGGGLELVAVVDRDP--ERAEAFA---EEFGIAKAYTDLEELLAD----PDIDAV   71 (342)
T ss_pred             CeeEEEEEcc-cHHHHHHhHHHHHhCCCceEEEEEecCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEE
Confidence            4799999998 6 555679999988887 79999999763  2334444   367775 89999999974    568999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCcH--HHHHHHHHHHHhccCCCcEE
Q 022057          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI--GSILLQQAAISASFHYKNVE  187 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~Si--Gv~ll~~~a~~~~~~~~die  187 (303)
                      +..|++..+.+.+..|+++||||+|++| +.+.++.++|.++|+++|+.+.+.-|+-.  .+.-++++...  ...-++.
T Consensus        72 ~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~~--g~lG~v~  149 (342)
T COG0673          72 YIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELIDS--GALGEVV  149 (342)
T ss_pred             EEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHHhc--CCcCceE
Confidence            9999999999999999999999999999 89999999999999999888877666443  33334444322  1234555


Q ss_pred             EEEcc
Q 022057          188 IVESR  192 (303)
Q Consensus       188 IiE~H  192 (303)
                      .++.+
T Consensus       150 ~~~~~  154 (342)
T COG0673         150 SVQAS  154 (342)
T ss_pred             EEEEE
Confidence            55543

>PRK10206 putative oxidoreductase; Provisional

Probab=99.49  E-value=3.9e-13  Score=128.90  Aligned_cols=145  Identities=19%  Similarity=0.132  Sum_probs=112.3

Q ss_pred             ceeEEEEcCCcHHHH-HHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCCC-eeecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGR-AAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~-~i~~~i~~-~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g-v~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |+||||+|+ |++++ .++..+.. .++++|++++|++.   +..+.+   ..++ +++|+|+++++++    .++|+|+
T Consensus         1 ~irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~~~---~~~~~~---~~~~~~~~~~~~~ell~~----~~iD~V~   69 (344)
T PRK10206          1 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHA---KPEEQA---PIYSHIHFTSDLDEVLND----PDVKLVV   69 (344)
T ss_pred             CeEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcCCh---hHHHHH---HhcCCCcccCCHHHHhcC----CCCCEEE
Confidence            689999998 99774 56776654 46899999999753   112222   2344 6789999999974    6899999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHHHHhccCCCcEEE
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEI  188 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a~~~~~~~~dieI  188 (303)
                      .+|++..+.+.+..|+++||||+|++| ..+.++.++|.++|+++|+.+....|  |.....-++++.+.  +..-++--
T Consensus        70 I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~li~~--g~iG~i~~  147 (344)
T PRK10206         70 VCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIES--GKLGEIVE  147 (344)
T ss_pred             EeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHHHHHHHHHc--CCCCCeEE
Confidence            999999999999999999999999999 78899999999999999999888776  55555556666542  22334444


Q ss_pred             EEcc
Q 022057          189 VESR  192 (303)
Q Consensus       189 iE~H  192 (303)
                      ++.|
T Consensus       148 i~~~  151 (344)
T PRK10206        148 VESH  151 (344)
T ss_pred             EEEE
Confidence            5543

>PRK08374 homoserine dehydrogenase; Provisional

Probab=99.43  E-value=1.1e-12  Score=125.61  Aligned_cols=141  Identities=14%  Similarity=0.143  Sum_probs=105.5

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhc---------CCcEEEEEEecC-----CCCcchhhhhcCCCCCC-eee--------
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IPV--------   90 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~---------~~~eLvg~vd~~-----~~g~d~~~~~g~~~~~g-v~v--------   90 (303)
                      |++||+|+|+ |.+|+.+++.+.++         -+++|+++.|++     ..|-+...+.....+.+ +.-        
T Consensus         1 ~~i~VaIiG~-GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~   79 (336)
T PRK08374          1 MEVKVSIFGF-GNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVY   79 (336)
T ss_pred             CeeEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhcccccccc
Confidence            5799999998 99999999988763         148899999853     22444433221111111 000        


Q ss_pred             cCCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHH
Q 022057           91 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (303)
Q Consensus        91 ~~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~  170 (303)
                      ..++++++++    .++||+||||+++.+.++...++++|+|||++++|.-....++|.++++++++++++++|++.|+-
T Consensus        80 ~~~~~ell~~----~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP  155 (336)
T PRK08374         80 NFSPEEIVEE----IDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP  155 (336)
T ss_pred             CCCHHHHHhc----CCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence            1167788753    579999999999999999999999999999999974334556889999999999999999999998


Q ss_pred             HHHHHHHHh
Q 022057          171 LLQQAAISA  179 (303)
Q Consensus       171 ll~~~a~~~  179 (303)
                      ++.-+-..+
T Consensus       156 ii~~l~~~l  164 (336)
T PRK08374        156 IIGLLRENL  164 (336)
T ss_pred             chHHHHhhc
Confidence            765554444

>PRK06270 homoserine dehydrogenase; Provisional

Probab=99.41  E-value=2e-12  Score=124.13  Aligned_cols=142  Identities=15%  Similarity=0.141  Sum_probs=105.0

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcC---------CcEEEEEEecC-----CCCcchhhhhcCCCCCCe-e------ecC
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLEI-P------VMS   92 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~---------~~eLvg~vd~~-----~~g~d~~~~~g~~~~~gv-~------v~~   92 (303)
                      |++||+|+|+ |+||+.+++.+.+.+         +++|++++|++     ..|.+..++.....+.+. .      .+.
T Consensus         1 m~i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~   79 (341)
T PRK06270          1 MEMKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEI   79 (341)
T ss_pred             CeEEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccC
Confidence            6799999998 999999999987654         79999999963     224344333222122221 1      234


Q ss_pred             CHHHHHhccccCCCccEEEEcCCchh-----HHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057           93 DLTMVLGSISQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI  167 (303)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDfT~p~a-----~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~Si  167 (303)
                      |+++++++    .++|||||+|.+..     ..++++.|+++|+|||+++.+......++|.++|+++++.+.+-+...-
T Consensus        80 d~~ell~~----~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~  155 (341)
T PRK06270         80 SGLEVIRS----VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGG  155 (341)
T ss_pred             CHHHHhhc----cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeee
Confidence            88998864    67999999997643     4899999999999999988766556678999999999999988776666


Q ss_pred             HHHHHHHHHHHhc
Q 022057          168 GSILLQQAAISAS  180 (303)
Q Consensus       168 Gv~ll~~~a~~~~  180 (303)
                      |.-++..+-+.+.
T Consensus       156 glPii~~l~~~l~  168 (341)
T PRK06270        156 AMPIINLAKETLA  168 (341)
T ss_pred             chhHHHHHHhhcc
Confidence            6666655544443

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=99.38  E-value=4.4e-12  Score=121.79  Aligned_cols=131  Identities=15%  Similarity=0.152  Sum_probs=104.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      ++||+|+|+  +||+.+++.+.+.+ +++|+|++|++.  ..+.+++   +++|++.|+|+++++++    .++|+|..-
T Consensus         3 ~~rVgViG~--~~G~~h~~al~~~~~~~eLvaV~d~~~--erA~~~A---~~~gi~~y~~~eell~d----~Di~~V~ip   71 (343)
T TIGR01761         3 VQSVVVCGT--RFGQFYLAAFAAAPERFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPDD----IDIACVVVR   71 (343)
T ss_pred             CcEEEEEeH--HHHHHHHHHHHhCCCCcEEEEEEcCCH--HHHHHHH---HHhCCCccCCHHHHhcC----CCEEEEEeC
Confidence            589999997  68999999998887 899999999753  3344444   46888999999999953    344555442


Q ss_pred             C--CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHH
Q 022057          114 T--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS  178 (303)
Q Consensus       114 T--~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~  178 (303)
                      |  ++..+.+.+..|+++||||+|++|=- .+|.++|.++|+++|+.+.+ ..|...+..++++.+.
T Consensus        72 t~~P~~~H~e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l~v-~~f~p~~~~vr~~i~~  136 (343)
T TIGR01761        72 SAIVGGQGSALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYLV-NTFYPHLPAVRRFIEY  136 (343)
T ss_pred             CCCCCccHHHHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEEEE-EecCHHHHHHHHHHHc
Confidence            2  46788999999999999999999932 58899999999999998776 5677777777776643

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.35  E-value=2.1e-11  Score=115.48  Aligned_cols=148  Identities=16%  Similarity=0.061  Sum_probs=119.1

Q ss_pred             CCCceeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCC---eeecCCHHHHHhccccCCC
Q 022057           32 PQSNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKA  106 (303)
Q Consensus        32 ~~~~ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~g---v~v~~dl~~~l~~~~~~~~  106 (303)
                      +++.+|+||+|| |+|++..++++...|  +++++++.|+..  ..+.+++.   ..+   .++|.++|+++.+    ..
T Consensus         3 ~s~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s~--~~A~~fAq---~~~~~~~k~y~syEeLakd----~~   72 (351)
T KOG2741|consen    3 DSATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPSL--ERAKEFAQ---RHNIPNPKAYGSYEELAKD----PE   72 (351)
T ss_pred             CCceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEecccH--HHHHHHHH---hcCCCCCccccCHHHHhcC----CC
Confidence            345799999999 999999999999888  999999999852  55566662   333   4779999999874    78


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEE--cCCCcHHHHHHHHHHHHhccCC
Q 022057          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLI--APTLSIGSILLQQAAISASFHY  183 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~--a~N~SiGv~ll~~~a~~~~~~~  183 (303)
                      +|||+..++...+++.+..++++||||+|++| ..+.+|.++|.++|+++|+-++.  -+-|+.-+.-++.+..  .+.+
T Consensus        73 vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~~lke~l~--~~~~  150 (351)
T KOG2741|consen   73 VDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPRYAKLKELLS--SGVL  150 (351)
T ss_pred             cCEEEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeeeeeecCcHHHHHHHHHh--cccc
Confidence            89998888888899999999999999999999 89999999999999999876553  2445555555666554  4456


Q ss_pred             CcEEEEEc
Q 022057          184 KNVEIVES  191 (303)
Q Consensus       184 ~dieIiE~  191 (303)
                      -|+.-++.
T Consensus       151 Gdvk~v~~  158 (351)
T KOG2741|consen  151 GDVKSVEV  158 (351)
T ss_pred             ccceEEEE
Confidence            67777776

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=99.34  E-value=2.4e-11  Score=115.59  Aligned_cols=133  Identities=16%  Similarity=0.121  Sum_probs=103.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ++||+|+|+ |+||+.+++.+.+.|++||+|++|++.. ..++      ...++..+.|.++++      .++|||+.++
T Consensus         3 kIRVgIVG~-GnIGr~~a~al~~~pd~ELVgV~dr~~~-~~~~------~~~~v~~~~d~~e~l------~~iDVViIct   68 (324)
T TIGR01921         3 KIRAAIVGY-GNLGRSVEKAIQQQPDMELVGVFSRRGA-ETLD------TETPVYAVADDEKHL------DDVDVLILCM   68 (324)
T ss_pred             CcEEEEEee-cHHHHHHHHHHHhCCCcEEEEEEcCCcH-HHHh------hcCCccccCCHHHhc------cCCCEEEEcC
Confidence            599999998 9999999999999999999999997531 1111      123444455666665      4799999999


Q ss_pred             CchhHHHHHHHHHHcCCCeEEeCCC-C-CHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH-HHHhcc
Q 022057          115 DASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA-AISASF  181 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVigTTG-~-~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~-a~~~~~  181 (303)
                      ++..+.+.+..++++|+|||+...- . .++..++|.++|++++...+++.-|-.|..-+.++ .+.+.+
T Consensus        69 Ps~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~lp  138 (324)
T TIGR01921        69 GSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAVLP  138 (324)
T ss_pred             CCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhccCC
Confidence            8899999999999999999998752 2 25678899999998666668888999999765554 444444

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK06349 homoserine dehydrogenase; Provisional

Probab=99.29  E-value=2.7e-11  Score=119.61  Aligned_cols=133  Identities=11%  Similarity=0.091  Sum_probs=103.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC---------CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~---------~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~  105 (303)
                      ++||+|+|+ |.||+.+++.+.+++         +++|++++|++..  .... .   ...+...++|+++++++    .
T Consensus         3 ~i~VgiiG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~--~~~~-~---~~~~~~~~~d~~~ll~d----~   71 (426)
T PRK06349          3 PLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE--KDRG-V---DLPGILLTTDPEELVND----P   71 (426)
T ss_pred             eEEEEEEee-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh--hccC-C---CCcccceeCCHHHHhhC----C
Confidence            599999998 999999998886543         7899999997521  1110 1   12345678899999964    6


Q ss_pred             CccEEEEcCCc-hhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHH
Q 022057          106 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS  178 (303)
Q Consensus       106 ~~DVvIDfT~p-~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~  178 (303)
                      ++|+|||.|.+ +.+.++++.|+++|+|||+...++..++.++|.++|+++|+.+.+-+...-|+-++..+-+.
T Consensus        72 ~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiPii~~l~~~  145 (426)
T PRK06349         72 DIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGGIPIIKALREG  145 (426)
T ss_pred             CCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeeccCchHHHHHhh
Confidence            79999999854 67799999999999999998777777888999999999999999887666666555444433

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=99.25  E-value=1.2e-10  Score=104.61  Aligned_cols=233  Identities=16%  Similarity=0.176  Sum_probs=144.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      |+|+++|| |.+|+.+.+.+... -++|++++.|+..  +++.++.   ...+.+..+++++++      ..+|++|++.
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~--ek~~~~~---~~~~~~~~s~ide~~------~~~DlvVEaA   68 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDE--EKAKELE---ASVGRRCVSDIDELI------AEVDLVVEAA   68 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCH--HHHHHHH---hhcCCCccccHHHHh------hccceeeeeC
Confidence            58999999 99999999998865 3699999999763  3444333   233444458899998      3799999999


Q ss_pred             CchhHHHHHHHHHHcCCCeEEeCCC-CCH-HHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcEEEEEcc
Q 022057          115 DASTVYDNVKQATAFGMRSVVYVPH-IQL-ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESR  192 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVigTTG-~~~-e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~H  192 (303)
                      +|+++.+++..++++|+++++-++| +.+ +-.+++.++++..+.. ++.|.-++|..-....++. . ....+-..-+-
T Consensus        69 S~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~r-v~~pSGAiGGlD~l~aar~-g-~i~~V~lttrK  145 (255)
T COG1712          69 SPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGAR-VYLPSGAIGGLDALAAARV-G-GIEEVVLTTRK  145 (255)
T ss_pred             CHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcE-EEecCccchhHHHHHHhhc-C-CeeEEEEEeec
Confidence            9999999999999999999999997 554 4567799999988877 6668889998543333321 1 11222222221


Q ss_pred             C-C----CCC-CC----cHHHHHHHHHHHhcCcccccCcccccccccCccccCCceeEEEEEcCCCc-eeEEEEEccCCe
Q 022057          193 P-N----ARD-FP----SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLP-SSTTVYFSRPGE  261 (303)
Q Consensus       193 h-~----K~D-aP----SGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~iv-g~H~V~f~~~~E  261 (303)
                      + .    +.| -+    +|.|-   |+..+++++.+....-+.  +.+  .  +.+.|.=+==|.+- -.|+|..-|...
T Consensus       146 pp~~lg~dl~~~ktVlfeG~a~---eA~k~FPkNiNVAaTlsL--A~~--~--e~v~V~lvaDP~~~~NiHev~v~g~fG  216 (255)
T COG1712         146 PPAELGIDLEDKKTVLFEGSAS---EAVKKFPKNINVAATLSL--AGG--F--ERVKVRLVADPEVDRNIHEVEVRGAFG  216 (255)
T ss_pred             ChHHhCcCcccCceEEEeccHH---HHHHhCcccccHHHHHHh--hcc--c--cceEEEEEeCchhhcceeEEEEEeccc
Confidence            1 1    111 34    78887   444444432222111010  000  0  11111111001111 158999999999


Q ss_pred             EEEEEEec----CCccccHHHHHHHHHHhhcCCCc
Q 022057          262 VYSIKHDI----TDVQSLMPGLILAIRKVVHLKVT  292 (303)
Q Consensus       262 ~iel~H~a----~sR~~Fa~Gal~Aa~~l~~~~~g  292 (303)
                      +++++=+-    .|-++-+.-|.-|.+-|.+..-|
T Consensus       217 ~~~~~~eN~p~~~NPKTSaLaayS~vr~l~~l~~~  251 (255)
T COG1712         217 TFEIKIENVPLPENPKTSALAAYSAVRLLRNLAEG  251 (255)
T ss_pred             eEEEEEecccCCCCcchHHHHHHHHHHHHHHhhhC
Confidence            98887331    12223355677777766665544

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=99.23  E-value=1.8e-11  Score=99.50  Aligned_cols=110  Identities=17%  Similarity=0.211  Sum_probs=83.1

Q ss_pred             cCCcHHHHHHHHHHHhcC---CcEEEEEEecCC-CCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCCch
Q 022057           42 GAVKEIGRAAVIAVTKAR---GMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS  117 (303)
Q Consensus        42 G~~GrMG~~i~~~i~~~~---~~eLvg~vd~~~-~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p~  117 (303)
                      |+ |.||+.+++.+.+.+   +++++++++++. ...+....     ..+...+.+++++++.    .++|||||+|.++
T Consensus         1 G~-G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~dvvVE~t~~~   70 (117)
T PF03447_consen    1 GF-GNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAAS-----FPDEAFTTDLEELIDD----PDIDVVVECTSSE   70 (117)
T ss_dssp             ---SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHH-----HTHSCEESSHHHHHTH----TT-SEEEE-SSCH
T ss_pred             CC-CHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhh-----cccccccCCHHHHhcC----cCCCEEEECCCch
Confidence            77 999999999999876   899999999761 11111111     1245678899999863    4799999999999


Q ss_pred             hHHHHHHHHHHcCCCeEEeCCCC--CHHHHHHHHHHhhhcCCeEEE
Q 022057          118 TVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLI  161 (303)
Q Consensus       118 a~~~~~~~al~~g~~vVigTTG~--~~e~~~~L~~~a~~~~i~vv~  161 (303)
                      .+.+++..++++|++||+...+.  +....++|.++|+++|+.+.+
T Consensus        71 ~~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~~  116 (117)
T PF03447_consen   71 AVAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIYY  116 (117)
T ss_dssp             HHHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEEE
T ss_pred             HHHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEEe
Confidence            99999999999999999987753  336789999999999988765

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>TIGR03855 NAD_NadX aspartate dehydrogenase

Probab=99.23  E-value=1.1e-09  Score=99.81  Aligned_cols=185  Identities=15%  Similarity=0.173  Sum_probs=124.0

Q ss_pred             CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCC
Q 022057           60 GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (303)
Q Consensus        60 ~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG  139 (303)
                      +++|++++|++.  ..+.+++   ..+++++++|++++++     .++|+|+++|++..+.++...++++|+|++|.++|
T Consensus         1 ~~eLvaV~D~~~--e~a~~~a---~~~g~~~~~d~~eLl~-----~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~g   70 (229)
T TIGR03855         1 NFEIAAVYDRNP--KDAKELA---ERCGAKIVSDFDEFLP-----EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVG   70 (229)
T ss_pred             CeEEEEEECCCH--HHHHHHH---HHhCCceECCHHHHhc-----CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCc
Confidence            478999999753  2333344   3567889999999986     47999999999999999999999999999999996


Q ss_pred             -C-CHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhc-cCCCcEEEEEc-cC--CCCCC--C----cHHHHHHH
Q 022057          140 -I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS-FHYKNVEIVES-RP--NARDF--P----SPDATQIA  207 (303)
Q Consensus       140 -~-~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~-~~~~dieIiE~-Hh--~K~Da--P----SGTA~~l~  207 (303)
                       + +.++.++|.++++++|.++++.+++--|.    +..+... .....+.++=. |.  .|.+.  |    +|+|.   
T Consensus        71 Alad~e~~~~l~~aA~~~g~~l~i~sGai~g~----d~l~a~~ig~~~~V~i~~~k~p~~~~~~~~~~~~~f~G~a~---  143 (229)
T TIGR03855        71 ALADRELRERLREVARSSGRKVYIPSGAIGGL----DALKAASLGRIERVVLTTTKPPASLGRDIKEPTTIFEGSAS---  143 (229)
T ss_pred             ccCCHHHHHHHHHHHHhcCCEEEEChHHHHHH----HHHHhcccCCceEEEEEEecChHHhcCCCCCCEEEEEecHH---
Confidence             4 56788999999999999999987443333    3333322 11234444333 43  24322  3    89998   


Q ss_pred             HHHHhcCcccccCcccccccccCccccCCceeEEEEEcCCCce-eEEEEEccCCeEEEEEEe
Q 022057          208 NNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPS-STTVYFSRPGEVYSIKHD  268 (303)
Q Consensus       208 ~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg-~H~V~f~~~~E~iel~H~  268 (303)
                      |++..++...+..-.....+  |.   +..+.+-+.  |++.+ .|+|..-|++.+++++=+
T Consensus       144 ea~~~fP~n~Nva~a~alA~--g~---d~~v~i~ad--p~~~~n~h~i~~~g~~g~~~~~~~  198 (229)
T TIGR03855       144 EAIKLFPANINVAATLSLAA--GF---DAKVEIVAD--PEADRNIHEIFVESDFGEMEIRVE  198 (229)
T ss_pred             HHHHHCCchHHHHHHHHHhc--CC---CcEEEEEEc--CCCCCcEEEEEEEeccEEEEEEEe
Confidence            45544443222111111111  21   123344443  55555 799999999999999844

Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=99.14  E-value=2.4e-10  Score=109.79  Aligned_cols=95  Identities=23%  Similarity=0.260  Sum_probs=75.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh---hcC------------CCCCCeeecCCHHHHHh
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV---CDM------------EQPLEIPVMSDLTMVLG   99 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~---~g~------------~~~~gv~v~~dl~~~l~   99 (303)
                      |+||+|+|+ |+|||.+++.+.++|++||+++.|+..  .....+   .|+            ....+++++.++++++ 
T Consensus         1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~--~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~-   76 (341)
T PRK04207          1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKP--DYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLL-   76 (341)
T ss_pred             CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCCh--HHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhh-
Confidence            689999999 999999999999999999999998532  000000   010            0123577888888887 


Q ss_pred             ccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       100 ~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT  138 (303)
                           .++|+|+|||.+..+.+++..++++|+++|.-.+
T Consensus        77 -----~~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~  110 (341)
T PRK04207         77 -----EKADIVVDATPGGVGAKNKELYEKAGVKAIFQGG  110 (341)
T ss_pred             -----ccCCEEEECCCchhhHHHHHHHHHCCCEEEEcCC
Confidence                 3799999999999999999999999999998654

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=99.10  E-value=2.1e-09  Score=115.40  Aligned_cols=134  Identities=19%  Similarity=0.128  Sum_probs=107.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcE------------EEEEEecCCCCcchhhhhcCCCCC-C---eee-cCCHHHH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGME------------VAGAIDSHSVGEDIGMVCDMEQPL-E---IPV-MSDLTMV   97 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~e------------Lvg~vd~~~~g~d~~~~~g~~~~~-g---v~v-~~dl~~~   97 (303)
                      |.||+|+|| |+||+.+++.+.+.++.+            +|.+.|...  .++..++.   .+ +   +.+ +.|.+++
T Consensus       569 ~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~--~~a~~la~---~~~~~~~v~lDv~D~e~L  642 (1042)
T PLN02819        569 SQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL--KDAKETVE---GIENAEAVQLDVSDSESL  642 (1042)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH--HHHHHHHH---hcCCCceEEeecCCHHHH
Confidence            569999998 999999999999888877            788888653  33333332   12 3   455 6777777


Q ss_pred             HhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHH--HHHH
Q 022057           98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL--LQQA  175 (303)
Q Consensus        98 l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~l--l~~~  175 (303)
                      .+.+   .++|+||..+++..+.+.++.|+++|+|+|+.+  ++.++..+|.+.|+++|++++..-+|..|+.-  .+++
T Consensus       643 ~~~v---~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~m~e~GlDPGid~~lA~~~  717 (1042)
T PLN02819        643 LKYV---SQVDVVISLLPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITILCEMGLDPGIDHMMAMKM  717 (1042)
T ss_pred             HHhh---cCCCEEEECCCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEEEECCccCHHHHHHHHHHH
Confidence            6421   369999999999999999999999999999887  77788899999999999999999999999953  4666


Q ss_pred             HHHh
Q 022057          176 AISA  179 (303)
Q Consensus       176 a~~~  179 (303)
                      ....
T Consensus       718 Id~~  721 (1042)
T PLN02819        718 IDDA  721 (1042)
T ss_pred             HHhh
Confidence            6554

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=99.07  E-value=2.2e-09  Score=100.76  Aligned_cols=133  Identities=14%  Similarity=0.184  Sum_probs=94.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      ++||+|+|+ |+||+.++..+.+.+++++++++|.+.. .+.-.++   .++|++. ++++++++++    .++|+|+++
T Consensus         1 klrVAIIG~-G~IG~~h~~~ll~~~~~elvaV~d~d~e-s~~la~A---~~~Gi~~~~~~~e~ll~~----~dIDaV~ia   71 (285)
T TIGR03215         1 KVKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPE-SDGLARA---RELGVKTSAEGVDGLLAN----PDIDIVFDA   71 (285)
T ss_pred             CcEEEEEeC-cHHHHHHHHHHHhCCCcEEEEEEeCCcc-cHHHHHH---HHCCCCEEECCHHHHhcC----CCCCEEEEC
Confidence            479999997 9999999888888899999999986531 1111223   3577765 5689999864    579999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCCCCC----HHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHH
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVPHIQ----LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS  178 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTTG~~----~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~  178 (303)
                      |++..+.+++..++++|+++++.|+-+.    ....+ +++..+..++.++-.+|=+ .+-++.-+-+.
T Consensus        72 Tp~~~H~e~a~~al~aGk~VIdekPa~~~plvvp~VN-~~~~~~~~~~~iv~c~~~a-tip~~~al~r~  138 (285)
T TIGR03215        72 TSAKAHARHARLLAELGKIVIDLTPAAIGPYVVPAVN-LDEHLDAPNVNMVTCGGQA-TIPIVAAISRV  138 (285)
T ss_pred             CCcHHHHHHHHHHHHcCCEEEECCccccCCccCCCcC-HHHHhcCcCCCEEEcCcHH-HHHHHHHHHHh
Confidence            9999999999999999999999998541    00111 2333343456766666655 34344434433

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=98.97  E-value=7.5e-09  Score=97.70  Aligned_cols=152  Identities=15%  Similarity=0.177  Sum_probs=103.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      ++||+|+|+ |++|+.+...+.+.++++|++++|.+.. .+....+   .++|++. +++++++++.- ...++|+|+|+
T Consensus         4 klrVAIIGt-G~IGt~hm~~l~~~~~velvAVvdid~e-s~gla~A---~~~Gi~~~~~~ie~LL~~~-~~~dIDiVf~A   77 (302)
T PRK08300          4 KLKVAIIGS-GNIGTDLMIKILRSEHLEPGAMVGIDPE-SDGLARA---RRLGVATSAEGIDGLLAMP-EFDDIDIVFDA   77 (302)
T ss_pred             CCeEEEEcC-cHHHHHHHHHHhcCCCcEEEEEEeCChh-hHHHHHH---HHcCCCcccCCHHHHHhCc-CCCCCCEEEEC
Confidence            589999996 9999998888888899999999987531 1111222   3578876 58999998510 00368999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCCCC---------CHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCC
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVPHI---------QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYK  184 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTTG~---------~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~  184 (303)
                      |+++.+.++...++++|++++..|+-+         +.+      ++....++.++-.||=+.     ..++..+.+ ..
T Consensus        78 T~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~------~~~~~~~~~iia~p~~at-----i~~v~Al~~-v~  145 (302)
T PRK08300         78 TSAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLD------EHLDAPNVNMVTCGGQAT-----IPIVAAVSR-VA  145 (302)
T ss_pred             CCHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHH------HHhcccCCCEEECccHHH-----HHHHHHhcc-cC
Confidence            999999999999999999999999854         332      224434577777666443     222223333 23


Q ss_pred             cEEEEEccC--CCCCCCcHHHH
Q 022057          185 NVEIVESRP--NARDFPSPDAT  204 (303)
Q Consensus       185 dieIiE~Hh--~K~DaPSGTA~  204 (303)
                      ++++-|...  .-+-+..||=.
T Consensus       146 ~~~~~eIvat~~s~s~g~gtr~  167 (302)
T PRK08300        146 PVHYAEIVASIASKSAGPGTRA  167 (302)
T ss_pred             cCceeeeeeeehhhccCCcccc
Confidence            445566543  33444556543

>PRK06392 homoserine dehydrogenase; Provisional

Probab=98.93  E-value=1.4e-08  Score=97.07  Aligned_cols=134  Identities=19%  Similarity=0.178  Sum_probs=98.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhc-------CCcEEEEEEecC-----CCCcchhhhhcCCCC--CCeeecC--CHHHHHh
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKA-------RGMEVAGAIDSH-----SVGEDIGMVCDMEQP--LEIPVMS--DLTMVLG   99 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~-------~~~eLvg~vd~~-----~~g~d~~~~~g~~~~--~gv~v~~--dl~~~l~   99 (303)
                      |||+|+|+ |.+|+.+++.+.+.       .+++|+++.|+.     ..|-|..++.....+  ......+  +++++++
T Consensus         1 mrVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~   79 (326)
T PRK06392          1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE   79 (326)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence            58999998 99999999998764       578999999863     234444443211111  1111112  6777775


Q ss_pred             ccccCCCccEEEEcCCc-h---hHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH
Q 022057          100 SISQSKARAVVIDFTDA-S---TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (303)
Q Consensus       100 ~~~~~~~~DVvIDfT~p-~---a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~  175 (303)
                           .++||+||+|.. +   ...++++.++++|+|||+..-|.-....++|.++|+++++.+.+.++..=|.-++.-+
T Consensus        80 -----~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~~~  154 (326)
T PRK06392         80 -----IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLFSLR  154 (326)
T ss_pred             -----CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccchhhhh
Confidence                 589999999942 2   3578889999999999987666444677899999999999999999888887766644

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=98.92  E-value=4.8e-09  Score=99.66  Aligned_cols=122  Identities=20%  Similarity=0.208  Sum_probs=89.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCC-----------------CCCCeeecCCHHH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDME-----------------QPLEIPVMSDLTM   96 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~~g~~-----------------~~~gv~v~~dl~~   96 (303)
                      ++||+++|+ |.||+-++..+...|+++++++.|.+. ..+++-+.+|+.                 +...+.+++|.+.
T Consensus        17 PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~   95 (438)
T COG4091          17 PIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAEL   95 (438)
T ss_pred             ceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhh
Confidence            699999998 999999999999999999999988531 111111112211                 2345677889999


Q ss_pred             HHhccccCCCccEEEEcC-CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057           97 VLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus        97 ~l~~~~~~~~~DVvIDfT-~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                      ++..    ...|||||.| .|+...++...++.||||+|+-..-.+---=.-|++.+.+  ..++||.
T Consensus        96 i~~~----~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~--~GviyS~  157 (438)
T COG4091          96 IIAN----DLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADA--AGVIYSG  157 (438)
T ss_pred             hhcC----CcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhh--cCeEEec
Confidence            8875    6789999999 8999999999999999999986542221111246777888  5667744

>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]

Probab=98.92  E-value=2.1e-08  Score=92.84  Aligned_cols=157  Identities=20%  Similarity=0.231  Sum_probs=112.4

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec--CCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~--~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |.|++.+.|. |..|...++.+.++|+++|||++++  .+.|+|+++++|+. ..||...++++..++.    ..-+++.
T Consensus         1 m~~~vvqyGt-G~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~-dlgV~a~~~~~avlAt----l~~~~~y   74 (350)
T COG3804           1 MSLRVVQYGT-GSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLP-DLGVIATNSIDAVLAT----LADAVIY   74 (350)
T ss_pred             CCceeEEecc-chHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCC-CceeEeecccccceec----cccceee
Confidence            5689999995 9999999999999999999999996  46799999999996 5999999999988863    2334555


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCC------CCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCc
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVP------HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKN  185 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTT------G~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~d  185 (303)
                      +--.|+  .+....+++.|+|||+--+      +..++..+++.++|.++|..-++..-.-.|.. ...+.-.++..+..
T Consensus        75 ~~~~~~--~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~gtGI~pGF~-~dllpmlLsgpcte  151 (350)
T COG3804          75 APLLPS--VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNATLHGTGIGPGFV-TDLLPMLLSGPCTE  151 (350)
T ss_pred             ecccch--HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCceEEecccCccHH-HHHHHHHHcccccc
Confidence            555564  7888899999999996422      34577888899999998886666444444432 12222233444444


Q ss_pred             EEEEEc---cC-CCCCCC
Q 022057          186 VEIVES---RP-NARDFP  199 (303)
Q Consensus       186 ieIiE~---Hh-~K~DaP  199 (303)
                      +|-+-.   -. .+.|+|
T Consensus       152 ve~ir~~e~~d~~~y~e~  169 (350)
T COG3804         152 VEFIRSEEFSDLRSYGEP  169 (350)
T ss_pred             eEEEeeeehhhHhhcCCc
Confidence            444322   22 366666

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=98.76  E-value=4.7e-08  Score=94.00  Aligned_cols=102  Identities=19%  Similarity=0.105  Sum_probs=74.5

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      ||+||+|+|++|.+|+.+++.+.+.|+++|+++.++...++...+..+.....-...+.++++...     .++|+|+.+
T Consensus         1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~vD~Vf~a   75 (343)
T PRK00436          1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEIL-----AGADVVFLA   75 (343)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHh-----cCCCEEEEC
Confidence            679999999999999999999999999999999986444444332211000000113445544322     479999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTTG~  140 (303)
                      ++++.+.+.+..++++|++||--+..|
T Consensus        76 lP~~~~~~~v~~a~~aG~~VID~S~~f  102 (343)
T PRK00436         76 LPHGVSMDLAPQLLEAGVKVIDLSADF  102 (343)
T ss_pred             CCcHHHHHHHHHHHhCCCEEEECCccc
Confidence            999999999999999999998766554

>PRK06813 homoserine dehydrogenase; Validated

Probab=98.73  E-value=1.7e-07  Score=90.40  Aligned_cols=138  Identities=14%  Similarity=0.117  Sum_probs=94.4

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcC---------CcEEEEEEecCC-----CCcchhhhhcCCC-CCCe--eecCCHHH
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHS-----VGEDIGMVCDMEQ-PLEI--PVMSDLTM   96 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~---------~~eLvg~vd~~~-----~g~d~~~~~g~~~-~~gv--~v~~dl~~   96 (303)
                      |+++|+|+|+ |.+|+.+++.+.++.         +++|+++.+++.     .|-+...+..... ....  ....+.++
T Consensus         1 ~~i~I~liG~-G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~   79 (346)
T PRK06813          1 MKIKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEE   79 (346)
T ss_pred             CeeEEEEEec-ChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHH
Confidence            5799999998 999999999886542         578999988631     1222222211000 0000  01122333


Q ss_pred             HHhccccCCCccEEEEcCCc-----hhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHH
Q 022057           97 VLGSISQSKARAVVIDFTDA-----STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (303)
Q Consensus        97 ~l~~~~~~~~~DVvIDfT~p-----~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~l  171 (303)
                      .+..   ..+.||+||.|..     +..+++++.++++|+|||...-+.-....++|.++|+++|+.+.|-++..=|+-+
T Consensus        80 ~~~~---~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPi  156 (346)
T PRK06813         80 RATD---NISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPT  156 (346)
T ss_pred             HhcC---CCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccch
Confidence            3321   1258999999864     5678999999999999997665554556788999999999999999988888876


Q ss_pred             HHHH
Q 022057          172 LQQA  175 (303)
Q Consensus       172 l~~~  175 (303)
                      +.-+
T Consensus       157 I~~l  160 (346)
T PRK06813        157 LDIG  160 (346)
T ss_pred             HHHH
Confidence            6555

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=98.72  E-value=1.1e-07  Score=77.92  Aligned_cols=97  Identities=15%  Similarity=0.198  Sum_probs=72.6

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCCCCC-CeeecC-CHHHHHhccccCCCccEEEEc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQPL-EIPVMS-DLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~~g~~~~~-gv~v~~-dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      ||+|+|+||.+|+.+++.+.++|+++++.++.++. .|+............ ...+.+ +.+++       .++|+|+.+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~Dvvf~a   73 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-------SDVDVVFLA   73 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-------TTESEEEE-
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-------hcCCEEEec
Confidence            79999999999999999999999999999999765 677776554210011 223333 33333       489999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTTG~  140 (303)
                      ++.+...+....+++.|+.||--++.+
T Consensus        74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~  100 (121)
T PF01118_consen   74 LPHGASKELAPKLLKAGIKVIDLSGDF  100 (121)
T ss_dssp             SCHHHHHHHHHHHHHTTSEEEESSSTT
T ss_pred             CchhHHHHHHHHHhhCCcEEEeCCHHH
Confidence            988899999999999999776544444

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.70  E-value=1.8e-07  Score=91.10  Aligned_cols=210  Identities=17%  Similarity=0.095  Sum_probs=125.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCC-C--CCCeeecCCHHHHHhccccCCCccEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDME-Q--PLEIPVMSDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~~g~~-~--~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (303)
                      |+||.|+|| |++|+.++..++++.+.++.. .|++. .-.++....+.. +  ..++.-.+.+.++|+      +.|+|
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~i-AdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~------~~d~V   72 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTI-ADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK------DFDLV   72 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCCceEEE-EeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh------cCCEE
Confidence            689999999 999999999999888787775 44431 111111111000 0  111112335666774      56999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH-HHH-HHHHHHhccCCCcEEE
Q 022057          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS-ILL-QQAAISASFHYKNVEI  188 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv-~ll-~~~a~~~~~~~~dieI  188 (303)
                      |.+-+|......++.|+++|+++|-  |...++...++.+.|+++|+.++...-|+.|+ |++ .++++.+-+...++.|
T Consensus        73 In~~p~~~~~~i~ka~i~~gv~yvD--ts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~~~i~si~i  150 (389)
T COG1748          73 INAAPPFVDLTILKACIKTGVDYVD--TSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELFDEIESIDI  150 (389)
T ss_pred             EEeCCchhhHHHHHHHHHhCCCEEE--cccCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHhhccccEEEE
Confidence            9999999999999999999999984  33333334789999999999999999999999 444 5555555322233334


Q ss_pred             EEccC-CCCCCCcHHHHHH--HHHHHhcCc--ccccCcccccccccCccccCCceeEEEEEc---CCCceeEEEEEccCC
Q 022057          189 VESRP-NARDFPSPDATQI--ANNLSNLGQ--IYNREDISTDVKARGQVLGEDGVRVHSMVL---PGLPSSTTVYFSRPG  260 (303)
Q Consensus       189 iE~Hh-~K~DaPSGTA~~l--~~~i~~~~~--~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~---g~ivg~H~V~f~~~~  260 (303)
                      .--+- ...|-|=+=|...  -..+.+...  .+-.+|         . +  .+++-.+.|.   ..++|.+.+++-..+
T Consensus       151 y~g~~g~~~~~~l~ya~tws~e~~l~e~~~p~~~~~~G---------k-~--~~v~~~~~~~~~~~~~~G~~~~y~~~~~  218 (389)
T COG1748         151 YVGGLGEHGDNPLGYATTWSPEINLREYTRPARYWENG---------K-W--VEVDPLEEREVFEFPVIGYGDVYAFYHD  218 (389)
T ss_pred             EEecCCCCCCCCccceeeecHHHhHHHhcCceEEEeCC---------E-E--EEecCcccccccccCCCCceeEEecCCc
Confidence            43332 2233332222211  011222110  000111         0 0  1223333333   667888999998888


Q ss_pred             eEEEEE
Q 022057          261 EVYSIK  266 (303)
Q Consensus       261 E~iel~  266 (303)
                      |..+|-
T Consensus       219 el~sL~  224 (389)
T COG1748         219 ELRSLV  224 (389)
T ss_pred             cHHHHH
Confidence            876543

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=98.66  E-value=3.9e-07  Score=86.64  Aligned_cols=122  Identities=16%  Similarity=0.206  Sum_probs=97.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ..||.|-|.||+-|+.+.+...+. +.++|+.+.+..-|+...       ..|+|+|++++|+.+.    .++|+++.|.
T Consensus        29 ~t~v~vqGitg~~g~~h~~~~~~y-gt~iv~GV~Pgkgg~~v~-------~~Gvpvy~sv~ea~~~----~~~D~avI~V   96 (317)
T PTZ00187         29 NTKVICQGITGKQGTFHTEQAIEY-GTKMVGGVNPKKAGTTHL-------KHGLPVFATVKEAKKA----TGADASVIYV   96 (317)
T ss_pred             CCeEEEecCCChHHHHHHHHHHHh-CCcEEEEECCCCCCceEe-------cCCccccCCHHHHhcc----cCCCEEEEec
Confidence            368999999999999999988754 889999998865333211       1389999999999852    3599999999


Q ss_pred             CchhHHHHHHHHHHcCCCeEEe-CCCCCHHHHHHHHHHhh-hcCCeEEEcCCCcHHHH
Q 022057          115 DASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCD-KASMGCLIAPTLSIGSI  170 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVig-TTG~~~e~~~~L~~~a~-~~~i~vv~a~N~SiGv~  170 (303)
                      +|..+.+.+..|.++|++.++- |.|+.+.+..+++++++ ++++. ++.|| ++|+.
T Consensus        97 Pa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~r-liGPN-c~Gii  152 (317)
T PTZ00187         97 PPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKTR-LIGPN-CPGII  152 (317)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCCE-EECCC-CceEE
Confidence            9999999999999999988655 45998776667777765 45665 88898 67764

>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha

Probab=98.64  E-value=5.6e-07  Score=85.08  Aligned_cols=119  Identities=17%  Similarity=0.240  Sum_probs=94.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      -||.|.|.+|+-|..+.+...+. +.++++.+.+..-+   .      .-.|+|+|.+++++-+.    .++|++|-+.+
T Consensus        13 ~~v~~~gi~~~~~~~~~~~~~~y-gt~~~~gV~p~~~~---~------~i~G~~~y~sv~dlp~~----~~~DlAvI~vP   78 (300)
T PLN00125         13 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG---T------EHLGLPVFNTVAEAKAE----TKANASVIYVP   78 (300)
T ss_pred             CeEEEecCCCHHHHHHHHHHHHh-CCcEEEEECCCCCC---c------eEcCeeccCCHHHHhhc----cCCCEEEEecC
Confidence            68999999999999999987765 89999999875211   1      23588999999999741    13799999999


Q ss_pred             chhHHHHHHHHHHcCCC-eEEeCCCCCHHH-HHHHHHHhhhcCCeEEEcCCCcHHHH
Q 022057          116 ASTVYDNVKQATAFGMR-SVVYVPHIQLET-VSALSAFCDKASMGCLIAPTLSIGSI  170 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~-vVigTTG~~~e~-~~~L~~~a~~~~i~vv~a~N~SiGv~  170 (303)
                      ++.+.+.++.|.+.|++ +||-|.||.+.. .+.+.++++++++. ++.|| ++|+.
T Consensus        79 a~~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~gir-viGPN-c~Gii  133 (300)
T PLN00125         79 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTR-LIGPN-CPGII  133 (300)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCE-EECCC-Cceee
Confidence            99999999999999988 556677998653 35566678888877 77888 66663

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=98.61  E-value=3.1e-07  Score=85.23  Aligned_cols=115  Identities=19%  Similarity=0.327  Sum_probs=98.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .-||.|-|.+|++|+.+.+...+. +..+|+.+.+.+.|..         -.++|+|++++|++++    ..+|+.+.|-
T Consensus         8 ~tkvivqGitg~~gtfh~~~~l~y-Gt~~V~GvtPgkgG~~---------~~g~PVf~tV~EA~~~----~~a~~svI~V   73 (293)
T COG0074           8 DTKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKGGQT---------ILGLPVFNTVEEAVKE----TGANASVIFV   73 (293)
T ss_pred             CCeEEEeccccccchHHHHHHHHh-CCceeecccCCCCceE---------EcCccHHHHHHHHHHh----hCCCEEEEec
Confidence            358999999999999999999987 9999999988654432         3468999999999985    6899999999


Q ss_pred             CchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC
Q 022057          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT  164 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N  164 (303)
                      +|..+.+.+..|+++|+++|+.-| |....+.-++.+.+++.++. ++.||
T Consensus        74 p~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~-iiGPn  123 (293)
T COG0074          74 PPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTR-LIGPN  123 (293)
T ss_pred             CcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcCCE-EECCC
Confidence            999999999999999998887766 88888888899999998854 66777

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=98.59  E-value=1.1e-06  Score=82.72  Aligned_cols=119  Identities=17%  Similarity=0.280  Sum_probs=95.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .-||.|.|.+|++|+.+.+.+... ++.+++.+.+... .  .      .-.|+|.|.+++++-+.    .++|++|-+.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~-g~~~v~~V~p~~~-~--~------~v~G~~~y~sv~dlp~~----~~~Dlavi~v   71 (286)
T TIGR01019         6 DTKVIVQGITGSQGSFHTEQMLAY-GTNIVGGVTPGKG-G--T------TVLGLPVFDSVKEAVEE----TGANASVIFV   71 (286)
T ss_pred             CCcEEEecCCcHHHHHHHHHHHhC-CCCEEEEECCCCC-c--c------eecCeeccCCHHHHhhc----cCCCEEEEec
Confidence            468999999999999999988755 5668888876421 1  1      23588999999998741    1389999999


Q ss_pred             CchhHHHHHHHHHHcCCCeE-EeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          115 DASTVYDNVKQATAFGMRSV-VYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vV-igTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      +++.+.+.++.|.+.|++.+ |-|.||.+...++|.+.|++.|+. ++.|| ++|+
T Consensus        72 pa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~gir-ilGPN-c~Gi  125 (286)
T TIGR01019        72 PAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTR-LIGPN-CPGI  125 (286)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EECCC-CceE
Confidence            99999999999999997554 667799877668899999999988 67888 5666

ATP citrate lyases appear to form an outgroup.

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=98.58  E-value=1.3e-06  Score=82.45  Aligned_cols=117  Identities=19%  Similarity=0.311  Sum_probs=93.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCC--ccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA--RAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~--~DVvID  112 (303)
                      +-||.|.|.+|++|+.+.+.+.+. +++.+..+.+.. +.  .      .-.|++.|.+++++-+      .  +|++|-
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~-g~~~v~pVnp~~-~~--~------~v~G~~~y~sv~dlp~------~~~~DlAvi   71 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAY-GTNIVGGVTPGK-GG--T------TVLGLPVFNTVAEAVE------ATGANASVI   71 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHC-CCCEEEEECCCC-CC--C------eEeCeeccCCHHHHhh------ccCCCEEEE
Confidence            468999999999999999998864 444565566541 01  1      2357899999999973      4  899999


Q ss_pred             cCCchhHHHHHHHHHHcCCCe-EEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          113 FTDASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~v-VigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      +.+++.+.+.++.|.+.|++. ||=|.||..++.++|.++|++.|++ ++.|| ++|+
T Consensus        72 ~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~gir-vlGPN-c~Gi  127 (291)
T PRK05678         72 YVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTR-LIGPN-CPGI  127 (291)
T ss_pred             EcCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EECCC-CCcc
Confidence            999999999999999999766 5667799876567899999999988 77898 5576

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.57  E-value=5e-07  Score=85.75  Aligned_cols=208  Identities=19%  Similarity=0.137  Sum_probs=118.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEecCC-------CCcc--hhhhhcC---------CCCCCeeecCCHH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHS-------VGED--IGMVCDM---------EQPLEIPVMSDLT   95 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~~~-------~g~d--~~~~~g~---------~~~~gv~v~~dl~   95 (303)
                      |+||+|+|+ ||+||.+++++.+++ ++|+||+-|...       .-.|  -+.+.+.         ....+++++.+.+
T Consensus         1 ~ikV~INGf-GrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~   79 (335)
T COG0057           1 MIKVAINGF-GRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERD   79 (335)
T ss_pred             CcEEEEecC-cHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCC
Confidence            589999998 999999999999998 799999988210       0000  0111100         0123567766655


Q ss_pred             -HHHhccccCCCccEEEEcCCchhHHHHHHHHHHcC--CCeEEeCCCCCHHHHHH-----HHHHhhhcCCeEEEcCCCcH
Q 022057           96 -MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG--MRSVVYVPHIQLETVSA-----LSAFCDKASMGCLIAPTLSI  167 (303)
Q Consensus        96 -~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g--~~vVigTTG~~~e~~~~-----L~~~a~~~~i~vv~a~N~Si  167 (303)
                       +.|.-  .+...|+|||+|.--...+.....++.|  +.|+++-++-++  ...     ..+.-+. +-.  +-+|-|=
T Consensus        80 p~~l~w--~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~--~~~vv~gvn~~~~~~-~~~--iVsnaSC  152 (335)
T COG0057          80 PANLPW--ADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDD--VATVVYGVNHNYYDA-GHT--IVSNASC  152 (335)
T ss_pred             hHHCCc--cccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCC--ccEEEEeccccccCC-CCc--EEEEccc
Confidence             55532  1235789999998777888888777776  777787665431  011     0011010 112  2366677


Q ss_pred             HHHHHHHHHHHhccCCCcEE---EEEccC----C-CCCCCcHHHHHHHHHHHhcCcccccCcccccccccCcccc--CCc
Q 022057          168 GSILLQQAAISASFHYKNVE---IVESRP----N-ARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLG--EDG  237 (303)
Q Consensus       168 Gv~ll~~~a~~~~~~~~die---IiE~Hh----~-K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~--~~~  237 (303)
                      --|=|-.+++.+.+. |.||   +.=.|.    + -+|.|+-- ++=++++....-+ ..   ++....=+-++.  ++.
T Consensus       153 TTNcLap~~kvl~d~-fGI~~g~mTtVh~~T~dQ~~~dgph~~-~rr~raa~~niIp-~s---TgaAkav~~VlP~L~gK  226 (335)
T COG0057         153 TTNCLAPVAKVLNDA-FGIEKGLMTTVHAYTNDQKLVDGPHKD-LRRARAAALNIIP-TS---TGAAKAVGLVLPELKGK  226 (335)
T ss_pred             hhhhhHHHHHHHHHh-cCeeEEEEEEEEcccCCCccccCcccc-hhhhccccCCCCc-CC---CcchhhhhhhCcccCCc
Confidence            777788888887654 4554   333373    3 58889655 4444443331100 00   000000011111  156


Q ss_pred             eeEEEEEcCCCce-eEEEEE
Q 022057          238 VRVHSMVLPGLPS-STTVYF  256 (303)
Q Consensus       238 i~ihS~R~g~ivg-~H~V~f  256 (303)
                      +.-+|+|.|..-+ -|.+.+
T Consensus       227 l~g~A~RVPt~~vs~~dl~v  246 (335)
T COG0057         227 LTGMAIRVPTPNVSVVDLTV  246 (335)
T ss_pred             eeeEEEEecCCCcEEEEEEE
Confidence            8889999998866 455443

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.50  E-value=1e-06  Score=85.46  Aligned_cols=132  Identities=18%  Similarity=0.164  Sum_probs=88.9

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----cC---CHHHHHhccccCCCccEE
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MS---DLTMVLGSISQSKARAVV  110 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~~---dl~~~l~~~~~~~~~DVv  110 (303)
                      |.|+|+ |.||+.+++.+.+..+.+-+.+.|++.  ..+..++.......+..    ..   ++++++      .+.|+|
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~------~~~dvV   71 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNP--EKAERLAEKLLGDRVEAVQVDVNDPESLAELL------RGCDVV   71 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSH--HHHHHHHT--TTTTEEEEE--TTTHHHHHHHH------TTSSEE
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCH--HHHHHHHhhccccceeEEEEecCCHHHHHHHH------hcCCEE
Confidence            789999 999999999999888874444566542  22222221000112211    12   345566      468999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH-HHH-HHHHHHhc
Q 022057          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS-ILL-QQAAISAS  180 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv-~ll-~~~a~~~~  180 (303)
                      |++..|......++.|+++|+|.|-  |.+-.++..++.+.++++|+.++.+.-|..|. |+| .++++.+.
T Consensus        72 in~~gp~~~~~v~~~~i~~g~~yvD--~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~~~~~~~~  141 (386)
T PF03435_consen   72 INCAGPFFGEPVARACIEAGVHYVD--TSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLARYAADELD  141 (386)
T ss_dssp             EE-SSGGGHHHHHHHHHHHT-EEEE--SS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHHHHHHHHH
T ss_pred             EECCccchhHHHHHHHHHhCCCeec--cchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHHHHHHHhh
Confidence            9999999889999999999999997  55434567889999999999999999999999 444 66677776

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=98.46  E-value=1.5e-06  Score=83.07  Aligned_cols=134  Identities=16%  Similarity=0.114  Sum_probs=94.4

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhc---------CCcEEEEEEecCC--C-CcchhhhhcCCCCCCeeecCCH-----HH
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHS--V-GEDIGMVCDMEQPLEIPVMSDL-----TM   96 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~---------~~~eLvg~vd~~~--~-g~d~~~~~g~~~~~gv~v~~dl-----~~   96 (303)
                      |++||+|+|. |.+|+.+++.+.++         .+++++++.+++.  . +.+...       . -...++.     .+
T Consensus         2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~   72 (333)
T COG0460           2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLN-------A-EVWTTDGALSLGDE   72 (333)
T ss_pred             ceEEEEEEcc-CchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccc-------h-hhheecccccccHh
Confidence            4699999997 99999999998874         3678899998742  1 111110       0 1112333     44


Q ss_pred             HHhccccCCCccEEEEcCCc--hhH--HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHH
Q 022057           97 VLGSISQSKARAVVIDFTDA--STV--YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (303)
Q Consensus        97 ~l~~~~~~~~~DVvIDfT~p--~a~--~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll  172 (303)
                      ++..    .+.|++|+.+..  +..  .++++.++++|+|||..--+.-.....+|.++|+++|+.+.|=++-.=|+-++
T Consensus        73 ~~~~----~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI  148 (333)
T COG0460          73 VLLD----EDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPII  148 (333)
T ss_pred             hhcc----ccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcchH
Confidence            4432    688999997643  333  49999999999999965556555678999999999999999988877777655


Q ss_pred             HHHHHHhc
Q 022057          173 QQAAISAS  180 (303)
Q Consensus       173 ~~~a~~~~  180 (303)
                      .-+-..++
T Consensus       149 ~~lr~~l~  156 (333)
T COG0460         149 KLLRELLA  156 (333)
T ss_pred             HHHHhhcc
Confidence            44444443

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=98.40  E-value=2.8e-06  Score=69.43  Aligned_cols=109  Identities=20%  Similarity=0.310  Sum_probs=76.6

Q ss_pred             eEEEEcCC---cHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        37 kV~V~G~~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      +|+|+|++   ++.|..+.+.+.+ .++++..+ ++..     ++      -.|.++|.++++ ..     ..+|+++-|
T Consensus         2 siAVvGaS~~~~~~g~~v~~~l~~-~G~~v~~V-np~~-----~~------i~G~~~y~sl~e-~p-----~~iDlavv~   62 (116)
T PF13380_consen    2 SIAVVGASDNPGKFGYRVLRNLKA-AGYEVYPV-NPKG-----GE------ILGIKCYPSLAE-IP-----EPIDLAVVC   62 (116)
T ss_dssp             EEEEET--SSTTSHHHHHHHHHHH-TT-EEEEE-STTC-----SE------ETTEE-BSSGGG-CS-----ST-SEEEE-
T ss_pred             EEEEEcccCCCCChHHHHHHHHHh-CCCEEEEE-CCCc-----eE------ECcEEeeccccC-CC-----CCCCEEEEE
Confidence            69999976   8899999999987 77888764 4431     21      246789999998 33     589999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      ++|+...+.++.|.+.|+.-|+-.+|-   ..+++.+++++.|++ ++.|| ++|+
T Consensus        63 ~~~~~~~~~v~~~~~~g~~~v~~~~g~---~~~~~~~~a~~~gi~-vigp~-C~gv  113 (116)
T PF13380_consen   63 VPPDKVPEIVDEAAALGVKAVWLQPGA---ESEELIEAAREAGIR-VIGPN-CLGV  113 (116)
T ss_dssp             S-HHHHHHHHHHHHHHT-SEEEE-TTS-----HHHHHHHHHTT-E-EEESS--HHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEEcch---HHHHHHHHHHHcCCE-EEeCC-cceE
Confidence            999999999999999999999988883   235688889998888 44555 6665

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=98.38  E-value=2.7e-06  Score=66.99  Aligned_cols=90  Identities=23%  Similarity=0.310  Sum_probs=71.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      +-||+|+|+ |++|+.++.......++++++++|.+.  .+.++     .-.++|+|.+++++.+.    .++|+.|-+.
T Consensus         3 ~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~--~~~G~-----~i~gipV~~~~~~l~~~----~~i~iaii~V   70 (96)
T PF02629_consen    3 KTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDP--EKIGK-----EIGGIPVYGSMDELEEF----IEIDIAIITV   70 (96)
T ss_dssp             TEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECT--TTTTS-----EETTEEEESSHHHHHHH----CTTSEEEEES
T ss_pred             CCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCC--CccCc-----EECCEEeeccHHHhhhh----hCCCEEEEEc
Confidence            478999998 999999887677788999999999653  22222     23479999999999864    2499999999


Q ss_pred             CchhHHHHHHHHHHcCCCeEEe
Q 022057          115 DASTVYDNVKQATAFGMRSVVY  136 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVig  136 (303)
                      +++.+.+.+..++++|+..|+-
T Consensus        71 P~~~a~~~~~~~~~~gIk~i~n   92 (96)
T PF02629_consen   71 PAEAAQEVADELVEAGIKGIVN   92 (96)
T ss_dssp             -HHHHHHHHHHHHHTT-SEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEE
Confidence            9999999999999999887753

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.38  E-value=2.7e-06  Score=73.10  Aligned_cols=114  Identities=18%  Similarity=0.133  Sum_probs=76.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      |+||+++|. |+||+.+++.+. ..+++|. ++|++.  .....+.    ..++...+|++++.+      .+|+|+-+-
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~-~~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~s~~e~~~------~~dvvi~~v   65 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLA-KAGYEVT-VYDRSP--EKAEALA----EAGAEVADSPAEAAE------QADVVILCV   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHH-HTTTEEE-EEESSH--HHHHHHH----HTTEEEESSHHHHHH------HBSEEEE-S
T ss_pred             CCEEEEEch-HHHHHHHHHHHH-hcCCeEE-eeccch--hhhhhhH----HhhhhhhhhhhhHhh------cccceEeec
Confidence            689999997 999999999987 4688876 578642  2233333    346888899999985      689998765


Q ss_pred             C-chhHHHHHHH--HHH--cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057          115 D-ASTVYDNVKQ--ATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus       115 ~-p~a~~~~~~~--al~--~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                      + ++++.+.+..  .+.  ..-.+++-++..++++..++.+.+++.|+..+=+|
T Consensus        66 ~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap  119 (163)
T PF03446_consen   66 PDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAP  119 (163)
T ss_dssp             SSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred             ccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeee
Confidence            4 4556666554  333  22345666677778888899998888887766555

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=98.30  E-value=3.8e-06  Score=80.99  Aligned_cols=98  Identities=17%  Similarity=0.184  Sum_probs=70.2

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCC------C-CCCeeec-CCHHHHHhccccC
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDME------Q-PLEIPVM-SDLTMVLGSISQS  104 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~-vd~~~~g~d~~~~~g~~------~-~~gv~v~-~dl~~~l~~~~~~  104 (303)
                      ||+||+|+|++|.+|+.+++.+..+|+++|+++ .+....|++...+.+..      . .....+. .+.+++       
T Consensus         2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------   74 (349)
T PRK08664          2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-------   74 (349)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-------
Confidence            469999999999999999999999999999998 44444555554322110      0 0112221 234433       


Q ss_pred             CCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       105 ~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT  138 (303)
                      .++|+|+++++.+...++++.+.++|+.+|.-+.
T Consensus        75 ~~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~  108 (349)
T PRK08664         75 DDVDIVFSALPSDVAGEVEEEFAKAGKPVFSNAS  108 (349)
T ss_pred             cCCCEEEEeCChhHHHHHHHHHHHCCCEEEECCc
Confidence            3799999888888889999999999999887554

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.28  E-value=1.1e-05  Score=73.18  Aligned_cols=121  Identities=11%  Similarity=0.063  Sum_probs=75.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ++||+|+|+ |+||+.++..+.+..  +.+-+.+++++. ......+.   ..+++.++.|++++++      ++|+||-
T Consensus         4 ~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~------~~DiVii   72 (245)
T PRK07634          4 KHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSN-VEKLDQLQ---ARYNVSTTTDWKQHVT------SVDTIVL   72 (245)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCC-HHHHHHHH---HHcCcEEeCChHHHHh------cCCEEEE
Confidence            479999998 999999999887653  344233344321 12223333   2456777888888884      7999999


Q ss_pred             cCCchhHHHHHHHHHH--cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       113 fT~p~a~~~~~~~al~--~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      .++|..+.+.+.....  .+..+|.-+-|++.+.+   ++.......-+..-||+..-+
T Consensus        73 avp~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l---~~~~~~~~~v~r~~Pn~a~~v  128 (245)
T PRK07634         73 AMPPSAHEELLAELSPLLSNQLVVTVAAGIGPSYL---EERLPKGTPVAWIMPNTAAEI  128 (245)
T ss_pred             ecCHHHHHHHHHHHHhhccCCEEEEECCCCCHHHH---HHHcCCCCeEEEECCcHHHHH
Confidence            9999988888776543  24434444448887654   443322111223447776554

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.28  E-value=5.8e-06  Score=76.08  Aligned_cols=101  Identities=10%  Similarity=0.053  Sum_probs=68.9

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ||+||+|+|+ |.||+.++..+.+.. ...-+.+++++.  .....+.   ..+++.+..+.++++      .++|+||-
T Consensus         1 ~mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~--~~~~~~~---~~~g~~~~~~~~~~~------~~advVil   68 (267)
T PRK11880          1 MMKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSP--EKRAALA---EEYGVRAATDNQEAA------QEADVVVL   68 (267)
T ss_pred             CCCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCH--HHHHHHH---HhcCCeecCChHHHH------hcCCEEEE
Confidence            6889999998 999999999887542 123455677642  2222222   234666777888877      47899999


Q ss_pred             cCCchhHHHHHHHHHHc-CCCeEEeCCCCCHHHHH
Q 022057          113 FTDASTVYDNVKQATAF-GMRSVVYVPHIQLETVS  146 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~-g~~vVigTTG~~~e~~~  146 (303)
                      ++.|..+.+.++.+..+ +..+|.-+.|.+.++++
T Consensus        69 ~v~~~~~~~v~~~l~~~~~~~vvs~~~gi~~~~l~  103 (267)
T PRK11880         69 AVKPQVMEEVLSELKGQLDKLVVSIAAGVTLARLE  103 (267)
T ss_pred             EcCHHHHHHHHHHHHhhcCCEEEEecCCCCHHHHH
Confidence            99998888888776554 44455545578765544

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=98.25  E-value=1.4e-05  Score=74.69  Aligned_cols=116  Identities=19%  Similarity=0.190  Sum_probs=77.7

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |++||+|+|+ |.||+.+++.+.+ .++++. ++|++.  .....+.    ..++...+++++++      .++|+||.+
T Consensus         1 ~~~~IgviG~-G~mG~~~a~~l~~-~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~~~~e~~------~~~d~vi~~   65 (296)
T PRK11559          1 MTMKVGFIGL-GIMGKPMSKNLLK-AGYSLV-VYDRNP--EAVAEVI----AAGAETASTAKAVA------EQCDVIITM   65 (296)
T ss_pred             CCceEEEEcc-CHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHH------hcCCEEEEe
Confidence            5689999997 9999999998874 678876 477642  2222222    34566778888887      379999987


Q ss_pred             CCchhHHHHHH-------HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057          114 TDASTVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       114 T~p~a~~~~~~-------~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      .++....+.+.       ..++.|. +|+-++..++...+++.+.+++.++.++-+|=+
T Consensus        66 vp~~~~~~~v~~~~~~~~~~~~~g~-iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~  123 (296)
T PRK11559         66 LPNSPHVKEVALGENGIIEGAKPGT-VVIDMSSIAPLASREIAAALKAKGIEMLDAPVS  123 (296)
T ss_pred             CCCHHHHHHHHcCcchHhhcCCCCc-EEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCC
Confidence            76544433331       2223344 444455556667778888887778887777744

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=98.24  E-value=4.5e-06  Score=80.03  Aligned_cols=133  Identities=18%  Similarity=0.113  Sum_probs=84.2

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcC------------CCCCCeeecCCHHHHHhccccC
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDM------------EQPLEIPVMSDLTMVLGSISQS  104 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~~~g~------------~~~~gv~v~~dl~~~l~~~~~~  104 (303)
                      |||+|+ |++|+.+++.+.++++++||++.|.+.. ...+....|.            ..+.++.+..++++++      
T Consensus         1 VaInG~-GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl------   73 (333)
T TIGR01546         1 VGVNGY-GTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLL------   73 (333)
T ss_pred             CEEECC-cHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHh------
Confidence            689998 9999999999988899999999985320 0011111110            0123466778899998      


Q ss_pred             CCccEEEEcCCchhHHHHHHHHHHcCCC-eEEeCCCCCHHHH-----HHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHH
Q 022057          105 KARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPHIQLETV-----SALSAFCDKASMGCLIAPTLSIGSILLQQAAIS  178 (303)
Q Consensus       105 ~~~DVvIDfT~p~a~~~~~~~al~~g~~-vVigTTG~~~e~~-----~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~  178 (303)
                      .++|+|+++|....+..+....++.|.. +++|-+.-+..+.     ---.++.   +-.  +-+|-|=--|=|..+++.
T Consensus        74 ~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~---~~~--~vs~aSCtTn~Lap~~~~  148 (333)
T TIGR01546        74 EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAAL---GKD--YVRVVSCNTTGLVRTLNA  148 (333)
T ss_pred             hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcC---cCc--eEEecCchHhhHHHHHHH
Confidence            3799999999888889999999999865 4555442110000     0001111   112  335556666767777776


Q ss_pred             hccC
Q 022057          179 ASFH  182 (303)
Q Consensus       179 ~~~~  182 (303)
                      +.+.
T Consensus       149 L~~~  152 (333)
T TIGR01546       149 INDY  152 (333)
T ss_pred             HHHh
Confidence            6543

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=98.24  E-value=1.4e-05  Score=85.20  Aligned_cols=143  Identities=16%  Similarity=0.157  Sum_probs=95.7

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcC--------CcEEEEEEecCC-----CCcchhhhhcCCCC-CCeeecCCHHHHHh
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHS-----VGEDIGMVCDMEQP-LEIPVMSDLTMVLG   99 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~--------~~eLvg~vd~~~-----~g~d~~~~~g~~~~-~gv~v~~dl~~~l~   99 (303)
                      ++++|+|+|+ |.+|+.+++.+.++.        +++++++.++..     .|-+...+...... ...+-.+++-+.+.
T Consensus       464 ~~~~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (819)
T PRK09436        464 QVLDVFVIGV-GGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRLVK  542 (819)
T ss_pred             ccccEEEEec-CHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHHHHHHh
Confidence            5799999998 999999999986543        577889887531     12232222110000 00000112222332


Q ss_pred             ccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCH---HHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHH
Q 022057          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL---ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (303)
Q Consensus       100 ~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~---e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a  176 (303)
                      .  .....||+||+|.-+....+...++++|+|||...-+.-.   ++.++|.++|+++++.+.|-++..=|.-++.-+-
T Consensus       543 ~--~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~~giPii~~l~  620 (819)
T PRK09436        543 E--YHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVGAGLPVIETLQ  620 (819)
T ss_pred             h--cCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeeccccchHHHHH
Confidence            1  0114599999998777777788999999999977654322   6889999999999999999998888887766654


Q ss_pred             HHh
Q 022057          177 ISA  179 (303)
Q Consensus       177 ~~~  179 (303)
                      ..+
T Consensus       621 ~~~  623 (819)
T PRK09436        621 NLL  623 (819)
T ss_pred             HHH
Confidence            444

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=98.21  E-value=7.1e-06  Score=78.89  Aligned_cols=94  Identities=18%  Similarity=0.233  Sum_probs=67.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhc------CCC-CCCeeecCCHH-HHHhccccCCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCD------MEQ-PLEIPVMSDLT-MVLGSISQSKA  106 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~~~~~g------~~~-~~gv~v~~dl~-~~l~~~~~~~~  106 (303)
                      |||+|+|++|.||+.+++.+.++++++|++++++. ..|++..+...      ... -....+ .+++ +.+      .+
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~   73 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPI-VEPEPVAS------KD   73 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEE-EeCCHHHh------cc
Confidence            58999999999999999999989999999998753 34555543321      100 011111 1222 222      47


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCeEEe
Q 022057          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~~~al~~g~~vVig  136 (303)
                      +|+|+.++++..+.++...++++|+.+|.=
T Consensus        74 ~DvVf~a~p~~~s~~~~~~~~~~G~~VIDl  103 (341)
T TIGR00978        74 VDIVFSALPSEVAEEVEPKLAEAGKPVFSN  103 (341)
T ss_pred             CCEEEEeCCHHHHHHHHHHHHHCCCEEEEC
Confidence            999999998898999999999999998863

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=98.20  E-value=1e-05  Score=78.09  Aligned_cols=99  Identities=17%  Similarity=0.171  Sum_probs=69.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhc-CCCCCCeeec-CCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCD-MEQPLEIPVM-SDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~~~~~g-~~~~~gv~v~-~dl~~~l~~~~~~~~~DVvID  112 (303)
                      |||+|+|+||.+|+.+++.+.++|+++|+++++++ ..|+...+..+ +....+..+. .+.++++      .++|+++-
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~DvVf~   74 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIA------EDADVVFL   74 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhh------cCCCEEEE
Confidence            58999999999999999999999999999887653 24554433221 0000011121 1445554      36999997


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVPHI  140 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTTG~  140 (303)
                      +++.+.+.+.+..++++|++||-=++.|
T Consensus        75 alP~~~s~~~~~~~~~~G~~VIDlS~~f  102 (346)
T TIGR01850        75 ALPHGVSAELAPELLAAGVKVIDLSADF  102 (346)
T ss_pred             CCCchHHHHHHHHHHhCCCEEEeCChhh
Confidence            7777888999999999999888655543

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PLN02700 homoserine dehydrogenase family protein

Probab=98.20  E-value=1.8e-05  Score=77.04  Aligned_cols=139  Identities=17%  Similarity=0.240  Sum_probs=89.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC--------CcEEEEEEecCC---------CCcchhhhhc---C-CCCCCeeec--
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHS---------VGEDIGMVCD---M-EQPLEIPVM--   91 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~--------~~eLvg~vd~~~---------~g~d~~~~~g---~-~~~~gv~v~--   91 (303)
                      +++|+|+|+ |.+|+.+++.+.++.        ++.++++.|+..         .|-|...+..   . ........+  
T Consensus         3 ~i~i~liG~-G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~   81 (377)
T PLN02700          3 KIPVLLLGC-GGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGA   81 (377)
T ss_pred             EEEEEEEec-ChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhh
Confidence            489999997 999999999876543        367888888531         1333322221   0 001111001  


Q ss_pred             -----------------CCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhh
Q 022057           92 -----------------SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (303)
Q Consensus        92 -----------------~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~  154 (303)
                                       .+..+.+..    ...+|+||+|......++.+.++++|+|||...-+......+++.++++ 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~-  156 (377)
T PLN02700         82 LAGGCQVFNNSELSRKVIDIATLLGK----STGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAA-  156 (377)
T ss_pred             ccccccccccccccchhhhHHHHhhc----cCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHH-
Confidence                             122232311    3469999999888888999999999999997655433334455666665 


Q ss_pred             cCCeEEEcCCCcHHHHHHHHHHHHh
Q 022057          155 ASMGCLIAPTLSIGSILLQQAAISA  179 (303)
Q Consensus       155 ~~i~vv~a~N~SiGv~ll~~~a~~~  179 (303)
                      +++.+.|-+|..-|.-++.-+-..+
T Consensus       157 ~~~~~~yEatVgaGlPiI~tl~~ll  181 (377)
T PLN02700        157 HPRRIRHESTVGAGLPVIASLNRIL  181 (377)
T ss_pred             cCCeEEEEeeeeeccchHHHHHHHh
Confidence            5899999998888877665554443

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=98.16  E-value=2.3e-05  Score=83.24  Aligned_cols=134  Identities=16%  Similarity=0.148  Sum_probs=91.9

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcC---------CcEEEEEEecCC-----CCcchhhhhcCCCCCCeeecCCHH---H
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHS-----VGEDIGMVCDMEQPLEIPVMSDLT---M   96 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~---------~~eLvg~vd~~~-----~g~d~~~~~g~~~~~gv~v~~dl~---~   96 (303)
                      ++++|+|+|+ |.+|+.+++.+.++.         +++++++.+++.     .|-+...+.......  ....+++   +
T Consensus       457 ~~i~i~l~G~-G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~--~~~~~~~~~~e  533 (810)
T PRK09466        457 KRIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDE--AVEWDEESLFL  533 (810)
T ss_pred             ceEEEEEEec-CCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhh--cCCccHHHHHH
Confidence            4699999998 999999999886542         578899998632     122333222100000  0111233   3


Q ss_pred             HHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCC---CHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHH
Q 022057           97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI---QLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (303)
Q Consensus        97 ~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~---~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll  172 (303)
                      .+..  ...+.+|+||+|..+....+...++++|+|||...-..   ..+..++|.++++++|+.+.|-++..=|+-++
T Consensus       534 ~i~~--~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPii  610 (810)
T PRK09466        534 WLRA--HPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPIN  610 (810)
T ss_pred             HHhh--cCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccChH
Confidence            3321  01123699999988777778889999999999776532   34688999999999999999999988888764

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=98.11  E-value=8.6e-06  Score=78.22  Aligned_cols=152  Identities=18%  Similarity=0.085  Sum_probs=90.3

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhh--hcCC---CCCCeeec--C
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMV--CDME---QPLEIPVM--S   92 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~~~~--~g~~---~~~gv~v~--~   92 (303)
                      |++||+|+|+ |||||.+.+.+.++++++|+++.|+..              .|+--+++  .|..   ....+.++  .
T Consensus         1 m~ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~   79 (334)
T PRK08955          1 MTIKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNK   79 (334)
T ss_pred             CCeEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecC
Confidence            4689999999 999999999999889999999998310              01100001  0000   00123332  2


Q ss_pred             CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC------------CCCHHHHHHHHHHhhhcCCeEE
Q 022057           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP------------HIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT------------G~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      +++++-    + .++|+|+++|-.....+.+...++.|...|+=+.            |.+++   .+..  +.  -.++
T Consensus        80 ~~~~~~----w-~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~---~~~~--~~--~~II  147 (334)
T PRK08955         80 AIADTD----W-SGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDH---LFDP--AI--HPIV  147 (334)
T ss_pred             ChhhCC----c-cCCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHH---Hhcc--cC--CCEE
Confidence            455442    2 3899999999999899999999999976665432            22222   2221  11  2444


Q ss_pred             EcCCCcHHHHHHHHHHHHhccCC--CcEEEEEccC--C---CCCCCc
Q 022057          161 IAPTLSIGSILLQQAAISASFHY--KNVEIVESRP--N---ARDFPS  200 (303)
Q Consensus       161 ~a~N~SiGv~ll~~~a~~~~~~~--~dieIiE~Hh--~---K~DaPS  200 (303)
                        +|=|=-.|-|.-+++.+.+.+  ...-+.-.|.  +   -.|.|+
T Consensus       148 --SnasCtTn~Lap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~  192 (334)
T PRK08955        148 --TAASCTTNCLAPVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPH  192 (334)
T ss_pred             --ECCccHHHHHHHHHHHHHHhcCeeEEEEEEEEeccCccccccCCC
Confidence              555555665666666654332  2333444574  2   357775

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=98.09  E-value=9.8e-06  Score=69.42  Aligned_cols=34  Identities=38%  Similarity=0.419  Sum_probs=31.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      |||+|+|+ ||+||.+++.+..++++||+++-|..
T Consensus         1 ikVgINGf-GRIGR~v~r~~~~~~~~evvaInd~~   34 (151)
T PF00044_consen    1 IKVGINGF-GRIGRLVLRAALDQPDIEVVAINDPA   34 (151)
T ss_dssp             EEEEEEST-SHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred             CEEEEECC-CcccHHHHHhhcccceEEEEEEeccc
Confidence            69999998 99999999999999999999998853

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.04  E-value=3.9e-05  Score=70.54  Aligned_cols=117  Identities=9%  Similarity=0.055  Sum_probs=72.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCC-CeeecCCHHHHHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |||+++|+ |+||+.+++.+.+.. ..+.+.+.+++.  ..+.++.   ..+ ++.++++.+++++      ++|+|+-.
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~--~~~~~l~---~~~~~~~~~~~~~~~~~------~aDvVila   68 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNA--QIAARLA---ERFPKVRIAKDNQAVVD------RSDVVFLA   68 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCH--HHHHHHH---HHcCCceEeCCHHHHHH------hCCEEEEE
Confidence            48999998 999999999987542 222345555532  2223333   123 4667788888874      68999999


Q ss_pred             CCchhHHHHHHHH-HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057          114 TDASTVYDNVKQA-TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI  167 (303)
Q Consensus       114 T~p~a~~~~~~~a-l~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~Si  167 (303)
                      +.|+...+.+... +..+..+|.-..|.+.++++.+   .......+...||...
T Consensus        69 v~p~~~~~vl~~l~~~~~~~vis~~ag~~~~~l~~~---~~~~~~~~r~~P~~~~  120 (258)
T PRK06476         69 VRPQIAEEVLRALRFRPGQTVISVIAATDRAALLEW---IGHDVKLVRAIPLPFV  120 (258)
T ss_pred             eCHHHHHHHHHHhccCCCCEEEEECCCCCHHHHHHH---hCCCCCEEEECCCChh
Confidence            9988887777543 2345555554447777665544   3332234445565433

>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=98.03  E-value=2.3e-05  Score=71.37  Aligned_cols=116  Identities=16%  Similarity=0.223  Sum_probs=96.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .||.+-|++||-|..+.+... +-+..+||.+++.+.|.         .-+|.|+|.+..|+.++    .++|.-+.|-+
T Consensus        39 TkVi~QGfTGKqgTFHs~q~~-eYgTk~VgG~~pkK~Gt---------~HLG~PVF~sV~eA~~~----t~a~AsvIyVP  104 (329)
T KOG1255|consen   39 TKVICQGFTGKQGTFHSQQAL-EYGTKVVGGVNPKKGGT---------THLGLPVFNSVAEAKKE----TGADASVIYVP  104 (329)
T ss_pred             ceEEEecccCCccceeHHHHH-HhCCceeeccCCCcCcc---------cccCchhhhhHHHHHHh----hCCCceEEEeC
Confidence            589999999999999999777 46889999998865443         35788999999999875    78999888999


Q ss_pred             chhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057          116 ASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      |......+..++++-+|+++.-| |..+.+.-++...-....-.-++.||-
T Consensus       105 pp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNC  155 (329)
T KOG1255|consen  105 PPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNC  155 (329)
T ss_pred             ChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCCC
Confidence            99999999999999999998877 888877777776655545566888884

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=98.01  E-value=3.7e-05  Score=65.68  Aligned_cols=33  Identities=39%  Similarity=0.434  Sum_probs=30.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      |||+|+|+ |+||+.+++.+.+.++++|+++.|.
T Consensus         1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~   33 (149)
T smart00846        1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDL   33 (149)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecC
Confidence            58999998 9999999999998899999999984

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=98.01  E-value=7.2e-05  Score=74.56  Aligned_cols=114  Identities=18%  Similarity=0.261  Sum_probs=86.7

Q ss_pred             ceeEEEEcCC---cHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE
Q 022057           35 NIKVIINGAV---KEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (303)
Q Consensus        35 ~ikV~V~G~~---GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (303)
                      +-+|+|+|++   |++|+.+.+.+.+ .++  ++. .+++..     .+      -.|+++|.+++++-      ..+|+
T Consensus         7 p~siavvGaS~~~~~~g~~~~~~l~~-~gf~g~v~-~Vnp~~-----~~------i~G~~~~~sl~~lp------~~~Dl   67 (447)
T TIGR02717         7 PKSVAVIGASRDPGKVGYAIMKNLIE-GGYKGKIY-PVNPKA-----GE------ILGVKAYPSVLEIP------DPVDL   67 (447)
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHh-CCCCCcEE-EECCCC-----Cc------cCCccccCCHHHCC------CCCCE
Confidence            3579999997   7899999999885 344  453 354431     11      35789999999984      47999


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCeE-EeCCCCCH------HHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          110 VIDFTDASTVYDNVKQATAFGMRSV-VYVPHIQL------ETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~g~~vV-igTTG~~~------e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      +|-+++|+.+.+.++.|.+.|+..+ +-|.||.+      +..++|.++|+++|+. ++.|| ++|+
T Consensus        68 avi~vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir-vlGPn-c~G~  132 (447)
T TIGR02717        68 AVIVVPAKYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR-LLGPN-CLGI  132 (447)
T ss_pred             EEEecCHHHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE-EEecC-eeeE
Confidence            9999999999999999999998655 55668764      2247899999999988 56677 4555

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.00  E-value=3.7e-05  Score=59.64  Aligned_cols=87  Identities=16%  Similarity=0.110  Sum_probs=61.0

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeecC-CHHHHHhccccCCCccEEEEc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      ||+++|+ |+||+.+++.+.+..  ..++.-+.+++.  +.+.++.   ..+++.++. +..++++      .+|++|-+
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~--~~~~~~~---~~~~~~~~~~~~~~~~~------~advvila   68 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSP--EKAAELA---KEYGVQATADDNEEAAQ------EADVVILA   68 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSH--HHHHHHH---HHCTTEEESEEHHHHHH------HTSEEEE-
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcH--HHHHHHH---HhhccccccCChHHhhc------cCCEEEEE
Confidence            7999997 999999999987542  267775556542  3334443   356666655 7888884      79999999


Q ss_pred             CCchhHHHHHHHH--HHcCCCeEE
Q 022057          114 TDASTVYDNVKQA--TAFGMRSVV  135 (303)
Q Consensus       114 T~p~a~~~~~~~a--l~~g~~vVi  135 (303)
                      ..|....+.+...  ...++-+|.
T Consensus        69 v~p~~~~~v~~~i~~~~~~~~vis   92 (96)
T PF03807_consen   69 VKPQQLPEVLSEIPHLLKGKLVIS   92 (96)
T ss_dssp             S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred             ECHHHHHHHHHHHhhccCCCEEEE
Confidence            9999988888765  556666654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.00  E-value=3.4e-05  Score=69.25  Aligned_cols=92  Identities=24%  Similarity=0.383  Sum_probs=66.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--cCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ..||+|+|+ |.+|+.+++.+. ...+++++|++|.+.  ...+...     .++++  ++++++++.+    .++|++|
T Consensus        84 ~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~--~~~~~~i-----~g~~v~~~~~l~~li~~----~~iD~Vi  151 (213)
T PRK05472         84 TWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDP--EKIGTKI-----GGIPVYHIDELEEVVKE----NDIEIGI  151 (213)
T ss_pred             CcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECCh--hhcCCEe-----CCeEEcCHHHHHHHHHH----CCCCEEE
Confidence            579999998 999999998643 457899999999642  1111111     12333  4577888763    5799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEE-eCC
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVV-YVP  138 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVi-gTT  138 (303)
                      .++++..+.+....++++|+..|. .++
T Consensus       152 Ia~P~~~~~~i~~~l~~~Gi~~il~~~p  179 (213)
T PRK05472        152 LTVPAEAAQEVADRLVEAGIKGILNFAP  179 (213)
T ss_pred             EeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence            888888889999999999965554 454

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.97  E-value=7.3e-05  Score=71.72  Aligned_cols=88  Identities=18%  Similarity=0.200  Sum_probs=63.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHH-HHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVvI  111 (303)
                      |+||+|+|++|..|+.+++.+.+  .|.++|+++......|+... +.+    ..+.+. +++ ..+      .++|+||
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~-~~g----~~i~v~-d~~~~~~------~~vDvVf   68 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS-FKG----KELKVE-DLTTFDF------SGVDIAL   68 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee-eCC----ceeEEe-eCCHHHH------cCCCEEE
Confidence            57999999999999999999987  68889999776544444432 111    123332 222 223      3799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeE
Q 022057          112 DFTDASTVYDNVKQATAFGMRSV  134 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vV  134 (303)
                      .++......+.+..++++|+.||
T Consensus        69 ~A~g~g~s~~~~~~~~~~G~~VI   91 (334)
T PRK14874         69 FSAGGSVSKKYAPKAAAAGAVVI   91 (334)
T ss_pred             ECCChHHHHHHHHHHHhCCCEEE
Confidence            77777778999999999998544

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.97  E-value=0.00012  Score=69.04  Aligned_cols=113  Identities=14%  Similarity=0.131  Sum_probs=73.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |||+++|+ |+||+.+++.+.+ .+++|+ ++|++.  .....+.    ..|+..+.+++++.+..   ..+|+||-+.+
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~-~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~s~~~~~~~~---~~advVi~~vp   68 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLRE-DGHEVV-GYDVNQ--EAVDVAG----KLGITARHSLEELVSKL---EAPRTIWVMVP   68 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHHhC---CCCCEEEEEec
Confidence            48999997 9999999999875 678877 578652  2222222    35677788999887520   23799988877


Q ss_pred             ch-hHHHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057          116 AS-TVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus       116 p~-a~~~~~~~al~~--g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      ++ .+.+.+......  .-.+|+-++..+++...++.+..++.++..+
T Consensus        69 ~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~v  116 (299)
T PRK12490         69 AGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYV  116 (299)
T ss_pred             CchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEE
Confidence            66 445554443322  1246666655555556666666666676644

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.96  E-value=5.2e-05  Score=61.73  Aligned_cols=97  Identities=19%  Similarity=0.174  Sum_probs=62.4

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhcCCCCCCeeecCCHH-HHHhccccCCCccEEEEcC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVvIDfT  114 (303)
                      ||+|+|++|.+|+.+++.+.+.++++++++++++ ..|+++....+   +..-.++.+++ +.++.    .++|+|+.++
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~DvV~~~~   73 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGP---HLKGEVVLELEPEDFEE----LAVDIVFLAL   73 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCc---ccccccccccccCChhh----cCCCEEEEcC
Confidence            6899998899999999999988999999997753 23444433211   11101111221 11111    4789999888


Q ss_pred             CchhHHHHH---HHHHHcCCCeEEeCCCC
Q 022057          115 DASTVYDNV---KQATAFGMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~---~~al~~g~~vVigTTG~  140 (303)
                      +++.+.+.+   ..+++.|+.+|--++-+
T Consensus        74 ~~~~~~~~~~~~~~~~~~g~~viD~s~~~  102 (122)
T smart00859       74 PHGVSKEIAPLLPKAAEAGVKVIDLSSAF  102 (122)
T ss_pred             CcHHHHHHHHHHHhhhcCCCEEEECCccc
Confidence            888888854   44557888777444433

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.94  E-value=3.9e-05  Score=72.96  Aligned_cols=122  Identities=15%  Similarity=0.187  Sum_probs=77.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh----------cCCCCCCeeecCCHHHHHhccccC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----------DMEQPLEIPVMSDLTMVLGSISQS  104 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~----------g~~~~~gv~v~~dl~~~l~~~~~~  104 (303)
                      +|||+|+|+ |.||..++..+.. .++++. +++++.  .....+.          |......+..++++++++      
T Consensus         4 ~m~I~iIG~-G~mG~~ia~~L~~-~G~~V~-~~~r~~--~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~------   72 (328)
T PRK14618          4 GMRVAVLGA-GAWGTALAVLAAS-KGVPVR-LWARRP--EFAAALAAERENREYLPGVALPAELYPTADPEEAL------   72 (328)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH------
Confidence            469999998 9999999998874 467765 466531  1111111          100001144567888876      


Q ss_pred             CCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHH--HHHHHHHhhh---cCCeEEEcCCCcHH
Q 022057          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET--VSALSAFCDK---ASMGCLIAPTLSIG  168 (303)
Q Consensus       105 ~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~--~~~L~~~a~~---~~i~vv~a~N~SiG  168 (303)
                      .++|+||-+..+..+.+.+. .++.+..+|.-++|++.++  ...+.+...+   .++.++-.||++--
T Consensus        73 ~~aD~Vi~~v~~~~~~~v~~-~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~  140 (328)
T PRK14618         73 AGADFAVVAVPSKALRETLA-GLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEE  140 (328)
T ss_pred             cCCCEEEEECchHHHHHHHH-hcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHH
Confidence            47899997777776655553 3456677777788876443  4455555544   56777888887665

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.92  E-value=0.00019  Score=67.55  Aligned_cols=118  Identities=12%  Similarity=0.075  Sum_probs=75.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |||+++|+ |.||+.+++.+.+ .+++|+ ++|++.  .....+.    +.|+.+.++++++.+..   ..+|+||-+.+
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~-~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~~~~e~~~~~---~~~dvvi~~v~   68 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLR-GGHEVV-GYDRNP--EAVEALA----EEGATGADSLEELVAKL---PAPRVVWLMVP   68 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHH-CCCeEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHhhc---CCCCEEEEEec
Confidence            48999997 9999999999885 578875 477652  2222232    35677788899887520   14798887665


Q ss_pred             ch-hHHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057          116 AS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus       116 p~-a~~~~~~~a---l~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                      +. .+.+.+...   ++.|.-+|..+|+. ++...++.+.+++.|+..+=+|...
T Consensus        69 ~~~~~~~v~~~l~~~l~~g~ivid~st~~-~~~~~~~~~~~~~~g~~~~dapvsG  122 (301)
T PRK09599         69 AGEITDATIDELAPLLSPGDIVIDGGNSY-YKDDIRRAELLAEKGIHFVDVGTSG  122 (301)
T ss_pred             CCcHHHHHHHHHHhhCCCCCEEEeCCCCC-hhHHHHHHHHHHHcCCEEEeCCCCc
Confidence            54 444444333   33443344444444 4455667777778888877666654

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=97.87  E-value=5.1e-05  Score=73.01  Aligned_cols=197  Identities=17%  Similarity=0.102  Sum_probs=105.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchh-hh---hcC--C-CCCCeeec--
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIG-MV---CDM--E-QPLEIPVM--   91 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~~-~~---~g~--~-~~~gv~v~--   91 (303)
                      ++||||+|+ ||||+.+++.+.+.++++|+++.|+..              .|+--+ ++   .|.  . ....+.++  
T Consensus         5 ~lrVaI~G~-GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~   83 (338)
T PLN02358          5 KIRIGINGF-GRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGI   83 (338)
T ss_pred             ceEEEEEee-cHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEc
Confidence            689999998 999999999998889999999998421              011000 00   000  0 00012222  


Q ss_pred             CCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC----------CCCCHHHHHHHHHHhhhcCCeEEE
Q 022057           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV----------PHIQLETVSALSAFCDKASMGCLI  161 (303)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT----------TG~~~e~~~~L~~~a~~~~i~vv~  161 (303)
                      .|++++-=   .+.++|+|+++|-.....+.+...+++|...|+=+          +|.+.++++      .+  -.++ 
T Consensus        84 ~~p~~~~w---~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~------~~--~~II-  151 (338)
T PLN02358         84 RNPEDIPW---GEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYK------SD--LDIV-  151 (338)
T ss_pred             CCcccCcc---cccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhC------CC--CCEE-
Confidence            23333210   01479999999999999999999999997555433          244444322      12  2444 


Q ss_pred             cCCCcHHHHHHHHHHHHhccCC--CcEEEEEccC----C-CCCCCcHHHHHHHHHHHhc--CcccccCcccccccccCcc
Q 022057          162 APTLSIGSILLQQAAISASFHY--KNVEIVESRP----N-ARDFPSPDATQIANNLSNL--GQIYNREDISTDVKARGQV  232 (303)
Q Consensus       162 a~N~SiGv~ll~~~a~~~~~~~--~dieIiE~Hh----~-K~DaPSGTA~~l~~~i~~~--~~~~~r~~~~~~~~~rg~~  232 (303)
                       +|=|=-.|-|.-+++.+.+.+  ...-+.-.|.    + -.|.|+..-.+-+..++..  +..   .+...   .-+.+
T Consensus       152 -SnasCTTn~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~---tGaak---a~~kI  224 (338)
T PLN02358        152 -SNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS---TGAAK---AVGKV  224 (338)
T ss_pred             -ECCCchHHHHHHHHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCC---cchhh---hhhhc
Confidence             455555555555555554322  2233444463    2 3577764333222222220  110   00000   00111


Q ss_pred             cc--CCceeEEEEEcCCCcee
Q 022057          233 LG--EDGVRVHSMVLPGLPSS  251 (303)
Q Consensus       233 ~~--~~~i~ihS~R~g~ivg~  251 (303)
                      +.  +..+..+++|.|-..|+
T Consensus       225 lP~l~gkl~g~avRVPv~~gs  245 (338)
T PLN02358        225 LPSLNGKLTGMSFRVPTVDVS  245 (338)
T ss_pred             cccCCCcEEEEEEEeeEcCee
Confidence            11  14588999999987763

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.85  E-value=5.3e-05  Score=72.80  Aligned_cols=100  Identities=21%  Similarity=0.198  Sum_probs=66.0

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-C-------------CCcchhhhh--c--C-CCCCCeeec--C
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-S-------------VGEDIGMVC--D--M-EQPLEIPVM--S   92 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-~-------------~g~d~~~~~--g--~-~~~~gv~v~--~   92 (303)
                      |++||+|+|+ ||+||.+.+.+.+.+++|+|++-|+. .             .|+--+++.  +  + .....++++  .
T Consensus         1 m~~ki~INGf-GRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~   79 (337)
T PTZ00023          1 MVVKLGINGF-GRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEK   79 (337)
T ss_pred             CceEEEEECc-ChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCC
Confidence            6689999998 99999999998878899999986621 0             011000000  0  0 001123333  3


Q ss_pred             CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (303)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT  137 (303)
                      |++++-=   .+.++|+|+++|......+.+..++++|...|+=+
T Consensus        80 dp~~lpW---~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iS  121 (337)
T PTZ00023         80 DPAAIPW---GKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMS  121 (337)
T ss_pred             ChhhCCc---cccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeC
Confidence            4554421   12479999999988888999999999997777654

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.85  E-value=0.00023  Score=66.24  Aligned_cols=115  Identities=11%  Similarity=0.169  Sum_probs=74.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      |||+++|+ |+||+.+++.+.+..   ..+++ +++++. ...+..+.   ..+++.++.+..+++      .++|+||-
T Consensus         4 mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~-v~~r~~-~~~~~~l~---~~~g~~~~~~~~e~~------~~aDvVil   71 (279)
T PRK07679          4 QNISFLGA-GSIAEAIIGGLLHANVVKGEQIT-VSNRSN-ETRLQELH---QKYGVKGTHNKKELL------TDANILFL   71 (279)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEE-EECCCC-HHHHHHHH---HhcCceEeCCHHHHH------hcCCEEEE
Confidence            59999998 999999999988653   24444 466532 11122232   245677778888876      47899998


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEe-CCCCCHHHHHHHHHHhhhcCCeEEEc-CCCc
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVY-VPHIQLETVSALSAFCDKASMGCLIA-PTLS  166 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVig-TTG~~~e~~~~L~~~a~~~~i~vv~a-~N~S  166 (303)
                      +..|....+.+......  .-.+|+- ..|.+.+++.++   .. .+.|++.+ ||+.
T Consensus        72 av~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~---~~-~~~~v~r~mPn~~  125 (279)
T PRK07679         72 AMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNL---LQ-KDVPIIRAMPNTS  125 (279)
T ss_pred             EeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHH---cC-CCCeEEEECCCHH
Confidence            88898887777655432  2235555 478887765543   32 23566655 6655

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=97.84  E-value=9.9e-05  Score=70.36  Aligned_cols=79  Identities=16%  Similarity=0.146  Sum_probs=61.1

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      ||+||+|+|++|-.|+.+++.+.++|.++|+....+..  .+.               .+.++.+      .++|+++-+
T Consensus         1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~--~~~---------------~~~~~~~------~~~DvvFla   57 (313)
T PRK11863          1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR--KDA---------------AARRELL------NAADVAILC   57 (313)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCC--Ccc---------------cCchhhh------cCCCEEEEC
Confidence            78999999999999999999999999999998875431  111               1123333      368999866


Q ss_pred             CCchhHHHHHHHHHHcCCCeEE
Q 022057          114 TDASTVYDNVKQATAFGMRSVV  135 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVi  135 (303)
                      .+.+...+.+..+.+.|+.||-
T Consensus        58 lp~~~s~~~~~~~~~~g~~VID   79 (313)
T PRK11863         58 LPDDAAREAVALIDNPATRVID   79 (313)
T ss_pred             CCHHHHHHHHHHHHhCCCEEEE
Confidence            6667779999999899997663

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.83  E-value=0.00013  Score=70.19  Aligned_cols=120  Identities=16%  Similarity=0.151  Sum_probs=79.4

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecC-CHHHHHhccccCCCccEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVV  110 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVv  110 (303)
                      +|+||+|+|+||..|+.+++.+.  ..|..+|+.+.+....|+.+. +.+    ....+.. +.++ +      .++|++
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~-~~~----~~l~~~~~~~~~-~------~~vD~v   70 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVP-FAG----KNLRVREVDSFD-F------SQVQLA   70 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeec-cCC----cceEEeeCChHH-h------cCCCEE
Confidence            45899999999999999999998  579999998877655554433 111    1122211 2222 3      379999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCeEEeC------------CCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHH
Q 022057          111 IDFTDASTVYDNVKQATAFGMRSVVYV------------PHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~vVigT------------TG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~l  171 (303)
                      +-+++++...+.+..+.++|+.+|-=+            |.++.++   |..+- +  ..++-.||=+.-..+
T Consensus        71 Fla~p~~~s~~~v~~~~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~---i~~~~-~--~~iIAnPgC~~t~~~  137 (336)
T PRK05671         71 FFAAGAAVSRSFAEKARAAGCSVIDLSGALPSAQAPNVVPEVNAER---LASLA-A--PFLVSSPSASAVALA  137 (336)
T ss_pred             EEcCCHHHHHHHHHHHHHCCCeEEECchhhcCCCCCEEecccCHHH---Hcccc-C--CCEEECCCcHHHHHH
Confidence            867777778889999999999877332            3334433   32221 2  367888887666544

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.83  E-value=9.6e-05  Score=69.54  Aligned_cols=121  Identities=19%  Similarity=0.235  Sum_probs=70.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC----------CCCCCeeecCCHHHHHhccccC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM----------EQPLEIPVMSDLTMVLGSISQS  104 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~----------~~~~gv~v~~dl~~~l~~~~~~  104 (303)
                      ||||+|+|+ |.||..++..+.+ .+.++ .+++++.  .....+...          ....++...+++++++      
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~-~g~~V-~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   69 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLAR-NGHDV-TLWARDP--EQAAEINADRENPRYLPGIKLPDNLRATTDLAEAL------   69 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCEE-EEEECCH--HHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHH------
Confidence            579999998 9999999998875 56775 4566531  111111100          0011455667888776      


Q ss_pred             CCccEEEEcCCchhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhh-----cCCeEEEcCCCc
Q 022057          105 KARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDK-----ASMGCLIAPTLS  166 (303)
Q Consensus       105 ~~~DVvIDfT~p~a~~~~~~~al~---~g~~vVigTTG~~~e~~~~L~~~a~~-----~~i~vv~a~N~S  166 (303)
                      .++|++|-++.+....+.+.....   .+..+|.-+.|++.+....+.+..++     ....++..||+.
T Consensus        70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~  139 (325)
T PRK00094         70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFA  139 (325)
T ss_pred             hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHH
Confidence            478999988877666665554443   34444444336654333223332222     135567778864

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.82  E-value=0.00027  Score=66.61  Aligned_cols=115  Identities=13%  Similarity=0.078  Sum_probs=69.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |||+++|+ |+||..+++.+.+ .+++++. +|++.  .....+.    +.++....+++++.+.+   ..+|+|+-+.+
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~-~g~~V~~-~dr~~--~~~~~l~----~~g~~~~~s~~~~~~~~---~~~dvIi~~vp   68 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAK-RGHDCVG-YDHDQ--DAVKAMK----EDRTTGVANLRELSQRL---SAPRVVWVMVP   68 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH----HcCCcccCCHHHHHhhc---CCCCEEEEEcC
Confidence            48999998 9999999998874 6788865 77652  2222332    23444456777765321   36899998777


Q ss_pred             chhHHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057          116 ASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus       116 p~a~~~~~~~a---l~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                      +..+.+.+...   ++.|.-+|-.+|+... +..++.+.+++.|+..+=+|
T Consensus        69 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~-~t~~~~~~~~~~g~~~vda~  118 (298)
T TIGR00872        69 HGIVDAVLEELAPTLEKGDIVIDGGNSYYK-DSLRRYKLLKEKGIHLLDCG  118 (298)
T ss_pred             chHHHHHHHHHHhhCCCCCEEEECCCCCcc-cHHHHHHHHHhcCCeEEecC
Confidence            76555555443   3455445555555433 33444444555666655433

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.79  E-value=0.00016  Score=66.42  Aligned_cols=113  Identities=18%  Similarity=0.203  Sum_probs=72.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCc----EEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGM----EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~----eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |||+++|+ |.||..+++.+.+. ++    +++...+++.  .....+.    +.|+.+.++.++++      .++|+||
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~-g~~~~~~i~v~~~r~~--~~~~~~~----~~g~~~~~~~~e~~------~~aDvVi   66 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVAS-GVVPPSRISTADDSNP--ARRDVFQ----SLGVKTAASNTEVV------KSSDVII   66 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHC-CCCCcceEEEEeCCCH--HHHHHHH----HcCCEEeCChHHHH------hcCCEEE
Confidence            68999997 99999999998854 33    6654336542  1222222    45777788888877      3789999


Q ss_pred             EcCCchhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE-EcCCCcH
Q 022057          112 DFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSI  167 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~---~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv-~a~N~Si  167 (303)
                      -+..|+.+.+.+.....   .+.-+|.-+.|.+.++++   ++...  .+++ ..||...
T Consensus        67 l~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~---~~~~~--~~vvr~mP~~~~  121 (266)
T PLN02688         67 LAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQ---EWAGG--RRVVRVMPNTPC  121 (266)
T ss_pred             EEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHH---HHcCC--CCEEEECCCcHH
Confidence            98888888877765433   343344333577765544   33322  1555 5677644

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.76  E-value=0.00018  Score=67.17  Aligned_cols=119  Identities=9%  Similarity=0.064  Sum_probs=75.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCCCCC-CeeecCCHHHHHhccccCCCccEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~---~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVv  110 (303)
                      |+||+|+|+ |.||+.+++.+.+...   .+++. ++++. ......+.   ..+ ++.++.|.++++      .++|+|
T Consensus         1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~-~~r~~-~~~~~~l~---~~~~~~~~~~~~~e~~------~~aDvV   68 (277)
T PRK06928          1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIIL-YSSSK-NEHFNQLY---DKYPTVELADNEAEIF------TKCDHS   68 (277)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEE-EeCCc-HHHHHHHH---HHcCCeEEeCCHHHHH------hhCCEE
Confidence            579999998 9999999999876531   45654 44321 01112221   122 345567777776      478999


Q ss_pred             EEcCCchhHHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE-EcCCCcHHHH
Q 022057          111 IDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGSI  170 (303)
Q Consensus       111 IDfT~p~a~~~~~~~a---l~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv-~a~N~SiGv~  170 (303)
                      |-+..|..+.+.+..+   +..++.+|+-.-|.+.++++++   ...  .+++ .=||...-+.
T Consensus        69 ilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~---~~~--~~vvR~MPN~~~~~g  127 (277)
T PRK06928         69 FICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEI---TPG--LQVSRLIPSLTSAVG  127 (277)
T ss_pred             EEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHH---cCC--CCEEEEeCccHHHHh
Confidence            9898999888877755   3456767766669988765553   322  2333 3377766553

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.76  E-value=0.00048  Score=67.09  Aligned_cols=121  Identities=11%  Similarity=0.111  Sum_probs=76.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCeeecC--CHHHHHhccccCCCccE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAV  109 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~~~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DV  109 (303)
                      |+||+|+|+||-.|+.+.+.+.++++++   |+. +.+...|.....+.|    ....+.+  |.++ +      .++|+
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~-~ss~~sg~~~~~f~g----~~~~v~~~~~~~~-~------~~~Di   68 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVF-FSTSQAGGAAPSFGG----KEGTLQDAFDIDA-L------KKLDI   68 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEE-ecchhhCCcccccCC----CcceEEecCChhH-h------cCCCE
Confidence            5899999999999999999888899998   777 443322333322222    1123332  2333 3      36898


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCC-eEEeCC--------------CCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHH
Q 022057          110 VIDFTDASTVYDNVKQATAFGMR-SVVYVP--------------HIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~g~~-vVigTT--------------G~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~l  171 (303)
                      ++=+...+...+....+.++|++ +||--+              .+++++   |.. ..+.|+.++..||=+.-..+
T Consensus        69 vf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~---i~~-~~~~g~~iIanPnC~tt~~~  141 (369)
T PRK06598         69 IITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDV---IDD-ALANGVKTFVGGNCTVSLML  141 (369)
T ss_pred             EEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHH---HHh-hhhcCCCEEEcCChHHHHHH
Confidence            88444556668888999999985 454443              234443   433 32355567888887665543

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=97.76  E-value=8.3e-05  Score=71.34  Aligned_cols=100  Identities=25%  Similarity=0.207  Sum_probs=65.3

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhhhcCC-----CCCCeeec--CC
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMVCDME-----QPLEIPVM--SD   93 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~~~~~g~~-----~~~gv~v~--~d   93 (303)
                      |++||+|+|+ ||+||.+.+.+.+++++|+|++=|...             .|+--+++.-..     ....+.++  .+
T Consensus         1 m~~~i~inGf-GRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~d   79 (331)
T PRK15425          1 MTIKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERD   79 (331)
T ss_pred             CceEEEEEee-ChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCC
Confidence            4589999998 999999999988788999999876210             011000000000     01123333  25


Q ss_pred             HHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (303)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT  137 (303)
                      ++++-=   .+.++|+|+++|-.....+.+...++.|...|+=+
T Consensus        80 p~~~~w---~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS  120 (331)
T PRK15425         80 PANLKW---DEVGVDVVAEATGLFLTDETARKHITAGAKKVVMT  120 (331)
T ss_pred             hhhCcc---cccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeC
Confidence            555321   01379999999988888999999999997766544

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.76  E-value=0.00013  Score=69.93  Aligned_cols=98  Identities=16%  Similarity=0.077  Sum_probs=69.0

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC-CCCeeec-CCHHHHHhccccCCCccEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ-PLEIPVM-SDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~-~~gv~v~-~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ||+||+|+|++|-.|-.+.+.+..+|++|+..+..+...|+...+..--.. -...+.. -|.+++..     .++|||+
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~-----~~~DvvF   75 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIEL-----DECDVVF   75 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhc-----ccCCEEE
Confidence            689999999999999999999999999996655544435665544321000 0111111 13344322     4689999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEe
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVY  136 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVig  136 (303)
                      -+++.....+.+...++.|+.||=-
T Consensus        76 lalPhg~s~~~v~~l~~~g~~VIDL  100 (349)
T COG0002          76 LALPHGVSAELVPELLEAGCKVIDL  100 (349)
T ss_pred             EecCchhHHHHHHHHHhCCCeEEEC
Confidence            8888889999999999999996643

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.75  E-value=0.00022  Score=60.94  Aligned_cols=124  Identities=15%  Similarity=0.167  Sum_probs=73.8

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-C-------CcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-V-------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~-------g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (303)
                      ||+|+|+ |.||.+++..+..+ +.++. .+.++. .       +.....+.+..-+..+.+++|+++++      .++|
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~-g~~V~-l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~------~~ad   71 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADN-GHEVT-LWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL------EDAD   71 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHC-TEEEE-EETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH------TT-S
T ss_pred             CEEEECc-CHHHHHHHHHHHHc-CCEEE-EEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh------Cccc
Confidence            7999998 99999999988754 45544 344321 0       00000111111123566789999998      4799


Q ss_pred             EEEEcCCchhHHHHHHHH---HHcCCCeEEeCCCCCHH----HHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          109 VVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLE----TVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       109 VvIDfT~p~a~~~~~~~a---l~~g~~vVigTTG~~~e----~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      ++|-.++...+.+.++..   ++.+.++|+-+-|+...    -.+.+.+......+.++-.|||+--+
T Consensus        72 ~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei  139 (157)
T PF01210_consen   72 IIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEI  139 (157)
T ss_dssp             EEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHH
T ss_pred             EEEecccHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHH
Confidence            999777777776666544   45778888776687321    12345565655558888999987654

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=97.74  E-value=9.1e-05  Score=73.25  Aligned_cols=162  Identities=15%  Similarity=0.084  Sum_probs=88.6

Q ss_pred             CCCCceeEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCcchhhhhc-CC-----CCCCee
Q 022057           31 PPQSNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGEDIGMVCD-ME-----QPLEIP   89 (303)
Q Consensus        31 ~~~~~ikV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~~~-------------~g~d~~~~~g-~~-----~~~gv~   89 (303)
                      .+.|++||+|+|+ ||+||.+.+.+.+.  +++|+|++=|...             .|+--+++.- ..     ....+.
T Consensus        71 ~~~~~ikVgINGF-GRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~  149 (442)
T PLN02237         71 ETVAKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIK  149 (442)
T ss_pred             cccceEEEEEECC-ChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEE
Confidence            3457799999998 99999999987755  6899999866210             0110000000 00     001122


Q ss_pred             ecC--CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHH-HHH----HH--HHHhhhcCCeEE
Q 022057           90 VMS--DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLE-TVS----AL--SAFCDKASMGCL  160 (303)
Q Consensus        90 v~~--dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e-~~~----~L--~~~a~~~~i~vv  160 (303)
                      ++.  +++++-=   .+.++|+|+++|-.....+.+...++.|...|+=+ .+..+ +..    .+  +.+..+ .-.++
T Consensus       150 V~~~~dp~~l~W---~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS-AP~~d~dvptvV~GVN~~~~~~~-~~~II  224 (442)
T PLN02237        150 VVSNRDPLKLPW---AELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT-APAKGADIPTYVVGVNEDDYDHE-VANIV  224 (442)
T ss_pred             EEEcCCchhCCh---hhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC-CCCCCCCCceEecccCHHHhCcC-CCCEE
Confidence            322  2223210   01479999999999988999999999997777655 32211 100    00  111111 02334


Q ss_pred             EcCCCcHHHHHHHHHHHHhccCC--CcEEEEEccC----C-CCCCCc
Q 022057          161 IAPTLSIGSILLQQAAISASFHY--KNVEIVESRP----N-ARDFPS  200 (303)
Q Consensus       161 ~a~N~SiGv~ll~~~a~~~~~~~--~dieIiE~Hh----~-K~DaPS  200 (303)
                        +|=|=-.|-|.-+++.+.+.+  ...-+.-.|-    + -.|.|+
T Consensus       225 --SnaSCTTNcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h  269 (442)
T PLN02237        225 --SNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASH  269 (442)
T ss_pred             --ECCchHHHHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCC
Confidence              555666666666666665432  1222344463    2 467773

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=97.73  E-value=0.0001  Score=70.95  Aligned_cols=100  Identities=21%  Similarity=0.185  Sum_probs=66.3

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhhh--cC--C-CCCCeeec--CC
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMVC--DM--E-QPLEIPVM--SD   93 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~~~~~--g~--~-~~~gv~v~--~d   93 (303)
                      |++||+|+|+ ||+||.+.+.+.+.+++|+|++=|...             .|+--+++.  +-  . ....++++  .|
T Consensus         1 m~~ki~INGf-GRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~d   79 (343)
T PRK07729          1 MKTKVAINGF-GRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRD   79 (343)
T ss_pred             CceEEEEECc-ChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCC
Confidence            6689999998 999999999988788999999866210             011000000  00  0 01123333  35


Q ss_pred             HHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (303)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT  137 (303)
                      ++++-=   .+.++|+|+++|-.....+.+...++.|...|+=+
T Consensus        80 p~~~~W---~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS  120 (343)
T PRK07729         80 PKELPW---TDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILT  120 (343)
T ss_pred             hhhCcc---cccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeC
Confidence            554420   01479999999999999999999999997777654

>PRK07680 late competence protein ComER; Validated

Probab=97.70  E-value=0.00032  Score=65.02  Aligned_cols=99  Identities=10%  Similarity=0.159  Sum_probs=64.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCC-CeeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      |||+|+|+ |.||+.+++.+.+...+  +-+.+++++.  .....+..   .+ ++.++.+.++++      .++|+||-
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~--~~~~~~~~---~~~g~~~~~~~~~~~------~~aDiVil   68 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTP--AKAYHIKE---RYPGIHVAKTIEEVI------SQSDLIFI   68 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCH--HHHHHHHH---HcCCeEEECCHHHHH------HhCCEEEE
Confidence            47999998 99999999998755322  3355677642  22222221   23 677778888877      37899998


Q ss_pred             cCCchhHHHHHHHHHH---cCCCeEEeCC-CCCHHHHHH
Q 022057          113 FTDASTVYDNVKQATA---FGMRSVVYVP-HIQLETVSA  147 (303)
Q Consensus       113 fT~p~a~~~~~~~al~---~g~~vVigTT-G~~~e~~~~  147 (303)
                      +..|..+.+.+.....   .+. +|+-.+ |.+.++++.
T Consensus        69 av~p~~~~~vl~~l~~~l~~~~-~iis~~ag~~~~~L~~  106 (273)
T PRK07680         69 CVKPLDIYPLLQKLAPHLTDEH-CLVSITSPISVEQLET  106 (273)
T ss_pred             ecCHHHHHHHHHHHHhhcCCCC-EEEEECCCCCHHHHHH
Confidence            8888888777765433   344 454444 676554443

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.70  E-value=0.0002  Score=70.05  Aligned_cols=100  Identities=12%  Similarity=0.147  Sum_probs=63.4

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHH-HhccccCCCccEEE
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMV-LGSISQSKARAVVI  111 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~-l~~~~~~~~~DVvI  111 (303)
                      .+++||+|+|+||..|+.+++.+.++|+++|+.+......|+......-.......+...+++.. +      .++|+|+
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~------~~~DvVf  109 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADF------SDVDAVF  109 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHh------cCCCEEE
Confidence            35789999999999999999999999999999987654444433221100000112212233322 3      3689998


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCCC
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVPH  139 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTTG  139 (303)
                      -+...+...+.+.. ++.|+.||-=++.
T Consensus       110 ~Alp~~~s~~i~~~-~~~g~~VIDlSs~  136 (381)
T PLN02968        110 CCLPHGTTQEIIKA-LPKDLKIVDLSAD  136 (381)
T ss_pred             EcCCHHHHHHHHHH-HhCCCEEEEcCch
Confidence            55555566777776 4788777655443

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.69  E-value=0.00052  Score=64.12  Aligned_cols=111  Identities=16%  Similarity=0.134  Sum_probs=71.8

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCCc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p  116 (303)
                      ||+|+|+ |.||+.++..+.+ .++++. ++|++.  .....+.    ..|....++.+++++      ++|+||.+.+.
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~aDivi~~vp~   65 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAK-AGYQLH-VTTIGP--EVADELL----AAGAVTAETARQVTE------QADVIFTMVPD   65 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCcccCCHHHHHh------cCCEEEEecCC
Confidence            6999997 9999999998884 578876 467642  2222222    345555678888873      79999977654


Q ss_pred             hh-HHHHH---HHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057          117 ST-VYDNV---KQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus       117 ~a-~~~~~---~~al---~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                      .. +.+.+   ..++   ..|. +|+-++..++...+++.+..++.++.++-+|
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~g~-iivd~st~~~~~~~~l~~~l~~~g~~~~~~p  118 (291)
T TIGR01505        66 SPQVEEVAFGENGIIEGAKPGK-TLVDMSSISPIESKRFAKAVKEKGIDYLDAP  118 (291)
T ss_pred             HHHHHHHHcCcchHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCCEEecC
Confidence            33 33332   1122   2333 4444555556666778888887788877766

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type

Probab=97.67  E-value=0.00051  Score=65.70  Aligned_cols=141  Identities=17%  Similarity=0.180  Sum_probs=93.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHH---hc-------------------CCcEEEEEEec--CCCCcchhhhhcCC--------
Q 022057           36 IKVIINGAVKEIGRAAVIAVT---KA-------------------RGMEVAGAIDS--HSVGEDIGMVCDME--------   83 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~---~~-------------------~~~eLvg~vd~--~~~g~d~~~~~g~~--------   83 (303)
                      +||+|+|- |+-.+.+++-+.   ..                   .|+|+|+++|.  ++.|+|+.+.+-..        
T Consensus         1 irvai~Gv-GncaSslvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafDVd~~KVGkdlseai~~~pN~t~~~~   79 (351)
T TIGR03450         1 VRVAIVGV-GNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFASENNTIKIA   79 (351)
T ss_pred             CeEEEEec-cHHHHHHHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEeccccccCccHHHHHhcCCCCceeee
Confidence            69999998 999999988653   11                   16799999985  56788887654221        


Q ss_pred             --CCCCeeec-----C---------------CHHHHHhccccCCCccEEEEcCC---chhHHHHHHHHHHcCCCeEEeCC
Q 022057           84 --QPLEIPVM-----S---------------DLTMVLGSISQSKARAVVIDFTD---ASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus        84 --~~~gv~v~-----~---------------dl~~~l~~~~~~~~~DVvIDfT~---p~a~~~~~~~al~~g~~vVigTT  138 (303)
                        .+.||.|.     +               ..+++.+. +++.++||+|.+-+   -++..-++..|++.|++.|-+||
T Consensus        80 ~vp~~~v~V~~G~~lDg~~~~~~~~~~~~~~~~~dv~~~-lk~~~~dVlvnylPvGs~~A~~~YA~AAl~aG~afVN~~P  158 (351)
T TIGR03450        80 DVPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQA-LKDAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNALP  158 (351)
T ss_pred             ccCCCCCEEeecccccchhhHhhccccccccCHHHHHHH-HHhcCCCEEEECCccchHHHHHHHHHHHHHcCCceEeccC
Confidence              11233321     1               12222221 23478999999753   45667788899999999999999


Q ss_pred             CCCHHHHHHHHHHhhhcCCeEEEcCCC-c-HHHHHHHHH-HHHhc
Q 022057          139 HIQLETVSALSAFCDKASMGCLIAPTL-S-IGSILLQQA-AISAS  180 (303)
Q Consensus       139 G~~~e~~~~L~~~a~~~~i~vv~a~N~-S-iGv~ll~~~-a~~~~  180 (303)
                      -+... ..++.+.++++|+|++ .--+ | +|..++.+. +..+.
T Consensus       159 ~~ia~-~p~~a~~f~e~glPi~-GDD~Ksq~GaTi~h~vLa~lf~  201 (351)
T TIGR03450       159 VFIAS-DPEWAKKFTDAGVPIV-GDDIKSQVGATITHRVLAKLFE  201 (351)
T ss_pred             ccccC-CHHHHHHHHHCCCCEe-cccccccCCCchHHHHHHHHHH
Confidence            65432 2457777888999844 3443 3 788877553 44443

This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.67  E-value=0.0003  Score=67.93  Aligned_cols=125  Identities=16%  Similarity=0.110  Sum_probs=79.1

Q ss_pred             CCCceeEEEEcCCcHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHH-HHHhccccCCCcc
Q 022057           32 PQSNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARA  108 (303)
Q Consensus        32 ~~~~ikV~V~G~~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~D  108 (303)
                      +.+++||+|+|++|..|+.+++.+.+  +|..+|..+......|+.... .+    ..+.+ .+++ +.+      .++|
T Consensus         4 ~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~-~~----~~~~v-~~~~~~~~------~~~D   71 (344)
T PLN02383          4 TENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF-EG----RDYTV-EELTEDSF------DGVD   71 (344)
T ss_pred             cCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee-cC----ceeEE-EeCCHHHH------cCCC
Confidence            45578999999999999999999987  788999887665444554432 11    12222 2222 334      3799


Q ss_pred             EEEEcCCchhHHHHHHHHHHcCCCeEEeC-------------CCCCHHHHHHHHHHhh-hcCCeEEEcCCCcHHHHH
Q 022057          109 VVIDFTDASTVYDNVKQATAFGMRSVVYV-------------PHIQLETVSALSAFCD-KASMGCLIAPTLSIGSIL  171 (303)
Q Consensus       109 VvIDfT~p~a~~~~~~~al~~g~~vVigT-------------TG~~~e~~~~L~~~a~-~~~i~vv~a~N~SiGv~l  171 (303)
                      +++-+...+...+.+..+.+.|+.||-=+             |.++.++   |...-. +....++-.||=+.-..+
T Consensus        72 ~vf~a~p~~~s~~~~~~~~~~g~~VIDlS~~fR~~~~~p~~vPEvn~~~---i~~~~~~~~~~~iIanPgC~~t~~~  145 (344)
T PLN02383         72 IALFSAGGSISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEA---MKHIKLGKGKGALIANPNCSTIICL  145 (344)
T ss_pred             EEEECCCcHHHHHHHHHHHhCCCEEEECCchhhcCCCCceECCCcCHHH---HHhhhhcccCCcEEECCCcHHHHHH
Confidence            99844555667888898989998877433             2234443   333211 111347877886655543

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.67  E-value=0.00048  Score=64.29  Aligned_cols=119  Identities=11%  Similarity=0.106  Sum_probs=74.5

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (303)
                      |.+||+++|+ |+||..+++.+.+..   ..++. ++|++.  ..+..+.   +++|+.++.+.++++      .++|+|
T Consensus         1 ~~~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~-v~~r~~--~~~~~l~---~~~g~~~~~~~~e~~------~~aDiI   67 (272)
T PRK12491          1 MNKQIGFIGC-GNMGIAMIGGMINKNIVSPDQII-CSDLNV--SNLKNAS---DKYGITITTNNNEVA------NSADIL   67 (272)
T ss_pred             CCCeEEEECc-cHHHHHHHHHHHHCCCCCCceEE-EECCCH--HHHHHHH---HhcCcEEeCCcHHHH------hhCCEE
Confidence            4568999998 999999999988642   12443 456542  2222222   235676777877877      378999


Q ss_pred             EEcCCchhHHHHHHHHHHc--CCCeEEe-CCCCCHHHHHHHHHHhhhcCCeE-EEcCCCcHHH
Q 022057          111 IDFTDASTVYDNVKQATAF--GMRSVVY-VPHIQLETVSALSAFCDKASMGC-LIAPTLSIGS  169 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~--g~~vVig-TTG~~~e~~~~L~~~a~~~~i~v-v~a~N~SiGv  169 (303)
                      |-+..|....+.+......  +..+|+- ..|.+-++++++   .... .++ =.-||...-+
T Consensus        68 iLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~---l~~~-~~vvR~MPN~~~~v  126 (272)
T PRK12491         68 ILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENE---FDRK-LKVIRVMPNTPVLV  126 (272)
T ss_pred             EEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHh---cCCC-CcEEEECCChHHHH
Confidence            9888998888877654432  2235544 448987665443   3211 222 2447776644

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=97.66  E-value=0.00032  Score=68.46  Aligned_cols=121  Identities=12%  Similarity=0.065  Sum_probs=75.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEE-ecCC---------CCc---------chhhhhcCCCCCCeeec---
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAI-DSHS---------VGE---------DIGMVCDMEQPLEIPVM---   91 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~v-d~~~---------~g~---------d~~~~~g~~~~~gv~v~---   91 (303)
                      |.||+|+|+||.+|+..++.+.+.| .++++++. +.+.         .+.         ...++.......++.++   
T Consensus         1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~   80 (385)
T PRK05447          1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE   80 (385)
T ss_pred             CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence            4689999999999999999998776 69999987 3210         000         00111000001122232   


Q ss_pred             CCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC-CCCCHHHHHHHHHHhhhcCCeEE
Q 022057           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT-TG~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      +.+.++++    ..++|+|+....-.+..+....|+++|++|.+.. .-+- ..-..|.++++++|..++
T Consensus        81 ~~~~~l~~----~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV-~aG~~i~~~a~~~g~~i~  145 (385)
T PRK05447         81 EGLCELAA----LPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLV-CAGELVMDAAKKSGAQIL  145 (385)
T ss_pred             hHHHHHhc----CCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHH-hhHHHHHHHHHHcCCeEE
Confidence            23445554    3578999988877777888999999999999843 2111 122346666666665544

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.66  E-value=0.00079  Score=63.40  Aligned_cols=116  Identities=16%  Similarity=0.164  Sum_probs=76.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |||+++|. |+||..+++.+.+ .++++. ++|++.   +...+.    ..|+....+..++.      ..+|+||-+.+
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~-~G~~v~-v~~~~~---~~~~~~----~~g~~~~~s~~~~~------~~advVi~~v~   64 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLAR-AGHQLH-VTTIGP---VADELL----SLGAVSVETARQVT------EASDIIFIMVP   64 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHH-CCCeEE-EEeCCH---hHHHHH----HcCCeecCCHHHHH------hcCCEEEEeCC
Confidence            38999997 9999999999874 567776 566542   122232    34566677888876      37899986654


Q ss_pred             ch-hHHHHHHH---HH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          116 AS-TVYDNVKQ---AT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       116 p~-a~~~~~~~---al---~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      .+ .+.+.+..   .+   ..| .+|+-++..+++..+++.+.+++.|+..+=+| +|=|.
T Consensus        65 ~~~~v~~v~~~~~g~~~~~~~g-~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaP-VsGg~  123 (292)
T PRK15059         65 DTPQVEEVLFGENGCTKASLKG-KTIVDMSSISPIETKRFARQVNELGGDYLDAP-VSGGE  123 (292)
T ss_pred             ChHHHHHHHcCCcchhccCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEEec-CCCCH
Confidence            33 34444321   12   223 46667777778888889888888888877666 44344

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.64  E-value=8e-05  Score=62.00  Aligned_cols=94  Identities=19%  Similarity=0.208  Sum_probs=52.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .+||+|+|+ ||+|+.+++.+. +.+++++++..++.  ........   ..+-..+.++++++      .++|+++ .|
T Consensus        10 ~l~I~iIGa-GrVG~~La~aL~-~ag~~v~~v~srs~--~sa~~a~~---~~~~~~~~~~~~~~------~~aDlv~-ia   75 (127)
T PF10727_consen   10 RLKIGIIGA-GRVGTALARALA-RAGHEVVGVYSRSP--ASAERAAA---FIGAGAILDLEEIL------RDADLVF-IA   75 (127)
T ss_dssp             --EEEEECT-SCCCCHHHHHHH-HTTSEEEEESSCHH---HHHHHHC-----TT-----TTGGG------CC-SEEE-E-
T ss_pred             ccEEEEECC-CHHHHHHHHHHH-HCCCeEEEEEeCCc--cccccccc---cccccccccccccc------ccCCEEE-EE
Confidence            589999998 999999999887 56899999887542  11122221   12222234566776      4799998 55


Q ss_pred             CchhH-HHHHHHHHHc----CCCeEEeCCCCCH
Q 022057          115 DASTV-YDNVKQATAF----GMRSVVYVPHIQL  142 (303)
Q Consensus       115 ~p~a~-~~~~~~al~~----g~~vVigTTG~~~  142 (303)
                      .|+.. .+........    .=.+|+=|.|-..
T Consensus        76 vpDdaI~~va~~La~~~~~~~g~iVvHtSGa~~  108 (127)
T PF10727_consen   76 VPDDAIAEVAEQLAQYGAWRPGQIVVHTSGALG  108 (127)
T ss_dssp             S-CCHHHHHHHHHHCC--S-TT-EEEES-SS--
T ss_pred             echHHHHHHHHHHHHhccCCCCcEEEECCCCCh
Confidence            55555 4555555444    1358888887544

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.63  E-value=0.00081  Score=63.85  Aligned_cols=124  Identities=16%  Similarity=0.215  Sum_probs=72.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC--------CcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~--------g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (303)
                      |||+|+|+ |.||..++..+.+ .+.++. +++++..        +.....+.+...+.++.++.++++.+.     .++
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~-~g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~   72 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSS-KKISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS-----DNA   72 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHH-CCCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh-----CCC
Confidence            48999998 9999999998875 466665 5665310        000000111111224556788887763     378


Q ss_pred             cEEEEcCCchhHHHHHHHHHH----cCCCeEEeCCCCCHHH----HHHHHHHhhhcCCeEEEcCCCcH
Q 022057          108 AVVIDFTDASTVYDNVKQATA----FGMRSVVYVPHIQLET----VSALSAFCDKASMGCLIAPTLSI  167 (303)
Q Consensus       108 DVvIDfT~p~a~~~~~~~al~----~g~~vVigTTG~~~e~----~~~L~~~a~~~~i~vv~a~N~Si  167 (303)
                      |++|-++.+..+.+.++....    .+.++|+-+-|+..+.    .+.+.+......+.++-.|+++.
T Consensus        73 Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~  140 (326)
T PRK14620         73 TCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAK  140 (326)
T ss_pred             CEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHH
Confidence            999988888877777766554    3456777666874311    12344443222233344777643

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.63  E-value=0.0005  Score=66.92  Aligned_cols=128  Identities=17%  Similarity=0.138  Sum_probs=79.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC------CcEEEEEEecCC--CCc-----------chhhhhcCCCCCCeeecCCHH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSHS--VGE-----------DIGMVCDMEQPLEIPVMSDLT   95 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~------~~eLvg~vd~~~--~g~-----------d~~~~~g~~~~~gv~v~~dl~   95 (303)
                      ++||+|+|+ |.+|.+++..+..+-      +.++.- +.++.  .++           +...+.|..-+-++..++|++
T Consensus        11 ~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~l-w~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~   88 (365)
T PTZ00345         11 PLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRM-WVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK   88 (365)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEE-EEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence            589999998 999999999988653      134332 22221  011           111122322233566688999


Q ss_pred             HHHhccccCCCccEEEEcCCchhHHHHHHHHHH-----cCCCeEEeCCCCCHHHH--HHHHHHhhh---cCCeEEEcCCC
Q 022057           96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATA-----FGMRSVVYVPHIQLETV--SALSAFCDK---ASMGCLIAPTL  165 (303)
Q Consensus        96 ~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~-----~g~~vVigTTG~~~e~~--~~L~~~a~~---~~i~vv~a~N~  165 (303)
                      +++      .++|+||-..+|..+.+.+.....     .+..+|+.+-|++.++.  ..+.+..++   ..+.++..|||
T Consensus        89 eav------~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~  162 (365)
T PTZ00345         89 EAV------EDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANV  162 (365)
T ss_pred             HHH------hcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCH
Confidence            888      479999988888888887776543     23456666668764331  122222221   34677899999


Q ss_pred             cHHHH
Q 022057          166 SIGSI  170 (303)
Q Consensus       166 SiGv~  170 (303)
                      +-=+.
T Consensus       163 A~Eva  167 (365)
T PTZ00345        163 ANDVA  167 (365)
T ss_pred             HHHHH
Confidence            98884

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=97.63  E-value=0.00038  Score=61.48  Aligned_cols=92  Identities=21%  Similarity=0.286  Sum_probs=69.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeec--CCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |.+|+|+|+ |++|++++..-- ++.++++++++|.+.      +..|. .-.+++++  ++++..+.+    .++|+.|
T Consensus        84 ~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~------~~VG~-~~~~v~V~~~d~le~~v~~----~dv~iai  151 (211)
T COG2344          84 TTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDP------DKVGT-KIGDVPVYDLDDLEKFVKK----NDVEIAI  151 (211)
T ss_pred             ceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCH------HHhCc-ccCCeeeechHHHHHHHHh----cCccEEE
Confidence            689999999 999999998654 367899999999642      12222 12346775  588888864    5889999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTT  138 (303)
                      -+.+.+.+-+.+....++|+.-+.--|
T Consensus       152 LtVPa~~AQ~vad~Lv~aGVkGIlNFt  178 (211)
T COG2344         152 LTVPAEHAQEVADRLVKAGVKGILNFT  178 (211)
T ss_pred             EEccHHHHHHHHHHHHHcCCceEEecc
Confidence            777777778888999999987766443

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.62  E-value=0.00095  Score=62.81  Aligned_cols=116  Identities=11%  Similarity=0.106  Sum_probs=75.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      |.||+++|. |.||..++..+.+ .++++. ++|++.  ....++.    ..++....++++++      .++|+||-+.
T Consensus         1 m~~Ig~IGl-G~mG~~mA~~l~~-~G~~V~-v~d~~~--~~~~~~~----~~g~~~~~s~~~~~------~~aDvVi~~v   65 (296)
T PRK15461          1 MAAIAFIGL-GQMGSPMASNLLK-QGHQLQ-VFDVNP--QAVDALV----DKGATPAASPAQAA------AGAEFVITML   65 (296)
T ss_pred             CCeEEEEee-CHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HcCCcccCCHHHHH------hcCCEEEEec
Confidence            358999997 9999999998874 467764 577642  2223332    23555677888877      4789999777


Q ss_pred             Cchh-HHHHHH------HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057          115 DAST-VYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus       115 ~p~a-~~~~~~------~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                      +++. +.+.+.      ..+..|. +++-++..+++..+++.+..++.++..+=+|-+.
T Consensus        66 p~~~~~~~vl~~~~~i~~~l~~g~-lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g  123 (296)
T PRK15461         66 PNGDLVRSVLFGENGVCEGLSRDA-LVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR  123 (296)
T ss_pred             CCHHHHHHHHcCcccHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCC
Confidence            6654 333321      1123343 4455555556777888888888888877666654

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=97.62  E-value=0.00032  Score=67.51  Aligned_cols=92  Identities=14%  Similarity=0.094  Sum_probs=67.0

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      +.+||+|+|+||-.|+.+++.+.+  .|..+|..+......|+... +.+    ..+++. ++++..-     .++|+++
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-~~~----~~~~v~-~~~~~~~-----~~~Dvvf   71 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-FGG----KSVTVQ-DAAEFDW-----SQAQLAF   71 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-ECC----cceEEE-eCchhhc-----cCCCEEE
Confidence            358999999999999999999998  79999998876555566554 211    134443 4444321     3689998


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEe
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVY  136 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVig  136 (303)
                      -+++.+...+.+..+.++|+.||-=
T Consensus        72 ~a~p~~~s~~~~~~~~~~g~~VIDl   96 (336)
T PRK08040         72 FVAGREASAAYAEEATNAGCLVIDS   96 (336)
T ss_pred             ECCCHHHHHHHHHHHHHCCCEEEEC
Confidence            5566677789999999999977643

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=97.61  E-value=0.00014  Score=71.18  Aligned_cols=136  Identities=17%  Similarity=0.121  Sum_probs=82.6

Q ss_pred             CCCCceeEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCc---c----hhhhhcCCCCCCe
Q 022057           31 PPQSNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGE---D----IGMVCDMEQPLEI   88 (303)
Q Consensus        31 ~~~~~ikV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~~~-------------~g~---d----~~~~~g~~~~~gv   88 (303)
                      .+.|++||+|+|+ ||+||.+.+.+.+.  +..+|+++=|...             .|+   +    .+...-. ....+
T Consensus        56 ~~~~~~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v-~gk~I  133 (395)
T PLN03096         56 VTEAKIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISV-DGKVI  133 (395)
T ss_pred             ccccccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEE-CCEEE
Confidence            3457799999998 99999999998866  6899998754210             000   0    0000000 01123


Q ss_pred             eecC--CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC-----------CCCHHHHHHHHHHhhhc
Q 022057           89 PVMS--DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-----------HIQLETVSALSAFCDKA  155 (303)
Q Consensus        89 ~v~~--dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT-----------G~~~e~~~~L~~~a~~~  155 (303)
                      +++.  |++++-=   .+.++|+|+++|-.....+.+...++.|...|+=+.           |.++++   +.   .+ 
T Consensus       134 ~v~~~~dp~~~~w---~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~---l~---~~-  203 (395)
T PLN03096        134 KVVSDRNPLNLPW---GELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADD---YK---HS-  203 (395)
T ss_pred             EEEEcCCcccccc---cccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHH---hc---cC-
Confidence            3332  3444320   114799999999988889999999999976665442           223332   21   12 


Q ss_pred             CCeEEEcCCCcHHHHHHHHHHHHhcc
Q 022057          156 SMGCLIAPTLSIGSILLQQAAISASF  181 (303)
Q Consensus       156 ~i~vv~a~N~SiGv~ll~~~a~~~~~  181 (303)
                       -.++  +|=|=-.|-|.-+++.+.+
T Consensus       204 -~~II--SnaSCTTn~LAp~lkvL~~  226 (395)
T PLN03096        204 -DPII--SNASCTTNCLAPFVKVLDQ  226 (395)
T ss_pred             -CCEE--ECCchHHHHHHHHHHHHHH
Confidence             2333  6777777777666666654

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.59  E-value=0.00012  Score=70.56  Aligned_cols=126  Identities=16%  Similarity=0.175  Sum_probs=77.2

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcC-------CcEEEEEEecCC-------------CCcchhhhhcCCCCCCeeecCCHHH
Q 022057           37 KVIINGAVKEIGRAAVIAVTKAR-------GMEVAGAIDSHS-------------VGEDIGMVCDMEQPLEIPVMSDLTM   96 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~-------~~eLvg~vd~~~-------------~g~d~~~~~g~~~~~gv~v~~dl~~   96 (303)
                      ||+|+|+ |.+|.+++..+..+.       +.++.- +.++.             .......+.|..-+-++..++|+++
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~l-w~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~e   78 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRM-WVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVE   78 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEE-EEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHH
Confidence            6999998 999999999887532       144332 32210             0011111222211224567789999


Q ss_pred             HHhccccCCCccEEEEcCCchhHHHHHHHH---HHcCCCeEEeCCCCCHH--HHHHHHHHhh---hcCCeEEEcCCCcHH
Q 022057           97 VLGSISQSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLE--TVSALSAFCD---KASMGCLIAPTLSIG  168 (303)
Q Consensus        97 ~l~~~~~~~~~DVvIDfT~p~a~~~~~~~a---l~~g~~vVigTTG~~~e--~~~~L~~~a~---~~~i~vv~a~N~SiG  168 (303)
                      ++      .++|++|-..++..+.+.+...   ++.+.++|+.|-|+..+  ....+.+..+   ...+.++..|||+.-
T Consensus        79 al------~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~E  152 (342)
T TIGR03376        79 AA------KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLANE  152 (342)
T ss_pred             HH------hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHHH
Confidence            88      4799998777777776656554   45577788877798765  3222222221   234777899999887


Q ss_pred             HH
Q 022057          169 SI  170 (303)
Q Consensus       169 v~  170 (303)
                      +.
T Consensus       153 va  154 (342)
T TIGR03376       153 VA  154 (342)
T ss_pred             HH
Confidence            75

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.56  E-value=0.00063  Score=62.83  Aligned_cols=93  Identities=9%  Similarity=0.050  Sum_probs=62.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~---~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      |||+++|+ |.||..+++.+.+...   -++.+ .+++.            ...++....+..+++      .++|+||-
T Consensus         4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~-~~~~~------------~~~~~~~~~~~~~~~------~~~D~Vil   63 (260)
T PTZ00431          4 IRVGFIGL-GKMGSALAYGIENSNIIGKENIYY-HTPSK------------KNTPFVYLQSNEELA------KTCDIIVL   63 (260)
T ss_pred             CEEEEECc-cHHHHHHHHHHHhCCCCCcceEEE-ECCCh------------hcCCeEEeCChHHHH------HhCCEEEE
Confidence            68999998 9999999999986532   12433 44431            012233445666666      37899999


Q ss_pred             cCCchhHHHHHHHHHH--cCCCeEEeCCCCCHHHHHHH
Q 022057          113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSAL  148 (303)
Q Consensus       113 fT~p~a~~~~~~~al~--~g~~vVigTTG~~~e~~~~L  148 (303)
                      +..|....+.+.....  .+..+|+-..|.+.++++.+
T Consensus        64 avkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~  101 (260)
T PTZ00431         64 AVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEM  101 (260)
T ss_pred             EeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHH
Confidence            9999988888876553  24456666668987665554

>PLN02712 arogenate dehydrogenase

Probab=97.55  E-value=0.0011  Score=69.31  Aligned_cols=128  Identities=17%  Similarity=0.162  Sum_probs=80.8

Q ss_pred             EEEeecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhcccc
Q 022057           24 FISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQ  103 (303)
Q Consensus        24 ~~~~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~  103 (303)
                      .-+|..+.  +++||+|+|+ |+||+.+++.+.+ .+.+++ ++|++.   ... .+   .+.|+..+.++++++.    
T Consensus       360 ~~~~~~~~--~~~kIgIIGl-G~mG~slA~~L~~-~G~~V~-~~dr~~---~~~-~a---~~~Gv~~~~~~~el~~----  423 (667)
T PLN02712        360 VSGCVNDG--SKLKIAIVGF-GNFGQFLAKTMVK-QGHTVL-AYSRSD---YSD-EA---QKLGVSYFSDADDLCE----  423 (667)
T ss_pred             hhhccCCC--CCCEEEEEec-CHHHHHHHHHHHH-CcCEEE-EEECCh---HHH-HH---HHcCCeEeCCHHHHHh----
Confidence            34555554  4579999997 9999999999875 567877 566542   111 11   1355666788888774    


Q ss_pred             CCCccEEEEcCCchhHHHHHHHHHH--cC-CCeEEeCCCCCHHHHHHHHHHhhhcCCeEE-EcCCCcHHH
Q 022057          104 SKARAVVIDFTDASTVYDNVKQATA--FG-MRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGS  169 (303)
Q Consensus       104 ~~~~DVvIDfT~p~a~~~~~~~al~--~g-~~vVigTTG~~~e~~~~L~~~a~~~~i~vv-~a~N~SiGv  169 (303)
                       ..+|+||-+++|....+.+.....  .+ -.+|+-.+.-...-.+.+.++... +..++ .-|+++...
T Consensus       424 -~~aDvVILavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~-~~~~v~~HPm~G~e~  491 (667)
T PLN02712        424 -EHPEVILLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ-DFDILCTHPMFGPES  491 (667)
T ss_pred             -cCCCEEEECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC-CCceEeeCCCCCccc
Confidence             358999989888888887776543  21 235655543333334445554432 45555 677776543

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.54  E-value=0.00052  Score=64.02  Aligned_cols=103  Identities=14%  Similarity=0.132  Sum_probs=73.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC--cEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG--MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~--~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      |+||+++|+ |+||+.++.-+.+...  -+-+-+.++..  .....+.   ..+|+.++++.+++.      ...|+|+-
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~--e~~~~l~---~~~g~~~~~~~~~~~------~~advv~L   68 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSE--EKRAALA---AEYGVVTTTDNQEAV------EEADVVFL   68 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCH--HHHHHHH---HHcCCcccCcHHHHH------hhCCEEEE
Confidence            579999998 9999999999987652  23444555532  1111233   367777667777776      47999999


Q ss_pred             cCCchhHHHHHHHHH--HcCCCeEEeCCCCCHHHHHHHH
Q 022057          113 FTDASTVYDNVKQAT--AFGMRSVVYVPHIQLETVSALS  149 (303)
Q Consensus       113 fT~p~a~~~~~~~al--~~g~~vVigTTG~~~e~~~~L~  149 (303)
                      .-.|....+.+....  ..++.+|+=.-|.+-++++.+.
T Consensus        69 avKPq~~~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l  107 (266)
T COG0345          69 AVKPQDLEEVLSKLKPLTKDKLVISIAAGVSIETLERLL  107 (266)
T ss_pred             EeChHhHHHHHHHhhcccCCCEEEEEeCCCCHHHHHHHc
Confidence            999999888888775  4677777777799887655543

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.54  E-value=0.0012  Score=63.16  Aligned_cols=124  Identities=15%  Similarity=0.123  Sum_probs=81.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHh-cCCcEEEEEEec-CCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~-~~~~eLvg~vd~-~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      |+||||+|+||-+|+.+++.+.+ ++.++.+.++-+ +..|+...++.++  .  +.+-++..+...    ..++|+++ 
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~--~--~~v~~~~~~~~~----~~~~Divf-   71 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGK--S--IGVPEDAADEFV----FSDVDIVF-   71 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCc--c--ccCccccccccc----cccCCEEE-
Confidence            57999999999999999999988 788886666654 4567765555543  2  233222222221    14789887 


Q ss_pred             cCC-chhHHHHHHHHHHcCCCeEEeCCCCCHH----------HHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          113 FTD-ASTVYDNVKQATAFGMRSVVYVPHIQLE----------TVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       113 fT~-p~a~~~~~~~al~~g~~vVigTTG~~~e----------~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      |+. -+...++...+.++|+.||--++.|-.+          ..+.|.+.-+ +| .++--||=|.-.
T Consensus        72 ~~ag~~~s~~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~-rg-~IianpNCst~~  137 (334)
T COG0136          72 FAAGGSVSKEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQK-RG-FIIANPNCSTIQ  137 (334)
T ss_pred             EeCchHHHHHHHHHHHHcCCEEEeCCcccccCCCCCEecCCcCHHHHHhhhh-CC-CEEECCChHHHH
Confidence            665 4666999999999998877666544211          1223554444 33 588889988765

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=97.54  E-value=0.00022  Score=68.55  Aligned_cols=99  Identities=17%  Similarity=0.180  Sum_probs=63.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCcchhhhh--cCC---CCCCeeecC--
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGEDIGMVC--DME---QPLEIPVMS--   92 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~~~-------------~g~d~~~~~--g~~---~~~gv~v~~--   92 (303)
                      |+||+|+|+ ||+||.+.+.+.+.  +++|+|++-|...             .|+--+++.  +..   ....+.++.  
T Consensus         1 ~~ki~INGf-GRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~   79 (337)
T PRK07403          1 MIRVAINGF-GRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDR   79 (337)
T ss_pred             CeEEEEEcc-ChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcC
Confidence            689999998 99999999997766  5899999876310             011000000  000   011233332  


Q ss_pred             CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (303)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT  137 (303)
                      |++++-=   .+.++|+|+++|......+.+...++.|...|+=+
T Consensus        80 dp~~~~W---~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iS  121 (337)
T PRK07403         80 NPLNLPW---KEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLIT  121 (337)
T ss_pred             CcccCCh---hhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeC
Confidence            3333310   01379999999988888999999999997666544

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.52  E-value=0.0007  Score=63.96  Aligned_cols=105  Identities=20%  Similarity=0.140  Sum_probs=64.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .|||+|+|+ |.||+.+++.+.. .++++. +++++.                   ..++++++      .++|+||-+.
T Consensus         4 ~m~I~iiG~-G~~G~~lA~~l~~-~G~~V~-~~~r~~-------------------~~~~~~~~------~~advvi~~v   55 (308)
T PRK14619          4 PKTIAILGA-GAWGSTLAGLASA-NGHRVR-VWSRRS-------------------GLSLAAVL------ADADVIVSAV   55 (308)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHH-CCCEEE-EEeCCC-------------------CCCHHHHH------hcCCEEEEEC
Confidence            478999997 9999999998874 567775 566542                   03466776      3789999776


Q ss_pred             CchhHHHHHHHHHH----cCCCeEEeCCCCCHHHHHHHHHHhhh--cCCeEE--EcCCCcH
Q 022057          115 DASTVYDNVKQATA----FGMRSVVYVPHIQLETVSALSAFCDK--ASMGCL--IAPTLSI  167 (303)
Q Consensus       115 ~p~a~~~~~~~al~----~g~~vVigTTG~~~e~~~~L~~~a~~--~~i~vv--~a~N~Si  167 (303)
                      +.+.+.+.+.....    .++-+|..|+|++++....+.+..+.  .+.|++  -.|+++-
T Consensus        56 p~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~  116 (308)
T PRK14619         56 SMKGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSK  116 (308)
T ss_pred             ChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHH
Confidence            66555665554432    24556666667765432222222211  123443  6777663

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.45  E-value=0.00077  Score=65.18  Aligned_cols=117  Identities=16%  Similarity=0.225  Sum_probs=75.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCeeec-CCHHHHHhccccCCCccEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVv  110 (303)
                      .+||+|+|+||-.|+.+++.+.++|+++   |..+......|+... +.+   . .+.+. .+.++ +      .++|++
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~-~~~---~-~l~v~~~~~~~-~------~~~Div   72 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQ-FKG---R-EIIIQEAKINS-F------EGVDIA   72 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCee-eCC---c-ceEEEeCCHHH-h------cCCCEE
Confidence            3799999999999999999998899998   555554444455442 221   1 33332 13333 3      368998


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCeEEeC-------------CCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHH
Q 022057          111 IDFTDASTVYDNVKQATAFGMRSVVYV-------------PHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~vVigT-------------TG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~l  171 (303)
                      +=++..+...+.+..+.++|+.||-=+             |.++.+   .|..   +  ..++-.||=+.-..+
T Consensus        73 f~a~~~~~s~~~~~~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e---~i~~---~--~~iIanPnC~tt~~~  138 (347)
T PRK06728         73 FFSAGGEVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAH---TLKE---H--KGIIAVPNCSALQMV  138 (347)
T ss_pred             EECCChHHHHHHHHHHHHCCCEEEECchhhcCCCCCCeEeCCcCHH---HHhc---c--CCEEECCCCHHHHHH
Confidence            845566777889999999998777433             223333   3332   1  246888887766543

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=97.44  E-value=0.0004  Score=66.60  Aligned_cols=98  Identities=21%  Similarity=0.192  Sum_probs=62.3

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhc---CCcEEEEEEecCCCC-------cc--hhhh------hcCC---CCCCeeec--CC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSVG-------ED--IGMV------CDME---QPLEIPVM--SD   93 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~---~~~eLvg~vd~~~~g-------~d--~~~~------~g~~---~~~gv~v~--~d   93 (303)
                      ||||+|+ ||+||.+.+.+.+.   ++++++++-|.....       .|  -+.+      .|..   ....+.++  .+
T Consensus         1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~   79 (325)
T TIGR01532         1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT   79 (325)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence            6999998 99999999998865   469999988732100       00  0000      0000   00123333  35


Q ss_pred             HHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeE-EeCC
Q 022057           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSV-VYVP  138 (303)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vV-igTT  138 (303)
                      ++++-=   .+.++|+|+++|.+....+.+..++++|..+| +..+
T Consensus        80 p~~~~w---~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP  122 (325)
T TIGR01532        80 PEALPW---RALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHP  122 (325)
T ss_pred             hhhccc---cccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCC
Confidence            554321   11479999999999999999999999995444 4444

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=97.44  E-value=0.00035  Score=67.24  Aligned_cols=99  Identities=22%  Similarity=0.261  Sum_probs=63.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc---CCcEEEEEEecC-------------CCCc---ch---hhhhcCCCCCCeeec-
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSH-------------SVGE---DI---GMVCDMEQPLEIPVM-   91 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~---~~~eLvg~vd~~-------------~~g~---d~---~~~~g~~~~~gv~v~-   91 (303)
                      |+||+|+|+ ||+||.+.+.+.+.   ++++|+++=|..             ..|+   +.   +...-. ....+.++ 
T Consensus         1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v-~g~~i~v~~   78 (336)
T PRK13535          1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFV-GDDAIRLLH   78 (336)
T ss_pred             CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEE-CCEEEEEEE
Confidence            579999999 99999999998864   579999876411             0010   00   000000 01123333 


Q ss_pred             -CCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT  138 (303)
                       .+++++-=   .+.++|+|+++|......+.+..++++|...|+=+.
T Consensus        79 ~~~p~~~~w---~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSa  123 (336)
T PRK13535         79 ERDIASLPW---RELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSH  123 (336)
T ss_pred             cCCcccCcc---cccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecC
Confidence             24444320   014899999999999999999999999976666543

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.43  E-value=0.00093  Score=63.90  Aligned_cols=128  Identities=17%  Similarity=0.205  Sum_probs=82.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEE-EEEecC------CCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVA-GAIDSH------SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLv-g~vd~~------~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (303)
                      |+||+|+|+ |..|.+++..+.++ +.++. .+.|..      ...+....+-|..-+-++..++|++++++      ++
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~n-g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~------~a   72 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARN-GHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD------GA   72 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhc-CCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh------cC
Confidence            579999998 99999999988865 33333 333310      00011112223222445667899999984      69


Q ss_pred             cEEEEcCCchhHHHHHHH---HHHcCCCeEEeCCCCCHHHHHHHHHHhhh----cCCeEEEcCCCcHHHH
Q 022057          108 AVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDK----ASMGCLIAPTLSIGSI  170 (303)
Q Consensus       108 DVvIDfT~p~a~~~~~~~---al~~g~~vVigTTG~~~e~~~~L~~~a~~----~~i~vv~a~N~SiGv~  170 (303)
                      |+++-..+.....+.++.   .+..+.++|+.|-|+.++..+.+.+..++    ..+.++-.|||+-=+.
T Consensus        73 d~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa  142 (329)
T COG0240          73 DIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVA  142 (329)
T ss_pred             CEEEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHh
Confidence            999866665666666655   45788899998889876544444444332    2377888999987775

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=97.37  E-value=0.0019  Score=60.36  Aligned_cols=108  Identities=15%  Similarity=0.150  Sum_probs=73.3

Q ss_pred             EEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCCc-hh
Q 022057           40 INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA-ST  118 (303)
Q Consensus        40 V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p-~a  118 (303)
                      ++|. |.||..+++.+.+ .++++. ++|++.  .....+.    +.|+...++++++++      ++|+||-+-++ +.
T Consensus         1 ~IGl-G~mG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~g~~~~~s~~~~~~------~advVil~vp~~~~   65 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLK-AGHPVR-VFDLFP--DAVEEAV----AAGAQAAASPAEAAE------GADRVITMLPAGQH   65 (288)
T ss_pred             CCcc-cHhHHHHHHHHHh-CCCeEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCCChHH
Confidence            4797 9999999999874 567765 467642  2223332    346667788888874      78999977765 44


Q ss_pred             HHHHH---HHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057          119 VYDNV---KQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus       119 ~~~~~---~~al---~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                      +.+.+   ....   ..| .+|+-+++.+++..+++.+.+++.|+..+=+|
T Consensus        66 ~~~v~~g~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~~~vdaP  115 (288)
T TIGR01692        66 VISVYSGDEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGAVFMDAP  115 (288)
T ss_pred             HHHHHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEECC
Confidence            44444   2222   333 36666678888888899998888888876665

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.36  E-value=0.00092  Score=61.37  Aligned_cols=95  Identities=21%  Similarity=0.318  Sum_probs=57.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC--------C----cchhhhhcC-CCCCC----eee-------c
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------G----EDIGMVCDM-EQPLE----IPV-------M   91 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~--------g----~d~~~~~g~-~~~~g----v~v-------~   91 (303)
                      |+|+++|. ||||..+++.+. +.++++|+ +|.+..        |    ..+.+++.. ..+.-    +|.       .
T Consensus         1 M~iGmiGL-GrMG~n~v~rl~-~~ghdvV~-yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi   77 (300)
T COG1023           1 MQIGMIGL-GRMGANLVRRLL-DGGHDVVG-YDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI   77 (300)
T ss_pred             Ccceeecc-chhhHHHHHHHH-hCCCeEEE-EcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH
Confidence            58999997 999999999988 56888886 564210        0    011112110 00100    111       1


Q ss_pred             CCHHHHHhccccCCCccEEEEc--CCchhHHHHHHHHHHcCCCeE-EeCCC
Q 022057           92 SDLTMVLGSISQSKARAVVIDF--TDASTVYDNVKQATAFGMRSV-VYVPH  139 (303)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVvIDf--T~p~a~~~~~~~al~~g~~vV-igTTG  139 (303)
                      +++...|      ..-|+|||-  |+-.......+.+.+.|++.+ +||+|
T Consensus        78 ~~la~~L------~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG  122 (300)
T COG1023          78 DDLAPLL------SAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG  122 (300)
T ss_pred             HHHHhhc------CCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCC
Confidence            2233333      346999996  455556667777899999998 77764

>PLN02256 arogenate dehydrogenase

Probab=97.32  E-value=0.0033  Score=59.69  Aligned_cols=103  Identities=15%  Similarity=0.084  Sum_probs=66.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ++||+|+|+ |.||+.+++.+.+ .+.++.+ +|++..    .+.+   ...|+..+.+.++++.     .++|+||-++
T Consensus        36 ~~kI~IIG~-G~mG~slA~~L~~-~G~~V~~-~d~~~~----~~~a---~~~gv~~~~~~~e~~~-----~~aDvVilav  100 (304)
T PLN02256         36 KLKIGIVGF-GNFGQFLAKTFVK-QGHTVLA-TSRSDY----SDIA---AELGVSFFRDPDDFCE-----EHPDVVLLCT  100 (304)
T ss_pred             CCEEEEEee-CHHHHHHHHHHHh-CCCEEEE-EECccH----HHHH---HHcCCeeeCCHHHHhh-----CCCCEEEEec
Confidence            579999997 9999999998875 4678774 665421    1222   2356666788888763     3689999999


Q ss_pred             CchhHHHHHHHH-HHc--CCCeEEeCCCCCHHHHHHHHHHh
Q 022057          115 DASTVYDNVKQA-TAF--GMRSVVYVPHIQLETVSALSAFC  152 (303)
Q Consensus       115 ~p~a~~~~~~~a-l~~--g~~vVigTTG~~~e~~~~L~~~a  152 (303)
                      +|....+.+... ...  .-.+|+-.......-.+.+.+..
T Consensus       101 p~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l  141 (304)
T PLN02256        101 SILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVL  141 (304)
T ss_pred             CHHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhC
Confidence            998888877765 221  22355444333223344455443

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=97.30  E-value=0.0011  Score=63.94  Aligned_cols=86  Identities=13%  Similarity=0.138  Sum_probs=60.1

Q ss_pred             eEEEEcCCcHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHH-HHHhccccCCCccEEEEc
Q 022057           37 KVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDF  113 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVvIDf  113 (303)
                      ||+|+|++|..|+.+++.+.+  .|..+|+.+......|+... +.+    ..+. ..+++ +.+      .++|+++.+
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~-~~~----~~~~-~~~~~~~~~------~~~D~v~~a   68 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT-FKG----KELE-VNEAKIESF------EGIDIALFS   68 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee-eCC----eeEE-EEeCChHHh------cCCCEEEEC
Confidence            689999999999999999887  67788876655444444432 111    1122 22222 223      379999988


Q ss_pred             CCchhHHHHHHHHHHcCCCeE
Q 022057          114 TDASTVYDNVKQATAFGMRSV  134 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vV  134 (303)
                      +......+.+..+++.|+.+|
T Consensus        69 ~g~~~s~~~a~~~~~~G~~VI   89 (339)
T TIGR01296        69 AGGSVSKEFAPKAAKCGAIVI   89 (339)
T ss_pred             CCHHHHHHHHHHHHHCCCEEE
Confidence            888888999999999998655

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.24  E-value=0.0015  Score=59.44  Aligned_cols=119  Identities=18%  Similarity=0.217  Sum_probs=77.1

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCCC-ee-----ecCCHHHHHhccc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLE-IP-----VMSDLTMVLGSIS  102 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~~~~~g-v~-----v~~dl~~~l~~~~  102 (303)
                      +.+||+|.|+ |++|+.+++.+. ..+++++++.|+     +..|-|..++.....+.+ +.     .+-+.++++.   
T Consensus        30 ~~~~v~I~G~-G~VG~~~a~~L~-~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~---  104 (227)
T cd01076          30 AGARVAIQGF-GNVGSHAARFLH-EAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLE---  104 (227)
T ss_pred             cCCEEEEECC-CHHHHHHHHHHH-HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCcccee---
Confidence            4589999997 999999999887 469999999996     233556655442211111 11     1113355554   


Q ss_pred             cCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCCeEEEcCCCcHH
Q 022057          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (303)
Q Consensus       103 ~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT--G~~~e~~~~L~~~a~~~~i~vv~a~N~SiG  168 (303)
                        .++||+|.++.+... .+++.   +....+|+|-.  .++++..+.|    +++  .+++.|-|..-
T Consensus       105 --~~~Dvlip~a~~~~i~~~~~~---~l~a~~I~egAN~~~t~~a~~~L----~~r--Gi~~~PD~~aN  162 (227)
T cd01076         105 --LDCDILIPAALENQITADNAD---RIKAKIIVEAANGPTTPEADEIL----HER--GVLVVPDILAN  162 (227)
T ss_pred             --ecccEEEecCccCccCHHHHh---hceeeEEEeCCCCCCCHHHHHHH----HHC--CCEEEChHHhc
Confidence              589999999977665 44444   44699999976  3665433333    343  55787887653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=97.23  E-value=0.0017  Score=61.75  Aligned_cols=77  Identities=14%  Similarity=0.110  Sum_probs=59.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      -||+|+|++|-+|..+++.+..+|++||+.+......           .      ..+.++++      .++|+++-+++
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~-----------~------~~~~~~~~------~~~D~vFlalp   58 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK-----------D------AAERAKLL------NAADVAILCLP   58 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc-----------C------cCCHhHhh------cCCCEEEECCC
Confidence            3899999999999999999999999999998754310           0      01334454      36899986666


Q ss_pred             chhHHHHHHHHHHcCCCeEE
Q 022057          116 ASTVYDNVKQATAFGMRSVV  135 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~vVi  135 (303)
                      .+...+.+..+.+.|+.||-
T Consensus        59 ~~~s~~~~~~~~~~g~~VID   78 (310)
T TIGR01851        59 DDAAREAVSLVDNPNTCIID   78 (310)
T ss_pred             HHHHHHHHHHHHhCCCEEEE
Confidence            77778999988888987663

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.23  E-value=0.0056  Score=58.81  Aligned_cols=128  Identities=11%  Similarity=0.084  Sum_probs=72.5

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC------CCcchhhhh-cCCCCCCeeecCCHHHHHhccccCCC
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------VGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSKA  106 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~------~g~d~~~~~-g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (303)
                      .|+||+|+|+ |.||..++..+.+.. .......++..      .+.....+. +..-+..+.+++|+++++      .+
T Consensus         6 ~~mkI~IiGa-Ga~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~------~~   77 (341)
T PRK12439          6 REPKVVVLGG-GSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAA------NC   77 (341)
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHH------hc
Confidence            3689999998 999999999888653 22222222110      011100010 100012345677888877      47


Q ss_pred             ccEEEEcCCchhHHHHHHHHHH---cCCCeEEeCCCCCHHH----HHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          107 RAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLET----VSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~~~al~---~g~~vVigTTG~~~e~----~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      +|+||-++++..+.+.++....   .+.++|+-+-|+..+.    .+.|.+........++..||++--+
T Consensus        78 aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev  147 (341)
T PRK12439         78 ADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREV  147 (341)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHH
Confidence            8999988887777666665543   3445666555876421    1233333222235577889988743

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.22  E-value=0.0049  Score=61.99  Aligned_cols=115  Identities=13%  Similarity=0.151  Sum_probs=70.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      |.+|+|+|. |.||+.++..+.+ .+++|. ++|++.  ....++.......|  +..+.+++++++++   .++|+||-
T Consensus         1 ~~~IgvIGL-G~MG~~lA~nL~~-~G~~V~-v~dr~~--~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l---~~~d~Iil   72 (470)
T PTZ00142          1 MSDIGLIGL-AVMGQNLALNIAS-RGFKIS-VYNRTY--EKTEEFVKKAKEGNTRVKGYHTLEELVNSL---KKPRKVIL   72 (470)
T ss_pred             CCEEEEEeE-hHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHHHhhhhcCCcceecCCHHHHHhcC---CCCCEEEE
Confidence            468999997 9999999999884 577755 577642  12222221001113  44578999988531   35897776


Q ss_pred             c-CCchhHHHHHH---HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCe
Q 022057          113 F-TDASTVYDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMG  158 (303)
Q Consensus       113 f-T~p~a~~~~~~---~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~  158 (303)
                      + ++++.+.+.+.   ..++.|.-+|-++|++..+..+.. +..++.|+.
T Consensus        73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~-~~l~~~Gi~  121 (470)
T PTZ00142         73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRI-KRCEEKGIL  121 (470)
T ss_pred             EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHH-HHHHHcCCe
Confidence            6 45555555543   345667777777777655443444 444445555

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=97.21  E-value=0.0013  Score=61.06  Aligned_cols=126  Identities=13%  Similarity=0.267  Sum_probs=76.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee------cCCHHHHHhccccCCCccE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV------MSDLTMVLGSISQSKARAV  109 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v------~~dl~~~l~~~~~~~~~DV  109 (303)
                      |||.|.|+||- |+.+++.+.+ .++++++.+.... +...-  .   ...+.++      ..++.+.+.+    .++|+
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~-~g~~v~~s~~t~~-~~~~~--~---~~g~~~v~~g~l~~~~l~~~l~~----~~i~~   68 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIA-QGIEILVTVTTSE-GKHLY--P---IHQALTVHTGALDPQELREFLKR----HSIDI   68 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHh-CCCeEEEEEccCC-ccccc--c---ccCCceEEECCCCHHHHHHHHHh----cCCCE
Confidence            58999999987 9999998875 4688887665432 21111  0   0011222      2245555543    68999


Q ss_pred             EEEcCCchhH---HHHHHHHHHcCCCeEEe-CCCC------C-HHHHHHHHHHhhh---cCCeEEEcCCCcHHHHHHHHH
Q 022057          110 VIDFTDASTV---YDNVKQATAFGMRSVVY-VPHI------Q-LETVSALSAFCDK---ASMGCLIAPTLSIGSILLQQA  175 (303)
Q Consensus       110 vIDfT~p~a~---~~~~~~al~~g~~vVig-TTG~------~-~e~~~~L~~~a~~---~~i~vv~a~N~SiGv~ll~~~  175 (303)
                      |||+|+|-+.   ......|.+.|+|.+== =+.|      . -+..++..+++.+   .+-.++.    ++|+.-|..+
T Consensus        69 VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~~~~~~~~~v~~~~ea~~~~~~~~~~~~~i~l----ttG~k~l~~f  144 (256)
T TIGR00715        69 LVDATHPFAAQITTNATAVCKELGIPYVRFERPPLALGKNIIEVPDIEEATRVAYQPYLRGKRVFL----TAGASWLSHF  144 (256)
T ss_pred             EEEcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCCCCCCCeEEeCCHHHHHHHhhhccccCCcEEE----ecCcchHHHH
Confidence            9999999764   55667889999998832 1221      1 1122333334443   2335665    7888777666


Q ss_pred             HH
Q 022057          176 AI  177 (303)
Q Consensus       176 a~  177 (303)
                      ..
T Consensus       145 ~~  146 (256)
T TIGR00715       145 SL  146 (256)
T ss_pred             hh
Confidence            53

This enzyme was found to be a monomer by gel filtration.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=97.20  E-value=0.0025  Score=64.32  Aligned_cols=119  Identities=14%  Similarity=0.090  Sum_probs=69.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhh--------hcCC----CCCC-eeecCCHHHHHhc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMV--------CDME----QPLE-IPVMSDLTMVLGS  100 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~~--------~g~~----~~~g-v~v~~dl~~~l~~  100 (303)
                      .+||+|+|+ |.||+.++..+.. .++++. ++|++... ....+.        ..+.    ...+ +.+.+|+++++  
T Consensus         4 i~kIavIG~-G~MG~~iA~~la~-~G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~--   78 (495)
T PRK07531          4 IMKAACIGG-GVIGGGWAARFLL-AGIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAV--   78 (495)
T ss_pred             cCEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHh--
Confidence            468999998 9999999998874 578775 57754210 011000        0000    0112 56678888887  


Q ss_pred             cccCCCccEEEEcCCchh-HHHH----HHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057          101 ISQSKARAVVIDFTDAST-VYDN----VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       101 ~~~~~~~DVvIDfT~p~a-~~~~----~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                          .++|+||...++.. +...    +...+..+.-+.+.|.|++..+   |.+.+.+.+.-++..||-
T Consensus        79 ----~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~---l~~~~~~~~r~~~~hP~n  141 (495)
T PRK07531         79 ----AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSD---LQEGMTHPERLFVAHPYN  141 (495)
T ss_pred             ----cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCcceEEEEecCC
Confidence                47999998776553 2222    2233333443445555887654   445555555566666654

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.16  E-value=0.0033  Score=56.25  Aligned_cols=115  Identities=17%  Similarity=0.268  Sum_probs=72.1

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----cCCHHHHHhccccCCCccEEEEc
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |+|+|++|++|+.+++.+.+ +++++.+.+.... ...+..+-    ..|+.+    ++|.+.+.+.+   .++|+|+-.
T Consensus         1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~-~~~~~~l~----~~g~~vv~~d~~~~~~l~~al---~g~d~v~~~   71 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPS-SDRAQQLQ----ALGAEVVEADYDDPESLVAAL---KGVDAVFSV   71 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSH-HHHHHHHH----HTTTEEEES-TT-HHHHHHHH---TTCSEEEEE
T ss_pred             CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccc-hhhhhhhh----cccceEeecccCCHHHHHHHH---cCCceEEee
Confidence            78999999999999999997 8899998875431 11112221    223322    33444433221   589999877


Q ss_pred             CC------chhHHHHHHHHHHcCCCeEEeCC-C--C------C-H----HHHHHHHHHhhhcCCeEEE
Q 022057          114 TD------ASTVYDNVKQATAFGMRSVVYVP-H--I------Q-L----ETVSALSAFCDKASMGCLI  161 (303)
Q Consensus       114 T~------p~a~~~~~~~al~~g~~vVigTT-G--~------~-~----e~~~~L~~~a~~~~i~vv~  161 (303)
                      +.      .+.....++.|.+.|+..++=++ +  .      . .    ++...++++.++.+++..+
T Consensus        72 ~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~t~  139 (233)
T PF05368_consen   72 TPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPYTI  139 (233)
T ss_dssp             SSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEBEE
T ss_pred             cCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhcccccee
Confidence            76      23557788999999988887432 1  1      1 1    1234678888887776553

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.16  E-value=0.0085  Score=56.49  Aligned_cols=102  Identities=17%  Similarity=0.130  Sum_probs=60.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCe--eecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ..||+|+|+ |.||..++..+.+..- .++ -++|++.  .......    +.|+  .+..++++.+      .++|+||
T Consensus         6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V-~~~dr~~--~~~~~a~----~~g~~~~~~~~~~~~~------~~aDvVi   71 (307)
T PRK07502          6 FDRVALIGI-GLIGSSLARAIRRLGLAGEI-VGADRSA--ETRARAR----ELGLGDRVTTSAAEAV------KGADLVI   71 (307)
T ss_pred             CcEEEEEee-CHHHHHHHHHHHhcCCCcEE-EEEECCH--HHHHHHH----hCCCCceecCCHHHHh------cCCCEEE
Confidence            468999997 9999999998875432 244 4667642  1111111    2232  3456677776      4799999


Q ss_pred             EcCCchhHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHH
Q 022057          112 DFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAF  151 (303)
Q Consensus       112 DfT~p~a~~~~~~~al---~~g~~vVigTTG~~~e~~~~L~~~  151 (303)
                      .++++....+.+....   +.+. +|+-.++.+.+..+.+.+.
T Consensus        72 iavp~~~~~~v~~~l~~~l~~~~-iv~dvgs~k~~~~~~~~~~  113 (307)
T PRK07502         72 LCVPVGASGAVAAEIAPHLKPGA-IVTDVGSVKASVIAAMAPH  113 (307)
T ss_pred             ECCCHHHHHHHHHHHHhhCCCCC-EEEeCccchHHHHHHHHHh
Confidence            9998877666555443   2333 4544444544444444443

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.13  E-value=0.0012  Score=55.42  Aligned_cols=110  Identities=17%  Similarity=0.091  Sum_probs=64.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe----eecCCHHHHHhccccCCCccEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI----PVMSDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv----~v~~dl~~~l~~~~~~~~~DVv  110 (303)
                      ..||+|+|+ |.||+.+++.+.+.. .+-+.++|++.  ....+++.   .++.    ..+.+.++++      .++|+|
T Consensus        19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~Dvv   85 (155)
T cd01065          19 GKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTL--EKAKALAE---RFGELGIAIAYLDLEELL------AEADLI   85 (155)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCH--HHHHHHHH---HHhhcccceeecchhhcc------ccCCEE
Confidence            468999998 999999999988653 44455667642  12222221   1121    1245666665      479999


Q ss_pred             EEcCCchhH----HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057          111 IDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus       111 IDfT~p~a~----~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      |..+++..+    .......++.+.-++--.+- ... . .+.+.+++.|+.++
T Consensus        86 i~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~-~~~-~-~l~~~~~~~g~~~v  136 (155)
T cd01065          86 INTTPVGMKPGDELPLPPSLLKPGGVVYDVVYN-PLE-T-PLLKEARALGAKTI  136 (155)
T ss_pred             EeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcC-CCC-C-HHHHHHHHCCCcee
Confidence            998877654    11223445666655433221 111 1 67777888777655

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=97.12  E-value=0.0015  Score=64.46  Aligned_cols=133  Identities=20%  Similarity=0.178  Sum_probs=77.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhhh--cCC----CCCCeeec--C
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMVC--DME----QPLEIPVM--S   92 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~~~~~--g~~----~~~gv~v~--~   92 (303)
                      |+||+|+|+ ||+||.+.+.+.+.++++++++-|+..              .|+-.+++.  .-.    ....+.++  .
T Consensus        85 ~~kvgInGF-GRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~  163 (421)
T PLN02272         85 KTKIGINGF-GRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR  163 (421)
T ss_pred             ceEEEEECc-CHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence            479999998 999999999987678999999877321              011001110  000    00112232  2


Q ss_pred             CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCC-CeEEeCC---------CCCHHHHHHHHHHhhhcCCeEEEc
Q 022057           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP---------HIQLETVSALSAFCDKASMGCLIA  162 (303)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~-~vVigTT---------G~~~e~~~~L~~~a~~~~i~vv~a  162 (303)
                      +++++-=   .+.++|+|+++|-.....+.+...++.|. .|||-.+         |.+.++   +.   .+  -.++  
T Consensus       164 dp~~~~w---~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~---l~---~~--~~II--  230 (421)
T PLN02272        164 DPAEIPW---GDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKT---YK---PN--MNIV--  230 (421)
T ss_pred             CcccCcc---cccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHH---hC---CC--CCee--
Confidence            4443321   01268999998888888888888888885 5555544         233332   21   12  2444  


Q ss_pred             CCCcHHHHHHHHHHHHhcc
Q 022057          163 PTLSIGSILLQQAAISASF  181 (303)
Q Consensus       163 ~N~SiGv~ll~~~a~~~~~  181 (303)
                      +|=|=-.|-|.-+++.+.+
T Consensus       231 SnaSCTTn~Lap~lk~L~~  249 (421)
T PLN02272        231 SNASCTTNCLAPLAKVVHE  249 (421)
T ss_pred             eCCCcHHHHHHHHHHHHHH
Confidence            5555555656556666543

>PLN02712 arogenate dehydrogenase

Probab=97.10  E-value=0.0069  Score=63.46  Aligned_cols=102  Identities=14%  Similarity=0.131  Sum_probs=66.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ++||+|+|+ |+||+.+++.+.+. +++|++ +|++.   . ...+   ...|+..+.++++++.     ..+|+||-++
T Consensus        52 ~~kIgIIG~-G~mG~slA~~L~~~-G~~V~~-~dr~~---~-~~~A---~~~Gv~~~~d~~e~~~-----~~aDvViLav  116 (667)
T PLN02712         52 QLKIAIIGF-GNYGQFLAKTLISQ-GHTVLA-HSRSD---H-SLAA---RSLGVSFFLDPHDLCE-----RHPDVILLCT  116 (667)
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHHC-CCEEEE-EeCCH---H-HHHH---HHcCCEEeCCHHHHhh-----cCCCEEEEcC
Confidence            589999997 99999999998754 688766 56532   1 1112   2456777788888663     3689999999


Q ss_pred             CchhHHHHHHHHH-Hc-C-CCeEEeCCCCCHHHHHHHHHH
Q 022057          115 DASTVYDNVKQAT-AF-G-MRSVVYVPHIQLETVSALSAF  151 (303)
Q Consensus       115 ~p~a~~~~~~~al-~~-g-~~vVigTTG~~~e~~~~L~~~  151 (303)
                      ++....+.+.... .. + -.+|+-++.....-.+.+.+.
T Consensus       117 P~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~  156 (667)
T PLN02712        117 SIISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDY  156 (667)
T ss_pred             CHHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHh
Confidence            9888777776543 21 2 235555544433223344444

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.05  E-value=0.0092  Score=59.42  Aligned_cols=104  Identities=17%  Similarity=0.197  Sum_probs=66.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |||+|+|++|.||+.+++.+.+ .+.++.+ ++++.  ....+++   ...|+....++++.+      .++|+||-+++
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~-~G~~V~v-~~r~~--~~~~~~a---~~~gv~~~~~~~e~~------~~aDvVIlavp   67 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKE-KGFEVIV-TGRDP--KKGKEVA---KELGVEYANDNIDAA------KDADIVIISVP   67 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHH-CCCEEEE-EECCh--HHHHHHH---HHcCCeeccCHHHHh------ccCCEEEEecC
Confidence            5899998559999999998875 5667654 55532  1112222   245666677888877      47899998888


Q ss_pred             chhHHHHHHHHHHc-C-CCeEEeCCCCCHHHHHHHHHHh
Q 022057          116 ASTVYDNVKQATAF-G-MRSVVYVPHIQLETVSALSAFC  152 (303)
Q Consensus       116 p~a~~~~~~~al~~-g-~~vVigTTG~~~e~~~~L~~~a  152 (303)
                      ++...+.+...... . -.+|+-.+.......+.+.+..
T Consensus        68 ~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~  106 (437)
T PRK08655         68 INVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYA  106 (437)
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhc
Confidence            88777777665542 1 2255544443344445566554

>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.02  E-value=0.0026  Score=59.49  Aligned_cols=111  Identities=16%  Similarity=0.221  Sum_probs=80.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE---EE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---vI  111 (303)
                      .+|.|+|.  |.|+..+.++... |++||+|++....  +...+++   ..+|||.|.+.|++-+      ++|+   ||
T Consensus         5 ksVvV~Gt--rFGq~Ylaaf~~~~~~~eLaGiLaqGS--eRSRaLA---h~~GVply~~~eelpd------~idiACVvV   71 (361)
T COG4693           5 KSVVVCGT--RFGQFYLAAFAAAPPRFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPD------DIDIACVVV   71 (361)
T ss_pred             ceEEEecc--hHHHHHHHHhccCCCCceeehhhhccc--HHHHHHH---HHhCCccccCHhhCCC------CCCeEEEEE
Confidence            38999996  9999999988876 8999999987532  2334455   4789999999999864      5553   33


Q ss_pred             EcC-CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057          112 DFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus       112 DfT-~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      -.| .-..--+..+..++.|++|+.+-+=. ++++.++.++|++.|....
T Consensus        72 rsai~Gg~Gs~larall~RGi~VlqEHPl~-p~di~~l~rlA~rqG~~y~  120 (361)
T COG4693          72 RSAIVGGQGSALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYL  120 (361)
T ss_pred             eeeeecCCcHHHHHHHHHcccHHHHhCCCC-HHHHHHHHHHHHHhCcEEE
Confidence            333 23444778888899999999886644 4567777777777665533

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.01  E-value=0.019  Score=48.96  Aligned_cols=85  Identities=22%  Similarity=0.311  Sum_probs=52.5

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----cCCHHHHHhccccCCCccEEEEc
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |.|.|+||.+|+.+++.+.+. ++++.+.+.+..   ...+      ..++.+    ..|.+.+.+.+   .++|+||++
T Consensus         1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~---~~~~------~~~~~~~~~d~~d~~~~~~al---~~~d~vi~~   67 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPS---KAED------SPGVEIIQGDLFDPDSVKAAL---KGADAVIHA   67 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGG---GHHH------CTTEEEEESCTTCHHHHHHHH---TTSSEEEEC
T ss_pred             eEEECCCChHHHHHHHHHHHC-CCEEEEEecCch---hccc------ccccccceeeehhhhhhhhhh---hhcchhhhh
Confidence            789999999999999999865 499999875431   1111      112221    23443332221   479999987


Q ss_pred             CC-----chhHHHHHHHHHHcCCCeEE
Q 022057          114 TD-----ASTVYDNVKQATAFGMRSVV  135 (303)
Q Consensus       114 T~-----p~a~~~~~~~al~~g~~vVi  135 (303)
                      ..     .+.....+..+.++|++-++
T Consensus        68 ~~~~~~~~~~~~~~~~a~~~~~~~~~v   94 (183)
T PF13460_consen   68 AGPPPKDVDAAKNIIEAAKKAGVKRVV   94 (183)
T ss_dssp             CHSTTTHHHHHHHHHHHHHHTTSSEEE
T ss_pred             hhhhcccccccccccccccccccccce
Confidence            64     23345555666677765443

...

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=96.99  E-value=0.012  Score=59.50  Aligned_cols=117  Identities=10%  Similarity=0.100  Sum_probs=69.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe---eecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv---~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      +.+|+++|. |.||+.++..+.+ .+++|+ ++|++.  .....+.......|.   ..+.+++++.+++   ..+|+||
T Consensus         6 ~~~IG~IGL-G~MG~~mA~nL~~-~G~~V~-V~NRt~--~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l---~~~dvIi   77 (493)
T PLN02350          6 LSRIGLAGL-AVMGQNLALNIAE-KGFPIS-VYNRTT--SKVDETVERAKKEGNLPLYGFKDPEDFVLSI---QKPRSVI   77 (493)
T ss_pred             CCCEEEEee-HHHHHHHHHHHHh-CCCeEE-EECCCH--HHHHHHHHhhhhcCCcccccCCCHHHHHhcC---CCCCEEE
Confidence            568999997 9999999999984 688776 678642  222223210001132   2567888887531   3589888


Q ss_pred             Ec-CCchhHHHHH---HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057          112 DF-TDASTVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus       112 Df-T~p~a~~~~~---~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      -+ +.++++.+.+   ...++.|. +||-++..+.++..++.+.+++.|+..+
T Consensus        78 ~~v~~~~aV~~Vi~gl~~~l~~G~-iiID~sT~~~~~t~~~~~~l~~~Gi~fl  129 (493)
T PLN02350         78 ILVKAGAPVDQTIKALSEYMEPGD-CIIDGGNEWYENTERRIKEAAEKGLLYL  129 (493)
T ss_pred             EECCCcHHHHHHHHHHHhhcCCCC-EEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            54 3444555543   33444554 4444443444556667777777676644

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.99  E-value=0.007  Score=56.39  Aligned_cols=98  Identities=18%  Similarity=0.140  Sum_probs=58.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-ee-ecCCHHHHHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IP-VMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g-v~-v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |||+|+|+ |.||..++..+.+ .++++. ++|++.  .......    ..+ +. ..++.+ .+      .++|+||.+
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~-~g~~V~-~~d~~~--~~~~~a~----~~g~~~~~~~~~~-~~------~~aDlVila   64 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRS-LGHTVY-GVSRRE--STCERAI----ERGLVDEASTDLS-LL------KDCDLVILA   64 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH----HCCCcccccCCHh-Hh------cCCCEEEEc
Confidence            48999997 9999999998875 467765 466542  1112221    112 11 233443 44      479999999


Q ss_pred             CCchhHHHHHHHHHHc-C-CCeEEeCCCCCHHHHHHHH
Q 022057          114 TDASTVYDNVKQATAF-G-MRSVVYVPHIQLETVSALS  149 (303)
Q Consensus       114 T~p~a~~~~~~~al~~-g-~~vVigTTG~~~e~~~~L~  149 (303)
                      +++....+.+...... + ..+|+-+++...+..+.+.
T Consensus        65 vp~~~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~  102 (279)
T PRK07417         65 LPIGLLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWE  102 (279)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHH
Confidence            8888887777655543 2 2344444455554444443

>PRK08223 hypothetical protein; Validated

Probab=96.97  E-value=0.0068  Score=57.18  Aligned_cols=96  Identities=20%  Similarity=0.239  Sum_probs=55.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCeeec--
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIPVM--   91 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~~~-----~~g~~~~~gv~v~--   91 (303)
                      .-||.|+|| |.+|..+++.+. ..++.=..++|.+.                .|+.-.+     +..+.....+.++  
T Consensus        27 ~s~VlIvG~-GGLGs~va~~LA-~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~  104 (287)
T PRK08223         27 NSRVAIAGL-GGVGGIHLLTLA-RLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE  104 (287)
T ss_pred             cCCEEEECC-CHHHHHHHHHHH-HhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            368999999 999999999887 45766667777421                1111000     1111111222221  


Q ss_pred             ----CCHHHHHhccccCCCccEEEEcCCc---hhHHHHHHHHHHcCCCeEEeCC
Q 022057           92 ----SDLTMVLGSISQSKARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVvIDfT~p---~a~~~~~~~al~~g~~vVigTT  138 (303)
                          ++.++++      .++|+|||.+..   +.-+..-..|.++|+|+|.+.+
T Consensus       105 ~l~~~n~~~ll------~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~  152 (287)
T PRK08223        105 GIGKENADAFL------DGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAP  152 (287)
T ss_pred             ccCccCHHHHH------hCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEec
Confidence                2344555      367777777643   4445555677777777777644

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.95  E-value=0.0016  Score=57.58  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=30.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      |||+|+|++|+.|+.+++.+. ..++|+++++..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~-~RGHeVTAivRn   33 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEAL-KRGHEVTAIVRN   33 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHH-hCCCeeEEEEeC
Confidence            699999999999999999877 679999999864

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.94  E-value=0.0083  Score=59.00  Aligned_cols=125  Identities=14%  Similarity=0.141  Sum_probs=69.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cC--------C------CCCC-eeecCCHHHHHh
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DM--------E------QPLE-IPVMSDLTMVLG   99 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~--------~------~~~g-v~v~~dl~~~l~   99 (303)
                      |||+|+|+ |.||..++..+. ..++++++ +|++.  .....+. |.        .      ...+ +..++++++++ 
T Consensus         1 mkI~vIGl-G~~G~~lA~~La-~~G~~V~~-~d~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~-   74 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLA-DLGHEVTG-VDIDQ--EKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAI-   74 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHH-hcCCeEEE-EECCH--HHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHH-
Confidence            48999997 999999999887 46788765 66531  1111111 00        0      0123 55667888877 


Q ss_pred             ccccCCCccEEEEcCC-ch---------hHHHHHHH---HHHcCCCeEEeCC---CCCHHHHHHHHHH-h--h-hcCCeE
Q 022057          100 SISQSKARAVVIDFTD-AS---------TVYDNVKQ---ATAFGMRSVVYVP---HIQLETVSALSAF-C--D-KASMGC  159 (303)
Q Consensus       100 ~~~~~~~~DVvIDfT~-p~---------a~~~~~~~---al~~g~~vVigTT---G~~~e~~~~L~~~-a--~-~~~i~v  159 (303)
                           .++|++|-+.+ |.         .+.+.+..   .++.|.-+|..+|   |.+++-...+.+. .  . ....++
T Consensus        75 -----~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v  149 (411)
T TIGR03026        75 -----RDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL  149 (411)
T ss_pred             -----hhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence                 47999887653 32         13333332   3344555555444   3444332233221 1  0 113588


Q ss_pred             EEcCCCcHHHHH
Q 022057          160 LIAPTLSIGSIL  171 (303)
Q Consensus       160 v~a~N~SiGv~l  171 (303)
                      ..+|.|..-..+
T Consensus       150 ~~~Pe~~~~G~~  161 (411)
T TIGR03026       150 AYNPEFLREGNA  161 (411)
T ss_pred             EECCCcCCCCCh
Confidence            999988665443

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.87  E-value=0.0074  Score=57.61  Aligned_cols=113  Identities=12%  Similarity=0.132  Sum_probs=68.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .||+|+|+ |+||+.+++.+.. .+++++...++..  .....+.    +.|+.+. +.++++      .++|+|+-..+
T Consensus         4 kkIgiIG~-G~mG~AiA~~L~~-sG~~Viv~~~~~~--~~~~~a~----~~Gv~~~-s~~ea~------~~ADiVvLaVp   68 (314)
T TIGR00465         4 KTVAIIGY-GSQGHAQALNLRD-SGLNVIVGLRKGG--ASWKKAT----EDGFKVG-TVEEAI------PQADLIMNLLP   68 (314)
T ss_pred             CEEEEEeE-cHHHHHHHHHHHH-CCCeEEEEECcCh--hhHHHHH----HCCCEEC-CHHHHH------hcCCEEEEeCC
Confidence            57999998 9999999999874 5677655454421  1222111    3455554 467776      47999998888


Q ss_pred             chhHHHHHHH-H---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE-EcCCCcHH
Q 022057          116 ASTVYDNVKQ-A---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIG  168 (303)
Q Consensus       116 p~a~~~~~~~-a---l~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv-~a~N~SiG  168 (303)
                      |+...+.+.. .   ++.+ .+|+=..|++-+..+   ..-.+ +++++ +.||..--
T Consensus        69 p~~~~~~v~~ei~~~l~~g-~iVs~aaG~~i~~~~---~~~~~-~~~VvrvmPn~p~~  121 (314)
T TIGR00465        69 DEVQHEVYEAEIQPLLKEG-KTLGFSHGFNIHFVQ---IVPPK-DVDVVMVAPKGPGT  121 (314)
T ss_pred             cHhHHHHHHHHHHhhCCCC-cEEEEeCCccHhhcc---ccCCC-CCcEEEECCCCCcH
Confidence            8834333222 2   3334 366556698865532   22221 24444 77887754

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PLN02522 ATP citrate (pro-S)-lyase

Probab=96.84  E-value=0.0071  Score=62.46  Aligned_cols=81  Identities=16%  Similarity=0.284  Sum_probs=62.7

Q ss_pred             CCCCeeecCCHHHHHhccccCCCccEEEEcCCchhHHH-HHHHHHHcCCCeEEe-CCCCCHHHHHHHHHHhhhcCCeEEE
Q 022057           84 QPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYD-NVKQATAFGMRSVVY-VPHIQLETVSALSAFCDKASMGCLI  161 (303)
Q Consensus        84 ~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~-~~~~al~~g~~vVig-TTG~~~e~~~~L~~~a~~~~i~vv~  161 (303)
                      +..++|||++.+|+.++   ..++|+.|.|-+|..+.+ .++.|.+.|++.++- |.|+.+.+..+|.++++++|+. ++
T Consensus        59 ~~~~iPVf~tv~eA~~~---~~~~~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~r-lI  134 (608)
T PLN02522         59 EEIAIPVHGSIEAACKA---HPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKV-VI  134 (608)
T ss_pred             EeeCccccchHHHHHHh---CCCCcEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCE-EE
Confidence            35689999999999974   236899999998877755 455555679876655 4599887788999999999987 77


Q ss_pred             cCCCcHHH
Q 022057          162 APTLSIGS  169 (303)
Q Consensus       162 a~N~SiGv  169 (303)
                      .|| ++|+
T Consensus       135 GPN-c~Gi  141 (608)
T PLN02522        135 GPA-TVGG  141 (608)
T ss_pred             CCC-CCee
Confidence            888 5555

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.81  E-value=0.0032  Score=55.48  Aligned_cols=123  Identities=12%  Similarity=0.142  Sum_probs=65.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhhhcCC-CCCCeeecCCHHHHHhcc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMVCDME-QPLEIPVMSDLTMVLGSI  101 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~~~~~g~~-~~~gv~v~~dl~~~l~~~  101 (303)
                      |||+|+|. |.+|-..+-.++ +.+++++| +|.+.             ......++.... .......++|.++.+.  
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA-~~G~~V~g-~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~--   75 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALA-EKGHQVIG-VDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK--   75 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHH-HTTSEEEE-E-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--
T ss_pred             CEEEEECC-CcchHHHHHHHH-hCCCEEEE-EeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh--
Confidence            79999997 999999998776 57899887 55321             011112221100 1234566778888763  


Q ss_pred             ccCCCccEEEEcC-Cc------------hhHHHHHHHHHHcCCCeEEeCC---CCCHHHHHHHHHHhhh--cCCeEEEcC
Q 022057          102 SQSKARAVVIDFT-DA------------STVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAFCDK--ASMGCLIAP  163 (303)
Q Consensus       102 ~~~~~~DVvIDfT-~p------------~a~~~~~~~al~~g~~vVigTT---G~~~e~~~~L~~~a~~--~~i~vv~a~  163 (303)
                          ++|+++-+- +|            +.+.+.+...++.+.-+|+.+|   |.+++....+.+....  .+..+.++|
T Consensus        76 ----~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~P  151 (185)
T PF03721_consen   76 ----DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSP  151 (185)
T ss_dssp             ----H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE--
T ss_pred             ----ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECC
Confidence                688877543 22            3334455555666777888877   7777554444333221  235677777


Q ss_pred             CCcH
Q 022057          164 TLSI  167 (303)
Q Consensus       164 N~Si  167 (303)
                      =|-.
T Consensus       152 Erl~  155 (185)
T PF03721_consen  152 ERLR  155 (185)
T ss_dssp             ----
T ss_pred             CccC
Confidence            6644

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.81  E-value=0.015  Score=53.86  Aligned_cols=90  Identities=10%  Similarity=0.056  Sum_probs=55.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCee-ecCCHHHHHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |||+|+|+ |.||+.++..+.+..- .++. ++|++.  .......    ..|+. ...+++++.       ++|+||-+
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~-~~d~~~--~~~~~~~----~~g~~~~~~~~~~~~-------~aD~Vila   65 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVY-GYDHNE--LHLKKAL----ELGLVDEIVSFEELK-------KCDVIFLA   65 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEE-EEcCCH--HHHHHHH----HCCCCcccCCHHHHh-------cCCEEEEe
Confidence            48999997 9999999999875421 3444 466542  1111111    23332 234666653       48999999


Q ss_pred             CCchhHHHHHHHHHH--cCCCeEEeCCCCCH
Q 022057          114 TDASTVYDNVKQATA--FGMRSVVYVPHIQL  142 (303)
Q Consensus       114 T~p~a~~~~~~~al~--~g~~vVigTTG~~~  142 (303)
                      ++|+...+.+.....  .+. +|+- .|.+.
T Consensus        66 vp~~~~~~~~~~l~~l~~~~-iv~d-~gs~k   94 (275)
T PRK08507         66 IPVDAIIEILPKLLDIKENT-TIID-LGSTK   94 (275)
T ss_pred             CcHHHHHHHHHHHhccCCCC-EEEE-Cccch
Confidence            999888887776543  232 5554 44443

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.79  E-value=0.0027  Score=60.68  Aligned_cols=91  Identities=12%  Similarity=0.104  Sum_probs=63.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCC--eeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      -+++|+|+ |.+|+.++..+....+++.+.+++++.  ..+.+++.. ...++  +..++|+++++      .++|+||-
T Consensus       128 ~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~------~~aDiVi~  198 (325)
T PRK08618        128 KTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTF--EKAYAFAQEIQSKFNTEIYVVNSADEAI------EEADIIVT  198 (325)
T ss_pred             cEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCH--HHHHHHHHHHHHhcCCcEEEeCCHHHHH------hcCCEEEE
Confidence            57999998 999999999887777899999998753  222222210 01223  44578999988      47999997


Q ss_pred             cCCchhHHHHHHHHHHcCCCeE-EeC
Q 022057          113 FTDASTVYDNVKQATAFGMRSV-VYV  137 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vV-igT  137 (303)
                      +|+ ..+.-.- .+++.|++|. +|+
T Consensus       199 aT~-s~~p~i~-~~l~~G~hV~~iGs  222 (325)
T PRK08618        199 VTN-AKTPVFS-EKLKKGVHINAVGS  222 (325)
T ss_pred             ccC-CCCcchH-HhcCCCcEEEecCC
Confidence            763 3344344 7889999985 454

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=96.74  E-value=0.017  Score=54.54  Aligned_cols=113  Identities=20%  Similarity=0.193  Sum_probs=76.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC-
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT-  114 (303)
                      +||+.+|. |.||.-+++.+.+ .++++. ++|++.  ..+.+++   ...|.....+..++.      ..+|+||-+= 
T Consensus         1 ~kIafIGL-G~MG~pmA~~L~~-aG~~v~-v~~r~~--~ka~~~~---~~~Ga~~a~s~~eaa------~~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIGL-GIMGSPMAANLLK-AGHEVT-VYNRTP--EKAAELL---AAAGATVAASPAEAA------AEADVVITMLP   66 (286)
T ss_pred             CeEEEEcC-chhhHHHHHHHHH-CCCEEE-EEeCCh--hhhhHHH---HHcCCcccCCHHHHH------HhCCEEEEecC
Confidence            48999996 9999999999884 677766 577642  1112222   245777788887777      4799998754 


Q ss_pred             CchhHHHHHH---HHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057          115 DASTVYDNVK---QATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus       115 ~p~a~~~~~~---~al~---~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                      .++.+.+.+.   -.++   .|.-+|- .+..+++..+++.+..++.|...+=+|
T Consensus        67 ~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~~~G~~~lDAP  120 (286)
T COG2084          67 DDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALAAKGLEFLDAP  120 (286)
T ss_pred             CHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHhcCCcEEecC
Confidence            4445555553   2333   3555554 445667788899999999988877555

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.74  E-value=0.013  Score=55.23  Aligned_cols=112  Identities=14%  Similarity=0.177  Sum_probs=65.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-------cCCHHHHHhccccCCCcc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARA  108 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~D  108 (303)
                      |||.|.|++|.+|+.+++.+.+ .++++.++.....   ....+.    ..++.+       ..++.+++      .++|
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~-~g~~V~~l~R~~~---~~~~l~----~~~v~~v~~Dl~d~~~l~~al------~g~d   66 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALD-EGYQVRCLVRNLR---KASFLK----EWGAELVYGDLSLPETLPPSF------KGVT   66 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCeEEEEEcChH---HhhhHh----hcCCEEEECCCCCHHHHHHHH------CCCC
Confidence            4899999999999999999885 5789887764321   111111    112222       12344555      4789


Q ss_pred             EEEEcCCch-------------hHHHHHHHHHHcCCC-eEE-eCCC-----CCH--HHHHHHHHHhhhcCCeEEE
Q 022057          109 VVIDFTDAS-------------TVYDNVKQATAFGMR-SVV-YVPH-----IQL--ETVSALSAFCDKASMGCLI  161 (303)
Q Consensus       109 VvIDfT~p~-------------a~~~~~~~al~~g~~-vVi-gTTG-----~~~--e~~~~L~~~a~~~~i~vv~  161 (303)
                      +||.+....             .....++.|.++|+. +|. ++.|     .++  +...+.+++.++.++++.+
T Consensus        67 ~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~~~~~~~~~~K~~~e~~l~~~~l~~ti  141 (317)
T CHL00194         67 AIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQYPYIPLMKLKSDIEQKLKKSGIPYTI  141 (317)
T ss_pred             EEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccccCCChHHHHHHHHHHHHHHcCCCeEE
Confidence            999875321             224556777788864 443 3322     111  1233456666777776543

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.71  E-value=0.01  Score=54.53  Aligned_cols=33  Identities=24%  Similarity=0.272  Sum_probs=27.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ..||.|+|+ |.+|..+++.+.. .++.=..++|.
T Consensus        24 ~~~VlvvG~-GglGs~va~~La~-~Gvg~i~lvD~   56 (240)
T TIGR02355        24 ASRVLIVGL-GGLGCAASQYLAA-AGVGNLTLLDF   56 (240)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHH-cCCCEEEEEeC
Confidence            468999998 9999999998874 57666667775

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.71  E-value=0.0091  Score=57.56  Aligned_cols=95  Identities=20%  Similarity=0.216  Sum_probs=56.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC-----Cc-------chh-----------hhhcCCCCCCeeec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----GE-------DIG-----------MVCDMEQPLEIPVM   91 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-----g~-------d~~-----------~~~g~~~~~gv~v~   91 (303)
                      ..||.|+|+ |.+|..+++.+. ..++.-+.++|.+..     .+       |++           .+..+.....+..+
T Consensus        24 ~~~VlIiG~-GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~  101 (338)
T PRK12475         24 EKHVLIVGA-GALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV  101 (338)
T ss_pred             CCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence            468999998 999999999887 467766667885321     11       110           00001011122111


Q ss_pred             ------CCHHHHHhccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeC
Q 022057           92 ------SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV  137 (303)
Q Consensus        92 ------~dl~~~l~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigT  137 (303)
                            .++++++      .++|+|||.+..... .-.-..|.++|+|+|.+.
T Consensus       102 ~~~~~~~~~~~~~------~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~  148 (338)
T PRK12475        102 VTDVTVEELEELV------KEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGG  148 (338)
T ss_pred             eccCCHHHHHHHh------cCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence                  2344555      468888888854444 334467788888888764

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.70  E-value=0.0055  Score=57.72  Aligned_cols=99  Identities=14%  Similarity=0.155  Sum_probs=56.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh-------hcCCCC--------CCeeecCCHHHHHh
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV-------CDMEQP--------LEIPVMSDLTMVLG   99 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~-------~g~~~~--------~gv~v~~dl~~~l~   99 (303)
                      +.||+|+|+ |.||..++..+.. .+++++. +|++.  .....+       .+...+        ..+..++|+++++ 
T Consensus         4 ~~~I~vIGa-G~mG~~iA~~l~~-~g~~V~~-~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-   77 (311)
T PRK06130          4 IQNLAIIGA-GTMGSGIAALFAR-KGLQVVL-IDVME--GALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAV-   77 (311)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHh-CCCeEEE-EECCH--HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHh-
Confidence            568999998 9999999998874 5777765 66432  111110       010000        0134566787776 


Q ss_pred             ccccCCCccEEEEcCCchh--HHHHHHHH---HHcCCCeEEeCCCCCHHH
Q 022057          100 SISQSKARAVVIDFTDAST--VYDNVKQA---TAFGMRSVVYVPHIQLET  144 (303)
Q Consensus       100 ~~~~~~~~DVvIDfT~p~a--~~~~~~~a---l~~g~~vVigTTG~~~e~  144 (303)
                           .++|+||.+..++.  ..+.+...   +..+.-+++-|.|.+.++
T Consensus        78 -----~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~  122 (311)
T PRK06130         78 -----SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITA  122 (311)
T ss_pred             -----ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHH
Confidence                 47999998886653  23333322   223333334555776543

>PLN02858 fructose-bisphosphate aldolase

Probab=96.70  E-value=0.021  Score=64.42  Aligned_cols=114  Identities=13%  Similarity=0.046  Sum_probs=75.7

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      ++.||+++|. |.||..+++.+.. .++++. ++|++.  .....+.    ..|.....++.++.+      ++|+||-+
T Consensus       323 ~~~~IGfIGl-G~MG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~~~------~aDvVi~~  387 (1378)
T PLN02858        323 PVKRIGFIGL-GAMGFGMASHLLK-SNFSVC-GYDVYK--PTLVRFE----NAGGLAGNSPAEVAK------DVDVLVIM  387 (1378)
T ss_pred             CCCeEEEECc-hHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEe
Confidence            4678999997 9999999999874 578775 567642  2223333    235555678888874      78998865


Q ss_pred             CC-chhHHHHHH------HHHHcCCCeEEeCCCCCHHHHHHHHHHhhh--cCCeEEEcC
Q 022057          114 TD-ASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDK--ASMGCLIAP  163 (303)
Q Consensus       114 T~-p~a~~~~~~------~al~~g~~vVigTTG~~~e~~~~L~~~a~~--~~i~vv~a~  163 (303)
                      -. |+.+.+.+.      ..++.|. +|+-.+..+++..+++.+.+++  .|+..+=+|
T Consensus       388 V~~~~~v~~Vl~g~~g~~~~l~~g~-ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAP  445 (1378)
T PLN02858        388 VANEVQAENVLFGDLGAVSALPAGA-SIVLSSTVSPGFVIQLERRLENEGRDIKLVDAP  445 (1378)
T ss_pred             cCChHHHHHHHhchhhHHhcCCCCC-EEEECCCCCHHHHHHHHHHHHhhCCCcEEEEcc
Confidence            54 666665542      1223444 5555555567777788887777  777766666

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.68  E-value=0.01  Score=51.79  Aligned_cols=31  Identities=26%  Similarity=0.373  Sum_probs=25.0

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ||+|+|+ |.||..+++.+.. .++.=+-++|.
T Consensus         1 ~VlViG~-GglGs~ia~~La~-~Gvg~i~lvD~   31 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLAR-SGVGNLKLVDF   31 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence            6899998 9999999998874 56654556774

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]

Probab=96.68  E-value=0.022  Score=52.63  Aligned_cols=130  Identities=13%  Similarity=0.160  Sum_probs=83.4

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE-ecCCCCcchhhhhcCCCCCCeee--cC---CHHHHHhccccCCCc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI-DSHSVGEDIGMVCDMEQPLEIPV--MS---DLTMVLGSISQSKAR  107 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v-d~~~~g~d~~~~~g~~~~~gv~v--~~---dl~~~l~~~~~~~~~  107 (303)
                      |+++|.|+|.| .=++.+++.+...+...++... ++   |.+..+.     ...+.+  +.   -+.+.+.+    .++
T Consensus         1 ~~~~ilvlGGT-~Dar~la~~L~~~~~~~~~ss~t~~---g~~l~~~-----~~~~~~~G~l~~e~l~~~l~e----~~i   67 (257)
T COG2099           1 SMMRILLLGGT-SDARALAKKLAAAPVDIILSSLTGY---GAKLAEQ-----IGPVRVGGFLGAEGLAAFLRE----EGI   67 (257)
T ss_pred             CCceEEEEecc-HHHHHHHHHhhccCccEEEEEcccc---cccchhc-----cCCeeecCcCCHHHHHHHHHH----cCC
Confidence            46889999985 7789999999888754444322 22   1111110     111111  12   33445543    789


Q ss_pred             cEEEEcCCchhH---HHHHHHHHHcCCCeE-EeCCCCCH--------HHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH
Q 022057          108 AVVIDFTDASTV---YDNVKQATAFGMRSV-VYVPHIQL--------ETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (303)
Q Consensus       108 DVvIDfT~p~a~---~~~~~~al~~g~~vV-igTTG~~~--------e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~  175 (303)
                      |++||.|||-+.   ...++.|-+.|+|.+ -+-|+|..        ++.+++.+++++.+-.++.    .+|.+-|..|
T Consensus        68 ~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~~~rVfl----t~G~~~l~~f  143 (257)
T COG2099          68 DLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQLGRRVFL----TTGRQNLAHF  143 (257)
T ss_pred             CEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhccCCcEEE----ecCccchHHH
Confidence            999999999766   556788999999988 34455543        4556677777776666775    7888777777


Q ss_pred             HHHhc
Q 022057          176 AISAS  180 (303)
Q Consensus       176 a~~~~  180 (303)
                      .+...
T Consensus       144 ~~~~~  148 (257)
T COG2099         144 VAADA  148 (257)
T ss_pred             hcCcc
Confidence            65443

>COG1810 Uncharacterized protein conserved in archaea [Function unknown]

Probab=96.67  E-value=0.031  Score=50.48  Aligned_cols=160  Identities=12%  Similarity=0.152  Sum_probs=104.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      ||||+|+.. |.-|...++.+... -.-+++++.+.+.   ...           ...+..++.|..+   .++|++|-+
T Consensus         1 ~mki~vlt~-g~yG~R~~~nl~~~~f~~~~v~v~~~Pe---~~~-----------~fie~P~~~Lp~~---~e~Di~va~   62 (224)
T COG1810           1 MMKILVLTD-GEYGKRAVNNLACKGFKNQFVAVKEYPE---ELP-----------DFIEEPEDLLPKL---PEADIVVAY   62 (224)
T ss_pred             CcEEEEEee-ccchHHHHHhHhhhccccceEEEEeccc---ccc-----------chhhCHHHhcCCC---CCCCEEEEe
Confidence            689999996 99999999988853 2346777776531   111           1124456677532   478999988


Q ss_pred             C-CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcH----HHHHHHHHHHHhccCCCcEEE
Q 022057          114 T-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI----GSILLQQAAISASFHYKNVEI  188 (303)
Q Consensus       114 T-~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~Si----Gv~ll~~~a~~~~~~~~dieI  188 (303)
                      + +|+-.++..+.+.+.|...||=-.+-.....++|++.+.+.|+-+..--+|--    |--.+.+|+..+.+-...+|+
T Consensus        63 ~lHPDl~~~L~e~~~~~~~~alIvp~~~~~g~rkqL~~~~~~~g~e~~~p~p~C~Le~~~~p~i~~F~e~FG~P~vevev  142 (224)
T COG1810          63 GLHPDLLLALPEKAAEGGVKALIVPAEPPEGLRKQLKEFCEELGVEFEAPEPFCSLEPNENPHIDEFAERFGKPEVEVEV  142 (224)
T ss_pred             ccCccHHHHHHHHHHhCCccEEEEecCCChhHHHHHHHHhhhcceeeecCCccccCCCCCChHHHHHHHHcCCceEEEEe
Confidence            7 89999999999988887655532222234567788888887766543333310    122478888877543323332


Q ss_pred             EEcc----CCCCCCCcHHHHHHHHHHHh
Q 022057          189 VESR----PNARDFPSPDATQIANNLSN  212 (303)
Q Consensus       189 iE~H----h~K~DaPSGTA~~l~~~i~~  212 (303)
                      -+--    +-++.||=|.+.-+|+.+.-
T Consensus       143 ~~~~i~~V~V~RsaPCGsT~~vAk~l~G  170 (224)
T COG1810         143 ENGKIKDVDVLRSAPCGSTWYVAKRLVG  170 (224)
T ss_pred             cCCeEEEEEEEecCCCchHHHHHHHhcC
Confidence            2211    23789999999999998743

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.66  E-value=0.029  Score=54.76  Aligned_cols=71  Identities=20%  Similarity=0.117  Sum_probs=51.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ..||+|+|.+|.||+.+++.+.+..+.++.+ +|+...                 ...++++.+      .++|+||-++
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g-~D~~d~-----------------~~~~~~~~v------~~aDlVilav   59 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIG-HDPADP-----------------GSLDPATLL------QRADVLIFSA   59 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCEEEE-EcCCcc-----------------ccCCHHHHh------cCCCEEEEeC
Confidence            4689999988999999999998655778775 665310                 022445555      4688888888


Q ss_pred             CchhHHHHHHHHHHc
Q 022057          115 DASTVYDNVKQATAF  129 (303)
Q Consensus       115 ~p~a~~~~~~~al~~  129 (303)
                      +++...+.+......
T Consensus        60 Pv~~~~~~l~~l~~~   74 (370)
T PRK08818         60 PIRHTAALIEEYVAL   74 (370)
T ss_pred             CHHHHHHHHHHHhhh
Confidence            888888777766653

>COG1832 Predicted CoA-binding protein [General function prediction only]

Probab=96.66  E-value=0.01  Score=49.89  Aligned_cols=102  Identities=15%  Similarity=0.135  Sum_probs=75.3

Q ss_pred             eeEEEEcCCcH---HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKE---IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~Gr---MG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      .+|+|+|+|-+   =+-.+.+.++ +.|.++.. +++..   +..++      +|-++|.|+.++-      .++|+|.-
T Consensus        17 K~IAvVG~S~~P~r~sy~V~kyL~-~~GY~ViP-VNP~~---~~~ei------LG~k~y~sL~dIp------e~IDiVdv   79 (140)
T COG1832          17 KTIAVVGASDKPDRPSYRVAKYLQ-QKGYRVIP-VNPKL---AGEEI------LGEKVYPSLADIP------EPIDIVDV   79 (140)
T ss_pred             ceEEEEecCCCCCccHHHHHHHHH-HCCCEEEe-eCccc---chHHh------cCchhhhcHHhCC------CCCcEEEE
Confidence            47899998754   4455777666 67899987 34432   22333      4568899999885      58999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCC
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i  157 (303)
                      |-.|+.+.+.++.+++.+..+|-.-.|...++.   .+.+++.|.
T Consensus        80 FR~~e~~~~i~~eal~~~~kv~W~QlGi~n~ea---~~~~~~aG~  121 (140)
T COG1832          80 FRRSEAAPEVAREALEKGAKVVWLQLGIRNEEA---AEKARDAGL  121 (140)
T ss_pred             ecChhhhHHHHHHHHhhCCCeEEEecCcCCHHH---HHHHHHhCc
Confidence            999999999999999999999998888765543   333455444

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=96.65  E-value=0.0058  Score=58.69  Aligned_cols=97  Identities=25%  Similarity=0.209  Sum_probs=60.4

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCcchhhhhcCCC------CC-Ceeec--C
Q 022057           37 KVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGEDIGMVCDMEQ------PL-EIPVM--S   92 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~~~-------------~g~d~~~~~g~~~------~~-gv~v~--~   92 (303)
                      ||+|+|+ ||+||.+.+++.+.  +++++|++-|...             .|+--+++.-...      .. .+.++  .
T Consensus         1 ~i~INGf-GRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~   79 (327)
T TIGR01534         1 KVGINGF-GRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER   79 (327)
T ss_pred             CEEEEcc-ChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence            7999998 99999999998876  5899999877310             0110000000000      01 12222  1


Q ss_pred             CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (303)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT  137 (303)
                      +++++-=   .+.++|+|+++|-.....+.+...++.|...|+=+
T Consensus        80 dp~~~~w---~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iS  121 (327)
T TIGR01534        80 DPSDLPW---KALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLIS  121 (327)
T ss_pred             CcccCch---hhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeC
Confidence            3333210   01379999999988888899999999997666544

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.62  E-value=0.012  Score=54.73  Aligned_cols=100  Identities=17%  Similarity=0.149  Sum_probs=56.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcc---------hhhhhcCC--C-------CCCeeecCCHHH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---------IGMVCDME--Q-------PLEIPVMSDLTM   96 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d---------~~~~~g~~--~-------~~gv~v~~dl~~   96 (303)
                      +.||+|+|+ |.||..++..+... +.+++. +|.+..-.+         ...+...+  .       ..++.+++|+++
T Consensus         3 ~~kI~VIG~-G~mG~~ia~~la~~-g~~V~~-~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~   79 (282)
T PRK05808          3 IQKIGVIGA-GTMGNGIAQVCAVA-GYDVVM-VDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD   79 (282)
T ss_pred             ccEEEEEcc-CHHHHHHHHHHHHC-CCceEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence            358999998 99999999988754 777775 564310000         00111000  0       013455677765


Q ss_pred             HHhccccCCCccEEEEcCCchhH--HHHHHH---HHHcCCCeEEeCCCCCHHH
Q 022057           97 VLGSISQSKARAVVIDFTDASTV--YDNVKQ---ATAFGMRSVVYVPHIQLET  144 (303)
Q Consensus        97 ~l~~~~~~~~~DVvIDfT~p~a~--~~~~~~---al~~g~~vVigTTG~~~e~  144 (303)
                       +      .++|+||.+.+++..  .+.+..   ++..+..+++-|.|++..+
T Consensus        80 -~------~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~  125 (282)
T PRK05808         80 -L------KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITE  125 (282)
T ss_pred             -h------ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence             3      479999988764322  233333   3333444444455776654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.61  E-value=0.012  Score=55.43  Aligned_cols=110  Identities=16%  Similarity=0.199  Sum_probs=64.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--cCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ..+|+|+|+ |+||+.+++.+.. -++++. +++++.  .+.....    ..+...  +.++++.+      .++|+||.
T Consensus       151 gk~v~IiG~-G~iG~avA~~L~~-~G~~V~-v~~R~~--~~~~~~~----~~g~~~~~~~~l~~~l------~~aDiVin  215 (287)
T TIGR02853       151 GSNVMVLGF-GRTGMTIARTFSA-LGARVF-VGARSS--ADLARIT----EMGLIPFPLNKLEEKV------AEIDIVIN  215 (287)
T ss_pred             CCEEEEEcC-hHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HCCCeeecHHHHHHHh------ccCCEEEE
Confidence            368999998 9999999998875 467765 566542  1211111    122221  34667776      47999997


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEE--e-CCCCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057          113 FTDASTVYDNVKQATAFGMRSVV--Y-VPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVi--g-TTG~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                      .++.....+.....++.+. +|+  + .+|-++     + ++|++.|++.+++||.-
T Consensus       216 t~P~~ii~~~~l~~~k~~a-liIDlas~Pg~td-----f-~~Ak~~G~~a~~~~glP  265 (287)
T TIGR02853       216 TIPALVLTADVLSKLPKHA-VIIDLASKPGGTD-----F-EYAKKRGIKALLAPGLP  265 (287)
T ss_pred             CCChHHhCHHHHhcCCCCe-EEEEeCcCCCCCC-----H-HHHHHCCCEEEEeCCCC
Confidence            6633322222222233332 332  2 235543     3 67889999999988654

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.61  E-value=0.023  Score=47.34  Aligned_cols=32  Identities=19%  Similarity=0.361  Sum_probs=25.7

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      ||.|+|+ |++|..+++.+. ..++.=+.++|.+
T Consensus         1 ~VliiG~-GglGs~ia~~L~-~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLA-RSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHH-HCCCCEEEEEcCC
Confidence            6899998 999999999987 4666555677753

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.60  E-value=0.013  Score=58.44  Aligned_cols=118  Identities=16%  Similarity=0.209  Sum_probs=77.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCC-----------CeeecCCHHHHH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPL-----------EIPVMSDLTMVL   98 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~~~~~-----------gv~v~~dl~~~l   98 (303)
                      ..||+|.|+ |++|+..++.+. ..+.+||++.|+     +..|-|..++.......           +.. +.+.++++
T Consensus       232 g~rVaIqGf-GnVG~~~A~~L~-~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~-~i~~~~i~  308 (445)
T PRK09414        232 GKRVVVSGS-GNVAIYAIEKAQ-QLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE-YLEGGSPW  308 (445)
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe-ecCCcccc
Confidence            479999998 999999999887 578999999884     23466665443211110           111 12344555


Q ss_pred             hccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057           99 GSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus        99 ~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G-~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                      .     .++||+|-++..... .+++.....++..+|+|-. + .+++..+.|    +++  .+++.|-+.
T Consensus       309 ~-----~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L----~~r--GI~~vPD~l  368 (445)
T PRK09414        309 S-----VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVF----LEA--GVLFAPGKA  368 (445)
T ss_pred             c-----cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHH----HHC--CcEEECchh
Confidence            4     589999998865554 7777777777999999976 3 454432222    333  456667664

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.59  E-value=0.011  Score=53.52  Aligned_cols=117  Identities=12%  Similarity=0.150  Sum_probs=73.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCC-CCCCeeec-----CCHHHHHhcccc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-QPLEIPVM-----SDLTMVLGSISQ  103 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~-~~~gv~v~-----~dl~~~l~~~~~  103 (303)
                      .+||+|.|+ |++|+.+++.+.+ .+..+|++.|.+     + |-|..++.... ...++..+     .+.++++.    
T Consensus        23 g~~vaIqGf-GnVG~~~a~~L~~-~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----   95 (217)
T cd05211          23 GLTVAVQGL-GNVGWGLAKKLAE-EGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGSARVKVQDYFPGEAILG----   95 (217)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-cCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCccccCcccccCccccee----
Confidence            589999997 9999999998874 589999999963     3 55544333110 01122221     12345553    


Q ss_pred             CCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057          104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (303)
Q Consensus       104 ~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT--G~~~e~~~~L~~~a~~~~i~vv~a~N~Si  167 (303)
                       .++||+|.++.....  +-..+.+.+..+|+|.-  .++++. .++   -+++|  +++.|-+..
T Consensus        96 -~~~DVlipaA~~~~i--~~~~a~~l~a~~V~e~AN~p~t~~a-~~~---L~~~G--i~v~Pd~~~  152 (217)
T cd05211          96 -LDVDIFAPCALGNVI--DLENAKKLKAKVVAEGANNPTTDEA-LRI---LHERG--IVVAPDIVA  152 (217)
T ss_pred             -ccccEEeeccccCcc--ChhhHhhcCccEEEeCCCCCCCHHH-HHH---HHHCC--cEEEChHHh
Confidence             589999988865543  22334467899999876  355533 222   24434  677787665

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function

Probab=96.56  E-value=0.048  Score=49.44  Aligned_cols=149  Identities=15%  Similarity=0.132  Sum_probs=101.1

Q ss_pred             CcHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC-CchhHHH
Q 022057           44 VKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYD  121 (303)
Q Consensus        44 ~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT-~p~a~~~  121 (303)
                      .|+-|..+.+.+.+.++++ .+..++.+.   ...++           .++.++.|..+   .++|++|..+ +|+..++
T Consensus         5 ~G~yGeR~~~~i~~~~~~~~~v~~~~~p~---~l~ef-----------Id~pee~Lp~i---~~~Dl~I~y~lHPDl~~~   67 (217)
T PF02593_consen    5 DGKYGERVIENIKNYFDFCRSVIVYEIPE---DLPEF-----------IDDPEEYLPKI---PEADLLIAYGLHPDLTYE   67 (217)
T ss_pred             eCcchHHHHHHHHhcCCCCceEEEEeCCc---ccccc-----------ccChHHHccCC---CCCCEEEEeccCchhHHH
Confidence            4889999999999888876 344454331   22222           23445555432   6789999977 8999999


Q ss_pred             HHHHHHHcCCCeEEeCCCCCH--HHHHHHHHHhhhcCCeEEEcCCCc----HHHHHHHHHHHHhccCCCcEEE-EEcc--
Q 022057          122 NVKQATAFGMRSVVYVPHIQL--ETVSALSAFCDKASMGCLIAPTLS----IGSILLQQAAISASFHYKNVEI-VESR--  192 (303)
Q Consensus       122 ~~~~al~~g~~vVigTTG~~~--e~~~~L~~~a~~~~i~vv~a~N~S----iGv~ll~~~a~~~~~~~~dieI-iE~H--  192 (303)
                      ..+.+.+.|...||.- +|+.  .-.+.|++.+++.|+-+...-.|-    -|--.+.+|++.+.+  +-+|| ++--  
T Consensus        68 l~~~~~e~g~kavIvp-~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~~~~p~i~~F~~~fGk--P~~ei~v~~~~I  144 (217)
T PF02593_consen   68 LPEIAKEAGVKAVIVP-SESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEENGNPQIDEFAEYFGK--PKVEIEVENGKI  144 (217)
T ss_pred             HHHHHHHcCCCEEEEe-cCCCccchHHHHHHHHHhcCceeecCccccccCCCCChhHHHHHHHhCC--ceEEEEecCCcE
Confidence            9999999999888753 3322  344568888888887766544332    123357888888765  44454 2332  


Q ss_pred             -C-C-CCCCCcHHHHHHHHHHHh
Q 022057          193 -P-N-ARDFPSPDATQIANNLSN  212 (303)
Q Consensus       193 -h-~-K~DaPSGTA~~l~~~i~~  212 (303)
                       . + +++||=|++..+|+.+.-
T Consensus       145 ~~V~VlR~aPCGsT~~vAk~l~G  167 (217)
T PF02593_consen  145 KDVKVLRSAPCGSTWFVAKRLIG  167 (217)
T ss_pred             EEEEEEecCCCccHHHHHHHhcC
Confidence             1 3 799999999999998854

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.55  E-value=0.016  Score=55.01  Aligned_cols=96  Identities=16%  Similarity=0.139  Sum_probs=56.3

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC--C---------CCCeeecCCHHHHHhc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME--Q---------PLEIPVMSDLTMVLGS  100 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~--~---------~~gv~v~~dl~~~l~~  100 (303)
                      |||||+|+|+ |.||..++..+.+ .+.++.. +|++.   ....+.  |..  .         ...+...++.+ .+  
T Consensus         1 ~~mkI~IiG~-G~mG~~~A~~L~~-~G~~V~~-~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~--   71 (341)
T PRK08229          1 MMARICVLGA-GSIGCYLGGRLAA-AGADVTL-IGRAR---IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPA-AL--   71 (341)
T ss_pred             CCceEEEECC-CHHHHHHHHHHHh-cCCcEEE-EecHH---HHHHHHhcCceeecCCCcceecccceeEeccChh-hc--
Confidence            7889999998 9999999998875 4677765 45421   111111  100  0         00122344543 33  


Q ss_pred             cccCCCccEEEEcCCchhHHHHHHHHHH---cCCCeEEeCCCCCH
Q 022057          101 ISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL  142 (303)
Q Consensus       101 ~~~~~~~DVvIDfT~p~a~~~~~~~al~---~g~~vVigTTG~~~  142 (303)
                          .++|+||.++.+....+.+.....   .+..++.-+.|+..
T Consensus        72 ----~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~  112 (341)
T PRK08229         72 ----ATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRN  112 (341)
T ss_pred             ----cCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence                479999988766655555554433   34445545568864

>PLN02858 fructose-bisphosphate aldolase

Probab=96.53  E-value=0.03  Score=63.11  Aligned_cols=115  Identities=14%  Similarity=0.032  Sum_probs=76.1

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ++..||+++|. |.||..+++.+.+ .+++|. ++|++.  .....+.    +.|+...+++.++.+      .+|+||-
T Consensus         2 ~~~~~IGfIGL-G~MG~~mA~~L~~-~G~~v~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~a~------~advVi~   66 (1378)
T PLN02858          2 QSAGVVGFVGL-DSLSFELASSLLR-SGFKVQ-AFEIST--PLMEKFC----ELGGHRCDSPAEAAK------DAAALVV   66 (1378)
T ss_pred             CCCCeEEEEch-hHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEE
Confidence            34568999997 9999999999884 578875 578652  2223333    346777889999874      6898886


Q ss_pred             cC-CchhHHHHH---HHHHHcC--CCeEEeCCCCCHHHHHHHHHHhhhcC--CeEEEc
Q 022057          113 FT-DASTVYDNV---KQATAFG--MRSVVYVPHIQLETVSALSAFCDKAS--MGCLIA  162 (303)
Q Consensus       113 fT-~p~a~~~~~---~~al~~g--~~vVigTTG~~~e~~~~L~~~a~~~~--i~vv~a  162 (303)
                      +- .++.+.+.+   .-.++.-  -.+|+-++..+++..+++.+.+++.|  +..+=+
T Consensus        67 ~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa  124 (1378)
T PLN02858         67 VLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA  124 (1378)
T ss_pred             EcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence            54 445555554   1233321  14666666667777888888877777  554433

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=96.51  E-value=0.0035  Score=60.75  Aligned_cols=35  Identities=34%  Similarity=0.483  Sum_probs=30.4

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhc----CCcEEEEEEec
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDS   69 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~----~~~eLvg~vd~   69 (303)
                      |++||+|+|+ ||+||.+.+++.+.    +++|+|++-|+
T Consensus         2 m~ikVgINGF-GRIGR~v~R~~~~~~~~~~~ievVAINd~   40 (361)
T PTZ00434          2 APIKVGINGF-GRIGRMVFQAICDQGLIGTEIDVVAVVDM   40 (361)
T ss_pred             CceEEEEECc-ChHHHHHHHHHHHcccCCCCeEEEEEeCC
Confidence            4589999998 99999999998764    68999999873

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.48  E-value=0.021  Score=54.91  Aligned_cols=93  Identities=14%  Similarity=0.162  Sum_probs=60.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .+|+|+|+ |.||+.+++.+. ..+++++....+..  .. ...+   ...|+.+. |.++++      ..+|+|+-..+
T Consensus        18 ktIgIIG~-GsmG~AlA~~L~-~sG~~Vvv~~r~~~--~s-~~~A---~~~G~~~~-s~~eaa------~~ADVVvLaVP   82 (330)
T PRK05479         18 KKVAIIGY-GSQGHAHALNLR-DSGVDVVVGLREGS--KS-WKKA---EADGFEVL-TVAEAA------KWADVIMILLP   82 (330)
T ss_pred             CEEEEEee-HHHHHHHHHHHH-HCCCEEEEEECCch--hh-HHHH---HHCCCeeC-CHHHHH------hcCCEEEEcCC
Confidence            68999998 999999999987 46788876544321  11 1112   13455544 788887      47999998888


Q ss_pred             chhHHHHH-HHHHH---cCCCeEEeCCCCCHHH
Q 022057          116 ASTVYDNV-KQATA---FGMRSVVYVPHIQLET  144 (303)
Q Consensus       116 p~a~~~~~-~~al~---~g~~vVigTTG~~~e~  144 (303)
                      |+...+.+ ...+.   .|. +|+=..|++-..
T Consensus        83 d~~~~~V~~~~I~~~Lk~g~-iL~~a~G~~i~~  114 (330)
T PRK05479         83 DEVQAEVYEEEIEPNLKEGA-ALAFAHGFNIHF  114 (330)
T ss_pred             HHHHHHHHHHHHHhcCCCCC-EEEECCCCChhh
Confidence            77776665 33333   233 445456887644

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.48  E-value=0.049  Score=54.81  Aligned_cols=114  Identities=11%  Similarity=0.049  Sum_probs=66.3

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC-CCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ-PLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~-~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      +|+++|. |.||+.+++.+.+ .+++|+ ++|++.  .....+..... ..++..+.+++++.+++   .++|+||-+-+
T Consensus         1 ~IG~IGL-G~MG~~mA~nL~~-~G~~V~-v~drt~--~~~~~l~~~~~~g~~~~~~~s~~e~v~~l---~~~dvIil~v~   72 (467)
T TIGR00873         1 DIGVIGL-AVMGSNLALNMAD-HGFTVS-VYNRTP--EKTDEFLAEHAKGKKIVGAYSIEEFVQSL---ERPRKIMLMVK   72 (467)
T ss_pred             CEEEEee-HHHHHHHHHHHHh-cCCeEE-EEeCCH--HHHHHHHhhccCCCCceecCCHHHHHhhc---CCCCEEEEECC
Confidence            4899997 9999999999985 577765 577642  22223321100 01255567888876531   36898887665


Q ss_pred             c-hhHHHHHHH---HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeE
Q 022057          116 A-STVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC  159 (303)
Q Consensus       116 p-~a~~~~~~~---al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~v  159 (303)
                      + +.+.+.+..   +++.|.-+|-++|....+..+...+ .++.|+..
T Consensus        73 ~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~-l~~~gi~f  119 (467)
T TIGR00873        73 AGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE-LKAKGILF  119 (467)
T ss_pred             CcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH-HHhcCCEE
Confidence            5 444554433   3445655665666554443344444 44556653

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK06091 membrane protein FdrA; Validated

Probab=96.46  E-value=0.015  Score=59.31  Aligned_cols=75  Identities=8%  Similarity=0.109  Sum_probs=65.0

Q ss_pred             CeeecCCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057           87 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus        87 gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      .+|.+.++.++++++   ..+|+++.+.+++.+.+.++.|++.|+++++=+.|+..+..++|.++|+++|+. ++.||=
T Consensus       101 ~~~~~~t~~~a~~~l---pe~DLAvIsVPa~~v~~al~ea~~~G~~viI~S~gfg~~~E~~L~e~Ar~~Glr-vmGPNC  175 (555)
T PRK06091        101 SLTQVRRWDSACQKL---PDANLALISVAGEYAAELAEQALDRNLNVMMFSDNVTLEDEIRLKTRAREKGLL-VMGPDC  175 (555)
T ss_pred             CCcccccHHHHHhcC---CCCCEEEEecCHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHHHcCCE-EECCCC
Confidence            456778888887642   457999999999999999999999999999988899888788999999999977 789998

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.44  E-value=0.01  Score=56.34  Aligned_cols=80  Identities=24%  Similarity=0.262  Sum_probs=49.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee--ecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ..||+|+|+ |.||+.+++.+.. .+..-+.+++++.  ..+.+++   .+++..  .++++.+.+      .++|+||.
T Consensus       178 ~~~V~ViGa-G~iG~~~a~~L~~-~g~~~V~v~~r~~--~ra~~la---~~~g~~~~~~~~~~~~l------~~aDvVi~  244 (311)
T cd05213         178 GKKVLVIGA-GEMGELAAKHLAA-KGVAEITIANRTY--ERAEELA---KELGGNAVPLDELLELL------NEADVVIS  244 (311)
T ss_pred             CCEEEEECc-HHHHHHHHHHHHH-cCCCEEEEEeCCH--HHHHHHH---HHcCCeEEeHHHHHHHH------hcCCEEEE
Confidence            478999998 9999999998875 5555566677642  2222333   123322  234556665      36899998


Q ss_pred             cCCchhHHHHHHHHH
Q 022057          113 FTDASTVYDNVKQAT  127 (303)
Q Consensus       113 fT~p~a~~~~~~~al  127 (303)
                      +|......+.+...+
T Consensus       245 at~~~~~~~~~~~~~  259 (311)
T cd05213         245 ATGAPHYAKIVERAM  259 (311)
T ss_pred             CCCCCchHHHHHHHH
Confidence            886544444444443

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=96.43  E-value=0.0083  Score=56.08  Aligned_cols=80  Identities=21%  Similarity=0.307  Sum_probs=49.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC-
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT-  114 (303)
                      |||.|+|++|-+|+.+.+.+.+ .++++++. ++..  -|+            .-.+.+.+.+.+    .+||+||.+. 
T Consensus         1 MriLI~GasG~lG~~l~~~l~~-~~~~v~~~-~r~~--~dl------------~d~~~~~~~~~~----~~pd~Vin~aa   60 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKE-RGYEVIAT-SRSD--LDL------------TDPEAVAKLLEA----FKPDVVINCAA   60 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTT-TSEEEEEE-STTC--S-T------------TSHHHHHHHHHH----H--SEEEE---
T ss_pred             CEEEEECCCCHHHHHHHHHHhh-CCCEEEEe-Cchh--cCC------------CCHHHHHHHHHH----hCCCeEeccce
Confidence            7999999999999999998875 77888775 4321  111            112234455543    4799999975 


Q ss_pred             ---------Cchh--------HHHHHHHHHHcCCCeEE
Q 022057          115 ---------DAST--------VYDNVKQATAFGMRSVV  135 (303)
Q Consensus       115 ---------~p~a--------~~~~~~~al~~g~~vVi  135 (303)
                               .|+.        ....++.|.++|.++|-
T Consensus        61 ~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~   98 (286)
T PF04321_consen   61 YTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIH   98 (286)
T ss_dssp             ---HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEE
T ss_pred             eecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEE
Confidence                     2322        23456777889988873

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.39  E-value=0.0042  Score=59.92  Aligned_cols=34  Identities=29%  Similarity=0.299  Sum_probs=30.9

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      |++||+|+|+ ||+||.+.+.+.+.+++|+|++=|
T Consensus         1 m~~kv~INGf-GRIGR~v~R~~~~~~~~~ivaiNd   34 (342)
T PTZ00353          1 LPITVGINGF-GPVGKAVLFASLTDPLVTVVAVND   34 (342)
T ss_pred             CCeEEEEECC-ChHHHHHHHHHHhcCCcEEEEecC
Confidence            5589999998 999999999988788999999876

>PRK08328 hypothetical protein; Provisional

Probab=96.36  E-value=0.025  Score=51.52  Aligned_cols=33  Identities=21%  Similarity=0.280  Sum_probs=26.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ..||.|+|+ |..|..+++.+.. .++.=+-++|.
T Consensus        27 ~~~VlIiG~-GGlGs~ia~~La~-~Gvg~i~lvD~   59 (231)
T PRK08328         27 KAKVAVVGV-GGLGSPVAYYLAA-AGVGRILLIDE   59 (231)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcC
Confidence            468999999 9999999998874 56655556774

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.33  E-value=0.025  Score=50.89  Aligned_cols=34  Identities=26%  Similarity=0.380  Sum_probs=26.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      ..||+|+|+ |.||..+++.+.. .++.=+.++|.+
T Consensus        28 ~~~V~ViG~-GglGs~ia~~La~-~Gvg~i~lvD~D   61 (212)
T PRK08644         28 KAKVGIAGA-GGLGSNIAVALAR-SGVGNLKLVDFD   61 (212)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence            368999998 9999999999874 566655567743

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.32  E-value=0.021  Score=53.98  Aligned_cols=114  Identities=14%  Similarity=0.131  Sum_probs=69.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--cCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ..||+|+|+ |++|+.++..+.. -+.++.. +|++.  .. .+.+   ...|...  +.++.+.+      .++|+||+
T Consensus       152 g~kvlViG~-G~iG~~~a~~L~~-~Ga~V~v-~~r~~--~~-~~~~---~~~G~~~~~~~~l~~~l------~~aDiVI~  216 (296)
T PRK08306        152 GSNVLVLGF-GRTGMTLARTLKA-LGANVTV-GARKS--AH-LARI---TEMGLSPFHLSELAEEV------GKIDIIFN  216 (296)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHH-CCCEEEE-EECCH--HH-HHHH---HHcCCeeecHHHHHHHh------CCCCEEEE
Confidence            479999998 9999999998875 5676654 56542  11 1111   1234332  34666676      47999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeE-EeC-CCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          113 FTDASTVYDNVKQATAFGMRSV-VYV-PHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vV-igT-TG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      .+++....+-....++.+.-+| +++ +|-++     + +.+++.|++.++.+|..=++
T Consensus       217 t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd-----~-~~a~~~Gv~~~~~~~lpg~v  269 (296)
T PRK08306        217 TIPALVLTKEVLSKMPPEALIIDLASKPGGTD-----F-EYAEKRGIKALLAPGLPGKV  269 (296)
T ss_pred             CCChhhhhHHHHHcCCCCcEEEEEccCCCCcC-----e-eehhhCCeEEEEECCCCccC
Confidence            7755433333333344443333 232 24443     2 36788899999999887665

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=96.29  E-value=0.04  Score=52.19  Aligned_cols=128  Identities=18%  Similarity=0.181  Sum_probs=85.1

Q ss_pred             EEeecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccC
Q 022057           25 ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS  104 (303)
Q Consensus        25 ~~~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~  104 (303)
                      .+++..+++ +.|||-+|- |.||..++..+.+ .++.|+ ++|+..  ....++.    +.|..+.+++.|+.      
T Consensus        26 ~~s~~~~~s-~~~iGFIGL-G~MG~~M~~nLik-~G~kVt-V~dr~~--~k~~~f~----~~Ga~v~~sPaeVa------   89 (327)
T KOG0409|consen   26 AMSSRITPS-KTRIGFIGL-GNMGSAMVSNLIK-AGYKVT-VYDRTK--DKCKEFQ----EAGARVANSPAEVA------   89 (327)
T ss_pred             cccccCCcc-cceeeEEee-ccchHHHHHHHHH-cCCEEE-EEeCcH--HHHHHHH----HhchhhhCCHHHHH------
Confidence            566666655 579999996 9999999999885 577776 577642  1122332    46788889999998      


Q ss_pred             CCccEEEEc-CCchhHHHHHHH------HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          105 KARAVVIDF-TDASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       105 ~~~DVvIDf-T~p~a~~~~~~~------al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      +.+||+|-. +.|..+.+.+.-      .+.-|.+..+-.+..+++-..+|.+.++..+...+ -+--|=|+
T Consensus        90 e~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~v-DAPVSGg~  160 (327)
T KOG0409|consen   90 EDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFV-DAPVSGGV  160 (327)
T ss_pred             hhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEE-eccccCCc
Confidence            479988763 466666665532      22345555445556677777788888877765544 34445444

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.28  E-value=0.029  Score=49.96  Aligned_cols=109  Identities=11%  Similarity=0.171  Sum_probs=63.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      ++|+|+|+ |+||+.+++.+.+ .+++++ ++|.+.  ....++.   ..++....+ .++++.     .++|+++-++.
T Consensus        29 k~v~I~G~-G~vG~~~A~~L~~-~G~~Vv-v~D~~~--~~~~~~~---~~~g~~~v~-~~~l~~-----~~~Dv~vp~A~   94 (200)
T cd01075          29 KTVAVQGL-GKVGYKLAEHLLE-EGAKLI-VADINE--EAVARAA---ELFGATVVA-PEEIYS-----VDADVFAPCAL   94 (200)
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCEEE-EEcCCH--HHHHHHH---HHcCCEEEc-chhhcc-----ccCCEEEeccc
Confidence            68999998 9999999998874 688998 677642  2222222   123443333 355553     47999985543


Q ss_pred             chhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057          116 ASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus       116 p~a~-~~~~~~al~~g~~vVigTT-G-~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                      .... .+++   .+.+.++|++-. + +++.+.   .+.-+++|  +++.|-|-
T Consensus        95 ~~~I~~~~~---~~l~~~~v~~~AN~~~~~~~~---~~~L~~~G--i~~~Pd~~  140 (200)
T cd01075          95 GGVINDDTI---PQLKAKAIAGAANNQLADPRH---GQMLHERG--ILYAPDYV  140 (200)
T ss_pred             ccccCHHHH---HHcCCCEEEECCcCccCCHhH---HHHHHHCC--CEEeCcee
Confidence            3322 4444   345688888865 3 442222   22235544  45556443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.23  E-value=0.02  Score=55.74  Aligned_cols=120  Identities=10%  Similarity=0.055  Sum_probs=71.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEE---EEEEecCCCCcchhhhhcCCCCCCeeecCCHHH--HHhccccCCCccEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEV---AGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM--VLGSISQSKARAVV  110 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eL---vg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~--~l~~~~~~~~~DVv  110 (303)
                      +||||+|+||-+|+.+++.+.+++++.+   ....+....|+.. .+.+  .+  ..+. ++++  .+      .++|++
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~-~f~~--~~--~~v~-~~~~~~~~------~~vDiv   68 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAP-SFGG--TT--GTLQ-DAFDIDAL------KALDII   68 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcC-CCCC--Cc--ceEE-cCcccccc------cCCCEE
Confidence            4899999999999999998887777753   3333322222221 1111  11  1221 2211  23      478998


Q ss_pred             EEcCCchhHHHHHHHHHHcCCC-eEEeCCC-C-------------CHHHHHHHHHHhhhcCCeEEEcCCCcHHHHH
Q 022057          111 IDFTDASTVYDNVKQATAFGMR-SVVYVPH-I-------------QLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~-vVigTTG-~-------------~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~l  171 (303)
                      +=+...+...+....+.++|.+ +||-.++ |             +++   .|... .+.|+.-+..||=|.-..+
T Consensus        69 ffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~---~i~~~-~~~gi~~ianPNCst~~l~  140 (366)
T TIGR01745        69 ITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQD---VITDG-LNNGIRTFVGGNCTVSLML  140 (366)
T ss_pred             EEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHH---HHHhH-HhCCcCeEECcCHHHHHHH
Confidence            8445666678899999999975 5555542 2             233   33332 2345543678998776543

>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins

Probab=96.19  E-value=0.0099  Score=56.40  Aligned_cols=86  Identities=21%  Similarity=0.185  Sum_probs=61.3

Q ss_pred             EecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC------CchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057           67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYDNVKQATAFGMRSVVYVPHI  140 (303)
Q Consensus        67 vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT------~p~a~~~~~~~al~~g~~vVigTTG~  140 (303)
                      +|++..|++++++.+.  ..++|++++++++ .     ..+|++|--.      .|+...+.+..|+++|+++|.|---+
T Consensus         1 ID~~~aG~~a~e~~~~--~~~iPi~~~~~~a-~-----~~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~IvsGLH~~   72 (301)
T PF07755_consen    1 IDSRLAGKDAGEVLGG--KRGIPIVASLEEA-A-----AGADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDIVSGLHDF   72 (301)
T ss_dssp             E-TTTTTSBHHHCCSS--SS--BEESSHHHH-H-----CT-SEEEE---STTHCCHCCHHHHHHHHHHTT-EEEE-SSS-
T ss_pred             CCcccCCCcHHHhcCC--CCCCCccCCHHHH-h-----cCCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCEEecChhh
Confidence            5777789999999985  3899999999999 3     5899888632      47888999999999999999875432


Q ss_pred             CHHHHHHHHHHhhhcCCeEEE
Q 022057          141 QLETVSALSAFCDKASMGCLI  161 (303)
Q Consensus       141 ~~e~~~~L~~~a~~~~i~vv~  161 (303)
                       -.+..+|.++|+++|+.++=
T Consensus        73 -L~ddpel~~~A~~~g~~i~D   92 (301)
T PF07755_consen   73 -LSDDPELAAAAKKNGVRIID   92 (301)
T ss_dssp             -HCCHHHHHCCHHCCT--EEE
T ss_pred             -hccCHHHHHHHHHcCCeEee
Confidence             23446789999999888764

The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.19  E-value=0.043  Score=51.28  Aligned_cols=32  Identities=25%  Similarity=0.269  Sum_probs=26.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      .||+|+|+ |.||..++..+.. .+++++ ++|++
T Consensus         5 ~kI~vIGa-G~mG~~iA~~la~-~G~~V~-l~d~~   36 (292)
T PRK07530          5 KKVGVIGA-GQMGNGIAHVCAL-AGYDVL-LNDVS   36 (292)
T ss_pred             CEEEEECC-cHHHHHHHHHHHH-CCCeEE-EEeCC
Confidence            68999998 9999999998874 577776 46753

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=96.18  E-value=0.056  Score=49.81  Aligned_cols=94  Identities=19%  Similarity=0.212  Sum_probs=60.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----C-----------CCcchhh-----hhcCCCCCCeee----
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----S-----------VGEDIGM-----VCDMEQPLEIPV----   90 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~-----------~g~d~~~-----~~g~~~~~gv~v----   90 (303)
                      -+|.|+|. |++|+..++++.. .++.=.-.+|.+     .           .|+.--+     +..+.....|..    
T Consensus        31 ~~V~VvGi-GGVGSw~veALaR-sGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f  108 (263)
T COG1179          31 AHVCVVGI-GGVGSWAVEALAR-SGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF  108 (263)
T ss_pred             CcEEEEec-CchhHHHHHHHHH-cCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence            37999998 9999999999884 565444456521     1           1211100     111112223322    


Q ss_pred             --cCCHHHHHhccccCCCccEEEEcCC-chhHHHHHHHHHHcCCCeEEe
Q 022057           91 --MSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY  136 (303)
Q Consensus        91 --~~dl~~~l~~~~~~~~~DVvIDfT~-p~a~~~~~~~al~~g~~vVig  136 (303)
                        -+++++++.     .++|.|||+.. -.+=.+.+.+|.++++|+|..
T Consensus       109 ~t~en~~~~~~-----~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss  152 (263)
T COG1179         109 ITEENLEDLLS-----KGFDYVIDAIDSVRAKVALIAYCRRNKIPVISS  152 (263)
T ss_pred             hCHhHHHHHhc-----CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEee
Confidence              236677775     58999999984 444578889999999998853

>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase

Probab=96.17  E-value=0.041  Score=54.90  Aligned_cols=122  Identities=10%  Similarity=0.096  Sum_probs=71.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCC---Cc-------------c---hhhhhc-CCC-CCCeeec-
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV---GE-------------D---IGMVCD-MEQ-PLEIPVM-   91 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~---g~-------------d---~~~~~g-~~~-~~gv~v~-   91 (303)
                      +.||+|.|+||-+|+..++.+.+.|+ +++++.......   ..             +   ..++-. +.. ..+..++ 
T Consensus        57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~  136 (454)
T PLN02696         57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEIIP  136 (454)
T ss_pred             ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEEE
Confidence            47999999999999999999888765 889887653211   00             0   000000 000 0012332 


Q ss_pred             --CCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057           92 --SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus        92 --~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv  160 (303)
                        +.+.++..    ..++|+||..-.--+...-...|+++|+.|....--.--.-=+.|.++++++|+.++
T Consensus       137 G~egl~~la~----~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALANKESLV~aG~lI~~~ak~~~~~Il  203 (454)
T PLN02696        137 GEEGIVEVAR----HPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHGVKIL  203 (454)
T ss_pred             CHHHHHHHHc----CCCCCEEEEeCccccchHHHHHHHHCCCcEEEecHHHHHhhHHHHHHHHHHcCCeEe
Confidence              24555554    256899997766655555568889999998875421000011235566666665544

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.16  E-value=0.045  Score=51.36  Aligned_cols=100  Identities=12%  Similarity=0.166  Sum_probs=55.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcch---------hhhhcCCC---------CCCeeecCCHHHH
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI---------GMVCDMEQ---------PLEIPVMSDLTMV   97 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~---------~~~~g~~~---------~~gv~v~~dl~~~   97 (303)
                      -||+|+|+ |.||+.++..++ ..+++++ ++|.+....+.         ..+...+.         ...+.+.+|+++ 
T Consensus         6 ~~V~ViGa-G~mG~~iA~~~a-~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-   81 (286)
T PRK07819          6 QRVGVVGA-GQMGAGIAEVCA-RAGVDVL-VFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-   81 (286)
T ss_pred             cEEEEEcc-cHHHHHHHHHHH-hCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-
Confidence            48999998 999999999877 4588866 46643100000         00111000         012335677754 


Q ss_pred             HhccccCCCccEEEEcCCch-----hHHHHHHHHH-HcCCCeEEeCCCCCHHHH
Q 022057           98 LGSISQSKARAVVIDFTDAS-----TVYDNVKQAT-AFGMRSVVYVPHIQLETV  145 (303)
Q Consensus        98 l~~~~~~~~~DVvIDfT~p~-----a~~~~~~~al-~~g~~vVigTTG~~~e~~  145 (303)
                      +      .++|+||++-.-+     .+...+..++ ..+..++.-|+++...++
T Consensus        82 ~------~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~l  129 (286)
T PRK07819         82 F------ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKL  129 (286)
T ss_pred             h------CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence            4      4789999875322     1222333333 445555555567766543

>COG3367 Uncharacterized conserved protein [Function unknown]

Probab=96.16  E-value=0.015  Score=55.49  Aligned_cols=94  Identities=13%  Similarity=0.208  Sum_probs=71.0

Q ss_pred             cCCcEEEEEEecCCCCcchh-hhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC------CchhHHHHHHHHHHcC
Q 022057           58 ARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYDNVKQATAFG  130 (303)
Q Consensus        58 ~~~~eLvg~vd~~~~g~d~~-~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT------~p~a~~~~~~~al~~g  130 (303)
                      .+.+++++++|+...+.+.. ++.+  ...++|+.+|.+++++.     ..|++|.-.      .|+...+.++.|+++|
T Consensus        25 ~~~~~iv~vvD~~~~~~~~~~~l~~--~~~~vpii~s~~~~~e~-----~~e~liIgia~~gG~~~~~~~~~i~eAl~~G   97 (339)
T COG3367          25 SEKYAIVAVVDRREAGDDTPRELGG--DKADVPIISSVEEALEG-----LAEALIIGIAPPGGVLPESWREYIVEALEAG   97 (339)
T ss_pred             cccceeeeEEeeeccccccHHHhCC--ccCCCcccccHHHHHhc-----CcceEEEEeecCCCcCcHHHHHHHHHHHHhC
Confidence            44589999999877664443 4444  46899999999999973     458777643      3677889999999999


Q ss_pred             CCeEEeCCCCCHHHHHHHHHHhhhcCCeE
Q 022057          131 MRSVVYVPHIQLETVSALSAFCDKASMGC  159 (303)
Q Consensus       131 ~~vVigTTG~~~e~~~~L~~~a~~~~i~v  159 (303)
                      ++||.|---+ -++..++.++|++.|+.+
T Consensus        98 ~nVvsglh~~-ls~dp~~~k~A~~~G~rl  125 (339)
T COG3367          98 MNVVSGLHSF-LSDDPEFVKLAERTGVRL  125 (339)
T ss_pred             chhhhhhHHH-hhcChHHHHHHHHcCCee
Confidence            9999765444 456678999999988743

>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.14  E-value=0.085  Score=48.98  Aligned_cols=151  Identities=15%  Similarity=0.192  Sum_probs=89.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC--------CcEEEEEEecCC--CCcch------hhhhc-CCCCCCeeecCCHHHH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHS--VGEDI------GMVCD-MEQPLEIPVMSDLTMV   97 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~--------~~eLvg~vd~~~--~g~d~------~~~~g-~~~~~gv~v~~dl~~~   97 (303)
                      .++|+++|| |.+|+.+.+.+..-.        .+.+|++.|.+.  ..+|.      .+|.. +....+-  .-+++++
T Consensus         3 ~vnVa~~G~-G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~~--alsLdaL   79 (364)
T KOG0455|consen    3 KVNVALMGC-GGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTGS--ALSLDAL   79 (364)
T ss_pred             cccEEEEec-cchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcCC--cccHHHH
Confidence            578999998 999999998876432        357888887421  11111      11110 0011111  1247777


Q ss_pred             HhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHH--HHHH
Q 022057           98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGSI--LLQQ  174 (303)
Q Consensus        98 l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~--ll~~  174 (303)
                      ++.++....+-++||.|......+....+++.|+.++.-.- .|+. ..+.-+.++..+..|-++----++|.-  ++.-
T Consensus        80 ia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss-~l~~y~~l~~~~~s~~fi~HEatVGAGLPiIs~  158 (364)
T KOG0455|consen   80 IAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSS-TLEHYDKLALHSKSPRFIRHEATVGAGLPIISS  158 (364)
T ss_pred             HHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCcccccc-cHHHHHHHHhcCCCCceEEeeccccCCchhHHH
Confidence            76665567788999999999999999999999999874322 4553 223334444443345555555566653  3333


Q ss_pred             HHHHhccCCCcEEEEE
Q 022057          175 AAISASFHYKNVEIVE  190 (303)
Q Consensus       175 ~a~~~~~~~~dieIiE  190 (303)
                      |-+.++ ....++-||
T Consensus       159 L~eiI~-tGDev~kIe  173 (364)
T KOG0455|consen  159 LNEIIS-TGDEVHKIE  173 (364)
T ss_pred             HHHHHh-cCCceeEEE
Confidence            333333 334455454

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=96.14  E-value=0.035  Score=52.72  Aligned_cols=33  Identities=27%  Similarity=0.209  Sum_probs=28.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      ||||.|.|++|-+|+.+++.+.+..+.++++..
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~   33 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMD   33 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence            568999999999999999999876678888753

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.14  E-value=0.045  Score=49.58  Aligned_cols=124  Identities=18%  Similarity=0.207  Sum_probs=66.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhh-hhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGM-VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~-~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ..||.|+|+ |.+|..+++.+.. .++.-+.++|.+.. -.++.. +....+..|-+-...+.+.+.+    -.+++=|+
T Consensus        21 ~~~VlivG~-GglGs~va~~La~-~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~----~np~~~i~   94 (228)
T cd00757          21 NARVLVVGA-GGLGSPAAEYLAA-AGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRA----INPDVEIE   94 (228)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHH----hCCCCEEE
Confidence            469999998 9999999999874 57766667775311 011100 0000001111111112222322    35565554


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                      .-+-....+++...+ .+.++|+.++. +.+....|.++|.+.++|++.+....
T Consensus        95 ~~~~~i~~~~~~~~~-~~~DvVi~~~d-~~~~r~~l~~~~~~~~ip~i~~g~~g  146 (228)
T cd00757          95 AYNERLDAENAEELI-AGYDLVLDCTD-NFATRYLINDACVKLGKPLVSGAVLG  146 (228)
T ss_pred             EecceeCHHHHHHHH-hCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEEecc
Confidence            332222223333322 35788887765 33455678888888888888775544

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK08605 D-lactate dehydrogenase; Validated

Probab=96.12  E-value=0.026  Score=54.20  Aligned_cols=105  Identities=17%  Similarity=0.147  Sum_probs=60.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -++|+|+|+ |+||+.+++.+.+.-++++.+ +|+... ..   .     ...+....++++++.      .+|+|+-..
T Consensus       146 g~~VgIIG~-G~IG~~vA~~L~~~~g~~V~~-~d~~~~-~~---~-----~~~~~~~~~l~ell~------~aDvIvl~l  208 (332)
T PRK08605        146 DLKVAVIGT-GRIGLAVAKIFAKGYGSDVVA-YDPFPN-AK---A-----ATYVDYKDTIEEAVE------GADIVTLHM  208 (332)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCEEEE-ECCCcc-Hh---H-----HhhccccCCHHHHHH------hCCEEEEeC
Confidence            368999998 999999999885445788765 665421 11   0     112334568999984      799998665


Q ss_pred             CchhHHHHH-----HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCC
Q 022057          115 DASTVYDNV-----KQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (303)
Q Consensus       115 ~p~a~~~~~-----~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i  157 (303)
                      +.......+     ...++.|.-+|--++|.-.++ +.|.++.+++.+
T Consensus       209 P~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~-~aL~~aL~~g~i  255 (332)
T PRK08605        209 PATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDT-KALLDALDNGLI  255 (332)
T ss_pred             CCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCH-HHHHHHHHhCCe
Confidence            322222222     223445554444444644333 345555555444

>PRK07411 hypothetical protein; Validated

Probab=96.09  E-value=0.032  Score=54.78  Aligned_cols=98  Identities=16%  Similarity=0.211  Sum_probs=61.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-----CCc-------chh---------hhhcCCCCCCeeecC-
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGE-------DIG---------MVCDMEQPLEIPVMS-   92 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g~-------d~~---------~~~g~~~~~gv~v~~-   92 (303)
                      ..||.|+|| |.+|..+++.+. ..|+.=+.++|.+.     .++       |++         .+..+.....+..+. 
T Consensus        38 ~~~VlivG~-GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~  115 (390)
T PRK07411         38 AASVLCIGT-GGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET  115 (390)
T ss_pred             cCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence            468999999 999999999887 46776667777421     111       111         011111112222221 


Q ss_pred             -----CHHHHHhccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-CC
Q 022057           93 -----DLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-HI  140 (303)
Q Consensus        93 -----dl~~~l~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G~  140 (303)
                           +..+++      .++|+|||++..-.. .-.-..|.+.++|+|.|.. ||
T Consensus       116 ~~~~~~~~~~~------~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~  164 (390)
T PRK07411        116 RLSSENALDIL------APYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRF  164 (390)
T ss_pred             ccCHHhHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccC
Confidence                 233455      479999999854444 4455788999999998765 44

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.09  E-value=0.038  Score=51.60  Aligned_cols=100  Identities=15%  Similarity=0.132  Sum_probs=55.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhh--------h---cCC-------CCCCeeecCCHHH
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMV--------C---DME-------QPLEIPVMSDLTM   96 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~~--------~---g~~-------~~~gv~v~~dl~~   96 (303)
                      .||+|+|+ |.||+.++..+.. .+.++. ++|.+... ..+.+.        .   .+.       ....+..++|+++
T Consensus         4 ~kIaViGa-G~mG~~iA~~la~-~G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~   80 (287)
T PRK08293          4 KNVTVAGA-GVLGSQIAFQTAF-HGFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE   80 (287)
T ss_pred             cEEEEECC-CHHHHHHHHHHHh-cCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence            58999998 9999999998774 577755 45643100 000000        0   000       0124556788888


Q ss_pred             HHhccccCCCccEEEEcCCch--hHHHHHHH---HHHcCCCeEEeCCCCCHHH
Q 022057           97 VLGSISQSKARAVVIDFTDAS--TVYDNVKQ---ATAFGMRSVVYVPHIQLET  144 (303)
Q Consensus        97 ~l~~~~~~~~~DVvIDfT~p~--a~~~~~~~---al~~g~~vVigTTG~~~e~  144 (303)
                      ++      .++|+||.+.+.+  ...+.+..   ++..+..+++-|++++..+
T Consensus        81 a~------~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~  127 (287)
T PRK08293         81 AV------KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQ  127 (287)
T ss_pred             Hh------cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHH
Confidence            77      4799999876422  22333333   2333333334455666544

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.08  E-value=0.034  Score=51.95  Aligned_cols=99  Identities=12%  Similarity=0.156  Sum_probs=56.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---------cC----CC-------CCCeeecCCHH
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---------DM----EQ-------PLEIPVMSDLT   95 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---------g~----~~-------~~gv~v~~dl~   95 (303)
                      -||+|+|+ |.||+.++..+.+ .++++. ++|.+.  ..+..+.         +.    ..       ...+..+++++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~-~G~~V~-~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   76 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAV-SGFQTT-LVDIKQ--EQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLK   76 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHh-CCCcEE-EEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHH
Confidence            47999998 9999999998874 477766 467531  1111100         00    00       01245567888


Q ss_pred             HHHhccccCCCccEEEEcCCchh-HH-HH---HHHHHHcCCCeEEeCCCCCHHHH
Q 022057           96 MVLGSISQSKARAVVIDFTDAST-VY-DN---VKQATAFGMRSVVYVPHIQLETV  145 (303)
Q Consensus        96 ~~l~~~~~~~~~DVvIDfT~p~a-~~-~~---~~~al~~g~~vVigTTG~~~e~~  145 (303)
                      +.+      .++|+||.+.+.+. +. ..   +...+..+.-+++-|+.++..++
T Consensus        77 ~~~------~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l  125 (288)
T PRK09260         77 AAV------ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEI  125 (288)
T ss_pred             Hhh------cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence            777      47999997764332 12 22   22233334334455667777553

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.07  E-value=0.072  Score=47.78  Aligned_cols=95  Identities=16%  Similarity=0.106  Sum_probs=55.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc----CCCCCCe--ee-cCCHHHHHhccccCCCcc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD----MEQPLEI--PV-MSDLTMVLGSISQSKARA  108 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g----~~~~~gv--~v-~~dl~~~l~~~~~~~~~D  108 (303)
                      |||+|+|++|.||+.++..+.+ .+.+++. ++++.  .....+..    .....++  .+ ..+..+.+      .++|
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~-~G~~V~v-~~r~~--~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~------~~aD   70 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAK-AGNKIII-GSRDL--EKAEEAAAKALEELGHGGSDIKVTGADNAEAA------KRAD   70 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHh-CCCEEEE-EEcCH--HHHHHHHHHHHhhccccCCCceEEEeChHHHH------hcCC
Confidence            5899998449999999998875 4677764 45432  11111110    0001121  12 23455665      4789


Q ss_pred             EEEEcCCchhHHHHHHHHHH--cCCCeEEeCC-CCC
Q 022057          109 VVIDFTDASTVYDNVKQATA--FGMRSVVYVP-HIQ  141 (303)
Q Consensus       109 VvIDfT~p~a~~~~~~~al~--~g~~vVigTT-G~~  141 (303)
                      +||-+..+....+.+.....  .+ .+|+-++ |++
T Consensus        71 vVilavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~  105 (219)
T TIGR01915        71 VVILAVPWDHVLKTLESLRDELSG-KLVISPVVPLA  105 (219)
T ss_pred             EEEEECCHHHHHHHHHHHHHhccC-CEEEEeccCce
Confidence            99988888877777655432  24 4555544 654

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.05  E-value=0.07  Score=53.78  Aligned_cols=123  Identities=11%  Similarity=0.064  Sum_probs=67.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEecCC-------------CCcchhhhhcCCCCCCeeecCCHHHHHhc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHS-------------VGEDIGMVCDMEQPLEIPVMSDLTMVLGS  100 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd~~~-------------~g~d~~~~~g~~~~~gv~v~~dl~~~l~~  100 (303)
                      ||||+|+|+ |.+|...+-.+++. .+++++++ |.+.             ......++...........++|+++.+  
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i--   76 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHV--   76 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHH--
Confidence            579999997 99999999988764 36888875 5310             011222222100011255677787776  


Q ss_pred             cccCCCccEEEEcC-Cch--------------hHHH---HHHHHHHcCCCeEEeCC---CCCHHHHHHHHHHhhhcCCeE
Q 022057          101 ISQSKARAVVIDFT-DAS--------------TVYD---NVKQATAFGMRSVVYVP---HIQLETVSALSAFCDKASMGC  159 (303)
Q Consensus       101 ~~~~~~~DVvIDfT-~p~--------------a~~~---~~~~al~~g~~vVigTT---G~~~e~~~~L~~~a~~~~i~v  159 (303)
                          .++|+++-+- +|.              .+.+   .+...++.|.-||+.+|   |.+++-...|.+.....+..+
T Consensus        77 ----~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v  152 (473)
T PLN02353         77 ----AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQI  152 (473)
T ss_pred             ----hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEE
Confidence                4789887652 232              1122   22233445777787877   666544444544221112345


Q ss_pred             EEcCCC
Q 022057          160 LIAPTL  165 (303)
Q Consensus       160 v~a~N~  165 (303)
                      .++|=|
T Consensus       153 ~~~PEr  158 (473)
T PLN02353        153 LSNPEF  158 (473)
T ss_pred             EECCCc
Confidence            555544

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.04  E-value=0.068  Score=52.14  Aligned_cols=79  Identities=14%  Similarity=0.132  Sum_probs=50.2

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      .+.||+|+|+.|.||+.++..+.. .++++.+ +|++.                   .++.++++      .++|+||.+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~-~G~~V~~-~d~~~-------------------~~~~~~~~------~~aDlVila  149 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTL-SGYQVRI-LEQDD-------------------WDRAEDIL------ADAGMVIVS  149 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHH-CCCeEEE-eCCCc-------------------chhHHHHH------hcCCEEEEe
Confidence            357999999559999999998875 4666553 44421                   02345555      368888877


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCCC
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVPH  139 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTTG  139 (303)
                      +++....+.+......+...++..+|
T Consensus       150 vP~~~~~~~~~~l~~l~~~~iv~Dv~  175 (374)
T PRK11199        150 VPIHLTEEVIARLPPLPEDCILVDLT  175 (374)
T ss_pred             CcHHHHHHHHHHHhCCCCCcEEEECC
Confidence            77777677666554433333333333

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.03  E-value=0.11  Score=54.66  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=63.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCee--ecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      .||+|+|+ |.||..+++.+.+.. ..++. ++|++.  .......    +.|+.  ...++++++      .++|+||.
T Consensus         4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~-~~d~~~--~~~~~a~----~~g~~~~~~~~~~~~~------~~aDvVil   69 (735)
T PRK14806          4 GRVVVIGL-GLIGGSFAKALRERGLAREVV-AVDRRA--KSLELAV----SLGVIDRGEEDLAEAV------SGADVIVL   69 (735)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCCEEE-EEECCh--hHHHHHH----HCCCCCcccCCHHHHh------cCCCEEEE
Confidence            58999997 999999999988542 24544 467642  1112111    23332  345677776      47899998


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHh
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFC  152 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG~~~e~~~~L~~~a  152 (303)
                      +++|....+.+......  ...+|+-.++....-.+.+++..
T Consensus        70 avp~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~  111 (735)
T PRK14806         70 AVPVLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVF  111 (735)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhc
Confidence            88888777776655432  22355544555544445555543

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.00  E-value=0.05  Score=48.45  Aligned_cols=125  Identities=14%  Similarity=0.169  Sum_probs=63.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhh--hhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGM--VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~--~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ..||.|+|+ |.+|..+++.+.. .++.=+-++|.+.. -.++..  +... ...|-+-.....+.+.+    -.+++-|
T Consensus        21 ~~~VlviG~-GglGs~ia~~La~-~Gv~~i~lvD~d~ve~sNL~Rq~l~~~-~diG~~Ka~~~~~~l~~----~np~v~i   93 (202)
T TIGR02356        21 NSHVLIIGA-GGLGSPAALYLAG-AGVGTIVIVDDDHVDLSNLQRQILFTE-EDVGRPKVEVAAQRLRE----LNSDIQV   93 (202)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHH-cCCCeEEEecCCEEcccchhhhhccCh-hhCCChHHHHHHHHHHH----hCCCCEE
Confidence            468999998 9999999998875 46644456775311 011110  0000 01111111112222221    2455544


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHH
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiG  168 (303)
                      +.-......+++...+ .+.++|+.++.- .+....|.++|++.++|++.+......
T Consensus        94 ~~~~~~i~~~~~~~~~-~~~D~Vi~~~d~-~~~r~~l~~~~~~~~ip~i~~~~~g~~  148 (202)
T TIGR02356        94 TALKERVTAENLELLI-NNVDLVLDCTDN-FATRYLINDACVALGTPLISAAVVGFG  148 (202)
T ss_pred             EEehhcCCHHHHHHHH-hCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeccCe
Confidence            3222111123333333 356788777643 334456778888888888876655433

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.00  E-value=0.061  Score=47.83  Aligned_cols=124  Identities=19%  Similarity=0.242  Sum_probs=62.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh--hhcCC-CCCCeeecCCHHHHHhccccCCCccEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM--VCDME-QPLEIPVMSDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~--~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (303)
                      ..||.|+|+ |.+|..+++.+. ..++.=+-++|.+... .+...  +.... ...|-+-.....+.+.+    -.||+-
T Consensus        19 ~s~VlviG~-gglGsevak~L~-~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~----lNp~v~   92 (198)
T cd01485          19 SAKVLIIGA-GALGAEIAKNLV-LAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQE----LNPNVK   92 (198)
T ss_pred             hCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHH----HCCCCE
Confidence            468999998 889999999987 5687766778854210 11110  00000 00111111111222222    355654


Q ss_pred             EEcC--CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057          111 IDFT--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus       111 IDfT--~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                      |..-  .+....+...... ...++|+.++.- .+....+.++|++.++|++.+....
T Consensus        93 i~~~~~~~~~~~~~~~~~~-~~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G  148 (198)
T cd01485          93 LSIVEEDSLSNDSNIEEYL-QKFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYG  148 (198)
T ss_pred             EEEEecccccchhhHHHHH-hCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence            4321  1111122222222 245777766543 4455667777777777777765543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.99  E-value=0.039  Score=53.49  Aligned_cols=96  Identities=21%  Similarity=0.275  Sum_probs=59.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-----CCc-------chh----h-----hhcCCCCCCeeec--
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGE-------DIG----M-----VCDMEQPLEIPVM--   91 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g~-------d~~----~-----~~g~~~~~gv~v~--   91 (303)
                      ..||.|+|+ |.+|..+++.+. ..++.=..++|.+.     ..+       |.+    +     +..+.....+..+  
T Consensus        28 ~~~VlivG~-GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~  105 (355)
T PRK05597         28 DAKVAVIGA-GGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR  105 (355)
T ss_pred             CCeEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence            469999999 999999999887 56776667777421     111       111    0     1011112222221  


Q ss_pred             ----CCHHHHHhccccCCCccEEEEcCCc-hhHHHHHHHHHHcCCCeEEeCC
Q 022057           92 ----SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVvIDfT~p-~a~~~~~~~al~~g~~vVigTT  138 (303)
                          .+..+++      .++|+|||++.. +.-.-.-..|.++++|+|.|-.
T Consensus       106 ~i~~~~~~~~~------~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~  151 (355)
T PRK05597        106 RLTWSNALDEL------RDADVILDGSDNFDTRHLASWAAARLGIPHVWASI  151 (355)
T ss_pred             ecCHHHHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence                1233455      479999999844 4334455789999999998643

>PRK06046 alanine dehydrogenase; Validated

Probab=95.98  E-value=0.015  Score=55.58  Aligned_cols=90  Identities=14%  Similarity=0.134  Sum_probs=61.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCC--eeecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~g--v~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ..+|+|+|+ |.+|+.+++.+...++++.+.++|++.  ..+..++.. .+.++  +.+++|+++++      . +|+|+
T Consensus       129 ~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~l------~-aDiVv  198 (326)
T PRK06046        129 SKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTK--SSAEKFVERMSSVVGCDVTVAEDIEEAC------D-CDILV  198 (326)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCH--HHHHHHHHHHHhhcCceEEEeCCHHHHh------h-CCEEE
Confidence            368999998 999999999998888999999999753  122222210 01234  45678999887      3 89999


Q ss_pred             EcCCchhHHHHH-HHHHHcCCCeE-Ee
Q 022057          112 DFTDASTVYDNV-KQATAFGMRSV-VY  136 (303)
Q Consensus       112 DfT~p~a~~~~~-~~al~~g~~vV-ig  136 (303)
                      .+|+...  +.+ ...++.|.+|. ||
T Consensus       199 ~aTps~~--P~~~~~~l~~g~hV~~iG  223 (326)
T PRK06046        199 TTTPSRK--PVVKAEWIKEGTHINAIG  223 (326)
T ss_pred             EecCCCC--cEecHHHcCCCCEEEecC
Confidence            8875322  222 23457888875 55

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.98  E-value=0.036  Score=51.87  Aligned_cols=33  Identities=30%  Similarity=0.358  Sum_probs=26.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      +.||+|+|+ |.||..++..+.. .+++++ ++|++
T Consensus         4 ~~~V~vIG~-G~mG~~iA~~l~~-~G~~V~-~~d~~   36 (295)
T PLN02545          4 IKKVGVVGA-GQMGSGIAQLAAA-AGMDVW-LLDSD   36 (295)
T ss_pred             cCEEEEECC-CHHHHHHHHHHHh-cCCeEE-EEeCC
Confidence            358999998 9999999998874 578776 46753

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.97  E-value=0.082  Score=49.92  Aligned_cols=73  Identities=23%  Similarity=0.204  Sum_probs=45.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchh--------hhhcCCC---------CCCeeecCCHHH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIG--------MVCDMEQ---------PLEIPVMSDLTM   96 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~--------~~~g~~~---------~~gv~v~~dl~~   96 (303)
                      ++||+|+|+ |.||..++..+.. .+++++ ++|++.. ...+.        .+...+.         ...+....|+++
T Consensus         2 ~~~V~VIG~-G~mG~~iA~~la~-~G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~   78 (308)
T PRK06129          2 MGSVAIIGA-GLIGRAWAIVFAR-AGHEVR-LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLAD   78 (308)
T ss_pred             CcEEEEECc-cHHHHHHHHHHHH-CCCeeE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHH
Confidence            358999997 9999999998875 477766 4675420 00000        0111000         011356778888


Q ss_pred             HHhccccCCCccEEEEcCCc
Q 022057           97 VLGSISQSKARAVVIDFTDA  116 (303)
Q Consensus        97 ~l~~~~~~~~~DVvIDfT~p  116 (303)
                      ++      .++|+||.+.+.
T Consensus        79 a~------~~ad~Vi~avpe   92 (308)
T PRK06129         79 AV------ADADYVQESAPE   92 (308)
T ss_pred             hh------CCCCEEEECCcC
Confidence            87      479999977643

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=95.94  E-value=0.045  Score=52.22  Aligned_cols=120  Identities=13%  Similarity=0.146  Sum_probs=77.6

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccch--------hhhhcCCCCCCe--ee
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GEDI--------GMVCDMEQPLEI--PV   90 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~----------------g~d~--------~~~~g~~~~~gv--~v   90 (303)
                      -|.|+|| |.+|+.++..+. ..|++=+-++|.+..                |.+-        ..++-+ .+...  ..
T Consensus        76 yVVVVG~-GgVGSwv~nmL~-RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw-~eIdar~~l  152 (430)
T KOG2018|consen   76 YVVVVGA-GGVGSWVANMLL-RSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPW-CEIDARNML  152 (430)
T ss_pred             EEEEEec-CchhHHHHHHHH-HhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCcc-ceecHHHhh
Confidence            4899999 999999999887 578887888873211                1110        111111 01111  11


Q ss_pred             --cCCHHHHHhccccCCCccEEEEcC-CchhHHHHHHHHHHcCCCeEEeCCC----------------------CCHHHH
Q 022057           91 --MSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPH----------------------IQLETV  145 (303)
Q Consensus        91 --~~dl~~~l~~~~~~~~~DVvIDfT-~p~a~~~~~~~al~~g~~vVigTTG----------------------~~~e~~  145 (303)
                        .++-++++.     .+||.|||+- +-+.-.+.+.+|-.+|++|+..| |                      ++..-.
T Consensus       153 ~~~~s~edll~-----gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~-GaaaksDPTrv~v~Dis~t~~DPlsR~vR  226 (430)
T KOG2018|consen  153 WTSSSEEDLLS-----GNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISST-GAAAKSDPTRVNVADISETEEDPLSRSVR  226 (430)
T ss_pred             cCCCchhhhhc-----CCCCeEeEhhhhhhhhhHHHHHHHHcCCceEecc-CccccCCCceeehhhccccccCcHHHHHH
Confidence              235566664     6899999987 55667899999999999988654 2                      122234


Q ss_pred             HHHHHHhhhcCCeEEEcCCC
Q 022057          146 SALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       146 ~~L~~~a~~~~i~vv~a~N~  165 (303)
                      .+|+..--..|+|+++|.-.
T Consensus       227 rrLrk~GI~~GIpVVFS~Ek  246 (430)
T KOG2018|consen  227 RRLRKRGIEGGIPVVFSLEK  246 (430)
T ss_pred             HHHHHhccccCCceEEecCC
Confidence            45666666678999986543

>PRK06444 prephenate dehydrogenase; Provisional

Probab=95.94  E-value=0.023  Score=50.80  Aligned_cols=28  Identities=25%  Similarity=0.355  Sum_probs=23.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVA   64 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLv   64 (303)
                      |||+|+|++|+||+.+++.+. +.|+++.
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~-~~g~~v~   28 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILD-DNGLGVY   28 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHH-hCCCEEE
Confidence            589999999999999999876 4577754

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=95.92  E-value=0.027  Score=52.95  Aligned_cols=78  Identities=23%  Similarity=0.307  Sum_probs=54.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC-
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT-  114 (303)
                      |||.|.|++|.+|+.+.+.+.  ++.++++.-..+               .++.-.+.+.+++.+    .+||+||.+. 
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~---------------~Ditd~~~v~~~i~~----~~PDvVIn~AA   59 (281)
T COG1091           1 MKILITGANGQLGTELRRALP--GEFEVIATDRAE---------------LDITDPDAVLEVIRE----TRPDVVINAAA   59 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC--CCceEEeccCcc---------------ccccChHHHHHHHHh----hCCCEEEECcc
Confidence            459999999999999999876  778888743221               222333456677764    6899999863 


Q ss_pred             ---------Cch--------hHHHHHHHHHHcCCCeE
Q 022057          115 ---------DAS--------TVYDNVKQATAFGMRSV  134 (303)
Q Consensus       115 ---------~p~--------a~~~~~~~al~~g~~vV  134 (303)
                               .|+        .....++.|.+.|.++|
T Consensus        60 yt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lV   96 (281)
T COG1091          60 YTAVDKAESEPELAFAVNATGAENLARAAAEVGARLV   96 (281)
T ss_pred             ccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEE
Confidence                     222        23446678888888877

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.91  E-value=0.14  Score=51.51  Aligned_cols=133  Identities=23%  Similarity=0.203  Sum_probs=74.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecC--CHHHHHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      .||.|+|. |+.|...++.+. ..+.++++ .|...  .....+    .+.|+.+..  ...+.+      .++|+||..
T Consensus        13 ~~v~V~G~-G~sG~aa~~~L~-~~G~~v~~-~D~~~--~~~~~l----~~~g~~~~~~~~~~~~l------~~~D~VV~S   77 (488)
T PRK03369         13 APVLVAGA-GVTGRAVLAALT-RFGARPTV-CDDDP--DALRPH----AERGVATVSTSDAVQQI------ADYALVVTS   77 (488)
T ss_pred             CeEEEEcC-CHHHHHHHHHHH-HCCCEEEE-EcCCH--HHHHHH----HhCCCEEEcCcchHhHh------hcCCEEEEC
Confidence            58999998 999999998655 67788776 77432  111111    134554432  233444      368999876


Q ss_pred             CC-chhHHHHHHHHHHcCCCeE---------------------EeCCCCCHH--HHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          114 TD-ASTVYDNVKQATAFGMRSV---------------------VYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       114 T~-p~a~~~~~~~al~~g~~vV---------------------igTTG~~~e--~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      +- |.. .+.+..|.+.|+|++                     ||-||-+-.  -..-|..+-++.+.+.....|  +|.
T Consensus        78 pGi~~~-~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gn--iG~  154 (488)
T PRK03369         78 PGFRPT-APVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGN--IGS  154 (488)
T ss_pred             CCCCCC-CHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCC--Cch
Confidence            52 332 344555555444433                     444543211  122344455556666676777  666


Q ss_pred             HHHHHHHHHhccCCCcEEEEEc
Q 022057          170 ILLQQAAISASFHYKNVEIVES  191 (303)
Q Consensus       170 ~ll~~~a~~~~~~~~dieIiE~  191 (303)
                      .++..+    . ...|+-++|.
T Consensus       155 p~~~~~----~-~~~~~~VlE~  171 (488)
T PRK03369        155 PVLDVL----D-EPAELLAVEL  171 (488)
T ss_pred             HHHHhc----c-CCCCEEEEEC
Confidence            654422    2 2356777886

>PRK06545 prephenate dehydrogenase; Validated

Probab=95.91  E-value=0.13  Score=49.84  Aligned_cols=102  Identities=14%  Similarity=0.152  Sum_probs=59.4

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee--ecCCHHHHHhccccCCCccEEEEcC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ||+|+|. |.||..++..+.+ .++++. +++++....+.....    ..++.  ..+++++++      .++|+||-++
T Consensus         2 ~I~iIG~-GliG~siA~~L~~-~G~~v~-i~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~------~~aDlVilav   68 (359)
T PRK06545          2 TVLIVGL-GLIGGSLALAIKA-AGPDVF-IIGYDPSAAQLARAL----GFGVIDELAADLQRAA------AEADLIVLAV   68 (359)
T ss_pred             eEEEEEe-CHHHHHHHHHHHh-cCCCeE-EEEeCCCHHHHHHHh----cCCCCcccccCHHHHh------cCCCEEEEeC
Confidence            6999997 9999999999875 344443 344322111111111    12221  245677776      4799999899


Q ss_pred             CchhHHHHHHHHHH--cCC-CeEEeCCCCCHHHHHHHHHH
Q 022057          115 DASTVYDNVKQATA--FGM-RSVVYVPHIQLETVSALSAF  151 (303)
Q Consensus       115 ~p~a~~~~~~~al~--~g~-~vVigTTG~~~e~~~~L~~~  151 (303)
                      +|....+.+.....  ... .+|+-.++...+..+.+.+.
T Consensus        69 P~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~  108 (359)
T PRK06545         69 PVDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEAL  108 (359)
T ss_pred             CHHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence            88887777776654  222 34433334444444455544

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.89  E-value=0.047  Score=53.62  Aligned_cols=96  Identities=19%  Similarity=0.304  Sum_probs=60.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCC-------cchh----h-----hhcCCCCCCeeec--
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVG-------EDIG----M-----VCDMEQPLEIPVM--   91 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g-------~d~~----~-----~~g~~~~~gv~v~--   91 (303)
                      ..||.|+|+ |.+|..+++.+. ..++.=+.++|.+     ..+       .|.+    +     +..+.....+..+  
T Consensus        42 ~~~VlviG~-GGlGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  119 (392)
T PRK07878         42 NARVLVIGA-GGLGSPTLLYLA-AAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF  119 (392)
T ss_pred             cCCEEEECC-CHHHHHHHHHHH-HcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence            468999999 999999999887 4566656677732     111       1111    1     1111111222211  


Q ss_pred             ----CCHHHHHhccccCCCccEEEEcC-CchhHHHHHHHHHHcCCCeEEeCC
Q 022057           92 ----SDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVvIDfT-~p~a~~~~~~~al~~g~~vVigTT  138 (303)
                          .+..+++      .++|+|||++ +++.-...-+.|.++++|+|.|.+
T Consensus       120 ~i~~~~~~~~~------~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~  165 (392)
T PRK07878        120 RLDPSNAVELF------SQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSI  165 (392)
T ss_pred             cCChhHHHHHH------hcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence                1234455      4799999998 454445566889999999998755

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.88  E-value=0.055  Score=52.71  Aligned_cols=34  Identities=26%  Similarity=0.519  Sum_probs=26.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      ..||.|+|+ |..|..+++.+. ..++.=+-++|.+
T Consensus       135 ~~~VlvvG~-GG~Gs~ia~~La-~~Gvg~i~lvD~d  168 (376)
T PRK08762        135 EARVLLIGA-GGLGSPAALYLA-AAGVGTLGIVDHD  168 (376)
T ss_pred             cCcEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCC
Confidence            468999998 999999999887 4566555567753

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.88  E-value=0.055  Score=52.85  Aligned_cols=96  Identities=20%  Similarity=0.308  Sum_probs=59.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCc-------chh----h-----hhcCCCCCCeeec--
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGE-------DIG----M-----VCDMEQPLEIPVM--   91 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~-------d~~----~-----~~g~~~~~gv~v~--   91 (303)
                      ..||.|+|+ |.+|..+++.+.. .++.=+.++|.+     ..++       |++    +     +..+.....+..+  
T Consensus        41 ~~~VliiG~-GglG~~v~~~La~-~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~  118 (370)
T PRK05600         41 NARVLVIGA-GGLGCPAMQSLAS-AGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE  118 (370)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence            468999998 9999999999884 565445567632     1111       110    0     1111111222222  


Q ss_pred             ----CCHHHHHhccccCCCccEEEEcCC-chhHHHHHHHHHHcCCCeEEeCC
Q 022057           92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVvIDfT~-p~a~~~~~~~al~~g~~vVigTT  138 (303)
                          .+.++++      .++|+|||++. .++-.-.-..|.++++|+|.+..
T Consensus       119 ~i~~~~~~~~~------~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~  164 (370)
T PRK05600        119 RLTAENAVELL------NGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTV  164 (370)
T ss_pred             ecCHHHHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence                2344566      47999999985 44445556789999999998754

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.85  E-value=0.11  Score=51.26  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=27.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      ++||+|+|. |.||..++..+.+ .++++++ +|.+
T Consensus         3 ~~kI~VIGl-G~~G~~~A~~La~-~G~~V~~-~D~~   35 (415)
T PRK11064          3 FETISVIGL-GYIGLPTAAAFAS-RQKQVIG-VDIN   35 (415)
T ss_pred             ccEEEEECc-chhhHHHHHHHHh-CCCEEEE-EeCC
Confidence            479999997 9999999998874 5788775 6653

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=95.85  E-value=0.034  Score=55.63  Aligned_cols=34  Identities=18%  Similarity=0.310  Sum_probs=30.0

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhc----CCcEEEEEEe
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAID   68 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~----~~~eLvg~vd   68 (303)
                      .+.||+|+|+ ||+||.+++.+.+.    ++++|+++.+
T Consensus       126 ~~~~V~InGF-GRIGR~v~R~~~~~~~~~~~l~lvAIn~  163 (477)
T PRK08289        126 EPRDVVLYGF-GRIGRLLARLLIEKTGGGNGLRLRAIVV  163 (477)
T ss_pred             CCceEEEECC-CHHHHHHHHHHHhccCCCCCeEEEEEec
Confidence            3689999998 99999999998766    5899999975

>PLN03139 formate dehydrogenase; Provisional

Probab=95.84  E-value=0.058  Score=53.03  Aligned_cols=65  Identities=22%  Similarity=0.105  Sum_probs=46.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|+ |+||+.+++.+. .-++++.+ +|+..  .+.. ..   ...++....++++++.      .+|+|+-..
T Consensus       199 gktVGIVG~-G~IG~~vA~~L~-afG~~V~~-~d~~~--~~~~-~~---~~~g~~~~~~l~ell~------~sDvV~l~l  263 (386)
T PLN03139        199 GKTVGTVGA-GRIGRLLLQRLK-PFNCNLLY-HDRLK--MDPE-LE---KETGAKFEEDLDAMLP------KCDVVVINT  263 (386)
T ss_pred             CCEEEEEee-cHHHHHHHHHHH-HCCCEEEE-ECCCC--cchh-hH---hhcCceecCCHHHHHh------hCCEEEEeC
Confidence            368999997 999999999887 47899875 67642  1111 11   1345555678999984      799988654

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.81  E-value=0.017  Score=48.16  Aligned_cols=71  Identities=21%  Similarity=0.260  Sum_probs=45.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC--CCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ--PLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~--~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      .-|+.|+|+ |+||+.++..+... +++=+-+++++.  ..+.+++....  ...+.-++++.+.+.      ++|+||.
T Consensus        12 ~~~vlviGa-Gg~ar~v~~~L~~~-g~~~i~i~nRt~--~ra~~l~~~~~~~~~~~~~~~~~~~~~~------~~DivI~   81 (135)
T PF01488_consen   12 GKRVLVIGA-GGAARAVAAALAAL-GAKEITIVNRTP--ERAEALAEEFGGVNIEAIPLEDLEEALQ------EADIVIN   81 (135)
T ss_dssp             TSEEEEESS-SHHHHHHHHHHHHT-TSSEEEEEESSH--HHHHHHHHHHTGCSEEEEEGGGHCHHHH------TESEEEE
T ss_pred             CCEEEEECC-HHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHHHHHHcCccccceeeHHHHHHHHh------hCCeEEE
Confidence            368999998 99999999998865 766556677652  22333331101  122333667777763      7999998


Q ss_pred             cCC
Q 022057          113 FTD  115 (303)
Q Consensus       113 fT~  115 (303)
                      +|+
T Consensus        82 aT~   84 (135)
T PF01488_consen   82 ATP   84 (135)
T ss_dssp             -SS
T ss_pred             ecC
Confidence            874

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PLN02778 3,5-epimerase/4-reductase

Probab=95.76  E-value=0.071  Score=50.02  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=29.9

Q ss_pred             ecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEE
Q 022057           28 STNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAG   65 (303)
Q Consensus        28 ~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg   65 (303)
                      +..|..+.|||.|.|++|-+|+.+++.+.+ .+.+++.
T Consensus         2 ~~~~~~~~~kiLVtG~tGfiG~~l~~~L~~-~g~~V~~   38 (298)
T PLN02778          2 NGTAGSATLKFLIYGKTGWIGGLLGKLCQE-QGIDFHY   38 (298)
T ss_pred             CCCCCCCCCeEEEECCCCHHHHHHHHHHHh-CCCEEEE
Confidence            345666778999999999999999998875 4667753

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=95.76  E-value=0.056  Score=49.99  Aligned_cols=124  Identities=19%  Similarity=0.238  Sum_probs=76.3

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----c---CCHHHHHhccccCCC
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----M---SDLTMVLGSISQSKA  106 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~---~dl~~~l~~~~~~~~  106 (303)
                      ||++|.|+|.| .=|+.+++.+.+. +..++.-+..+. |. .       ...++++    +   .++.+.+.+    .+
T Consensus         1 ~~~~IlvlgGT-~egr~la~~L~~~-g~~v~~Svat~~-g~-~-------~~~~~~v~~G~l~~~~~l~~~l~~----~~   65 (248)
T PRK08057          1 MMPRILLLGGT-SEARALARALAAA-GVDIVLSLAGRT-GG-P-------ADLPGPVRVGGFGGAEGLAAYLRE----EG   65 (248)
T ss_pred             CCceEEEEech-HHHHHHHHHHHhC-CCeEEEEEccCC-CC-c-------ccCCceEEECCCCCHHHHHHHHHH----CC
Confidence            67899999985 7799999988754 676665444321 22 1       1122222    2   345556653    78


Q ss_pred             ccEEEEcCCchhH---HHHHHHHHHcCCCeEE-eCCCCC---------HHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHH
Q 022057          107 RAVVIDFTDASTV---YDNVKQATAFGMRSVV-YVPHIQ---------LETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (303)
Q Consensus       107 ~DVvIDfT~p~a~---~~~~~~al~~g~~vVi-gTTG~~---------~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~  173 (303)
                      +++|||.|||-+.   ......|.+.|+|.+= .=+.|.         -+..++..++..+. -.++.    ++|++-|.
T Consensus        66 i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l~~~-~~vll----ttGsk~l~  140 (248)
T PRK08057         66 IDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEALAPF-RRVLL----TTGRQPLA  140 (248)
T ss_pred             CCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHhhcc-CCEEE----ecCcchHH
Confidence            9999999999655   5566788999999882 222221         01233344444433 35565    78887776


Q ss_pred             HHHH
Q 022057          174 QAAI  177 (303)
Q Consensus       174 ~~a~  177 (303)
                      .+..
T Consensus       141 ~f~~  144 (248)
T PRK08057        141 HFAA  144 (248)
T ss_pred             HHhh
Confidence            6654

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.75  E-value=0.056  Score=44.66  Aligned_cols=120  Identities=14%  Similarity=0.138  Sum_probs=58.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-hcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-CDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~~-~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      .||+|+|+ |.+|..+++.+.. .++.=+-++|.+.. ..++... .......|-+-..-+.+.+.+    ..|++=|..
T Consensus         3 ~~v~iiG~-G~vGs~va~~L~~-~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~----~np~~~v~~   76 (135)
T PF00899_consen    3 KRVLIIGA-GGVGSEVAKNLAR-SGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQE----INPDVEVEA   76 (135)
T ss_dssp             -EEEEEST-SHHHHHHHHHHHH-HTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHH----HSTTSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHH-hCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHH----hcCceeeee
Confidence            58999998 9999999999885 46655567885321 0111110 000001111111122222322    233333332


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                      -+.....++....+ .+.++|+.++.- .+....|.++|++.++|++.+.
T Consensus        77 ~~~~~~~~~~~~~~-~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~  124 (135)
T PF00899_consen   77 IPEKIDEENIEELL-KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAG  124 (135)
T ss_dssp             EESHCSHHHHHHHH-HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred             eecccccccccccc-cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEE
Confidence            21111223333333 356777766543 2334567777777777776654

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PLN00016 RNA-binding protein; Provisional

Probab=95.74  E-value=0.062  Score=51.90  Aligned_cols=97  Identities=19%  Similarity=0.156  Sum_probs=59.1

Q ss_pred             CCCceeEEEE----cCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcch-----hhhhcCCCCCCee-ecCCHHH---HH
Q 022057           32 PQSNIKVIIN----GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI-----GMVCDMEQPLEIP-VMSDLTM---VL   98 (303)
Q Consensus        32 ~~~~ikV~V~----G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~-----~~~~g~~~~~gv~-v~~dl~~---~l   98 (303)
                      .-|++||.|+    |++|.+|+.+++.+.+ .+.++.++..........     ..+..+ ...++. +..|+.+   ++
T Consensus        49 ~~~~~~VLVt~~~~GatG~iG~~lv~~L~~-~G~~V~~l~R~~~~~~~~~~~~~~~~~~l-~~~~v~~v~~D~~d~~~~~  126 (378)
T PLN00016         49 AVEKKKVLIVNTNSGGHAFIGFYLAKELVK-AGHEVTLFTRGKEPSQKMKKEPFSRFSEL-SSAGVKTVWGDPADVKSKV  126 (378)
T ss_pred             ccccceEEEEeccCCCceeEhHHHHHHHHH-CCCEEEEEecCCcchhhhccCchhhhhHh-hhcCceEEEecHHHHHhhh
Confidence            3446899999    9999999999999885 578998866432110000     000000 012333 2345544   33


Q ss_pred             hccccCCCccEEEEcCC--chhHHHHHHHHHHcCC-CeE
Q 022057           99 GSISQSKARAVVIDFTD--ASTVYDNVKQATAFGM-RSV  134 (303)
Q Consensus        99 ~~~~~~~~~DVvIDfT~--p~a~~~~~~~al~~g~-~vV  134 (303)
                      .    ...+|+||++..  .+.....++.|.+.|+ ++|
T Consensus       127 ~----~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V  161 (378)
T PLN00016        127 A----GAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFL  161 (378)
T ss_pred             c----cCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence            2    247999999864  3445667778888887 455

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=95.73  E-value=0.13  Score=47.21  Aligned_cols=120  Identities=13%  Similarity=0.104  Sum_probs=62.4

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCC---HHHHHhccccCCC-ccEEE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSD---LTMVLGSISQSKA-RAVVI  111 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~d---l~~~l~~~~~~~~-~DVvI  111 (303)
                      +|.|.|+||.+|+.+++.+.+ .++++.+....... ..   ..+.   ..+.. +.|   +.++++....-.. +|.++
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~-~g~~V~~~~R~~~~-~~---~~~~---~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~   72 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQA-ASVPFLVASRSSSS-SA---GPNE---KHVKFDWLDEDTWDNPFSSDDGMEPEISAVY   72 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHh-CCCcEEEEeCCCcc-cc---CCCC---ccccccCCCHHHHHHHHhcccCcCCceeEEE
Confidence            589999999999999998875 57888776543210 00   0010   01111 233   3344410000023 78887


Q ss_pred             EcCCc-----hhHHHHHHHHHHcCCCeEEeCC--CC--CHHHHHHHHHHhhhc-CCeEE-EcCC
Q 022057          112 DFTDA-----STVYDNVKQATAFGMRSVVYVP--HI--QLETVSALSAFCDKA-SMGCL-IAPT  164 (303)
Q Consensus       112 DfT~p-----~a~~~~~~~al~~g~~vVigTT--G~--~~e~~~~L~~~a~~~-~i~vv-~a~N  164 (303)
                      ..+.+     +.....+..|.++|+.-|+-++  +.  .......++++.++. +++.. +-|+
T Consensus        73 ~~~~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~~~~~~~~~~l~~~~gi~~tilRp~  136 (285)
T TIGR03649        73 LVAPPIPDLAPPMIKFIDFARSKGVRRFVLLSASIIEKGGPAMGQVHAHLDSLGGVEYTVLRPT  136 (285)
T ss_pred             EeCCCCCChhHHHHHHHHHHHHcCCCEEEEeeccccCCCCchHHHHHHHHHhccCCCEEEEecc
Confidence            55532     3445677888889975443322  21  111223345555553 66554 3343

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK07574 formate dehydrogenase; Provisional

Probab=95.71  E-value=0.091  Score=51.62  Aligned_cols=64  Identities=22%  Similarity=0.200  Sum_probs=45.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ++|+|+|+ |+||+.+++.+. .-++++.+ +|+...  + .+..   ...++..+.++++++.      .+|+|+-..
T Consensus       193 ktVGIvG~-G~IG~~vA~~l~-~fG~~V~~-~dr~~~--~-~~~~---~~~g~~~~~~l~ell~------~aDvV~l~l  256 (385)
T PRK07574        193 MTVGIVGA-GRIGLAVLRRLK-PFDVKLHY-TDRHRL--P-EEVE---QELGLTYHVSFDSLVS------VCDVVTIHC  256 (385)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCEEEE-ECCCCC--c-hhhH---hhcCceecCCHHHHhh------cCCEEEEcC
Confidence            68999997 999999999877 46888875 665321  1 1111   1345555678999984      799998655

>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional

Probab=95.67  E-value=0.13  Score=51.69  Aligned_cols=86  Identities=15%  Similarity=0.097  Sum_probs=59.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHH---HHhccccCCCccE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAV  109 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~---~l~~~~~~~~~DV  109 (303)
                      .-|+.|+|+ |..|+.+++.+.+++  +++++|.+|.+..           ...++|+..+.++   ++..    .++|-
T Consensus       143 ~rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~-----------~g~~VpvlG~~~dL~~~v~~----~~Ide  206 (463)
T PRK10124        143 KRMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKP-----------GGVSNDWAGNLQQLVEDAKA----GKIHN  206 (463)
T ss_pred             CCcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCcc-----------ccCCCCcCCCHHHHHHHHHh----CCCCE
Confidence            357999998 999999999998776  6899999986421           0123445555444   4442    57887


Q ss_pred             EEEcC---CchhHHHHHHHHHHcCCCeEEe
Q 022057          110 VIDFT---DASTVYDNVKQATAFGMRSVVY  136 (303)
Q Consensus       110 vIDfT---~p~a~~~~~~~al~~g~~vVig  136 (303)
                      ||-..   .++...+.+..|.+.++++.+-
T Consensus       207 ViIAip~~~~~~l~ell~~~~~~~v~V~iv  236 (463)
T PRK10124        207 VYIAMSMCDGARVKKLVRQLADTTCSVLLI  236 (463)
T ss_pred             EEEeCCCcchHHHHHHHHHHHHcCCeEEEe
Confidence            76443   2344567778888999987764

>KOG2742 consensus Predicted oxidoreductase [General function prediction only]

Probab=95.67  E-value=0.0046  Score=59.21  Aligned_cols=109  Identities=15%  Similarity=0.107  Sum_probs=79.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      +. |+|.|. |-..+..+-.+.+.+ +++-+++.+.+  ..+.+.+   ....++. ++++++.+..    .+.|.+...
T Consensus         3 Pg-v~v~GT-g~~arv~iP~l~e~~-f~v~A~w~Rt~--~ea~a~a---a~~~v~~~t~~~deiLl~----~~vdlv~i~   70 (367)
T KOG2742|consen    3 PG-VGVFGT-GIFARVLIPLLKEEG-FEVKAIWGRTK--TEAKAKA---AEMNVRKYTSRLDEILLD----QDVDLVCIS   70 (367)
T ss_pred             Cc-eeEecc-ChhHhhhhhhhhhcc-chHhhhhchhh--hHHHHhh---hccchhhccccchhhhcc----CCcceeEec
Confidence            35 999995 999999988777665 99998887632  1112222   2344544 4588888753    567766555


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhc
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA  155 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~  155 (303)
                      -+|..+.+.+..++..|+|||+.++.-+.++.+.+.++++..
T Consensus        71 lpp~~~~eI~~kal~~Gk~Vvcek~a~~~d~~k~~~~~~~s~  112 (367)
T KOG2742|consen   71 LPPPLHAEIVVKALGIGKHVVCEKPATNLDAAKMVVALAYSP  112 (367)
T ss_pred             cCCccceeeeeccccCCceEEeccCCcchhhhhhHHHHhhch
Confidence            678888999999999999999999986667777888877663

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=95.60  E-value=0.072  Score=50.81  Aligned_cols=32  Identities=19%  Similarity=0.153  Sum_probs=27.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      ++||.|.|++|-+|+.+++.+.+. +.+++++.
T Consensus        15 ~~~vlVtGatGfiG~~lv~~L~~~-g~~V~~~d   46 (348)
T PRK15181         15 PKRWLITGVAGFIGSGLLEELLFL-NQTVIGLD   46 (348)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHC-CCEEEEEe
Confidence            579999999999999999999864 67887653

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.58  E-value=0.012  Score=51.44  Aligned_cols=30  Identities=37%  Similarity=0.498  Sum_probs=23.5

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ||+|+|+ |.||+.|+..++.. +++++- +|.
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~-G~~V~l-~d~   30 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARA-GYEVTL-YDR   30 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHT-TSEEEE-E-S
T ss_pred             CEEEEcC-CHHHHHHHHHHHhC-CCcEEE-EEC
Confidence            7999998 99999999988754 888774 664

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.58  E-value=0.12  Score=47.99  Aligned_cols=95  Identities=14%  Similarity=0.149  Sum_probs=54.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC---CCCC--eeecCCHHHHHhccccCCCcc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME---QPLE--IPVMSDLTMVLGSISQSKARA  108 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~---~~~g--v~v~~dl~~~l~~~~~~~~~D  108 (303)
                      |||+|+|+ |.||..++..+.+ .+.++.. ++++.  .....+.  |..   ....  +...++.+++       .++|
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~-~g~~V~~-~~r~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~d   68 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQ-AGHDVTL-VARRG--AHLDALNENGLRLEDGEITVPVLAADDPAEL-------GPQD   68 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCeEEE-EECCh--HHHHHHHHcCCcccCCceeecccCCCChhHc-------CCCC
Confidence            58999998 9999999998875 4677654 34321  1111111  110   0000  1223445443       3789


Q ss_pred             EEEEcCCchhHHHHHHHHHH---cCCCeEEeCCCCCH
Q 022057          109 VVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL  142 (303)
Q Consensus       109 VvIDfT~p~a~~~~~~~al~---~g~~vVigTTG~~~  142 (303)
                      ++|-++.+..+.+.+.....   .+..+|+-..|+..
T Consensus        69 ~vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~  105 (304)
T PRK06522         69 LVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGH  105 (304)
T ss_pred             EEEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCc
Confidence            99988876666665554443   34556665668763

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=95.52  E-value=0.028  Score=53.81  Aligned_cols=92  Identities=11%  Similarity=0.031  Sum_probs=62.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ..+++|+|+ |.||+.+++.+......+-+.++|++.  ..+..++.....++  +.+++|.++++      .++||||-
T Consensus       128 ~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~--~~~~~~~~~~~~~g~~v~~~~~~~eav------~~aDiVit  198 (325)
T TIGR02371       128 SSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTP--STREKFALRASDYEVPVRAATDPREAV------EGCDILVT  198 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHhhCCcEEEeCCHHHHh------ccCCEEEE
Confidence            368999998 999999999988877888888998753  22222221101234  55678999998      47999997


Q ss_pred             cCCchhHHHHH-HHHHHcCCCeE-EeC
Q 022057          113 FTDASTVYDNV-KQATAFGMRSV-VYV  137 (303)
Q Consensus       113 fT~p~a~~~~~-~~al~~g~~vV-igT  137 (303)
                      +|+. . .+++ ...++.|.++. ||+
T Consensus       199 aT~s-~-~P~~~~~~l~~g~~v~~vGs  223 (325)
T TIGR02371       199 TTPS-R-KPVVKADWVSEGTHINAIGA  223 (325)
T ss_pred             ecCC-C-CcEecHHHcCCCCEEEecCC
Confidence            7732 1 1222 33568888875 553

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=95.49  E-value=0.098  Score=50.23  Aligned_cols=87  Identities=17%  Similarity=0.176  Sum_probs=56.3

Q ss_pred             eecccccccccceEEEee---cCC--CCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC
Q 022057           11 RMHHISQNVKAKRFISCS---TNP--PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP   85 (303)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~---~~~--~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~   85 (303)
                      |++...|.+|.+.+-...   ..+  .-.-.++||+|. ||+|+++++.+. -=+|++.. .|+... +...      ..
T Consensus       117 ~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~-GrIG~avA~r~~-~Fgm~v~y-~~~~~~-~~~~------~~  186 (324)
T COG1052         117 RIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGL-GRIGQAVARRLK-GFGMKVLY-YDRSPN-PEAE------KE  186 (324)
T ss_pred             chHHHHHHHhcCcccccCCcccccccCCCCCEEEEECC-CHHHHHHHHHHh-cCCCEEEE-ECCCCC-hHHH------hh
Confidence            556677788887766553   011  111368999996 999999999877 66888875 554321 1111      12


Q ss_pred             CCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           86 LEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        86 ~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .+...++ +++++.      ++|+++...
T Consensus       187 ~~~~y~~-l~ell~------~sDii~l~~  208 (324)
T COG1052         187 LGARYVD-LDELLA------ESDIISLHC  208 (324)
T ss_pred             cCceecc-HHHHHH------hCCEEEEeC
Confidence            3344444 999995      799988655

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.45  E-value=0.13  Score=47.25  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=26.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ..||.|+|+ |..|..+++.+.. .++.=..++|.
T Consensus        32 ~~~VliiG~-GglGs~va~~La~-~Gvg~i~lvD~   64 (245)
T PRK05690         32 AARVLVVGL-GGLGCAASQYLAA-AGVGTLTLVDF   64 (245)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcC
Confidence            469999998 9999999999874 56655566774

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.43  E-value=0.059  Score=50.38  Aligned_cols=32  Identities=16%  Similarity=0.325  Sum_probs=25.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      -||+|+|+ |.||+.++..+.. .+++++ ++|.+
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~-~G~~V~-l~d~~   35 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFAR-TGYDVT-IVDVS   35 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHh-cCCeEE-EEeCC
Confidence            47999998 9999999998874 577766 46753

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.43  E-value=0.095  Score=50.60  Aligned_cols=138  Identities=20%  Similarity=0.085  Sum_probs=78.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--c---CCHHHHHhccccCCCccEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--M---SDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~---~dl~~~l~~~~~~~~~DVv  110 (303)
                      -+|+|+|+ |.+|...++.+.. -+.+++++-.++.    -.+++   .++|...  .   .+.-+.+.     ..+|++
T Consensus       168 ~~V~I~G~-GGlGh~avQ~Aka-~ga~Via~~~~~~----K~e~a---~~lGAd~~i~~~~~~~~~~~~-----~~~d~i  233 (339)
T COG1064         168 KWVAVVGA-GGLGHMAVQYAKA-MGAEVIAITRSEE----KLELA---KKLGADHVINSSDSDALEAVK-----EIADAI  233 (339)
T ss_pred             CEEEEECC-cHHHHHHHHHHHH-cCCeEEEEeCChH----HHHHH---HHhCCcEEEEcCCchhhHHhH-----hhCcEE
Confidence            47999998 9999999987664 4699987543321    11222   1233221  1   12223332     239999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHH-hhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcEEEE
Q 022057          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF-CDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIV  189 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~-a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIi  189 (303)
                      ||+..+....+.++.....|.-+++|-++..+...-....+ .++  +.+.=  .+.-+.+-++++.+.+++..-..+|.
T Consensus       234 i~tv~~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~--~~i~G--S~~g~~~d~~e~l~f~~~g~Ikp~i~  309 (339)
T COG1064         234 IDTVGPATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKE--ISIVG--SLVGTRADLEEALDFAAEGKIKPEIL  309 (339)
T ss_pred             EECCChhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcC--eEEEE--EecCCHHHHHHHHHHHHhCCceeeEE
Confidence            99998666677777777788888888875222110112222 233  44443  33334666777776666544333443


Q ss_pred             Ec
Q 022057          190 ES  191 (303)
Q Consensus       190 E~  191 (303)
                      |.
T Consensus       310 e~  311 (339)
T COG1064         310 ET  311 (339)
T ss_pred             ee
Confidence            33

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=95.41  E-value=0.13  Score=47.68  Aligned_cols=119  Identities=16%  Similarity=0.128  Sum_probs=76.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhh---hcCCCC-----------C-CeeecCCH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMV---CDMEQP-----------L-EIPVMSDL   94 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~---~g~~~~-----------~-gv~v~~dl   94 (303)
                      ..||+|.|+ |++|+..++.+. +.+..++++.|+     ++.|-|..++   ......           + +... -+.
T Consensus        38 g~~vaIqGf-GnVG~~~a~~L~-e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~-~~~  114 (254)
T cd05313          38 GKRVAISGS-GNVAQYAAEKLL-ELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKY-FEG  114 (254)
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEE-eCC
Confidence            479999998 999999999887 578999999994     2345554433   100000           0 1221 244


Q ss_pred             HHHHhccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057           95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI  167 (303)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G-~~~e~~~~L~~~a~~~~i~vv~a~N~Si  167 (303)
                      ++++.     .++||+|=+...... .+++....+++..+|+|-. + ++++ ..+   .-+++  .+++.|-+..
T Consensus       115 ~~~~~-----~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~-a~~---~L~~r--GI~vvPD~la  179 (254)
T cd05313         115 KKPWE-----VPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAE-AIE---VFRQA--GVLFAPGKAA  179 (254)
T ss_pred             cchhc-----CCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCHH-HHH---HHHHC--CcEEECchhh
Confidence            56665     589999977654443 6777777778999999976 3 4553 222   22343  4566677654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=95.37  E-value=0.21  Score=49.07  Aligned_cols=30  Identities=23%  Similarity=0.434  Sum_probs=24.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      |||+|+|. |.||..++..++ . ++++++ +|.
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA-~-G~~Vig-vD~   30 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIA-Q-NHEVVA-LDI   30 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-h-CCcEEE-EEC
Confidence            48999997 999999996655 3 788775 664

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.35  E-value=0.17  Score=48.77  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=27.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      ..||.|+|+ |.+|..+++.+.. .++.=+.++|.+
T Consensus        24 ~~~VlVvG~-GglGs~va~~La~-aGvg~i~lvD~D   57 (339)
T PRK07688         24 EKHVLIIGA-GALGTANAEMLVR-AGVGKVTIVDRD   57 (339)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence            468999999 9999999998874 577556678853

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.34  E-value=0.11  Score=46.11  Aligned_cols=34  Identities=15%  Similarity=0.348  Sum_probs=28.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      ..||.|+|+ |.+|..+++.+. ..++.=+-++|.+
T Consensus        21 ~s~VlIiG~-gglG~evak~La-~~GVg~i~lvD~d   54 (197)
T cd01492          21 SARILLIGL-KGLGAEIAKNLV-LSGIGSLTILDDR   54 (197)
T ss_pred             hCcEEEEcC-CHHHHHHHHHHH-HcCCCEEEEEECC
Confidence            368999998 899999999887 5788777788854

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Probab=95.32  E-value=0.19  Score=49.28  Aligned_cols=99  Identities=14%  Similarity=0.116  Sum_probs=60.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCCC---cc----------------hhhhhcCCC--CCCeeecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---ED----------------IGMVCDMEQ--PLEIPVMS   92 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g---~d----------------~~~~~g~~~--~~gv~v~~   92 (303)
                      |.||+|.|+||-+|+...+.+.+.|+ +++++........   +.                ..++.....  ..++.++.
T Consensus         1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~   80 (389)
T TIGR00243         1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLV   80 (389)
T ss_pred             CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEE
Confidence            46899999999999999998887765 9999987532100   00                000000000  00133332


Q ss_pred             C---HHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057           93 D---LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (303)
Q Consensus        93 d---l~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT  137 (303)
                      .   +.++.+    ..++|+|+-...--+...-...|+++|+.+-...
T Consensus        81 G~~~l~~l~~----~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLAN  124 (389)
T TIGR00243        81 GEEGICEMAA----LEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALAN  124 (389)
T ss_pred             CHHHHHHHHc----CCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEec
Confidence            2   333332    2467988877776667777778889998876653

1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.21  E-value=0.14  Score=46.81  Aligned_cols=33  Identities=27%  Similarity=0.322  Sum_probs=25.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ..||.|+|+ |.+|..+++.+.. .++.=.-++|.
T Consensus        11 ~~~VlVvG~-GGvGs~va~~Lar-~GVg~i~LvD~   43 (231)
T cd00755          11 NAHVAVVGL-GGVGSWAAEALAR-SGVGKLTLIDF   43 (231)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHH-cCCCEEEEECC
Confidence            468999998 9999999999874 56544445664

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=95.21  E-value=0.097  Score=47.87  Aligned_cols=59  Identities=22%  Similarity=0.343  Sum_probs=40.0

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      ||.|.|++|.+|+.+++.+.+ .+.+++++. +..              .++.-.++++++++.    .++|+||++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~-~g~~v~~~~-r~~--------------~d~~~~~~~~~~~~~----~~~d~vi~~a~   59 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSP-EGRVVVALT-SSQ--------------LDLTDPEALERLLRA----IRPDAVVNTAA   59 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHh-cCCEEEEeC-Ccc--------------cCCCCHHHHHHHHHh----CCCCEEEECCc
Confidence            689999999999999999885 578877643 321              111112345556642    46799998764

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.21  E-value=0.092  Score=52.23  Aligned_cols=102  Identities=13%  Similarity=0.076  Sum_probs=57.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|+ |.+|+.+++.+.. -+++++ ++|.+..  ...+..    ..|..+ .++++++      ..+|++|++|
T Consensus       212 Gk~VlViG~-G~IG~~vA~~lr~-~Ga~Vi-V~d~dp~--ra~~A~----~~G~~v-~~l~eal------~~aDVVI~aT  275 (425)
T PRK05476        212 GKVVVVAGY-GDVGKGCAQRLRG-LGARVI-VTEVDPI--CALQAA----MDGFRV-MTMEEAA------ELGDIFVTAT  275 (425)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCEEE-EEcCCch--hhHHHH----hcCCEe-cCHHHHH------hCCCEEEECC
Confidence            468999998 9999999998774 577754 4554321  111111    224443 3577777      4799999998


Q ss_pred             CchhH-HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHh
Q 022057          115 DASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFC  152 (303)
Q Consensus       115 ~p~a~-~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a  152 (303)
                      ..... .......++.|.-++...-.-.+-+.+.|.+.+
T Consensus       276 G~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~  314 (425)
T PRK05476        276 GNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEELA  314 (425)
T ss_pred             CCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcC
Confidence            54333 323444455554444322211222345555543

>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]

Probab=95.19  E-value=0.088  Score=50.73  Aligned_cols=145  Identities=17%  Similarity=0.231  Sum_probs=85.7

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhc---------------------CCcEEEEEEec--CCCCcchhhhhcCC------
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKA---------------------RGMEVAGAIDS--HSVGEDIGMVCDME------   83 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~---------------------~~~eLvg~vd~--~~~g~d~~~~~g~~------   83 (303)
                      .+|+||+|+|- |.-.+.+++-+...                     .|.|+++.+|.  ++.|+|+.+..-..      
T Consensus         3 ~~~vrv~iiG~-Gn~AssLvqgie~~k~~e~~~~~g~~~~~~~~~~~~dieivaafdvd~~KVg~dl~Eai~~~~n~~~~   81 (362)
T COG1260           3 TTMVRVAIIGV-GNCASSLVQGIEYYKAGEDEPVPGLMHRDEGGYKVEDIEIVAAFDVDARKVGKDLSEAIKAPPNVTSK   81 (362)
T ss_pred             cceEEEEEEec-cchHHHHHHHHHHHhccCCCccceeccccccCcCccceEEEEeecccHhhcChhHHHHHhcCCCCCce
Confidence            35899999997 99999988876543                     26689999884  45677765543110      


Q ss_pred             -----CCCCeeec---------CCHHHHHhc--------------cccCCCccEEEEcCC---chhHHHHHHHHHHcCCC
Q 022057           84 -----QPLEIPVM---------SDLTMVLGS--------------ISQSKARAVVIDFTD---ASTVYDNVKQATAFGMR  132 (303)
Q Consensus        84 -----~~~gv~v~---------~dl~~~l~~--------------~~~~~~~DVvIDfT~---p~a~~~~~~~al~~g~~  132 (303)
                           .+.|+.+.         ..+.+.++.              .++....|+++.|.+   .++.+-++..+++.|++
T Consensus        82 ~~~~~~~~Gv~v~~g~~Ldg~~~~l~~~~~~~~~~~e~~~~dvv~vL~~~~tE~lvny~p~gs~~a~~~YA~aal~aG~a  161 (362)
T COG1260          82 IAPDVPKTGVKVRRGPTLDGEGLHLAEYIERIQEESEAEAVDVVVVLNVAKTEVLVNYLPVGSESASYFYAAAALAAGVA  161 (362)
T ss_pred             eecccccCCcEecccCCcCcccchhhhhcchhhcccccccccceeeecccCccccccccccchhHHHHHHHHHHHHcCCc
Confidence                 11122110         112222220              011233444444443   34567788899999999


Q ss_pred             eEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC--cHHHHHHHH-HHHHhc
Q 022057          133 SVVYVPHIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQ-AAISAS  180 (303)
Q Consensus       133 vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~--SiGv~ll~~-~a~~~~  180 (303)
                      .|-.+|-+...+ ..+.++++++|+|++ .=-.  .+|..++.+ +++.++
T Consensus       162 fvN~~P~~iA~d-P~~~~~fee~g~pi~-GDD~ksq~GaTi~h~~La~~f~  210 (362)
T COG1260         162 FVNAIPVFIASD-PAWVELFEEKGLPIA-GDDIKSQTGATILHRVLAQLFA  210 (362)
T ss_pred             eecccCccccCC-HHHHHHHHHcCCcee-ccchhhhcCCceeHHHHHHHHH
Confidence            999998543222 347788899888854 2333  477775533 444444

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=95.15  E-value=0.047  Score=52.66  Aligned_cols=101  Identities=11%  Similarity=0.066  Sum_probs=64.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ..+|||+|. |.||+.+++.+.. .|+.|.. .|++.    -.+.+   .++|..-|+++.++.+     ..+|||+-+|
T Consensus        52 tl~IaIIGf-GnmGqflAetli~-aGh~li~-hsRsd----yssaa---~~yg~~~ft~lhdlce-----rhpDvvLlct  116 (480)
T KOG2380|consen   52 TLVIAIIGF-GNMGQFLAETLID-AGHGLIC-HSRSD----YSSAA---EKYGSAKFTLLHDLCE-----RHPDVVLLCT  116 (480)
T ss_pred             ceEEEEEec-CcHHHHHHHHHHh-cCceeEe-cCcch----hHHHH---HHhcccccccHHHHHh-----cCCCEEEEEe
Confidence            489999997 9999999999884 5776654 44432    22222   3677788888988776     5899999888


Q ss_pred             CchhHHHHHHHH----HHcCCCeEEeCCCCCHHHHHHHHHH
Q 022057          115 DASTVYDNVKQA----TAFGMRSVVYVPHIQLETVSALSAF  151 (303)
Q Consensus       115 ~p~a~~~~~~~a----l~~g~~vVigTTG~~~e~~~~L~~~  151 (303)
                      ........+..+    ++.|. +|.|-|-..+-+.+.++++
T Consensus       117 silsiekilatypfqrlrrgt-lfvdvlSvKefek~lfekY  156 (480)
T KOG2380|consen  117 SILSIEKILATYPFQRLRRGT-LFVDVLSVKEFEKELFEKY  156 (480)
T ss_pred             hhhhHHHHHHhcCchhhccce-eEeeeeecchhHHHHHHHh
Confidence            766555555432    34443 3334444333333344443

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.14  E-value=0.03  Score=53.24  Aligned_cols=90  Identities=10%  Similarity=0.118  Sum_probs=55.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC--CCeeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP--LEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~--~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ..+|+|+|+ |.||+.+++.+....+.+=+-+++++.  ..+..++.....  ..+.+..++++++      .++|+||-
T Consensus       125 ~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~--~~a~~~a~~~~~~g~~~~~~~~~~~av------~~aDIVi~  195 (314)
T PRK06141        125 ASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDP--AKAEALAAELRAQGFDAEVVTDLEAAV------RQADIISC  195 (314)
T ss_pred             CceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHHhcCCceEEeCCHHHHH------hcCCEEEE
Confidence            368999997 999999998777644555556777642  222333311011  1366678888887      47999987


Q ss_pred             cCCchhHHHHH-HHHHHcCCCeEE
Q 022057          113 FTDASTVYDNV-KQATAFGMRSVV  135 (303)
Q Consensus       113 fT~p~a~~~~~-~~al~~g~~vVi  135 (303)
                      .|+..  .+.+ ...++.|.++.+
T Consensus       196 aT~s~--~pvl~~~~l~~g~~i~~  217 (314)
T PRK06141        196 ATLST--EPLVRGEWLKPGTHLDL  217 (314)
T ss_pred             eeCCC--CCEecHHHcCCCCEEEe
Confidence            66432  1222 245677875543

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.10  E-value=0.024  Score=53.78  Aligned_cols=87  Identities=17%  Similarity=0.151  Sum_probs=56.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .+++|+|+ |.||+.+++++....+.+-+.+++++.  ..+..++..-...++.+ .++.++++      .++|+||-+|
T Consensus       126 ~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~--~~a~~~a~~~~~~~~~~~~~~~~~av------~~aDiVitaT  196 (304)
T PRK07340        126 GDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTA--ASAAAFCAHARALGPTAEPLDGEAIP------EAVDLVVTAT  196 (304)
T ss_pred             CEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHHhcCCeeEECCHHHHh------hcCCEEEEcc
Confidence            68999997 999999999998666667788888752  22222221101123333 57888888      4799999877


Q ss_pred             C-chhHHHHHHHHHHcCCCeE
Q 022057          115 D-ASTVYDNVKQATAFGMRSV  134 (303)
Q Consensus       115 ~-p~a~~~~~~~al~~g~~vV  134 (303)
                      + ++.+.+   ..++-|.++.
T Consensus       197 ~s~~Pl~~---~~~~~g~hi~  214 (304)
T PRK07340        197 TSRTPVYP---EAARAGRLVV  214 (304)
T ss_pred             CCCCceeC---ccCCCCCEEE
Confidence            4 333332   2357777766

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.10  E-value=0.35  Score=47.70  Aligned_cols=140  Identities=19%  Similarity=0.195  Sum_probs=74.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCCCCCCeee-cCC-HHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPV-MSD-LTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~~~~~gv~v-~~d-l~~~l~~~~~~~~~DVvID  112 (303)
                      .+|.|+|+ |++|..+++.+. ..+.++++ +|.... .+..+.. .+ .+.++.+ +.+ .++.+      ..+|+||-
T Consensus         6 k~v~iiG~-g~~G~~~A~~l~-~~G~~V~~-~d~~~~-~~~~~~~~~l-~~~~~~~~~~~~~~~~~------~~~d~vv~   74 (450)
T PRK14106          6 KKVLVVGA-GVSGLALAKFLK-KLGAKVIL-TDEKEE-DQLKEALEEL-GELGIELVLGEYPEEFL------EGVDLVVV   74 (450)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-EeCCch-HHHHHHHHHH-HhcCCEEEeCCcchhHh------hcCCEEEE
Confidence            68999998 899999999887 56888764 565320 1111111 01 1334433 222 23333      47999997


Q ss_pred             cCCchhHHHHHHHHHHcCCCe--------------EEeCCCCCHH--HHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHH
Q 022057          113 FTDASTVYDNVKQATAFGMRS--------------VVYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~v--------------VigTTG~~~e--~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a  176 (303)
                      .+......+.+..|.+.|+++              |||-||-.-.  -.+-|..+-+..+-++.+..|  +|+.+.....
T Consensus        75 ~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~--ig~~~~~~~~  152 (450)
T PRK14106         75 SPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGN--IGYPLIDAVE  152 (450)
T ss_pred             CCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCc--ccHHHHHHHh
Confidence            765444455566666666655              4555653211  122344444444445566666  5655432221


Q ss_pred             HHhccCCCcEEEEEc
Q 022057          177 ISASFHYKNVEIVES  191 (303)
Q Consensus       177 ~~~~~~~~dieIiE~  191 (303)
                      . .  ...|+-++|+
T Consensus       153 ~-~--~~~~~~v~E~  164 (450)
T PRK14106        153 E-Y--GEDDIIVAEV  164 (450)
T ss_pred             c-C--CCCCEEEEEc
Confidence            1 1  1245566665

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=95.08  E-value=0.098  Score=54.61  Aligned_cols=33  Identities=24%  Similarity=0.243  Sum_probs=29.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      ++||.|.|++|-+|+.+++.+.++.+++++++.
T Consensus       315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~  347 (660)
T PRK08125        315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLD  347 (660)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEe
Confidence            579999999999999999999876679999864

>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

Probab=95.07  E-value=0.27  Score=48.70  Aligned_cols=89  Identities=20%  Similarity=0.278  Sum_probs=61.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHH---HHhccccCCCccE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAV  109 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~---~l~~~~~~~~~DV  109 (303)
                      .-|+.|+|+ |..|+.+++.+.+++  +++++|.+|.+..  +..      ...|+|+..+.++   .+.+    .++|.
T Consensus       125 ~~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~--~~~------~i~g~pVlg~~~~l~~~i~~----~~id~  191 (445)
T TIGR03025       125 LRRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPS--DRV------EVAGLPVLGKLDDLVELVRA----HRVDE  191 (445)
T ss_pred             CCcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCcc--ccc------ccCCCcccCCHHHHHHHHHh----CCCCE
Confidence            357999997 999999999998765  5899999986421  111      1346777765554   4442    57886


Q ss_pred             EEEcCC---chhHHHHHHHHHHcCCCeEEe
Q 022057          110 VIDFTD---ASTVYDNVKQATAFGMRSVVY  136 (303)
Q Consensus       110 vIDfT~---p~a~~~~~~~al~~g~~vVig  136 (303)
                      |+-..+   ++...+.+..|.++|+++.+-
T Consensus       192 ViIa~p~~~~~~~~~ll~~~~~~gv~V~~v  221 (445)
T TIGR03025       192 VIIALPLSEEARILELLLQLRDLGVDVRLV  221 (445)
T ss_pred             EEEecCcccHHHHHHHHHHHHhcCCEEEEe
Confidence            664432   233456788899999987754

Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=95.07  E-value=0.32  Score=45.78  Aligned_cols=105  Identities=16%  Similarity=0.111  Sum_probs=60.9

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEE-EEEEecCCCCcchhhhhcCCCCCCeee--cCCH-HHHHhccccCCCccE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEV-AGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDL-TMVLGSISQSKARAV  109 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eL-vg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl-~~~l~~~~~~~~~DV  109 (303)
                      ++++|+|+|. |.||+.+++.+.+ .+..+ +-..|...  .. .+.+   ...|+.-  ..+. .+.+      ..+|+
T Consensus         2 ~~~~v~IvG~-GliG~s~a~~l~~-~g~~v~i~g~d~~~--~~-~~~a---~~lgv~d~~~~~~~~~~~------~~aD~   67 (279)
T COG0287           2 ASMKVGIVGL-GLMGGSLARALKE-AGLVVRIIGRDRSA--AT-LKAA---LELGVIDELTVAGLAEAA------AEADL   67 (279)
T ss_pred             CCcEEEEECC-chHHHHHHHHHHH-cCCeEEEEeecCcH--HH-HHHH---hhcCcccccccchhhhhc------ccCCE
Confidence            4689999997 9999999998874 55544 33333321  00 0000   1223321  1222 2222      46899


Q ss_pred             EEEcCCchhHHHHHHHHHH-cCCC-eEEeCCCCCHHHHHHHHHHh
Q 022057          110 VIDFTDASTVYDNVKQATA-FGMR-SVVYVPHIQLETVSALSAFC  152 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~-~g~~-vVigTTG~~~e~~~~L~~~a  152 (303)
                      ||-+++..++.+.++.... .... +|+.+|.....-.+.++++.
T Consensus        68 VivavPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~  112 (279)
T COG0287          68 VIVAVPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL  112 (279)
T ss_pred             EEEeccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence            9988888888888887763 4443 45555555444455555554

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=95.04  E-value=0.13  Score=48.07  Aligned_cols=86  Identities=16%  Similarity=0.227  Sum_probs=50.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |||.|.|++|-+|+.+++.+.+. + ++++ +|+...     .+     ..++.-...++++++.    .++|+||.+..
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~-g-~V~~-~~~~~~-----~~-----~~Dl~d~~~~~~~~~~----~~~D~Vih~Aa   63 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPL-G-NLIA-LDVHST-----DY-----CGDFSNPEGVAETVRK----IRPDVIVNAAA   63 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhcc-C-CEEE-eccccc-----cc-----cCCCCCHHHHHHHHHh----cCCCEEEECCc
Confidence            48999999999999999988754 4 5554 443210     00     0111112234455542    36999998742


Q ss_pred             ----------ch--------hHHHHHHHHHHcCCCeEEeCC
Q 022057          116 ----------AS--------TVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       116 ----------p~--------a~~~~~~~al~~g~~vVigTT  138 (303)
                                |+        .....++.|.++|+++|.-+|
T Consensus        64 ~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss  104 (299)
T PRK09987         64 HTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYST  104 (299)
T ss_pred             cCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence                      11        123455667777877775444

>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase

Probab=94.99  E-value=0.31  Score=48.36  Aligned_cols=89  Identities=17%  Similarity=0.206  Sum_probs=62.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHH---HHhccccCCCccE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAV  109 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~---~l~~~~~~~~~DV  109 (303)
                      .-|+.|+|+ |..|+.+++.+.+++  +++++|.+|.+..  ..+      ...++|+..+.++   .+++    .++|.
T Consensus       128 ~~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~--~~~------~~~gvpVlg~~~dl~~~i~~----~~vd~  194 (451)
T TIGR03023       128 LRRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPD--ART------GVRGVPVLGKLDDLEELIRE----GEVDE  194 (451)
T ss_pred             CCcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCc--ccc------ccCCCCccCCHHHHHHHHHh----cCCCE
Confidence            357999997 999999999998755  5899999985421  111      1246777665444   4443    67887


Q ss_pred             EEEcCC---chhHHHHHHHHHHcCCCeEEe
Q 022057          110 VIDFTD---ASTVYDNVKQATAFGMRSVVY  136 (303)
Q Consensus       110 vIDfT~---p~a~~~~~~~al~~g~~vVig  136 (303)
                      ||...+   ++...+.+..|.+.|+++.+-
T Consensus       195 ViIA~p~~~~~~~~~ll~~~~~~gv~V~vv  224 (451)
T TIGR03023       195 VYIALPLAAEDRILELLDALEDLTVDVRLV  224 (451)
T ss_pred             EEEeeCcccHHHHHHHHHHHHhcCCEEEEe
Confidence            775543   344567788899999988764

Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=94.95  E-value=0.056  Score=49.82  Aligned_cols=119  Identities=18%  Similarity=0.220  Sum_probs=75.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCC-------------eeecCCHHHH
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-------------IPVMSDLTMV   97 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~~~~g-------------v~v~~dl~~~   97 (303)
                      .+|+|-|+ |++|+..++.+.+ .+..++++.|..     ..|-|..++.......+             ...+++-+++
T Consensus        33 ~~v~IqGf-G~VG~~~a~~l~~-~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i  110 (244)
T PF00208_consen   33 KRVAIQGF-GNVGSHAARFLAE-LGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEI  110 (244)
T ss_dssp             CEEEEEES-SHHHHHHHHHHHH-TTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHG
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-cCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccccc
Confidence            78999997 9999999998885 599999997742     23555544442111111             1222221266


Q ss_pred             HhccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057           98 LGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (303)
Q Consensus        98 l~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT--G~~~e~~~~L~~~a~~~~i~vv~a~N~Si  167 (303)
                      +.     .++||+|=+..+... .+++...++.|..+|+|-.  .++++..+   . -+++  .+++.|.|..
T Consensus       111 l~-----~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~---~-L~~r--GI~viPD~~a  172 (244)
T PF00208_consen  111 LS-----VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE---I-LRER--GILVIPDFLA  172 (244)
T ss_dssp             GT-----SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH---H-HHHT--T-EEE-HHHH
T ss_pred             cc-----ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH---H-HHHC--CCEEEcchhh
Confidence            65     589999988866655 6677767899999999976  35665432   2 3443  4567777653

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK13243 glyoxylate reductase; Reviewed

Probab=94.94  E-value=0.12  Score=49.68  Aligned_cols=64  Identities=17%  Similarity=0.118  Sum_probs=44.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|+ |+||+.+++.+. .-++++. ++|+..  .....     ...++. +.++++++.      .+|+|+-..
T Consensus       150 gktvgIiG~-G~IG~~vA~~l~-~~G~~V~-~~d~~~--~~~~~-----~~~~~~-~~~l~ell~------~aDiV~l~l  212 (333)
T PRK13243        150 GKTIGIIGF-GRIGQAVARRAK-GFGMRIL-YYSRTR--KPEAE-----KELGAE-YRPLEELLR------ESDFVSLHV  212 (333)
T ss_pred             CCEEEEECc-CHHHHHHHHHHH-HCCCEEE-EECCCC--ChhhH-----HHcCCE-ecCHHHHHh------hCCEEEEeC
Confidence            368999998 999999999887 4588876 467642  11110     123333 458999984      789998665


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       213 P  213 (333)
T PRK13243        213 P  213 (333)
T ss_pred             C
Confidence            3

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=94.92  E-value=0.13  Score=49.45  Aligned_cols=149  Identities=12%  Similarity=0.127  Sum_probs=85.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .+|+|+|+ |.||+.+++.+. .-++++++..++.   .... .+   ...|+.+ .+++++++      .+|+|+-..+
T Consensus        17 KtVGIIG~-GsIG~amA~nL~-d~G~~ViV~~r~~---~s~~-~A---~~~G~~v-~sl~Eaak------~ADVV~llLP   80 (335)
T PRK13403         17 KTVAVIGY-GSQGHAQAQNLR-DSGVEVVVGVRPG---KSFE-VA---KADGFEV-MSVSEAVR------TAQVVQMLLP   80 (335)
T ss_pred             CEEEEEeE-cHHHHHHHHHHH-HCcCEEEEEECcc---hhhH-HH---HHcCCEE-CCHHHHHh------cCCEEEEeCC
Confidence            57999998 999999999887 5789998755432   1111 11   1234444 37899884      7999886554


Q ss_pred             chhHHHHHH-HHHHc-CC-CeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcEEEEEcc
Q 022057          116 ASTVYDNVK-QATAF-GM-RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESR  192 (303)
Q Consensus       116 p~a~~~~~~-~al~~-g~-~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~H  192 (303)
                      -+...+.+. ..+.+ .. .+++=..||+- .+..|   ---.++-++..+-=+.|..+=..+.+-..  .+.  .+=.|
T Consensus        81 d~~t~~V~~~eil~~MK~GaiL~f~hgfni-~~~~i---~pp~~vdv~mvaPKgpG~~vR~~y~~G~G--vp~--l~av~  152 (335)
T PRK13403         81 DEQQAHVYKAEVEENLREGQMLLFSHGFNI-HFGQI---NPPSYVDVAMVAPKSPGHLVRRVFQEGNG--VPA--LVAVH  152 (335)
T ss_pred             ChHHHHHHHHHHHhcCCCCCEEEECCCcce-ecCce---eCCCCCeEEEECCCCCChHHHHHHHcCCC--cee--EEEEE
Confidence            333333332 12222 12 23444458764 22222   12234666666666777755444442211  122  22223


Q ss_pred             CCCCCCCcHHHHHHHHHHHh
Q 022057          193 PNARDFPSPDATQIANNLSN  212 (303)
Q Consensus       193 h~K~DaPSGTA~~l~~~i~~  212 (303)
                      +   | +||.|..+|-+.+.
T Consensus       153 q---d-~sg~a~~~ala~a~  168 (335)
T PRK13403        153 Q---D-ATGTALHVALAYAK  168 (335)
T ss_pred             E---C-CCCcHHHHHHHHHH
Confidence            2   5 89999999888876

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.90  E-value=0.19  Score=48.17  Aligned_cols=32  Identities=28%  Similarity=0.314  Sum_probs=26.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      -||+|+|+ |-||+.++..+. ..+++++ ++|..
T Consensus         8 ~~VaVIGa-G~MG~giA~~~a-~aG~~V~-l~D~~   39 (321)
T PRK07066          8 KTFAAIGS-GVIGSGWVARAL-AHGLDVV-AWDPA   39 (321)
T ss_pred             CEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEeCC
Confidence            57999998 999999999877 5688887 47753

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=94.89  E-value=0.14  Score=47.62  Aligned_cols=32  Identities=25%  Similarity=0.409  Sum_probs=27.4

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      |.|.|++|-+|+.+++.+.+ .+.+++.++|..
T Consensus         2 ilVtGa~GfiG~~l~~~L~~-~g~~~v~~~~~~   33 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALND-KGITDILVVDNL   33 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHh-CCCceEEEecCC
Confidence            78999999999999999886 477888888764

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=94.89  E-value=0.15  Score=42.54  Aligned_cols=32  Identities=22%  Similarity=0.300  Sum_probs=28.7

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEec
Q 022057           38 VIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS   69 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~   69 (303)
                      |.|.|+||-+|+...+.+.+.| .+++++....
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~   33 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG   33 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC
Confidence            6899999999999999999888 5999998764

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=94.86  E-value=0.19  Score=48.10  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=26.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC------CcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~------~~eLvg~vd~   69 (303)
                      ++||+|+|++|.+|+.++..+...+      +.+|+. +|.
T Consensus         2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L-~D~   41 (325)
T cd01336           2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHL-LDI   41 (325)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEE-EEc
Confidence            5899999999999999999887643      236765 564

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=94.84  E-value=0.062  Score=45.16  Aligned_cols=128  Identities=15%  Similarity=0.098  Sum_probs=65.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g--~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (303)
                      |||+|+|++|.+|+.++-.+...+-..=+..+|.+.   .|  .|+...... ....+.+..+..+.+      .++|+|
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~-~~~~~~i~~~~~~~~------~~aDiv   73 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAP-LPSPVRITSGDYEAL------KDADIV   73 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHG-STEEEEEEESSGGGG------TTESEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhh-ccccccccccccccc------ccccEE
Confidence            699999999999999999888765433244677641   11  122222110 112233333333444      479998


Q ss_pred             EEcC-CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccC
Q 022057          111 IDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH  182 (303)
Q Consensus       111 IDfT-~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~  182 (303)
                      |-.. .|..--+.-...++.+.+++       .+-.+.|.+.+.+  .-+++.+|=   +++|-++++..+++
T Consensus        74 vitag~~~~~g~sR~~ll~~N~~i~-------~~~~~~i~~~~p~--~~vivvtNP---vd~~t~~~~~~s~~  134 (141)
T PF00056_consen   74 VITAGVPRKPGMSRLDLLEANAKIV-------KEIAKKIAKYAPD--AIVIVVTNP---VDVMTYVAQKYSGF  134 (141)
T ss_dssp             EETTSTSSSTTSSHHHHHHHHHHHH-------HHHHHHHHHHSTT--SEEEE-SSS---HHHHHHHHHHHHTS
T ss_pred             EEeccccccccccHHHHHHHhHhHH-------HHHHHHHHHhCCc--cEEEEeCCc---HHHHHHHHHHhhCc
Confidence            8543 11100000011112222222       2344556666633  456666664   67777777666643

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.83  E-value=0.13  Score=52.16  Aligned_cols=32  Identities=22%  Similarity=0.297  Sum_probs=26.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      -||+|+|+ |.||+.|+..+. ..+++++ ++|.+
T Consensus         8 ~~V~VIGa-G~MG~gIA~~la-~aG~~V~-l~D~~   39 (507)
T PRK08268          8 ATVAVIGA-GAMGAGIAQVAA-QAGHTVL-LYDAR   39 (507)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCeEE-EEeCC
Confidence            47999998 999999999877 4588887 46753

>PLN02427 UDP-apiose/xylose synthase

Probab=94.82  E-value=0.19  Score=48.50  Aligned_cols=33  Identities=15%  Similarity=0.071  Sum_probs=28.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      +|||.|.|++|-+|+.+++.+.+..+.+++++.
T Consensus        14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~   46 (386)
T PLN02427         14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALD   46 (386)
T ss_pred             CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence            579999999999999999999876568887753

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=94.81  E-value=0.28  Score=46.32  Aligned_cols=123  Identities=15%  Similarity=0.192  Sum_probs=71.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh--hhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM--VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~--~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ..||.|+|+ |.+|.++++.+. ..++.=+.++|.+... .|+..  +... +..|-+-.....+-+.+    .+++|-|
T Consensus        19 ~s~VLIvG~-gGLG~EiaKnLa-laGVg~itI~D~d~ve~snL~rqf~~~~-~dIGk~Kaea~~~~L~e----LNp~V~V   91 (286)
T cd01491          19 KSNVLISGL-GGLGVEIAKNLI-LAGVKSVTLHDTKPCSWSDLSSQFYLRE-EDIGKNRAEASQARLAE----LNPYVPV   91 (286)
T ss_pred             cCcEEEEcC-CHHHHHHHHHHH-HcCCCeEEEEcCCccchhhcccCccCCh-HHhCHHHHHHHHHHHHH----HCCCCEE
Confidence            368999998 999999999987 5788777788854210 11110  0000 00010001111122222    4678777


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHH
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~  170 (303)
                      +..+.....+.+     .+..+|+-|+. +.+....|.++|+++++|++.+.-..+...
T Consensus        92 ~~~~~~~~~~~l-----~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G~~G~  144 (286)
T cd01491          92 TVSTGPLTTDEL-----LKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRGLFGS  144 (286)
T ss_pred             EEEeccCCHHHH-----hcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccccEEE
Confidence            654332222332     24557777654 666777899999999999998776555443

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.79  E-value=0.2  Score=44.63  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=26.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      ..||+|+|+ |.||..++..+.. .++.=+-++|.+
T Consensus        21 ~~~V~IvG~-GglGs~ia~~La~-~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGL-GGLGSNVAINLAR-AGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHH-cCCCEEEEECCC
Confidence            468999999 9999999998874 577444467753

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=94.78  E-value=0.31  Score=41.98  Aligned_cols=85  Identities=22%  Similarity=0.252  Sum_probs=53.6

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcCC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT~  115 (303)
                      ++.|+|+ |..|+.+++.+. +.+++++|.+|.+..  ..+.     .-.|+|++.+.+++....   .+.+ +++....
T Consensus         1 ~~~I~Ga-g~~g~~~~~~l~-~~g~~vvgfid~~~~--~~~~-----~i~g~pvlg~~~~l~~~~---~~~~~~iiai~~   68 (201)
T TIGR03570         1 KLVIIGA-GGHGRVVADIAE-DSGWEIVGFLDDNPA--LQGT-----SVDGLPVLGGDEDLLRYP---PDEVDLVVAIGD   68 (201)
T ss_pred             CEEEEcC-CHHHHHHHHHHH-hCCCEEEEEEcCCcc--ccCc-----ccCCccEECCHHHHhhhc---ccccEEEEEcCC
Confidence            4789998 999999999886 468999999986421  0111     124677776665543210   1233 4444445


Q ss_pred             chhHHHHHHHHHHcCCCe
Q 022057          116 ASTVYDNVKQATAFGMRS  133 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~v  133 (303)
                      +....+.+..+.+.+.++
T Consensus        69 ~~~~~~i~~~l~~~g~~~   86 (201)
T TIGR03570        69 NKLRRRLFEKLKAKGYRF   86 (201)
T ss_pred             HHHHHHHHHHHHhCCCcc
Confidence            555566666666666544

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.76  E-value=0.18  Score=45.61  Aligned_cols=97  Identities=25%  Similarity=0.304  Sum_probs=63.1

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhc-CCcEEEE--EEecCCCCcchhhhhcCCCCCCeeecC-CHHHHHhccccCCCccE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAG--AIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAV  109 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg--~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DV  109 (303)
                      ++.||+|+|. |++|.-+.-.+..+ ..+|.-+  .+|+..-|..  . +   .++|++.+. -++-+|.. -...+.|.
T Consensus         3 sk~kvaiigs-gni~tdlm~k~lr~g~~le~~~mvgidp~sdgla--r-a---arlgv~tt~egv~~ll~~-p~~~di~l   74 (310)
T COG4569           3 SKRKVAIIGS-GNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLA--R-A---ARLGVATTHEGVIGLLNM-PEFADIDL   74 (310)
T ss_pred             CcceEEEEcc-CcccHHHHHHHHhcCCcccceeEEccCCCccHHH--H-H---HhcCCcchhhHHHHHHhC-CCCCCcce
Confidence            4689999995 99999865555544 4455443  3455322211  1 1   245665543 34445531 01123458


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~g~~vVigTT  138 (303)
                      |.|.|+.-++.++...+.+.|++++-=|+
T Consensus        75 vfdatsa~~h~~~a~~~ae~gi~~idltp  103 (310)
T COG4569          75 VFDATSAGAHVKNAAALAEAGIRLIDLTP  103 (310)
T ss_pred             EEeccccchhhcchHhHHhcCCceeecch
Confidence            99999999999999999999999997776

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.75  E-value=0.28  Score=48.31  Aligned_cols=128  Identities=16%  Similarity=0.263  Sum_probs=68.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeec----CCHHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |||.|+|+ |++|+.+++.+.+ .+.+++ ++|++.  .....+.   ...++++.    .+.+.+.+.  ...++|.+|
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~-~g~~v~-vid~~~--~~~~~~~---~~~~~~~~~gd~~~~~~l~~~--~~~~a~~vi   70 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSG-ENNDVT-VIDTDE--ERLRRLQ---DRLDVRTVVGNGSSPDVLREA--GAEDADLLI   70 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCcEE-EEECCH--HHHHHHH---hhcCEEEEEeCCCCHHHHHHc--CCCcCCEEE
Confidence            58999998 9999999998874 578887 566532  1122221   11233321    122222110  014789888


Q ss_pred             EcCCchhHHH-HHHHHHHc-CCCeEEeCCCCCHHHHHHHHHHh--hhcCCeEEEcCCCcHHHHHHHHH
Q 022057          112 DFTDASTVYD-NVKQATAF-GMRSVVYVPHIQLETVSALSAFC--DKASMGCLIAPTLSIGSILLQQA  175 (303)
Q Consensus       112 DfT~p~a~~~-~~~~al~~-g~~vVigTTG~~~e~~~~L~~~a--~~~~i~vv~a~N~SiGv~ll~~~  175 (303)
                      -++..+.... ....+.+. +.+-++..+--.+ . .+..++.  ++.|+..+++|..-.+-.+...+
T Consensus        71 ~~~~~~~~n~~~~~~~r~~~~~~~ii~~~~~~~-~-~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~~l  136 (453)
T PRK09496         71 AVTDSDETNMVACQIAKSLFGAPTTIARVRNPE-Y-AEYDKLFSKEALGIDLLISPELLVAREIARLI  136 (453)
T ss_pred             EecCChHHHHHHHHHHHHhcCCCeEEEEECCcc-c-cchhhhhhhhcCCccEEECHHHHHHHHHHHHh
Confidence            6665444433 33444443 5544444332221 1 1223333  55678888988877776655544

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=94.69  E-value=0.094  Score=51.93  Aligned_cols=85  Identities=21%  Similarity=0.261  Sum_probs=59.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ..||.|+|+ |.||+.+++.+.+ .++.-+-+++++.  ..+.+++.   +++.  ..++++.+.+      .++||||-
T Consensus       178 ~~~vlvIGA-Gem~~lva~~L~~-~g~~~i~IaNRT~--erA~~La~---~~~~~~~~l~el~~~l------~~~DvVis  244 (414)
T COG0373         178 DKKVLVIGA-GEMGELVAKHLAE-KGVKKITIANRTL--ERAEELAK---KLGAEAVALEELLEAL------AEADVVIS  244 (414)
T ss_pred             cCeEEEEcc-cHHHHHHHHHHHh-CCCCEEEEEcCCH--HHHHHHHH---HhCCeeecHHHHHHhh------hhCCEEEE
Confidence            457999998 9999999999885 5666666777653  34445552   4442  3356666676      47999998


Q ss_pred             cC-Cc--hhHHHHHHHHHHcCCC
Q 022057          113 FT-DA--STVYDNVKQATAFGMR  132 (303)
Q Consensus       113 fT-~p--~a~~~~~~~al~~g~~  132 (303)
                      .| .|  -...+.+..+++..+.
T Consensus       245 sTsa~~~ii~~~~ve~a~~~r~~  267 (414)
T COG0373         245 STSAPHPIITREMVERALKIRKR  267 (414)
T ss_pred             ecCCCccccCHHHHHHHHhcccC
Confidence            76 33  3447788888887777

>PRK07877 hypothetical protein; Provisional

Probab=94.64  E-value=0.14  Score=54.12  Aligned_cols=95  Identities=15%  Similarity=0.237  Sum_probs=57.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecC-----C----------CCcchh-----hhhcCCCCCCeeec--
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH-----S----------VGEDIG-----MVCDMEQPLEIPVM--   91 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~-----~----------~g~d~~-----~~~g~~~~~gv~v~--   91 (303)
                      ..||+|+|+ | +|..++..+.. .++ -=.-++|.+     +          .|+.-.     .+..+.....|..+  
T Consensus       107 ~~~V~IvG~-G-lGs~~a~~Lar-aGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~  183 (722)
T PRK07877        107 RLRIGVVGL-S-VGHAIAHTLAA-EGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD  183 (722)
T ss_pred             cCCEEEEEe-c-HHHHHHHHHHH-ccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence            468999999 8 99999998874 453 222345521     1          111110     01111122333332  


Q ss_pred             ----CCHHHHHhccccCCCccEEEEcCCc-hhHHHHHHHHHHcCCCeEEeCC
Q 022057           92 ----SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVvIDfT~p-~a~~~~~~~al~~g~~vVigTT  138 (303)
                          +++++++      .++|+|||++.. +.=.-.-..|.++|+|+|.|+.
T Consensus       184 ~i~~~n~~~~l------~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~  229 (722)
T PRK07877        184 GLTEDNVDAFL------DGLDVVVEECDSLDVKVLLREAARARRIPVLMATS  229 (722)
T ss_pred             cCCHHHHHHHh------cCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence                2566666      479999999954 4445555789999999999884

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=94.64  E-value=0.18  Score=51.61  Aligned_cols=89  Identities=13%  Similarity=0.197  Sum_probs=63.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCH--HHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL--TMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl--~~~l~~~~~~~~~DVvID  112 (303)
                      ..|+.|+|+ |.-|..+++.+...+.+..||.+|.+.      ...|. .-.|+||+...  .++++    +...|-++-
T Consensus       116 ~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~------~~~g~-~i~Gv~V~g~~~i~~~v~----~~~~~~iii  183 (588)
T COG1086         116 RIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDP------DLTGM-KIRGVPVLGRIEIERVVE----ELGIQLILI  183 (588)
T ss_pred             CCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCCh------hhcCC-EEeceeeechhHHHHHHH----HcCCceEEE
Confidence            579999998 999999999999999999999999652      22232 23578887644  44444    356664433


Q ss_pred             c---CCchhHHHHHHHHHHcCCCeEE
Q 022057          113 F---TDASTVYDNVKQATAFGMRSVV  135 (303)
Q Consensus       113 f---T~p~a~~~~~~~al~~g~~vVi  135 (303)
                      +   -.++...+.++.+.+.|+.+=+
T Consensus       184 Aips~~~~~~~~i~~~l~~~~~~v~~  209 (588)
T COG1086         184 AIPSASQEERRRILLRLARTGIAVRI  209 (588)
T ss_pred             ecCCCCHHHHHHHHHHHHhcCCcEEe
Confidence            3   2566777888888899866543

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.62  E-value=0.87  Score=45.08  Aligned_cols=137  Identities=13%  Similarity=0.126  Sum_probs=74.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCeeec-CC-HHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SD-LTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~d-l~~~l~~~~~~~~~DVvI  111 (303)
                      +.||.|+|. |+.|...++.+....+ .++.+ .|....-.....+    +. |+.++ .. -.+.+      .++|+||
T Consensus         7 ~~~v~viG~-G~sG~s~~~~l~~~~~~~~v~~-~D~~~~~~~~~~l----~~-g~~~~~g~~~~~~~------~~~d~vV   73 (438)
T PRK04663          7 IKNVVVVGL-GITGLSVVKHLRKYQPQLTVKV-IDTRETPPGQEQL----PE-DVELHSGGWNLEWL------LEADLVV   73 (438)
T ss_pred             CceEEEEec-cHHHHHHHHHHHhcCCCCeEEE-EeCCCCchhHHHh----hc-CCEEEeCCCChHHh------ccCCEEE
Confidence            368999998 9999999999887765 77764 7753211111112    12 66553 21 22334      3689877


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeE--------------EeCCCCCHH--HHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH
Q 022057          112 DFTDASTVYDNVKQATAFGMRSV--------------VYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vV--------------igTTG~~~e--~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~  175 (303)
                      -.+.-....+.+..|.++|+|++              ||-||-+-.  -..-|..+-++.+....+..|+  |+.++.. 
T Consensus        74 ~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni--G~~~~~~-  150 (438)
T PRK04663         74 TNPGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNI--GVPALDL-  150 (438)
T ss_pred             ECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEccc--CHHHHhh-
Confidence            54421222344555666666655              454553211  1223444455566666777884  5554321 


Q ss_pred             HHHhccCCCcEEEEEc
Q 022057          176 AISASFHYKNVEIVES  191 (303)
Q Consensus       176 a~~~~~~~~dieIiE~  191 (303)
                         +.. ..|+-|+|.
T Consensus       151 ---~~~-~~~~~V~E~  162 (438)
T PRK04663        151 ---LEQ-DAELYVLEL  162 (438)
T ss_pred             ---hcC-CCCEEEEEc
Confidence               111 236667775

>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP

Probab=94.60  E-value=0.46  Score=47.27  Aligned_cols=93  Identities=18%  Similarity=0.223  Sum_probs=58.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCC--HHHHHhccccCCCccEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVV  110 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~d--l~~~l~~~~~~~~~DVv  110 (303)
                      +-|+.|+|+ |..|+.+++.+.+++  +++++|.+|.+..  ..+.     .-.++|+..+  +.+.+.+    .++|.|
T Consensus       125 ~rrvlIiGa-g~~~~~l~~~l~~~~~~g~~vvGfidd~~~--~~~~-----~i~g~pVlg~~~l~~~i~~----~~id~V  192 (456)
T TIGR03022       125 GRPAVIIGA-GQNAAILYRALQSNPQLGLRPLAVVDTDPA--ASGR-----LLTGLPVVGADDALRLYAR----TRYAYV  192 (456)
T ss_pred             CceEEEEeC-CHHHHHHHHHHhhCccCCcEEEEEEeCCcc--cccc-----ccCCCcccChhHHHHHHHh----CCCCEE
Confidence            457999998 999999999987655  6899999986421  1111     1235666544  3344432    567855


Q ss_pred             EEcC---CchhHHHHHHHHHHcCC-CeEEeCCCC
Q 022057          111 IDFT---DASTVYDNVKQATAFGM-RSVVYVPHI  140 (303)
Q Consensus       111 IDfT---~p~a~~~~~~~al~~g~-~vVigTTG~  140 (303)
                      +-..   .++...+.+..|.+.++ ++.+ -|.+
T Consensus       193 iIAip~~~~~~~~~ll~~l~~~~v~~V~~-vP~~  225 (456)
T TIGR03022       193 IVAMPGTQAEDMARLVRKLGALHFRNVLI-VPSL  225 (456)
T ss_pred             EEecCCccHHHHHHHHHHHHhCCCeEEEE-eCcc
Confidence            5333   23455677778888888 5444 3443

This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.54  E-value=0.27  Score=45.77  Aligned_cols=95  Identities=14%  Similarity=0.071  Sum_probs=54.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC-------CCCCeeecCCHHHHHhccccCCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME-------QPLEIPVMSDLTMVLGSISQSKA  106 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~-------~~~gv~v~~dl~~~l~~~~~~~~  106 (303)
                      |||+|+|+ |.||..++..+.+. +.++..+ ++..   ....+.  |+.       ........++.++..      .+
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~-g~~V~~~-~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~   68 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEA-GRDVTFL-VRPK---RAKALRERGLVIRSDHGDAVVPGPVITDPEELT------GP   68 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHC-CCceEEE-ecHH---HHHHHHhCCeEEEeCCCeEEecceeecCHHHcc------CC
Confidence            58999998 99999999988754 6665543 3311   111111  000       001112345555554      47


Q ss_pred             ccEEEEcCCchhHHHHHHHHHH---cCCCeEEeCCCCCH
Q 022057          107 RAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL  142 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~~~al~---~g~~vVigTTG~~~  142 (303)
                      +|++|-++.+..+.+.+.....   .+..+|+-..|+..
T Consensus        69 ~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~  107 (305)
T PRK12921         69 FDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQ  107 (305)
T ss_pred             CCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCCh
Confidence            8999988876666665554433   34445544458753

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.53  E-value=1.7  Score=41.55  Aligned_cols=70  Identities=16%  Similarity=0.152  Sum_probs=42.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCC---Cc--chhhhhcC-CCCCCeeecCCHHHHHhccccCCCc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV---GE--DIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKAR  107 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~---g~--d~~~~~g~-~~~~gv~v~~dl~~~l~~~~~~~~~  107 (303)
                      +.||+|+|+ |.||..++..+.. ++ .+ +..+|.+..   |+  |....... .....+..++|++++       .++
T Consensus         6 ~~KI~IIGa-G~vG~~ia~~la~-~gl~~-i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l-------~~a   75 (321)
T PTZ00082          6 RRKISLIGS-GNIGGVMAYLIVL-KNLGD-VVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDI-------AGS   75 (321)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCCe-EEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHh-------CCC
Confidence            368999998 9999999987764 45 47 667886421   11  11111100 011234445788654       489


Q ss_pred             cEEEEcC
Q 022057          108 AVVIDFT  114 (303)
Q Consensus       108 DVvIDfT  114 (303)
                      |+||...
T Consensus        76 DiVI~ta   82 (321)
T PTZ00082         76 DVVIVTA   82 (321)
T ss_pred             CEEEECC
Confidence            9998743

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.52  E-value=0.19  Score=45.55  Aligned_cols=126  Identities=21%  Similarity=0.249  Sum_probs=71.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeec----CCHHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |+++|+|+ |++|+.+++.+.+ .+.+++.+-+.+   ....+...  ...++.+.    ++.+.+.+.  --.++|++|
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~-~g~~Vv~Id~d~---~~~~~~~~--~~~~~~~v~gd~t~~~~L~~a--gi~~aD~vv   71 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSE-EGHNVVLIDRDE---ERVEEFLA--DELDTHVVIGDATDEDVLEEA--GIDDADAVV   71 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHh-CCCceEEEEcCH---HHHHHHhh--hhcceEEEEecCCCHHHHHhc--CCCcCCEEE
Confidence            68999999 9999999999884 577777654422   11122111  12333221    233333221  124689998


Q ss_pred             EcCCchhHHHHH-HHHHH-cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH
Q 022057          112 DFTDASTVYDNV-KQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (303)
Q Consensus       112 DfT~p~a~~~~~-~~al~-~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~  175 (303)
                      -.|..+.....+ ..+++ .|+|-|+-+.-- ++..+.+    ++-|+-.+++|=...|-.+...+
T Consensus        72 a~t~~d~~N~i~~~la~~~~gv~~viar~~~-~~~~~~~----~~~g~~~ii~Pe~~~~~~l~~~i  132 (225)
T COG0569          72 AATGNDEVNSVLALLALKEFGVPRVIARARN-PEHEKVL----EKLGADVIISPEKLAAKRLARLI  132 (225)
T ss_pred             EeeCCCHHHHHHHHHHHHhcCCCcEEEEecC-HHHHHHH----HHcCCcEEECHHHHHHHHHHHHh
Confidence            777665543333 33434 799999876533 2222222    33346678877777776555444

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.50  E-value=1  Score=45.26  Aligned_cols=137  Identities=14%  Similarity=0.138  Sum_probs=72.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecC--CHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVvID  112 (303)
                      +.||.|+|+ |+.|+.+++.+. ..+.++. +.|.+..  ...++.   .+.|++++.  +..+.+      .++|+||-
T Consensus        15 ~~~v~v~G~-G~sG~a~a~~L~-~~G~~V~-~~D~~~~--~~~~~l---~~~gi~~~~~~~~~~~~------~~~d~vV~   80 (473)
T PRK00141         15 SGRVLVAGA-GVSGRGIAAMLS-ELGCDVV-VADDNET--ARHKLI---EVTGVADISTAEASDQL------DSFSLVVT   80 (473)
T ss_pred             CCeEEEEcc-CHHHHHHHHHHH-HCCCEEE-EECCChH--HHHHHH---HhcCcEEEeCCCchhHh------cCCCEEEe
Confidence            468999998 999999999877 5667654 4775321  112221   245776642  223334      36898874


Q ss_pred             cC-CchhHHHHHHHHHHcCCCe---------------------EEeCCCCCHH--HHHHHHHHhhhcCCeEEEcCCCcHH
Q 022057          113 FT-DASTVYDNVKQATAFGMRS---------------------VVYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIG  168 (303)
Q Consensus       113 fT-~p~a~~~~~~~al~~g~~v---------------------VigTTG~~~e--~~~~L~~~a~~~~i~vv~a~N~SiG  168 (303)
                      .+ -|.. .+.+..|.++|+++                     +||-||-+-.  -..-|..+-++.+.......|+...
T Consensus        81 Spgi~~~-~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~p  159 (473)
T PRK00141         81 SPGWRPD-SPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNIGVP  159 (473)
T ss_pred             CCCCCCC-CHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEeccCChh
Confidence            33 1222 23344555555533                     4455654311  1223444445555566677785444


Q ss_pred             HHHHHHHHHHhccCCCcEEEEEc
Q 022057          169 SILLQQAAISASFHYKNVEIVES  191 (303)
Q Consensus       169 v~ll~~~a~~~~~~~~dieIiE~  191 (303)
                      ...  .+.   .....|+-++|.
T Consensus       160 ~~~--~l~---~~~~~~~~V~E~  177 (473)
T PRK00141        160 VSA--ALV---AQPRIDVLVAEL  177 (473)
T ss_pred             HHH--HHh---cCCCCCEEEEec
Confidence            331  111   112345667776

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=94.50  E-value=0.36  Score=46.40  Aligned_cols=96  Identities=15%  Similarity=0.142  Sum_probs=64.0

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcc---hhhhhcCCCC-----CCeeecCCHHHHHhccccCC
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---IGMVCDMEQP-----LEIPVMSDLTMVLGSISQSK  105 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d---~~~~~g~~~~-----~gv~v~~dl~~~l~~~~~~~  105 (303)
                      ++++|.|.|++|-+|+.+++.++ ..|.++.|.+..+..-+.   +.++-+.++.     -++.-++++++++      .
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL-~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai------~   77 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLL-SRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAI------D   77 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHH-hCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHH------h
Confidence            46899999999999999999988 579999998875421011   1122121111     1223356788888      4


Q ss_pred             CccEEEEcCCc-----------------hhHHHHHHHHHHcC--CCeEEe
Q 022057          106 ARAVVIDFTDA-----------------STVYDNVKQATAFG--MRSVVY  136 (303)
Q Consensus       106 ~~DVvIDfT~p-----------------~a~~~~~~~al~~g--~~vVig  136 (303)
                      ++|.|+-..+|                 ..+...++.|.+..  +++|.-
T Consensus        78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~T  127 (327)
T KOG1502|consen   78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYT  127 (327)
T ss_pred             CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEe
Confidence            79999875543                 13355778888888  777754

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=94.49  E-value=0.28  Score=44.90  Aligned_cols=31  Identities=29%  Similarity=0.361  Sum_probs=25.3

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ||.|+|+ |.+|..+++.+.. .++.=.-++|.
T Consensus         1 kVlvvG~-GGlG~eilk~La~-~Gvg~i~ivD~   31 (234)
T cd01484           1 KVLLVGA-GGIGCELLKNLAL-MGFGQIHVIDM   31 (234)
T ss_pred             CEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence            6899998 9999999999874 56666667774

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>TIGR00936 ahcY adenosylhomocysteinase

Probab=94.46  E-value=0.38  Score=47.64  Aligned_cols=84  Identities=13%  Similarity=0.078  Sum_probs=50.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .-+|+|+|+ |.+|+.+++.+. .-+++++. +|.+.. + ..+..    ..|..+ .++++++      ..+|++|++|
T Consensus       195 Gk~VvViG~-G~IG~~vA~~ak-~~Ga~ViV-~d~dp~-r-~~~A~----~~G~~v-~~leeal------~~aDVVItaT  258 (406)
T TIGR00936       195 GKTVVVAGY-GWCGKGIAMRAR-GMGARVIV-TEVDPI-R-ALEAA----MDGFRV-MTMEEAA------KIGDIFITAT  258 (406)
T ss_pred             cCEEEEECC-CHHHHHHHHHHh-hCcCEEEE-EeCChh-h-HHHHH----hcCCEe-CCHHHHH------hcCCEEEECC
Confidence            468999998 999999999777 45888654 654321 1 11111    223333 2456776      3689999988


Q ss_pred             CchhHHH-HHHHHHHcCCCeE
Q 022057          115 DASTVYD-NVKQATAFGMRSV  134 (303)
Q Consensus       115 ~p~a~~~-~~~~al~~g~~vV  134 (303)
                      ......+ .....++.|.-++
T Consensus       259 G~~~vI~~~~~~~mK~Gaili  279 (406)
T TIGR00936       259 GNKDVIRGEHFENMKDGAIVA  279 (406)
T ss_pred             CCHHHHHHHHHhcCCCCcEEE
Confidence            5444333 2444455554443

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK05865 hypothetical protein; Provisional

Probab=94.46  E-value=0.3  Score=52.73  Aligned_cols=111  Identities=14%  Similarity=0.203  Sum_probs=60.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |||.|.|++|.+|+.+++.+.+ .+.++++......  .....-... -..++.-.+++++++      .++|+||.+..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~-~G~~Vv~l~R~~~--~~~~~~v~~-v~gDL~D~~~l~~al------~~vD~VVHlAa   70 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLS-QGHEVVGIARHRP--DSWPSSADF-IAADIRDATAVESAM------TGADVVAHCAW   70 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CcCEEEEEECCch--hhcccCceE-EEeeCCCHHHHHHHH------hCCCEEEECCC
Confidence            4899999999999999998875 5788877543211  000000000 000111112344455      36999999863


Q ss_pred             c---------hhHHHHHHHHHHcCC-CeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057          116 A---------STVYDNVKQATAFGM-RSVVYVPHIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus       116 p---------~a~~~~~~~al~~g~-~vVigTTG~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      .         ......++.+.++|+ .+|.-.|.. .   ...++++++.+++++
T Consensus        71 ~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~-K---~aaE~ll~~~gl~~v  121 (854)
T PRK05865         71 VRGRNDHINIDGTANVLKAMAETGTGRIVFTSSGH-Q---PRVEQMLADCGLEWV  121 (854)
T ss_pred             cccchHHHHHHHHHHHHHHHHHcCCCeEEEECCcH-H---HHHHHHHHHcCCCEE
Confidence            2         223455667777776 444333332 2   234445555666554

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.39  E-value=0.3  Score=45.71  Aligned_cols=121  Identities=15%  Similarity=0.214  Sum_probs=63.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhh-hhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGM-VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~-~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ..+|.|+|+ |.+|..+++.+.. .++.=+-++|.+.. ..++.. +....+..|-+-..-+.+-+.+    -+|++-|.
T Consensus        30 ~s~VlVvG~-GGVGs~vae~Lar-~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~----INP~~~V~  103 (268)
T PRK15116         30 DAHICVVGI-GGVGSWAAEALAR-TGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQ----INPECRVT  103 (268)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHH-cCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHh----HCCCcEEE
Confidence            468999998 9999999999884 45444456664311 001110 0000001111111112222222    35555443


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEc
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA  162 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a  162 (303)
                      .-......++....+..+.++|+-+.+-- .....|.++|+++++|++.+
T Consensus       104 ~i~~~i~~e~~~~ll~~~~D~VIdaiD~~-~~k~~L~~~c~~~~ip~I~~  152 (268)
T PRK15116        104 VVDDFITPDNVAEYMSAGFSYVIDAIDSV-RPKAALIAYCRRNKIPLVTT  152 (268)
T ss_pred             EEecccChhhHHHHhcCCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEE
Confidence            21111113344444455788888877642 33456888899999998754

>PRK05086 malate dehydrogenase; Provisional

Probab=94.39  E-value=0.44  Score=45.37  Aligned_cols=99  Identities=17%  Similarity=0.127  Sum_probs=53.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHh-cCCcEEEEEEecCCCCc-chhhhhcCCCCCCeee--cCCHHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGE-DIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~-d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |||+|+|++|++|+.++..+.. .+....+..+|.+.... .+-++........+..  .+++.+.+      .++|+||
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l------~~~DiVI   74 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPAL------EGADVVL   74 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHc------CCCCEEE
Confidence            6999999999999999988754 33434445566532110 0001111000112221  34655555      4799999


Q ss_pred             EcCC----ch------------hHHHHHHHHHHcCCC-eEEeCCCC
Q 022057          112 DFTD----AS------------TVYDNVKQATAFGMR-SVVYVPHI  140 (303)
Q Consensus       112 DfT~----p~------------a~~~~~~~al~~g~~-vVigTTG~  140 (303)
                      .+.-    |.            ...+.++...+++.+ +|+=.|..
T Consensus        75 itaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP  120 (312)
T PRK05086         75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP  120 (312)
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            7642    21            344556666667644 44434433

>PLN02477 glutamate dehydrogenase

Probab=94.37  E-value=0.3  Score=48.40  Aligned_cols=116  Identities=18%  Similarity=0.204  Sum_probs=72.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCC------CC-CeeecCCHHHHHhccc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ------PL-EIPVMSDLTMVLGSIS  102 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~~------~~-gv~v~~dl~~~l~~~~  102 (303)
                      -.||+|.|+ |++|+..++.+. +.+..|+++.|.+     ..|-|..++.....      .+ +... -+.++++.   
T Consensus       206 g~~VaIqGf-GnVG~~~A~~L~-e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~-i~~~e~l~---  279 (410)
T PLN02477        206 GQTFVIQGF-GNVGSWAAQLIH-EKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDP-IDPDDILV---  279 (410)
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceE-ecCcccee---
Confidence            378999997 999999999876 5789999999853     34666655431100      11 1111 13355654   


Q ss_pred             cCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI  167 (303)
Q Consensus       103 ~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G-~~~e~~~~L~~~a~~~~i~vv~a~N~Si  167 (303)
                        .++||+|=+...... .+++.   +-+..+|+|-. + ++++..+.|    +++  .+++.|-+..
T Consensus       280 --~~~DvliP~Al~~~I~~~na~---~i~ak~I~egAN~p~t~ea~~~L----~~r--GI~~~PD~~a  336 (410)
T PLN02477        280 --EPCDVLIPAALGGVINKENAA---DVKAKFIVEAANHPTDPEADEIL----RKK--GVVVLPDIYA  336 (410)
T ss_pred             --ccccEEeeccccccCCHhHHH---HcCCcEEEeCCCCCCCHHHHHHH----HHC--CcEEEChHHh
Confidence              589999976644433 44554   46899999876 3 555432222    343  4566676654

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=94.36  E-value=0.089  Score=50.32  Aligned_cols=89  Identities=18%  Similarity=0.132  Sum_probs=58.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCCe--eecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~gv--~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ..+++|+|+ |.+|+.+++.+....+++-+.+++++.  ..+..++.. ...+++  ..++++++++      .++|+||
T Consensus       129 ~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~--~~a~~~a~~~~~~~g~~v~~~~~~~~av------~~aDiVv  199 (326)
T TIGR02992       129 SSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDS--AKAEALALQLSSLLGIDVTAATDPRAAM------SGADIIV  199 (326)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCH--HHHHHHHHHHHhhcCceEEEeCCHHHHh------ccCCEEE
Confidence            358999998 999999999998667788888888753  222222210 012233  4478899888      4799999


Q ss_pred             EcCCchhHHHHH-HHHHHcCCCeE
Q 022057          112 DFTDASTVYDNV-KQATAFGMRSV  134 (303)
Q Consensus       112 DfT~p~a~~~~~-~~al~~g~~vV  134 (303)
                      -+|+...  +.+ ...++.|.++.
T Consensus       200 taT~s~~--p~i~~~~l~~g~~i~  221 (326)
T TIGR02992       200 TTTPSET--PILHAEWLEPGQHVT  221 (326)
T ss_pred             EecCCCC--cEecHHHcCCCcEEE
Confidence            7774321  222 24467777665

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PLN00106 malate dehydrogenase

Probab=94.35  E-value=0.24  Score=47.57  Aligned_cols=44  Identities=18%  Similarity=0.215  Sum_probs=30.6

Q ss_pred             eecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        27 ~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      |-..-.-.+.||+|+|++|++|..++-.+...+-..=...+|.+
T Consensus        10 ~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~   53 (323)
T PLN00106         10 CRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIA   53 (323)
T ss_pred             cccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecC
Confidence            33333344579999998899999999988865544333457753

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.33  E-value=0.97  Score=44.56  Aligned_cols=139  Identities=17%  Similarity=0.158  Sum_probs=74.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCC--cchhhhhcCCCCCCeeec--CCHHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG--EDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g--~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVvI  111 (303)
                      .+|.|+|+ |++|+..++.+. ..+.++++ .|.....  ....++    .+.|+.++  .+..+++.     ..+|+||
T Consensus         6 k~v~v~G~-g~~G~s~a~~l~-~~G~~V~~-~d~~~~~~~~~~~~l----~~~g~~~~~~~~~~~~~~-----~~~d~vV   73 (447)
T PRK02472          6 KKVLVLGL-AKSGYAAAKLLH-KLGANVTV-NDGKPFSENPEAQEL----LEEGIKVICGSHPLELLD-----EDFDLMV   73 (447)
T ss_pred             CEEEEEee-CHHHHHHHHHHH-HCCCEEEE-EcCCCccchhHHHHH----HhcCCEEEeCCCCHHHhc-----CcCCEEE
Confidence            47999998 889999988776 57888776 4643210  111222    13455543  23344442     2489887


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeE--------------EeCCCCCH--HHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH
Q 022057          112 DFTDASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vV--------------igTTG~~~--e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~  175 (303)
                      -...-....+.+..|.+.|+|++              |+-||-.-  --...|..+-+..+.......|  +|..+.. +
T Consensus        74 ~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gn--ig~p~~~-~  150 (447)
T PRK02472         74 KNPGIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGN--IGYPASE-V  150 (447)
T ss_pred             ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcc--cChhhHH-H
Confidence            54421222355666777777765              44455321  1122344445555555567777  4444322 1


Q ss_pred             HHHhccCCCcEEEEEc
Q 022057          176 AISASFHYKNVEIVES  191 (303)
Q Consensus       176 a~~~~~~~~dieIiE~  191 (303)
                      .....  ..|+-|+|.
T Consensus       151 ~~~~~--~~~~~V~E~  164 (447)
T PRK02472        151 AQKAT--ADDTLVMEL  164 (447)
T ss_pred             HhcCC--CCCEEEEEc
Confidence            11111  246667776

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.32  E-value=0.8  Score=45.66  Aligned_cols=138  Identities=14%  Similarity=0.140  Sum_probs=73.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCc--ch-hhhhcCCCCCCeeec--CCHHHHHhccccCCCccEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DI-GMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~--d~-~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVv  110 (303)
                      .||+|+|. |+.|+.+++.+. ..+.++.+ .|......  +. ..+    .+.|+.++  .+..+.+      .++|+|
T Consensus        15 ~~i~v~G~-G~sG~a~a~~L~-~~G~~V~~-~D~~~~~~~~~~~~~l----~~~gi~~~~~~~~~~~~------~~~dlV   81 (458)
T PRK01710         15 KKVAVVGI-GVSNIPLIKFLV-KLGAKVTA-FDKKSEEELGEVSNEL----KELGVKLVLGENYLDKL------DGFDVI   81 (458)
T ss_pred             CeEEEEcc-cHHHHHHHHHHH-HCCCEEEE-ECCCCCccchHHHHHH----HhCCCEEEeCCCChHHh------ccCCEE
Confidence            58999997 999999998776 56777654 77432111  10 112    23455553  2223444      368988


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCeE--------------EeCCCCCHH--HHHHHHHHhhhcCCeEEEcCCCcHHHHHHHH
Q 022057          111 IDFTDASTVYDNVKQATAFGMRSV--------------VYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGSILLQQ  174 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~vV--------------igTTG~~~e--~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~  174 (303)
                      |-...-....+.+..|.+.|+|++              ||-||-.-.  -...|..+-+..+.......|  +|+.++..
T Consensus        82 V~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gn--iG~p~~~~  159 (458)
T PRK01710         82 FKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGN--IGTPLFSN  159 (458)
T ss_pred             EECCCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCc--cChhHHHH
Confidence            754322223455666666666655              333443210  112233344445555556677  56655433


Q ss_pred             HHHHhccCCCcEEEEEc
Q 022057          175 AAISASFHYKNVEIVES  191 (303)
Q Consensus       175 ~a~~~~~~~~dieIiE~  191 (303)
                      +. ...  ..|+-|+|+
T Consensus       160 ~~-~~~--~~~~~VlE~  173 (458)
T PRK01710        160 IE-EIK--EEDKVVLEL  173 (458)
T ss_pred             Hh-hCC--CCCEEEEEc
Confidence            22 121  246667775

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=94.29  E-value=0.18  Score=48.09  Aligned_cols=72  Identities=21%  Similarity=0.209  Sum_probs=43.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC---CCc--chhhhhcCCCCCCeeecCCHHHHHhccccCCCccE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGE--DIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~--d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (303)
                      .+||+|+|+ |++|..++-.+...+-..=+..+|.+.   .|.  |+...........+..+.|++++       .++|+
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-------~~adi   74 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-------ANSKV   74 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-------CCCCE
Confidence            369999998 999999999887655443344678532   111  22211111011234445788874       58999


Q ss_pred             EEEcC
Q 022057          110 VIDFT  114 (303)
Q Consensus       110 vIDfT  114 (303)
                      ||-+.
T Consensus        75 vvita   79 (312)
T cd05293          75 VIVTA   79 (312)
T ss_pred             EEECC
Confidence            98743

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=94.22  E-value=0.42  Score=44.71  Aligned_cols=87  Identities=15%  Similarity=0.176  Sum_probs=56.3

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE-EE
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV-VI  111 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV-vI  111 (303)
                      .++.++.|.|||+++|+++++.++ ..++.|+-+..+.   ..+.+++           .++++...     ..+++ .+
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA-~~g~~liLvaR~~---~kL~~la-----------~~l~~~~~-----v~v~vi~~   63 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLA-RRGYNLILVARRE---DKLEALA-----------KELEDKTG-----VEVEVIPA   63 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCcH---HHHHHHH-----------HHHHHhhC-----ceEEEEEC
Confidence            345689999999999999999888 4677777654332   1112221           11121110     13443 56


Q ss_pred             EcCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          112 DFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      |.|.|+............  .+.++|=.-|
T Consensus        64 DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG   93 (265)
T COG0300          64 DLSDPEALERLEDELKERGGPIDVLVNNAG   93 (265)
T ss_pred             cCCChhHHHHHHHHHHhcCCcccEEEECCC
Confidence            899999888887777776  6888876554

>PRK14851 hypothetical protein; Provisional

Probab=94.21  E-value=0.16  Score=53.40  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=24.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      ..||+|+|+ |.+|..+++.+.. .|+.=.-++|
T Consensus        43 ~~~VlIvG~-GGlGs~va~~Lar-~GVG~l~LvD   74 (679)
T PRK14851         43 EAKVAIPGM-GGVGGVHLITMVR-TGIGRFHIAD   74 (679)
T ss_pred             cCeEEEECc-CHHHHHHHHHHHH-hCCCeEEEEc
Confidence            468999998 9999999998874 4554444555

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.17  E-value=0.44  Score=45.03  Aligned_cols=96  Identities=10%  Similarity=0.034  Sum_probs=51.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-----CCC---CeeecCCHHHHHhccccCCC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-----QPL---EIPVMSDLTMVLGSISQSKA  106 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-----~~~---gv~v~~dl~~~l~~~~~~~~  106 (303)
                      +|||+|+|+ |.||..++..+.+ .+.++.-+....   .+.-...|+.     ...   .++++++.++ .      ..
T Consensus         5 ~m~I~IiG~-GaiG~~lA~~L~~-~g~~V~~~~r~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~------~~   72 (313)
T PRK06249          5 TPRIGIIGT-GAIGGFYGAMLAR-AGFDVHFLLRSD---YEAVRENGLQVDSVHGDFHLPPVQAYRSAED-M------PP   72 (313)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHH-CCCeEEEEEeCC---HHHHHhCCeEEEeCCCCeeecCceEEcchhh-c------CC
Confidence            479999998 9999999998875 466666443321   1110000100     000   1223344432 2      46


Q ss_pred             ccEEEEcCCchhHHHHH---HHHHHcCCCeEEeCCCCCH
Q 022057          107 RAVVIDFTDASTVYDNV---KQATAFGMRSVVYVPHIQL  142 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~---~~al~~g~~vVigTTG~~~  142 (303)
                      +|++|-++....+.+.+   ...+..+..+|.-.-|+..
T Consensus        73 ~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~  111 (313)
T PRK06249         73 CDWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGV  111 (313)
T ss_pred             CCEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCc
Confidence            89998776544444333   3334344445554448764

>PRK06436 glycerate dehydrogenase; Provisional

Probab=94.11  E-value=0.36  Score=45.86  Aligned_cols=59  Identities=19%  Similarity=0.170  Sum_probs=41.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      -.+|+|+|. |+||+.+++.+. .-++++.+ +|+..  .+          .++ ..+.++++++.      ++|+|+-.
T Consensus       122 gktvgIiG~-G~IG~~vA~~l~-afG~~V~~-~~r~~--~~----------~~~~~~~~~l~ell~------~aDiv~~~  180 (303)
T PRK06436        122 NKSLGILGY-GGIGRRVALLAK-AFGMNIYA-YTRSY--VN----------DGISSIYMEPEDIMK------KSDFVLIS  180 (303)
T ss_pred             CCEEEEECc-CHHHHHHHHHHH-HCCCEEEE-ECCCC--cc----------cCcccccCCHHHHHh------hCCEEEEC
Confidence            368999997 999999999665 45898875 56532  11          112 12568999984      79998865


Q ss_pred             C
Q 022057          114 T  114 (303)
Q Consensus       114 T  114 (303)
                      .
T Consensus       181 l  181 (303)
T PRK06436        181 L  181 (303)
T ss_pred             C
Confidence            4

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=94.07  E-value=0.4  Score=43.31  Aligned_cols=87  Identities=15%  Similarity=0.096  Sum_probs=50.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      ||+++|+|. |+||..++..+. ..++|++-.-.+.   .+..+.+-  +..+..+ -.+.+++.      ...|||+-.
T Consensus         1 m~~~~i~Gt-GniG~alA~~~a-~ag~eV~igs~r~---~~~~~a~a--~~l~~~i~~~~~~dA~------~~aDVVvLA   67 (211)
T COG2085           1 MMIIAIIGT-GNIGSALALRLA-KAGHEVIIGSSRG---PKALAAAA--AALGPLITGGSNEDAA------ALADVVVLA   67 (211)
T ss_pred             CcEEEEecc-ChHHHHHHHHHH-hCCCeEEEecCCC---hhHHHHHH--HhhccccccCChHHHH------hcCCEEEEe
Confidence            688999996 999999999887 4678877543322   11111110  1122222 23455555      368999965


Q ss_pred             CCchhHHHHHHHHHH-c-CCCeE
Q 022057          114 TDASTVYDNVKQATA-F-GMRSV  134 (303)
Q Consensus       114 T~p~a~~~~~~~al~-~-g~~vV  134 (303)
                      .+-+...+.+..... . ||=||
T Consensus        68 VP~~a~~~v~~~l~~~~~~KIvI   90 (211)
T COG2085          68 VPFEAIPDVLAELRDALGGKIVI   90 (211)
T ss_pred             ccHHHHHhHHHHHHHHhCCeEEE
Confidence            565666666665543 3 34444

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.05  E-value=0.2  Score=50.88  Aligned_cols=32  Identities=22%  Similarity=0.340  Sum_probs=26.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      .||+|+|+ |.||+.|+..+. ..+++++ ++|.+
T Consensus         6 ~kV~VIGa-G~MG~gIA~~la-~aG~~V~-l~d~~   37 (503)
T TIGR02279         6 VTVAVIGA-GAMGAGIAQVAA-SAGHQVL-LYDIR   37 (503)
T ss_pred             cEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEeCC
Confidence            57999998 999999999887 4588887 46753

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional

Probab=94.03  E-value=0.72  Score=46.49  Aligned_cols=88  Identities=18%  Similarity=0.257  Sum_probs=56.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      .++.|+|+ |.-|+.+++.+.+++  +++++|.+|.+..+   .      ...|+|+..+.+++... ......|++|-.
T Consensus       147 rrvLIIGa-G~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~---~------~i~gvPVlg~~d~l~~~-~~~~~v~vIIAi  215 (476)
T PRK15204        147 KKTIILGS-GQNARGAYSALQSEEMMGFDVIAFFDTDASD---A------EINMLPVIKDTEIIWDL-NRTGDVHYILAY  215 (476)
T ss_pred             CeEEEEEC-CHHHHHHHHHHHhCccCCcEEEEEEcCCccc---c------ccCCCcccCCHHHHHHH-HHhCCCcEEEEe
Confidence            57999998 999999999998765  78999999864311   1      12467777665433110 011356765543


Q ss_pred             CC--chhHHHHHHHHHHcCCCeE
Q 022057          114 TD--ASTVYDNVKQATAFGMRSV  134 (303)
Q Consensus       114 T~--p~a~~~~~~~al~~g~~vV  134 (303)
                      ..  .+...+.+..+.+.|+.-|
T Consensus       216 p~~~~~~r~~il~~l~~~gv~~V  238 (476)
T PRK15204        216 EYTELEKTHFWLRELSKHHCRSV  238 (476)
T ss_pred             CcCcHHHHHHHHHHHhhcCCeEE
Confidence            32  2344577888888888533

>PRK08291 ectoine utilization protein EutC; Validated

Probab=94.01  E-value=0.14  Score=49.07  Aligned_cols=88  Identities=16%  Similarity=0.177  Sum_probs=56.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCe--eecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      .+++|+|+ |.+|+.++..+....+++-+.+++++.  ..+..++. +.+.+++  ..++|+++++.      ++|+||-
T Consensus       133 ~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~--~~a~~l~~~~~~~~g~~v~~~~d~~~al~------~aDiVi~  203 (330)
T PRK08291        133 SRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDA--AKAEAYAADLRAELGIPVTVARDVHEAVA------GADIIVT  203 (330)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHhhccCceEEEeCCHHHHHc------cCCEEEE
Confidence            58999998 999999999888656778888888652  22222221 0012344  34789999884      7899987


Q ss_pred             cCCchhHHHHHH-HHHHcCCCeE
Q 022057          113 FTDASTVYDNVK-QATAFGMRSV  134 (303)
Q Consensus       113 fT~p~a~~~~~~-~al~~g~~vV  134 (303)
                      .|+..  .+.+. ..++.|.++.
T Consensus       204 aT~s~--~p~i~~~~l~~g~~v~  224 (330)
T PRK08291        204 TTPSE--EPILKAEWLHPGLHVT  224 (330)
T ss_pred             eeCCC--CcEecHHHcCCCceEE
Confidence            76432  12332 2356777654

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=94.01  E-value=0.17  Score=43.94  Aligned_cols=64  Identities=25%  Similarity=0.236  Sum_probs=42.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|+ |++|+.+++.+. .=++++.+ +|+..  .+....    ...++ -+.++++++.      .+|+|+-..
T Consensus        36 g~tvgIiG~-G~IG~~vA~~l~-~fG~~V~~-~d~~~--~~~~~~----~~~~~-~~~~l~ell~------~aDiv~~~~   99 (178)
T PF02826_consen   36 GKTVGIIGY-GRIGRAVARRLK-AFGMRVIG-YDRSP--KPEEGA----DEFGV-EYVSLDELLA------QADIVSLHL   99 (178)
T ss_dssp             TSEEEEEST-SHHHHHHHHHHH-HTT-EEEE-EESSC--HHHHHH----HHTTE-EESSHHHHHH------H-SEEEE-S
T ss_pred             CCEEEEEEE-cCCcCeEeeeee-cCCceeEE-ecccC--Chhhhc----ccccc-eeeehhhhcc------hhhhhhhhh
Confidence            368999998 999999999887 56888776 66542  111101    12334 3568999995      699988654

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=93.97  E-value=0.23  Score=45.97  Aligned_cols=127  Identities=17%  Similarity=0.206  Sum_probs=73.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCCCCCCeee-----cCCHHHHHhccccCCCccE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPV-----MSDLTMVLGSISQSKARAV  109 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~-~~~g~~~~~gv~v-----~~dl~~~l~~~~~~~~~DV  109 (303)
                      |||.|.|.| .=|+.+++.+.+... -++.++ .+. |.+.. ...   ....+.+     .+.+.+.+.+    .++|.
T Consensus         1 m~ILvlgGT-tE~r~la~~L~~~g~-v~~sv~-t~~-g~~~~~~~~---~~~~v~~G~lg~~~~l~~~l~~----~~i~~   69 (249)
T PF02571_consen    1 MKILVLGGT-TEGRKLAERLAEAGY-VIVSVA-TSY-GGELLKPEL---PGLEVRVGRLGDEEGLAEFLRE----NGIDA   69 (249)
T ss_pred             CEEEEEech-HHHHHHHHHHHhcCC-EEEEEE-hhh-hHhhhcccc---CCceEEECCCCCHHHHHHHHHh----CCCcE
Confidence            689999985 778999998886554 222222 211 11111 000   0011111     2345555553    78999


Q ss_pred             EEEcCCchhH---HHHHHHHHHcCCCeE-EeCCCCC---------HHHHHHHHHHhhhcC-CeEEEcCCCcHHHHHHHHH
Q 022057          110 VIDFTDASTV---YDNVKQATAFGMRSV-VYVPHIQ---------LETVSALSAFCDKAS-MGCLIAPTLSIGSILLQQA  175 (303)
Q Consensus       110 vIDfT~p~a~---~~~~~~al~~g~~vV-igTTG~~---------~e~~~~L~~~a~~~~-i~vv~a~N~SiGv~ll~~~  175 (303)
                      |||.|||-+.   ......|.+.|+|.+ ..=+.|.         -+..++..+++.+.+ -.+++    .+|..-|..+
T Consensus        70 vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~~~~~ifl----ttGsk~L~~f  145 (249)
T PF02571_consen   70 VIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKELGGGRIFL----TTGSKNLPPF  145 (249)
T ss_pred             EEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhcCCCCEEE----eCchhhHHHH
Confidence            9999999654   556678899999988 2222221         122333444443323 56665    8999888888


Q ss_pred             HH
Q 022057          176 AI  177 (303)
Q Consensus       176 a~  177 (303)
                      ..
T Consensus       146 ~~  147 (249)
T PF02571_consen  146 VP  147 (249)
T ss_pred             hh
Confidence            65

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=93.93  E-value=0.51  Score=46.94  Aligned_cols=32  Identities=25%  Similarity=0.425  Sum_probs=26.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      +|||+|+|. |.||..++..+.+  ++++++ +|.+
T Consensus         6 ~mkI~vIGl-GyvGlpmA~~la~--~~~V~g-~D~~   37 (425)
T PRK15182          6 EVKIAIIGL-GYVGLPLAVEFGK--SRQVVG-FDVN   37 (425)
T ss_pred             CCeEEEECc-CcchHHHHHHHhc--CCEEEE-EeCC
Confidence            479999996 9999999998764  588876 7753

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=93.92  E-value=0.15  Score=47.56  Aligned_cols=126  Identities=17%  Similarity=0.117  Sum_probs=64.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-eeecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g-v~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      ..++.|+|+ |++|+.++..+.. .++.=+-+++++.  ..+..++....... +.+..+..+.+      .++|+||..
T Consensus       123 ~k~vlVlGa-Gg~a~ai~~aL~~-~g~~~V~v~~R~~--~~a~~l~~~~~~~~~~~~~~~~~~~~------~~~DivIna  192 (278)
T PRK00258        123 GKRILILGA-GGAARAVILPLLD-LGVAEITIVNRTV--ERAEELAKLFGALGKAELDLELQEEL------ADFDLIINA  192 (278)
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHH-cCCCEEEEEeCCH--HHHHHHHHHhhhccceeecccchhcc------ccCCEEEEC
Confidence            358999998 9999999999885 4533344566542  22222221000111 22211333444      478999988


Q ss_pred             CCchhHH-----HHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHH-HHHHHHHHh
Q 022057          114 TDASTVY-----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI-LLQQAAISA  179 (303)
Q Consensus       114 T~p~a~~-----~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~-ll~~~a~~~  179 (303)
                      |+.....     +.....+..+ .+|+-. -+++.. -.+.+.|++.|.+++-      |.. |+.|.+.++
T Consensus       193 Tp~g~~~~~~~~~~~~~~l~~~-~~v~Di-vY~P~~-T~ll~~A~~~G~~~~~------G~~Ml~~Qa~~~f  255 (278)
T PRK00258        193 TSAGMSGELPLPPLPLSLLRPG-TIVYDM-IYGPLP-TPFLAWAKAQGARTID------GLGMLVHQAAEAF  255 (278)
T ss_pred             CcCCCCCCCCCCCCCHHHcCCC-CEEEEe-ecCCCC-CHHHHHHHHCcCeecC------CHHHHHHHHHHHH
Confidence            8533211     1112333333 333321 222222 3477778888887552      443 345555444

>PRK14030 glutamate dehydrogenase; Provisional

Probab=93.92  E-value=0.34  Score=48.52  Aligned_cols=120  Identities=13%  Similarity=0.093  Sum_probs=76.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhh---hcCC-----------CCC-CeeecCCH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMV---CDME-----------QPL-EIPVMSDL   94 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~---~g~~-----------~~~-gv~v~~dl   94 (303)
                      -.||+|-|+ |++|+..++.+. +.+..|+++.|+     ++.|-|...+   ....           ..+ +.... +.
T Consensus       228 g~~vaIQGf-GnVG~~aA~~L~-e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~  304 (445)
T PRK14030        228 GKTVAISGF-GNVAWGAATKAT-ELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AG  304 (445)
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CC
Confidence            369999997 999999999886 579999998774     2335554431   1000           011 22222 23


Q ss_pred             HHHHhccccCCCccEEEEcCCchh-HHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057           95 TMVLGSISQSKARAVVIDFTDAST-VYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (303)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDfT~p~a-~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~Si  167 (303)
                      ++++.     .++||+|=+..... ..+++....+++..+|+|-. +.+..+..++  + +++  .+++.|-+..
T Consensus       305 ~~~~~-----~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~i--L-~~r--GI~~vPD~~a  369 (445)
T PRK14030        305 KKPWE-----QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDK--F-IAA--KQLFAPGKAV  369 (445)
T ss_pred             cccee-----ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH--H-HHC--CCEEeCccee
Confidence            55554     58999997765444 47888888889999999976 4433232222  2 443  4566676643

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=93.88  E-value=0.5  Score=47.41  Aligned_cols=138  Identities=14%  Similarity=0.149  Sum_probs=83.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhh---hcCC-------CC-----CCeeecCCH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMV---CDME-------QP-----LEIPVMSDL   94 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~---~g~~-------~~-----~gv~v~~dl   94 (303)
                      -.+|+|-|+ |++|+..++.+. +.+..++++.|++     ..|-|..++   ....       ..     .+.... +.
T Consensus       237 Gk~VaVqG~-GnVg~~aa~~L~-e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~-~~  313 (454)
T PTZ00079        237 GKTVVVSGS-GNVAQYAVEKLL-QLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV-PG  313 (454)
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-CC
Confidence            369999997 999999999887 5799999999863     335554333   1000       00     022222 22


Q ss_pred             HHHHhccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCCeEEEcCCCcH---H
Q 022057           95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---G  168 (303)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G-~~~e~~~~L~~~a~~~~i~vv~a~N~Si---G  168 (303)
                      ++++.     .++||++=+...... .+++....+++..+|++-. + .+++.   .+-+ +++  .+++.|-+..   |
T Consensus       314 ~~~~~-----~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA---~~~L-~~~--GI~~~PD~~aNAGG  382 (454)
T PTZ00079        314 KKPWE-----VPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEA---THLF-KKN--GVIFCPGKAANAGG  382 (454)
T ss_pred             cCccc-----CCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHH---HHHH-HHC--CcEEEChhhhcCCC
Confidence            34443     589999977654444 7888888899999999876 3 44532   2222 343  4577676643   2


Q ss_pred             HHH-HHHHHHHhccCCCcE
Q 022057          169 SIL-LQQAAISASFHYKNV  186 (303)
Q Consensus       169 v~l-l~~~a~~~~~~~~di  186 (303)
                      |.+ -.+..+....+.|+.
T Consensus       383 V~vS~~E~~Qn~~~~~W~~  401 (454)
T PTZ00079        383 VAISGLEMSQNAARLQWTA  401 (454)
T ss_pred             eeeehHHhhhhhcccCCCH
Confidence            211 133344555555544

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=93.82  E-value=0.17  Score=50.59  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA   58 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~   58 (303)
                      ++||+|+|++|++|..++-.+...
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~  123 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASG  123 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhc
Confidence            499999998899999999988754

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=93.79  E-value=0.34  Score=46.57  Aligned_cols=61  Identities=16%  Similarity=0.173  Sum_probs=42.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      ++|+|+|+ |+||+.+++.+. .-++++++ +|+... .. ..        .+....++++++      .++|+|+...+
T Consensus       147 ~~VgIIG~-G~IG~~vA~~L~-~~G~~V~~-~d~~~~-~~-~~--------~~~~~~~l~ell------~~aDiVil~lP  207 (330)
T PRK12480        147 MTVAIIGT-GRIGAATAKIYA-GFGATITA-YDAYPN-KD-LD--------FLTYKDSVKEAI------KDADIISLHVP  207 (330)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCEEEE-EeCChh-Hh-hh--------hhhccCCHHHHH------hcCCEEEEeCC
Confidence            68999998 999999999887 46888875 565421 00 00        112345789998      47999986653

>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]

Probab=93.77  E-value=0.46  Score=46.24  Aligned_cols=97  Identities=16%  Similarity=0.151  Sum_probs=61.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCC----------C---------cchhhhhcCCCCCCeeec---
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV----------G---------EDIGMVCDMEQPLEIPVM---   91 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~----------g---------~d~~~~~g~~~~~gv~v~---   91 (303)
                      |.|+.|.|.||-+|..-.+.+.+.|+ +++++..-....          .         ....++-... + ++.++   
T Consensus         1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~~-~-~~~v~~G~   78 (385)
T COG0743           1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDLL-P-GTEVLVGE   78 (385)
T ss_pred             CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCcHHHHHHHHHHhCCceEEecChHHHHHHHhhc-c-CceEEecH
Confidence            57999999999999999999998887 689887652110          0         0000110000 0 12222   


Q ss_pred             CCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (303)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT  137 (303)
                      ..+.++..    ..++|+|+..-.-.+...-...++++|+.+-...
T Consensus        79 ~~l~e~a~----~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLAN  120 (385)
T COG0743          79 EGLCELAA----EDDADVVMNAIVGAAGLLPTLAAIKAGKTIALAN  120 (385)
T ss_pred             HHHHHHHh----cCCCCEEeehhhhhcccHHHHHHHHcCCceeecc
Confidence            23444443    2678988877666666666677888888887653

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=93.74  E-value=0.78  Score=41.41  Aligned_cols=33  Identities=21%  Similarity=0.401  Sum_probs=28.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      |+||.|+|++|.+|+.+++.+.+ .+.++++...
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~-~g~~V~~~~R   49 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLA-KGFAVKAGVR   49 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHh-CCCEEEEEec
Confidence            46999999999999999999875 5788887654

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=93.73  E-value=0.26  Score=47.07  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=25.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      |||+|+|++|++|..++-.+...+-..=+..+|.+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~   35 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV   35 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence            59999998899999999888755543323356653

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=93.72  E-value=0.31  Score=50.81  Aligned_cols=30  Identities=23%  Similarity=0.314  Sum_probs=25.1

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEE
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEV   63 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eL   63 (303)
                      .++|||.|.|++|-+|+.+++.+.+ .+.++
T Consensus       378 ~~~mkiLVtGa~G~iG~~l~~~L~~-~g~~v  407 (668)
T PLN02260        378 KPSLKFLIYGRTGWIGGLLGKLCEK-QGIAY  407 (668)
T ss_pred             CCCceEEEECCCchHHHHHHHHHHh-CCCeE
Confidence            3468999999999999999998875 46676

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=93.72  E-value=2.7  Score=39.70  Aligned_cols=33  Identities=12%  Similarity=0.213  Sum_probs=26.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~   69 (303)
                      .+|.|.|++|.+|+.+++.+.+.. ..+++. +++
T Consensus         5 k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~-~~r   38 (324)
T TIGR03589         5 KSILITGGTGSFGKAFISRLLENYNPKKIII-YSR   38 (324)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEE-EcC
Confidence            589999999999999999998753 356664 443

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.70  E-value=0.32  Score=48.28  Aligned_cols=82  Identities=11%  Similarity=0.144  Sum_probs=46.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      -+|+|+|+ |.+|+.+++.+. .-+++++. +|.+.  ... +.+   ...|+.+. ++++++      ..+|++|++|.
T Consensus       203 ktVvViG~-G~IG~~va~~ak-~~Ga~ViV-~d~d~--~R~-~~A---~~~G~~~~-~~~e~v------~~aDVVI~atG  266 (413)
T cd00401         203 KVAVVAGY-GDVGKGCAQSLR-GQGARVIV-TEVDP--ICA-LQA---AMEGYEVM-TMEEAV------KEGDIFVTTTG  266 (413)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-EECCh--hhH-HHH---HhcCCEEc-cHHHHH------cCCCEEEECCC
Confidence            58999998 999999999776 45777654 66542  111 111   12344322 345555      35777777764


Q ss_pred             chhHHH-HHHHHHHcCCCe
Q 022057          116 ASTVYD-NVKQATAFGMRS  133 (303)
Q Consensus       116 p~a~~~-~~~~al~~g~~v  133 (303)
                      ...... -...+++.|.-+
T Consensus       267 ~~~~i~~~~l~~mk~Ggil  285 (413)
T cd00401         267 NKDIITGEHFEQMKDGAIV  285 (413)
T ss_pred             CHHHHHHHHHhcCCCCcEE
Confidence            333322 223444444433

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.69  E-value=0.92  Score=35.44  Aligned_cols=83  Identities=19%  Similarity=0.266  Sum_probs=51.4

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC--
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT--  114 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT--  114 (303)
                      +|.|+|+.-++-..+-+.+. .-+.++... .++. +..             +-...++..+      .++|+||-+|  
T Consensus         1 ~vliVGG~~~~~~~~~~~~~-~~G~~~~~h-g~~~-~~~-------------~~~~~l~~~i------~~aD~VIv~t~~   58 (97)
T PF10087_consen    1 SVLIVGGREDRERRYKRILE-KYGGKLIHH-GRDG-GDE-------------KKASRLPSKI------KKADLVIVFTDY   58 (97)
T ss_pred             CEEEEcCCcccHHHHHHHHH-HcCCEEEEE-ecCC-CCc-------------cchhHHHHhc------CCCCEEEEEeCC
Confidence            58899943388888888666 467777765 2221 100             0001134455      4789988777  


Q ss_pred             -CchhHHHHHHHHHHcCCCeEEeC-CCCC
Q 022057          115 -DASTVYDNVKQATAFGMRSVVYV-PHIQ  141 (303)
Q Consensus       115 -~p~a~~~~~~~al~~g~~vVigT-TG~~  141 (303)
                       +.......-+.|.+.++|++.-. +|++
T Consensus        59 vsH~~~~~vk~~akk~~ip~~~~~~~~~~   87 (97)
T PF10087_consen   59 VSHNAMWKVKKAAKKYGIPIIYSRSRGVS   87 (97)
T ss_pred             cChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence             44555666677778888888776 4665

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=93.66  E-value=0.5  Score=45.36  Aligned_cols=63  Identities=25%  Similarity=0.233  Sum_probs=44.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ..|||+|+ |++|+.+++.++ .=+|++.+ +|+.. .++..      ...++.-..+++++++      .+|+++-..
T Consensus       143 kTvGIiG~-G~IG~~va~~l~-afgm~v~~-~d~~~-~~~~~------~~~~~~~~~~Ld~lL~------~sDiv~lh~  205 (324)
T COG0111         143 KTVGIIGL-GRIGRAVAKRLK-AFGMKVIG-YDPYS-PRERA------GVDGVVGVDSLDELLA------EADILTLHL  205 (324)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCeEEE-ECCCC-chhhh------ccccceecccHHHHHh------hCCEEEEcC
Confidence            58999998 999999999776 45899886 67621 12111      1234444678999995      799988554

>PRK14852 hypothetical protein; Provisional

Probab=93.64  E-value=0.34  Score=52.77  Aligned_cols=32  Identities=19%  Similarity=0.364  Sum_probs=25.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      ..||+|+|+ |+.|..+++.+.. .|+.=.-++|
T Consensus       332 ~srVlVvGl-GGlGs~ia~~LAr-aGVG~I~L~D  363 (989)
T PRK14852        332 RSRVAIAGL-GGVGGIHLMTLAR-TGIGNFNLAD  363 (989)
T ss_pred             cCcEEEECC-cHHHHHHHHHHHH-cCCCeEEEEc
Confidence            468999999 9999999998884 4554445565

>PTZ00117 malate dehydrogenase; Provisional

Probab=93.62  E-value=0.31  Score=46.55  Aligned_cols=71  Identities=17%  Similarity=0.206  Sum_probs=42.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC---CCc--chhhhhcC-CCCCCeeecCCHHHHHhccccCCCcc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGE--DIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKARA  108 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~--d~~~~~g~-~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (303)
                      .+||+|+|+ |.||..++..+....-.+ +..+|.+.   .|.  |....... +....+..++|++ .+      .++|
T Consensus         5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l------~~AD   75 (319)
T PTZ00117          5 RKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DI------KDSD   75 (319)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-Hh------CCCC
Confidence            369999998 999999999877543256 66788642   111  11111100 0112333457887 44      4899


Q ss_pred             EEEEcC
Q 022057          109 VVIDFT  114 (303)
Q Consensus       109 VvIDfT  114 (303)
                      +||...
T Consensus        76 iVVita   81 (319)
T PTZ00117         76 VVVITA   81 (319)
T ss_pred             EEEECC
Confidence            988654

>PRK06988 putative formyltransferase; Provisional

Probab=93.61  E-value=0.15  Score=48.67  Aligned_cols=72  Identities=17%  Similarity=0.316  Sum_probs=47.5

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC--CC----cchhhhhcCCCCCCeeecC--CH-----HHHHhc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VG----EDIGMVCDMEQPLEIPVMS--DL-----TMVLGS  100 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~--~g----~d~~~~~g~~~~~gv~v~~--dl-----~~~l~~  100 (303)
                      |||||+++|. +.+|....+.+.+ .++++++++..+.  .+    .+..+++   .+.++|++.  ++     .+.+. 
T Consensus         1 ~~mkIvf~Gs-~~~a~~~L~~L~~-~~~~i~~Vvt~~d~~~~~~~~~~v~~~A---~~~gip~~~~~~~~~~~~~~~l~-   74 (312)
T PRK06988          1 MKPRAVVFAY-HNVGVRCLQVLLA-RGVDVALVVTHEDNPTENIWFGSVAAVA---AEHGIPVITPADPNDPELRAAVA-   74 (312)
T ss_pred             CCcEEEEEeC-cHHHHHHHHHHHh-CCCCEEEEEcCCCCCccCcCCCHHHHHH---HHcCCcEEccccCCCHHHHHHHH-
Confidence            6789999995 9999999998875 5789998886421  11    1233444   356777743  22     22333 


Q ss_pred             cccCCCccEEEEcC
Q 022057          101 ISQSKARAVVIDFT  114 (303)
Q Consensus       101 ~~~~~~~DVvIDfT  114 (303)
                         ..++|++|-+.
T Consensus        75 ---~~~~Dliv~~~   85 (312)
T PRK06988         75 ---AAAPDFIFSFY   85 (312)
T ss_pred             ---hcCCCEEEEeh
Confidence               25899888765

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=93.61  E-value=0.14  Score=50.72  Aligned_cols=80  Identities=19%  Similarity=0.262  Sum_probs=48.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ..+|+|+|+ |.||+.+++.+.. .+.+-+-+++++.  ..+..++   ..++  +..+.++.+.+      .++|+||.
T Consensus       182 ~~~vlViGa-G~iG~~~a~~L~~-~G~~~V~v~~r~~--~ra~~la---~~~g~~~~~~~~~~~~l------~~aDvVI~  248 (423)
T PRK00045        182 GKKVLVIGA-GEMGELVAKHLAE-KGVRKITVANRTL--ERAEELA---EEFGGEAIPLDELPEAL------AEADIVIS  248 (423)
T ss_pred             CCEEEEECc-hHHHHHHHHHHHH-CCCCeEEEEeCCH--HHHHHHH---HHcCCcEeeHHHHHHHh------ccCCEEEE
Confidence            368999998 9999999998874 4664445566542  2222233   1222  22234555565      47899999


Q ss_pred             cCC-chhH--HHHHHHHH
Q 022057          113 FTD-ASTV--YDNVKQAT  127 (303)
Q Consensus       113 fT~-p~a~--~~~~~~al  127 (303)
                      +|. |+..  .+.+..++
T Consensus       249 aT~s~~~~i~~~~l~~~~  266 (423)
T PRK00045        249 STGAPHPIIGKGMVERAL  266 (423)
T ss_pred             CCCCCCcEEcHHHHHHHH
Confidence            884 3333  45555544

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=93.59  E-value=0.45  Score=47.37  Aligned_cols=33  Identities=27%  Similarity=0.460  Sum_probs=28.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      .|||.|.|++|-+|+.+++.+.+ .+.++++ +|+
T Consensus       120 ~mkILVTGatGFIGs~Lv~~Ll~-~G~~V~~-ldr  152 (436)
T PLN02166        120 RLRIVVTGGAGFVGSHLVDKLIG-RGDEVIV-IDN  152 (436)
T ss_pred             CCEEEEECCccHHHHHHHHHHHH-CCCEEEE-EeC
Confidence            47999999999999999999886 4788887 443

>PRK06223 malate dehydrogenase; Reviewed

Probab=93.49  E-value=0.25  Score=46.49  Aligned_cols=33  Identities=21%  Similarity=0.196  Sum_probs=25.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      |+||+|+|+ |.||..++..+....-.+|+ .+|.
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~-L~D~   34 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELGDVV-LFDI   34 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEE-EEEC
Confidence            579999998 99999999988754312655 4675

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.48  E-value=2.7  Score=41.58  Aligned_cols=142  Identities=15%  Similarity=0.159  Sum_probs=71.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecC-C-HHHHHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-D-LTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-d-l~~~l~~~~~~~~~DVvIDf  113 (303)
                      .+|.|+|. |++|..+++.+. ..+.++++ .|....-.....+-.  ...|+.++. . .++.+      .++|+||-.
T Consensus         6 ~~~~v~G~-g~~G~~~a~~l~-~~g~~v~~-~d~~~~~~~~~~l~~--~~~gi~~~~g~~~~~~~------~~~d~vv~s   74 (445)
T PRK04308          6 KKILVAGL-GGTGISMIAYLR-KNGAEVAA-YDAELKPERVAQIGK--MFDGLVFYTGRLKDALD------NGFDILALS   74 (445)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-EeCCCCchhHHHHhh--ccCCcEEEeCCCCHHHH------hCCCEEEEC
Confidence            58999998 999999988776 56788765 664321111111110  013555532 2 22233      368988854


Q ss_pred             CCchhHHHHHHHHHHcCCCeE-----------------EeCCCCCHH--HHHHHHHHhhhcCCeEEEcCCCcHHHHHHHH
Q 022057          114 TDASTVYDNVKQATAFGMRSV-----------------VYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGSILLQQ  174 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vV-----------------igTTG~~~e--~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~  174 (303)
                      +.-....+.++.|.++|+|++                 |+-||-+-.  -..-|..+-+..+.......|+  |..++..
T Consensus        75 pgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~Gni--G~~~~~~  152 (445)
T PRK04308         75 PGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNI--GTPVLEA  152 (445)
T ss_pred             CCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCc--cHHHHHH
Confidence            422222344555555555543                 344443211  1123344444455555666774  4433332


Q ss_pred             HHHHhccCCCcEEEEEc
Q 022057          175 AAISASFHYKNVEIVES  191 (303)
Q Consensus       175 ~a~~~~~~~~dieIiE~  191 (303)
                      +.... ....|+-|+|.
T Consensus       153 ~~~~~-~~~~d~~VlE~  168 (445)
T PRK04308        153 ELQRE-GKKADVWVLEL  168 (445)
T ss_pred             HHhhc-CCCCcEEEEEe
Confidence            22111 12356777776

>PTZ00325 malate dehydrogenase; Provisional

Probab=93.45  E-value=1  Score=43.23  Aligned_cols=37  Identities=19%  Similarity=0.210  Sum_probs=27.5

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ..|.||+|+|+.|++|+.++..+....-..-+..+|.
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            3477999999889999999998875544433345665

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=93.45  E-value=0.24  Score=49.07  Aligned_cols=87  Identities=18%  Similarity=0.198  Sum_probs=51.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eecCCHHHHHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      .+|+|+|+ |.||+.+++.+.. .++.-+-+++++.  ..+.+++.   ..+.  ..+.++.+.+      ..+|+||.+
T Consensus       181 ~~VlViGa-G~iG~~~a~~L~~-~G~~~V~v~~rs~--~ra~~la~---~~g~~~i~~~~l~~~l------~~aDvVi~a  247 (417)
T TIGR01035       181 KKALLIGA-GEMGELVAKHLLR-KGVGKILIANRTY--ERAEDLAK---ELGGEAVKFEDLEEYL------AEADIVISS  247 (417)
T ss_pred             CEEEEECC-hHHHHHHHHHHHH-CCCCEEEEEeCCH--HHHHHHHH---HcCCeEeeHHHHHHHH------hhCCEEEEC
Confidence            68999998 9999999998876 4633344566542  22222331   2221  1234566666      479999998


Q ss_pred             CC-chhH--HHHHHHHHHcC-CC-eEE
Q 022057          114 TD-ASTV--YDNVKQATAFG-MR-SVV  135 (303)
Q Consensus       114 T~-p~a~--~~~~~~al~~g-~~-vVi  135 (303)
                      |. |+..  .+.+..+...+ .| +++
T Consensus       248 T~s~~~ii~~e~l~~~~~~~~~~~~vi  274 (417)
T TIGR01035       248 TGAPHPIVSKEDVERALRERTRPLFII  274 (417)
T ss_pred             CCCCCceEcHHHHHHHHhcCCCCeEEE
Confidence            73 4433  45566554432 44 443

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=93.45  E-value=0.37  Score=41.87  Aligned_cols=149  Identities=12%  Similarity=0.131  Sum_probs=78.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .+|+|+|+ |..|+.++..+. +.+++++-......  .. -+.+   .+-|..++ +++|+..      .+|+|+-.++
T Consensus         5 k~IAViGy-GsQG~a~AlNLr-DSG~~V~Vglr~~s--~s-~~~A---~~~Gf~v~-~~~eAv~------~aDvV~~L~P   69 (165)
T PF07991_consen    5 KTIAVIGY-GSQGHAHALNLR-DSGVNVIVGLREGS--AS-WEKA---KADGFEVM-SVAEAVK------KADVVMLLLP   69 (165)
T ss_dssp             SEEEEES--SHHHHHHHHHHH-HCC-EEEEEE-TTC--HH-HHHH---HHTT-ECC-EHHHHHH------C-SEEEE-S-
T ss_pred             CEEEEECC-ChHHHHHHHHHH-hCCCCEEEEecCCC--cC-HHHH---HHCCCeec-cHHHHHh------hCCEEEEeCC
Confidence            58999998 999999999887 57888886665432  11 1111   13344443 5777774      7999886554


Q ss_pred             chhHH----HHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcEEEEEc
Q 022057          116 ASTVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES  191 (303)
Q Consensus       116 p~a~~----~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~  191 (303)
                      -+...    +.+.-.++-|.-++. ..||+- .+..|.   -..++-++..+-=+.|..+=..+.+  .+=.+-.--++ 
T Consensus        70 D~~q~~vy~~~I~p~l~~G~~L~f-ahGfni-~~~~i~---pp~~vdV~mvAPKgpG~~vR~~y~~--G~Gvp~l~AV~-  141 (165)
T PF07991_consen   70 DEVQPEVYEEEIAPNLKPGATLVF-AHGFNI-HYGLIK---PPKDVDVIMVAPKGPGHLVRREYVE--GRGVPALIAVH-  141 (165)
T ss_dssp             HHHHHHHHHHHHHHHS-TT-EEEE-SSSHHH-HCTTS------TTSEEEEEEESSSCHHHHHHHHC--CTS--EEEEEE-
T ss_pred             hHHHHHHHHHHHHhhCCCCCEEEe-CCcchh-hcCccc---CCCCCeEEEEecCCCChHHHHHHHc--CCCceEEEEEE-
Confidence            33333    444556677775553 468764 222222   2234666655555677755444442  11123222222 


Q ss_pred             cCCCCCCCcHHHHHHHHHHHh
Q 022057          192 RPNARDFPSPDATQIANNLSN  212 (303)
Q Consensus       192 Hh~K~DaPSGTA~~l~~~i~~  212 (303)
                          .| +||.|+.++-+++.
T Consensus       142 ----qD-~sg~A~~~ala~A~  157 (165)
T PF07991_consen  142 ----QD-ASGKAKELALAYAK  157 (165)
T ss_dssp             ----E--SSS-HHHHHHHHHH
T ss_pred             ----EC-CCchHHHHHHHHHH
Confidence                34 78999999988875

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PLN00203 glutamyl-tRNA reductase

Probab=93.43  E-value=0.21  Score=50.91  Aligned_cols=83  Identities=16%  Similarity=0.248  Sum_probs=50.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ..||+|+|+ |.||+.+++.+.. .+.+=+-+++++.  ..+..+........+  ..++++.+.+      .++|+||-
T Consensus       266 ~kkVlVIGA-G~mG~~~a~~L~~-~G~~~V~V~nRs~--era~~La~~~~g~~i~~~~~~dl~~al------~~aDVVIs  335 (519)
T PLN00203        266 SARVLVIGA-GKMGKLLVKHLVS-KGCTKMVVVNRSE--ERVAALREEFPDVEIIYKPLDEMLACA------AEADVVFT  335 (519)
T ss_pred             CCEEEEEeC-HHHHHHHHHHHHh-CCCCeEEEEeCCH--HHHHHHHHHhCCCceEeecHhhHHHHH------hcCCEEEE
Confidence            468999998 9999999998875 4654445566642  233333310001112  2245666666      47999998


Q ss_pred             cC---CchhHHHHHHHHH
Q 022057          113 FT---DASTVYDNVKQAT  127 (303)
Q Consensus       113 fT---~p~a~~~~~~~al  127 (303)
                      +|   .|-...+.++.+.
T Consensus       336 AT~s~~pvI~~e~l~~~~  353 (519)
T PLN00203        336 STSSETPLFLKEHVEALP  353 (519)
T ss_pred             ccCCCCCeeCHHHHHHhh
Confidence            76   3333466666654

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=93.38  E-value=0.43  Score=47.67  Aligned_cols=93  Identities=16%  Similarity=0.165  Sum_probs=56.0

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCc-----EEEEEEecCC-----CC-------cchh----hh-----hcCCCCCCeee
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDSHS-----VG-------EDIG----MV-----CDMEQPLEIPV   90 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~-----eLvg~vd~~~-----~g-------~d~~----~~-----~g~~~~~gv~v   90 (303)
                      ||.|+|| |.+|..+++.+. ..|+     .-+-++|.+.     .+       .|+|    +.     ..+.....+..
T Consensus         1 kVlvVGa-GGlGcE~lKnLa-l~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a   78 (435)
T cd01490           1 KVFLVGA-GAIGCELLKNFA-LMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITA   78 (435)
T ss_pred             CEEEECC-CHHHHHHHHHHH-HcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEE
Confidence            6899998 999999999887 4566     4555677321     11       1111    11     01111122222


Q ss_pred             cC-CH---------HHHHhccccCCCccEEEEcC-CchhHHHHHHHHHHcCCCeEEeC
Q 022057           91 MS-DL---------TMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYV  137 (303)
Q Consensus        91 ~~-dl---------~~~l~~~~~~~~~DVvIDfT-~p~a~~~~~~~al~~g~~vVigT  137 (303)
                      +. .+         ++.+      .++|+||++. ++++-...-..|..+++|+|-+-
T Consensus        79 ~~~~v~~~~~~~~~~~f~------~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~g  130 (435)
T cd01490          79 LQNRVGPETEHIFNDEFW------EKLDGVANALDNVDARMYVDRRCVYYRKPLLESG  130 (435)
T ss_pred             EecccChhhhhhhhHHHh------cCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence            21 11         1233      3689999987 55665667789999999999653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK05993 short chain dehydrogenase; Provisional

Probab=93.38  E-value=0.63  Score=42.62  Aligned_cols=79  Identities=15%  Similarity=0.241  Sum_probs=51.6

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID  112 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvID  112 (303)
                      |+.+|.|.|++|.+|+.+++.+.+ .+.+++.. +++.  ..                  ++++.+     ...+ +..|
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~-~G~~Vi~~-~r~~--~~------------------~~~l~~-----~~~~~~~~D   55 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQS-DGWRVFAT-CRKE--ED------------------VAALEA-----EGLEAFQLD   55 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEE-ECCH--HH------------------HHHHHH-----CCceEEEcc
Confidence            345799999999999999998875 68887764 3321  11                  112211     1233 3458


Q ss_pred             cCCchhHHHHHHHHHHc---CCCeEEeCCC
Q 022057          113 FTDASTVYDNVKQATAF---GMRSVVYVPH  139 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~---g~~vVigTTG  139 (303)
                      .+.++.....+..+.+.   ++++|+-..|
T Consensus        56 l~d~~~~~~~~~~~~~~~~g~id~li~~Ag   85 (277)
T PRK05993         56 YAEPESIAALVAQVLELSGGRLDALFNNGA   85 (277)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCccEEEECCC
Confidence            88888877777766542   5788877655

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=93.29  E-value=0.45  Score=45.98  Aligned_cols=32  Identities=16%  Similarity=0.188  Sum_probs=27.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      .+||.|.|++|-+|+.+++.+.+ .+.++.++.
T Consensus        21 ~~~IlVtGgtGfIG~~l~~~L~~-~G~~V~~v~   52 (370)
T PLN02695         21 KLRICITGAGGFIASHIARRLKA-EGHYIIASD   52 (370)
T ss_pred             CCEEEEECCccHHHHHHHHHHHh-CCCEEEEEE
Confidence            48999999999999999999886 578888754

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=93.20  E-value=0.42  Score=48.80  Aligned_cols=64  Identities=20%  Similarity=0.238  Sum_probs=45.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .+|+|+|. |+||+.+++.+. .-++++.+ +|+... .+..      ...++...++++++++      .+|+|+-..+
T Consensus       139 ktvgIiG~-G~IG~~vA~~l~-~fG~~V~~-~d~~~~-~~~~------~~~g~~~~~~l~ell~------~aDvV~l~lP  202 (525)
T TIGR01327       139 KTLGVIGL-GRIGSIVAKRAK-AFGMKVLA-YDPYIS-PERA------EQLGVELVDDLDELLA------RADFITVHTP  202 (525)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCEEEE-ECCCCC-hhHH------HhcCCEEcCCHHHHHh------hCCEEEEccC
Confidence            68999997 999999999887 45888875 665311 1111      1345555678999984      7999886553

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK12320 hypothetical protein; Provisional

Probab=93.20  E-value=0.58  Score=49.44  Aligned_cols=85  Identities=16%  Similarity=0.239  Sum_probs=52.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-ec---C--CHHHHHhccccCCCccE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VM---S--DLTMVLGSISQSKARAV  109 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~---~--dl~~~l~~~~~~~~~DV  109 (303)
                      |||.|.|++|.+|+.+++.+.+ .+.++++......   +.   .    ..++. +.   .  .+.+++      .++|+
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~-~G~~Vi~ldr~~~---~~---~----~~~ve~v~~Dl~d~~l~~al------~~~D~   63 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIA-AGHTVSGIAQHPH---DA---L----DPRVDYVCASLRNPVLQELA------GEADA   63 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHh-CCCEEEEEeCChh---hc---c----cCCceEEEccCCCHHHHHHh------cCCCE
Confidence            4899999999999999998874 5788887543211   00   0    00111 11   1  133344      36899


Q ss_pred             EEEcCCch----------hHHHHHHHHHHcCCCeEEeC
Q 022057          110 VIDFTDAS----------TVYDNVKQATAFGMRSVVYV  137 (303)
Q Consensus       110 vIDfT~p~----------a~~~~~~~al~~g~~vVigT  137 (303)
                      ||.+..+.          .....+..|.++|+.+|.-.
T Consensus        64 VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~~S  101 (699)
T PRK12320         64 VIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLFVS  101 (699)
T ss_pred             EEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEEEE
Confidence            99987432          13345677778888766533

>PRK14031 glutamate dehydrogenase; Provisional

Probab=93.14  E-value=0.57  Score=46.95  Aligned_cols=118  Identities=18%  Similarity=0.156  Sum_probs=70.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhh----------c----CCCCCCeeecCCHHH
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVC----------D----MEQPLEIPVMSDLTM   96 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~----------g----~~~~~gv~v~~dl~~   96 (303)
                      .||+|.|+ |++|+..++.+. +.+..|+++.|.+     ..|-|..++.          +    .....++... +.++
T Consensus       229 ~rVaVQGf-GNVG~~aA~~L~-e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~d~  305 (444)
T PRK14031        229 KVCLVSGS-GNVAQYTAEKVL-ELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EGAR  305 (444)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CCcc
Confidence            68999997 999999999887 5799999998842     2244443221          0    0001122222 3345


Q ss_pred             HHhccccCCCccEEEEcCCchh-HHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057           97 VLGSISQSKARAVVIDFTDAST-VYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus        97 ~l~~~~~~~~~DVvIDfT~p~a-~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                      ++.     .++||++=+..... ..+++......|+-+|++-- +.+..+  ..+.+.+ +  .+++.|-+.
T Consensus       306 ~~~-----~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgAN~P~t~e--A~~~L~~-r--gI~~~PD~~  367 (444)
T PRK14031        306 PWG-----EKGDIALPSATQNELNGDDARQLVANGVIAVSEGANMPSTPE--AIKVFQD-A--KILYAPGKA  367 (444)
T ss_pred             ccc-----CCCcEEeecccccccCHHHHHHHHhcCCeEEECCCCCCCCHH--HHHHHHH-C--CcEEeChhh
Confidence            554     57899986654433 36777777777888888755 433222  2233333 3  345556553

>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]

Probab=93.13  E-value=0.26  Score=48.36  Aligned_cols=125  Identities=16%  Similarity=0.114  Sum_probs=85.7

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-e---cCCHHHHHhccccCCCccE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-V---MSDLTMVLGSISQSKARAV  109 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v---~~dl~~~l~~~~~~~~~DV  109 (303)
                      ++-+|.+.|+ |.+.+-.++.+.++.+.++.-+.+.-   .++.++..   ...+. +   ..+.+..+..  ...+-|+
T Consensus         1 ~~~~vlllgs-g~v~~p~~d~ls~~~dv~vtva~~~~---~~~~~~~~---~~~~~av~ldv~~~~~~L~~--~v~~~D~   71 (445)
T KOG0172|consen    1 TKKGVLLLGS-GFVSRPVADFLSRKKDVNVTVASRTL---KDAEALVK---GINIKAVSLDVADEELALRK--EVKPLDL   71 (445)
T ss_pred             CCcceEEecC-ccccchHHHHHhhcCCceEEEehhhH---HHHHHHhc---CCCccceEEEccchHHHHHh--hhcccce
Confidence            3568999997 99999999999999999998776542   34444432   11121 1   1122212211  0146799


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      +|--++...+.-.++.|..++.++|  |+.+-..++++|.+.+...|+.++=---.-+|+
T Consensus        72 viSLlP~t~h~lVaK~~i~~~~~~v--tsSyv~pe~~~L~~~~v~AG~ti~~e~gldpGi  129 (445)
T KOG0172|consen   72 VISLLPYTFHPLVAKGCIITKEDSV--TSSYVDPELEELEKAAVPAGSTIMNEIGLDPGI  129 (445)
T ss_pred             eeeeccchhhHHHHHHHHHhhcccc--cccccCHHHHhhhhhccCCCceEecccccCcch
Confidence            9977777777888899999999988  456766788999999999887766333345555

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=93.13  E-value=0.39  Score=44.45  Aligned_cols=32  Identities=31%  Similarity=0.457  Sum_probs=26.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      ++|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~-~g~~V~~~~r   32 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLE-QGEEVRVLVR   32 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHH-CCCEEEEEEe
Confidence            4799999999999999999885 4678776543

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK09135 pteridine reductase; Provisional

Probab=93.05  E-value=4.4  Score=35.67  Aligned_cols=172  Identities=18%  Similarity=0.139  Sum_probs=90.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++++..+..  .....+               .+.+.+. ...... +..|.+
T Consensus         7 ~~vlItGa~g~iG~~l~~~l~~-~g~~v~~~~r~~~--~~~~~~---------------~~~~~~~-~~~~~~~~~~Dl~   67 (249)
T PRK09135          7 KVALITGGARRIGAAIARTLHA-AGYRVAIHYHRSA--AEADAL---------------AAELNAL-RPGSAAALQADLL   67 (249)
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHH---------------HHHHHhh-cCCceEEEEcCCC
Confidence            5799999999999999999885 5788876543221  001110               0111100 000122 345788


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCCCH------HHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcE
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHIQL------ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNV  186 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~~~------e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~di  186 (303)
                      .++.....+..+.+.  ++.+|+-..|...      ...+.+++         .+..|+.--+++++.+...+.+...-+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~---------~~~~n~~g~~~l~~~~~~~~~~~~~~~  138 (249)
T PRK09135         68 DPDALPELVAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDD---------LFASNLKAPFFLSQAAAPQLRKQRGAI  138 (249)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHH---------HHHHhchhHHHHHHHHHHHHhhCCeEE
Confidence            887777766655443  4678888776321      11122222         233455555566666554443221111


Q ss_pred             E-EEEccC---CCCCCCcHHHHHHHHHHHh-cCcccccCcccccccccCccccCCceeEEEEEcCCCceeE
Q 022057          187 E-IVESRP---NARDFPSPDATQIANNLSN-LGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSST  252 (303)
Q Consensus       187 e-IiE~Hh---~K~DaPSGTA~~l~~~i~~-~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg~H  252 (303)
                      - +...+.   .+...|-|.++..++.+.+ +...                .+ ..+.+..+|.|.+.+..
T Consensus       139 ~~~~~~~~~~~~~~~~~Y~~sK~~~~~~~~~l~~~----------------~~-~~i~~~~v~pg~~~~~~  192 (249)
T PRK09135        139 VNITDIHAERPLKGYPVYCAAKAALEMLTRSLALE----------------LA-PEVRVNAVAPGAILWPE  192 (249)
T ss_pred             EEEeChhhcCCCCCchhHHHHHHHHHHHHHHHHHH----------------HC-CCCeEEEEEeccccCcc
Confidence            1 122222   2344556777766665543 1110                01 24778889988887654

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=93.02  E-value=0.26  Score=46.68  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=27.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      |.||.|.|++|-+|+.+++.+.+ .+.+++.++++
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~-~g~~~v~~~~~   34 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIIN-ETSDAVVVVDK   34 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHH-cCCCEEEEEec
Confidence            46899999999999999999985 46666666664

>PRK05693 short chain dehydrogenase; Provisional

Probab=92.99  E-value=0.78  Score=41.75  Aligned_cols=79  Identities=23%  Similarity=0.276  Sum_probs=52.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf  113 (303)
                      |.++.|.|++|.+|+.+++.+.+ .+.+|+.. +++.  .+                  ++++.+     ...+ +..|.
T Consensus         1 mk~vlItGasggiG~~la~~l~~-~G~~V~~~-~r~~--~~------------------~~~~~~-----~~~~~~~~Dl   53 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKA-AGYEVWAT-ARKA--ED------------------VEALAA-----AGFTAVQLDV   53 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHH-CCCEEEEE-eCCH--HH------------------HHHHHH-----CCCeEEEeeC
Confidence            35799999999999999998874 57887754 4321  11                  112221     1233 34788


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      +.++...+.+..+.+.  ++++|+=..|.
T Consensus        54 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~   82 (274)
T PRK05693         54 NDGAALARLAEELEAEHGGLDVLINNAGY   82 (274)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            9888888877776553  57888877663

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=92.98  E-value=0.76  Score=42.11  Aligned_cols=30  Identities=20%  Similarity=0.283  Sum_probs=25.0

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcC-CcEEEEE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKAR-GMEVAGA   66 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~   66 (303)
                      ||.|.|++|.+|+.+++.+.+.. +.++++.
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~   31 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVL   31 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEe
Confidence            58999999999999999988654 4777753

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=92.95  E-value=2  Score=43.09  Aligned_cols=141  Identities=21%  Similarity=0.147  Sum_probs=78.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecC-C-HHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-D-LTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-d-l~~~l~~~~~~~~~DVvID  112 (303)
                      ++||+|+|. |+-|+..++.+.+ .+.++. +.|.+...........  ...++.+.. + ..+.+      ..+|+||-
T Consensus         7 ~~kv~V~GL-G~sG~a~a~~L~~-~G~~v~-v~D~~~~~~~~~~~~~--~~~~i~~~~g~~~~~~~------~~~d~vV~   75 (448)
T COG0771           7 GKKVLVLGL-GKSGLAAARFLLK-LGAEVT-VSDDRPAPEGLAAQPL--LLEGIEVELGSHDDEDL------AEFDLVVK   75 (448)
T ss_pred             CCEEEEEec-ccccHHHHHHHHH-CCCeEE-EEcCCCCccchhhhhh--hccCceeecCccchhcc------ccCCEEEE
Confidence            579999997 9999999998874 567665 4663221110000000  123343321 1 11222      47898884


Q ss_pred             cC-CchhHHHHHHHHHHcCCCeE---------------EeCCCCCH--HHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHH
Q 022057          113 FT-DASTVYDNVKQATAFGMRSV---------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQ  174 (303)
Q Consensus       113 fT-~p~a~~~~~~~al~~g~~vV---------------igTTG~~~--e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~  174 (303)
                      .- -|-. .+.+..|.+.|++++               ++-||-+-  --...|..+.++.|.+...+.|...++  +..
T Consensus        76 SPGi~~~-~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~--l~~  152 (448)
T COG0771          76 SPGIPPT-HPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA--LEL  152 (448)
T ss_pred             CCCCCCC-CHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccH--HHh
Confidence            32 1222 224555555555544               34454331  134567778888999999999998887  322


Q ss_pred             HHHHhccCCCcEEEEEcc
Q 022057          175 AAISASFHYKNVEIVESR  192 (303)
Q Consensus       175 ~a~~~~~~~~dieIiE~H  192 (303)
                      +..   ...+|+-++|.-
T Consensus       153 ~~~---~~~~d~~VlElS  167 (448)
T COG0771         153 LEQ---AEPADVYVLELS  167 (448)
T ss_pred             hcc---cCCCCEEEEEcc
Confidence            222   123567777764

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=92.93  E-value=0.5  Score=46.15  Aligned_cols=33  Identities=27%  Similarity=0.499  Sum_probs=28.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      ++||.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus        60 ~~kVLVtGatG~IG~~l~~~Ll~-~G~~V~~l~R   92 (390)
T PLN02657         60 DVTVLVVGATGYIGKFVVRELVR-RGYNVVAVAR   92 (390)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEEe
Confidence            47999999999999999999875 5788887653

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=92.93  E-value=0.37  Score=42.94  Aligned_cols=86  Identities=17%  Similarity=0.197  Sum_probs=52.5

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVID  112 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvID  112 (303)
                      ||.+|.|.|++|.+|+.+++.+.+ .+.+++....++.  +....+               .+.+..  ...++ -+..|
T Consensus         1 m~k~ilItGas~giG~~la~~l~~-~g~~v~~~~~~~~--~~~~~~---------------~~~~~~--~~~~~~~~~~D   60 (248)
T PRK06947          1 MRKVVLITGASRGIGRATAVLAAA-RGWSVGINYARDA--AAAEET---------------ADAVRA--AGGRACVVAGD   60 (248)
T ss_pred             CCcEEEEeCCCCcHHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHH---------------HHHHHh--cCCcEEEEEec
Confidence            567899999999999999999885 5788765443321  111110               111110  00112 23467


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .+.++...+.+..+.+.  ++++|+-..|
T Consensus        61 l~~~~~~~~~~~~~~~~~~~id~li~~ag   89 (248)
T PRK06947         61 VANEADVIAMFDAVQSAFGRLDALVNNAG   89 (248)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            88888887777766543  4778886665

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=92.92  E-value=0.59  Score=46.07  Aligned_cols=130  Identities=16%  Similarity=0.141  Sum_probs=79.5

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-------CCCc------chhh-hhcCCCCCCeeecCCHHHHH
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------SVGE------DIGM-VCDMEQPLEIPVMSDLTMVL   98 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-------~~g~------d~~~-~~g~~~~~gv~v~~dl~~~l   98 (303)
                      .|.++|+|+|. |-+|--++-+.+ ..++.++| +|.+       ..|+      +..+ +...-.......++|.+++ 
T Consensus         7 ~~~~~I~ViGL-GYVGLPlA~~fA-~~G~~ViG-~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-   82 (436)
T COG0677           7 NMSATIGVIGL-GYVGLPLAAAFA-SAGFKVIG-VDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-   82 (436)
T ss_pred             CCceEEEEEcc-ccccHHHHHHHH-HcCCceEe-EeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-
Confidence            34589999997 999999998766 57899998 4521       1121      1111 1000012335667787776 


Q ss_pred             hccccCCCccEEEEcCC-------------chhHHHHHHHHHHcCCCeEEeCC---CCCHHHHHHHHHH----hhhcCCe
Q 022057           99 GSISQSKARAVVIDFTD-------------ASTVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAF----CDKASMG  158 (303)
Q Consensus        99 ~~~~~~~~~DVvIDfT~-------------p~a~~~~~~~al~~g~~vVigTT---G~~~e~~~~L~~~----a~~~~i~  158 (303)
                            ..+|++|.+-+             -+.+.+.+...++.|-=||+++|   |-+++-...|.+.    .-.....
T Consensus        83 ------~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~  156 (436)
T COG0677          83 ------KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFY  156 (436)
T ss_pred             ------ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceee
Confidence                  47899886531             23445666778889999999987   7777665555543    1112356


Q ss_pred             EEEcCCCcHHHHHH
Q 022057          159 CLIAPTLSIGSILL  172 (303)
Q Consensus       159 vv~a~N~SiGv~ll  172 (303)
                      +-+||-=-.-.|.+
T Consensus       157 laysPERv~PG~~~  170 (436)
T COG0677         157 LAYSPERVLPGNVL  170 (436)
T ss_pred             EeeCccccCCCchh
Confidence            66766544444433

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=92.84  E-value=0.57  Score=44.41  Aligned_cols=34  Identities=24%  Similarity=0.183  Sum_probs=26.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      |||+|+|+ |.+|..++..+....-..-+..+|.+
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~   34 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDIN   34 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            48999998 99999999988765433445578864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=92.79  E-value=1.1  Score=44.78  Aligned_cols=124  Identities=16%  Similarity=0.129  Sum_probs=70.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhh--hhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGM--VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~--~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      .-+|.|+|+ |.+|..+++.+. .+|+.=+-++|.... ..|.+.  +... +..|-+-.....+.+.+    -++||-+
T Consensus        20 ~s~VlliG~-gglGsEilKNLv-L~GIg~~tIvD~~~V~~sDL~~nFfl~~-~diGk~kA~~~~~~L~e----LNp~V~i   92 (425)
T cd01493          20 SAHVCLLNA-TATGTEILKNLV-LPGIGSFTIVDGSKVDEEDLGNNFFLDA-SSLGKSRAEATCELLQE----LNPDVNG   92 (425)
T ss_pred             hCeEEEEcC-cHHHHHHHHHHH-HcCCCeEEEECCCcCchhhccccccCCh-hhcCcHHHHHHHHHHHH----HCCCCEE
Confidence            368999998 899999999987 688876677875321 112111  0000 01111111112223332    4788877


Q ss_pred             EcC--CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057          112 DFT--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI  167 (303)
Q Consensus       112 DfT--~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~Si  167 (303)
                      ++.  .++...+..... =.+-.+||.|+ .+......|.++|.+.++|++.+..++.
T Consensus        93 ~~~~e~~~~ll~~~~~f-~~~fdiVI~t~-~~~~~~~~L~~~c~~~~iPlI~~~s~G~  148 (425)
T cd01493          93 SAVEESPEALLDNDPSF-FSQFTVVIATN-LPESTLLRLADVLWSANIPLLYVRSYGL  148 (425)
T ss_pred             EEEecccchhhhhHHHH-hcCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEecccC
Confidence            764  333333222221 23557888654 4555667788999999999887665443

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=92.70  E-value=0.81  Score=45.10  Aligned_cols=121  Identities=13%  Similarity=0.103  Sum_probs=67.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhhcCCCCCC-eeecCCHHHHHhcc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSI  101 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~~~~~g~~~~~g-v~v~~dl~~~l~~~  101 (303)
                      |||.|+|. |-+|-..+-.++ +-++++++ +|.+             ....-+.++.......| ...++|++++++  
T Consensus         1 MkI~viGt-GYVGLv~g~~lA-~~GHeVv~-vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~--   75 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLA-ELGHEVVC-VDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVK--   75 (414)
T ss_pred             CceEEECC-chHHHHHHHHHH-HcCCeEEE-EeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHh--
Confidence            79999996 999999987666 45789887 4421             11112233332111122 667889998884  


Q ss_pred             ccCCCccEEEEcC--Cch--h--HHHHHHHHHH------cCCCeEEeCC----CCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057          102 SQSKARAVVIDFT--DAS--T--VYDNVKQATA------FGMRSVVYVP----HIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       102 ~~~~~~DVvIDfT--~p~--a--~~~~~~~al~------~g~~vVigTT----G~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                          +.|+++.++  ++.  .  -..+++.+++      .+.++|+.++    |.+++-.+.+.+........++..|=|
T Consensus        76 ----~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF  151 (414)
T COG1004          76 ----DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF  151 (414)
T ss_pred             ----cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence                789888764  221  1  1222222222      2336666653    777655455554443333445555544

>PLN02206 UDP-glucuronate decarboxylase

Probab=92.63  E-value=0.69  Score=46.10  Aligned_cols=30  Identities=23%  Similarity=0.368  Sum_probs=26.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~   66 (303)
                      +||.|.|++|-+|+.+++.+.+ .+.+++++
T Consensus       120 ~kILVTGatGfIGs~Lv~~Ll~-~G~~V~~l  149 (442)
T PLN02206        120 LRVVVTGGAGFVGSHLVDRLMA-RGDSVIVV  149 (442)
T ss_pred             CEEEEECcccHHHHHHHHHHHH-CcCEEEEE
Confidence            7999999999999999999886 47888864

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=92.60  E-value=0.88  Score=42.45  Aligned_cols=30  Identities=13%  Similarity=0.153  Sum_probs=23.2

Q ss_pred             EEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           40 INGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        40 V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      |.|++|-+|+.+++.+.++....=|-++|.
T Consensus         2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~   31 (280)
T PF01073_consen    2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDR   31 (280)
T ss_pred             EEcCCcHHHHHHHHHHHHCCCceEEEEccc
Confidence            789999999999999998765333445664

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PLN02602 lactate dehydrogenase

Probab=92.56  E-value=0.49  Score=45.90  Aligned_cols=71  Identities=15%  Similarity=0.181  Sum_probs=41.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g--~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (303)
                      .||+|+|+ |++|..++-.+...+-..=+..+|.+.   .|  .|+...+.......+....+++++       .++|+|
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~~-------~daDiV  109 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVT-------AGSDLC  109 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHHh-------CCCCEE
Confidence            69999998 999999999887655443345677532   11  122221111011222223577764       589998


Q ss_pred             EEcC
Q 022057          111 IDFT  114 (303)
Q Consensus       111 IDfT  114 (303)
                      |-..
T Consensus       110 VitA  113 (350)
T PLN02602        110 IVTA  113 (350)
T ss_pred             EECC
Confidence            8653

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=92.54  E-value=0.68  Score=44.27  Aligned_cols=31  Identities=29%  Similarity=0.362  Sum_probs=26.3

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ||.|+|+ |.+|.++++.+. ..|+.-+-++|.
T Consensus         1 kVlIVGa-GGlG~EiaKnLa-l~Gvg~ItIvD~   31 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLV-LTGFGEIHIIDL   31 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHH-HhcCCeEEEEcC
Confidence            6899998 999999999987 467777778884

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd00704 MDH Malate dehydrogenase

Probab=92.54  E-value=0.51  Score=45.23  Aligned_cols=24  Identities=25%  Similarity=0.520  Sum_probs=20.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKAR   59 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~   59 (303)
                      +||+|+|++|++|+.++..+...+
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~   24 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGE   24 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCC
Confidence            589999999999999999887543

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02214 cinnamoyl-CoA reductase

Probab=92.54  E-value=0.91  Score=43.24  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=28.2

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      ++++|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r   42 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLE-RGYTVKGTVR   42 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CcCEEEEEeC
Confidence            356899999999999999998875 5788887553

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=92.48  E-value=0.22  Score=49.41  Aligned_cols=71  Identities=17%  Similarity=0.177  Sum_probs=45.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC---eeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g---v~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      .||.|+|+ |.||+.+++.+.. .+..-+-+++++.  ..+..++.   .++   +..++++.+.+      .++|+||.
T Consensus       182 kkvlviGa-G~~a~~va~~L~~-~g~~~I~V~nRt~--~ra~~La~---~~~~~~~~~~~~l~~~l------~~aDiVI~  248 (414)
T PRK13940        182 KNVLIIGA-GQTGELLFRHVTA-LAPKQIMLANRTI--EKAQKITS---AFRNASAHYLSELPQLI------KKADIIIA  248 (414)
T ss_pred             CEEEEEcC-cHHHHHHHHHHHH-cCCCEEEEECCCH--HHHHHHHH---HhcCCeEecHHHHHHHh------ccCCEEEE
Confidence            58999998 9999999999875 4544455666542  23333432   222   22246666666      47999998


Q ss_pred             cC-CchhH
Q 022057          113 FT-DASTV  119 (303)
Q Consensus       113 fT-~p~a~  119 (303)
                      +| .|..+
T Consensus       249 aT~a~~~v  256 (414)
T PRK13940        249 AVNVLEYI  256 (414)
T ss_pred             CcCCCCee
Confidence            88 34443

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=92.48  E-value=0.35  Score=46.35  Aligned_cols=64  Identities=16%  Similarity=0.091  Sum_probs=42.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|||+|+ |++|+.+++.+...=++++++ .|+... .+..      ...++. +.+++++++      .+|+|+-..
T Consensus       145 gktvGIiG~-G~IG~~va~~l~~~fgm~V~~-~~~~~~-~~~~------~~~~~~-~~~l~ell~------~sDvv~lh~  208 (323)
T PRK15409        145 HKTLGIVGM-GRIGMALAQRAHFGFNMPILY-NARRHH-KEAE------ERFNAR-YCDLDTLLQ------ESDFVCIIL  208 (323)
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHhcCCCEEEE-ECCCCc-hhhH------HhcCcE-ecCHHHHHH------hCCEEEEeC
Confidence            378999997 999999999875245888774 554321 1111      123333 458999994      799988644

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=92.48  E-value=2.3  Score=41.77  Aligned_cols=117  Identities=19%  Similarity=0.179  Sum_probs=64.0

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh---hhhcCCCCCCeeecC--CHHHHHhccccCCCccEEE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG---MVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~---~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVvI  111 (303)
                      ||.++|. |+.|..+++.+. ..+.++.+ .|.... .+..   .+..  ...|+.++.  + .+.+      .++|+||
T Consensus         1 ~~~~iG~-G~~G~a~a~~l~-~~G~~V~~-sD~~~~-~~~~~~~~~~~--~~~gi~~~~g~~-~~~~------~~~d~vv   67 (433)
T TIGR01087         1 KILILGL-GKTGRAVARFLH-KKGAEVTV-TDLKPN-EELEPSMGQLR--LNEGSVLHTGLH-LEDL------NNADLVV   67 (433)
T ss_pred             CEEEEEe-CHhHHHHHHHHH-HCCCEEEE-EeCCCC-ccchhHHHHHh--hccCcEEEecCc-hHHh------ccCCEEE
Confidence            5899998 999999998766 56888764 774321 1111   1110  123665542  3 3344      3689887


Q ss_pred             EcCC-chhHHHHHHHHHHcCCCeE--------------EeCCCCCH--HHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057          112 DFTD-ASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSI  167 (303)
Q Consensus       112 DfT~-p~a~~~~~~~al~~g~~vV--------------igTTG~~~--e~~~~L~~~a~~~~i~vv~a~N~Si  167 (303)
                      -.+. |.. .+.+..|.+.|+|++              |+-||-.-  --...|..+-+..+..++...|+..
T Consensus        68 ~sp~i~~~-~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~  139 (433)
T TIGR01087        68 KSPGIPPD-HPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGT  139 (433)
T ss_pred             ECCCCCCC-CHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCH
Confidence            5442 332 344555666666654              44454321  1122344444555556677788644

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=92.46  E-value=0.77  Score=43.77  Aligned_cols=30  Identities=20%  Similarity=0.291  Sum_probs=24.3

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      ||.|+|+ |..|..+++.+.. .++.=+-++|
T Consensus         1 kVLIvGa-GGLGs~vA~~La~-aGVg~ItlvD   30 (307)
T cd01486           1 KCLLLGA-GTLGCNVARNLLG-WGVRHITFVD   30 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHH-cCCCeEEEEC
Confidence            6899999 9999999999874 5665555666

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK08177 short chain dehydrogenase; Provisional

Probab=92.42  E-value=0.74  Score=40.59  Aligned_cols=80  Identities=14%  Similarity=0.170  Sum_probs=51.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDf  113 (303)
                      |.++.|.|++|.+|+.+++.+.+ .+.+|+. ++++.  .+..++               ++.       .+. -..+|+
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~-------~~~~~~~~D~   54 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLE-RGWQVTA-TVRGP--QQDTAL---------------QAL-------PGVHIEKLDM   54 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHh-CCCEEEE-EeCCC--cchHHH---------------Hhc-------cccceEEcCC
Confidence            35799999999999999999885 5788765 44432  111111               010       011 124578


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTTG~  140 (303)
                      +.++...+.+....+.++++|+=..|.
T Consensus        55 ~d~~~~~~~~~~~~~~~id~vi~~ag~   81 (225)
T PRK08177         55 NDPASLDQLLQRLQGQRFDLLFVNAGI   81 (225)
T ss_pred             CCHHHHHHHHHHhhcCCCCEEEEcCcc
Confidence            888887777776665678888866654

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=92.38  E-value=1.2  Score=39.63  Aligned_cols=88  Identities=18%  Similarity=0.200  Sum_probs=52.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHH-HHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTM-VLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~-~l~~~~~~~~~DVvIDf  113 (303)
                      .||.|+|+ |+||...++.+.+ .+.+++ +++++. ...+.+++.   ...+.. ...+++ .+      .++|+||-+
T Consensus        11 k~vLVIGg-G~va~~ka~~Ll~-~ga~V~-VIs~~~-~~~l~~l~~---~~~i~~~~~~~~~~~l------~~adlViaa   77 (202)
T PRK06718         11 KRVVIVGG-GKVAGRRAITLLK-YGAHIV-VISPEL-TENLVKLVE---EGKIRWKQKEFEPSDI------VDAFLVIAA   77 (202)
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCeEE-EEcCCC-CHHHHHHHh---CCCEEEEecCCChhhc------CCceEEEEc
Confidence            58999998 9999999988875 446665 344432 223333331   112222 112222 23      478999988


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEe
Q 022057          114 TDASTVYDNVKQATAFGMRSVVY  136 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVig  136 (303)
                      |.-+.....+...++.++.+-+.
T Consensus        78 T~d~elN~~i~~~a~~~~lvn~~  100 (202)
T PRK06718         78 TNDPRVNEQVKEDLPENALFNVI  100 (202)
T ss_pred             CCCHHHHHHHHHHHHhCCcEEEC
Confidence            87666666555555777766543

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=92.35  E-value=0.54  Score=49.09  Aligned_cols=32  Identities=22%  Similarity=0.360  Sum_probs=25.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      ..||.|+|| |..|..+++.+.. -|+.=+.++|
T Consensus       338 ~~kVLIvGa-GGLGs~VA~~La~-~GVg~ItlVD  369 (664)
T TIGR01381       338 QLKVLLLGA-GTLGCNVARCLIG-WGVRHITFVD  369 (664)
T ss_pred             cCeEEEECC-cHHHHHHHHHHHH-cCCCeEEEEc
Confidence            368999999 9999999998874 5665555666

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=92.24  E-value=0.43  Score=46.84  Aligned_cols=60  Identities=22%  Similarity=0.213  Sum_probs=41.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|||+|+ |+||+.+++.+. .=|+++.+ +|+...  +.+        .. ..+.++++++.      ++|+|+-.+
T Consensus       116 gktvGIIG~-G~IG~~vA~~l~-a~G~~V~~-~dp~~~--~~~--------~~-~~~~~L~ell~------~sDiI~lh~  175 (378)
T PRK15438        116 DRTVGIVGV-GNVGRRLQARLE-ALGIKTLL-CDPPRA--DRG--------DE-GDFRSLDELVQ------EADILTFHT  175 (378)
T ss_pred             CCEEEEECc-CHHHHHHHHHHH-HCCCEEEE-ECCccc--ccc--------cc-cccCCHHHHHh------hCCEEEEeC
Confidence            368999998 999999999877 46898876 565321  100        00 12567899884      689887544

>PLN02494 adenosylhomocysteinase

Probab=92.21  E-value=0.87  Score=45.95  Aligned_cols=99  Identities=11%  Similarity=0.078  Sum_probs=55.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|+ |++|+.+++.+.. -+++++. ++.+..  ...+..    ..|..+. ++++++      ..+|++|+.|
T Consensus       254 GKtVvViGy-G~IGr~vA~~aka-~Ga~VIV-~e~dp~--r~~eA~----~~G~~vv-~leEal------~~ADVVI~tT  317 (477)
T PLN02494        254 GKVAVICGY-GDVGKGCAAAMKA-AGARVIV-TEIDPI--CALQAL----MEGYQVL-TLEDVV------SEADIFVTTT  317 (477)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEEE-EeCCch--hhHHHH----hcCCeec-cHHHHH------hhCCEEEECC
Confidence            368999998 9999999998874 4787654 654321  111111    2233332 577877      3789999876


Q ss_pred             Cchh-HHHHHHHHHHcCCCeEEeCCCC-C-HHHHHHHHHH
Q 022057          115 DAST-VYDNVKQATAFGMRSVVYVPHI-Q-LETVSALSAF  151 (303)
Q Consensus       115 ~p~a-~~~~~~~al~~g~~vVigTTG~-~-~e~~~~L~~~  151 (303)
                      .... ........++.|--+  ...|. . +-+.+.|.++
T Consensus       318 Gt~~vI~~e~L~~MK~GAiL--iNvGr~~~eID~~aL~~~  355 (477)
T PLN02494        318 GNKDIIMVDHMRKMKNNAIV--CNIGHFDNEIDMLGLETY  355 (477)
T ss_pred             CCccchHHHHHhcCCCCCEE--EEcCCCCCccCHHHHhhc
Confidence            5433 223333334444333  33443 2 2234556555

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=92.16  E-value=0.39  Score=45.42  Aligned_cols=32  Identities=28%  Similarity=0.382  Sum_probs=24.5

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (303)
                      ||+|+|+ |.+|+.++..+....-. +|+ ++|.+
T Consensus         2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~-l~D~~   34 (306)
T cd05291           2 KVVIIGA-GHVGSSFAYSLVNQGIADELV-LIDIN   34 (306)
T ss_pred             EEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEeCC
Confidence            8999998 99999999988765433 544 56753

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=92.15  E-value=0.3  Score=47.30  Aligned_cols=95  Identities=23%  Similarity=0.280  Sum_probs=61.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc----hhh-hhcCCCCCCeeec---
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED----IGM-VCDMEQPLEIPVM---   91 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d----~~~-~~g~~~~~gv~v~---   91 (303)
                      -.|.|+|| |+.|--.+..+.. .++-=.|++|.+.                .|+.    +.. +-.+.+...|..|   
T Consensus        67 s~VLVVGa-GGLGcPa~~YLaa-aGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~  144 (427)
T KOG2017|consen   67 SSVLVVGA-GGLGCPAAQYLAA-AGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEF  144 (427)
T ss_pred             ccEEEEcc-CCCCCHHHHHHHH-cCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhh
Confidence            57999999 9999999998774 5666678887421                1111    000 0111122223222   


Q ss_pred             ---CCHHHHHhccccCCCccEEEEcCC-chhHHHHHHHHHHcCCCeEEeCC
Q 022057           92 ---SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus        92 ---~dl~~~l~~~~~~~~~DVvIDfT~-p~a~~~~~~~al~~g~~vVigTT  138 (303)
                         ++..+++      ...|||.|+|. +..-+=.-..|.-.|+|+|+|..
T Consensus       145 L~~sNa~~Ii------~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSa  189 (427)
T KOG2017|consen  145 LSSSNAFDII------KQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSA  189 (427)
T ss_pred             ccchhHHHHh------hccceEEEcCCCccchhhhhhHHHHcCCccccccc
Confidence               3455566      47999999995 44446666899999999999975

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=92.13  E-value=0.73  Score=43.97  Aligned_cols=150  Identities=21%  Similarity=0.210  Sum_probs=84.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC---CCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM---EQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~---~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      |+|.|.|..|-+|+..+..+.+ .+.+++ ++|.-..|... .+.-.   .-..++.=..-+++++++    .++|.||.
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~-~G~~vv-V~DNL~~g~~~-~v~~~~~~f~~gDi~D~~~L~~vf~~----~~idaViH   73 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLK-TGHEVV-VLDNLSNGHKI-ALLKLQFKFYEGDLLDRALLTAVFEE----NKIDAVVH   73 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHH-CCCeEE-EEecCCCCCHH-HhhhccCceEEeccccHHHHHHHHHh----cCCCEEEE
Confidence            5899999999999999998885 788877 57742222211 11100   000011111235566654    78999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCC-eEEEcCCCcHHHHHHHHHHHHhccCCCcEEEEEc
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM-GCLIAPTLSIGSILLQQAAISASFHYKNVEIVES  191 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i-~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~  191 (303)
                      |.--..+-|-+..=++.=-+=|.||-        .|.+++++.|+ .+++|+.           |... ..-..+-|.|.
T Consensus        74 FAa~~~VgESv~~Pl~Yy~NNv~gTl--------~Ll~am~~~gv~~~vFSSt-----------AavY-G~p~~~PI~E~  133 (329)
T COG1087          74 FAASISVGESVQNPLKYYDNNVVGTL--------NLIEAMLQTGVKKFIFSST-----------AAVY-GEPTTSPISET  133 (329)
T ss_pred             CccccccchhhhCHHHHHhhchHhHH--------HHHHHHHHhCCCEEEEecc-----------hhhc-CCCCCcccCCC
Confidence            98544433333222222222244541        34455555554 4444432           1111 11134678999


Q ss_pred             cCCCCCCCcHHHHHHHHHHHh
Q 022057          192 RPNARDFPSPDATQIANNLSN  212 (303)
Q Consensus       192 Hh~K~DaPSGTA~~l~~~i~~  212 (303)
                      |....-.|=|..+.+.|.|-.
T Consensus       134 ~~~~p~NPYG~sKlm~E~iL~  154 (329)
T COG1087         134 SPLAPINPYGRSKLMSEEILR  154 (329)
T ss_pred             CCCCCCCcchhHHHHHHHHHH
Confidence            986677799999999998744

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=92.12  E-value=0.51  Score=45.21  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHh
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTK   57 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~   57 (303)
                      ++||+|+|++|++|..++-.+..
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~   24 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIAS   24 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHh
Confidence            47999999889999999987774

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=92.05  E-value=0.95  Score=41.70  Aligned_cols=30  Identities=27%  Similarity=0.529  Sum_probs=23.4

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEec
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (303)
                      |.|.|++|-+|+.+++.+.+. +. ++++ +++
T Consensus         1 ilItGatG~iG~~l~~~L~~~-g~~~v~~-~~~   31 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNER-GITDILV-VDN   31 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHc-CCceEEE-Eec
Confidence            579999999999999999865 44 5554 554

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK06395 phosphoribosylamine--glycine ligase; Provisional

Probab=91.95  E-value=0.94  Score=45.13  Aligned_cols=92  Identities=13%  Similarity=0.133  Sum_probs=53.0

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      |+|||.|+|. |.=...++..+.+. +.++..+......|.  ..++   ..+ +.+ ..|++++++ .++..++|.||-
T Consensus         1 ~~~kVLvlG~-G~re~al~~~l~~~-g~~v~~~~~~~Npg~--~~~a---~~~-~~~~~~d~e~l~~-~~~~~~id~Vi~   71 (435)
T PRK06395          1 MTMKVMLVGS-GGREDAIARAIKRS-GAILFSVIGHENPSI--KKLS---KKY-LFYDEKDYDLIED-FALKNNVDIVFV   71 (435)
T ss_pred             CceEEEEECC-cHHHHHHHHHHHhC-CCeEEEEECCCChhh--hhcc---cce-eecCCCCHHHHHH-HHHHhCCCEEEE
Confidence            7899999997 87778888777765 467777654221110  0011   011 111 246666443 223467898875


Q ss_pred             cCCchhHHHHHHHHHHcCCCeE
Q 022057          113 FTDASTVYDNVKQATAFGMRSV  134 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vV  134 (303)
                      ...+......+....+.|++++
T Consensus        72 ~~d~~l~~~~~~~l~~~Gi~v~   93 (435)
T PRK06395         72 GPDPVLATPLVNNLLKRGIKVA   93 (435)
T ss_pred             CCChHHHHHHHHHHHHCCCcEE
Confidence            5443344455566677888865

>PRK06182 short chain dehydrogenase; Validated

Probab=91.86  E-value=2.2  Score=38.73  Aligned_cols=78  Identities=19%  Similarity=0.265  Sum_probs=52.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.++++. +++.  ..                  ++++..     .... +..|.+
T Consensus         4 k~vlItGasggiG~~la~~l~~-~G~~V~~~-~r~~--~~------------------l~~~~~-----~~~~~~~~Dv~   56 (273)
T PRK06182          4 KVALVTGASSGIGKATARRLAA-QGYTVYGA-ARRV--DK------------------MEDLAS-----LGVHPLSLDVT   56 (273)
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEE-eCCH--HH------------------HHHHHh-----CCCeEEEeeCC
Confidence            5799999999999999998875 68888764 3321  11                  111111     1232 456889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.....+....+.  ++++|+-..|.
T Consensus        57 ~~~~~~~~~~~~~~~~~~id~li~~ag~   84 (273)
T PRK06182         57 DEASIKAAVDTIIAEEGRIDVLVNNAGY   84 (273)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence            888887777766554  68888877764

>PRK14982 acyl-ACP reductase; Provisional

Probab=91.84  E-value=0.33  Score=46.95  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=25.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (303)
                      .+|.|+|++|.||+.+++.+....+. +|+ ++++
T Consensus       156 k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R  189 (340)
T PRK14982        156 ATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVAR  189 (340)
T ss_pred             CEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcC
Confidence            58999999999999999999754333 444 3444

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=91.84  E-value=1.1  Score=42.03  Aligned_cols=30  Identities=20%  Similarity=0.429  Sum_probs=26.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~   66 (303)
                      |||.|.|++|.+|+.+++.+.+ .+.+++++
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~-~g~~V~~~   30 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQ-NGHDVVIL   30 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHH-CCCeEEEE
Confidence            5899999999999999998885 57888874

>PLN02240 UDP-glucose 4-epimerase

Probab=91.63  E-value=1.3  Score=41.76  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=27.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      +.||.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         5 ~~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~   36 (352)
T PLN02240          5 GRTILVTGGAGYIGSHTVLQLLL-AGYKVVVID   36 (352)
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence            46899999999999999999885 468887753

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=91.61  E-value=1  Score=47.59  Aligned_cols=34  Identities=24%  Similarity=0.150  Sum_probs=27.0

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ...||+|+|+ |-||+.|+..++...+++++- +|.
T Consensus       303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~~V~l-~d~  336 (699)
T TIGR02440       303 KIKKVGILGG-GLMGGGIASVTATKAGIPVRI-KDI  336 (699)
T ss_pred             cccEEEEECC-cHHHHHHHHHHHHHcCCeEEE-EeC
Confidence            3468999998 999999998776557887764 664

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=91.47  E-value=0.61  Score=42.81  Aligned_cols=56  Identities=16%  Similarity=0.181  Sum_probs=36.9

Q ss_pred             EEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           40 INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        40 V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      |.|++|-+|+.+++.+.+. +.+++.+.....              .++.-..+++++++.    .++|+||.+.
T Consensus         2 ItGa~GfiG~~l~~~L~~~-g~~v~~~~~~~~--------------~Dl~~~~~l~~~~~~----~~~d~Vih~A   57 (306)
T PLN02725          2 VAGHRGLVGSAIVRKLEAL-GFTNLVLRTHKE--------------LDLTRQADVEAFFAK----EKPTYVILAA   57 (306)
T ss_pred             cccCCCcccHHHHHHHHhC-CCcEEEeecccc--------------CCCCCHHHHHHHHhc----cCCCEEEEee
Confidence            7899999999999999864 566654432211              122223456666653    4689999985

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=91.46  E-value=2.4  Score=43.43  Aligned_cols=127  Identities=8%  Similarity=0.064  Sum_probs=65.6

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCC--HHHHHhccccCCCccE
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSD--LTMVLGSISQSKARAV  109 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~d--l~~~l~~~~~~~~~DV  109 (303)
                      ++.=+|.|+|+ |++|+.+++.+.+ .+.+++ ++|.+.  +...++.    +.+.++ +.|  -++.+++ ..-+++|+
T Consensus       415 ~~~~hiiI~G~-G~~G~~la~~L~~-~g~~vv-vId~d~--~~~~~~~----~~g~~~i~GD~~~~~~L~~-a~i~~a~~  484 (558)
T PRK10669        415 DICNHALLVGY-GRVGSLLGEKLLA-AGIPLV-VIETSR--TRVDELR----ERGIRAVLGNAANEEIMQL-AHLDCARW  484 (558)
T ss_pred             ccCCCEEEECC-ChHHHHHHHHHHH-CCCCEE-EEECCH--HHHHHHH----HCCCeEEEcCCCCHHHHHh-cCccccCE
Confidence            44457999998 9999999998874 456665 467542  1222221    234433 221  1223321 11246786


Q ss_pred             EEEcCCchhH-HHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH
Q 022057          110 VIDFTDASTV-YDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (303)
Q Consensus       110 vIDfT~p~a~-~~~~~~al~~--g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~  175 (303)
                      +|-.++-+.. ...+..+.+.  .+++|.=.  -++++.+.+    ++.|+..++.|..-++-.+.+.+
T Consensus       485 viv~~~~~~~~~~iv~~~~~~~~~~~iiar~--~~~~~~~~l----~~~Gad~vv~p~~~~a~~i~~~l  547 (558)
T PRK10669        485 LLLTIPNGYEAGEIVASAREKRPDIEIIARA--HYDDEVAYI----TERGANQVVMGEREIARTMLELL  547 (558)
T ss_pred             EEEEcCChHHHHHHHHHHHHHCCCCeEEEEE--CCHHHHHHH----HHcCCCEEEChHHHHHHHHHHHh
Confidence            6644433222 2233333332  24444322  244444444    34567778877766665444443

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=91.42  E-value=1.1  Score=45.16  Aligned_cols=64  Identities=16%  Similarity=0.207  Sum_probs=40.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|+ |++|+.+++.+. .-+++++ +++++..  ...+..    ..|+.+ .++++++      ..+|++|..+
T Consensus       254 GKtVgVIG~-G~IGr~vA~rL~-a~Ga~Vi-V~e~dp~--~a~~A~----~~G~~~-~~leell------~~ADIVI~at  317 (476)
T PTZ00075        254 GKTVVVCGY-GDVGKGCAQALR-GFGARVV-VTEIDPI--CALQAA----MEGYQV-VTLEDVV------ETADIFVTAT  317 (476)
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEeCCch--hHHHHH----hcCcee-ccHHHHH------hcCCEEEECC
Confidence            368999998 999999999887 4678755 4544321  110101    123332 3577877      3789988664

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=91.41  E-value=0.53  Score=44.87  Aligned_cols=34  Identities=21%  Similarity=0.224  Sum_probs=26.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      .||+|+|+ |++|..++-.+...+-..=+..+|.+
T Consensus         7 ~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~   40 (315)
T PRK00066          7 NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDIN   40 (315)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            69999998 99999999988866544334467853

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=91.37  E-value=0.84  Score=43.67  Aligned_cols=96  Identities=18%  Similarity=0.218  Sum_probs=51.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee---ecC--CHHHHHhccccCCCccEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP---VMS--DLTMVLGSISQSKARAVV  110 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~---v~~--dl~~~l~~~~~~~~~DVv  110 (303)
                      -+|.|.|++|.+|...++.+.. -+...+++..++.   ... ++   .++|..   .|.  |+.+.+.++.....+|+|
T Consensus       144 ~~VLV~gaaGgVG~~aiQlAk~-~G~~~v~~~~s~~---k~~-~~---~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv  215 (326)
T COG0604         144 ETVLVHGAAGGVGSAAIQLAKA-LGATVVAVVSSSE---KLE-LL---KELGADHVINYREEDFVEQVRELTGGKGVDVV  215 (326)
T ss_pred             CEEEEecCCchHHHHHHHHHHH-cCCcEEEEecCHH---HHH-HH---HhcCCCEEEcCCcccHHHHHHHHcCCCCceEE
Confidence            3699999999999999997664 4546666665431   111 11   122211   111  133333221112246666


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCeEEeCCC
Q 022057          111 IDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~vVigTTG  139 (303)
                      +|....+...+.+......|.=+.+|.++
T Consensus       216 ~D~vG~~~~~~~l~~l~~~G~lv~ig~~~  244 (326)
T COG0604         216 LDTVGGDTFAASLAALAPGGRLVSIGALS  244 (326)
T ss_pred             EECCCHHHHHHHHHHhccCCEEEEEecCC
Confidence            66666666666555555555555566553

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=91.36  E-value=1.6  Score=41.47  Aligned_cols=32  Identities=25%  Similarity=0.235  Sum_probs=27.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      +||.|.|++|-+|+.+++.+.+ .+.++++. ++
T Consensus         5 k~ilItGatG~IG~~l~~~L~~-~G~~V~~~-~r   36 (349)
T TIGR02622         5 KKVLVTGHTGFKGSWLSLWLLE-LGAEVYGY-SL   36 (349)
T ss_pred             CEEEEECCCChhHHHHHHHHHH-CCCEEEEE-eC
Confidence            6899999999999999999885 57888764 44

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6

Probab=91.35  E-value=2.2  Score=34.05  Aligned_cols=31  Identities=16%  Similarity=0.206  Sum_probs=21.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      |||.|+|. |.=-.+++..+.+++..+-+.+.
T Consensus         1 MkVLviGs-GgREHAia~~l~~s~~v~~v~~a   31 (100)
T PF02844_consen    1 MKVLVIGS-GGREHAIAWKLSQSPSVEEVYVA   31 (100)
T ss_dssp             EEEEEEES-SHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCCCCEEEEe
Confidence            79999995 84445567777777776544433

3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.32  E-value=6.6  Score=38.84  Aligned_cols=121  Identities=12%  Similarity=0.136  Sum_probs=65.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC-CCeeecC--CHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVMS--DLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~-~gv~v~~--dl~~~l~~~~~~~~~DVvID  112 (303)
                      =-|+|+|. |+.|..+++.+. ..+.++++ .|..........+.   .. .|++++.  .-.+.+      .++|+||-
T Consensus         7 ~~~~v~G~-G~sG~s~a~~L~-~~G~~v~~-~D~~~~~~~~~~l~---~~~~g~~~~~~~~~~~~~------~~~d~vV~   74 (448)
T PRK03803          7 GLHIVVGL-GKTGLSVVRFLA-RQGIPFAV-MDSREQPPGLDTLA---REFPDVELRCGGFDCELL------VQASEIII   74 (448)
T ss_pred             CeEEEEee-cHhHHHHHHHHH-hCCCeEEE-EeCCCCchhHHHHH---hhcCCcEEEeCCCChHHh------cCCCEEEE
Confidence            35899998 999999888666 56887664 77532111111221   11 3666632  123344      36898875


Q ss_pred             cCC-chhHHHHHHHHHHcCCCeE--------------EeCCCCCHH--HHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          113 FTD-ASTVYDNVKQATAFGMRSV--------------VYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       113 fT~-p~a~~~~~~~al~~g~~vV--------------igTTG~~~e--~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      .+. |. ..+.+..|.++|+|++              |+-||-.-.  -...|..+-++.|..++...|+....
T Consensus        75 sp~i~~-~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~  147 (448)
T PRK03803         75 SPGLAL-DTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPA  147 (448)
T ss_pred             CCCCCC-CCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHH
Confidence            442 22 2334555556666554              344443211  12234444455666778888855443

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=91.28  E-value=0.88  Score=43.64  Aligned_cols=25  Identities=20%  Similarity=0.486  Sum_probs=21.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR   59 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~   59 (303)
                      ++||+|+|++|.+|..++-.+...+
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~~~~   27 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIASGE   27 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCC
Confidence            5999999988999999998887554

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=91.27  E-value=0.63  Score=43.07  Aligned_cols=127  Identities=20%  Similarity=0.128  Sum_probs=64.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ..++.|+|+ |.||+.++..+.+. +.++. +++++.  ..+.+++......+.....++++...     .++|+||.+|
T Consensus       117 ~k~vliiGa-Gg~g~aia~~L~~~-g~~v~-v~~R~~--~~~~~la~~~~~~~~~~~~~~~~~~~-----~~~DivInat  186 (270)
T TIGR00507       117 NQRVLIIGA-GGAARAVALPLLKA-DCNVI-IANRTV--SKAEELAERFQRYGEIQAFSMDELPL-----HRVDLIINAT  186 (270)
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHHHHHhhcCceEEechhhhcc-----cCccEEEECC
Confidence            358999998 99999999988854 56654 556542  12222221101112111123333221     3689999888


Q ss_pred             Cchh---HH--HHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHh
Q 022057          115 DAST---VY--DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (303)
Q Consensus       115 ~p~a---~~--~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~  179 (303)
                      +...   ..  ......++.+. +|+-..-...+.  .+.+.|++.|.+++-    .+++ |+.|.+.++
T Consensus       187 p~gm~~~~~~~~~~~~~l~~~~-~v~D~~y~p~~T--~ll~~A~~~G~~~vd----G~~M-l~~Qa~~~f  248 (270)
T TIGR00507       187 SAGMSGNIDEPPVPAEKLKEGM-VVYDMVYNPGET--PFLAEAKSLGTKTID----GLGM-LVAQAALAF  248 (270)
T ss_pred             CCCCCCCCCCCCCCHHHcCCCC-EEEEeccCCCCC--HHHHHHHHCCCeeeC----CHHH-HHHHHHHHH
Confidence            5321   10  11123344444 343322111111  477788888887553    2222 345555444

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]

Probab=91.27  E-value=1.5  Score=45.70  Aligned_cols=111  Identities=14%  Similarity=0.155  Sum_probs=76.7

Q ss_pred             eeEEEEcCCcH---HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKE---IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~Gr---MG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      --|+|+|++++   +|+.+.+.+.+..+-++..+ .+..     .+      -.|++.|++..++-      ..+|+.|-
T Consensus        11 ~svavigas~~~~~vg~~i~~nL~~~g~g~i~PV-np~~-----~~------v~G~~ay~s~~~lp------~~~dlav~   72 (598)
T COG1042          11 KSIAVIGASERPGKLGYEILRNLLEYGQGKIYPV-NPKY-----DE------VLGVKAYTSVADLP------DAPDLAVI   72 (598)
T ss_pred             ceEEEeeccCCcchhHHHHHHHHHhcCCCceEec-Cccc-----cc------cccccccchHhhCC------CCCCeeEE
Confidence            46999998866   67778888776553344432 2211     12      24678888888775      47999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEe-CCCCCH------HHHHHHHHHhhhcCCeEEEcCCC
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVY-VPHIQL------ETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVig-TTG~~~------e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      .+++..+.+.++.|-+.|+...+- +-||.+      +-.+++.++|++.++. ++.||-
T Consensus        73 ~v~~~~~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a~~~~~r-ligPn~  131 (598)
T COG1042          73 VVPAKVVPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAARKYGMR-IIGPNC  131 (598)
T ss_pred             EechhhhHHHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHHHHHhcCce-Eecccc
Confidence            999999999999999999755544 447653      2223455578877776 667884

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=91.22  E-value=2.4  Score=37.12  Aligned_cols=84  Identities=24%  Similarity=0.311  Sum_probs=48.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE-EEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV-VIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV-vIDfT  114 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.++ .+++++.  .+...+               .+.+..  ...++.. ..|++
T Consensus         6 ~~ilItGasg~iG~~l~~~l~~-~g~~v-~~~~r~~--~~~~~~---------------~~~~~~--~~~~~~~~~~D~~   64 (246)
T PRK05653          6 KTALVTGASRGIGRAIALRLAA-DGAKV-VIYDSNE--EAAEAL---------------AAELRA--AGGEARVLVFDVS   64 (246)
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEE-EEEeCCh--hHHHHH---------------HHHHHh--cCCceEEEEccCC
Confidence            6899999999999999999885 47775 4455432  111110               011110  0012222 25788


Q ss_pred             CchhHHHHHHHHHH--cCCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATA--FGMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~--~g~~vVigTTG~  140 (303)
                      .++...+.+....+  ..++.|+-..|.
T Consensus        65 ~~~~~~~~~~~~~~~~~~id~vi~~ag~   92 (246)
T PRK05653         65 DEAAVRALIEAAVEAFGALDILVNNAGI   92 (246)
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence            88777666654433  356777776653

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=91.21  E-value=0.85  Score=39.93  Aligned_cols=31  Identities=39%  Similarity=0.434  Sum_probs=24.9

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      |.|+|++|-+|+.+++.+.+ .+.+++....+
T Consensus         1 IlI~GatG~iG~~l~~~l~~-~g~~v~~~~~~   31 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLK-KGHEVIVLSRS   31 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTTEEEEEESC
T ss_pred             EEEEccCCHHHHHHHHHHHH-cCCcccccccc
Confidence            68999999999999999884 56777754443

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=91.18  E-value=1  Score=42.95  Aligned_cols=34  Identities=21%  Similarity=0.187  Sum_probs=25.4

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      ||+|+|++|++|..++-.+....-..=...+|.+
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIA   34 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            7999999899999999988766433333457754

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=91.17  E-value=0.59  Score=44.86  Aligned_cols=115  Identities=12%  Similarity=0.108  Sum_probs=68.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEE---EEEec-CCCCcchhhhhcCCCCCCeeecCCHHH-HHhccccCCCccE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVA---GAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTM-VLGSISQSKARAV  109 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLv---g~vd~-~~~g~d~~~~~g~~~~~gv~v~~dl~~-~l~~~~~~~~~DV  109 (303)
                      .++|+| |+||..|+.+.+.+.+ .++.+-   ..-.. ...|+... +.|    ..+.+. ++++ .+      .++|+
T Consensus         3 ~~~iAi-GATg~VG~~~l~~Lee-r~fpv~~l~l~~s~~~s~gk~i~-f~g----~~~~V~-~l~~~~f------~~vDi   68 (322)
T PRK06901          3 TLNIAI-AAEFELSEKLLEALEQ-SDLEIEQISIVEIEPFGEEQGIR-FNN----KAVEQI-APEEVEW------ADFNY   68 (322)
T ss_pred             cceEEE-ecCcHHHHHHHHHHHh-cCCchhheeecccccccCCCEEE-ECC----EEEEEE-ECCccCc------ccCCE
Confidence            479999 9999999999997664 455322   11111 12232221 111    122221 1222 23      47999


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCeEEeCCCC-------------CHHHHHHHHHHhhhcCCeEEEcCCCcHHHH
Q 022057          110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHI-------------QLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~g~~vVigTTG~-------------~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~  170 (303)
                      ++ |+..+...+....+.++|..||--+..|             +++.   +..+- +  -.++-.||=|.-..
T Consensus        69 a~-fag~~~s~~~ap~a~~aG~~VIDnSsa~Rmd~dVPLVVPEVN~e~---l~~~~-~--~~IIanPNCsTi~l  135 (322)
T PRK06901         69 VF-FAGKMAQAEHLAQAAEAGCIVIDLYGICAALANVPVVVPSVNDEQ---LAELR-Q--RNIVSLPDPQVSQL  135 (322)
T ss_pred             EE-EcCHHHHHHHHHHHHHCCCEEEECChHhhCCCCCCeecccCCHHH---HhcCc-C--CCEEECCcHHHHHH
Confidence            88 5777888999999999999888665443             3333   22221 2  24788899776553

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=91.14  E-value=0.66  Score=42.75  Aligned_cols=69  Identities=17%  Similarity=0.193  Sum_probs=41.6

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcC--C-cEEEEEEecCC---C--CcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE
Q 022057           38 VIINGAVKEIGRAAVIAVTKAR--G-MEVAGAIDSHS---V--GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~--~-~eLvg~vd~~~---~--g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (303)
                      |+|+|+.|.||..++..+...+  . .+| ..+|.+.   .  ..|+...........+..++|+++.+      .++|+
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el-~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~------~~aDi   73 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIEL-VLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAF------KDADV   73 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEE-EEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHh------CCCCE
Confidence            6899988999999999887654  2 344 4567532   0  11222222110023455567877777      48999


Q ss_pred             EEEc
Q 022057          110 VIDF  113 (303)
Q Consensus       110 vIDf  113 (303)
                      ||..
T Consensus        74 Vv~t   77 (263)
T cd00650          74 VIIT   77 (263)
T ss_pred             EEEC
Confidence            9863

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=91.09  E-value=1.5  Score=42.99  Aligned_cols=59  Identities=19%  Similarity=0.107  Sum_probs=40.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .+|||+|+ |+||+.+++.+. .-|+++.+ +|+...  ..        . +..-+.+++++++      ++|+|+-..
T Consensus       117 ktvGIIG~-G~IG~~va~~l~-a~G~~V~~-~Dp~~~--~~--------~-~~~~~~~l~ell~------~aDiV~lh~  175 (381)
T PRK00257        117 RTYGVVGA-GHVGGRLVRVLR-GLGWKVLV-CDPPRQ--EA--------E-GDGDFVSLERILE------ECDVISLHT  175 (381)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-ECCccc--cc--------c-cCccccCHHHHHh------hCCEEEEeC
Confidence            68999998 999999999877 46888875 565321  00        0 1112457888884      688887544

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=91.08  E-value=1.3  Score=40.13  Aligned_cols=30  Identities=37%  Similarity=0.445  Sum_probs=25.3

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      |.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus         1 vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   30 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTK-DGHEVTILTR   30 (292)
T ss_pred             CEEEcccchhhHHHHHHHHH-cCCEEEEEeC
Confidence            57999999999999999885 5789887654

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=91.07  E-value=0.47  Score=44.80  Aligned_cols=35  Identities=20%  Similarity=0.216  Sum_probs=31.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      +.||+|.|+.|++||-+.-.+..+|.+.-.+.+|.
T Consensus        28 ~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi   62 (345)
T KOG1494|consen   28 GLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI   62 (345)
T ss_pred             cceEEEEecCCccCccHHHHHhcCcccceeeeeec
Confidence            68999999999999999998888998877788884

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=91.05  E-value=4.8  Score=38.18  Aligned_cols=33  Identities=30%  Similarity=0.404  Sum_probs=25.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (303)
                      |||+|+|++|.+|..++..+...+-. +|+. +|+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~l-vd~   34 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINL-ISR   34 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEE-EEC
Confidence            68999999899999999988865433 4554 454

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK05884 short chain dehydrogenase; Provisional

Probab=91.03  E-value=1.9  Score=38.32  Aligned_cols=30  Identities=20%  Similarity=0.440  Sum_probs=25.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~   66 (303)
                      ||+.|.|++|++|+.+++.+.+ .+.+++..
T Consensus         1 m~vlItGas~giG~~ia~~l~~-~g~~v~~~   30 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRN-DGHKVTLV   30 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHH-CCCEEEEE
Confidence            4899999999999999999874 57787764

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=90.99  E-value=1.3  Score=40.20  Aligned_cols=87  Identities=22%  Similarity=0.258  Sum_probs=50.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcE--EEEEEecCC---CCcc------hhhhhcCCCCCC-eeecCCHHHHHhcccc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGME--VAGAIDSHS---VGED------IGMVCDMEQPLE-IPVMSDLTMVLGSISQ  103 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~e--Lvg~vd~~~---~g~d------~~~~~g~~~~~g-v~v~~dl~~~l~~~~~  103 (303)
                      .||.|+|+ |.+|+.++..+.. .++.  =+.++|++.   ..+.      ..+++.   ..+ -....++.+.+     
T Consensus        26 ~rvlvlGA-GgAg~aiA~~L~~-~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~---~~~~~~~~~~l~~~l-----   95 (226)
T cd05311          26 VKIVINGA-GAAGIAIARLLLA-AGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAK---ETNPEKTGGTLKEAL-----   95 (226)
T ss_pred             CEEEEECc-hHHHHHHHHHHHH-cCcCcceEEEEeCCCccccccchhhhHHHHHHHH---HhccCcccCCHHHHH-----
Confidence            58999998 9999999998874 4766  567788751   0110      011221   111 01113666666     


Q ss_pred             CCCccEEEEcCCchhH-HHHHHHHHHcCCCeEE
Q 022057          104 SKARAVVIDFTDASTV-YDNVKQATAFGMRSVV  135 (303)
Q Consensus       104 ~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVi  135 (303)
                       .++|++|..|++-.. .+.++...  ..|+|.
T Consensus        96 -~~~dvlIgaT~~G~~~~~~l~~m~--~~~ivf  125 (226)
T cd05311          96 -KGADVFIGVSRPGVVKKEMIKKMA--KDPIVF  125 (226)
T ss_pred             -hcCCEEEeCCCCCCCCHHHHHhhC--CCCEEE
Confidence             369999998864433 34444333  334444

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=90.91  E-value=11  Score=33.65  Aligned_cols=173  Identities=17%  Similarity=0.089  Sum_probs=88.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf  113 (303)
                      ..+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  .....+.              +++... .....+. +..|.
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~-~g~~vi~-~~r~~--~~~~~~~--------------~~~~~~-~~~~~~~~~~~D~   62 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAE-EGYRVAV-ADINS--EKAANVA--------------QEINAE-YGEGMAYGFGADA   62 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHHh-cCCceeEEEEccC
Confidence            34699999999999999999885 5788765 44432  1111110              111100 0001122 44588


Q ss_pred             CCchhHHHHHHHHHH--cCCCeEEeCCCCC------HHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCc
Q 022057          114 TDASTVYDNVKQATA--FGMRSVVYVPHIQ------LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKN  185 (303)
Q Consensus       114 T~p~a~~~~~~~al~--~g~~vVigTTG~~------~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~d  185 (303)
                      +.++.....+..+.+  .++++|+=+.|..      +...+.+++..+         .|+---.++++.+.+.+.+...+
T Consensus        63 ~~~~~i~~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~---------~n~~~~~~l~~~~~~~l~~~~~~  133 (259)
T PRK12384         63 TSEQSVLALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQ---------VNLVGYFLCAREFSRLMIRDGIQ  133 (259)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHH---------hccHHHHHHHHHHHHHHHhCCCC
Confidence            888877776666544  3567787776632      111122222222         22222334455555544322211


Q ss_pred             EEEEEc---c--C-CCCCCCcHHHHHHHHHHHh-cCcccccCcccccccccCccccCCceeEEEEEcCCCcee
Q 022057          186 VEIVES---R--P-NARDFPSPDATQIANNLSN-LGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSS  251 (303)
Q Consensus       186 ieIiE~---H--h-~K~DaPSGTA~~l~~~i~~-~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg~  251 (303)
                      --|+=.   .  . .....|-++++.-.+.+.+ +...                +.+.+|+|.++|.|.++..
T Consensus       134 ~~iv~~ss~~~~~~~~~~~~Y~~sKaa~~~l~~~la~e----------------~~~~gi~v~~v~pg~~~~~  190 (259)
T PRK12384        134 GRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQSLALD----------------LAEYGITVHSLMLGNLLKS  190 (259)
T ss_pred             cEEEEecCcccccCCCCCchhHHHHHHHHHHHHHHHHH----------------HHHcCcEEEEEecCCcccc
Confidence            122221   1  1 2344566777765544432 1000                0125699999999987654

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=90.82  E-value=2  Score=38.43  Aligned_cols=81  Identities=15%  Similarity=0.230  Sum_probs=51.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      |+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  .++..+               .+.+.     .++. +-.|.+
T Consensus         1 ~~vlItGasg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~~~-----~~~~~~~~Dl~   56 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQ-QGHKVIA-TGRRQ--ERLQEL---------------KDELG-----DNLYIAQLDVR   56 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH---------------HHHhc-----cceEEEEecCC
Confidence            5799999999999999999885 5788765 44431  111111               11111     1232 345888


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++...+.+....+.  ++++|+-..|.
T Consensus        57 ~~~~i~~~~~~~~~~~~~id~vi~~ag~   84 (248)
T PRK10538         57 NRAAIEEMLASLPAEWRNIDVLVNNAGL   84 (248)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            888877776655543  68888866653

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.67  E-value=2.3  Score=37.43  Aligned_cols=86  Identities=23%  Similarity=0.210  Sum_probs=53.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf  113 (303)
                      +.++.|.|++|.+|+.+++.+.+ .+.+++..++++.  ....++               .+.+..  ....+. +..|+
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~-~g~~v~~~~~r~~--~~~~~~---------------~~~~~~--~~~~~~~~~~D~   64 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAK-EGAKVVIAYDINE--EAAQEL---------------LEEIKE--EGGDAIAVKADV   64 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHH---------------HHHHHh--cCCeEEEEECCC
Confidence            45899999999999999998874 5888876645431  111111               111110  001233 23588


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      +.++.+.+.+....+.  ++++|+-..|.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~   93 (247)
T PRK05565         65 SSEEDVENLVEQIVEKFGKIDILVNNAGI   93 (247)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence            8888877766655543  68888877764

>PRK06932 glycerate dehydrogenase; Provisional

Probab=90.64  E-value=0.77  Score=43.75  Aligned_cols=58  Identities=16%  Similarity=0.071  Sum_probs=41.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .+|+|+|+ |++|+.+++.+. .=++++.+ +|+..  .  .       .... -+.++++++.      .+|+|+-..
T Consensus       148 ktvgIiG~-G~IG~~va~~l~-~fg~~V~~-~~~~~--~--~-------~~~~-~~~~l~ell~------~sDiv~l~~  205 (314)
T PRK06932        148 STLGVFGK-GCLGTEVGRLAQ-ALGMKVLY-AEHKG--A--S-------VCRE-GYTPFEEVLK------QADIVTLHC  205 (314)
T ss_pred             CEEEEECC-CHHHHHHHHHHh-cCCCEEEE-ECCCc--c--c-------cccc-ccCCHHHHHH------hCCEEEEcC
Confidence            68999997 999999999776 45899876 55431  0  0       0111 1458999994      799998654

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=90.62  E-value=0.45  Score=44.66  Aligned_cols=70  Identities=23%  Similarity=0.209  Sum_probs=42.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCC---CCeeecCCHHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQP---LEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~---~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      .||.|+|+ |.+|+.++..+.. .++.=+-++|++.  ..+..++.. ...   ..+...+++.+.+      .++|+||
T Consensus       128 k~vlIlGa-GGaaraia~aL~~-~G~~~I~I~nR~~--~ka~~la~~l~~~~~~~~~~~~~~~~~~~------~~aDiVI  197 (284)
T PRK12549        128 ERVVQLGA-GGAGAAVAHALLT-LGVERLTIFDVDP--ARAAALADELNARFPAARATAGSDLAAAL------AAADGLV  197 (284)
T ss_pred             CEEEEECC-cHHHHHHHHHHHH-cCCCEEEEECCCH--HHHHHHHHHHHhhCCCeEEEeccchHhhh------CCCCEEE
Confidence            58999998 9999999998875 4564466777642  222222210 001   1122234455555      4799999


Q ss_pred             EcCC
Q 022057          112 DFTD  115 (303)
Q Consensus       112 DfT~  115 (303)
                      ..|+
T Consensus       198 naTp  201 (284)
T PRK12549        198 HATP  201 (284)
T ss_pred             ECCc
Confidence            9885

>PRK09134 short chain dehydrogenase; Provisional

Probab=90.62  E-value=4.7  Score=36.12  Aligned_cols=87  Identities=18%  Similarity=0.295  Sum_probs=52.3

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID  112 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvID  112 (303)
                      ++.++.|.|++|.+|+.+++.+.+ .+..++....++.  .....+.              +++...   ....+ +..|
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~-~g~~v~~~~~~~~--~~~~~~~--------------~~~~~~---~~~~~~~~~D   67 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAA-HGFDVAVHYNRSR--DEAEALA--------------AEIRAL---GRRAVALQAD   67 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHHH--------------HHHHhc---CCeEEEEEcC
Confidence            346899999999999999998874 6778876554321  0111100              111100   01233 3457


Q ss_pred             cCCchhHHHHHHHHHH--cCCCeEEeCCCC
Q 022057          113 FTDASTVYDNVKQATA--FGMRSVVYVPHI  140 (303)
Q Consensus       113 fT~p~a~~~~~~~al~--~g~~vVigTTG~  140 (303)
                      .+.++...+.+..+.+  -++++|+-..|.
T Consensus        68 l~d~~~~~~~~~~~~~~~~~iD~vi~~ag~   97 (258)
T PRK09134         68 LADEAEVRALVARASAALGPITLLVNNASL   97 (258)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCcC
Confidence            8888877777666554  247888877764

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=90.62  E-value=1.3  Score=39.86  Aligned_cols=83  Identities=20%  Similarity=0.262  Sum_probs=52.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT  114 (303)
                      |++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+.              .+++-+    ..+. -+..|.+
T Consensus         1 m~vlItGas~gIG~aia~~l~~-~G~~V~~-~~r~~--~~~~~~--------------~~~l~~----~~~~~~~~~Dv~   58 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLK-KGARVVI-SSRNE--ENLEKA--------------LKELKE----YGEVYAVKADLS   58 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHH-cCCEEEE-EeCCH--HHHHHH--------------HHHHHh----cCCceEEEcCCC
Confidence            5899999999999999999875 5777654 44431  111111              011110    0112 2356888


Q ss_pred             CchhHHHHHHHHHH--cCCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATA--FGMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~--~g~~vVigTTG~  140 (303)
                      .++...+.+..+.+  -++++|+-..|.
T Consensus        59 d~~~~~~~~~~~~~~~g~id~li~naG~   86 (259)
T PRK08340         59 DKDDLKNLVKEAWELLGGIDALVWNAGN   86 (259)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            88888887776655  358888877664

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=90.60  E-value=2.3  Score=44.39  Aligned_cols=32  Identities=13%  Similarity=0.159  Sum_probs=27.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGA   66 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~   66 (303)
                      ++||.|.|++|-+|+.+++.+.+. ++.++++.
T Consensus         6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~   38 (668)
T PLN02260          6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVL   38 (668)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEE
Confidence            579999999999999999999865 57888754

>PRK15076 alpha-galactosidase; Provisional

Probab=90.47  E-value=4.1  Score=40.67  Aligned_cols=156  Identities=15%  Similarity=0.162  Sum_probs=82.3

Q ss_pred             ceeEEEEcCCcHHHHHH--HHHHHh---cCCcEEEEEEecCCCCcc-hhhh----h-cCCCCCCeeecCCHHHHHhcccc
Q 022057           35 NIKVIINGAVKEIGRAA--VIAVTK---ARGMEVAGAIDSHSVGED-IGMV----C-DMEQPLEIPVMSDLTMVLGSISQ  103 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i--~~~i~~---~~~~eLvg~vd~~~~g~d-~~~~----~-g~~~~~gv~v~~dl~~~l~~~~~  103 (303)
                      |+||+|+|+ |.||-..  ++.+..   .++.||+ .+|.+..-.+ +..+    . .......+..++|+.+++     
T Consensus         1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evv-LvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal-----   73 (431)
T PRK15076          1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIA-LMDIDPERLEESEIVARKLAESLGASAKITATTDRREAL-----   73 (431)
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHh-----
Confidence            479999998 9998443  224432   2334544 5775320001 1111    1 001123455578888887     


Q ss_pred             CCCccEEEEcCCch--hHH--HHHHHHHHcCCCe-EEeCCC---C-----CH----HHHHHHHHHhhhcCCeEEEcCCCc
Q 022057          104 SKARAVVIDFTDAS--TVY--DNVKQATAFGMRS-VVYVPH---I-----QL----ETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus       104 ~~~~DVvIDfT~p~--a~~--~~~~~al~~g~~v-VigTTG---~-----~~----e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                       .++|+||......  ...  .--+..+++|+-- +..|+|   +     +-    +-.+.|+++|-+   .+++  |||
T Consensus        74 -~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~---a~ii--n~t  147 (431)
T PRK15076         74 -QGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPD---ALLL--NYV  147 (431)
T ss_pred             -CCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCC---eEEE--EcC
Confidence             4899998755332  111  3346678999862 224543   2     11    223334444422   3332  566


Q ss_pred             HHHHHHHHHHHHhccCCCcEEEEEccCCCCCCCcHHHHHHHHHHH
Q 022057          167 IGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLS  211 (303)
Q Consensus       167 iGv~ll~~~a~~~~~~~~dieIiE~Hh~K~DaPSGTA~~l~~~i~  211 (303)
                      =-+-++.+++.   ++ +...++=.    -|.|.+|+..+++.+.
T Consensus       148 NP~divt~~~~---~~-~~~rviG~----c~~~~~~~~~ia~~l~  184 (431)
T PRK15076        148 NPMAMNTWAMN---RY-PGIKTVGL----CHSVQGTAEQLARDLG  184 (431)
T ss_pred             ChHHHHHHHHh---cC-CCCCEEEE----CCCHHHHHHHHHHHhC
Confidence            56656666554   22 33344444    3568889988888764

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=90.43  E-value=2.5  Score=40.89  Aligned_cols=104  Identities=15%  Similarity=0.017  Sum_probs=59.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .+|+|+|+ |++|+.+++.+.. =++.+.. ..+. .......       ++... +.|+++++      .++|++|-..
T Consensus       163 K~vgilG~-G~IG~~ia~rL~~-Fg~~i~y-~~r~~~~~~~~~-------~~~~~-~~d~~~~~------~~sD~ivv~~  225 (336)
T KOG0069|consen  163 KTVGILGL-GRIGKAIAKRLKP-FGCVILY-HSRTQLPPEEAY-------EYYAE-FVDIEELL------ANSDVIVVNC  225 (336)
T ss_pred             CEEEEecC-cHHHHHHHHhhhh-ccceeee-ecccCCchhhHH-------Hhccc-ccCHHHHH------hhCCEEEEec
Confidence            68999998 9999999999886 3444433 3322 1111111       11112 45888888      4799888654


Q ss_pred             -CchhH--HHHHHHHHHcCCCeEEeCCCCCH-HHHHHHHHHhhhcC
Q 022057          115 -DASTV--YDNVKQATAFGMRSVVYVPHIQL-ETVSALSAFCDKAS  156 (303)
Q Consensus       115 -~p~a~--~~~~~~al~~g~~vVigTTG~~~-e~~~~L~~~a~~~~  156 (303)
                       ..+.+  .-+-+.+...+.-+|+=.++--. =+.+.+.++.++..
T Consensus       226 pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~  271 (336)
T KOG0069|consen  226 PLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGK  271 (336)
T ss_pred             CCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCC
Confidence             22333  34446666777766665553110 01135666666543

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=90.39  E-value=1.5  Score=43.46  Aligned_cols=117  Identities=18%  Similarity=0.253  Sum_probs=68.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCC-------CCCCeeecCCHHHHHhccc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-------QPLEIPVMSDLTMVLGSIS  102 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~-------~~~gv~v~~dl~~~l~~~~  102 (303)
                      -.||+|-|. |+.|+..++.+.+. +.+||++-|+.     ..|-|...+....       ...+...... ++++.   
T Consensus       207 G~rVaVQG~-GNVg~~aa~~l~~~-GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~---  280 (411)
T COG0334         207 GARVAVQGF-GNVGQYAAEKLHEL-GAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLE---  280 (411)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHc-CCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-ccccc---
Confidence            479999997 99999999988755 99999988853     2355543332111       1112222222 56665   


Q ss_pred             cCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (303)
Q Consensus       103 ~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~Si  167 (303)
                        .++||++=+...... .+++.....   .+|.|-. |-+..+..++..   +.  .+++.|-+..
T Consensus       281 --~~cDIl~PcA~~n~I~~~na~~l~a---k~V~EgAN~P~t~eA~~i~~---er--GIl~~PD~la  337 (411)
T COG0334         281 --VDCDILIPCALENVITEDNADQLKA---KIVVEGANGPTTPEADEILL---ER--GILVVPDILA  337 (411)
T ss_pred             --ccCcEEcccccccccchhhHHHhhh---cEEEeccCCCCCHHHHHHHH---HC--CCEEcChhhc
Confidence              589999866544433 445543332   3777755 433233333332   43  5677776643

>PRK06487 glycerate dehydrogenase; Provisional

Probab=90.36  E-value=0.88  Score=43.40  Aligned_cols=57  Identities=18%  Similarity=0.026  Sum_probs=40.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .+|+|+|+ |++|+.+++.+. .=++++.+ +|+..  .+          ..+. +.++++++.      .+|+|+...
T Consensus       149 ktvgIiG~-G~IG~~vA~~l~-~fgm~V~~-~~~~~--~~----------~~~~-~~~l~ell~------~sDiv~l~l  205 (317)
T PRK06487        149 KTLGLLGH-GELGGAVARLAE-AFGMRVLI-GQLPG--RP----------ARPD-RLPLDELLP------QVDALTLHC  205 (317)
T ss_pred             CEEEEECC-CHHHHHHHHHHh-hCCCEEEE-ECCCC--Cc----------cccc-ccCHHHHHH------hCCEEEECC
Confidence            68999998 999999999876 45888875 55431  11          0011 347999994      789998654

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.35  E-value=1.8  Score=45.93  Aligned_cols=32  Identities=19%  Similarity=0.237  Sum_probs=25.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      .-||+|+|+ |.||+.|+..++ ..+++++ .+|.
T Consensus       313 i~~v~ViGa-G~mG~gIA~~~a-~~G~~V~-l~d~  344 (715)
T PRK11730        313 VKQAAVLGA-GIMGGGIAYQSA-SKGVPVI-MKDI  344 (715)
T ss_pred             cceEEEECC-chhHHHHHHHHH-hCCCeEE-EEeC
Confidence            458999998 999999999777 4588776 3664

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=90.32  E-value=3.5  Score=40.92  Aligned_cols=159  Identities=15%  Similarity=0.079  Sum_probs=82.3

Q ss_pred             eeEEEEcCCcHHHHHHHH--HHH---hcCCcEEEEEEecCCC-----Ccchhhhh-cCCCCCCeeecCCHHHHHhccccC
Q 022057           36 IKVIINGAVKEIGRAAVI--AVT---KARGMEVAGAIDSHSV-----GEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQS  104 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~--~i~---~~~~~eLvg~vd~~~~-----g~d~~~~~-g~~~~~gv~v~~dl~~~l~~~~~~  104 (303)
                      +||+|+|+ |.||...+-  .+.   ..++.+|+ .+|.+..     ..++.... .......+..++|+++++      
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~-L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal------   72 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIA-LMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREAL------   72 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHh------
Confidence            58999998 999998443  343   34555655 4675320     11111111 111123456688998888      


Q ss_pred             CCccEEEEcCCchhHHH---HHHHHHHcCCCeEEeCC-C---CC-----HHHHHHHHHHhhhcCCeEEEcCCCcHHHHHH
Q 022057          105 KARAVVIDFTDASTVYD---NVKQATAFGMRSVVYVP-H---IQ-----LETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (303)
Q Consensus       105 ~~~DVvIDfT~p~a~~~---~~~~al~~g~~vVigTT-G---~~-----~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll  172 (303)
                      .++|+||....+.....   .-+..+++|+---++-| |   +.     -....+|.+..++. .|=.|.=||+=-+.++
T Consensus        73 ~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~-~p~a~~i~~tNPv~i~  151 (423)
T cd05297          73 DGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEEL-CPDAWLLNYANPMAEL  151 (423)
T ss_pred             cCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHH-CCCCEEEEcCChHHHH
Confidence            48999997654433322   22366777765333323 2   11     11122222222221 1223444666666667


Q ss_pred             HHHHHHhccCCCcEEEEEccCCCCCCCcHHHHHHHHHHH
Q 022057          173 QQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLS  211 (303)
Q Consensus       173 ~~~a~~~~~~~~dieIiE~Hh~K~DaPSGTA~~l~~~i~  211 (303)
                      .+++....+    +.++-+=    |.|.++...+++.+.
T Consensus       152 t~~~~k~~~----~rviG~c----~~~~~~~~~~a~~l~  182 (423)
T cd05297         152 TWALNRYTP----IKTVGLC----HGVQGTAEQLAKLLG  182 (423)
T ss_pred             HHHHHHhCC----CCEEEEC----CcHHHHHHHHHHHhC
Confidence            666654432    3444442    226677777777664

linked to 3D####ucture

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.32  E-value=1.4  Score=38.60  Aligned_cols=86  Identities=20%  Similarity=0.253  Sum_probs=51.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf  113 (303)
                      +.+|.|.|++|.+|+.+++.+.+ .+.+++....++.  .....+               .+.+..  ...+.. +..|+
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~~-~g~~v~~~~~~~~--~~~~~~---------------~~~~~~--~~~~~~~~~~D~   65 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLAR-AGADVVVHYRSDE--EAAEEL---------------VEAVEA--LGRRAQAVQADV   65 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHH-CCCeEEEEeCCCH--HHHHHH---------------HHHHHh--cCCceEEEECCc
Confidence            46899999999999999998875 5777765554321  110100               111110  001222 34578


Q ss_pred             CCchhHHHHHHHHHH--cCCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATA--FGMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~--~g~~vVigTTG~  140 (303)
                      +.++.+.+.+....+  .++.+|+=..|.
T Consensus        66 ~~~~~v~~~~~~~~~~~~~id~vi~~ag~   94 (249)
T PRK12825         66 TDKAALEAAVAAAVERFGRIDILVNNAGI   94 (249)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence            888877776655544  367888876663

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=90.31  E-value=0.96  Score=43.84  Aligned_cols=33  Identities=18%  Similarity=0.187  Sum_probs=23.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      ..+|.|.|++|.+|+..++.+.. -++..+..+.
T Consensus       158 g~~vLv~ggsggVG~~aiQlAk~-~~~~~v~t~~  190 (347)
T KOG1198|consen  158 GKSVLVLGGSGGVGTAAIQLAKH-AGAIKVVTAC  190 (347)
T ss_pred             CCeEEEEeCCcHHHHHHHHHHHh-cCCcEEEEEc
Confidence            36799999999999999996664 4444444343

>PRK06823 ornithine cyclodeaminase; Validated

Probab=90.31  E-value=0.61  Score=44.53  Aligned_cols=88  Identities=10%  Similarity=0.044  Sum_probs=58.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC--CCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ--PLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~--~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      -+++|+|+ |.+++.+++++..-..++=+-+++++.  ..+..++...+  ...+.+.+|.++++      .++|||+-.
T Consensus       129 ~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~--~~a~~~~~~~~~~~~~v~~~~~~~~av------~~ADIV~ta  199 (315)
T PRK06823        129 SAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSE--TALEEYRQYAQALGFAVNTTLDAAEVA------HAANLIVTT  199 (315)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHhcCCcEEEECCHHHHh------cCCCEEEEe
Confidence            57999997 999999999998877888888888753  22222221111  23345578899988      489999866


Q ss_pred             CCchhHHHHH-HHHHHcCCCeE
Q 022057          114 TDASTVYDNV-KQATAFGMRSV  134 (303)
Q Consensus       114 T~p~a~~~~~-~~al~~g~~vV  134 (303)
                      |+..  .+.+ ...++-|.++.
T Consensus       200 T~s~--~P~~~~~~l~~G~hi~  219 (315)
T PRK06823        200 TPSR--EPLLQAEDIQPGTHIT  219 (315)
T ss_pred             cCCC--CceeCHHHcCCCcEEE
Confidence            6321  1222 23457788866

>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=90.31  E-value=2.2  Score=41.87  Aligned_cols=94  Identities=14%  Similarity=0.073  Sum_probs=56.8

Q ss_pred             EEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhh----------------hhcCCCCCCeeecC---CHHH
Q 022057           40 INGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGM----------------VCDMEQPLEIPVMS---DLTM   96 (303)
Q Consensus        40 V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g---~d~~~----------------~~g~~~~~gv~v~~---dl~~   96 (303)
                      |.|+||-+|+..++.+.+.|+ +++++........   +.+.+                +-......++.++.   .+.+
T Consensus         1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~l~~   80 (383)
T PRK12464          1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTDGLIA   80 (383)
T ss_pred             CCccccHHHHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHHHHH
Confidence            579999999999999887655 9999987532100   00000                00000001123322   2333


Q ss_pred             HHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057           97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (303)
Q Consensus        97 ~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT  137 (303)
                      +.+    ..++|+|+-...-.+...-...++++|+.+-...
T Consensus        81 l~~----~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLAN  117 (383)
T PRK12464         81 VAT----HPGSDLVLSSVVGAAGLLPTIEALKAKKDIALAN  117 (383)
T ss_pred             HHc----CCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEec
Confidence            333    2468998877777777777788889998877653

>PRK05442 malate dehydrogenase; Provisional

Probab=90.30  E-value=0.96  Score=43.45  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHh
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTK   57 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~   57 (303)
                      |.||+|+|++|++|..++-.+..
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~   26 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIAS   26 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHh
Confidence            57999999889999999887664

>PRK06180 short chain dehydrogenase; Provisional

Probab=90.26  E-value=1.4  Score=40.17  Aligned_cols=82  Identities=20%  Similarity=0.146  Sum_probs=51.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf  113 (303)
                      +.+|.|.|++|.+|+.+++.+.+ .+++++++ +++.  .+...+.               +...     .... +..|.
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~-~G~~V~~~-~r~~--~~~~~l~---------------~~~~-----~~~~~~~~D~   59 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALA-AGHRVVGT-VRSE--AARADFE---------------ALHP-----DRALARLLDV   59 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHh-CcCEEEEE-eCCH--HHHHHHH---------------hhcC-----CCeeEEEccC
Confidence            45799999999999999999875 58887764 4431  1111111               0000     1122 34588


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      +.++...+.+..+.+.  ++++|+=..|.
T Consensus        60 ~d~~~~~~~~~~~~~~~~~~d~vv~~ag~   88 (277)
T PRK06180         60 TDFDAIDAVVADAEATFGPIDVLVNNAGY   88 (277)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence            8888887777766553  57888776654

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=90.21  E-value=0.65  Score=43.91  Aligned_cols=32  Identities=22%  Similarity=0.391  Sum_probs=24.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      |||.|.|++|.+|+.+++.+.+. +.+.+-.++
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~-g~~~v~~~~   32 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINN-TQDSVVNVD   32 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHh-CCCeEEEec
Confidence            48999999999999999999865 333333354

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=90.17  E-value=1.2  Score=45.58  Aligned_cols=64  Identities=20%  Similarity=0.215  Sum_probs=43.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|+ |+||+.+++.+. .-++++.+ +|+... .+  . .   ...++... ++++++.      .+|+|+-..
T Consensus       140 gktvgIiG~-G~IG~~vA~~l~-~fG~~V~~-~d~~~~-~~--~-~---~~~g~~~~-~l~ell~------~aDiV~l~l  202 (526)
T PRK13581        140 GKTLGIIGL-GRIGSEVAKRAK-AFGMKVIA-YDPYIS-PE--R-A---AQLGVELV-SLDELLA------RADFITLHT  202 (526)
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-hCCCEEEE-ECCCCC-hh--H-H---HhcCCEEE-cHHHHHh------hCCEEEEcc
Confidence            368999998 999999999887 46888875 665321 11  1 1   12344444 7999984      789888655


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       203 P  203 (526)
T PRK13581        203 P  203 (526)
T ss_pred             C
Confidence            3

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=90.15  E-value=0.42  Score=45.48  Aligned_cols=90  Identities=10%  Similarity=0.048  Sum_probs=50.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-C-CCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-Q-PLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-~-~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      -+++|+|+ |..++.+++++.....++=+-+++++.  ..+.+++... . ...+...+|.++++      .++||||-+
T Consensus       129 ~~l~viGa-G~QA~~~~~a~~~~~~i~~v~v~~r~~--~~~~~~~~~~~~~~~~v~~~~~~~~av------~~aDii~ta  199 (313)
T PF02423_consen  129 RTLGVIGA-GVQARWHLRALAAVRPIKEVRVYSRSP--ERAEAFAARLRDLGVPVVAVDSAEEAV------RGADIIVTA  199 (313)
T ss_dssp             -EEEEE---SHHHHHHHHHHHHHS--SEEEEE-SSH--HHHHHHHHHHHCCCTCEEEESSHHHHH------TTSSEEEE-
T ss_pred             ceEEEECC-CHHHHHHHHHHHHhCCceEEEEEccCh--hHHHHHHHhhccccccceeccchhhhc------ccCCEEEEc
Confidence            58999997 999999999998766688888888752  2222222111 1 23455578999998      479999977


Q ss_pred             CCchhHHHHH-HHHHHcCCCeE
Q 022057          114 TDASTVYDNV-KQATAFGMRSV  134 (303)
Q Consensus       114 T~p~a~~~~~-~~al~~g~~vV  134 (303)
                      |+.....+.+ ...++.|.++.
T Consensus       200 T~s~~~~P~~~~~~l~~g~hi~  221 (313)
T PF02423_consen  200 TPSTTPAPVFDAEWLKPGTHIN  221 (313)
T ss_dssp             ---SSEEESB-GGGS-TT-EEE
T ss_pred             cCCCCCCccccHHHcCCCcEEE
Confidence            6433200111 13456777765

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=90.14  E-value=4.7  Score=41.88  Aligned_cols=122  Identities=12%  Similarity=0.086  Sum_probs=68.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCC--HHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSD--LTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~d--l~~~l~~~~~~~~~DVvI  111 (303)
                      ..+|.|+|+ |++|+.+++.+. ..+.+++ ++|.+.  +....+    .+.|.++ +.|  -.+.+++ ..-.++|++|
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~-~~g~~vv-vID~d~--~~v~~~----~~~g~~v~~GDat~~~~L~~-agi~~A~~vv  469 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLM-ANKMRIT-VLERDI--SAVNLM----RKYGYKVYYGDATQLELLRA-AGAEKAEAIV  469 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHH-hCCCCEE-EEECCH--HHHHHH----HhCCCeEEEeeCCCHHHHHh-cCCccCCEEE
Confidence            468999998 999999999877 4567766 466542  122222    1344444 222  2223321 1124688877


Q ss_pred             EcCC-chhHHHHHHHHHHcCC--CeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHH
Q 022057          112 DFTD-ASTVYDNVKQATAFGM--RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (303)
Q Consensus       112 DfT~-p~a~~~~~~~al~~g~--~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll  172 (303)
                      -.+. ++.....+..+.+...  +++.  ..-++++.++|.++    |+..++-.+|--+..+-
T Consensus       470 ~~~~d~~~n~~i~~~~r~~~p~~~Iia--Ra~~~~~~~~L~~~----Ga~~vv~e~~es~l~l~  527 (601)
T PRK03659        470 ITCNEPEDTMKIVELCQQHFPHLHILA--RARGRVEAHELLQA----GVTQFSRETFSSALELG  527 (601)
T ss_pred             EEeCCHHHHHHHHHHHHHHCCCCeEEE--EeCCHHHHHHHHhC----CCCEEEccHHHHHHHHH
Confidence            6553 4444555566666543  3433  34555665666543    45567666665555443

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=90.14  E-value=0.68  Score=45.61  Aligned_cols=25  Identities=16%  Similarity=0.337  Sum_probs=21.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR   59 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~   59 (303)
                      ++||+|+|++|++|..++-.+....
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~~   68 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASGE   68 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcc
Confidence            5999999998999999999887543

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=90.13  E-value=1.4  Score=42.08  Aligned_cols=62  Identities=16%  Similarity=0.234  Sum_probs=41.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .+|+|+|. |+||+.+++.+. .-++++.+ +|+..  +...   +. .  .+.-..++++++.      ++|+|+...
T Consensus       137 ~tvgIvG~-G~IG~~vA~~l~-afG~~V~~-~~~~~--~~~~---~~-~--~~~~~~~l~e~l~------~aDvvv~~l  198 (312)
T PRK15469        137 FTIGILGA-GVLGSKVAQSLQ-TWGFPLRC-WSRSR--KSWP---GV-Q--SFAGREELSAFLS------QTRVLINLL  198 (312)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-EeCCC--CCCC---Cc-e--eecccccHHHHHh------cCCEEEECC
Confidence            68999997 999999999887 46888875 56532  1100   00 0  0111357899984      799998654

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=90.09  E-value=1.8  Score=39.73  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=24.2

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~   66 (303)
                      ||.|.|++|.+|+.+++.+.+ .+.+++++
T Consensus         1 kvlV~GatG~iG~~l~~~l~~-~g~~V~~~   29 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLE-SGHEVVVL   29 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHh-CCCeEEEE
Confidence            689999999999999999875 46777653

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=90.07  E-value=1  Score=42.82  Aligned_cols=60  Identities=18%  Similarity=0.129  Sum_probs=42.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|||+|. |++|+.+++.+. .=++++.+ +|+..  ...        ..+++ +.+++++++      .+|+|+-..
T Consensus       145 gktvGIiG~-G~IG~~vA~~~~-~fgm~V~~-~d~~~--~~~--------~~~~~-~~~l~ell~------~sDvv~lh~  204 (311)
T PRK08410        145 GKKWGIIGL-GTIGKRVAKIAQ-AFGAKVVY-YSTSG--KNK--------NEEYE-RVSLEELLK------TSDIISIHA  204 (311)
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-hcCCEEEE-ECCCc--ccc--------ccCce-eecHHHHhh------cCCEEEEeC
Confidence            368999997 999999999876 45888875 56531  110        11222 458999994      789988654

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=90.05  E-value=3  Score=39.52  Aligned_cols=69  Identities=10%  Similarity=0.064  Sum_probs=40.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhh---hh--cCCC--CCCeeecCCHHHHHhccccCCCcc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGM---VC--DMEQ--PLEIPVMSDLTMVLGSISQSKARA  108 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~---~~--g~~~--~~gv~v~~dl~~~l~~~~~~~~~D  108 (303)
                      +||+|+|+ |.||..++..++...-.+ +-.+|.... ...+.   +.  +...  ...+..+.|++++       .++|
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~~-VvlvDi~~~-l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~-------~~aD   71 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELAD-LVLLDVVEG-IPQGKALDMYEASPVGGFDTKVTGTNNYADT-------ANSD   71 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCCe-EEEEeCCCC-hhHHHHHhhhhhhhccCCCcEEEecCCHHHh-------CCCC
Confidence            58999998 999999999887543236 556775321 11111   10  0001  1124446788774       4789


Q ss_pred             EEEEcC
Q 022057          109 VVIDFT  114 (303)
Q Consensus       109 VvIDfT  114 (303)
                      +||-+.
T Consensus        72 iVIita   77 (305)
T TIGR01763        72 IVVITA   77 (305)
T ss_pred             EEEEcC
Confidence            888654

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK06153 hypothetical protein; Provisional

Probab=90.01  E-value=1.8  Score=42.65  Aligned_cols=32  Identities=22%  Similarity=0.211  Sum_probs=25.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      .||+|+|| |+.|..++..+....=-+|+ ++|.
T Consensus       177 ~~VaIVG~-GG~GS~Va~~LAR~GVgeI~-LVD~  208 (393)
T PRK06153        177 QRIAIIGL-GGTGSYILDLVAKTPVREIH-LFDG  208 (393)
T ss_pred             CcEEEEcC-CccHHHHHHHHHHcCCCEEE-EECC
Confidence            58999999 99999999999876434444 5663

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.00  E-value=0.47  Score=42.37  Aligned_cols=87  Identities=17%  Similarity=0.174  Sum_probs=53.7

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID  112 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvID  112 (303)
                      |+..+.|.|++|.+|+.+++.+.+ .+.+++.+ ++... ......               .+.+..  ...+++ +-.|
T Consensus         1 ~~k~vlItG~sg~iG~~la~~L~~-~g~~vi~~-~r~~~-~~~~~~---------------~~~~~~--~~~~~~~~~~D   60 (256)
T PRK12745          1 MRPVALVTGGRRGIGLGIARALAA-AGFDLAIN-DRPDD-EELAAT---------------QQELRA--LGVEVIFFPAD   60 (256)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHH-CCCEEEEE-ecCch-hHHHHH---------------HHHHHh--cCCceEEEEec
Confidence            345689999999999999999885 47888764 43210 000000               011110  001233 3468


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      ++.++...+.+..+.+.  ++.+|+-..|.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~id~vi~~ag~   90 (256)
T PRK12745         61 VADLSAHEAMLDAAQAAWGRIDCLVNNAGV   90 (256)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence            99988888877776554  57888877764

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=89.97  E-value=3.9  Score=36.19  Aligned_cols=82  Identities=15%  Similarity=0.084  Sum_probs=51.7

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE---EEEc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VIDF  113 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---vIDf  113 (303)
                      .+.|.|++|.+|+.+++.+.+ .+.+++...++..  ....+.              ++++-.     ...++   ..|.
T Consensus         5 ~~lVtG~s~giG~~~a~~l~~-~G~~vv~~~~~~~--~~~~~~--------------~~~~~~-----~~~~~~~~~~D~   62 (246)
T PRK12938          5 IAYVTGGMGGIGTSICQRLHK-DGFKVVAGCGPNS--PRRVKW--------------LEDQKA-----LGFDFIASEGNV   62 (246)
T ss_pred             EEEEECCCChHHHHHHHHHHH-cCCEEEEEcCCCh--HHHHHH--------------HHHHHh-----cCCcEEEEEcCC
Confidence            579999999999999999985 5788776554321  000000              111111     12233   3678


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      +.++...+.+..+.+.  ++++|+=+.|.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~id~li~~ag~   91 (246)
T PRK12938         63 GDWDSTKAAFDKVKAEVGEIDVLVNNAGI   91 (246)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            8888877777666554  67888887775

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.96  E-value=7.1  Score=38.59  Aligned_cols=31  Identities=29%  Similarity=0.292  Sum_probs=24.6

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      ||.|+|+ |+.|...++.+. ..+.++. +.|..
T Consensus         2 ~v~viG~-G~sG~s~a~~l~-~~G~~V~-~~D~~   32 (459)
T PRK02705          2 IAHVIGL-GRSGIAAARLLK-AQGWEVV-VSDRN   32 (459)
T ss_pred             eEEEEcc-CHHHHHHHHHHH-HCCCEEE-EECCC
Confidence            7999998 999999888666 5688765 47753

>PRK08267 short chain dehydrogenase; Provisional

Probab=89.91  E-value=1.6  Score=39.29  Aligned_cols=83  Identities=20%  Similarity=0.263  Sum_probs=52.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf  113 (303)
                      |.++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++.               +.+..    ...+ +.+|+
T Consensus         1 mk~vlItGasg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~~---------------~~~~~----~~~~~~~~D~   57 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAA-EGWRVGA-YDINE--AGLAALA---------------AELGA----GNAWTGALDV   57 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHH-CCCeEEE-EeCCH--HHHHHHH---------------HHhcC----CceEEEEecC
Confidence            35699999999999999998885 5777665 44431  1111111               11100    1232 35788


Q ss_pred             CCchhHHHHHHHHHHc---CCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAF---GMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~---g~~vVigTTG~  140 (303)
                      +.++.+.+.+..+.+.   ++++|+-..|.
T Consensus        58 ~~~~~v~~~~~~~~~~~~~~id~vi~~ag~   87 (260)
T PRK08267         58 TDRAAWDAALADFAAATGGRLDVLFNNAGI   87 (260)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCEEEECCCC
Confidence            9888888877766553   67888877664

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=89.90  E-value=0.69  Score=44.01  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=24.9

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ||+|+|+ |.+|..++-.+...+-+.=+..+|.
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di   32 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDV   32 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            7999998 9999999998876554443446775

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=89.85  E-value=0.94  Score=43.82  Aligned_cols=129  Identities=14%  Similarity=0.185  Sum_probs=76.0

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCC-c----EEEEEEec--CCCC--cch-----------hhhhcCCCCCCeeecC
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARG-M----EVAGAIDS--HSVG--EDI-----------GMVCDMEQPLEIPVMS   92 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~-~----eLvg~vd~--~~~g--~d~-----------~~~~g~~~~~gv~v~~   92 (303)
                      .+++||+|+|. |+=|+.+++.+.++-. +    .-|..+..  ...|  +.+           ..+-|..-+..+...+
T Consensus        19 ~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~   97 (372)
T KOG2711|consen   19 RDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP   97 (372)
T ss_pred             cCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence            44799999996 9999999998875321 1    12222221  1112  111           2222332344577788


Q ss_pred             CHHHHHhccccCCCccEEEEcCCchhH----HHHHHHHHHcCCCeEEeCCCCCHH-------HHHHHHHHhhhcCCeEEE
Q 022057           93 DLTMVLGSISQSKARAVVIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLE-------TVSALSAFCDKASMGCLI  161 (303)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDfT~p~a~----~~~~~~al~~g~~vVigTTG~~~e-------~~~~L~~~a~~~~i~vv~  161 (303)
                      |+.++.      .++|++| |..|...    .+-+.-.++-+.+.|+-+-|+...       -..++..-+-.-.+.++.
T Consensus        98 dl~ea~------~dADilv-f~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~  170 (372)
T KOG2711|consen   98 DLVEAA------KDADILV-FVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLM  170 (372)
T ss_pred             hHHHHh------ccCCEEE-EeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeec
Confidence            999987      4899998 5555433    445566677888888777787532       122333333333355677


Q ss_pred             cCCCcHHH
Q 022057          162 APTLSIGS  169 (303)
Q Consensus       162 a~N~SiGv  169 (303)
                      .||++--+
T Consensus       171 GaNiA~EV  178 (372)
T KOG2711|consen  171 GANIASEV  178 (372)
T ss_pred             CCchHHHH
Confidence            77776655

>PRK07454 short chain dehydrogenase; Provisional

Probab=89.81  E-value=5.1  Score=35.36  Aligned_cols=85  Identities=18%  Similarity=0.266  Sum_probs=53.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf  113 (303)
                      |.++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  .+..++               .+.+..  ...+++ +..|.
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~~~~--~~~~~~~~~~D~   64 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAK-AGWDLAL-VARSQ--DALEAL---------------AAELRS--TGVKAAAYSIDL   64 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHH---------------HHHHHh--CCCcEEEEEccC
Confidence            56899999999999999999875 5777655 45431  111111               111110  001233 35688


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      +.++.....+..+.+.  ++++|+-..|.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~id~lv~~ag~   93 (241)
T PRK07454         65 SNPEAIAPGIAELLEQFGCPDVLINNAGM   93 (241)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            8888887777766553  58888877764

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=89.78  E-value=2.3  Score=44.03  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=26.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      -.|.|.|++|++|+.+++.+.+ .++++++...
T Consensus        81 KvVLVTGATGgIG~aLAr~LLk-~G~~Vval~R  112 (576)
T PLN03209         81 DLAFVAGATGKVGSRTVRELLK-LGFRVRAGVR  112 (576)
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCeEEEEeC
Confidence            4699999999999999999875 5888887543

>PRK08017 oxidoreductase; Provisional

Probab=89.74  E-value=5.3  Score=35.51  Aligned_cols=31  Identities=32%  Similarity=0.535  Sum_probs=25.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~   66 (303)
                      +.+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus         2 ~k~vlVtGasg~IG~~la~~l~~-~g~~v~~~   32 (256)
T PRK08017          2 QKSVLITGCSSGIGLEAALELKR-RGYRVLAA   32 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEEE
Confidence            34799999999999999999875 47787654

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=89.68  E-value=1.2  Score=41.23  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=27.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus         5 ~~ilVtGatGfIG~~l~~~L~~-~g~~V~~~~r   36 (322)
T PLN02662          5 KVVCVTGASGYIASWLVKLLLQ-RGYTVKATVR   36 (322)
T ss_pred             CEEEEECChHHHHHHHHHHHHH-CCCEEEEEEc
Confidence            5899999999999999999885 5788877653

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=89.67  E-value=4.4  Score=36.65  Aligned_cols=130  Identities=12%  Similarity=0.181  Sum_probs=73.7

Q ss_pred             ccccceEEEeecCCCCCceeE---------EEEcCCcHHH-----HHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC
Q 022057           18 NVKAKRFISCSTNPPQSNIKV---------IINGAVKEIG-----RAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME   83 (303)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~ikV---------~V~G~~GrMG-----~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~   83 (303)
                      -+|-+.|++|-.-|...|-+-         ++-|  |..|     -.=++++.+.-++-+.|++-++..           
T Consensus        12 ~~~gglIVSCQal~~~pl~~~~iv~~mA~Aa~~g--GAvgiR~~gv~dIkai~~~v~vPIIGIiKrd~~-----------   78 (229)
T COG3010          12 QLKGGLIVSCQALPGEPLDSPEIVAAMALAAEQG--GAVGIRIEGVEDIKAIRAVVDVPIIGIIKRDYP-----------   78 (229)
T ss_pred             HhcCCeEEEeecCCCCCCcchhHHHHHHHHHHhC--CcceEeecchhhHHHHHhhCCCCeEEEEecCCC-----------
Confidence            356789999986555433221         2221  2222     223445666677888888865431           


Q ss_pred             CCCCeeec---CCHHHHHhccccCCCccE-EEEcC---Cch-h--------------------HHHHHHHHHHcCCCeEE
Q 022057           84 QPLEIPVM---SDLTMVLGSISQSKARAV-VIDFT---DAS-T--------------------VYDNVKQATAFGMRSVV  135 (303)
Q Consensus        84 ~~~gv~v~---~dl~~~l~~~~~~~~~DV-vIDfT---~p~-a--------------------~~~~~~~al~~g~~vVi  135 (303)
                       ...+.++   .+.+++.+     ..+|| .+|.|   .|+ .                    ..+-...|.+.|..+| 
T Consensus        79 -~s~v~ITptlkeVd~L~~-----~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~I-  151 (229)
T COG3010          79 -DSPVRITPTLKEVDALAE-----AGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDII-  151 (229)
T ss_pred             -CCCceecccHHHHHHHHH-----CCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEE-
Confidence             2223333   34555554     46664 56766   344 1                    2334566788899966 


Q ss_pred             eCC--CCCH-------HHHHHHHHHhhhcCCeEEEcCCCcHH
Q 022057          136 YVP--HIQL-------ETVSALSAFCDKASMGCLIAPTLSIG  168 (303)
Q Consensus       136 gTT--G~~~-------e~~~~L~~~a~~~~i~vv~a~N~SiG  168 (303)
                      |||  |++.       .+++.++++++ .+.+++-=.+|.--
T Consensus       152 GTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP  192 (229)
T COG3010         152 GTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTP  192 (229)
T ss_pred             ecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCH
Confidence            888  7654       35666777766 66777765665543

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=89.61  E-value=0.82  Score=43.33  Aligned_cols=88  Identities=7%  Similarity=0.044  Sum_probs=58.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCC--eeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      -+++|+|+ |..|+.+++++..-..++=+-+++++.  ..+..++.. ...++  +.+.+|.++++      .++|||+-
T Consensus       118 ~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~--~~a~~f~~~~~~~~~~~v~~~~~~~eav------~~aDIV~t  188 (301)
T PRK06407        118 ENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNF--DHARAFAERFSKEFGVDIRPVDNAEAAL------RDADTITS  188 (301)
T ss_pred             cEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHHhcCCcEEEeCCHHHHH------hcCCEEEE
Confidence            68999997 999999999999888888888888653  222222210 01223  55578999998      48999996


Q ss_pred             cCCchhHHHHH-HHHHHcCCCeE
Q 022057          113 FTDASTVYDNV-KQATAFGMRSV  134 (303)
Q Consensus       113 fT~p~a~~~~~-~~al~~g~~vV  134 (303)
                      .|+...  +.+ ...++.|.++.
T Consensus       189 aT~s~~--P~~~~~~l~pg~hV~  209 (301)
T PRK06407        189 ITNSDT--PIFNRKYLGDEYHVN  209 (301)
T ss_pred             ecCCCC--cEecHHHcCCCceEE
Confidence            663211  222 23456787766

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=89.53  E-value=4.6  Score=31.73  Aligned_cols=110  Identities=20%  Similarity=0.200  Sum_probs=54.0

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-c---CCHHHHHhccccCCCccEEEEc
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |.|+|+ |++|+.+++.+.+ .+.+++. +|.+.  .....+.    +.++++ +   .+.+.+.+.  .-.++|.+|-.
T Consensus         1 vvI~G~-g~~~~~i~~~L~~-~~~~vvv-id~d~--~~~~~~~----~~~~~~i~gd~~~~~~l~~a--~i~~a~~vv~~   69 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKE-GGIDVVV-IDRDP--ERVEELR----EEGVEVIYGDATDPEVLERA--GIEKADAVVIL   69 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHH-TTSEEEE-EESSH--HHHHHHH----HTTSEEEES-TTSHHHHHHT--TGGCESEEEEE
T ss_pred             eEEEcC-CHHHHHHHHHHHh-CCCEEEE-EECCc--HHHHHHH----hcccccccccchhhhHHhhc--CccccCEEEEc
Confidence            679998 9999999999987 5556664 55431  1112221    122322 2   222222211  11467877766


Q ss_pred             CCchhH-HHHHHHHHH-cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057          114 TDASTV-YDNVKQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus       114 T~p~a~-~~~~~~al~-~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                      |.-+.. ...+..+.+ ++..-++. .-.+++..+.+    ++.|+-.++.|
T Consensus        70 ~~~d~~n~~~~~~~r~~~~~~~ii~-~~~~~~~~~~l----~~~g~d~vi~P  116 (116)
T PF02254_consen   70 TDDDEENLLIALLARELNPDIRIIA-RVNDPENAELL----RQAGADHVISP  116 (116)
T ss_dssp             SSSHHHHHHHHHHHHHHTTTSEEEE-EESSHHHHHHH----HHTT-SEEEEH
T ss_pred             cCCHHHHHHHHHHHHHHCCCCeEEE-EECCHHHHHHH----HHCCcCEEECc
Confidence            644433 444455554 33223332 23444443344    33455556554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PLN02928 oxidoreductase family protein

Probab=89.53  E-value=0.95  Score=43.78  Aligned_cols=67  Identities=15%  Similarity=0.086  Sum_probs=42.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh--------hcCCCCCCeeecCCHHHHHhccccCCCc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV--------CDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~--------~g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (303)
                      .+|+|+|+ |+||+.+++.+. .=|+++++ +|+... .+....        .......+  -+.++++++.      .+
T Consensus       160 ktvGIiG~-G~IG~~vA~~l~-afG~~V~~-~dr~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~L~ell~------~a  227 (347)
T PLN02928        160 KTVFILGY-GAIGIELAKRLR-PFGVKLLA-TRRSWT-SEPEDGLLIPNGDVDDLVDEKG--GHEDIYEFAG------EA  227 (347)
T ss_pred             CEEEEECC-CHHHHHHHHHHh-hCCCEEEE-ECCCCC-hhhhhhhccccccccccccccC--cccCHHHHHh------hC
Confidence            68999997 999999999877 46888876 565310 100000        00000011  3568999984      79


Q ss_pred             cEEEEcC
Q 022057          108 AVVIDFT  114 (303)
Q Consensus       108 DVvIDfT  114 (303)
                      |+|+-..
T Consensus       228 DiVvl~l  234 (347)
T PLN02928        228 DIVVLCC  234 (347)
T ss_pred             CEEEECC
Confidence            9998654

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=89.47  E-value=1.1  Score=42.74  Aligned_cols=84  Identities=24%  Similarity=0.398  Sum_probs=51.8

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcCCc
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTDA  116 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT~p  116 (303)
                      .+|.|+|.++|+..++.+++ .|+.++ .+.++.  ..+..++           .++++--.     .+.. +++|||.+
T Consensus        52 AVVTGaTDGIGKayA~eLAk-rG~nvv-LIsRt~--~KL~~v~-----------kEI~~~~~-----vev~~i~~Dft~~  111 (312)
T KOG1014|consen   52 AVVTGATDGIGKAYARELAK-RGFNVV-LISRTQ--EKLEAVA-----------KEIEEKYK-----VEVRIIAIDFTKG  111 (312)
T ss_pred             EEEECCCCcchHHHHHHHHH-cCCEEE-EEeCCH--HHHHHHH-----------HHHHHHhC-----cEEEEEEEecCCC
Confidence            56789999999999999985 899955 455542  1111111           11111110     1122 58899999


Q ss_pred             hhHHHHHHHHHH-cCCCeEEeCCCCC
Q 022057          117 STVYDNVKQATA-FGMRSVVYVPHIQ  141 (303)
Q Consensus       117 ~a~~~~~~~al~-~g~~vVigTTG~~  141 (303)
                      +..++.++..+. -.+-++|=.-|.+
T Consensus       112 ~~~ye~i~~~l~~~~VgILVNNvG~~  137 (312)
T KOG1014|consen  112 DEVYEKLLEKLAGLDVGILVNNVGMS  137 (312)
T ss_pred             chhHHHHHHHhcCCceEEEEeccccc
Confidence            988777765544 4467777666643

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=89.37  E-value=3.6  Score=38.40  Aligned_cols=124  Identities=13%  Similarity=0.035  Sum_probs=67.0

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCCc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p  116 (303)
                      +|.|+|+ |.+|...++.+. ..+.+.+.++|...  .. -+.++   ...  +.+ .++...     ..+|++||++-.
T Consensus       147 ~vlV~G~-G~vG~~a~q~ak-~~G~~~v~~~~~~~--~r-l~~a~---~~~--~i~-~~~~~~-----~g~Dvvid~~G~  210 (308)
T TIGR01202       147 PDLIVGH-GTLGRLLARLTK-AAGGSPPAVWETNP--RR-RDGAT---GYE--VLD-PEKDPR-----RDYRAIYDASGD  210 (308)
T ss_pred             cEEEECC-CHHHHHHHHHHH-HcCCceEEEeCCCH--HH-HHhhh---hcc--ccC-hhhccC-----CCCCEEEECCCC
Confidence            6899997 999999998665 45787666666432  11 11111   111  111 111111     468999999965


Q ss_pred             h-hHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhcc
Q 022057          117 S-TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF  181 (303)
Q Consensus       117 ~-a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~  181 (303)
                      . .....++.....|+=+++|.++-.. ++....-+.+  ++.+..+.+++  -..+.++.+.+..
T Consensus       211 ~~~~~~~~~~l~~~G~iv~~G~~~~~~-~~~~~~~~~~--~~~i~~~~~~~--~~~~~~~~~l~~~  271 (308)
T TIGR01202       211 PSLIDTLVRRLAKGGEIVLAGFYTEPV-NFDFVPAFMK--EARLRIAAEWQ--PGDLHAVRELIES  271 (308)
T ss_pred             HHHHHHHHHhhhcCcEEEEEeecCCCc-ccccchhhhc--ceEEEEecccc--hhHHHHHHHHHHc
Confidence            4 4455566666777777788653211 1111111222  25555444433  2346666666654

>PRK06953 short chain dehydrogenase; Provisional

Probab=89.28  E-value=2.1  Score=37.60  Aligned_cols=79  Identities=20%  Similarity=0.286  Sum_probs=50.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf  113 (303)
                      |.++.|.|++|.+|+.+++.+.+ .+.+++.+ +++.  .+..                  ++..     .... +..|+
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~-~G~~v~~~-~r~~--~~~~------------------~~~~-----~~~~~~~~D~   53 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRA-DGWRVIAT-ARDA--AALA------------------ALQA-----LGAEALALDV   53 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHh-CCCEEEEE-ECCH--HHHH------------------HHHh-----ccceEEEecC
Confidence            35789999999999999999874 58887764 4431  1111                  1110     1111 45678


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTTG~  140 (303)
                      +.++.....+......++++|+-+.|.
T Consensus        54 ~~~~~v~~~~~~~~~~~~d~vi~~ag~   80 (222)
T PRK06953         54 ADPASVAGLAWKLDGEALDAAVYVAGV   80 (222)
T ss_pred             CCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence            888777665544433467888877664

>PLN02306 hydroxypyruvate reductase

Probab=89.27  E-value=1.2  Score=43.72  Aligned_cols=70  Identities=20%  Similarity=0.163  Sum_probs=42.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhh---hhc--CC----CCCCeeecCCHHHHHhccccCCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGM---VCD--ME----QPLEIPVMSDLTMVLGSISQSKA  106 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~---~~g--~~----~~~gv~v~~dl~~~l~~~~~~~~  106 (303)
                      .+|+|+|. |++|+.+++.+...=++++.+ +|+... .+...   ..+  +.    ...++..+.++++++.      .
T Consensus       166 ktvGIiG~-G~IG~~vA~~l~~~fGm~V~~-~d~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~------~  236 (386)
T PLN02306        166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQS-TRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR------E  236 (386)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCEEEE-ECCCCc-hhhhhhhhhhcccccccccccccccccCCHHHHHh------h
Confidence            68999997 999999999875345888774 665321 00000   000  00    0011222468999994      7


Q ss_pred             ccEEEEcC
Q 022057          107 RAVVIDFT  114 (303)
Q Consensus       107 ~DVvIDfT  114 (303)
                      +|+|+-..
T Consensus       237 sDiV~lh~  244 (386)
T PLN02306        237 ADVISLHP  244 (386)
T ss_pred             CCEEEEeC
Confidence            99988654

>PLN00198 anthocyanidin reductase; Provisional

Probab=89.25  E-value=1.4  Score=41.43  Aligned_cols=36  Identities=11%  Similarity=0.230  Sum_probs=29.1

Q ss_pred             CCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        30 ~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      .|.+ +.+|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         5 ~~~~-~~~vlItG~~GfIG~~l~~~L~~-~g~~V~~~~   40 (338)
T PLN00198          5 TPTG-KKTACVIGGTGFLASLLIKLLLQ-KGYAVNTTV   40 (338)
T ss_pred             cCCC-CCeEEEECCchHHHHHHHHHHHH-CCCEEEEEE
Confidence            3555 57899999999999999999886 477887654

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=89.19  E-value=1.4  Score=42.21  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=24.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (303)
                      +||+|+|+ |++|+.++-.+..+.-. ||+ .+|.+
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~-LiDi~   34 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELV-LIDIN   34 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEE-EEEcc
Confidence            58999999 99999999988544433 554 57753

>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]

Probab=89.13  E-value=1.2  Score=41.32  Aligned_cols=43  Identities=21%  Similarity=0.260  Sum_probs=37.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG   77 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~   77 (303)
                      ++||+++|+.|-.|+.+++.+..+|-+|+.-+..++..|+...
T Consensus        19 ~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~   61 (340)
T KOG4354|consen   19 DIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLE   61 (340)
T ss_pred             CceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCccc
Confidence            5999999999999999999999999999998776666565554

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=89.12  E-value=3.1  Score=44.07  Aligned_cols=35  Identities=20%  Similarity=0.167  Sum_probs=28.2

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      +...||+|+|+ |.||+.|+..++...+++++- +|.
T Consensus       307 ~~i~~v~ViGa-G~mG~giA~~~a~~~G~~V~l-~d~  341 (708)
T PRK11154        307 RPVNKVGVLGG-GLMGGGIAYVTATKAGLPVRI-KDI  341 (708)
T ss_pred             CcccEEEEECC-chhhHHHHHHHHHHcCCeEEE-EeC
Confidence            43468999998 999999999877677888775 664

>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B

Probab=89.12  E-value=4.9  Score=33.44  Aligned_cols=34  Identities=32%  Similarity=0.456  Sum_probs=23.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~   70 (303)
                      -+..++|. |..|+.+++.+.+.+  +++++|.+|.+
T Consensus        78 ~~~~~v~~-~~~~~~~~~~l~~~~~~g~~vvg~~d~~  113 (175)
T PF13727_consen   78 RNVLIVGA-GGAGRELAEALRSNPRLGYRVVGFVDDD  113 (175)
T ss_dssp             EEEEEE---SHHHHHHHHHHHH--SSSEEEEEEE-S-
T ss_pred             cceEEEEE-echHHHHHHHHHhhhhcCceEEEEEeCc
Confidence            44467775 888999999997754  68999999865

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=89.09  E-value=3.3  Score=38.62  Aligned_cols=32  Identities=25%  Similarity=0.378  Sum_probs=25.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      -+|.|.|++|.+|+..++.+. ..+.++++...
T Consensus       140 ~~VLI~ga~g~vG~~aiqlAk-~~G~~Vi~~~~  171 (325)
T TIGR02825       140 ETVMVNAAAGAVGSVVGQIAK-LKGCKVVGAAG  171 (325)
T ss_pred             CEEEEeCCccHHHHHHHHHHH-HcCCEEEEEeC
Confidence            369999988999999998655 56888776554

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=89.06  E-value=3.8  Score=39.40  Aligned_cols=146  Identities=15%  Similarity=0.058  Sum_probs=74.2

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC-CCeee--cC---CHHHHHhccccCCCccEE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPV--MS---DLTMVLGSISQSKARAVV  110 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~-~gv~v--~~---dl~~~l~~~~~~~~~DVv  110 (303)
                      +|+|+|+ |-||...+..+.. -+..-+-++|...  .. -+++   ++ .+..+  ..   +..+.+.+......+|++
T Consensus       171 ~V~V~Ga-GpIGLla~~~a~~-~Ga~~Viv~d~~~--~R-l~~A---~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~v  242 (350)
T COG1063         171 TVVVVGA-GPIGLLAIALAKL-LGASVVIVVDRSP--ER-LELA---KEAGGADVVVNPSEDDAGAEILELTGGRGADVV  242 (350)
T ss_pred             EEEEECC-CHHHHHHHHHHHH-cCCceEEEeCCCH--HH-HHHH---HHhCCCeEeecCccccHHHHHHHHhCCCCCCEE
Confidence            7999998 9999998776654 4444444557532  11 1122   11 22221  11   111111110011258999


Q ss_pred             EEcC-CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCC-CcHHHHHHHHHHHHhccCCCcEE-
Q 022057          111 IDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT-LSIGSILLQQAAISASFHYKNVE-  187 (303)
Q Consensus       111 IDfT-~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N-~SiGv~ll~~~a~~~~~~~~die-  187 (303)
                      ||+| ++.+....+..+...|.=+++|+++-..... ....+..+ ++.+.=+-+ ++-  .-+.++.+.++.-..|.+ 
T Consensus       243 ie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~-~~~~~~~k-el~l~gs~~~~~~--~~~~~~~~ll~~g~i~~~~  318 (350)
T COG1063         243 IEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPL-PAGLVVSK-ELTLRGSLRPSGR--EDFERALDLLASGKIDPEK  318 (350)
T ss_pred             EECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCcc-CHHHHHhc-ccEEEeccCCCCc--ccHHHHHHHHHcCCCChhH
Confidence            9999 5555666667777777888889886542111 12222222 244433211 222  235555555554344544 


Q ss_pred             EEEccCCC
Q 022057          188 IVESRPNA  195 (303)
Q Consensus       188 IiE~Hh~K  195 (303)
                      ++ .|.-+
T Consensus       319 li-t~~~~  325 (350)
T COG1063         319 LI-THRLP  325 (350)
T ss_pred             ce-Eeecc
Confidence            34 55544

>PRK07904 short chain dehydrogenase; Provisional

Probab=89.02  E-value=3.9  Score=37.00  Aligned_cols=88  Identities=14%  Similarity=0.057  Sum_probs=52.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDf  113 (303)
                      ..+|.|.|++|++|+.+++.+.+..+..++.. +++.. ....++.              +++...  ...++ -+-.|.
T Consensus         8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~-~r~~~-~~~~~~~--------------~~l~~~--~~~~v~~~~~D~   69 (253)
T PRK07904          8 PQTILLLGGTSEIGLAICERYLKNAPARVVLA-ALPDD-PRRDAAV--------------AQMKAA--GASSVEVIDFDA   69 (253)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEE-eCCcc-hhHHHHH--------------HHHHhc--CCCceEEEEecC
Confidence            35799999999999999999887656787754 44320 1111111              111110  00012 134578


Q ss_pred             CCchhHHHHHHHHHHc-CCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAF-GMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~-g~~vVigTTG~  140 (303)
                      +.++...+.++.+.+. ++++++-..|.
T Consensus        70 ~~~~~~~~~~~~~~~~g~id~li~~ag~   97 (253)
T PRK07904         70 LDTDSHPKVIDAAFAGGDVDVAIVAFGL   97 (253)
T ss_pred             CChHHHHHHHHHHHhcCCCCEEEEeeec
Confidence            8888877777766653 57877655554

>TIGR00518 alaDH alanine dehydrogenase

Probab=88.96  E-value=1.5  Score=42.71  Aligned_cols=33  Identities=21%  Similarity=0.207  Sum_probs=26.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      .-||.|+|+ |++|+..++.+.. -+++ |-++|++
T Consensus       167 ~~~VlViGa-G~vG~~aa~~a~~-lGa~-V~v~d~~  199 (370)
T TIGR00518       167 PGDVTIIGG-GVVGTNAAKMANG-LGAT-VTILDIN  199 (370)
T ss_pred             CceEEEEcC-CHHHHHHHHHHHH-CCCe-EEEEECC
Confidence            467999998 9999999998774 4677 4457764

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07825 short chain dehydrogenase; Provisional

Probab=88.90  E-value=3.7  Score=37.15  Aligned_cols=80  Identities=21%  Similarity=0.128  Sum_probs=51.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+..++. ++++.  ....++               .+.+      ..+. +..|++
T Consensus         6 ~~ilVtGasggiG~~la~~l~~-~G~~v~~-~~r~~--~~~~~~---------------~~~~------~~~~~~~~D~~   60 (273)
T PRK07825          6 KVVAITGGARGIGLATARALAA-LGARVAI-GDLDE--ALAKET---------------AAEL------GLVVGGPLDVT   60 (273)
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH---------------HHHh------ccceEEEccCC
Confidence            5799999999999999998885 5777654 34321  111110               0111      1122 346899


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++...+.+..+.+.  ++++++-..|.
T Consensus        61 ~~~~~~~~~~~~~~~~~~id~li~~ag~   88 (273)
T PRK07825         61 DPASFAAFLDAVEADLGPIDVLVNNAGV   88 (273)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            999888777766653  67888877653

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=88.87  E-value=2.5  Score=44.06  Aligned_cols=118  Identities=15%  Similarity=0.163  Sum_probs=65.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-c---CCHHHHHhccccCCCccEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVv  110 (303)
                      .-+|.|+|+ |++|+.+++.+.+ .+.+++. +|.+.  +....+.    +.|.++ +   ++.+ ++.+ ..-.++|++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~-~g~~vvv-ID~d~--~~v~~~~----~~g~~v~~GDat~~~-~L~~-agi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLS-SGVKMTV-LDHDP--DHIETLR----KFGMKVFYGDATRMD-LLES-AGAAKAEVL  468 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHh-CCCCEEE-EECCH--HHHHHHH----hcCCeEEEEeCCCHH-HHHh-cCCCcCCEE
Confidence            358999998 9999999998774 5666664 57542  1122221    234444 2   2333 3321 012468887


Q ss_pred             EEcC-CchhHHHHHHHHHHcCC--CeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          111 IDFT-DASTVYDNVKQATAFGM--RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       111 IDfT-~p~a~~~~~~~al~~g~--~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      |-.+ .++.....+..+.++..  +++.  -..++++..+|+++    |+-.++-..+.-+.
T Consensus       469 vv~~~d~~~n~~i~~~ar~~~p~~~iia--Ra~d~~~~~~L~~~----Gad~v~~e~~e~sl  524 (621)
T PRK03562        469 INAIDDPQTSLQLVELVKEHFPHLQIIA--RARDVDHYIRLRQA----GVEKPERETFEGAL  524 (621)
T ss_pred             EEEeCCHHHHHHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHC----CCCEEehhhHhHHH
Confidence            7665 44555666666666643  4443  23445555666554    34445444444333

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=88.84  E-value=2.5  Score=39.95  Aligned_cols=30  Identities=27%  Similarity=0.361  Sum_probs=26.1

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      +|.|.|++|-+|+.+++.+.+ .+.++++..
T Consensus         2 ~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~   31 (343)
T TIGR01472         2 IALITGITGQDGSYLAEFLLE-KGYEVHGLI   31 (343)
T ss_pred             eEEEEcCCCcHHHHHHHHHHH-CCCEEEEEe
Confidence            799999999999999999885 588888754

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=88.81  E-value=1.1  Score=44.29  Aligned_cols=61  Identities=20%  Similarity=0.108  Sum_probs=42.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|||+|. |++|+.+++.+. .=|+++++ +|+..  ..        ...++....++++++.      .+|+|+-..
T Consensus       151 gktvGIiG~-G~IG~~vA~~~~-~fGm~V~~-~d~~~--~~--------~~~~~~~~~~l~ell~------~sDiVslh~  211 (409)
T PRK11790        151 GKTLGIVGY-GHIGTQLSVLAE-SLGMRVYF-YDIED--KL--------PLGNARQVGSLEELLA------QSDVVSLHV  211 (409)
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HCCCEEEE-ECCCc--cc--------ccCCceecCCHHHHHh------hCCEEEEcC
Confidence            368999997 999999999877 45898876 56531  00        0112333458999994      789888654

>PRK06179 short chain dehydrogenase; Provisional

Probab=88.65  E-value=7.1  Score=35.15  Aligned_cols=76  Identities=21%  Similarity=0.312  Sum_probs=49.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.. +++.  ....                  . .      .+.. +..|.+
T Consensus         5 ~~vlVtGasg~iG~~~a~~l~~-~g~~V~~~-~r~~--~~~~------------------~-~------~~~~~~~~D~~   55 (270)
T PRK06179          5 KVALVTGASSGIGRATAEKLAR-AGYRVFGT-SRNP--ARAA------------------P-I------PGVELLELDVT   55 (270)
T ss_pred             CEEEEecCCCHHHHHHHHHHHH-CCCEEEEE-eCCh--hhcc------------------c-c------CCCeeEEeecC
Confidence            4699999999999999999885 58887654 3321  0000                  0 0      1121 345788


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++...+.+..+.+.  .+++|+-..|.
T Consensus        56 d~~~~~~~~~~~~~~~g~~d~li~~ag~   83 (270)
T PRK06179         56 DDASVQAAVDEVIARAGRIDVLVNNAGV   83 (270)
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence            888777776665442  46788777664

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=88.54  E-value=3.2  Score=35.52  Aligned_cols=82  Identities=17%  Similarity=0.071  Sum_probs=47.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .||.|+|+ |++|...++.+.+ .+.+++ +++++. .++..++.      .+.. ...+++.-     ..++|+||-.|
T Consensus        14 ~~vlVvGG-G~va~rka~~Ll~-~ga~V~-VIsp~~-~~~l~~l~------~i~~~~~~~~~~d-----l~~a~lViaaT   78 (157)
T PRK06719         14 KVVVIIGG-GKIAYRKASGLKD-TGAFVT-VVSPEI-CKEMKELP------YITWKQKTFSNDD-----IKDAHLIYAAT   78 (157)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCEEE-EEcCcc-CHHHHhcc------CcEEEecccChhc-----CCCceEEEECC
Confidence            58999998 9999999998874 566666 345432 22222211      1111 12222221     14689888888


Q ss_pred             CchhHHHHHHHHHHcCCC
Q 022057          115 DASTVYDNVKQATAFGMR  132 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~  132 (303)
                      .-+.....+..+++.+.+
T Consensus        79 ~d~e~N~~i~~~a~~~~~   96 (157)
T PRK06719         79 NQHAVNMMVKQAAHDFQW   96 (157)
T ss_pred             CCHHHHHHHHHHHHHCCc
Confidence            766666655555555543

>PLN02650 dihydroflavonol-4-reductase

Probab=88.52  E-value=1.6  Score=41.30  Aligned_cols=32  Identities=28%  Similarity=0.394  Sum_probs=27.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      ..+|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~-~G~~V~~~~   36 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLE-RGYTVRATV   36 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHH-CCCEEEEEE
Confidence            35899999999999999999885 578888754

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.45  E-value=0.97  Score=45.13  Aligned_cols=31  Identities=29%  Similarity=0.424  Sum_probs=24.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      .||.|+|+ |..|...++.+. ..+.+++ ++|.
T Consensus        17 ~~v~viG~-G~~G~~~A~~L~-~~G~~V~-~~d~   47 (480)
T PRK01438         17 LRVVVAGL-GVSGFAAADALL-ELGARVT-VVDD   47 (480)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEeC
Confidence            58999998 999999998776 5678865 4664

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=88.43  E-value=1.4  Score=41.73  Aligned_cols=31  Identities=23%  Similarity=0.363  Sum_probs=25.7

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ||.|+|+ |..|..+++.+.. .|+.=+-++|.
T Consensus         1 kVlVVGa-GGlG~eilknLal-~Gvg~I~IvD~   31 (291)
T cd01488           1 KILVIGA-GGLGCELLKNLAL-SGFRNIHVIDM   31 (291)
T ss_pred             CEEEECC-CHHHHHHHHHHHH-cCCCeEEEECC
Confidence            6899998 9999999999874 67766667773

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=88.41  E-value=1.8  Score=40.38  Aligned_cols=33  Identities=24%  Similarity=0.231  Sum_probs=28.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.++++.++.
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r~   38 (322)
T PLN02986          6 KLVCVTGASGYIASWIVKLLLL-RGYTVKATVRD   38 (322)
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEECC
Confidence            5899999999999999998885 57888877654

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=88.40  E-value=2.2  Score=39.84  Aligned_cols=32  Identities=22%  Similarity=0.230  Sum_probs=26.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      ..+|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~-~G~~V~~~~   36 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLF-RGYTINATV   36 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHH-CCCEEEEEE
Confidence            46899999999999999998885 578877643

>PRK12743 oxidoreductase; Provisional

Probab=88.39  E-value=4.4  Score=36.38  Aligned_cols=87  Identities=13%  Similarity=0.166  Sum_probs=53.7

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE-EEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV-VID  112 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV-vID  112 (303)
                      |+-+|.|.|++|.+|+.+++.+.+ .+.+++....++.  .....+.              +++-..   ...++. -+|
T Consensus         1 ~~k~vlItGas~giG~~~a~~l~~-~G~~V~~~~~~~~--~~~~~~~--------------~~~~~~---~~~~~~~~~D   60 (256)
T PRK12743          1 MAQVAIVTASDSGIGKACALLLAQ-QGFDIGITWHSDE--EGAKETA--------------EEVRSH---GVRAEIRQLD   60 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCCh--HHHHHHH--------------HHHHhc---CCceEEEEcc
Confidence            345799999999999999999885 5888876554331  1111110              111100   012332 468


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      ++.++.....+..+.+.  .+++|+-..|.
T Consensus        61 l~~~~~~~~~~~~~~~~~~~id~li~~ag~   90 (256)
T PRK12743         61 LSDLPEGAQALDKLIQRLGRIDVLVNNAGA   90 (256)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            89988887777666543  46788877764

>TIGR00877 purD phosphoribosylamine--glycine ligase

Probab=88.34  E-value=1.9  Score=42.25  Aligned_cols=91  Identities=12%  Similarity=0.184  Sum_probs=48.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      |||+|+|. |.-++.+++++.+. +..+..++++...|.  ....   ...-+.+ +.|.+.+++ +++..++|+++-.+
T Consensus         1 ~kiliiG~-G~~~~~l~~~~~~~-~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~d~~~l~~-~~~~~~id~vi~~~   72 (423)
T TIGR00877         1 MKVLVIGN-GGREHALAWKLAQS-PLVKYVYVAPGNAGT--ARLA---KNKNVAISITDIEALVE-FAKKKKIDLAVIGP   72 (423)
T ss_pred             CEEEEECC-ChHHHHHHHHHHhC-CCccEEEEECCCHHH--hhhc---ccccccCCCCCHHHHHH-HHHHhCCCEEEECC
Confidence            69999997 88899999998865 333333334322111  1000   0011111 345555432 12235788887544


Q ss_pred             CchhHHHHHHHHHHcCCCeE
Q 022057          115 DASTVYDNVKQATAFGMRSV  134 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vV  134 (303)
                      .-.........+.++|++++
T Consensus        73 e~~l~~~~~~~l~~~gi~~~   92 (423)
T TIGR00877        73 EAPLVLGLVDALEEAGIPVF   92 (423)
T ss_pred             chHHHHHHHHHHHHCCCeEE
Confidence            32222345556667788765

This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=88.32  E-value=9.1  Score=38.78  Aligned_cols=51  Identities=24%  Similarity=0.295  Sum_probs=37.1

Q ss_pred             cccccceEEEee--cCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           17 QNVKAKRFISCS--TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        17 ~~~~~~~~~~~~--~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      ++.+-|+|++-+  |.+..-++|..=+-.||+||.++++++. ..|.+++-+.-
T Consensus       252 ~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~-~~GA~VtlI~G  304 (475)
T PRK13982        252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAA-AAGAEVTLISG  304 (475)
T ss_pred             cccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHH-HCCCcEEEEeC
Confidence            457777766544  3333336899999999999999999887 46777766553

>cd08230 glucose_DH Glucose dehydrogenase

Probab=88.26  E-value=1.9  Score=40.97  Aligned_cols=93  Identities=16%  Similarity=0.230  Sum_probs=50.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeec----CCHHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVvI  111 (303)
                      -+|.|.|+ |.+|...++.+. ..+.+++++ ++.....+..+++   .++|+...    .++++ ...   ...+|++|
T Consensus       174 ~~vlI~G~-G~vG~~a~q~ak-~~G~~vi~~-~~~~~~~~~~~~~---~~~Ga~~v~~~~~~~~~-~~~---~~~~d~vi  243 (355)
T cd08230         174 RRALVLGA-GPIGLLAALLLR-LRGFEVYVL-NRRDPPDPKADIV---EELGATYVNSSKTPVAE-VKL---VGEFDLII  243 (355)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HcCCeEEEE-ecCCCCHHHHHHH---HHcCCEEecCCccchhh-hhh---cCCCCEEE
Confidence            47999997 999999998655 457776664 3311001111122   12333221    12222 110   13589999


Q ss_pred             EcCCc-hhHHHHHHHHHHcCCCeEEeCC
Q 022057          112 DFTDA-STVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       112 DfT~p-~a~~~~~~~al~~g~~vVigTT  138 (303)
                      |++.. ....+.+......|.=+.+|.+
T Consensus       244 d~~g~~~~~~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         244 EATGVPPLAFEALPALAPNGVVILFGVP  271 (355)
T ss_pred             ECcCCHHHHHHHHHHccCCcEEEEEecC
Confidence            98854 4445555555555665567765

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=88.12  E-value=2.8  Score=41.56  Aligned_cols=33  Identities=30%  Similarity=0.506  Sum_probs=26.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      +..|.|+|++|+.||.+++.+.+ .++.+-+++.
T Consensus        79 ~~~VlVvGatG~vG~~iv~~llk-rgf~vra~VR  111 (411)
T KOG1203|consen   79 PTTVLVVGATGKVGRRIVKILLK-RGFSVRALVR  111 (411)
T ss_pred             CCeEEEecCCCchhHHHHHHHHH-CCCeeeeecc
Confidence            58999999999999999998885 4566655553

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=88.01  E-value=3.3  Score=39.15  Aligned_cols=92  Identities=17%  Similarity=0.145  Sum_probs=48.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee---c--CCHHHHHhccccCCCccEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---M--SDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v---~--~dl~~~l~~~~~~~~~DVv  110 (303)
                      -+|.|+|+ |.+|...++.+. ..+.+-+-+++.+.  .. .+++   .++|+..   +  .++++....   ...+|++
T Consensus       171 ~~VlV~G~-G~vG~~aiqlak-~~G~~~Vi~~~~~~--~~-~~~a---~~lGa~~vi~~~~~~~~~~~~~---~g~~D~v  239 (343)
T PRK09880        171 KRVFVSGV-GPIGCLIVAAVK-TLGAAEIVCADVSP--RS-LSLA---REMGADKLVNPQNDDLDHYKAE---KGYFDVS  239 (343)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HcCCcEEEEEeCCH--HH-HHHH---HHcCCcEEecCCcccHHHHhcc---CCCCCEE
Confidence            37999997 999999998665 45764333344321  11 1122   1233211   1  134444321   1247999


Q ss_pred             EEcCCc-hhHHHHHHHHHHcCCCeEEeCC
Q 022057          111 IDFTDA-STVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       111 IDfT~p-~a~~~~~~~al~~g~~vVigTT  138 (303)
                      +|++-. +.....+......|+=+.+|.+
T Consensus       240 id~~G~~~~~~~~~~~l~~~G~iv~~G~~  268 (343)
T PRK09880        240 FEVSGHPSSINTCLEVTRAKGVMVQVGMG  268 (343)
T ss_pred             EECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence            998864 3444444444445555556654

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=88.00  E-value=1.6  Score=41.04  Aligned_cols=95  Identities=14%  Similarity=0.139  Sum_probs=51.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe---eec---CCHHHHHhccccCCCccE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVM---SDLTMVLGSISQSKARAV  109 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv---~v~---~dl~~~l~~~~~~~~~DV  109 (303)
                      -+|.|.|++|.+|+..++.+. ..+.++++...+..   ....+..   .+|+   -.+   .++.+.+.... ...+|+
T Consensus       153 ~~VlI~Ga~G~vG~~aiqlAk-~~G~~Vi~~~~~~~---~~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~-~~gvd~  224 (338)
T cd08295         153 ETVFVSAASGAVGQLVGQLAK-LKGCYVVGSAGSDE---KVDLLKN---KLGFDDAFNYKEEPDLDAALKRYF-PNGIDI  224 (338)
T ss_pred             CEEEEecCccHHHHHHHHHHH-HcCCEEEEEeCCHH---HHHHHHH---hcCCceeEEcCCcccHHHHHHHhC-CCCcEE
Confidence            369999999999999998655 57888776554321   1111110   0221   111   13333332111 135788


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~g~~vVigTT  138 (303)
                      ++|++......+.+......|.=+.+|..
T Consensus       225 v~d~~g~~~~~~~~~~l~~~G~iv~~G~~  253 (338)
T cd08295         225 YFDNVGGKMLDAVLLNMNLHGRIAACGMI  253 (338)
T ss_pred             EEECCCHHHHHHHHHHhccCcEEEEeccc
Confidence            88887655444444444455555555543

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=87.97  E-value=4.1  Score=38.70  Aligned_cols=108  Identities=18%  Similarity=0.131  Sum_probs=55.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC------CCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~------~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (303)
                      |||.|+|+ |.||..++-.+.+.. ..+.....++.      .|-.+....+ ........+.+.+.+       ..+|+
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~-~~~~~~~~~~~~~~~-------~~~Dl   70 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGG-NFTTPVVAATDAEAL-------GPADL   70 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCC-ccccccccccChhhc-------CCCCE
Confidence            69999998 999999999888665 44443332210      1211111111 000111112222222       47899


Q ss_pred             EEEcCCchhHHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHhhhc
Q 022057          110 VIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKA  155 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~a---l~~g~~vVigTTG~~~e~~~~L~~~a~~~  155 (303)
                      +|-++-.-.+.+.+...   +.....|++==-|+.-.+  .+.+...+.
T Consensus        71 viv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e--~l~~~~~~~  117 (307)
T COG1893          71 VIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEE--ELRKILPKE  117 (307)
T ss_pred             EEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH--HHHHhCCcc
Confidence            99887544444444333   333333443333775443  666666553

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=87.96  E-value=2  Score=42.82  Aligned_cols=86  Identities=16%  Similarity=0.136  Sum_probs=48.9

Q ss_pred             ceeEEEEcCCcHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecC-CHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVvID  112 (303)
                      +.||.|+|. |+.|.. +++.+. ..+.++.+ .|.... ....++    .+.|+.++. ...+.+      .++|+||-
T Consensus         7 ~~~v~viG~-G~sG~s~~a~~L~-~~G~~V~~-~D~~~~-~~~~~l----~~~gi~~~~~~~~~~~------~~~d~vv~   72 (461)
T PRK00421          7 IKRIHFVGI-GGIGMSGLAEVLL-NLGYKVSG-SDLKES-AVTQRL----LELGAIIFIGHDAENI------KDADVVVY   72 (461)
T ss_pred             CCEEEEEEE-chhhHHHHHHHHH-hCCCeEEE-ECCCCC-hHHHHH----HHCCCEEeCCCCHHHC------CCCCEEEE
Confidence            358999998 999999 688666 57888764 664321 122222    234665542 223334      36898875


Q ss_pred             cCCchhHHHHHHHHHHcCCCeE
Q 022057          113 FTDASTVYDNVKQATAFGMRSV  134 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vV  134 (303)
                      ...-....+.++.|.++|+|++
T Consensus        73 spgi~~~~~~~~~a~~~~i~i~   94 (461)
T PRK00421         73 SSAIPDDNPELVAARELGIPVV   94 (461)
T ss_pred             CCCCCCCCHHHHHHHHCCCcEE
Confidence            4321122334455555565554

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=87.93  E-value=4.8  Score=35.94  Aligned_cols=86  Identities=16%  Similarity=0.174  Sum_probs=53.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHH-HHHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLT-MVLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~-~~l~~~~~~~~~DVvIDf  113 (303)
                      -||.|+|+ |++|..-++.+.+ .+..++ +++++. ..+..++..   ...+.. ..+++ +.+      ..+|.||-.
T Consensus        10 k~vlVvGg-G~va~rk~~~Ll~-~ga~Vt-Vvsp~~-~~~l~~l~~---~~~i~~~~~~~~~~dl------~~~~lVi~a   76 (205)
T TIGR01470        10 RAVLVVGG-GDVALRKARLLLK-AGAQLR-VIAEEL-ESELTLLAE---QGGITWLARCFDADIL------EGAFLVIAA   76 (205)
T ss_pred             CeEEEECc-CHHHHHHHHHHHH-CCCEEE-EEcCCC-CHHHHHHHH---cCCEEEEeCCCCHHHh------CCcEEEEEC
Confidence            48999998 9999998888875 566655 555532 233333331   223332 11221 233      478888877


Q ss_pred             CCc-hhHHHHHHHHHHcCCCeE
Q 022057          114 TDA-STVYDNVKQATAFGMRSV  134 (303)
Q Consensus       114 T~p-~a~~~~~~~al~~g~~vV  134 (303)
                      |.- +.-......|.+.|+++-
T Consensus        77 t~d~~ln~~i~~~a~~~~ilvn   98 (205)
T TIGR01470        77 TDDEELNRRVAHAARARGVPVN   98 (205)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEE
Confidence            744 345667778888898874

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.86  E-value=1.7  Score=42.74  Aligned_cols=133  Identities=15%  Similarity=0.132  Sum_probs=70.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .||.|+|. |++|..+++.+. +.+.++++ +|.+...........   .   ....+.+...      .++|++|-...
T Consensus         4 ~~i~iiGl-G~~G~slA~~l~-~~G~~V~g-~D~~~~~~~~~~~~~---~---~~~~~~~~~~------~~~dlvV~s~g   68 (418)
T PRK00683          4 QRVVVLGL-GVTGKSIARFLA-QKGVYVIG-VDKSLEALQSCPYIH---E---RYLENAEEFP------EQVDLVVRSPG   68 (418)
T ss_pred             CeEEEEEE-CHHHHHHHHHHH-HCCCEEEE-EeCCccccchhHHHh---h---hhcCCcHHHh------cCCCEEEECCC
Confidence            48999998 999999998877 46677554 775321000000000   0   0011222333      35788875553


Q ss_pred             chhHHHHHHHHHHcCCCeEEe-----------------CCCCCH--HHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHH
Q 022057          116 ASTVYDNVKQATAFGMRSVVY-----------------VPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~vVig-----------------TTG~~~--e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a  176 (303)
                      .....+.+..|.+.|+++|..                 -||-+-  --..-|..+-++.+.+.....|  +|+.++... 
T Consensus        69 i~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~Gn--iG~p~l~~~-  145 (418)
T PRK00683         69 IKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGN--IGIPILDGM-  145 (418)
T ss_pred             CCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECC--cCHHHHHHh-
Confidence            334466666777766665532                 233210  0112234444455556677777  666554422 


Q ss_pred             HHhccCCCcEEEEEc
Q 022057          177 ISASFHYKNVEIVES  191 (303)
Q Consensus       177 ~~~~~~~~dieIiE~  191 (303)
                         ..  .|+-++|.
T Consensus       146 ---~~--~~~~V~E~  155 (418)
T PRK00683        146 ---QQ--PGVRVVEI  155 (418)
T ss_pred             ---hc--CCEEEEEe
Confidence               21  46678886

>PRK06199 ornithine cyclodeaminase; Validated

Probab=87.84  E-value=1.1  Score=43.93  Aligned_cols=91  Identities=13%  Similarity=0.218  Sum_probs=58.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhc-CCCCC----CeeecCCHHHHHhccccCCCcc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCD-MEQPL----EIPVMSDLTMVLGSISQSKARA  108 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~----gv~v~~dl~~~l~~~~~~~~~D  108 (303)
                      .-+++|+|+ |.+++.+++++.. .|+++=+-+++++.  ..+..++. +.+.+    .+.+.+|.++++      .++|
T Consensus       155 a~~l~iiG~-G~QA~~~l~a~~~v~~~i~~V~v~~r~~--~~a~~f~~~~~~~~~~~~~v~~~~s~~eav------~~AD  225 (379)
T PRK06199        155 SKVVGLLGP-GVMGKTILAAFMAVCPGIDTIKIKGRGQ--KSLDSFATWVAETYPQITNVEVVDSIEEVV------RGSD  225 (379)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHhcCCccEEEEECCCH--HHHHHHHHHHHHhcCCCceEEEeCCHHHHH------cCCC
Confidence            357999997 9999999999887 45688888888753  12222211 00122    266688999998      4799


Q ss_pred             EEEEcCCchh----HHHHH-HHHHHcCCCeE
Q 022057          109 VVIDFTDAST----VYDNV-KQATAFGMRSV  134 (303)
Q Consensus       109 VvIDfT~p~a----~~~~~-~~al~~g~~vV  134 (303)
                      ||+-+|+...    ..+.+ ...++-|.++.
T Consensus       226 IVvtaT~s~~~~~s~~Pv~~~~~lkpG~hv~  256 (379)
T PRK06199        226 IVTYCNSGETGDPSTYPYVKREWVKPGAFLL  256 (379)
T ss_pred             EEEEccCCCCCCCCcCcEecHHHcCCCcEEe
Confidence            9987664211    11222 23457888776

>PRK07326 short chain dehydrogenase; Provisional

Probab=87.72  E-value=3.6  Score=36.16  Aligned_cols=82  Identities=21%  Similarity=0.233  Sum_probs=49.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.+ +++.  ....++               .+.+..   ...++ +..|.+
T Consensus         7 ~~ilItGatg~iG~~la~~l~~-~g~~V~~~-~r~~--~~~~~~---------------~~~l~~---~~~~~~~~~D~~   64 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLA-EGYKVAIT-ARDQ--KELEEA---------------AAELNN---KGNVLGLAADVR   64 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHH-CCCEEEEe-eCCH--HHHHHH---------------HHHHhc---cCcEEEEEccCC
Confidence            5799999999999999999985 58886654 4431  111111               111110   01233 234777


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++|+=..|
T Consensus        65 ~~~~~~~~~~~~~~~~~~~d~vi~~ag   91 (237)
T PRK07326         65 DEADVQRAVDAIVAAFGGLDVLIANAG   91 (237)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777777766655443  5777776554

>PRK12939 short chain dehydrogenase; Provisional

Probab=87.68  E-value=6.2  Score=34.78  Aligned_cols=84  Identities=20%  Similarity=0.289  Sum_probs=53.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++.. +++.  ....+..              +++...   ..+++ +..|++
T Consensus         8 ~~vlItGa~g~iG~~la~~l~~-~G~~v~~~-~r~~--~~~~~~~--------------~~~~~~---~~~~~~~~~Dl~   66 (250)
T PRK12939          8 KRALVTGAARGLGAAFAEALAE-AGATVAFN-DGLA--AEARELA--------------AALEAA---GGRAHAIAADLA   66 (250)
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-cCCEEEEE-eCCH--HHHHHHH--------------HHHHhc---CCcEEEEEccCC
Confidence            6799999999999999998874 57887764 4331  1111110              111110   01233 345889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.....+..+.+.  ++.+|+-..|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~id~vi~~ag~   94 (250)
T PRK12939         67 DPASVQRFFDAAAAALGGLDGLVNNAGI   94 (250)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            888887777766553  67888877764

>PRK13789 phosphoribosylamine--glycine ligase; Provisional

Probab=87.55  E-value=3.8  Score=40.70  Aligned_cols=117  Identities=12%  Similarity=0.028  Sum_probs=58.4

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ++|||.|+|. |.==.+++..+.+.+...-+... +...|..  ...   ....+++ ..|.+++++ .++..++|.||-
T Consensus         3 ~~~kvLviG~-g~rehal~~~~~~~~~~~~~~~~-pgn~g~~--~~~---~~~~~~~~~~d~~~l~~-~a~~~~iD~Vv~   74 (426)
T PRK13789          3 VKLKVLLIGS-GGRESAIAFALRKSNLLSELKVF-PGNGGFP--DDE---LLPADSFSILDKSSVQS-FLKSNPFDLIVV   74 (426)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHhCCCCCEEEEE-CCchHHh--ccc---cccccCcCcCCHHHHHH-HHHHcCCCEEEE
Confidence            4589999997 76667788888877755433322 2111110  000   0111122 356665543 123357898873


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCCCCCH---HHHHHHHHHhhhcCCeE
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQL---ETVSALSAFCDKASMGC  159 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~---e~~~~L~~~a~~~~i~v  159 (303)
                      ...-......+..+.+.|+|++ |.+-...   ......+++.++.|+|.
T Consensus        75 g~E~~l~~glad~~~~~Gip~~-Gp~~~aa~le~dK~~~K~~l~~~gIpt  123 (426)
T PRK13789         75 GPEDPLVAGFADWAAELGIPCF-GPDSYCAQVEGSKHFAKSLMKEAKIPT  123 (426)
T ss_pred             CCchHHHHHHHHHHHHcCCCcC-CCHHHHHHHHcCHHHHHHHHHHcCCCC
Confidence            2222222345566778888865 4321100   01223455566666664

>PRK06483 dihydromonapterin reductase; Provisional

Probab=87.48  E-value=7.5  Score=34.24  Aligned_cols=81  Identities=15%  Similarity=0.181  Sum_probs=50.3

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID  112 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvID  112 (303)
                      |+.++.|.|++|.+|+.+++.+.+ .+.+++.. +++.  .+..                 +++ ..    .... +..|
T Consensus         1 ~~k~vlItGas~gIG~~ia~~l~~-~G~~V~~~-~r~~--~~~~-----------------~~~-~~----~~~~~~~~D   54 (236)
T PRK06483          1 MPAPILITGAGQRIGLALAWHLLA-QGQPVIVS-YRTH--YPAI-----------------DGL-RQ----AGAQCIQAD   54 (236)
T ss_pred             CCceEEEECCCChHHHHHHHHHHH-CCCeEEEE-eCCc--hhHH-----------------HHH-HH----cCCEEEEcC
Confidence            456899999999999999998874 57787764 4331  1100                 111 10    1111 3457


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .+.++...+.+....+.  ++++++-..|.
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~id~lv~~ag~   84 (236)
T PRK06483         55 FSTNAGIMAFIDELKQHTDGLRAIIHNASD   84 (236)
T ss_pred             CCCHHHHHHHHHHHHhhCCCccEEEECCcc
Confidence            78888777777665542  37777766653

>PRK06139 short chain dehydrogenase; Provisional

Probab=87.46  E-value=4.4  Score=38.65  Aligned_cols=81  Identities=27%  Similarity=0.275  Sum_probs=51.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---EEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (303)
                      ..|.|.|++|.+|+.+++.+.+ .+.+|+. ++++.  ....++.              +++-+     ...+   +..|
T Consensus         8 k~vlITGAs~GIG~aia~~la~-~G~~Vvl-~~R~~--~~l~~~~--------------~~~~~-----~g~~~~~~~~D   64 (330)
T PRK06139          8 AVVVITGASSGIGQATAEAFAR-RGARLVL-AARDE--EALQAVA--------------EECRA-----LGAEVLVVPTD   64 (330)
T ss_pred             CEEEEcCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHh-----cCCcEEEEEee
Confidence            4799999999999999999885 5788774 44431  1111111              11111     1222   2458


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .+.++.+.+.+..+.+.  ++++++-..|
T Consensus        65 v~d~~~v~~~~~~~~~~~g~iD~lVnnAG   93 (330)
T PRK06139         65 VTDADQVKALATQAASFGGRIDVWVNNVG   93 (330)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            88888888877776654  5788887765

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=87.45  E-value=2  Score=37.36  Aligned_cols=32  Identities=25%  Similarity=0.375  Sum_probs=24.0

Q ss_pred             ceeEEEEcCCcHH-HHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEI-GRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrM-G~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ..||.|+|+ |.| |+.+++.+.+ .+.++ -++++
T Consensus        44 gk~vlViG~-G~~~G~~~a~~L~~-~g~~V-~v~~r   76 (168)
T cd01080          44 GKKVVVVGR-SNIVGKPLAALLLN-RNATV-TVCHS   76 (168)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhh-CCCEE-EEEEC
Confidence            479999998 998 8889998875 56664 34554

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=87.41  E-value=2.2  Score=35.32  Aligned_cols=29  Identities=24%  Similarity=0.342  Sum_probs=23.7

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      |+|+|+ |.||..++-.+.+ .+.++.-+..
T Consensus         1 I~I~G~-GaiG~~~a~~L~~-~g~~V~l~~r   29 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQ-AGHDVTLVSR   29 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CEEECc-CHHHHHHHHHHHH-CCCceEEEEc
Confidence            789998 9999999999876 7777665443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=87.35  E-value=8.8  Score=38.69  Aligned_cols=106  Identities=10%  Similarity=0.063  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCCeeecCCHHHHHhccccCCCccEEEEc-CCchhHHHHHH
Q 022057           47 IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKARAVVIDF-TDASTVYDNVK  124 (303)
Q Consensus        47 MG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf-T~p~a~~~~~~  124 (303)
                      ||+.++..+.+ .+++|+ ++|++.  ....++... +...++....|++++.+++   ..+|+|+-. +.++++.+.+.
T Consensus         1 MG~~mA~nL~~-~G~~V~-v~nrt~--~~~~~l~~~~g~~~g~~~~~s~~e~v~~l---~~~~~Ii~mv~~g~~v~~Vi~   73 (459)
T PRK09287          1 MGKNLALNIAS-HGYTVA-VYNRTP--EKTDEFLAEEGKGKKIVPAYTLEEFVASL---EKPRKILLMVKAGAPVDAVIE   73 (459)
T ss_pred             CcHHHHHHHHh-CCCeEE-EECCCH--HHHHHHHHhhCCCCCeEeeCCHHHHHhhC---CCCCEEEEECCCchHHHHHHH
Confidence            88999998874 688875 678752  222333310 0112467788999988632   358887753 34445555543


Q ss_pred             H---HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057          125 Q---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus       125 ~---al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      .   .++.|.=+|-++|.. .++..++.+.+++.|+..+
T Consensus        74 ~l~~~l~~GdiiID~gn~~-~~~t~~~~~~l~~~Gi~fv  111 (459)
T PRK09287         74 QLLPLLEKGDIIIDGGNSN-YKDTIRREKELAEKGIHFI  111 (459)
T ss_pred             HHHhcCCCCCEEEECCCCC-HHHHHHHHHHHHhcCCeEE
Confidence            3   334454344444433 3344455565666676643

>PRK07074 short chain dehydrogenase; Provisional

Probab=87.35  E-value=5  Score=35.82  Aligned_cols=83  Identities=22%  Similarity=0.254  Sum_probs=51.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf  113 (303)
                      +.++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++.               +-+.    ...+. +-.|.
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~-~g~~v~~-~~r~~--~~~~~~~---------------~~~~----~~~~~~~~~D~   58 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLA-AGDRVLA-LDIDA--AALAAFA---------------DALG----DARFVPVACDL   58 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH---------------HHhc----CCceEEEEecC
Confidence            34799999999999999999875 5788766 44431  1111111               1111    02333 24678


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      +.++.....+..+.+.  ++.+|+-..|.
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~   87 (257)
T PRK07074         59 TDAASLAAALANAAAERGPVDVLVANAGA   87 (257)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            8888776666655442  57888877764

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=87.30  E-value=8  Score=37.41  Aligned_cols=92  Identities=15%  Similarity=0.087  Sum_probs=49.0

Q ss_pred             HHHHHHHHHhcCCcEEEEEEecCCC--CcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCCchh-HHHHHH
Q 022057           48 GRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST-VYDNVK  124 (303)
Q Consensus        48 G~~i~~~i~~~~~~eLvg~vd~~~~--g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p~a-~~~~~~  124 (303)
                      |..++..+.+ .++++.. +|++..  ..+..+..   ...|+.+.+|..+++      .++|+||-+.++.. ..+.+.
T Consensus        32 G~~MA~~La~-aG~~V~v-~Dr~~~~l~~~~~~~l---~~~Gi~~asd~~eaa------~~ADvVIlaVP~~~~v~~Vl~  100 (342)
T PRK12557         32 GSRMAIEFAE-AGHDVVL-AEPNRSILSEELWKKV---EDAGVKVVSDDAEAA------KHGEIHILFTPFGKKTVEIAK  100 (342)
T ss_pred             HHHHHHHHHh-CCCeEEE-EECCHHHhhHHHHHHH---HHCCCEEeCCHHHHH------hCCCEEEEECCCcHHHHHHHH
Confidence            4556665553 4666654 565421  00011111   245677777888877      47999998877666 455544


Q ss_pred             HH---HHcCCCeEEeCCCCCHHHH-HHHHHH
Q 022057          125 QA---TAFGMRSVVYVPHIQLETV-SALSAF  151 (303)
Q Consensus       125 ~a---l~~g~~vVigTTG~~~e~~-~~L~~~  151 (303)
                      ..   +..|.-++..+|+ +.... +.+.+.
T Consensus       101 ~L~~~L~~g~IVId~ST~-~~~~~s~~l~~~  130 (342)
T PRK12557        101 NILPHLPENAVICNTCTV-SPVVLYYSLEGE  130 (342)
T ss_pred             HHHhhCCCCCEEEEecCC-CHHHHHHHHHHH
Confidence            33   3345444443444 44443 445444

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.26  E-value=5.4  Score=35.68  Aligned_cols=79  Identities=20%  Similarity=0.198  Sum_probs=51.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++....+..   +.                 .+++..     .++ -+..|.+
T Consensus         8 k~~lItGas~gIG~~~a~~l~~-~G~~v~~~~~~~~---~~-----------------~~~l~~-----~~~~~~~~Dl~   61 (255)
T PRK06463          8 KVALITGGTRGIGRAIAEAFLR-EGAKVAVLYNSAE---NE-----------------AKELRE-----KGVFTIKCDVG   61 (255)
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCcH---HH-----------------HHHHHh-----CCCeEEEecCC
Confidence            5799999999999999999885 5777765432211   10                 011111     112 2456888


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++...+.+..+.+.  ++++|+-..|.
T Consensus        62 ~~~~~~~~~~~~~~~~~~id~li~~ag~   89 (255)
T PRK06463         62 NRDQVKKSKEVVEKEFGRVDVLVNNAGI   89 (255)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            888888877766654  57788766653

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=87.22  E-value=1.8  Score=40.90  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=23.3

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      |+|+|+ |.+|..++-.+....-..=+..+|..
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~   32 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVN   32 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            589998 99999999888765433334467753

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.07  E-value=4.4  Score=39.10  Aligned_cols=96  Identities=22%  Similarity=0.234  Sum_probs=59.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .+|+|+|+ |.+|..-++... .=++++++ +|+..                    .+-++++..    ..+|..|||+.
T Consensus       183 ~~vgI~Gl-GGLGh~aVq~AK-AMG~rV~v-is~~~--------------------~kkeea~~~----LGAd~fv~~~~  235 (360)
T KOG0023|consen  183 KWVGIVGL-GGLGHMAVQYAK-AMGMRVTV-ISTSS--------------------KKKEEAIKS----LGADVFVDSTE  235 (360)
T ss_pred             cEEEEecC-cccchHHHHHHH-HhCcEEEE-EeCCc--------------------hhHHHHHHh----cCcceeEEecC
Confidence            68999998 669999888655 45888886 44321                    012455543    46788888884


Q ss_pred             chhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEE
Q 022057          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI  161 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~  161 (303)
                      -....+.+..++.-+++-|+   -+++..++.+..+.+.+|.-+++
T Consensus       236 d~d~~~~~~~~~dg~~~~v~---~~a~~~~~~~~~~lk~~Gt~V~v  278 (360)
T KOG0023|consen  236 DPDIMKAIMKTTDGGIDTVS---NLAEHALEPLLGLLKVNGTLVLV  278 (360)
T ss_pred             CHHHHHHHHHhhcCcceeee---eccccchHHHHHHhhcCCEEEEE
Confidence            44445555666666666555   22333345566677776654443

>PRK06523 short chain dehydrogenase; Provisional

Probab=87.06  E-value=9.2  Score=34.16  Aligned_cols=30  Identities=27%  Similarity=0.468  Sum_probs=25.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~   66 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus        10 k~vlItGas~gIG~~ia~~l~~-~G~~v~~~   39 (260)
T PRK06523         10 KRALVTGGTKGIGAATVARLLE-AGARVVTT   39 (260)
T ss_pred             CEEEEECCCCchhHHHHHHHHH-CCCEEEEE
Confidence            6899999999999999999885 58887654

>PRK07589 ornithine cyclodeaminase; Validated

Probab=87.05  E-value=1.7  Score=42.08  Aligned_cols=90  Identities=12%  Similarity=0.085  Sum_probs=59.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC--CCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ--PLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~--~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      -+++|+|+ |..++.+++++..-..++=+-+++++.  ..+..++....  ...+.+.+|.++++.      ++|||+-.
T Consensus       130 ~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~--~~a~~~~~~~~~~~~~v~~~~~~~~av~------~ADIIvta  200 (346)
T PRK07589        130 RTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDP--AATAKLARNLAGPGLRIVACRSVAEAVE------GADIITTV  200 (346)
T ss_pred             cEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCH--HHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEEe
Confidence            57999997 999999999888777777777888653  12222221001  134556789999984      79999977


Q ss_pred             CCchhHHHHH-HHHHHcCCCeE
Q 022057          114 TDASTVYDNV-KQATAFGMRSV  134 (303)
Q Consensus       114 T~p~a~~~~~-~~al~~g~~vV  134 (303)
                      |+.....+.+ ...++-|.++.
T Consensus       201 T~S~~~~Pvl~~~~lkpG~hV~  222 (346)
T PRK07589        201 TADKTNATILTDDMVEPGMHIN  222 (346)
T ss_pred             cCCCCCCceecHHHcCCCcEEE
Confidence            7422111222 24568888876

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=87.05  E-value=1.6  Score=42.69  Aligned_cols=154  Identities=17%  Similarity=0.178  Sum_probs=89.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc---CCcEEEEEEecC--CCCcchhhhhcCCC----CCC-eeecC-----CHHHHHh
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSH--SVGEDIGMVCDMEQ----PLE-IPVMS-----DLTMVLG   99 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~---~~~eLvg~vd~~--~~g~d~~~~~g~~~----~~g-v~v~~-----dl~~~l~   99 (303)
                      ..-+.|.||+|-.|+.+++.+...   ++..+. +.-++  +..+-+ +.++...    +.. +.+.+     +++++. 
T Consensus         5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~sla-vAGRn~~KL~~vL-~~~~~k~~~~ls~~~i~i~D~~n~~Sl~ema-   81 (423)
T KOG2733|consen    5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLA-VAGRNEKKLQEVL-EKVGEKTGTDLSSSVILIADSANEASLDEMA-   81 (423)
T ss_pred             eeeEEEEccccccceeeHHHHhhhhcccCceEE-EecCCHHHHHHHH-HHHhhccCCCcccceEEEecCCCHHHHHHHH-
Confidence            357899999999999999887752   344332 22222  111111 1111100    011 22222     366665 


Q ss_pred             ccccCCCccEEEEcCCchhH--HHHHHHHHHcCCCeE--EeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC-----cHHHH
Q 022057          100 SISQSKARAVVIDFTDASTV--YDNVKQATAFGMRSV--VYVPHIQLETVSALSAFCDKASMGCLIAPTL-----SIGSI  170 (303)
Q Consensus       100 ~~~~~~~~DVvIDfT~p~a~--~~~~~~al~~g~~vV--igTTG~~~e~~~~L~~~a~~~~i~vv~a~N~-----SiGv~  170 (303)
                           ..+-|+|.+--|--+  ...++.|+++|.+-|  .|-|-|-+--..+-.+.|+++|+.++=+.-|     -+|++
T Consensus        82 -----k~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVsaCGfDSIPaDlGv~  156 (423)
T KOG2733|consen   82 -----KQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVSACGFDSIPADLGVM  156 (423)
T ss_pred             -----hhhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEeecccCCCCccceee
Confidence                 468899988877554  778899999999876  3333343333345567899999998877765     46665


Q ss_pred             HHHHHHHHhccCCCcEEEEEc--c-CCCCCCCcHHHH
Q 022057          171 LLQQAAISASFHYKNVEIVES--R-PNARDFPSPDAT  204 (303)
Q Consensus       171 ll~~~a~~~~~~~~dieIiE~--H-h~K~DaPSGTA~  204 (303)
                      .+.+   .+.   -++.-+|.  | |.|  -|||+++
T Consensus       157 f~~k---~fd---g~ln~VEsfl~Lh~~--gp~G~sl  185 (423)
T KOG2733|consen  157 FLRK---NFD---GVLNHVESFLQLHSK--GPSGYSL  185 (423)
T ss_pred             eehh---hcc---ccHHHHHHHHhhhcc--CCccccc
Confidence            4432   111   23334565  2 345  6999765

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=86.97  E-value=1.4  Score=41.21  Aligned_cols=71  Identities=23%  Similarity=0.267  Sum_probs=42.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeeecCC---HHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSD---LTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-~~~gv~v~~d---l~~~l~~~~~~~~~DVvI  111 (303)
                      .++.|+|+ |.+||.++..+.+ .+++=+-+++++.  ..+..++... ....+....+   +.+.+      .++|+||
T Consensus       126 k~vlvlGa-GGaarai~~aL~~-~G~~~i~I~nRt~--~ka~~La~~~~~~~~~~~~~~~~~~~~~~------~~~DiVI  195 (282)
T TIGR01809       126 FRGLVIGA-GGTSRAAVYALAS-LGVTDITVINRNP--DKLSRLVDLGVQVGVITRLEGDSGGLAIE------KAAEVLV  195 (282)
T ss_pred             ceEEEEcC-cHHHHHHHHHHHH-cCCCeEEEEeCCH--HHHHHHHHHhhhcCcceeccchhhhhhcc------cCCCEEE
Confidence            58999998 9999999998874 5665566677642  2233333110 0111222222   22333      4689999


Q ss_pred             EcCCc
Q 022057          112 DFTDA  116 (303)
Q Consensus       112 DfT~p  116 (303)
                      ..|+.
T Consensus       196 naTp~  200 (282)
T TIGR01809       196 STVPA  200 (282)
T ss_pred             ECCCC
Confidence            88853

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.70  E-value=3.7  Score=36.41  Aligned_cols=81  Identities=21%  Similarity=0.256  Sum_probs=48.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++...++..  .....+               .+.+.     .++. +..|++
T Consensus         6 k~ilItGas~gIG~~la~~l~~-~G~~vv~~~~~~~--~~~~~~---------------~~~~~-----~~~~~~~~D~~   62 (253)
T PRK08642          6 QTVLVTGGSRGLGAAIARAFAR-EGARVVVNYHQSE--DAAEAL---------------ADELG-----DRAIALQADVT   62 (253)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHH-CCCeEEEEcCCCH--HHHHHH---------------HHHhC-----CceEEEEcCCC
Confidence            4799999999999999998874 5788775443321  111111               01110     1222 235788


Q ss_pred             CchhHHHHHHHHHHc---CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF---GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~---g~~vVigTTG  139 (303)
                      .++...+.+..+.+.   ++++|+-..|
T Consensus        63 ~~~~~~~~~~~~~~~~g~~id~li~~ag   90 (253)
T PRK08642         63 DREQVQAMFATATEHFGKPITTVVNNAL   90 (253)
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence            888777766655433   2677776554

>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]

Probab=86.68  E-value=4.4  Score=38.99  Aligned_cols=127  Identities=18%  Similarity=0.265  Sum_probs=74.7

Q ss_pred             CCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--cCCHHHHHhccccCCCc
Q 022057           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKAR  107 (303)
Q Consensus        30 ~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~  107 (303)
                      ++.....||.+.|. |-.|+.++-.++ .=+.|+++ +|+-. .-.+-..+..  ++-+.-  .+.+..+++.    .+|
T Consensus         7 ~~~~~a~kvmLLGS-GELGKEvaIe~Q-RLG~eViA-VDrY~-~APAmqVAhr--s~Vi~MlD~~al~avv~r----ekP   76 (394)
T COG0027           7 PLRPQATKVMLLGS-GELGKEVAIEAQ-RLGVEVIA-VDRYA-NAPAMQVAHR--SYVIDMLDGDALRAVVER----EKP   76 (394)
T ss_pred             CCCCCCeEEEEecC-CccchHHHHHHH-hcCCEEEE-ecCcC-CChhhhhhhh--eeeeeccCHHHHHHHHHh----hCC
Confidence            34444589999995 999999998766 56899987 56421 1122222211  111111  1234445543    689


Q ss_pred             cEEEEcCCchhH-HHHHHHHHHcCCCeEEe------------------------CCCC-CHHHHHHHHHHhhhcCCeEEE
Q 022057          108 AVVIDFTDASTV-YDNVKQATAFGMRSVVY------------------------VPHI-QLETVSALSAFCDKASMGCLI  161 (303)
Q Consensus       108 DVvIDfT~p~a~-~~~~~~al~~g~~vVig------------------------TTG~-~~e~~~~L~~~a~~~~i~vv~  161 (303)
                      |.+|-=  -++. -+.+...-+.|..||=.                        |+.+ -.+.++++.+++++-|.|+++
T Consensus        77 d~IVpE--iEAI~td~L~elE~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfPcvv  154 (394)
T COG0027          77 DYIVPE--IEAIATDALVELEEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFPCVV  154 (394)
T ss_pred             Ceeeeh--hhhhhHHHHHHHHhCCceEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccHHHHHHHHHHcCCCeec
Confidence            987711  1222 34445556677775521                        1111 123456789999999999999


Q ss_pred             cCCCcHH
Q 022057          162 APTLSIG  168 (303)
Q Consensus       162 a~N~SiG  168 (303)
                      .|=||-.
T Consensus       155 KPvMSSS  161 (394)
T COG0027         155 KPVMSSS  161 (394)
T ss_pred             ccccccC
Confidence            9999864

>PRK06482 short chain dehydrogenase; Provisional

Probab=86.67  E-value=3.2  Score=37.66  Aligned_cols=83  Identities=23%  Similarity=0.215  Sum_probs=49.5

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID  112 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvID  112 (303)
                      |+.++.|.|++|.+|+.+++.+.+ .+..++.. +++.  ....++               .+...     .... +-.|
T Consensus         1 m~k~vlVtGasg~IG~~la~~L~~-~g~~v~~~-~r~~--~~~~~~---------------~~~~~-----~~~~~~~~D   56 (276)
T PRK06482          1 MSKTWFITGASSGFGRGMTERLLA-RGDRVAAT-VRRP--DALDDL---------------KARYG-----DRLWVLQLD   56 (276)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHH-CCCEEEEE-eCCH--HHHHHH---------------HHhcc-----CceEEEEcc
Confidence            345799999999999999999875 56776654 3321  111111               01110     1222 2457


Q ss_pred             cCCchhHHHHHHHHHH--cCCCeEEeCCCC
Q 022057          113 FTDASTVYDNVKQATA--FGMRSVVYVPHI  140 (303)
Q Consensus       113 fT~p~a~~~~~~~al~--~g~~vVigTTG~  140 (303)
                      .+.++...+.+..+.+  .++++|+-..|.
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~id~vi~~ag~   86 (276)
T PRK06482         57 VTDSAAVRAVVDRAFAALGRIDVVVSNAGY   86 (276)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            7888777776665544  246778776653

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=86.61  E-value=3.3  Score=45.66  Aligned_cols=119  Identities=13%  Similarity=0.137  Sum_probs=64.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh--hhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM--VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~--~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      -+|.|+|+ |++|..+++.+. ..|+.=+.++|..... .|++.  +..- +..|-+-.....+-+.+    -++.|-|+
T Consensus        25 s~VLIiG~-gGLG~EiaKnL~-laGVg~iti~D~d~v~~sdL~rQf~~~~-~dIGk~Kaea~~~~L~e----LNp~V~V~   97 (1008)
T TIGR01408        25 SNVLISGM-GGLGLEIAKNLV-LAGVKSVTLHDTEKCQAWDLSSNFFLSE-DDVGRNRAEAVVKKLAE----LNPYVHVS   97 (1008)
T ss_pred             CcEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCeecHhhCCCceecch-HHcCchHHHHHHHHHHH----HCCCceEE
Confidence            68999998 999999999987 5677777788853210 11110  0000 00110000001111221    35666554


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcC--CeEEEcCCCcH
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS--MGCLIAPTLSI  167 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~--i~vv~a~N~Si  167 (303)
                      .-......+.     =.+..+|+-|+. +.+..-.|.++|++.+  +|++++.-..+
T Consensus        98 ~~~~~l~~e~-----l~~fdvVV~t~~-~~~~~~~in~~cr~~~~~I~fI~~~~~G~  148 (1008)
T TIGR01408        98 SSSVPFNEEF-----LDKFQCVVLTEM-SLPLQKEINDFCHSQCPPIAFISADVRGL  148 (1008)
T ss_pred             EecccCCHHH-----HcCCCEEEECCC-CHHHHHHHHHHHHHcCCCeEEEEEeecce
Confidence            4322111222     236778887654 4455667888898888  88887654443

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PRK05872 short chain dehydrogenase; Provisional

Probab=86.59  E-value=5.3  Score=37.01  Aligned_cols=81  Identities=26%  Similarity=0.366  Sum_probs=51.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE---EEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---vID  112 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ..+.++               .+.+.     ...++   ..|
T Consensus        10 k~vlItGas~gIG~~ia~~l~~-~G~~V~~-~~r~~--~~l~~~---------------~~~l~-----~~~~~~~~~~D   65 (296)
T PRK05872         10 KVVVVTGAARGIGAELARRLHA-RGAKLAL-VDLEE--AELAAL---------------AAELG-----GDDRVLTVVAD   65 (296)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHH---------------HHHhc-----CCCcEEEEEec
Confidence            4799999999999999999874 6777654 44421  111111               11111     12233   268


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .+.++.+.+.+..+.+.  ++++|+-..|.
T Consensus        66 v~d~~~v~~~~~~~~~~~g~id~vI~nAG~   95 (296)
T PRK05872         66 VTDLAAMQAAAEEAVERFGGIDVVVANAGI   95 (296)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            89888888877766553  57888877764

>PRK07478 short chain dehydrogenase; Provisional

Probab=86.59  E-value=5.4  Score=35.61  Aligned_cols=84  Identities=19%  Similarity=0.199  Sum_probs=51.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++.. +++.  .+..++.              +++-+.   ..++. +..|.+
T Consensus         7 k~~lItGas~giG~~ia~~l~~-~G~~v~~~-~r~~--~~~~~~~--------------~~~~~~---~~~~~~~~~D~~   65 (254)
T PRK07478          7 KVAIITGASSGIGRAAAKLFAR-EGAKVVVG-ARRQ--AELDQLV--------------AEIRAE---GGEAVALAGDVR   65 (254)
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-CCCEEEEE-eCCH--HHHHHHH--------------HHHHhc---CCcEEEEEcCCC
Confidence            4799999999999999998875 57787654 4431  1111111              111100   01122 335888


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.....+..+.+.  ++++++-..|.
T Consensus        66 ~~~~~~~~~~~~~~~~~~id~li~~ag~   93 (254)
T PRK07478         66 DEAYAKALVALAVERFGGLDIAFNNAGT   93 (254)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            888887777766654  57888866653

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=86.54  E-value=6.2  Score=37.59  Aligned_cols=95  Identities=15%  Similarity=0.144  Sum_probs=51.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe---eec---CCHHHHHhccccCCCccE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVM---SDLTMVLGSISQSKARAV  109 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv---~v~---~dl~~~l~~~~~~~~~DV  109 (303)
                      -+|.|.|++|.+|+..++.+. ..+.++++...+..   ....+.   .++|+   .-+   .++.+.+.+.. ...+|+
T Consensus       160 ~~VlV~GaaG~vG~~aiqlAk-~~G~~Vi~~~~~~~---k~~~~~---~~lGa~~vi~~~~~~~~~~~i~~~~-~~gvD~  231 (348)
T PLN03154        160 DSVFVSAASGAVGQLVGQLAK-LHGCYVVGSAGSSQ---KVDLLK---NKLGFDEAFNYKEEPDLDAALKRYF-PEGIDI  231 (348)
T ss_pred             CEEEEecCccHHHHHHHHHHH-HcCCEEEEEcCCHH---HHHHHH---HhcCCCEEEECCCcccHHHHHHHHC-CCCcEE
Confidence            369999999999999998665 56888776543221   111111   01222   112   13444332211 125789


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~g~~vVigTT  138 (303)
                      ++|++........+......|.=+++|..
T Consensus       232 v~d~vG~~~~~~~~~~l~~~G~iv~~G~~  260 (348)
T PLN03154        232 YFDNVGGDMLDAALLNMKIHGRIAVCGMV  260 (348)
T ss_pred             EEECCCHHHHHHHHHHhccCCEEEEECcc
Confidence            99988655444444444445555556643

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=86.53  E-value=2.4  Score=41.00  Aligned_cols=167  Identities=17%  Similarity=0.127  Sum_probs=100.1

Q ss_pred             CCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh------hcCC-CCCCeeecCCHHHHHhccccC
Q 022057           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV------CDME-QPLEIPVMSDLTMVLGSISQS  104 (303)
Q Consensus        32 ~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~------~g~~-~~~gv~v~~dl~~~l~~~~~~  104 (303)
                      .-|..-+.|.|++|-.|..+++.+.. .+...  ++-    |++...+      +|.. ..+++-+..-+++++      
T Consensus         3 ~e~e~d~iiYGAtGy~G~lvae~l~~-~g~~~--aLA----gRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~------   69 (382)
T COG3268           3 MEREYDIIIYGATGYAGGLVAEYLAR-EGLTA--ALA----GRSSAKLDALRASLGPEAAVFPLGVPAALEAMA------   69 (382)
T ss_pred             CCcceeEEEEccccchhHHHHHHHHH-cCCch--hhc----cCCHHHHHHHHHhcCccccccCCCCHHHHHHHH------
Confidence            34457899999999999999999885 44443  221    2222221      1211 011111122345555      


Q ss_pred             CCccEEEEcCCchhH--HHHHHHHHHcCCCeEEeCCC---CCHHHHHHH-HHHhhhcCCeEEEcCCCc-HHHHH-HHHHH
Q 022057          105 KARAVVIDFTDASTV--YDNVKQATAFGMRSVVYVPH---IQLETVSAL-SAFCDKASMGCLIAPTLS-IGSIL-LQQAA  176 (303)
Q Consensus       105 ~~~DVvIDfT~p~a~--~~~~~~al~~g~~vVigTTG---~~~e~~~~L-~~~a~~~~i~vv~a~N~S-iGv~l-l~~~a  176 (303)
                      ...+||+.+--|-..  ...++.|+.+|.+-.= -||   |- |+.-.+ .+-|++.|+.++-..-|- |-.-+ +..+.
T Consensus        70 ~~~~VVlncvGPyt~~g~plv~aC~~~GTdY~D-iTGEi~~f-e~~i~~yh~~A~~~Ga~Ii~~cGFDsIPsDl~v~~l~  147 (382)
T COG3268          70 SRTQVVLNCVGPYTRYGEPLVAACAAAGTDYAD-ITGEIMFF-ENSIDLYHAQAADAGARIIPGCGFDSIPSDLGVYALL  147 (382)
T ss_pred             hcceEEEeccccccccccHHHHHHHHhCCCeee-ccccHHHH-HHHHHHHHHHHHhcCCEEeccCCCCcCccchHHHHHH
Confidence            478999998877655  7899999999999773 455   22 333333 677888899988777663 22222 23333


Q ss_pred             HHhccCCCcEEEEEccC-CCCCC----CcHHHHHHHHHHHhcC
Q 022057          177 ISASFHYKNVEIVESRP-NARDF----PSPDATQIANNLSNLG  214 (303)
Q Consensus       177 ~~~~~~~~dieIiE~Hh-~K~Da----PSGTA~~l~~~i~~~~  214 (303)
                      +++-+ .+-=|.+..|- -+-+.    --|||....|.++...
T Consensus       148 ~~~~~-d~~~~~~~t~l~l~s~t~~g~S~GTaat~~e~l~~~~  189 (382)
T COG3268         148 KQALP-DGTEELIATHLALGSFTGSGISGGTAATSVEGLATAG  189 (382)
T ss_pred             HhhCc-ccccchhhhheeeeecccCCcccccHHHHHHHHHhcc
Confidence            33322 22335566675 24443    3579999999887743

>PRK08219 short chain dehydrogenase; Provisional

Probab=86.50  E-value=0.97  Score=39.38  Aligned_cols=30  Identities=20%  Similarity=0.247  Sum_probs=25.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~   66 (303)
                      |+++.|.|++|.+|+.+++.+.++  .+++++
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~   32 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT--HTLLLG   32 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh--CCEEEE
Confidence            468999999999999999999865  676654

>PRK07578 short chain dehydrogenase; Provisional

Probab=86.49  E-value=4.2  Score=34.97  Aligned_cols=28  Identities=39%  Similarity=0.581  Sum_probs=23.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAG   65 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg   65 (303)
                      |++.|.|++|.+|+.+++.+.++  .+++.
T Consensus         1 ~~vlItGas~giG~~la~~l~~~--~~vi~   28 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR--HEVIT   28 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc--CcEEE
Confidence            37999999999999999998865  66655

>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit

Probab=86.49  E-value=4.9  Score=39.90  Aligned_cols=121  Identities=10%  Similarity=0.089  Sum_probs=63.2

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec---CCCCcchh-hhhcCCCCCCeeecCCHHHHHhccccCCCccE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS---HSVGEDIG-MVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~---~~~g~d~~-~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (303)
                      ||.||+|+|. |.++..+++++.+ -+++++++...   +..+.... +..-++.....+-|.|.+.+++ +++..++|+
T Consensus         1 ~~kkili~g~-g~~~~~~~~aa~~-lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~-~a~~~~id~   77 (449)
T TIGR00514         1 MLDKILIANR-GEIALRILRACKE-LGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIIS-AAEITGADA   77 (449)
T ss_pred             CcceEEEeCC-CHHHHHHHHHHHH-cCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHH-HHHHhCCCE
Confidence            5679999997 9999999998775 58998876431   11111000 0000000011122445455542 112357888


Q ss_pred             EEEcCC--chhHHHHHHHHHHcCCCeEEeCC--CCC-HHHHHHHHHHhhhcCCeE
Q 022057          110 VIDFTD--ASTVYDNVKQATAFGMRSVVYVP--HIQ-LETVSALSAFCDKASMGC  159 (303)
Q Consensus       110 vIDfT~--p~a~~~~~~~al~~g~~vVigTT--G~~-~e~~~~L~~~a~~~~i~v  159 (303)
                      |+-...  .+. ......+.+.|++++ |.+  ... -.+...+++++++.|+|+
T Consensus        78 I~pg~g~~se~-~~~a~~~e~~Gi~~~-g~~~~~~~~~~DK~~~r~~l~~~gip~  130 (449)
T TIGR00514        78 IHPGYGFLSEN-ANFAEQCERSGFTFI-GPSAESIRLMGDKVSAIETMKKAGVPC  130 (449)
T ss_pred             EEeCCCccccC-HHHHHHHHHCCCcEE-CcCHHHHHHhCCHHHHHHHHHHCCCCC
Confidence            873221  111 224456677888866 321  110 012345677788888875

This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.

>PRK09186 flagellin modification protein A; Provisional

Probab=86.44  E-value=4.3  Score=36.11  Aligned_cols=84  Identities=24%  Similarity=0.266  Sum_probs=48.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE-EEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV-VIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV-vIDfT  114 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.. +++.  ..+.++.           .++.....    ....++ ..|.+
T Consensus         5 k~vlItGas~giG~~~a~~l~~-~g~~v~~~-~r~~--~~~~~~~-----------~~l~~~~~----~~~~~~~~~Dl~   65 (256)
T PRK09186          5 KTILITGAGGLIGSALVKAILE-AGGIVIAA-DIDK--EALNELL-----------ESLGKEFK----SKKLSLVELDIT   65 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEE-ecCh--HHHHHHH-----------HHHHhhcC----CCceeEEEecCC
Confidence            5799999999999999999875 67887764 3321  1111110           00000000    012333 45888


Q ss_pred             CchhHHHHHHHHHH--cCCCeEEeCC
Q 022057          115 DASTVYDNVKQATA--FGMRSVVYVP  138 (303)
Q Consensus       115 ~p~a~~~~~~~al~--~g~~vVigTT  138 (303)
                      .++...+.+..+.+  -++.+|+-..
T Consensus        66 d~~~~~~~~~~~~~~~~~id~vi~~A   91 (256)
T PRK09186         66 DQESLEEFLSKSAEKYGKIDGAVNCA   91 (256)
T ss_pred             CHHHHHHHHHHHHHHcCCccEEEECC
Confidence            88877776665544  2367777554

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=86.25  E-value=7.3  Score=34.06  Aligned_cols=85  Identities=25%  Similarity=0.264  Sum_probs=51.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE-EEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV-VIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV-vIDfT  114 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++....+..  .....               ..+.+..  ....+.+ -.|++
T Consensus         6 ~~vlItG~sg~iG~~l~~~l~~-~G~~v~~~~~~~~--~~~~~---------------~~~~~~~--~~~~~~~~~~Dl~   65 (248)
T PRK05557          6 KVALVTGASRGIGRAIAERLAA-QGANVVINYASSE--AGAEA---------------LVAEIGA--LGGKALAVQGDVS   65 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCch--hHHHH---------------HHHHHHh--cCCceEEEEcCCC
Confidence            5799999999999999999885 4788765543321  00000               0111110  0012222 24888


Q ss_pred             CchhHHHHHHHHHH--cCCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATA--FGMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~--~g~~vVigTTG~  140 (303)
                      .++...+.+....+  .++..|+-..|.
T Consensus        66 ~~~~~~~~~~~~~~~~~~id~vi~~ag~   93 (248)
T PRK05557         66 DAESVERAVDEAKAEFGGVDILVNNAGI   93 (248)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            88888777766554  257788777654

>PRK07806 short chain dehydrogenase; Provisional

Probab=86.24  E-value=7.4  Score=34.42  Aligned_cols=85  Identities=16%  Similarity=0.201  Sum_probs=50.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.++++......  .....+               .+.+..  ...++. +..|.+
T Consensus         7 k~vlItGasggiG~~l~~~l~~-~G~~V~~~~r~~~--~~~~~~---------------~~~l~~--~~~~~~~~~~D~~   66 (248)
T PRK07806          7 KTALVTGSSRGIGADTAKILAG-AGAHVVVNYRQKA--PRANKV---------------VAEIEA--AGGRASAVGADLT   66 (248)
T ss_pred             cEEEEECCCCcHHHHHHHHHHH-CCCEEEEEeCCch--HhHHHH---------------HHHHHh--cCCceEEEEcCCC
Confidence            5799999999999999998875 5788876532211  011110               111110  001122 345788


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.....+....+.  ++++|+-..|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~   94 (248)
T PRK07806         67 DEESVAALMDTAREEFGGLDALVLNASG   94 (248)
T ss_pred             CHHHHHHHHHHHHHhCCCCcEEEECCCC
Confidence            888877766655443  57888766654

>PRK12827 short chain dehydrogenase; Provisional

Probab=86.18  E-value=4.7  Score=35.46  Aligned_cols=89  Identities=13%  Similarity=0.152  Sum_probs=52.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf  113 (303)
                      ++++.|.|++|.+|+.+++.+.+ .+.+++.+.....  .+....            ..+.+.+..  ....+. +..|.
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~-~g~~v~~~~~~~~--~~~~~~------------~~~~~~~~~--~~~~~~~~~~Dl   68 (249)
T PRK12827          6 SRRVLITGGSGGLGRAIAVRLAA-DGADVIVLDIHPM--RGRAEA------------DAVAAGIEA--AGGKALGLAFDV   68 (249)
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCeEEEEcCccc--ccHHHH------------HHHHHHHHh--cCCcEEEEEccC
Confidence            46899999999999999999885 5778766432111  000000            001111110  001222 34578


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      +.++.....+..+.+.  +++.|+-..|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~   97 (249)
T PRK12827         69 RDFAATRAALDAGVEEFGRLDILVNNAGI   97 (249)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            8888887777766554  57888877764

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=86.09  E-value=3.5  Score=43.93  Aligned_cols=34  Identities=15%  Similarity=0.216  Sum_probs=26.8

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      +..-||+|+|+ |-||..|+..+. ..+++++- +|.
T Consensus       333 ~~i~~v~ViGa-G~MG~gIA~~~a-~~G~~V~l-~d~  366 (737)
T TIGR02441       333 RPVKTLAVLGA-GLMGAGIAQVSV-DKGLKTVL-KDA  366 (737)
T ss_pred             CcccEEEEECC-CHhHHHHHHHHH-hCCCcEEE-ecC
Confidence            33458999998 999999999877 45888874 664

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>cd08293 PTGR2 Prostaglandin reductase

Probab=86.00  E-value=2.3  Score=39.88  Aligned_cols=94  Identities=14%  Similarity=0.091  Sum_probs=49.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCe---eec--CCHHHHHhccccCCCccE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEI---PVM--SDLTMVLGSISQSKARAV  109 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~~~~~g~~~~~gv---~v~--~dl~~~l~~~~~~~~~DV  109 (303)
                      -+|.|.|++|.+|+..++.+. ..+. ++++...++.   ....+..   .+|+   ..+  .++.+.+.++. ...+|+
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk-~~G~~~Vi~~~~s~~---~~~~~~~---~lGa~~vi~~~~~~~~~~i~~~~-~~gvd~  227 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGR-LLGCSRVVGICGSDE---KCQLLKS---ELGFDAAINYKTDNVAERLRELC-PEGVDV  227 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HcCCCEEEEEcCCHH---HHHHHHH---hcCCcEEEECCCCCHHHHHHHHC-CCCceE
Confidence            379999999999999998655 5677 6776554321   1111110   1221   111  23333332211 135788


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057          110 VIDFTDASTVYDNVKQATAFGMRSVVYV  137 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~g~~vVigT  137 (303)
                      ++|++......+.+......|.=+.+|.
T Consensus       228 vid~~g~~~~~~~~~~l~~~G~iv~~G~  255 (345)
T cd08293         228 YFDNVGGEISDTVISQMNENSHIILCGQ  255 (345)
T ss_pred             EEECCCcHHHHHHHHHhccCCEEEEEee
Confidence            8887755444444444344455444553

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK00885 phosphoribosylamine--glycine ligase; Provisional

Probab=85.99  E-value=3.1  Score=40.82  Aligned_cols=89  Identities=13%  Similarity=0.184  Sum_probs=47.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      |||.|+|. |.=...+++.+.+.++...+.+ ++...|.   ....   + .+.+ +.|.+++++ +++..++|++|-.+
T Consensus         1 ~kvliiG~-G~~~~~l~~~l~~~~~~~~i~~-~~~n~g~---~~~~---~-~~~~~~~d~~~l~~-~~~~~~id~vi~~~   70 (420)
T PRK00885          1 MKVLVIGS-GGREHALAWKLAQSPLVEKVYV-APGNAGT---ALLA---E-NVVIDVTDIEALVA-FAKEEGIDLTVVGP   70 (420)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEE-eCCCHHH---Hhhc---c-ccCCCCCCHHHHHH-HHHHhCCCEEEECC
Confidence            69999997 7655668888877666544333 4322111   1110   1 1111 245555432 12235789887433


Q ss_pred             CchhHHHHHHHHHHcCCCeE
Q 022057          115 DASTVYDNVKQATAFGMRSV  134 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vV  134 (303)
                      ...........+.+.|++++
T Consensus        71 e~~l~~~~~~~l~~~gi~~~   90 (420)
T PRK00885         71 EAPLVAGIVDAFRAAGLPIF   90 (420)
T ss_pred             chHHHHHHHHHHHHCCCcEE
Confidence            32233445556667888865

>PRK12742 oxidoreductase; Provisional

Probab=85.92  E-value=4.7  Score=35.37  Aligned_cols=30  Identities=30%  Similarity=0.360  Sum_probs=25.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~   66 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus         7 k~vlItGasggIG~~~a~~l~~-~G~~v~~~   36 (237)
T PRK12742          7 KKVLVLGGSRGIGAAIVRRFVT-DGANVRFT   36 (237)
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEe
Confidence            5799999999999999998875 57777654

>PRK07023 short chain dehydrogenase; Provisional

Probab=85.88  E-value=1.1  Score=39.79  Aligned_cols=31  Identities=23%  Similarity=0.498  Sum_probs=26.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~   66 (303)
                      |+++.|.|++|.+|+.+++.+.+ .+.+++.+
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~-~G~~v~~~   31 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQ-PGIAVLGV   31 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHh-CCCEEEEE
Confidence            46999999999999999999875 58887764

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=85.87  E-value=3.5  Score=45.55  Aligned_cols=110  Identities=15%  Similarity=0.154  Sum_probs=61.8

Q ss_pred             eEEEeecCCCCC---ceeEEEEcCCcHHHHHHHHHHHhcCCc-----EEEEEEecC-----C-----------CCcchhh
Q 022057           23 RFISCSTNPPQS---NIKVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDSH-----S-----------VGEDIGM   78 (303)
Q Consensus        23 ~~~~~~~~~~~~---~ikV~V~G~~GrMG~~i~~~i~~~~~~-----eLvg~vd~~-----~-----------~g~d~~~   78 (303)
                      |-+.++....|.   ..||.|+|| |.+|..+++.+. ..|+     --+-++|.+     .           .|+.-.+
T Consensus       404 rqi~l~G~~~Q~kL~~~kVlvvGa-GGlG~e~lknLa-l~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~  481 (1008)
T TIGR01408       404 AQIAVFGDTFQQKLQNLNIFLVGC-GAIGCEMLKNFA-LMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSY  481 (1008)
T ss_pred             HHHHHcCHHHHHHHhhCcEEEECC-ChHHHHHHHHHH-HhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHH
Confidence            334444444443   368999998 999999999887 4555     233456521     0           1211111


Q ss_pred             hh-----cCCCCCCeeec-CCH---------HHHHhccccCCCccEEEEcCC-chhHHHHHHHHHHcCCCeEEeCC-CC
Q 022057           79 VC-----DMEQPLEIPVM-SDL---------TMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP-HI  140 (303)
Q Consensus        79 ~~-----g~~~~~gv~v~-~dl---------~~~l~~~~~~~~~DVvIDfT~-p~a~~~~~~~al~~g~~vVigTT-G~  140 (303)
                      .+     .+.....+..+ ..+         ++.+      .++|+||++.. .++-.-.-..|.++++|+|.+-| |+
T Consensus       482 vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~------~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~  554 (1008)
T TIGR01408       482 TAADATLKINPQIKIDAHQNRVGPETETIFNDEFY------EKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGT  554 (1008)
T ss_pred             HHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHh------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCc
Confidence            11     11112222221 111         2233      37899999874 45545566899999999996644 54

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=85.86  E-value=1.9  Score=38.02  Aligned_cols=30  Identities=23%  Similarity=0.378  Sum_probs=24.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhc-CCcEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAG   65 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg   65 (303)
                      |+|.|.|++|.+|+.+++.+.+. .+..++.
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~   31 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHA   31 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEE
Confidence            48999999999999999999865 3555543

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=85.82  E-value=7.4  Score=34.69  Aligned_cols=100  Identities=12%  Similarity=0.192  Sum_probs=52.6

Q ss_pred             HHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCH---HHHHhccccCCCcc-EEEEcCC---chhHHH
Q 022057           49 RAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL---TMVLGSISQSKARA-VVIDFTD---ASTVYD  121 (303)
Q Consensus        49 ~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl---~~~l~~~~~~~~~D-VvIDfT~---p~a~~~  121 (303)
                      -..++++.+.-++-++|++-...            ...++.++.++   +++.+     ..+| |.+|.|.   |+.+.+
T Consensus        21 ~~dI~aik~~v~lPIIGi~K~~y------------~~~~V~ITPT~~ev~~l~~-----aGadIIAlDaT~R~Rp~~l~~   83 (192)
T PF04131_consen   21 VEDIRAIKKAVDLPIIGIIKRDY------------PDSDVYITPTLKEVDALAE-----AGADIIALDATDRPRPETLEE   83 (192)
T ss_dssp             HHHHHHHHTTB-S-EEEE-B-SB------------TTSS--BS-SHHHHHHHHH-----CT-SEEEEE-SSSS-SS-HHH
T ss_pred             HHHHHHHHHhcCCCEEEEEeccC------------CCCCeEECCCHHHHHHHHH-----cCCCEEEEecCCCCCCcCHHH
Confidence            34566777777888999885432            12345454444   44554     5788 4789883   444443


Q ss_pred             --------------------HHHHHHHcCCCeEEeCC--CCCH------HHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057          122 --------------------NVKQATAFGMRSVVYVP--HIQL------ETVSALSAFCDKASMGCLIAPTLSI  167 (303)
Q Consensus       122 --------------------~~~~al~~g~~vVigTT--G~~~------e~~~~L~~~a~~~~i~vv~a~N~Si  167 (303)
                                          ....|.+.|.++| |||  |+++      .+++.++++++. ++|++.=.++.-
T Consensus        84 li~~i~~~~~l~MADist~ee~~~A~~~G~D~I-~TTLsGYT~~t~~~~pD~~lv~~l~~~-~~pvIaEGri~t  155 (192)
T PF04131_consen   84 LIREIKEKYQLVMADISTLEEAINAAELGFDII-GTTLSGYTPYTKGDGPDFELVRELVQA-DVPVIAEGRIHT  155 (192)
T ss_dssp             HHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEE-E-TTTTSSTTSTTSSHHHHHHHHHHHT-TSEEEEESS--S
T ss_pred             HHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEE-EcccccCCCCCCCCCCCHHHHHHHHhC-CCcEeecCCCCC
Confidence                                4455677777766 666  6542      356777787775 688776555543

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed

Probab=85.78  E-value=1.8  Score=41.07  Aligned_cols=70  Identities=19%  Similarity=0.363  Sum_probs=46.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC--CC--c-----chhhhhcCCCCCCeeecC--CH-----HHHHh
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VG--E-----DIGMVCDMEQPLEIPVMS--DL-----TMVLG   99 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~--~g--~-----d~~~~~g~~~~~gv~v~~--dl-----~~~l~   99 (303)
                      |||+++|. +.++....+.+.+. ++++++++..+.  .+  .     +..+++   .+.++|++.  ++     .+.+.
T Consensus         1 mkIvf~G~-~~~a~~~L~~L~~~-~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a---~~~~Ip~~~~~~~~~~~~~~~l~   75 (309)
T PRK00005          1 MRIVFMGT-PEFAVPSLKALLES-GHEVVAVVTQPDRPAGRGKKLTPSPVKQLA---LEHGIPVLQPEKLRDPEFLAELA   75 (309)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCcEEEEECCCCCCCCCCCCCCCCHHHHHH---HHcCCCEECcCCCCCHHHHHHHH
Confidence            69999996 99999999998864 899999996321  11  1     234444   356777743  21     22333


Q ss_pred             ccccCCCccEEEEcC
Q 022057          100 SISQSKARAVVIDFT  114 (303)
Q Consensus       100 ~~~~~~~~DVvIDfT  114 (303)
                      +    .++|++|-++
T Consensus        76 ~----~~~Dliv~~~   86 (309)
T PRK00005         76 A----LNADVIVVVA   86 (309)
T ss_pred             h----cCcCEEEEeh
Confidence            2    5899888754

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=85.63  E-value=2.5  Score=39.87  Aligned_cols=31  Identities=19%  Similarity=0.264  Sum_probs=24.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      .|||+|+|+ |.||..++-.+.+ .+.+++.+.
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~-~G~~V~lv~   32 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLAR-AGLPVRLIL   32 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHh-CCCCeEEEE
Confidence            579999998 9999999998875 455555433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	303
1c3v_A	245	Dihydrodipicolinate Reductase From Mycobacterium Tu		7e-15
1yl5_A	247	Crystal Structure Of Mycobacterium Tuberculosis Dih		7e-15
1yl6_A	245	Crystal Structure Of Mycobacterium Tuberculosis Dih		8e-15

>pdb|1C3V|A Chain A, Dihydrodipicolinate Reductase From Mycobacterium Tuberculosis Complexed With Nadph And Pdc Length = 245

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 7/183 (3%)
Query: 109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC-DKASMGCLIAPTLSI 167
           VVIDFT    V  N++     G+ +VV       E    + ++   K +   LIAP  +I
Sbjct: 48  VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 107
Query: 168 GSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNL--GQIYNREDIST 224
           G++L    A  A+  + + E++E   P+  D PS  A + A  ++    G   N +  ST
Sbjct: 108 GAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATST 167
Query: 225 DVK-ARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAI 283
            +  ARG  +  DG+ VH++ L GL +   V F   GE  +I+HD  D  S +PG++LA+
Sbjct: 168 SLPGARGADV--DGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAV 225
Query: 284 RKV 286
           R++
Sbjct: 226 RRI 228

>pdb|1YL5|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form A) Length = 247

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 7/183 (3%)
Query: 109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC-DKASMGCLIAPTLSI 167
           VVIDFT    V  N++     G+ +VV       E    + ++   K +   LIAP  +I
Sbjct: 50  VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 109
Query: 168 GSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNL--GQIYNREDIST 224
           G++L    A  A+  + + E++E   P+  D PS  A + A  ++    G   N +  ST
Sbjct: 110 GAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATST 169
Query: 225 DVK-ARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAI 283
            +  ARG  +  DG+ VH++ L GL +   V F   GE  +I+HD  D  S +PG++LA+
Sbjct: 170 SLPGARGADV--DGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAV 227
Query: 284 RKV 286
           R++
Sbjct: 228 RRI 230

>pdb|1YL6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form B) Length = 245

Iteration: 1
 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 7/183 (3%)
Query: 109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC-DKASMGCLIAPTLSI 167
           VVIDFT    V  N++     G+ +VV       E    + ++   K +   LIAP  +I
Sbjct: 48  VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 107
Query: 168 GSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNL--GQIYNREDIST 224
           G++L    A  A+  + + E++E   P+  D PS  A + A  ++    G   N +  ST
Sbjct: 108 GAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATST 167
Query: 225 DVK-ARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAI 283
            +  ARG  +  DG+ VH++ L GL +   V F   GE  +I+HD  D  S +PG++LA+
Sbjct: 168 SLPGARGADV--DGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAV 225
Query: 284 RKV 286
           R++
Sbjct: 226 RRI 228

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	303
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	1e-32
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	6e-11
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	2e-10
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	7e-10
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	1e-05
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	4e-04

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* Length = 245

 Score =  119 bits (302), Expect = 1e-32
 Identities = 67/266 (25%), Positives = 114/266 (42%), Gaps = 45/266 (16%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
           ++V + GA  ++G   V AV  A  + ++  +D    G+ + ++ D          ++  
Sbjct: 1   MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELD---AGDPLSLLTDGN--------TE-- 47

Query: 96  MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVSALSAF 151
                        VVIDFT    V  N++     G+ +VV    +    + + V +    
Sbjct: 48  -------------VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAE-RFQQVESWLV- 92

Query: 152 CDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES-RPNARDFPSPDATQ----I 206
             K +   LIAP  +IG++L    A  A+  + + E++E   P+  D PS  A +    I
Sbjct: 93  -AKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLI 151

Query: 207 ANNLSNLGQ--IYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYS 264
           A     L          +     ARG     DG+ VH++ L GL +   V F   GE  +
Sbjct: 152 AEARKGLPPNPDATSTSL---PGARGAD--VDGIPVHAVRLAGLVAHQEVLFGTEGETLT 206

Query: 265 IKHDITDVQSLMPGLILAIRKVVHLK 290
           I+HD  D  S +PG++LA+R++    
Sbjct: 207 IRHDSLDRTSFVPGVLLAVRRIAERP 232

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* Length = 273

 Score = 60.7 bits (148), Expect = 6e-11
 Identities = 56/268 (20%), Positives = 94/268 (35%), Gaps = 66/268 (24%)

Query: 32  PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEI 88
             +NI+V I GA   +GR  + A     G+++  A++   S  +G D G +        +
Sbjct: 2   HDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGV 60

Query: 89  PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLET 144
            V S L  V           V IDFT      +++      G   V+    +      + 
Sbjct: 61  TVQSSLDAVKDDFD------VFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEA-GKQA 113

Query: 145 VSALSAFCDKASMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVESRPNA-RDFP 199
           +   +     A +  + A   S+G      LL++AA     +  ++EI+E+      D P
Sbjct: 114 IRDAA-----ADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYT-DIEIIEAHHRHKVDAP 167

Query: 200 SPDATQIAN--------NLSNLGQIYNREDISTDVKAR------------GQVLGEDGVR 239
           S  A  +          +L +   +Y+RE        R            G ++GE    
Sbjct: 168 SGTALAMGEAIAHALDKDLKDCA-VYSREGH---TGERVPGTIGFATVRAGDIVGE---- 219

Query: 240 VHSMVLPGLPSSTTVYFSRPGEVYSIKH 267
            H           T  F+  GE   I H
Sbjct: 220 -H-----------TAMFADIGERLEITH 235

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} Length = 272

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 56/266 (21%), Positives = 99/266 (37%), Gaps = 67/266 (25%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
           S++K+ I GA   +GR  + AV  A    + GA+D   S  +G+D G      +   + +
Sbjct: 6   SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLG--KQTGVAL 63

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVS 146
             D+  V            +IDFT       ++  A    ++ V+    +    Q   + 
Sbjct: 64  TDDIERVC------AEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEP-QKAQLR 116

Query: 147 ALSAFCDKASMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVES--RPNARDFPS 200
           A         +  + +  +S+G      LL+ AA   +  Y ++EI+E+  R +  D PS
Sbjct: 117 AAG-----EKIALVFSANMSVGVNVTMKLLEFAAKQFAQGY-DIEIIEAHHR-HKVDAPS 169

Query: 201 PDATQIANNLSN-LGQ------IYNREDISTDVKAR------------GQVLGEDGVRVH 241
             A  +   ++   G+      +Y R  +      R            G ++G+     H
Sbjct: 170 GTALMMGETIAAATGRSLDDCAVYGRHGV---TGERDPSTIGFSAIRGGDIVGD-----H 221

Query: 242 SMVLPGLPSSTTVYFSRPGEVYSIKH 267
                      TV F+  GE   I H
Sbjct: 222 -----------TVLFAGIGERIEITH 236

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} Length = 288

 Score = 57.6 bits (140), Expect = 7e-10
 Identities = 38/267 (14%), Positives = 90/267 (33%), Gaps = 68/267 (25%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
            ++++ + GA   +GR  + A+ + + +E+   +    S  V +D  ++   +  L + +
Sbjct: 20  GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD-FLGVRI 78

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVS 146
             D      +         ++DF+           A    +  ++    +    +   ++
Sbjct: 79  TDDPESAFSNTE------GILDFSQPQASVLYANYAAQKSLIHIIGTTGFSKT-EEAQIA 131

Query: 147 ALSAFCDKASMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVES--RPNARDFPS 200
             +          + +  +S+G    + L+++AA +    + ++EI E     N  D PS
Sbjct: 132 DFA-----KYTTIVKSGNMSLGVNLLANLVKRAAKALDDDF-DIEIYEMHHA-NKVDSPS 184

Query: 201 PDATQIAN--------NLSNLGQIYNREDISTDVKAR------------GQVLGEDGVRV 240
             A  +           L N+  +  R         R            G V+G+     
Sbjct: 185 GTALLLGQAAAEGRNIMLKNVS-VNGRSGH---TGKREKGTIGFACSRGGTVIGD----- 235

Query: 241 HSMVLPGLPSSTTVYFSRPGEVYSIKH 267
           H           ++ F+   E   + H
Sbjct: 236 H-----------SITFAGENERIVLSH 251

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} Length = 243

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 43/266 (16%), Positives = 85/266 (31%), Gaps = 88/266 (33%)

Query: 34  SNIKVIINGAVKEIGR--AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM 91
           +++K+++ G     G     V  + + +G E+ G I++                      
Sbjct: 2   ASMKILLIGY----GAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQ---------- 47

Query: 92  SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI---------QL 142
                    I+  K   V IDF++ + ++  + +           +P +          L
Sbjct: 48  --------HIADVKGADVAIDFSNPNLLFPLLDEDFH--------LPLVVATTGEKEKLL 91

Query: 143 ETVSALSAFCDKASMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVESRPNA-RD 197
             +  LS      +M    +  +S G    + +L  A         ++E+ E+  N   D
Sbjct: 92  NKLDELS-----QNMPVFFSANMSYGVHALTKILAAAV--PLLDDFDIELTEAHHNKKVD 144

Query: 198 FPSPDA----TQIANNLSNLGQIYNREDISTDVKAR------------GQVLGEDGVRVH 241
            PS         I +   N+  +Y+R ++    + R            G ++GE     H
Sbjct: 145 APSGTLEKLYDVIVSLKENVTPVYDRHEL---NEKRQPQDIGIHSIRGGTIVGE-----H 196

Query: 242 SMVLPGLPSSTTVYFSRPGEVYSIKH 267
                       V F+   E   I H
Sbjct: 197 -----------EVLFAGTDETIQITH 211

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 Length = 228

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 47/243 (19%), Positives = 72/243 (29%), Gaps = 71/243 (29%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD 93
            ++K  I G    +G+  +  V   +G E+   +D +  G +     D            
Sbjct: 11  HHMKYGIVGYSGRMGQE-IQKVFSEKGHELVLKVDVN--GVEELDSPD------------ 55

Query: 94  LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVSALS 149
                          VVIDF+    +   V     +    V+          L+ +  LS
Sbjct: 56  ---------------VVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEE-HLQMLRELS 99

Query: 150 AFCDKASMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVESRPNA-RDFPSPDAT 204
                  +  + A   SIG       L +          +VEIVE+     +D PS   T
Sbjct: 100 -----KEVPVVQAYNFSIGINVLKRFLSELV--KVLEDWDVEIVETHHRFKKDAPS--GT 150

Query: 205 QIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYS 264
            I      L     +  +       G V G+     H            V F   GE   
Sbjct: 151 AIL-----LESALGKS-VPIHSLRVGGVPGD-----H-----------VVVFGNIGETIE 188

Query: 265 IKH 267
           IKH
Sbjct: 189 IKH 191

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	303
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	100.0
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	100.0
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	100.0
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	100.0
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	100.0
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	100.0
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	99.82
4had_A	350	Probable oxidoreductase protein; structural genomi	99.69
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	99.67
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	99.67
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.66
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	99.66
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	99.66
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.65
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	99.64
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	99.64
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	99.64
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	99.64
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	99.63
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	99.63
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	99.63
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	99.63
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	99.63
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	99.63
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	99.63
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	99.63
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	99.62
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	99.62
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	99.62
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	99.62
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	99.62
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	99.62
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	99.61
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	99.61
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	99.6
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	99.6
1ydw_A	362	AX110P-like protein; structural genomics, protein	99.59
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	99.59
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	99.59
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	99.58
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	99.58
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	99.58
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	99.57
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	99.57
4h3v_A	390	Oxidoreductase domain protein; structural genomics	99.56
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	99.55
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	99.55
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	99.55
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	99.55
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	99.55
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	99.54
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	99.54
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.54
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	99.53
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	99.53
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	99.52
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	99.52
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	99.51
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	99.5
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	99.49
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	99.49
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.48
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	99.4
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	99.39
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	99.38
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	99.37
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	99.33
3mwd_B	334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	99.31
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	99.22
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	99.14
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	99.11
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	99.03
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.92
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	98.91
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	98.84
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.84
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.81
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	98.8
2g0t_A	350	Conserved hypothetical protein; structural genomic	98.78
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.7
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.69
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	98.67
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.66
2obn_A	349	Hypothetical protein; structural genomics, joint c	98.63
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	98.62
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	98.62
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	98.58
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	98.56
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.55
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	98.54
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	98.53
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	98.52
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	98.5
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	98.47
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	98.44
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	98.42
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	98.4
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.36
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.31
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.31
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.29
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	98.28
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.26
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	98.26
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	98.24
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	98.23
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.22
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.22
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.21
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.21
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.2
2csu_A	457	457AA long hypothetical protein; structural genomi	98.19
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	98.18
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	98.17
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	98.16
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.15
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	98.14
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	98.14
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.13
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.13
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	98.11
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.11
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	98.09
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	98.08
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.08
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	98.07
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	98.07
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.06
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.05
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.03
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	98.03
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	98.02
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	98.01
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	98.0
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	98.0
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	97.99
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	97.99
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.98
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	97.97
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.97
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.97
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	97.96
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.96
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.94
1gr0_A	367	Inositol-3-phosphate synthase; isomerase, oxidored	97.91
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	97.9
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	97.85
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.84
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	97.83
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.82
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	97.81
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.8
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	97.8
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	97.79
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.77
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.77
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.75
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.74
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.74
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.74
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.73
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.69
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	97.69
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	97.65
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.61
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.6
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.6
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	97.57
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.54
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.54
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	97.54
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.51
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	97.48
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	97.47
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	97.47
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	97.46
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.44
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	97.42
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.38
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	97.37
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.37
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.37
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.37
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	97.36
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.35
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	97.35
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.33
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.31
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.3
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.3
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	97.26
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.24
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.24
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.2
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.19
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	97.19
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	97.18
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.18
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.17
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.15
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.14
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.13
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	97.13
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	97.12
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.09
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	97.08
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.08
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.07
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.05
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	97.02
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.01
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.99
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.98
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.94
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.93
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.93
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.92
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.92
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.88
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.86
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.86
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	96.85
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.79
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	96.77
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	96.73
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	96.72
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.72
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.67
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.64
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	96.62
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.61
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.61
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.6
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.56
3cin_A	394	MYO-inositol-1-phosphate synthase-related protein;	96.53
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.53
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.48
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.46
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.45
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.44
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	96.43
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.35
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.33
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.33
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.3
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.28
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.27
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	96.25
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.24
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	96.24
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.23
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.21
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.19
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	96.19
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.18
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.17
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.17
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.13
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.11
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.09
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	96.08
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.06
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	96.06
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	96.05
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.04
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.02
1vjp_A	394	MYO-inositol-1-phosphate synthase-related protein;	96.01
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	96.0
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.96
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	95.96
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	95.95
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.95
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.93
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	95.91
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.9
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.86
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	95.86
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	95.85
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.85
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.82
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	95.81
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	95.81
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	95.8
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.79
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	95.78
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	95.76
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.75
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	95.75
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.74
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.71
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	95.65
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	95.62
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	95.61
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.6
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	95.6
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	95.59
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.58
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.55
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.54
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	95.54
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	95.53
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.53
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	95.52
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	95.49
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.48
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	95.45
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	95.33
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.33
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	95.33
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	95.31
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.29
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.28
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.25
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.22
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	95.21
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	95.21
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	95.18
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	95.18
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	95.16
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.14
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.12
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.11
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	95.07
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.02
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.02
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	94.99
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.97
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	94.96
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	94.95
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	94.92
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	94.9
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	94.89
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	94.85
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	94.76
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	94.76
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	94.75
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	94.74
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	94.74
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	94.74
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	94.73
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	94.72
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	94.7
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.63
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	94.63
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	94.63
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	94.63
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.61
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	94.6
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	94.6
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	94.59
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.57
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	94.47
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	94.47
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	94.45
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	94.44
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	94.39
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	94.37
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	94.34
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	94.33
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	94.33
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	94.33
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	94.31
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.28
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	94.16
3au8_A	488	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	94.16
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.15
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	94.14
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	94.13
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	94.1
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	94.09
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	94.07
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	94.07
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	94.06
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	94.04
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	94.04
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	94.01
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	93.99
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	93.95
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	93.91
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	93.88
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	93.88
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	93.85
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	93.8
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	93.8
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	93.78
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	93.75
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	93.74
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.67
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	93.67
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	93.66
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	93.65
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	93.64
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	93.53
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.5
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	93.49
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	93.49
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	93.43
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	93.43
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	93.43
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	93.42
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	93.4
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	93.38
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	93.37
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	93.36
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	93.36
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	93.36
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	93.28
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	93.22
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	93.18
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	93.15
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	93.15
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.15
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	93.15
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	93.1
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	93.07
4f6c_A	427	AUSA reductase domain protein; thioester reductase	93.03
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	93.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	92.99
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	92.99
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	92.96
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	92.87
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	92.77
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	92.68
2qk4_A	452	Trifunctional purine biosynthetic protein adenosi;	92.66
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	92.64
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	92.63
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	92.54
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	92.5
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	92.37
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	92.35
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	92.33
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	92.33
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	92.32
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	92.32
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	92.27
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	92.16
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	92.14
4f6l_B	508	AUSA reductase domain protein; thioester reductase	92.11
4eye_A	342	Probable oxidoreductase; structural genomics, niai	92.09
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	92.07
4dqx_A	277	Probable oxidoreductase protein; structural genomi	91.99
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	91.98
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	91.82
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	91.76
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	91.7
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	91.68
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	91.61
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	91.61
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	91.6
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	91.59
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.55
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	91.52
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	91.51
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	91.5
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	91.48
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	91.47
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	91.45
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	91.45
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	91.45
2y1e_A	398	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	91.44
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	91.43
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	91.43
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	91.42
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	91.36
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.31
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	91.24
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	91.14
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	91.14
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.07
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	91.05
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	91.03
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	91.02
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	90.98
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	90.97
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	90.97
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	90.93
4e4y_A	244	Short chain dehydrogenase family protein; structur	90.92
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	90.92
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	90.9
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	90.88
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	90.87
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	90.86
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	90.86
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	90.77
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	90.76
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	90.76
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	90.75
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	90.73
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.71
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	90.71
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	90.7
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	90.68
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	90.67
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	90.64
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	90.61
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	90.6
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	90.55
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	90.55
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	90.55
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	90.53

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=100.00  E-value=1.7e-74  Score=538.02  Aligned_cols=252  Identities=13%  Similarity=0.169  Sum_probs=229.8

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (303)
                      +|+||+|+||+|+||+.+++.+.++|+++|+|++|++   ..|+|+++++|++ +.|+++++|+++++      .++||+
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~-~~gv~v~~dl~~ll------~~aDVv   92 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD-FLGVRITDDPESAF------SNTEGI   92 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCS-CCSCBCBSCHHHHT------TSCSEE
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccC-cCCceeeCCHHHHh------cCCCEE
Confidence            3699999998899999999999999999999999964   3689999999884 78999999999998      479999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCC---CcEE
Q 022057          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY---KNVE  187 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~---~die  187 (303)
                      ||||+|+++.++++.|+++|+|+|+|||||++++.++|+++|++  +|++||||||+|+|||++|++.+++++   ||+|
T Consensus        93 IDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~L~~aa~~--~~~~~a~N~SiGv~ll~~l~~~aa~~l~~~~die  170 (288)
T 3ijp_A           93 LDFSQPQASVLYANYAAQKSLIHIIGTTGFSKTEEAQIADFAKY--TTIVKSGNMSLGVNLLANLVKRAAKALDDDFDIE  170 (288)
T ss_dssp             EECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHHTT--SEEEECSCCCHHHHHHHHHHHHHHHHSCTTSEEE
T ss_pred             EEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhCc--CCEEEECCCcHHHHHHHHHHHHHHHhcCCCCCEE
Confidence            99999999999999999999999999999999999999999988  999999999999999999998888754   7999


Q ss_pred             EEEccC-CCCCCCcHHHHHHHHHHHhcC-------cccccCcccccccccCccccCCceeEEEEEcCCCceeEEEEEccC
Q 022057          188 IVESRP-NARDFPSPDATQIANNLSNLG-------QIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRP  259 (303)
Q Consensus       188 IiE~Hh-~K~DaPSGTA~~l~~~i~~~~-------~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg~H~V~f~~~  259 (303)
                      |+|+|| +|+|||||||++|++.|++.+       .+|+|++..+   .|.    +++|+|||+|+|++||+|+|+|+++
T Consensus       171 IiE~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~r~g~~g---~r~----~~~i~i~s~R~g~ivg~h~V~f~~~  243 (288)
T 3ijp_A          171 IYEMHHANKVDSPSGTALLLGQAAAEGRNIMLKNVSVNGRSGHTG---KRE----KGTIGFACSRGGTVIGDHSITFAGE  243 (288)
T ss_dssp             EEEEECTTCCCSSCHHHHHHHHHHHHHTTSCHHHHEEECGGGCCS---CCC----TTCEEEEEEECTTCCEEEEEEEEET
T ss_pred             EEEccCCCCCCCCCHHHHHHHHHHHHHhCCCcccccccccccccC---CcC----CCCccEEEEECCCCCEEEEEEecCC
Confidence            999999 699999999999999997732       2466766543   443    3799999999999999999999999


Q ss_pred             CeEEEEEEecCCccccHHHHHHHHHHhhcCCCceEEeeEEee
Q 022057          260 GEVYSIKHDITDVQSLMPGLILAIRKVVHLKVTNHIIFQTVC  301 (303)
Q Consensus       260 ~E~iel~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~~~~~~~~~  301 (303)
                      +|+|||+|+|+||++||+||++||+||.+|+||+|.+.|++-
T Consensus       244 ~e~i~i~H~a~sR~~Fa~Ga~~Aa~~l~~~~~g~y~m~dvL~  285 (288)
T 3ijp_A          244 NERIVLSHIAQERSIFANGALKAALWAKNHENGLYSMLDVLG  285 (288)
T ss_dssp             TEEEEEEEEECCTHHHHHHHHHHHHHHTTCCSEEECHHHHHC
T ss_pred             CcEEEEEEEeCcHHHHHHHHHHHHHHHhcCCCcEEeHHHHhC
Confidence            999999999999999999999999999999999999998753

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=100.00  E-value=4.6e-74  Score=532.08  Aligned_cols=253  Identities=20%  Similarity=0.285  Sum_probs=228.7

Q ss_pred             CCCC-ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCC
Q 022057           31 PPQS-NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (303)
Q Consensus        31 ~~~~-~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (303)
                      |..| ||||+|+||+|+||+.+++.+.++++++|++++|++   ..|+|+++++|.. . ++++++|++++++      +
T Consensus         2 ~~~M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~-~-gv~v~~dl~~ll~------~   73 (272)
T 4f3y_A            2 PGSMSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQ-T-GVALTDDIERVCA------E   73 (272)
T ss_dssp             ----CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCC-C-SCBCBCCHHHHHH------H
T ss_pred             CCCccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCC-C-CceecCCHHHHhc------C
Confidence            4555 699999998899999999999999999999999964   3688999998864 3 9999999999985      6


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCC---
Q 022057          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY---  183 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~---  183 (303)
                      +|||||||+|+++.++++.|+++|+|+|+|||||++++.++|+++|++  +|+++|||||+|+|||++|++.+++++   
T Consensus        74 ~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s~~~~~~L~~aa~~--~~vv~a~N~s~Gv~l~~~~~~~aa~~l~~~  151 (272)
T 4f3y_A           74 ADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGEK--IALVFSANMSVGVNVTMKLLEFAAKQFAQG  151 (272)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHTTT--SEEEECSCCCHHHHHHHHHHHHHHHHTSSS
T ss_pred             CCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcc--CCEEEECCCCHHHHHHHHHHHHHHHhcCcC
Confidence            999999999999999999999999999999999999999999999988  899999999999999999998888754   


Q ss_pred             CcEEEEEccC-CCCCCCcHHHHHHHHHHHhcC-------cccccCcccccccccCccccCCceeEEEEEcCCCceeEEEE
Q 022057          184 KNVEIVESRP-NARDFPSPDATQIANNLSNLG-------QIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVY  255 (303)
Q Consensus       184 ~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~-------~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg~H~V~  255 (303)
                      ||+||+|+|| +|+|||||||++|++.|++.+       .+|+|++.++   .|+    +++|+|||+|+|+++|+|||+
T Consensus       152 ~diei~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~r~g~~g---~r~----~~~i~i~s~R~g~ivg~h~v~  224 (272)
T 4f3y_A          152 YDIEIIEAHHRHKVDAPSGTALMMGETIAAATGRSLDDCAVYGRHGVTG---ERD----PSTIGFSAIRGGDIVGDHTVL  224 (272)
T ss_dssp             CEEEEEEEECTTCCSSSCHHHHHHHHHHHHTTTCCHHHHEEECCCSCCC---SCC----TTCEEEEEEECTTCCEEEEEE
T ss_pred             CCEEEEEecCCCCCCCCCHHHHHHHHHHHHHhCcccccccccccccccC---CCC----CCccCEEEEECCCCceEEEEE
Confidence            7999999999 699999999999999998732       2467776554   454    389999999999999999999


Q ss_pred             EccCCeEEEEEEecCCccccHHHHHHHHHHhhcCCCceEEeeEEe
Q 022057          256 FSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKVTNHIIFQTV  300 (303)
Q Consensus       256 f~~~~E~iel~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~~~~~~~~  300 (303)
                      |++++|+|||+|+|+||++||+||++||+||.+++||+|.+.|++
T Consensus       225 f~~~~e~i~i~H~a~~R~~fa~Ga~~Aa~~~~~~~~g~y~m~dvl  269 (272)
T 4f3y_A          225 FAGIGERIEITHKSASRVSYAQGALRAARFLAGRDAGFFDMQDVL  269 (272)
T ss_dssp             EECSSEEEEEEEEECCTHHHHHHHHHHHHHHHTCSSEEECHHHHT
T ss_pred             EcCCCcEEEEEEEeCcHHHHHHHHHHHHHHHhcCCCcEEcHHHHh
Confidence            999999999999999999999999999999999999999999875

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=100.00  E-value=1.1e-71  Score=508.41  Aligned_cols=234  Identities=17%  Similarity=0.253  Sum_probs=211.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ||||+|+|| |+||+.+++.+.+.++ +|++++|++..           ...++++++|+++++       ++||+||||
T Consensus         3 MmkI~ViGa-GrMG~~i~~~l~~~~~-eLva~~d~~~~-----------~~~gv~v~~dl~~l~-------~~DVvIDft   62 (243)
T 3qy9_A            3 SMKILLIGY-GAMNQRVARLAEEKGH-EIVGVIENTPK-----------ATTPYQQYQHIADVK-------GADVAIDFS   62 (243)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEECSSCC-------------CCSCBCSCTTTCT-------TCSEEEECS
T ss_pred             ceEEEEECc-CHHHHHHHHHHHhCCC-EEEEEEecCcc-----------ccCCCceeCCHHHHh-------CCCEEEEeC
Confidence            689999999 9999999999999999 99999997531           146789999998874       589999999


Q ss_pred             CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCC--CcEEEEEcc
Q 022057          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEIVESR  192 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~--~dieIiE~H  192 (303)
                      +|+++.++++  +++|+|+|+|||||++++.++|+++|++  +|+++|||||+|+|||++|++.+++++  ||+||+|+|
T Consensus        63 ~p~a~~~~~~--l~~g~~vVigTTG~s~e~~~~l~~aa~~--~~v~~a~N~S~Gv~l~~~~~~~aa~~l~~~dieI~E~H  138 (243)
T 3qy9_A           63 NPNLLFPLLD--EDFHLPLVVATTGEKEKLLNKLDELSQN--MPVFFSANMSYGVHALTKILAAAVPLLDDFDIELTEAH  138 (243)
T ss_dssp             CHHHHHHHHT--SCCCCCEEECCCSSHHHHHHHHHHHTTT--SEEEECSSCCHHHHHHHHHHHHHHHHTTTSEEEEEEEE
T ss_pred             ChHHHHHHHH--HhcCCceEeCCCCCCHHHHHHHHHHHhc--CCEEEECCccHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            9999999998  9999999999999999999999999998  999999999999999999999999877  899999999


Q ss_pred             C-CCCCCCcHHHHHHHHHHHhcC----cccccCcccccccccCccccCCceeEEEEEcCCCceeEEEEEccCCeEEEEEE
Q 022057          193 P-NARDFPSPDATQIANNLSNLG----QIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKH  267 (303)
Q Consensus       193 h-~K~DaPSGTA~~l~~~i~~~~----~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg~H~V~f~~~~E~iel~H  267 (303)
                      | +|+|||||||++|++.|...+    ..|+|++..+   .|.    +++|+|||+|+|++||+|||+|+|++|+|||+|
T Consensus       139 H~~K~DaPSGTA~~la~~i~~~~~~~~~~~~r~~~~~---~r~----~~~i~i~s~R~g~ivg~h~v~f~~~~e~i~i~H  211 (243)
T 3qy9_A          139 HNKKVDAPSGTLEKLYDVIVSLKENVTPVYDRHELNE---KRQ----PQDIGIHSIRGGTIVGEHEVLFAGTDETIQITH  211 (243)
T ss_dssp             CTTCCSSSCHHHHHHHHHHHHHSTTCEEECCCTTTCC---CCC----TTEEEEEEEECTTCCEEEEEEEEETTEEEEEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHhcCcccccccccccccC---Ccc----CCcceEEEEECCCCcEEEEEEEcCCCcEEEEEE
Confidence            9 699999999999999993333    2466665432   442    379999999999999999999999999999999


Q ss_pred             ecCCccccHHHHHHHHHHhhcCCCceEEeeEE
Q 022057          268 DITDVQSLMPGLILAIRKVVHLKVTNHIIFQT  299 (303)
Q Consensus       268 ~a~sR~~Fa~Gal~Aa~~l~~~~~g~~~~~~~  299 (303)
                      +|+||++||+||++||+||.+++||+|.+.|+
T Consensus       212 ~a~sR~~Fa~Ga~~Aa~~l~~~~~g~y~m~dv  243 (243)
T 3qy9_A          212 RAQSKDIFANGAIQAAERLVNKPNGFYTFDNL  243 (243)
T ss_dssp             EESCTHHHHHHHHHHHHHHTTSCSEEECTTTC
T ss_pred             EeCcHHHHHHHHHHHHHHHccCCCcEeccccC
Confidence            99999999999999999999999999999874

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=100.00  E-value=3.3e-69  Score=499.88  Aligned_cols=250  Identities=19%  Similarity=0.262  Sum_probs=225.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC---CCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      +|||+|+||+|+||+.+++.+.+.++++|++++|++.   .|+++++++|+. +.++++++|++++++      ++||||
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~-~~~v~~~~dl~~~l~------~~DvVI   77 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGVTVQSSLDAVKD------DFDVFI   77 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSS-CCSCCEESCSTTTTT------SCSEEE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCC-cCCceecCCHHHHhc------CCCEEE
Confidence            5899999999999999999999899999999999643   377888888763 678999999998883      799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCC---CcEEE
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY---KNVEI  188 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~---~dieI  188 (303)
                      |||+|+++.+++..|+++|+|+|+|||||++++.++|.+++++  ++++++||||+|+|+|+++++.+++++   ||+||
T Consensus        78 Dft~p~~~~~~~~~a~~~G~~vVigTtG~~~e~~~~L~~~a~~--~~vv~a~N~siGvn~~~~l~~~aa~~~~~~~diei  155 (273)
T 1dih_A           78 DFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAAD--IAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEI  155 (273)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHTTT--SCEEECSCCCHHHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred             EcCChHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHhcCC--CCEEEEecCcHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence            9999999999999999999999999999999999999999987  899999999999999999988887754   89999


Q ss_pred             EEccC-CCCCCCcHHHHHHHHHHHhcC-------cccccCcccccccccCccccCCceeEEEEEcCCCceeEEEEEccCC
Q 022057          189 VESRP-NARDFPSPDATQIANNLSNLG-------QIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPG  260 (303)
Q Consensus       189 iE~Hh-~K~DaPSGTA~~l~~~i~~~~-------~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg~H~V~f~~~~  260 (303)
                      +|+|| +|+|||||||++++|.|++..       ..++|++..+   .|.    +++|+|||+|+|+++|+|+|+|++++
T Consensus       156 iE~Hh~~K~DaPSGTA~~~ae~i~~~~~~~~~~~~~~~r~~~~~---~r~----~~~i~i~s~R~g~vvg~h~v~f~~~g  228 (273)
T 1dih_A          156 IEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTG---ERV----PGTIGFATVRAGDIVGEHTAMFADIG  228 (273)
T ss_dssp             EEEECTTCCSSSCHHHHHHHHHHHHHTTCCGGGTEECCCCSCCC---SCC----TTCEEEEEEECTTCCEEEEEEEEETT
T ss_pred             EEeecCCCCCCCCHHHHHHHHHHHHhhCCCccccccccccCccC---CCC----CCcceEEEEeCCCCCccEEEEEcCCC
Confidence            99999 699999999999999997632       2455665543   442    37899999999999999999999999


Q ss_pred             eEEEEEEecCCccccHHHHHHHHHHhhcCCCceEEeeEEe
Q 022057          261 EVYSIKHDITDVQSLMPGLILAIRKVVHLKVTNHIIFQTV  300 (303)
Q Consensus       261 E~iel~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~~~~~~~~  300 (303)
                      |+|||+|+|+||++||+||++||+||.+|+||+|.|.|++
T Consensus       229 e~i~i~H~a~~R~~fa~Ga~~Aa~~l~~~~~g~y~m~dvl  268 (273)
T 1dih_A          229 ERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVL  268 (273)
T ss_dssp             EEEEEEEEECSTHHHHHHHHHHHHHHTTCCSSEECHHHHT
T ss_pred             cEEEEEEEeCCHHHHHHHHHHHHHHHhcCCCCEEcHHHhh
Confidence            9999999999999999999999999999999999998864

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=100.00  E-value=4.8e-68  Score=485.06  Aligned_cols=233  Identities=27%  Similarity=0.412  Sum_probs=207.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |||+|+||+|+||+.+++.+.+.++++|++++|+.                     +|+++++.     .++||+||||+
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------------~dl~~~~~-----~~~DvvIDfT~   54 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------------DPLSLLTD-----GNTEVVIDFTH   54 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------------CCTHHHHH-----TTCCEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------------CCHHHHhc-----cCCcEEEEccC
Confidence            59999999999999999999888999999999863                     23456654     37999999999


Q ss_pred             chhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhc-CCeEEEcCCCcHHHHHHHHHHHHhccCCCcEEEEEccC-
Q 022057          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA-SMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRP-  193 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~-~i~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~Hh-  193 (303)
                      |+++.+++..|+++|+|+|+|||||++++.++|+++|+++ ++|++++||||+|+|+|++|++.++++++|+||+|+|| 
T Consensus        55 p~a~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N~siGv~ll~~l~~~aa~~~~dieIiE~HH~  134 (245)
T 1p9l_A           55 PDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHP  134 (245)
T ss_dssp             TTTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCCCHHHHHHHHHHHHHGGGCSEEEEEEEECT
T ss_pred             hHHHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECCccHHHHHHHHHHHHHHhhcCCEEEEECccc
Confidence            9999999999999999999999999999999999999976 89999999999999999999999999889999999999 


Q ss_pred             CCCCCCcHHHHHHHHHHHhcCc------ccccCcccccccccCccccCCceeEEEEEcCCCceeEEEEEccCCeEEEEEE
Q 022057          194 NARDFPSPDATQIANNLSNLGQ------IYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKH  267 (303)
Q Consensus       194 ~K~DaPSGTA~~l~~~i~~~~~------~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg~H~V~f~~~~E~iel~H  267 (303)
                      +|+|||||||++|+|.|++.+.      .+.|++.+   +.|+..  .++|+|||+|+|++||+|+|+|++++|+|||+|
T Consensus       135 ~K~DaPSGTA~~lae~i~~~~~~~~~~~~~~~~~~~---g~r~~~--~~~i~i~s~R~g~ivg~h~V~f~~~~e~i~i~H  209 (245)
T 1p9l_A          135 HKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLP---GARGAD--VDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRH  209 (245)
T ss_dssp             TCCSSSCHHHHHHHHHHHHHTTTSCCCCCCCCSCCT---TTTCEE--ETTEEEEEEECTTCCEEEEEEEEETTEEEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHhhccccccccccccccc---CCCCCC--CCcceEEEEECCCCCeEEEEEEcCCCcEEEEEE
Confidence            6999999999999999987432      22333333   245432  268999999999999999999999999999999


Q ss_pred             ecCCccccHHHHHHHHHHhhcCCCc-eEEeeEEe
Q 022057          268 DITDVQSLMPGLILAIRKVVHLKVT-NHIIFQTV  300 (303)
Q Consensus       268 ~a~sR~~Fa~Gal~Aa~~l~~~~~g-~~~~~~~~  300 (303)
                      +|+||++||+||++||+||. ++|| +|.|.|++
T Consensus       210 ~a~sR~~Fa~Ga~~Aa~~l~-~~~Gl~y~m~dvl  242 (245)
T 1p9l_A          210 DSLDRTSFVPGVLLAVRRIA-ERPGLTVGLEPLL  242 (245)
T ss_dssp             EECSGGGGHHHHHHHHHHGG-GSCEEEESSHHHH
T ss_pred             EeCchhhhHHHHHHHHHHHh-cCCCCEEcHHHhh
Confidence            99999999999999999999 6799 59998864

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=100.00  E-value=1.1e-68  Score=480.94  Aligned_cols=210  Identities=22%  Similarity=0.268  Sum_probs=193.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -||.+|+|++|||||.+++.+ +.++++|++++|++.   +                    +.+      .++||+||||
T Consensus        12 ~~~~~v~Ga~GrMG~~i~~~~-~~~~~elv~~id~~~---~--------------------~~l------~~~DVvIDFT   61 (228)
T 1vm6_A           12 HMKYGIVGYSGRMGQEIQKVF-SEKGHELVLKVDVNG---V--------------------EEL------DSPDVVIDFS   61 (228)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEETTE---E--------------------EEC------SCCSEEEECS
T ss_pred             cceeEEEEecCHHHHHHHHHH-hCCCCEEEEEEcCCC---c--------------------ccc------cCCCEEEECC
Confidence            379999999999999998854 689999999998641   0                    011      2589999999


Q ss_pred             CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCC--CcEEEEEcc
Q 022057          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEIVESR  192 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~--~dieIiE~H  192 (303)
                      +|+++.+++++|+++|+|+|+|||||++++.+.|++++++  +|+++|||||+|+|||+++++.+++++  ||+||+|+|
T Consensus        62 ~P~a~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~--~~vv~apNfSlGvnll~~l~~~aA~~l~~ydiEIiE~H  139 (228)
T 1vm6_A           62 SPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKE--VPVVQAYNFSIGINVLKRFLSELVKVLEDWDVEIVETH  139 (228)
T ss_dssp             CGGGHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHTTT--SEEEECSCCCHHHHHHHHHHHHHHHHTTTSEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHHhh--CCEEEeccccHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            9999999999999999999999999999999999999887  999999999999999999999888864  799999999


Q ss_pred             C-CCCCCCcHHHHHHHHHHHhcCcccccCcccccccccCccccCCceeEEEEEcCCCceeEEEEEccCCeEEEEEEecCC
Q 022057          193 P-NARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITD  271 (303)
Q Consensus       193 h-~K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg~H~V~f~~~~E~iel~H~a~s  271 (303)
                      | +|+|||||||++|+|.|.                        ++|+|||+|+|++||+|||+|++++|+|||+|+|+|
T Consensus       140 H~~K~DAPSGTAl~lae~i~------------------------~~I~i~svR~g~ivg~H~V~F~~~gE~iei~H~a~s  195 (228)
T 1vm6_A          140 HRFKKDAPSGTAILLESALG------------------------KSVPIHSLRVGGVPGDHVVVFGNIGETIEIKHRAIS  195 (228)
T ss_dssp             CTTCCCSSCHHHHHHHHHTT------------------------SCCCEEEEECTTCCCEEEEEEECSSEEEEEEEEECC
T ss_pred             CCCCCCCCCHHHHHHHHhcc------------------------cCCCEEEEECCCCcEEEEEEEeCCCcEEEEEEEeCc
Confidence            9 699999999999999871                        578999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHhhcCCCceEEeeEEe
Q 022057          272 VQSLMPGLILAIRKVVHLKVTNHIIFQTV  300 (303)
Q Consensus       272 R~~Fa~Gal~Aa~~l~~~~~g~~~~~~~~  300 (303)
                      |++||+||++||+||.+|+||+|.+.|++
T Consensus       196 R~~Fa~Gal~Aa~~l~~~~~G~Y~m~dvL  224 (228)
T 1vm6_A          196 RTVFAIGALKAAEFLVGKDPGMYSFEEVI  224 (228)
T ss_dssp             THHHHHHHHHHHHHHTTCCSEEECHHHHH
T ss_pred             HHHhHhHHHHHHHHHhcCCCCEecHHHHh
Confidence            99999999999999999999999998864

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=99.82  E-value=1.3e-21  Score=184.09  Aligned_cols=247  Identities=11%  Similarity=0.018  Sum_probs=164.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ++||+|+|+ |+||+.+++.+.+.++++|++++|++...    .+     .+++++++|+++++      .++|+||++|
T Consensus         3 ~irV~IiG~-G~mG~~~~~~l~~~~~~elvav~d~~~~~----~~-----~~gv~~~~d~~~ll------~~~DvViiat   66 (320)
T 1f06_A            3 NIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATL----DT-----KTPVFDVADVDKHA------DDVDVLFLCM   66 (320)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCC----SS-----SSCEEEGGGGGGTT------TTCSEEEECS
T ss_pred             CCEEEEEee-cHHHHHHHHHHhcCCCCEEEEEEcCCHHH----hh-----cCCCceeCCHHHHh------cCCCEEEEcC
Confidence            689999998 99999999999988999999999975311    11     15678889998876      3799999999


Q ss_pred             CchhHHHHHHHHHHcCCCeEEeCC-CCCHHHH-HHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhcc-CC----CcEE
Q 022057          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETV-SALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF-HY----KNVE  187 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~-~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~-~~----~die  187 (303)
                      +|..+.+++..++++|+++|++|| +.+.++. ++|.+++++++.-.++..||+.|...+.++...... ..    +..+
T Consensus        67 p~~~h~~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~~v~v~~~~~~p~~~~l~~~l~~~~~~~g~~~~~~~~  146 (320)
T 1f06_A           67 GSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGWDPGMFSINRVYAAAVLAEHQQHTFWGP  146 (320)
T ss_dssp             CTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCEEECSCSBTTBHHHHHHHHHHHHCSSEEEEEEECS
T ss_pred             CcHHHHHHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCCCEEEEecCChHHHHHHHHHHhhccccccceecccCC
Confidence            999999999999999999999998 5677777 899999998875555556999999877777654221 11    1235


Q ss_pred             EEEccC-CCCCCCcHHHHHHH------HHHHhc---Cccc-c-c--CcccccccccCccccCCceeEEEEEcCCCc----
Q 022057          188 IVESRP-NARDFPSPDATQIA------NNLSNL---GQIY-N-R--EDISTDVKARGQVLGEDGVRVHSMVLPGLP----  249 (303)
Q Consensus       188 IiE~Hh-~K~DaPSGTA~~l~------~~i~~~---~~~~-~-r--~~~~~~~~~rg~~~~~~~i~ihS~R~g~iv----  249 (303)
                      ..|.|| .+.++++|++-.++      +.+...   ..+. . +  .........+|.++  ..|..|+.|.++.+    
T Consensus       147 ~~~~~~~~~~~~~~gi~~a~g~~i~~e~~ld~v~~~~~p~~~~~d~~~~~~~~~~eG~d~--~~i~~~~~~~~~~~a~yd  224 (320)
T 1f06_A          147 GLSQGHSDALRRIPGVQKAVQYTLPSEDALEKARRGEAGDLTGKQTHKRQCFVVADAADH--ERIENDIRTMPDYFVGYE  224 (320)
T ss_dssp             EECHHHHHHHHTSTTCSEEEEEEEECHHHHHHHHHTCCTTCCHHHHEEEEEEEECCGGGH--HHHHHHHHTCTTTTTTSE
T ss_pred             CcccccccchhhcCchhhhhhcccCchHHHHHHhccCCCccchhhhhhceEEEEeCCcCh--HHHHHHHHhcccccCCCc
Confidence            677887 58888888532111      111111   0000 0 0  00000000112212  33444444444322    


Q ss_pred             --------------------eeEEEEE---ccCCeEEEEEEecCCcc-ccHHHHHHHHHH----hhcCCCceEEeeEE
Q 022057          250 --------------------SSTTVYF---SRPGEVYSIKHDITDVQ-SLMPGLILAIRK----VVHLKVTNHIIFQT  299 (303)
Q Consensus       250 --------------------g~H~V~f---~~~~E~iel~H~a~sR~-~Fa~Gal~Aa~~----l~~~~~g~~~~~~~  299 (303)
                                          |.|-+..   +.+.++++++.+..+.- .-|.=++.|+++    +..-+||+|++||+
T Consensus       225 ~~v~~~~~~~l~~~~~~~~~g~~v~~~~~~g~~~~~~~~~~~~~~~~~~ta~~~v~~~~~~~~~~~~~~~G~~t~~d~  302 (320)
T 1f06_A          225 VEVNFIDEATFDSEHTGMPHGGHVITTGDTGGFNHTVEYILKLDRNPDFTASSQIAFGRAAHRMKQQGQSGAFTVLEV  302 (320)
T ss_dssp             EEEEECCHHHHHHHSSCCCEEEEEEEEEESSSCEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCEEECGGGS
T ss_pred             eEEEEEchHHhhhhhcCCCCCcEEEEeecCCCCceeEEEEecCCCCcchhhHHHHHHHHHHHHHHhcCCCCCcccccC
Confidence                                3453333   33444588887765433 334456778888    88999999999996

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=99.69  E-value=4.6e-17  Score=153.27  Aligned_cols=147  Identities=17%  Similarity=0.103  Sum_probs=118.0

Q ss_pred             CCceeEEEEcCCcHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-ecCCHHHHHhccccCCCccEE
Q 022057           33 QSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVv  110 (303)
                      |+||||||+|+ |+||+. ++..+...|+++|++++|++.  ..+.+++   ++++++ +|+|+++++++    .++|+|
T Consensus        21 ~~mirigiIG~-G~ig~~~~~~~~~~~~~~~lvav~d~~~--~~a~~~a---~~~g~~~~y~d~~ell~~----~~iDaV   90 (350)
T 4had_A           21 QSMLRFGIIST-AKIGRDNVVPAIQDAENCVVTAIASRDL--TRAREMA---DRFSVPHAFGSYEEMLAS----DVIDAV   90 (350)
T ss_dssp             -CCEEEEEESC-CHHHHHTHHHHHHHCSSEEEEEEECSSH--HHHHHHH---HHHTCSEEESSHHHHHHC----SSCSEE
T ss_pred             cCccEEEEEcC-hHHHHHHHHHHHHhCCCeEEEEEECCCH--HHHHHHH---HHcCCCeeeCCHHHHhcC----CCCCEE
Confidence            56899999998 999986 578888899999999999753  3334444   356774 79999999975    689999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC--cHHHHHHHHHHHHhccCCCcEE
Q 022057          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVE  187 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~--SiGv~ll~~~a~~~~~~~~die  187 (303)
                      +.+|++..+.+.+..|+++||||+|++| +.+.++.++|.++|+++++.+.+.-|+  ...+..++++.+.  +..-++.
T Consensus        91 ~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~~i~~--G~iG~i~  168 (350)
T 4had_A           91 YIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAYMITYSPVWQKVRSLIDE--GAIGSLR  168 (350)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHT--TTTSSEE
T ss_pred             EEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCceeEeeeeecCHHHHHhhHhhhc--CCCCcce
Confidence            9999999999999999999999999999 899999999999999999998888774  4555555555532  2233555


Q ss_pred             EEEc
Q 022057          188 IVES  191 (303)
Q Consensus       188 IiE~  191 (303)
                      -++.
T Consensus       169 ~i~~  172 (350)
T 4had_A          169 HVQG  172 (350)
T ss_dssp             EEEE
T ss_pred             eeeE
Confidence            5554

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=99.67  E-value=2.7e-16  Score=148.79  Aligned_cols=145  Identities=9%  Similarity=0.004  Sum_probs=114.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHh-------cCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eecCCHHHHHhccccCCC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTK-------ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKA  106 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~-------~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~  106 (303)
                      ++||||+|+ |+||+.+++.+..       .++++|++++|++.  ..+.+++   +++++ .+|+|++++|++    .+
T Consensus        25 kirvgiIG~-G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~--~~a~~~a---~~~g~~~~y~d~~ell~~----~~   94 (393)
T 4fb5_A           25 PLGIGLIGT-GYMGKCHALAWNAVKTVFGDVERPRLVHLAEANA--GLAEARA---GEFGFEKATADWRALIAD----PE   94 (393)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC----TTHHHHH---HHHTCSEEESCHHHHHHC----TT
T ss_pred             CccEEEEcC-CHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCH--HHHHHHH---HHhCCCeecCCHHHHhcC----CC
Confidence            499999998 9999999887654       36889999999753  3334444   35676 479999999975    68


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC--cHHHHHHHHHHHHhccCC
Q 022057          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHY  183 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~--SiGv~ll~~~a~~~~~~~  183 (303)
                      +|+|+.+|++..+.+.+..|+++||||+|++| +.+.+|.++|.++|+++|+.+.+.-|+  ...+.-++++.+.  +..
T Consensus        95 iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~vg~~~R~~p~~~~~k~~i~~--G~i  172 (393)
T 4fb5_A           95 VDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATAERSGKVAALGYNYIQNPVMRHIRKLVGD--GVI  172 (393)
T ss_dssp             CCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCEEECCGGGGCHHHHHHHHHHHT--TTT
T ss_pred             CcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHhcCCccccccccccChHHHHHHHHHHc--CCC
Confidence            99999999999999999999999999999999 899999999999999999999888775  4444444554432  234


Q ss_pred             CcEEEEEc
Q 022057          184 KNVEIVES  191 (303)
Q Consensus       184 ~dieIiE~  191 (303)
                      -++..++.
T Consensus       173 G~i~~v~~  180 (393)
T 4fb5_A          173 GRVNHVRV  180 (393)
T ss_dssp             CSEEEEEE
T ss_pred             ccccceee
Confidence            45555553

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=99.67  E-value=5.4e-16  Score=147.24  Aligned_cols=162  Identities=17%  Similarity=0.084  Sum_probs=118.1

Q ss_pred             eecccccccccceEEEeecCCCCC-ceeEEEEcCCcHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCC-
Q 022057           11 RMHHISQNVKAKRFISCSTNPPQS-NIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-   87 (303)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~-~ikV~V~G~~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g-   87 (303)
                      .-||.++|.+         ++.+| ++||+|+|+ |+||+.+++.+. ..++++|++++|++.  ..+..++   +.++ 
T Consensus         7 ~~~~~~~~~~---------~~~~m~~~rvgiIG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~a---~~~g~   71 (357)
T 3ec7_A            7 HHHHSSGREN---------LYFQGMTLKAGIVGI-GMIGSDHLRRLANTVSGVEVVAVCDIVA--GRAQAAL---DKYAI   71 (357)
T ss_dssp             ------------------------CCEEEEEECC-SHHHHHHHHHHHHTCTTEEEEEEECSST--THHHHHH---HHHTC
T ss_pred             cccccCCccc---------cccCCCeeeEEEECC-cHHHHHHHHHHHhhCCCcEEEEEEeCCH--HHHHHHH---HHhCC
Confidence            3456666643         45565 589999998 999999999998 679999999999753  2333333   2345 


Q ss_pred             -eeecCCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeE-EEcCC
Q 022057           88 -IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGC-LIAPT  164 (303)
Q Consensus        88 -v~v~~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~v-v~a~N  164 (303)
                       ++.|+|+++++++    .++|+|+.+|++..+.+.+..|+++|+||+|++| +.+.++.++|.++++++|+.+ .++-|
T Consensus        72 ~~~~~~~~~~ll~~----~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~~v~~~  147 (357)
T 3ec7_A           72 EAKDYNDYHDLIND----KDVEVVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRMVQIGFM  147 (357)
T ss_dssp             CCEEESSHHHHHHC----TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCCEEEECG
T ss_pred             CCeeeCCHHHHhcC----CCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeEEEEeec
Confidence             6789999999974    5799999999999999999999999999999999 899999999999999999876 56555


Q ss_pred             --CcHHHHHHHHHHHHhccCCCcEEEEEccC
Q 022057          165 --LSIGSILLQQAAISASFHYKNVEIVESRP  193 (303)
Q Consensus       165 --~SiGv~ll~~~a~~~~~~~~dieIiE~Hh  193 (303)
                        |...+..++++.+.  +..-++..+...+
T Consensus       148 ~R~~p~~~~~k~~i~~--g~iG~i~~v~~~~  176 (357)
T 3ec7_A          148 RRYDKGYVQLKNIIDS--GEIGQPLMVHGRH  176 (357)
T ss_dssp             GGGSHHHHHHHHHHHH--TTTCSEEEEEEEE
T ss_pred             ccCCHHHHHHHHHHhc--CCCCCeEEEEEEE
Confidence              56666666666543  2344666566533

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=99.66  E-value=9.2e-16  Score=144.98  Aligned_cols=148  Identities=20%  Similarity=0.164  Sum_probs=120.1

Q ss_pred             CceeEEEEcCCcHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ||+||+|+|+ |+||+ .++..+.+.++++|++++|++ ..+...+..+   ..++++|+|+++++++    .++|+|+.
T Consensus         1 M~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~a~~~~---~~~~~~~~~~~~ll~~----~~~D~V~i   71 (349)
T 3i23_A            1 MTVKMGFIGF-GKSANRYHLPYVMIRETLEVKTIFDLH-VNEKAAAPFK---EKGVNFTADLNELLTD----PEIELITI   71 (349)
T ss_dssp             CCEEEEEECC-SHHHHHTTHHHHTTCTTEEEEEEECTT-CCHHHHHHHH---TTTCEEESCTHHHHSC----TTCCEEEE
T ss_pred             CeeEEEEEcc-CHHHHHHHHHHHhhCCCeEEEEEECCC-HHHHHHHhhC---CCCCeEECCHHHHhcC----CCCCEEEE
Confidence            7899999998 99999 699988888999999999976 2333322221   1467899999999974    57999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHHHHhccCCCcEEEE
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a~~~~~~~~dieIi  189 (303)
                      +|++..+.+.+..|+++|+||+|++| +.+.++.++|.++|+++|+.+.++.|  |.....-++++.+.  ...-++.-+
T Consensus        72 ~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~~  149 (349)
T 3i23_A           72 CTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVMPYQNRRFDGDYLAMKQVVEQ--GFLGEINEV  149 (349)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHH--TTTCSEEEE
T ss_pred             eCCcHHHHHHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhc--CCCCCEEEE
Confidence            99999999999999999999999999 89999999999999999999998888  45566556665542  234466666


Q ss_pred             Ecc
Q 022057          190 ESR  192 (303)
Q Consensus       190 E~H  192 (303)
                      +.+
T Consensus       150 ~~~  152 (349)
T 3i23_A          150 ETH  152 (349)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=99.66  E-value=4e-16  Score=147.77  Aligned_cols=151  Identities=12%  Similarity=0.024  Sum_probs=118.1

Q ss_pred             cCCCCC-ceeEEEEcCCcHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCC
Q 022057           29 TNPPQS-NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (303)
Q Consensus        29 ~~~~~~-~ikV~V~G~~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (303)
                      .+|..| ++||+|+|+ |+||+ .+++.+.+.++++|++++|++.  ..+..++   +.++++.++|+++++++    .+
T Consensus        20 ~~~~~m~~~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~g~~~~~~~~~ll~~----~~   89 (350)
T 3rc1_A           20 ENPANANPIRVGVIGC-ADIAWRRALPALEAEPLTEVTAIASRRW--DRAKRFT---ERFGGEPVEGYPALLER----DD   89 (350)
T ss_dssp             ------CCEEEEEESC-CHHHHHTHHHHHHHCTTEEEEEEEESSH--HHHHHHH---HHHCSEEEESHHHHHTC----TT
T ss_pred             CCCCCCCceEEEEEcC-cHHHHHHHHHHHHhCCCeEEEEEEcCCH--HHHHHHH---HHcCCCCcCCHHHHhcC----CC
Confidence            344444 589999998 99999 7999999999999999999752  2333343   35688889999999964    57


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHHHHhccCC
Q 022057          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHY  183 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a~~~~~~~  183 (303)
                      +|+|+.+|++..+.+.+..|+++|++|+|++| +.+.++.++|.++++++|+.++.+.|  |...+..++++.+.  +..
T Consensus        90 ~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--G~i  167 (350)
T 3rc1_A           90 VDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHRQVADMLDE--GVI  167 (350)
T ss_dssp             CSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCTHHHHHHHHHHT--TTT
T ss_pred             CCEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCHHHHHHHHHHhc--CCC
Confidence            99999999999999999999999999999999 89999999999999999998887765  45666666666542  223


Q ss_pred             CcEEEEEc
Q 022057          184 KNVEIVES  191 (303)
Q Consensus       184 ~dieIiE~  191 (303)
                      -++..++.
T Consensus       168 G~i~~v~~  175 (350)
T 3rc1_A          168 GEIRSFAA  175 (350)
T ss_dssp             CSEEEEEE
T ss_pred             CCeEEEEE
Confidence            45555554

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=99.66  E-value=1.2e-15  Score=142.75  Aligned_cols=146  Identities=14%  Similarity=0.137  Sum_probs=118.3

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      ||+||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+..++   ..++++ ++|+++++++    .++|+|+.+
T Consensus         2 m~~~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~---~~~~~~-~~~~~~~l~~----~~~D~V~i~   70 (331)
T 4hkt_A            2 MTVRFGLLGA-GRIGKVHAKAVSGNADARLVAVADAFP--AAAEAIA---GAYGCE-VRTIDAIEAA----ADIDAVVIC   70 (331)
T ss_dssp             -CEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHH---HHTTCE-ECCHHHHHHC----TTCCEEEEC
T ss_pred             CceEEEEECC-CHHHHHHHHHHhhCCCcEEEEEECCCH--HHHHHHH---HHhCCC-cCCHHHHhcC----CCCCEEEEe
Confidence            6899999998 999999999999889999999999753  2233343   356788 9999999974    589999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHHHHhccCCCcEEEEE
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIVE  190 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a~~~~~~~~dieIiE  190 (303)
                      |++..+.+.+..|+++|++|++++| +.+.++.++|.++++++|+.++...|  |...+..++++.+.  +..-++..++
T Consensus        71 tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~~~  148 (331)
T 4hkt_A           71 TPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGFNRRFDPHFMAVRKAIDD--GRIGEVEMVT  148 (331)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHT--TTTCSEEEEE
T ss_pred             CCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEcccccCCHHHHHHHHHHHc--CCCCceEEEE
Confidence            9999999999999999999999999 89999999999999999999888777  45555555555532  2334565555


Q ss_pred             cc
Q 022057          191 SR  192 (303)
Q Consensus       191 ~H  192 (303)
                      .+
T Consensus       149 ~~  150 (331)
T 4hkt_A          149 IT  150 (331)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=99.65  E-value=2.8e-15  Score=140.39  Aligned_cols=145  Identities=15%  Similarity=0.130  Sum_probs=117.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-ecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |+||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+..++   .+++++ +|+|+++++++    .++|+|+.+
T Consensus         5 ~~rigiiG~-G~ig~~~~~~l~~~~~~~~~av~d~~~--~~~~~~a---~~~~~~~~~~~~~~ll~~----~~~D~V~i~   74 (329)
T 3evn_A            5 KVRYGVVST-AKVAPRFIEGVRLAGNGEVVAVSSRTL--ESAQAFA---NKYHLPKAYDKLEDMLAD----ESIDVIYVA   74 (329)
T ss_dssp             CEEEEEEBC-CTTHHHHHHHHHHHCSEEEEEEECSCS--STTCC------CCCCSCEESCHHHHHTC----TTCCEEEEC
T ss_pred             ceEEEEEec-hHHHHHHHHHHHhCCCcEEEEEEcCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEEEC
Confidence            589999998 999999999999889999999999753  2223333   356776 89999999964    579999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC--cHHHHHHHHHHHHhccCCCcEEEEE
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEIVE  190 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~--SiGv~ll~~~a~~~~~~~~dieIiE  190 (303)
                      |++..+.+.+..|+++|+||+|++| +.+.++.++|.++++++|+.++.+.|+  ...+..++++.+.  +..-++..++
T Consensus        75 tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~v~  152 (329)
T 3evn_A           75 TINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLAS--GEIGEVISIS  152 (329)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECSSCSSHHHHHHHHHHHT--TTTCSEEEEE
T ss_pred             CCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEEEcccCCHHHHHHHHHHhC--CCCCCeEEEE
Confidence            9999999999999999999999999 899999999999999999999988775  6666666666542  2234555555


Q ss_pred             c
Q 022057          191 S  191 (303)
Q Consensus       191 ~  191 (303)
                      .
T Consensus       153 ~  153 (329)
T 3evn_A          153 S  153 (329)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=99.64  E-value=2.6e-15  Score=141.41  Aligned_cols=148  Identities=14%  Similarity=0.111  Sum_probs=118.0

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeecCCHHHHHhccccCCCccEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVv  110 (303)
                      ||+||+|+|+ |.||+.+++.+. ..++++|++++|++.  ..+..++   +.++  +++++|+++++++    .++|+|
T Consensus         1 M~~rigiIG~-G~~g~~~~~~l~~~~~~~~l~av~d~~~--~~~~~~~---~~~g~~~~~~~~~~~ll~~----~~~D~V   70 (344)
T 3mz0_A            1 MSLRIGVIGT-GAIGKEHINRITNKLSGAEIVAVTDVNQ--EAAQKVV---EQYQLNATVYPNDDSLLAD----ENVDAV   70 (344)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHTCSSEEEEEEECSSH--HHHHHHH---HHTTCCCEEESSHHHHHHC----TTCCEE
T ss_pred             CeEEEEEECc-cHHHHHHHHHHHhhCCCcEEEEEEcCCH--HHHHHHH---HHhCCCCeeeCCHHHHhcC----CCCCEE
Confidence            6899999998 999999999998 779999999999752  2223333   2455  6789999999974    579999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeE-EEcCC--CcHHHHHHHHHHHHhccCCCcE
Q 022057          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGC-LIAPT--LSIGSILLQQAAISASFHYKNV  186 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~v-v~a~N--~SiGv~ll~~~a~~~~~~~~di  186 (303)
                      +.+|++..+.+.+..|+++|+||+|++| +.+.++.++|.++++++|+.+ .++.|  |...+..++++.+.  +..-++
T Consensus        71 ~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i  148 (344)
T 3mz0_A           71 LVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDSGYVQLKEALDN--HVIGEP  148 (344)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGGGSHHHHHHHHHHHT--TTTSSE
T ss_pred             EECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEEEEEecccccCHHHHHHHHHHHc--CCCCCc
Confidence            9999999999999999999999999999 899999999999999999877 55555  45555555555532  234466


Q ss_pred             EEEEccC
Q 022057          187 EIVESRP  193 (303)
Q Consensus       187 eIiE~Hh  193 (303)
                      ..++..+
T Consensus       149 ~~v~~~~  155 (344)
T 3mz0_A          149 LMIHCAH  155 (344)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            6666543

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=99.64  E-value=1.6e-15  Score=142.64  Aligned_cols=126  Identities=14%  Similarity=0.150  Sum_probs=108.3

Q ss_pred             ceeEEEEcCCcHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |+||+|+|+ |+||+ .+++.+.+.++++|++++|++.            +..++++|+|+++++++   ..++|+|+.+
T Consensus        25 ~~rvgiiG~-G~ig~~~~~~~l~~~~~~~lvav~d~~~------------~~~g~~~~~~~~~ll~~---~~~vD~V~i~   88 (330)
T 4ew6_A           25 PINLAIVGV-GKIVRDQHLPSIAKNANFKLVATASRHG------------TVEGVNSYTTIEAMLDA---EPSIDAVSLC   88 (330)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHHHHCTTEEEEEEECSSC------------CCTTSEEESSHHHHHHH---CTTCCEEEEC
T ss_pred             CceEEEEec-CHHHHHHHHHHHHhCCCeEEEEEEeCCh------------hhcCCCccCCHHHHHhC---CCCCCEEEEe
Confidence            589999998 99999 7999999999999999999753            24578899999999962   1469999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCcH--HHHHHHHHH
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI--GSILLQQAA  176 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~Si--Gv~ll~~~a  176 (303)
                      |++..+.+.+..|+++||||+|++| +.+.++.++|.++|+++|+.++.+.|+-.  .+..++++.
T Consensus        89 tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i  154 (330)
T 4ew6_A           89 MPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANKQGASLFASWHSRYAPAVEAAKAFL  154 (330)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSTTHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEEehhhccHHHHHHHHHH
Confidence            9999999999999999999999999 89999999999999999999988776543  333445444

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=99.64  E-value=1.4e-15  Score=141.35  Aligned_cols=119  Identities=16%  Similarity=0.193  Sum_probs=102.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .+||+|+|++|+||+.+++.+.+. ++++++.+++...|.         ...|+++|.|++++.++    .++|++|+|+
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~-g~~~v~~VnP~~~g~---------~i~G~~vy~sl~el~~~----~~~Dv~Ii~v   72 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGKGGM---------EVLGVPVYDTVKEAVAH----HEVDASIIFV   72 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTC---------EETTEEEESSHHHHHHH----SCCSEEEECC
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHc-CCeEEEEECCCCCCc---------eECCEEeeCCHHHHhhc----CCCCEEEEec
Confidence            479999999999999999988865 899988888753221         13589999999999752    3799999999


Q ss_pred             CchhHHHHHHHHHHcCCC-eEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          115 DASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~-vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      +|+.+.+.++.|+++|++ +|+.|+|++.++.++|.+++++.++. ++.|| ++|+
T Consensus        73 p~~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~-vigPN-c~Gi  126 (288)
T 1oi7_A           73 PAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSR-LIGGN-CPGI  126 (288)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE-EEESS-SCEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEeCC-CCeE
Confidence            999999999999999999 78889999998889999999998885 78899 7776

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=99.64  E-value=4.4e-15  Score=140.34  Aligned_cols=145  Identities=23%  Similarity=0.233  Sum_probs=117.8

Q ss_pred             CceeEEEEcCCcHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      +|+||+|+|+ |+||+. +++.+.+.++++|++++|++.  ..+..     ...++++|+|+++++++    .++|+|+.
T Consensus         6 ~~~rvgiiG~-G~~g~~~~~~~~~~~~~~~l~av~d~~~--~~~~~-----~~~~~~~~~~~~~ll~~----~~vD~V~i   73 (352)
T 3kux_A            6 DKIKVGLLGY-GYASKTFHAPLIMGTPGLELAGVSSSDA--SKVHA-----DWPAIPVVSDPQMLFND----PSIDLIVI   73 (352)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHHHTSTTEEEEEEECSCH--HHHHT-----TCSSCCEESCHHHHHHC----SSCCEEEE
T ss_pred             CCceEEEECC-CHHHHHHHHHHHhhCCCcEEEEEECCCH--HHHHh-----hCCCCceECCHHHHhcC----CCCCEEEE
Confidence            4699999998 999997 999999899999999999752  11111     23467889999999974    67999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHHHHhccCCCcEEEE
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a~~~~~~~~dieIi  189 (303)
                      +|++..+.+.+..|+++|+||+|++| +.+.++.++|.++|+++|+.+.+..|  |.....-++++.+.  +..-++.-+
T Consensus        74 ~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~~  151 (352)
T 3kux_A           74 PTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLAE--GSLGNVVYF  151 (352)
T ss_dssp             CSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHH--TTTCSEEEE
T ss_pred             eCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEeecccCHHHHHHHHHHhc--CCCCceEEE
Confidence            99999999999999999999999999 89999999999999999999888877  45666556665543  234456556


Q ss_pred             Ecc
Q 022057          190 ESR  192 (303)
Q Consensus       190 E~H  192 (303)
                      +.+
T Consensus       152 ~~~  154 (352)
T 3kux_A          152 ESH  154 (352)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=99.63  E-value=2.3e-15  Score=141.23  Aligned_cols=147  Identities=10%  Similarity=-0.018  Sum_probs=117.6

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCe-eecCCHHHHHhccccCCCccEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVv  110 (303)
                      ||+||+|+|+ |+||+.+++.+...+  +++|++++|++.  ..+.+++   +.+++ .+|+|+++++++    .++|+|
T Consensus         1 M~~rigiiG~-G~ig~~~~~~l~~~~~~~~~l~av~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~~----~~vD~V   70 (334)
T 3ohs_X            1 MALRWGIVSV-GLISSDFTAVLQTLPRSEHQVVAVAARDL--SRAKEFA---QKHDIPKAYGSYEELAKD----PNVEVA   70 (334)
T ss_dssp             -CEEEEEECC-SHHHHHHHHHHTTSCTTTEEEEEEECSSH--HHHHHHH---HHHTCSCEESSHHHHHHC----TTCCEE
T ss_pred             CccEEEEECc-hHHHHHHHHHHHhCCCCCeEEEEEEcCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEE
Confidence            6899999998 999999999998766  479999999752  2333333   24666 479999999974    689999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC--cHHHHHHHHHHHHhccCCCcEE
Q 022057          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVE  187 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~--SiGv~ll~~~a~~~~~~~~die  187 (303)
                      +.+|++..+.+.+..|+++|+||+|++| +.+.++.++|.++|+++|+.++.+.|+  ...+.-++++.+.  +..-++.
T Consensus        71 ~i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~  148 (334)
T 3ohs_X           71 YVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLMEAIWTRFFPASEALRSVLAQ--GTLGDLR  148 (334)
T ss_dssp             EECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHHH--TTTCSEE
T ss_pred             EECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhcCHHHHHHHHHHhc--CCCCCeE
Confidence            9999999999999999999999999999 899999999999999999998887764  5555555665542  2334666


Q ss_pred             EEEcc
Q 022057          188 IVESR  192 (303)
Q Consensus       188 IiE~H  192 (303)
                      .++.+
T Consensus       149 ~v~~~  153 (334)
T 3ohs_X          149 VARAE  153 (334)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66654

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=99.63  E-value=3.4e-15  Score=141.70  Aligned_cols=143  Identities=13%  Similarity=0.075  Sum_probs=117.8

Q ss_pred             ceeEEEEcCCcHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-CeeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      |+||+|+|+ |+||+. ++..+.+.++++|++++|++.  ..+   .   ..+ ++++|+|+++++++    .++|+|+.
T Consensus         5 ~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~---~---~~~~~~~~~~~~~~ll~~----~~vD~V~i   71 (362)
T 3fhl_A            5 IIKTGLAAF-GMSGQVFHAPFISTNPHFELYKIVERSK--ELS---K---ERYPQASIVRSFKELTED----PEIDLIVV   71 (362)
T ss_dssp             CEEEEESCC-SHHHHHTTHHHHHHCTTEEEEEEECSSC--CGG---G---TTCTTSEEESCSHHHHTC----TTCCEEEE
T ss_pred             ceEEEEECC-CHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHH---H---HhCCCCceECCHHHHhcC----CCCCEEEE
Confidence            589999998 999997 899898899999999999753  111   1   244 67899999999974    57999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHHHHhccCCCcEEEE
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a~~~~~~~~dieIi  189 (303)
                      +|++..+.+.+..|+++|+||+|++| +.+.++.++|.++|+++|+.+.+..|  |...+.-++++.+.  +..-++.-+
T Consensus        72 ~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--G~iG~i~~v  149 (362)
T 3fhl_A           72 NTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLSVYQNRRWDADFLTVRDILAK--SLLGRLVEY  149 (362)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHHT--TTTSSEEEE
T ss_pred             eCChHHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEEecceeCHHHHHHHHHHHc--CCCCCeEEE
Confidence            99999999999999999999999999 89999999999999999999998888  56666666666542  223455555


Q ss_pred             Ecc
Q 022057          190 ESR  192 (303)
Q Consensus       190 E~H  192 (303)
                      +.+
T Consensus       150 ~~~  152 (362)
T 3fhl_A          150 EST  152 (362)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=99.63  E-value=4.4e-15  Score=141.07  Aligned_cols=145  Identities=16%  Similarity=0.173  Sum_probs=118.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ++||+|+|+ |+||+.+++.+.+.++++|++++|++.  .. .+.+   ..+++++|+|+++++++    .++|+|+.+|
T Consensus         5 ~~~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~-~~~a---~~~g~~~~~~~~~ll~~----~~~D~V~i~t   73 (359)
T 3e18_A            5 KYQLVIVGY-GGMGSYHVTLASAADNLEVHGVFDILA--EK-REAA---AQKGLKIYESYEAVLAD----EKVDAVLIAT   73 (359)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSTTEEEEEEECSSH--HH-HHHH---HTTTCCBCSCHHHHHHC----TTCCEEEECS
T ss_pred             cCcEEEECc-CHHHHHHHHHHHhCCCcEEEEEEcCCH--HH-HHHH---HhcCCceeCCHHHHhcC----CCCCEEEEcC
Confidence            589999998 999999999999999999999999752  11 2223   35788999999999974    6899999999


Q ss_pred             CchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC--cHHHHHHHHHHHHhccCCCcEEEEEc
Q 022057          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEIVES  191 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~--SiGv~ll~~~a~~~~~~~~dieIiE~  191 (303)
                      ++..+.+.+..|+++|+||+|++| +.+.++.++|.++|+++|+.+.+..|+  ...+..++++.+.  +..-++..++.
T Consensus        74 p~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~~~~~  151 (359)
T 3e18_A           74 PNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMFEQ--KTIGEMFHLES  151 (359)
T ss_dssp             CGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHH--TTTSSEEEEEE
T ss_pred             CcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEEEeeeccCHHHHHHHHHHHc--CCCCCeEEEEE
Confidence            999999999999999999999999 899999999999999999998887774  4555555555542  23445555555


Q ss_pred             c
Q 022057          192 R  192 (303)
Q Consensus       192 H  192 (303)
                      +
T Consensus       152 ~  152 (359)
T 3e18_A          152 R  152 (359)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=99.63  E-value=1.2e-14  Score=130.23  Aligned_cols=215  Identities=13%  Similarity=0.108  Sum_probs=146.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |||+|+|+ |+||+.+++.+. .++++|++++|++.   ..       ..    .++|++++++     .++|+||++++
T Consensus         1 m~vgiIG~-G~mG~~~~~~l~-~~g~~lv~v~d~~~---~~-------~~----~~~~~~~l~~-----~~~DvVv~~~~   59 (236)
T 2dc1_A            1 MLVGLIGY-GAIGKFLAEWLE-RNGFEIAAILDVRG---EH-------EK----MVRGIDEFLQ-----REMDVAVEAAS   59 (236)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEEEEECSSC---CC-------TT----EESSHHHHTT-----SCCSEEEECSC
T ss_pred             CEEEEECC-CHHHHHHHHHHh-cCCCEEEEEEecCc---ch-------hh----hcCCHHHHhc-----CCCCEEEECCC
Confidence            58999998 999999999888 68999999998752   11       11    5788999884     37999999999


Q ss_pred             chhHHHHHHHHHHcCCCeEEeCCCC-CHHHH-HHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcEEEEEccC
Q 022057          116 ASTVYDNVKQATAFGMRSVVYVPHI-QLETV-SALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRP  193 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~vVigTTG~-~~e~~-~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~Hh  193 (303)
                      ++.+.+++..++++|+++|+++|+. +.++. ++|.++++++|+.+++.+|++.|+..+....  +  ....+.+.+.||
T Consensus        60 ~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~~~~~~~--~--~~~~~~~~~~~~  135 (236)
T 2dc1_A           60 QQAVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFSAS--E--LIEEIVLTTRKN  135 (236)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHHHHHTG--G--GEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChHHHHHhh--c--cccEEEEEEEcC
Confidence            9999999999999999999999975 33444 7899999999999999999999986654221  2  233455555566


Q ss_pred             -CCCCCC----cHHHHHHHHHHHhcCcccccCcccccccccCccccCCceeEEEEEcCCCceeEEEEEccCCeEEEEEEe
Q 022057          194 -NARDFP----SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHD  268 (303)
Q Consensus       194 -~K~DaP----SGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg~H~V~f~~~~E~iel~H~  268 (303)
                       .+.+.|    +|++...++.+.......   ......+.     +...+.+.+- ... .-.|++...|+...++++-+
T Consensus       136 ~~~~~~~~~~~~G~~~~~~~~~~~~~n~~---~~~~~a~~-----~~~~~~l~~~-~~~-~~~~~i~v~G~~g~~~~~~~  205 (236)
T 2dc1_A          136 WRQFGRKGVIFEGSASEAAQKFPKNLNVA---ATLSIASG-----KDVKVRLVAD-EVE-ENIHEILVRGEFGEMEIRVR  205 (236)
T ss_dssp             GGGTTSCEEEEEEEHHHHHHHSTTCCHHH---HHHHHHHS-----SCCEEEEEEE-SCS-SEEEEEEEEETTEEEEEEEE
T ss_pred             hHHcCcceEEEeccHHHHHHHCCchHHHH---HHHHHhcc-----CceEEEEEEc-CCC-CcEEEEEEEecCeEEEEEEe
Confidence             677777    677653332211100000   00000000     0134556666 433 45899999999999888654


Q ss_pred             cCC-----ccccHHHHHHHHHHh
Q 022057          269 ITD-----VQSLMPGLILAIRKV  286 (303)
Q Consensus       269 a~s-----R~~Fa~Gal~Aa~~l  286 (303)
                      -..     +++ ...++.+++-|
T Consensus       206 ~~p~~~~~~t~-~~~~~s~~~~~  227 (236)
T 2dc1_A          206 NRPMRENPKTS-YLAALSVTRIL  227 (236)
T ss_dssp             ECEETTEEEEE-HHHHHHHHHHH
T ss_pred             CCcCCCCCcch-HHHHHHHHHHH
Confidence            333     233 34455444444

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=99.63  E-value=3.6e-15  Score=139.91  Aligned_cols=145  Identities=14%  Similarity=0.091  Sum_probs=117.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |+||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+..++   ..+++ .+|+|+++++++    .++|+|+.+
T Consensus         5 ~~~igiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~---~~~~~~~~~~~~~~ll~~----~~~D~V~i~   74 (330)
T 3e9m_A            5 KIRYGIMST-AQIVPRFVAGLRESAQAEVRGIASRRL--ENAQKMA---KELAIPVAYGSYEELCKD----ETIDIIYIP   74 (330)
T ss_dssp             CEEEEECSC-CTTHHHHHHHHHHSSSEEEEEEBCSSS--HHHHHHH---HHTTCCCCBSSHHHHHHC----TTCSEEEEC
T ss_pred             eEEEEEECc-hHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHH---HHcCCCceeCCHHHHhcC----CCCCEEEEc
Confidence            589999998 999999999999889999999999753  2333343   35677 479999999974    589999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHHHHhccCCCcEEEEE
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIVE  190 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a~~~~~~~~dieIiE  190 (303)
                      |++..+.+.+..|+++|+||+|++| +.+.++.++|.++++++|+.++.+.|  |...+..++++.+.  +..-++..++
T Consensus        75 tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~~i~  152 (330)
T 3e9m_A           75 TYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQKSVFLPITQKVKATIQE--GGLGEILWVQ  152 (330)
T ss_dssp             CCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECCSGGGCHHHHHHHHHHHT--TTTCSEEEEE
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEEhhhhCHHHHHHHHHHhC--CCCCCeEEEE
Confidence            9999999999999999999999999 89999999999999999999888887  45555555655542  1233555555


Q ss_pred             c
Q 022057          191 S  191 (303)
Q Consensus       191 ~  191 (303)
                      .
T Consensus       153 ~  153 (330)
T 3e9m_A          153 S  153 (330)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=99.63  E-value=1.3e-15  Score=143.50  Aligned_cols=148  Identities=11%  Similarity=0.063  Sum_probs=117.9

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-ecCCHHHHHhccccCCCccEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ||+||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+..++   +.++++ +|+|+++++++    .++|+|+.
T Consensus         1 M~~rvgiIG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~---~~~~~~~~~~~~~~ll~~----~~~D~V~i   70 (344)
T 3ezy_A            1 MSLRIGVIGL-GRIGTIHAENLKMIDDAILYAISDVRE--DRLREMK---EKLGVEKAYKDPHELIED----PNVDAVLV   70 (344)
T ss_dssp             -CEEEEEECC-SHHHHHHHHHGGGSTTEEEEEEECSCH--HHHHHHH---HHHTCSEEESSHHHHHHC----TTCCEEEE
T ss_pred             CeeEEEEEcC-CHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHH---HHhCCCceeCCHHHHhcC----CCCCEEEE
Confidence            6899999998 999999999999889999999999752  2223333   245664 79999999974    58999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC--cHHHHHHHHHHHHhccCCCcEEEE
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEIV  189 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~--SiGv~ll~~~a~~~~~~~~dieIi  189 (303)
                      +|++..+.+.+..|+++|+||++++| +.+.++.++|.++++++|+.++++.|+  ...+..++++.+.  +..-++..+
T Consensus        71 ~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--G~iG~i~~~  148 (344)
T 3ezy_A           71 CSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILFTGFNRRFDRNFKKLKEAVEN--GTIGKPHVL  148 (344)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHT--TTTSSEEEE
T ss_pred             cCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEEEeecccCCHHHHHHHHHHHc--CCCCCeEEE
Confidence            99999999999999999999999999 899999999999999999988887765  4444445555432  234466666


Q ss_pred             EccC
Q 022057          190 ESRP  193 (303)
Q Consensus       190 E~Hh  193 (303)
                      +.+.
T Consensus       149 ~~~~  152 (344)
T 3ezy_A          149 RITS  152 (344)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6543

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=99.63  E-value=2.6e-15  Score=141.18  Aligned_cols=148  Identities=13%  Similarity=0.128  Sum_probs=119.2

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      +|+||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+..++   ..+++++++|+++++++    .++|+|+.+
T Consensus         3 ~~~rvgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~g~~~~~~~~~~l~~----~~~D~V~i~   72 (344)
T 3euw_A            3 LTLRIALFGA-GRIGHVHAANIAANPDLELVVIADPFI--EGAQRLA---EANGAEAVASPDEVFAR----DDIDGIVIG   72 (344)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHH---HTTTCEEESSHHHHTTC----SCCCEEEEC
T ss_pred             CceEEEEECC-cHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHH---HHcCCceeCCHHHHhcC----CCCCEEEEe
Confidence            4699999998 999999999999999999999999753  2333344   35678899999999964    589999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCc--HHHHHHHHHHHHhccCCCcEEEEE
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQAAISASFHYKNVEIVE  190 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~S--iGv~ll~~~a~~~~~~~~dieIiE  190 (303)
                      |++..+.+.+..|+++|++|++++| +.+.++.++|.++++++|+.+++..|+-  ..+..++++.+.  +..-++..++
T Consensus        73 tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~~v~  150 (344)
T 3euw_A           73 SPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGASKVMLGFNRRFDPSFAAINARVAN--QEIGNLEQLV  150 (344)
T ss_dssp             SCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEECCGGGGCHHHHHHHHHHHT--TTTSSEEEEE
T ss_pred             CCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEecchhhcCHHHHHHHHHHhc--CCCCceEEEE
Confidence            9999999999999999999999999 8999999999999999999888876653  444444555432  2344666666


Q ss_pred             ccC
Q 022057          191 SRP  193 (303)
Q Consensus       191 ~Hh  193 (303)
                      .+.
T Consensus       151 ~~~  153 (344)
T 3euw_A          151 IIS  153 (344)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            543

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=99.63  E-value=2.1e-15  Score=140.39  Aligned_cols=141  Identities=18%  Similarity=0.184  Sum_probs=111.2

Q ss_pred             eecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCC
Q 022057           27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (303)
Q Consensus        27 ~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (303)
                      ||.++..+++||+|+|+ |+||+.+++.+.+.+++++++++|++.  ..+..++   ..  +++++|+++++++    .+
T Consensus         2 m~~p~~~~~~~igiIG~-G~~g~~~~~~l~~~~~~~~v~v~d~~~--~~~~~~~---~~--~~~~~~~~~~l~~----~~   69 (315)
T 3c1a_A            2 MSIPANNSPVRLALIGA-GRWGKNYIRTIAGLPGAALVRLASSNP--DNLALVP---PG--CVIESDWRSVVSA----PE   69 (315)
T ss_dssp             -------CCEEEEEEEC-TTTTTTHHHHHHHCTTEEEEEEEESCH--HHHTTCC---TT--CEEESSTHHHHTC----TT
T ss_pred             CCCCCCCCcceEEEECC-cHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHH---hh--CcccCCHHHHhhC----CC
Confidence            45566666899999998 999999999999889999999999752  1222222   12  6788999999853    57


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHHHHh
Q 022057          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISA  179 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a~~~  179 (303)
                      +|+|+.+|++..+.+.+..|+++|+||++++| +.+.++.++|.++++++|+.++.+.|  |+.....++++.+.+
T Consensus        70 ~D~V~i~tp~~~h~~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~l  145 (315)
T 3c1a_A           70 VEAVIIATPPATHAEITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQLFNPAWEALKADLTSI  145 (315)
T ss_dssp             CCEEEEESCGGGHHHHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECGGGGCHHHHHHHHTHHHH
T ss_pred             CCEEEEeCChHHHHHHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeechhcCHHHHHHHHHHHHc
Confidence            99999999999999999999999999999988 78999999999999999998887765  556666666666533

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=99.62  E-value=4.9e-15  Score=139.67  Aligned_cols=147  Identities=18%  Similarity=0.113  Sum_probs=116.2

Q ss_pred             CceeEEEEcCCcHHHHH-HHH-HHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           34 SNIKVIINGAVKEIGRA-AVI-AVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~-i~~-~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ||+||+|+|+ |+||+. ++. .+...++++|++++|++..  .+....   ...++++|+|+++++++    .++|+|+
T Consensus         1 m~~rvgiiG~-G~~g~~~~~~~~~~~~~~~~l~av~d~~~~--~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~   70 (345)
T 3f4l_A            1 MVINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAK--PEEQAP---IYSHIHFTSDLDEVLND----PDVKLVV   70 (345)
T ss_dssp             -CEEEEEECC-SHHHHHHTHHHHTTCTTTEEEEEEECSSCC--GGGGSG---GGTTCEEESCTHHHHTC----TTEEEEE
T ss_pred             CceEEEEEec-CHHHHHHHHHHHHhcCCCeEEEEEEcCCHh--HHHHHH---hcCCCceECCHHHHhcC----CCCCEEE
Confidence            6899999998 999985 788 5577899999999997531  111111   23468899999999974    5799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC--cHHHHHHHHHHHHhccCCCcEEE
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEI  188 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~--SiGv~ll~~~a~~~~~~~~dieI  188 (303)
                      .+|++..+.+.+..|+++|+||+|++| +.+.++.++|.++++++|+.+.+..|+  .....-++++.+.  +..-++.-
T Consensus        71 i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~  148 (345)
T 3f4l_A           71 VCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIES--GKLGEIVE  148 (345)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHH--STTCSEEE
T ss_pred             EcCChHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEechhcCHHHHHHHHHHhc--CCCCCeEE
Confidence            999999999999999999999999999 889999999999999999999888774  5555556665532  23345666


Q ss_pred             EEcc
Q 022057          189 VESR  192 (303)
Q Consensus       189 iE~H  192 (303)
                      ++.+
T Consensus       149 ~~~~  152 (345)
T 3f4l_A          149 VESH  152 (345)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=99.62  E-value=3.2e-15  Score=141.28  Aligned_cols=146  Identities=16%  Similarity=0.140  Sum_probs=118.5

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      +|+||+|+|+ |+||+.+++.+.+. ++++|++++|++.  ..+..++   ..++++.++|+++++++    .++|+|+.
T Consensus        12 ~~~rvgiiG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~i   81 (354)
T 3q2i_A           12 RKIRFALVGC-GRIANNHFGALEKHADRAELIDVCDIDP--AALKAAV---ERTGARGHASLTDMLAQ----TDADIVIL   81 (354)
T ss_dssp             SCEEEEEECC-STTHHHHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHHCCEEESCHHHHHHH----CCCSEEEE
T ss_pred             CcceEEEEcC-cHHHHHHHHHHHhCCCCeEEEEEEcCCH--HHHHHHH---HHcCCceeCCHHHHhcC----CCCCEEEE
Confidence            3699999998 99999999999988 8999999999753  2233333   24678899999999974    58999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHHHHhccCCCcEEEE
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a~~~~~~~~dieIi  189 (303)
                      +|++..+.+.+..|+++|+||++++| +.+.++.++|.++++++|+.+++..|  |+..+.-++++.+.  +..-++..+
T Consensus        82 ~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~~v  159 (354)
T 3q2i_A           82 TTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQNRRNATLQLLKRAMQE--KRFGRIYMV  159 (354)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHT--TTTCSEEEE
T ss_pred             CCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEEcccCCHHHHHHHHHHhc--CCCCceEEE
Confidence            99999999999999999999999999 89999999999999999999988877  56665555555532  233455555


Q ss_pred             Ec
Q 022057          190 ES  191 (303)
Q Consensus       190 E~  191 (303)
                      +.
T Consensus       160 ~~  161 (354)
T 3q2i_A          160 NV  161 (354)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=99.62  E-value=3.2e-15  Score=139.42  Aligned_cols=119  Identities=20%  Similarity=0.310  Sum_probs=101.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCC-ccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA-RAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~-~DVvIDf  113 (303)
                      ..|++|+|++|+||+.+++.+.+. ++++++.+++...|+.         ..|+++|.|++++.++    .+ +|++|+|
T Consensus        13 ~~~vvV~Gasg~~G~~~~~~l~~~-g~~~v~~VnP~~~g~~---------i~G~~vy~sl~el~~~----~~~~DvaIi~   78 (297)
T 2yv2_A           13 ETRVLVQGITGREGSFHAKAMLEY-GTKVVAGVTPGKGGSE---------VHGVPVYDSVKEALAE----HPEINTSIVF   78 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----CTTCCEEEEC
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhC-CCcEEEEeCCCCCCce---------ECCEeeeCCHHHHhhc----CCCCCEEEEe
Confidence            578999999999999999998865 8888888886532221         2589999999999742    24 9999999


Q ss_pred             CCchhHHHHHHHHHHcCCC-eEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          114 TDASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~-vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      ++|+.+.+.++.|+++|++ +|+.|+|+++++.++|.++|++.++. ++.|| ++|+
T Consensus        79 vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGPN-c~Gi  133 (297)
T 2yv2_A           79 VPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGAT-IIGPN-CPGA  133 (297)
T ss_dssp             CCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE-EECSS-SCEE
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcCC-CCee
Confidence            9999999999999999999 88889999998889999999998885 78899 7776

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=99.62  E-value=1.5e-15  Score=143.46  Aligned_cols=146  Identities=11%  Similarity=0.079  Sum_probs=117.2

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      +++||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+..++   ..++++.++|+++++++    .++|+|+.+
T Consensus         4 ~~~~vgiiG~-G~~g~~~~~~l~~~~~~~lvav~d~~~--~~~~~~~---~~~g~~~~~~~~~~l~~----~~~D~V~i~   73 (354)
T 3db2_A            4 NPVGVAAIGL-GRWAYVMADAYTKSEKLKLVTCYSRTE--DKREKFG---KRYNCAGDATMEALLAR----EDVEMVIIT   73 (354)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEECSSH--HHHHHHH---HHHTCCCCSSHHHHHHC----SSCCEEEEC
T ss_pred             CcceEEEEcc-CHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHH---HHcCCCCcCCHHHHhcC----CCCCEEEEe
Confidence            4689999998 999999999999889999999999752  2233333   24678889999999964    579999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC--cHHHHHHHHHHHHhccCCCcEEEEE
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEIVE  190 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~--SiGv~ll~~~a~~~~~~~~dieIiE  190 (303)
                      |++..+.+.+..|+++|+||+|++| +.+.++.++|.++++++|+.+.++.|+  ...+..++++.+.  +..-++.-++
T Consensus        74 tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~R~~p~~~~~k~~i~~--g~iG~i~~v~  151 (354)
T 3db2_A           74 VPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSSRRLGALRKMKEMIDT--KEIGEVSSIE  151 (354)
T ss_dssp             SCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEECGGGGSHHHHHHHHHHHT--TTTCCEEEEE
T ss_pred             CChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEeechhcCHHHHHHHHHHhc--CCCCCeEEEE
Confidence            9999999999999999999999999 899999999999999999988887765  4444445555432  2334555454


Q ss_pred             c
Q 022057          191 S  191 (303)
Q Consensus       191 ~  191 (303)
                      .
T Consensus       152 ~  152 (354)
T 3db2_A          152 A  152 (354)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=99.62  E-value=5.1e-15  Score=137.44  Aligned_cols=119  Identities=18%  Similarity=0.281  Sum_probs=101.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ++||+|+|++|+||+.+++.+.+. ++++++.+++...|.         ..+|+++|.|++++.++    .++|++|+|+
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~-g~~~V~~V~p~~~g~---------~~~G~~vy~sl~el~~~----~~~D~viI~t   72 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAY-GTKMVGGVTPGKGGT---------THLGLPVFNTVREAVAA----TGATASVIYV   72 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTC---------EETTEEEESSHHHHHHH----HCCCEEEECC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCCcccc---------eeCCeeccCCHHHHhhc----CCCCEEEEec
Confidence            589999999999999999998875 789999898753221         13689999999999852    3799999999


Q ss_pred             CchhHHHHHHHHHHcCCCe-EEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          115 DASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~v-VigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      +|+.+.+.++.|+++|+++ |+.|+|++.++.++|.++|+++++. ++.|| ++|+
T Consensus        73 P~~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~-liGPN-c~Gi  126 (288)
T 2nu8_A           73 PAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVR-MIGPN-TPGV  126 (288)
T ss_dssp             CGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE-EECSS-CCEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEecC-Ccce
Confidence            9999999999999999996 6678899998889999999999886 58999 5565

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=99.62  E-value=1.6e-15  Score=145.30  Aligned_cols=146  Identities=14%  Similarity=0.128  Sum_probs=119.0

Q ss_pred             CceeEEEEcCCc-HHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           34 SNIKVIINGAVK-EIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        34 ~~ikV~V~G~~G-rMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      |++||+|+|+ | .||+.+++.+.+.++++|++++|++.  ..+.+++   .++++++|+|+++++++    .++|+|+.
T Consensus         1 ~~~rigiiG~-G~~~~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~g~~~~~~~~ell~~----~~vD~V~i   70 (387)
T 3moi_A            1 MKIRFGICGL-GFAGSVLMAPAMRHHPDAQIVAACDPNE--DVRERFG---KEYGIPVFATLAEMMQH----VQMDAVYI   70 (387)
T ss_dssp             CCEEEEEECC-SHHHHTTHHHHHHHCTTEEEEEEECSCH--HHHHHHH---HHHTCCEESSHHHHHHH----SCCSEEEE
T ss_pred             CceEEEEEeC-CHHHHHHHHHHHHhCCCeEEEEEEeCCH--HHHHHHH---HHcCCCeECCHHHHHcC----CCCCEEEE
Confidence            5799999998 8 99999999999999999999999752  2233333   35688899999999974    67999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCc--HHHHHHHHHHHHhccCCCcEEEE
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQAAISASFHYKNVEIV  189 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~S--iGv~ll~~~a~~~~~~~~dieIi  189 (303)
                      +|+|..+.+.+..|+++|+||+|++| ..+.++.++|.++++++|+.+.++.|+-  ..+.-++++.+.  ...-++..+
T Consensus        71 ~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--g~iG~i~~~  148 (387)
T 3moi_A           71 ASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVVGTSRSHDPVVRTLRAIVQE--GSVGRVSML  148 (387)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHHH--CTTCCEEEE
T ss_pred             cCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEEEeccccCHHHHHHHHHHhc--CCCCCeEEE
Confidence            99999999999999999999999999 8999999999999999999988887654  444445555432  234456656


Q ss_pred             Ec
Q 022057          190 ES  191 (303)
Q Consensus       190 E~  191 (303)
                      +.
T Consensus       149 ~~  150 (387)
T 3moi_A          149 NC  150 (387)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=99.61  E-value=1.3e-14  Score=137.99  Aligned_cols=144  Identities=14%  Similarity=0.136  Sum_probs=117.8

Q ss_pred             ceeEEEEcCCcHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |+||+|+|+ |+||+. +++.+.+.++++|++++|++.  ..+..     ...++++|+|+++++++    .++|+|+.+
T Consensus         7 ~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~-----~~~~~~~~~~~~~ll~~----~~~D~V~i~   74 (364)
T 3e82_A            7 TINIALIGY-GFVGKTFHAPLIRSVPGLNLAFVASRDE--EKVKR-----DLPDVTVIASPEAAVQH----PDVDLVVIA   74 (364)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHHHTSTTEEEEEEECSCH--HHHHH-----HCTTSEEESCHHHHHTC----TTCSEEEEC
T ss_pred             cceEEEECC-CHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHHHh-----hCCCCcEECCHHHHhcC----CCCCEEEEe
Confidence            699999998 999996 899898899999999999753  12221     12367889999999974    689999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHHHHhccCCCcEEEEE
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIVE  190 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a~~~~~~~~dieIiE  190 (303)
                      |++..+.+.+..|+++||||+|++| +.+.++.++|.++|+++|+.+.+..|  |...+.-++++.+.  +..-++.-++
T Consensus        75 tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~~~  152 (364)
T 3e82_A           75 SPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLSVFHNRRWDSDYLGIRQVIEQ--GTLGAVKHFE  152 (364)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHH--TTTCSEEEEE
T ss_pred             CChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEeecccCHHHHHHHHHHHc--CCCcceEEEE
Confidence            9999999999999999999999999 89999999999999999999988887  56666666666542  2344555555


Q ss_pred             cc
Q 022057          191 SR  192 (303)
Q Consensus       191 ~H  192 (303)
                      .+
T Consensus       153 ~~  154 (364)
T 3e82_A          153 SH  154 (364)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=99.60  E-value=4.1e-15  Score=138.52  Aligned_cols=119  Identities=19%  Similarity=0.333  Sum_probs=101.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ..|++|+|++|+||+.+++.+.+ .++++++.+++...|+.         -.|+++|.|++++.++    .++|++|+|+
T Consensus        13 ~~~v~V~Gasg~~G~~~~~~l~~-~g~~~V~~VnP~~~g~~---------i~G~~vy~sl~el~~~----~~~Dv~ii~v   78 (294)
T 2yv1_A           13 NTKAIVQGITGRQGSFHTKKMLE-CGTKIVGGVTPGKGGQN---------VHGVPVFDTVKEAVKE----TDANASVIFV   78 (294)
T ss_dssp             TCCEEEETTTSHHHHHHHHHHHH-TTCCEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEECC
T ss_pred             CCEEEEECCCCCHHHHHHHHHHh-CCCeEEEEeCCCCCCce---------ECCEeeeCCHHHHhhc----CCCCEEEEcc
Confidence            57899999999999999998886 48888888886532221         2589999999999842    2799999999


Q ss_pred             CchhHHHHHHHHHHcCCC-eEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          115 DASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~-vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      +|+.+.+.++.|+++|++ +|+.|+|+++++.++|.++|++.++. ++.|| ++|+
T Consensus        79 p~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGPN-c~Gi  132 (294)
T 2yv1_A           79 PAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVK-IIGPN-TPGI  132 (294)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE-EECSS-CCEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcCC-Ccee
Confidence            999999999999999999 77889999998899999999998885 78899 7777

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=99.60  E-value=1.4e-14  Score=135.94  Aligned_cols=147  Identities=8%  Similarity=0.074  Sum_probs=115.9

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eecCCHHHHHhccccCCCccEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      .|+||+|+|+ |+||+.+++.+. +.+++++++++|++.  ..+..++   +.+++ .+++|++++++.    .++|+|+
T Consensus         7 ~~~~v~iiG~-G~ig~~~~~~l~~~~~~~~~vav~d~~~--~~~~~~a---~~~g~~~~~~~~~~~l~~----~~~D~V~   76 (346)
T 3cea_A            7 KPLRAAIIGL-GRLGERHARHLVNKIQGVKLVAACALDS--NQLEWAK---NELGVETTYTNYKDMIDT----ENIDAIF   76 (346)
T ss_dssp             CCEEEEEECC-STTHHHHHHHHHHTCSSEEEEEEECSCH--HHHHHHH---HTTCCSEEESCHHHHHTT----SCCSEEE
T ss_pred             CcceEEEEcC-CHHHHHHHHHHHhcCCCcEEEEEecCCH--HHHHHHH---HHhCCCcccCCHHHHhcC----CCCCEEE
Confidence            3699999998 999999999988 778999999999752  2222333   24666 678999999863    4799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhc-CCeEEEcCC--CcHHHHHHHHHHHHhccCCCcEE
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKA-SMGCLIAPT--LSIGSILLQQAAISASFHYKNVE  187 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~-~i~vv~a~N--~SiGv~ll~~~a~~~~~~~~die  187 (303)
                      ++|++..+.+.+..|+++|++|++++| +.+.++.++|.++++++ ++.++.+.|  |+.+...+.++.+.  ...-++.
T Consensus        77 i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~~~~~r~~p~~~~~~~~i~~--g~iG~i~  154 (346)
T 3cea_A           77 IVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQSGFMRRYDDSYRYAKKIVDN--GDIGKII  154 (346)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEECCCGGGTCHHHHHHHHHHHT--TTTCSEE
T ss_pred             EeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEecccccCHHHHHHHHHHHc--CCCCCeE
Confidence            999999999999999999999999997 78899999999999998 998887776  45566555555532  2234565


Q ss_pred             EEEcc
Q 022057          188 IVESR  192 (303)
Q Consensus       188 IiE~H  192 (303)
                      .++.+
T Consensus       155 ~v~~~  159 (346)
T 3cea_A          155 YMRGY  159 (346)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55553

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=99.59  E-value=6e-15  Score=139.80  Aligned_cols=122  Identities=11%  Similarity=0.147  Sum_probs=103.6

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC----eeecCCHHHHHhccccCCCccE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE----IPVMSDLTMVLGSISQSKARAV  109 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g----v~v~~dl~~~l~~~~~~~~~DV  109 (303)
                      .|+||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+..++   ..++    +++++|+++++++    .++|+
T Consensus         5 ~~~~vgiiG~-G~ig~~~~~~l~~~~~~~lv~v~d~~~--~~~~~~a---~~~~~~~~~~~~~~~~~ll~~----~~~D~   74 (362)
T 1ydw_A            5 TQIRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSL--EKAKAFA---TANNYPESTKIHGSYESLLED----PEIDA   74 (362)
T ss_dssp             -CEEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHH---HHTTCCTTCEEESSHHHHHHC----TTCCE
T ss_pred             CceEEEEECc-hHHHHHHHHHHhhCCCcEEEEEEcCCH--HHHHHHH---HHhCCCCCCeeeCCHHHHhcC----CCCCE
Confidence            3699999998 999999999999889999999999752  2222233   1334    5778999999963    57999


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      |+.+|++..+.+.+..|+++|+||++++| +.+.++.++|.++|+++|+.++.+.|+
T Consensus        75 V~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~~~~~  131 (362)
T 1ydw_A           75 LYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDGTMW  131 (362)
T ss_dssp             EEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEECCCG
T ss_pred             EEEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEEEEee
Confidence            99999999999999999999999999998 889999999999999999998877654

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=99.59  E-value=5.8e-15  Score=139.14  Aligned_cols=145  Identities=12%  Similarity=0.054  Sum_probs=114.9

Q ss_pred             ceeEEEEcCCc-HHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCe-eecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVK-EIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~G-rMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ++||+|+|+ | .||+.+++.+.+. ++++|++++|++.  ..+..++   +.+++ ++|+|+++++++    .++|+|+
T Consensus        18 ~irvgiIG~-G~~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~a---~~~~~~~~~~~~~~ll~~----~~vD~V~   87 (340)
T 1zh8_A           18 KIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTR--SHAEEFA---KMVGNPAVFDSYEELLES----GLVDAVD   87 (340)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSH--HHHHHHH---HHHSSCEEESCHHHHHHS----SCCSEEE
T ss_pred             ceeEEEEec-CHHHHHHHHHHHHhCCCceEEEEEEcCCH--HHHHHHH---HHhCCCcccCCHHHHhcC----CCCCEEE
Confidence            699999998 9 8999999999988 8999999999753  2233333   24555 789999999974    5799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC--cHHHHHHHHHHHHhccCCCcEEE
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEI  188 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~--SiGv~ll~~~a~~~~~~~~dieI  188 (303)
                      .+|++..+.+.+..|+++|+||+|++| +.+.++.++|.++|+++|+.+.++.|+  ......++++.+.  +..-++.-
T Consensus        88 i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--g~iG~i~~  165 (340)
T 1zh8_A           88 LTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRHVPAFWKAKELVES--GAIGDPVF  165 (340)
T ss_dssp             ECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGGCHHHHHHHHHHHT--TTTSSEEE
T ss_pred             EeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhc--CCCCCcEE
Confidence            999999999999999999999999999 789999999999999999988876665  3444444555432  22345555


Q ss_pred             EEc
Q 022057          189 VES  191 (303)
Q Consensus       189 iE~  191 (303)
                      ++.
T Consensus       166 v~~  168 (340)
T 1zh8_A          166 MNW  168 (340)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=99.59  E-value=3.4e-15  Score=143.88  Aligned_cols=133  Identities=14%  Similarity=0.117  Sum_probs=110.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc--------CCcEEEEEEecCCCCcchhhhhcCCCCCCe-eecCCHHHHHhccccCC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA--------RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSK  105 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~--------~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~  105 (303)
                      +|||||+|+ |.||+.+++.+.+.        ++++|++++|++.  ..+..++   +++++ ++|+|+++++++    .
T Consensus        26 klrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~--~~a~~~a---~~~~~~~~y~d~~~ll~~----~   95 (412)
T 4gqa_A           26 RLNIGLIGS-GFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQ--AMAERHA---AKLGAEKAYGDWRELVND----P   95 (412)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSH--HHHHHHH---HHHTCSEEESSHHHHHHC----T
T ss_pred             cceEEEEcC-cHHHHHHHHHHHhccccccccCCCeEEEEEEcCCH--HHHHHHH---HHcCCCeEECCHHHHhcC----C
Confidence            599999998 99999999988764        4789999999753  2333333   35666 589999999975    6


Q ss_pred             CccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC--cHHHHHHHHHHH
Q 022057          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAI  177 (303)
Q Consensus       106 ~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~--SiGv~ll~~~a~  177 (303)
                      ++|+|+.+|++..+.+.+..|+++||||+|++| +.+.++.++|.++|+++|+.+.+.-|+  ...+..++++.+
T Consensus        96 ~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~  170 (412)
T 4gqa_A           96 QVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTMVAFNNIKTPAALLAKQIIA  170 (412)
T ss_dssp             TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEEEECGGGTSHHHHHHHHHHH
T ss_pred             CCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCeeeeccceecCHHHHHHHHHHh
Confidence            899999999999999999999999999999999 899999999999999999998887774  444545555553

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=99.58  E-value=1.9e-14  Score=133.23  Aligned_cols=120  Identities=15%  Similarity=0.158  Sum_probs=103.6

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHh---cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~---~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (303)
                      .|+||+|+|+ |.||+.+++.+..   .++++|+++.|++...          ..++++ +.|+++++++    .++|+|
T Consensus         6 ~~~rvgiIG~-G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----------~~~g~~-~~~~~ell~~----~~vD~V   69 (294)
T 1lc0_A            6 GKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG----------SLDEVR-QISLEDALRS----QEIDVA   69 (294)
T ss_dssp             CSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC----------EETTEE-BCCHHHHHHC----SSEEEE
T ss_pred             CcceEEEEEE-cHHHHHHHHHHhccccCCCEEEEEEECchHHH----------HHcCCC-CCCHHHHhcC----CCCCEE
Confidence            3799999998 9999999998876   6899999999875311          235666 5899999974    689999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      +.+|++..+.+++..|+++|+||+|++| ..+.++.++|.++++++|+.++.+.|+-..-
T Consensus        70 ~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~~~r~~p  129 (294)
T 1lc0_A           70 YICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLME  129 (294)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGGGSH
T ss_pred             EEeCCcHhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhccH
Confidence            9999999999999999999999999999 7899999999999999999988888876543

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=99.58  E-value=1.1e-14  Score=135.43  Aligned_cols=119  Identities=14%  Similarity=0.233  Sum_probs=100.4

Q ss_pred             ceeEEEEcCCcHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |+||+|+|+ |+||+. +++.+.+.++++|++++|++.  ..+..++   ..+++++++|++++ .     .++|+|+.+
T Consensus         5 ~~~vgiiG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~--~~~~~~~---~~~g~~~~~~~~~l-~-----~~~D~V~i~   72 (319)
T 1tlt_A            5 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTR--AKALPIC---ESWRIPYADSLSSL-A-----ASCDAVFVH   72 (319)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSC--TTHHHHH---HHHTCCBCSSHHHH-H-----TTCSEEEEC
T ss_pred             cceEEEECC-CHHHHHHHHHHHHhCCCeEEEEEECCCH--HHHHHHH---HHcCCCccCcHHHh-h-----cCCCEEEEe
Confidence            589999998 999996 999888889999999999753  2223333   24566788899877 4     589999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      |++..+.+.+..|+++|++|++++| +.+.++.++|.++++++++.++.+-|+
T Consensus        73 tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~  125 (319)
T 1tlt_A           73 SSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNR  125 (319)
T ss_dssp             SCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGG
T ss_pred             CCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeeec
Confidence            9999999999999999999999998 789999999999999999888776554

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=99.58  E-value=4.5e-15  Score=146.68  Aligned_cols=172  Identities=13%  Similarity=0.125  Sum_probs=127.7

Q ss_pred             eeeecccccccccceE--------EEeecCCCCCceeEEEEcCC---cHHHHHHHHHHHhc-CCcEEEEEEecCCCCcch
Q 022057            9 HCRMHHISQNVKAKRF--------ISCSTNPPQSNIKVIINGAV---KEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDI   76 (303)
Q Consensus         9 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ikV~V~G~~---GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~   76 (303)
                      |-.-||.|.|+++-+=        -++|+-|+..++||+|+|+.   |.||+.+++.+.+. ++++|++++|++.  ..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~--~~a   82 (479)
T 2nvw_A            5 HHHHHHSSENLYFQGHMLANNNKRSKLSTVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTL--KSS   82 (479)
T ss_dssp             ---CTTCGGGTGGGTCCCCCCCTTSGGGSSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCH--HHH
T ss_pred             cccccccchhHHHHHHHHhhccccccCCCCCCCCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCH--HHH
Confidence            4456888899988322        23344443336999999973   99999999999987 8999999999752  222


Q ss_pred             hhhhcCCCCCCee---ecCCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcC------CCeEEeCC-CCCHHHHH
Q 022057           77 GMVCDMEQPLEIP---VMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG------MRSVVYVP-HIQLETVS  146 (303)
Q Consensus        77 ~~~~g~~~~~gv~---v~~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g------~~vVigTT-G~~~e~~~  146 (303)
                      ..++   +.++++   +|+|+++++++    .++|+|+.+|++..+.+.+..|+++|      +||+|++| +.+.++.+
T Consensus        83 ~~~a---~~~g~~~~~~~~d~~ell~~----~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~  155 (479)
T 2nvw_A           83 LQTI---EQLQLKHATGFDSLESFAQY----KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAE  155 (479)
T ss_dssp             HHHH---HHTTCTTCEEESCHHHHHHC----TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHH
T ss_pred             HHHH---HHcCCCcceeeCCHHHHhcC----CCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHH
Confidence            2333   245554   89999999974    58999999999999999999999999      99999998 78999999


Q ss_pred             HHHHHhhhcC-CeEEEcCCC--cHHHHHHHHHHHHhccCCCcEEEEEc
Q 022057          147 ALSAFCDKAS-MGCLIAPTL--SIGSILLQQAAISASFHYKNVEIVES  191 (303)
Q Consensus       147 ~L~~~a~~~~-i~vv~a~N~--SiGv~ll~~~a~~~~~~~~dieIiE~  191 (303)
                      +|.++++++| +.+.++.|+  ...+..++++.+.  ...-++..++.
T Consensus       156 ~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~~i~~--G~iG~i~~v~~  201 (479)
T 2nvw_A          156 ELYSISQQRANLQTIICLQGRKSPYIVRAKELISE--GCIGDINSIEI  201 (479)
T ss_dssp             HHHHHHHTCTTCEEEEECGGGGCHHHHHHHHHHHT--TTTCSEEEEEE
T ss_pred             HHHHHHHHcCCeEEEEEeccccCHHHHHHHHHHHc--CCCCCeEEEEE
Confidence            9999999999 888877664  4455455555432  22334444443

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=99.57  E-value=1.7e-14  Score=136.85  Aligned_cols=130  Identities=16%  Similarity=0.147  Sum_probs=110.7

Q ss_pred             ceeEEEEcCCcHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-CeeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      |+||+|+|+ |+||+. +++.+.+.++++|++++|++.  ..+.+      .+ ++++|+|+++++++    .++|+|+.
T Consensus         5 ~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~------~~~~~~~~~~~~~ll~~----~~vD~V~i   71 (358)
T 3gdo_A            5 TIKVGILGY-GLSGSVFHGPLLDVLDEYQISKIMTSRT--EEVKR------DFPDAEVVHELEEITND----PAIELVIV   71 (358)
T ss_dssp             CEEEEEECC-SHHHHHTTHHHHTTCTTEEEEEEECSCH--HHHHH------HCTTSEEESSTHHHHTC----TTCCEEEE
T ss_pred             cceEEEEcc-CHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHHHh------hCCCCceECCHHHHhcC----CCCCEEEE
Confidence            589999998 999996 899888889999999999753  11111      23 67889999999974    68999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHHH
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAI  177 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a~  177 (303)
                      +|++..+.+.+..|+++||||+|++| +.+.++.++|.++|+++|+.+.+..|  |...+..++++.+
T Consensus        72 ~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~  139 (358)
T 3gdo_A           72 TTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLIS  139 (358)
T ss_dssp             CSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEEEeeecccCHHHHHHHHHHh
Confidence            99999999999999999999999999 89999999999999999999998887  4566666666654

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=99.57  E-value=9.6e-15  Score=135.32  Aligned_cols=120  Identities=17%  Similarity=0.231  Sum_probs=103.3

Q ss_pred             ceeEEEEcCCcHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |+||+|+|+ |+||+. +++.+.+.++++|++++|++.  ..+..++   ..++++.++|++++++      ++|+|+.+
T Consensus         6 ~~~igiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~~~~~~~~~~~ll~------~~D~V~i~   73 (308)
T 3uuw_A            6 NIKMGMIGL-GSIAQKAYLPILTKSERFEFVGAFTPNK--VKREKIC---SDYRIMPFDSIESLAK------KCDCIFLH   73 (308)
T ss_dssp             CCEEEEECC-SHHHHHHTHHHHTSCSSSEEEEEECSCH--HHHHHHH---HHHTCCBCSCHHHHHT------TCSEEEEC
T ss_pred             cCcEEEEec-CHHHHHHHHHHHHhCCCeEEEEEECCCH--HHHHHHH---HHcCCCCcCCHHHHHh------cCCEEEEe
Confidence            589999998 999996 999888889999999999753  2233333   2467777999999993      79999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                      |++..+.+.+..|+++|+||++++| +.+.++.++|.++++++|+.+.++-|+-
T Consensus        74 tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r  127 (308)
T 3uuw_A           74 SSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNLMVGFNRR  127 (308)
T ss_dssp             CCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEEECCGGG
T ss_pred             CCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeeccc
Confidence            9999999999999999999999999 7899999999999999999888776643

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=99.56  E-value=5.8e-15  Score=139.42  Aligned_cols=145  Identities=14%  Similarity=0.093  Sum_probs=112.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc-------EEEEEEecCCCCcchhhhhcCCCCCCe-eecCCHHHHHhccccCCC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM-------EVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKA  106 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~-------eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~  106 (303)
                      ++||||+|+ |.||+.+++.+...|++       +|++++|++.  ..+..++   +++++ .+|+|+++++++    .+
T Consensus         6 klrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~--~~a~~~a---~~~g~~~~~~d~~~ll~~----~~   75 (390)
T 4h3v_A            6 NLGIGLIGY-AFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDA--EAVRAAA---GKLGWSTTETDWRTLLER----DD   75 (390)
T ss_dssp             EEEEEEECH-HHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSH--HHHHHHH---HHHTCSEEESCHHHHTTC----TT
T ss_pred             cCcEEEEcC-CHHHHHHHHHHHhCccccccccCceEEEEEcCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CC
Confidence            489999998 99999999998877654       9999999753  2333333   35566 579999999974    68


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHH---hhhcCCeEEEcCCC--cHHHHHHHHHHHHhc
Q 022057          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAF---CDKASMGCLIAPTL--SIGSILLQQAAISAS  180 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~---a~~~~i~vv~a~N~--SiGv~ll~~~a~~~~  180 (303)
                      +|+|+.+|++..|.+.+..|+++||||+|++| +.+.+|.++|.++   ++++|+.+.+.-|+  ...+..++++.+.  
T Consensus        76 iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~~v~~~~R~~p~~~~~k~~i~~--  153 (390)
T 4h3v_A           76 VQLVDVCTPGDSHAEIAIAALEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRSMVGFTYRRVPAIALARKLVAD--  153 (390)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHHT--
T ss_pred             CCEEEEeCChHHHHHHHHHHHHcCCCceeecCcccchhHHHHHHHHHHHHHhcCCceEEEeeeccCchHHHHHHHHHc--
Confidence            99999999999999999999999999999999 8999999999666   66688888877775  4444445555432  


Q ss_pred             cCCCcEEEEEc
Q 022057          181 FHYKNVEIVES  191 (303)
Q Consensus       181 ~~~~dieIiE~  191 (303)
                      +..-++.-++.
T Consensus       154 g~iG~i~~v~~  164 (390)
T 4h3v_A          154 GKIGTVRHVRA  164 (390)
T ss_dssp             TSSCSEEEEEE
T ss_pred             CCCCcceeeEE
Confidence            23445655554

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=99.55  E-value=2.2e-14  Score=136.22  Aligned_cols=146  Identities=15%  Similarity=0.151  Sum_probs=114.0

Q ss_pred             ceeEEEEcCCcHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-CeeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ++||+|+|+ |+||+. +++.+.+.++++|++++|++.  ..+..++   +.+ ++++|+|+++++++    .++|+|+.
T Consensus         5 ~~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~~~~~~~~~~~~ll~~----~~vD~V~i   74 (359)
T 3m2t_A            5 LIKVGLVGI-GAQMQENLLPSLLQMQDIRIVAACDSDL--ERARRVH---RFISDIPVLDNVPAMLNQ----VPLDAVVM   74 (359)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHHHTCTTEEEEEEECSSH--HHHGGGG---GTSCSCCEESSHHHHHHH----SCCSEEEE
T ss_pred             cceEEEECC-CHHHHHHHHHHHHhCCCcEEEEEEcCCH--HHHHHHH---HhcCCCcccCCHHHHhcC----CCCCEEEE
Confidence            489999998 999995 899999899999999999752  2233333   244 56789999999974    57899999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCcH--HHHHHHHHHHHhccCCCcEEEE
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI--GSILLQQAAISASFHYKNVEIV  189 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~Si--Gv~ll~~~a~~~~~~~~dieIi  189 (303)
                      +|++..+.+.+..|+++|+||+|++| +.+.++.++|.++++++|+.+.++.|+-.  .+..++++.+  .+..-++..+
T Consensus        75 ~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~--~g~iG~i~~~  152 (359)
T 3m2t_A           75 AGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARRSDVVSGVGMNFKFARPVRQLREMTQ--VDEFGETLHI  152 (359)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCEEECCHHHHCHHHHHHHHHHT--SGGGCCEEEE
T ss_pred             cCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCcHHHHHHHHHHH--CCCCCCeEEE
Confidence            99999999999999999999999999 89999999999999999998887766433  3333333332  1123455555


Q ss_pred             Ecc
Q 022057          190 ESR  192 (303)
Q Consensus       190 E~H  192 (303)
                      +.+
T Consensus       153 ~~~  155 (359)
T 3m2t_A          153 QLN  155 (359)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=99.55  E-value=9.5e-15  Score=137.24  Aligned_cols=146  Identities=10%  Similarity=0.029  Sum_probs=111.8

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC--CCcchhhhhcCCCCCC--eeecCCHHHHHhccccCCCccE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAV  109 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~--~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DV  109 (303)
                      ||+||+|+|+ |.+|+.+++.+  .++++|++++|++.  ..+...+..   ++++  .++|+|+++++++    .++|+
T Consensus         1 M~~rvgiiG~-G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ll~~----~~vD~   70 (337)
T 3ip3_A            1 MSLKICVIGS-SGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKAI---SEMNIKPKKYNNWWEMLEK----EKPDI   70 (337)
T ss_dssp             -CEEEEEECS-SSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHHH---HTTTCCCEECSSHHHHHHH----HCCSE
T ss_pred             CceEEEEEcc-chhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHHH---HHcCCCCcccCCHHHHhcC----CCCCE
Confidence            7899999998 89998888877  89999999999752  222223322   1334  4789999999974    57999


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCe--EEEcCC--CcHHHHHHHHHHHHhccCCC
Q 022057          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMG--CLIAPT--LSIGSILLQQAAISASFHYK  184 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~--vv~a~N--~SiGv~ll~~~a~~~~~~~~  184 (303)
                      |+.+|++..+.+.+..|+++||||+|++| +.+.++.++|.++++++|+.  +.+.-|  |......++++.+.  +..-
T Consensus        71 V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~v~~~~R~~p~~~~~k~~i~~--g~iG  148 (337)
T 3ip3_A           71 LVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNEVFFTAMFGIRYRPHFLTAKKLVSE--GAVG  148 (337)
T ss_dssp             EEECSSHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTTCCEEECCGGGGSHHHHHHHHHHHH--TTTS
T ss_pred             EEEeCCcchHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecccccCCHHHHHHHHHHhc--CCcc
Confidence            99999999999999999999999999999 89999999999999999988  555544  44455455555432  2334


Q ss_pred             cEEEEEc
Q 022057          185 NVEIVES  191 (303)
Q Consensus       185 dieIiE~  191 (303)
                      ++..++.
T Consensus       149 ~i~~i~~  155 (337)
T 3ip3_A          149 EIRLVNT  155 (337)
T ss_dssp             SEEEEEE
T ss_pred             ceEEEEE
Confidence            5655554

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=99.55  E-value=1.5e-14  Score=140.97  Aligned_cols=146  Identities=9%  Similarity=0.025  Sum_probs=114.5

Q ss_pred             ceeEEEEcCCcHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-----eecCCHHHHHhccccCCCcc
Q 022057           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-----PVMSDLTMVLGSISQSKARA  108 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-----~v~~dl~~~l~~~~~~~~~D  108 (303)
                      ++||+|+|+ |+||+ .+++.+.+.++++|++++|++.  ..+..++   +.+++     .+|+|+++++++    .++|
T Consensus        83 ~irigiIG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~--~~~~~~a---~~~g~~~~~~~~~~~~~~ll~~----~~vD  152 (433)
T 1h6d_A           83 RFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNA--EKAKIVA---AEYGVDPRKIYDYSNFDKIAKD----PKID  152 (433)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCH--HHHHHHH---HHTTCCGGGEECSSSGGGGGGC----TTCC
T ss_pred             ceEEEEECC-cHHHHHHHHHHHhhCCCcEEEEEEcCCH--HHHHHHH---HHhCCCcccccccCCHHHHhcC----CCCC
Confidence            689999998 99997 8999998888999999999752  2222222   23444     478999999864    5799


Q ss_pred             EEEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC--cHHHHHHHHHHHHhccCCCc
Q 022057          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKN  185 (303)
Q Consensus       109 VvIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~--SiGv~ll~~~a~~~~~~~~d  185 (303)
                      +|+.+|++..+.+.+..|+++|+||+|++| +.+.++.++|.++++++|+.++.+.|+  ......++++.+.  +..-+
T Consensus       153 ~V~iatp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--G~iG~  230 (433)
T 1h6d_A          153 AVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRE--NQLGK  230 (433)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHT--TSSCS
T ss_pred             EEEEcCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEEEechhcCHHHHHHHHHHHc--CCCCC
Confidence            999999999999999999999999999998 789999999999999999998887764  4455455555432  23446


Q ss_pred             EEEEEcc
Q 022057          186 VEIVESR  192 (303)
Q Consensus       186 ieIiE~H  192 (303)
                      +..++.+
T Consensus       231 i~~v~~~  237 (433)
T 1h6d_A          231 LGMVTTD  237 (433)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEE
Confidence            6666653

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=99.55  E-value=4.7e-14  Score=131.54  Aligned_cols=143  Identities=15%  Similarity=0.083  Sum_probs=111.9

Q ss_pred             eeEEEEcCCcHHHHHH-HHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-ecCCHHHHHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAA-VIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i-~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |||+|+|+ |+||+.+ ++.+.+ +++++++++|++.  ..+..++   +.++++ +++|++++++.    .++|+|+.+
T Consensus         1 ~~vgiiG~-G~~g~~~~~~~l~~-~~~~~vav~d~~~--~~~~~~~---~~~g~~~~~~~~~~~l~~----~~~D~V~i~   69 (332)
T 2glx_A            1 NRWGLIGA-STIAREWVIGAIRA-TGGEVVSMMSTSA--ERGAAYA---TENGIGKSVTSVEELVGD----PDVDAVYVS   69 (332)
T ss_dssp             CEEEEESC-CHHHHHTHHHHHHH-TTCEEEEEECSCH--HHHHHHH---HHTTCSCCBSCHHHHHTC----TTCCEEEEC
T ss_pred             CeEEEEcc-cHHHHHhhhHHhhc-CCCeEEEEECCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEEEe
Confidence            58999998 9999998 888887 9999999999753  2222333   245664 78999999863    479999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC--cHHHHHHHHHHHHhccCCCcEEEEE
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEIVE  190 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~--SiGv~ll~~~a~~~~~~~~dieIiE  190 (303)
                      |+|..+.+.+..|+++|+||++++| +.+.++.++|.++++++|+.++.+.|+  ..++..++++.+.  ...-++.-++
T Consensus        70 tp~~~h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~--g~iG~i~~v~  147 (332)
T 2glx_A           70 TTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAHRAMRDAIAE--GRIGRPIAAR  147 (332)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHHT--TTTSSEEEEE
T ss_pred             CChhHhHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEeehhhcCHHHHHHHHHHHc--CCCCCeEEEE
Confidence            9999999999999999999999998 789999999999999999998888774  4455555555432  2233455444


Q ss_pred             c
Q 022057          191 S  191 (303)
Q Consensus       191 ~  191 (303)
                      .
T Consensus       148 ~  148 (332)
T 2glx_A          148 V  148 (332)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=99.55  E-value=6.1e-14  Score=131.03  Aligned_cols=122  Identities=12%  Similarity=0.131  Sum_probs=102.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHH--------hccccCCC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVL--------GSISQSKA  106 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l--------~~~~~~~~  106 (303)
                      |+||+|+|+.|.||+.+++.+.+. +.+|++++|++..-   .....  .-.++++|+|+++++        ++    .+
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~---~~~~~--~~~~~~~~~~~~~ll~~~~~l~~~~----~~   72 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEV-GGVLVASLDPATNV---GLVDS--FFPEAEFFTEPEAFEAYLEDLRDRG----EG   72 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHT-TCEEEEEECSSCCC---GGGGG--TCTTCEEESCHHHHHHHHHHHHHTT----CC
T ss_pred             ceEEEEECCChHHHHHHHHHHHhC-CCEEEEEEcCCHHH---HHHHh--hCCCCceeCCHHHHHHHhhhhcccC----CC
Confidence            799999998678999999999875 79999999975321   12221  123578899999998        43    68


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                      +|+|+.+|++..+.++++.|+++||||+|++| +.+.++.++|.++|+++|+.+..+.|+-
T Consensus        73 vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R  133 (312)
T 3o9z_A           73 VDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTGRRVYTVLQLR  133 (312)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEEECCGGG
T ss_pred             CcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEEeehh
Confidence            99999999999999999999999999999999 8999999999999999999888777654

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=99.54  E-value=3.3e-14  Score=135.21  Aligned_cols=144  Identities=10%  Similarity=0.049  Sum_probs=112.8

Q ss_pred             ceeEEEEcCCcHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-eeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g-v~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ++||||+|+ |++|.. ++..+. .++++|++++|++.  ..+..++   ++++ .++|+|+++++++    .++|+|+.
T Consensus        26 ~irvgiiG~-G~~~~~~~~~~~~-~~~~~lvav~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~~----~~vD~V~I   94 (361)
T 3u3x_A           26 ELRFAAVGL-NHNHIYGQVNCLL-RAGARLAGFHEKDD--ALAAEFS---AVYADARRIATAEEILED----ENIGLIVS   94 (361)
T ss_dssp             CCEEEEECC-CSTTHHHHHHHHH-HTTCEEEEEECSCH--HHHHHHH---HHSSSCCEESCHHHHHTC----TTCCEEEE
T ss_pred             CcEEEEECc-CHHHHHHHHHHhh-cCCcEEEEEEcCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEEE
Confidence            489999998 999964 666655 69999999999753  2333333   2455 5789999999974    57999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC---cHHHHHHHHHHHHhccCCCcEEE
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL---SIGSILLQQAAISASFHYKNVEI  188 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~---SiGv~ll~~~a~~~~~~~~dieI  188 (303)
                      +|++..+.+.+..|+++||||+|++| +.+.++.++|.++|+++|+.+.+..|+   +..+.-++++.+.  +..-++..
T Consensus        95 ~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~v~~~~R~~~p~~~~~k~~i~~--g~iG~i~~  172 (361)
T 3u3x_A           95 AAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILYSEHFESPATVKAGELVAA--GAIGEVVH  172 (361)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEEEECHHHHTCHHHHHHHHHHHT--TTTSSEEE
T ss_pred             eCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEechHhhCCHHHHHHHHHHHc--CCCCCeEE
Confidence            99999999999999999999999999 899999999999999999999988886   3445555555432  22345554


Q ss_pred             EEc
Q 022057          189 VES  191 (303)
Q Consensus       189 iE~  191 (303)
                      ++.
T Consensus       173 ~~~  175 (361)
T 3u3x_A          173 IVG  175 (361)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=99.54  E-value=4.4e-14  Score=137.87  Aligned_cols=150  Identities=11%  Similarity=0.055  Sum_probs=115.0

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC---eeecC----CHHHHHhccccCCC
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMS----DLTMVLGSISQSKA  106 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g---v~v~~----dl~~~l~~~~~~~~  106 (303)
                      +++||+|+|+ |.||+.+++.+...++++|++++|++.  ..+..++....++|   +++|+    |+++++++    .+
T Consensus        19 ~~~rvgiIG~-G~~g~~h~~~l~~~~~~~lvav~d~~~--~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~----~~   91 (444)
T 2ixa_A           19 KKVRIAFIAV-GLRGQTHVENMARRDDVEIVAFADPDP--YMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKD----KN   91 (444)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSCH--HHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTC----TT
T ss_pred             CCceEEEEec-CHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcC----CC
Confidence            3699999998 999999999999889999999999752  22222221000123   56788    99999974    57


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHHHHhccCC
Q 022057          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHY  183 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a~~~~~~~  183 (303)
                      +|+|+.+|++..+.+.+..|+++||||+|++| ..+.++.++|.++|+++|+.+.+..|  |..+...+.++.+.  ...
T Consensus        92 vD~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--G~i  169 (444)
T 2ixa_A           92 IDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLMALENVCYRRDVMAILNMVRK--GMF  169 (444)
T ss_dssp             CCEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEEECCGGGGCHHHHHHHHHHHT--TTT
T ss_pred             CCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEeccccCHHHHHHHHHHHc--CCC
Confidence            99999999999999999999999999999998 78999999999999999998887665  44454444444432  234


Q ss_pred             CcEEEEEcc
Q 022057          184 KNVEIVESR  192 (303)
Q Consensus       184 ~dieIiE~H  192 (303)
                      -++.-++.+
T Consensus       170 G~i~~v~~~  178 (444)
T 2ixa_A          170 GELVHGTGG  178 (444)
T ss_dssp             CSEEEEEEC
T ss_pred             CCeEEEEEE
Confidence            466666653

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=99.54  E-value=2.3e-14  Score=133.61  Aligned_cols=129  Identities=18%  Similarity=0.180  Sum_probs=103.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ++||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+.       ..|++ +.+++++++.    .++|+|+++|
T Consensus         9 ~irv~IIG~-G~iG~~~~~~l~~~~~~elvav~d~~~--~~~~-------~~g~~-~~~~~~l~~~----~~~DvViiat   73 (304)
T 3bio_A            9 KIRAAIVGY-GNIGRYALQALREAPDFEIAGIVRRNP--AEVP-------FELQP-FRVVSDIEQL----ESVDVALVCS   73 (304)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECC----------------CCTT-SCEESSGGGS----SSCCEEEECS
T ss_pred             CCEEEEECC-hHHHHHHHHHHhcCCCCEEEEEEcCCH--HHHH-------HcCCC-cCCHHHHHhC----CCCCEEEECC
Confidence            589999998 999999999999889999999999753  1111       13333 2333444331    4799999999


Q ss_pred             CchhHHHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHH
Q 022057          115 DASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS  178 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVigTT--G~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~  178 (303)
                      ++..+.+++..++++|+++++++|  +.+.++.++|.+++++.|+.++++.+|..|+.-+.++.+.
T Consensus        74 p~~~h~~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~~v~~~~~p~~~~~~~~i~~  139 (304)
T 3bio_A           74 PSREVERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAAVIASGWDPGSDSVVRTLMQ  139 (304)
T ss_dssp             CHHHHHHHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEEECSCBBTTBHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHC
Confidence            999999999999999999999986  6788899999999999999989999999999877766543

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=99.53  E-value=2.5e-14  Score=137.50  Aligned_cols=149  Identities=15%  Similarity=0.100  Sum_probs=114.6

Q ss_pred             ceeEEEEcCCcH---HHHHHHHHHHhcCCcEEEE-EEecCCCCcchhhhhcCCCCCCe---eecCCHHHHHhccc-cCCC
Q 022057           35 NIKVIINGAVKE---IGRAAVIAVTKARGMEVAG-AIDSHSVGEDIGMVCDMEQPLEI---PVMSDLTMVLGSIS-QSKA  106 (303)
Q Consensus        35 ~ikV~V~G~~Gr---MG~~i~~~i~~~~~~eLvg-~vd~~~~g~d~~~~~g~~~~~gv---~v~~dl~~~l~~~~-~~~~  106 (303)
                      ++||+|+|+ |+   ||+.++..+...++++|++ ++|++.  ..+.+++   +++|+   ++|+|+++++++.. .+.+
T Consensus        12 ~~rvgiiG~-G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~--~~a~~~a---~~~g~~~~~~~~~~~~ll~~~~~~~~~   85 (398)
T 3dty_A           12 PIRWAMVGG-GSQSQIGYIHRCAALRDNTFVLVAGAFDIDP--IRGSAFG---EQLGVDSERCYADYLSMFEQEARRADG   85 (398)
T ss_dssp             CEEEEEEEC-CTTCSSHHHHHHHHHGGGSEEEEEEECCSSH--HHHHHHH---HHTTCCGGGBCSSHHHHHHHHTTCTTC
T ss_pred             cceEEEEcC-CccchhHHHHHHHHhhCCCeEEEEEEeCCCH--HHHHHHH---HHhCCCcceeeCCHHHHHhcccccCCC
Confidence            599999998 99   9999999998888999998 667642  2233333   35677   58999999996200 0025


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCcH--HHHHHHHHHHHhccCC
Q 022057          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI--GSILLQQAAISASFHY  183 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~Si--Gv~ll~~~a~~~~~~~  183 (303)
                      +|+|+.+|++..+.+.+..|+++||||+|++| +.+.++.++|.++++++|+.+.++.|+-.  .+..++++.+.  +..
T Consensus        86 vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~--G~i  163 (398)
T 3dty_A           86 IQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIVGVTYGYAGHQLIEQAREMIAA--GEL  163 (398)
T ss_dssp             CSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEEECCGGGGSHHHHHHHHHHHT--TTT
T ss_pred             CCEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhc--CCC
Confidence            99999999999999999999999999999999 89999999999999999999988777643  33344444432  233


Q ss_pred             CcEEEEEc
Q 022057          184 KNVEIVES  191 (303)
Q Consensus       184 ~dieIiE~  191 (303)
                      -++..++.
T Consensus       164 G~i~~v~~  171 (398)
T 3dty_A          164 GDVRMVHM  171 (398)
T ss_dssp             CSEEEEEE
T ss_pred             CCeEEEEE
Confidence            45555554

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=99.53  E-value=1.1e-13  Score=129.50  Aligned_cols=137  Identities=14%  Similarity=0.138  Sum_probs=107.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHh---ccc--cCCCccE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLG---SIS--QSKARAV  109 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~---~~~--~~~~~DV  109 (303)
                      |+||+|+|+.|.||+.+++.+.+. +.+|++++|++.. .  .....  ...++++|+|++++++   .++  .+.++|+
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~-~--~~~~~--~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~   76 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDT-GNCLVSAYDINDS-V--GIIDS--ISPQSEFFTEFEFFLDHASNLKRDSATALDY   76 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHT-TCEEEEEECSSCC-C--GGGGG--TCTTCEEESSHHHHHHHHHHHTTSTTTSCCE
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhC-CCEEEEEEcCCHH-H--HHHHh--hCCCCcEECCHHHHHHhhhhhhhccCCCCcE
Confidence            799999998678999999999875 8999999997532 1  12221  1236788999999982   000  0268999


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCc--HHHHHHHHHHH
Q 022057          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQAAI  177 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~S--iGv~ll~~~a~  177 (303)
                      |+.+|++..+.+++..|+++||||+|++| +.+.++.++|.++++++|+.++.+.|+-  ....-++++.+
T Consensus        77 V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~  147 (318)
T 3oa2_A           77 VSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLYNILQLRHHQAIIALKDKVA  147 (318)
T ss_dssp             EEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHH
T ss_pred             EEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEEEEEhhhcCHHHHHHHHHHh
Confidence            99999999999999999999999999999 8999999999999999999888777643  34444455543

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=99.52  E-value=1.6e-14  Score=138.61  Aligned_cols=118  Identities=17%  Similarity=0.278  Sum_probs=100.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      ++||+|+|+ | +|+.+++++.+.+ ++||+|++|++.  ..+.+++   +++|++.|+|++++++      ++|+++..
T Consensus         7 ~~rv~VvG~-G-~g~~h~~a~~~~~~~~elvav~~~~~--~~a~~~a---~~~gv~~~~~~~~l~~------~~D~v~i~   73 (372)
T 4gmf_A            7 KQRVLIVGA-K-FGEMYLNAFMQPPEGLELVGLLAQGS--ARSRELA---HAFGIPLYTSPEQITG------MPDIACIV   73 (372)
T ss_dssp             CEEEEEECS-T-TTHHHHHTTSSCCTTEEEEEEECCSS--HHHHHHH---HHTTCCEESSGGGCCS------CCSEEEEC
T ss_pred             CCEEEEEeh-H-HHHHHHHHHHhCCCCeEEEEEECCCH--HHHHHHH---HHhCCCEECCHHHHhc------CCCEEEEE
Confidence            799999997 8 8999999988776 699999999763  3445555   4789999999999984      69999888


Q ss_pred             CCchhH----HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057          114 TDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus       114 T~p~a~----~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                      |++..+    .+.++.|+++||||+|++| ++.+|.++|.++|+++|+.+.+..|+-
T Consensus        74 ~p~~~h~~~~~~~a~~al~aGkhVl~EKP-l~~~ea~~l~~~A~~~g~~~~v~~~yr  129 (372)
T 4gmf_A           74 VRSTVAGGAGTQLARHFLARGVHVIQEHP-LHPDDISSLQTLAQEQGCCYWINTFYP  129 (372)
T ss_dssp             CC--CTTSHHHHHHHHHHHTTCEEEEESC-CCHHHHHHHHHHHHHHTCCEEEECSGG
T ss_pred             CCCcccchhHHHHHHHHHHcCCcEEEecC-CCHHHHHHHHHHHHHcCCEEEEcCccc
Confidence            876665    8999999999999999999 788999999999999999999887764

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=99.52  E-value=3.9e-14  Score=135.06  Aligned_cols=146  Identities=14%  Similarity=0.189  Sum_probs=114.2

Q ss_pred             ceeEEEEcCCcHHHHH-HH----HHHHhcCCcEEE---------EEEecCCCCcchhhhhcCCCCCCee-ecCCHHHHHh
Q 022057           35 NIKVIINGAVKEIGRA-AV----IAVTKARGMEVA---------GAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLG   99 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~-i~----~~i~~~~~~eLv---------g~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~   99 (303)
                      +|||+|+|+.|.||+. ++    +.+.+.++++|+         +++|++.  ..+..++   +.++++ +|+|++++++
T Consensus         6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~--~~a~~~a---~~~~~~~~~~~~~~ll~   80 (383)
T 3oqb_A            6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSA--EKVEALA---KRFNIARWTTDLDAALA   80 (383)
T ss_dssp             EEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSS--HHHHHHH---HHTTCCCEESCHHHHHH
T ss_pred             eeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCH--HHHHHHH---HHhCCCcccCCHHHHhc
Confidence            5999999944999998 88    888888877765         5787653  2333443   356774 7999999997


Q ss_pred             ccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHH
Q 022057          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAA  176 (303)
Q Consensus       100 ~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a  176 (303)
                      +    .++|+|+.+|++..+.+++..|+++||||++++| +.+.++.++|.++|+++|+.+.++.|  |...+..++++.
T Consensus        81 ~----~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i  156 (383)
T 3oqb_A           81 D----KNDTMFFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLANSKGVKHGTVQDKLFLPGLKKIAFLR  156 (383)
T ss_dssp             C----SSCCEEEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGSHHHHHHHHHH
T ss_pred             C----CCCCEEEECCCchHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeEEEEeccccCHHHHHHHHHH
Confidence            4    6799999999999999999999999999999999 89999999999999999999888887  445554455554


Q ss_pred             HHhccCCCcEEEEEc
Q 022057          177 ISASFHYKNVEIVES  191 (303)
Q Consensus       177 ~~~~~~~~dieIiE~  191 (303)
                      +.  +..-++.-++.
T Consensus       157 ~~--g~iG~i~~~~~  169 (383)
T 3oqb_A          157 DS--GFFGRILSVRG  169 (383)
T ss_dssp             HT--TTTSSEEEEEE
T ss_pred             Hc--CCCCCcEEEEE
Confidence            32  22345555554

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=99.51  E-value=1.3e-13  Score=135.05  Aligned_cols=148  Identities=20%  Similarity=0.118  Sum_probs=110.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh----cCC----------------CCCCeeecCCH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----DME----------------QPLEIPVMSDL   94 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~----g~~----------------~~~gv~v~~dl   94 (303)
                      ++||||+|+ |+||+.+++.+...++++|++++|++.  ..+...+    |..                ...++.+|+|+
T Consensus        23 ~IRVGIIGa-G~iG~~~~~~l~~~~~veLvAV~D~~~--era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~   99 (446)
T 3upl_A           23 PIRIGLIGA-GEMGTDIVTQVARMQGIEVGALSARRL--PNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDN   99 (446)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSSSEEEEEEECSST--HHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCH
T ss_pred             ceEEEEECC-hHHHHHHHHHHhhCCCcEEEEEEeCCH--HHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCH
Confidence            699999998 999999999999999999999999753  2222221    200                01236789999


Q ss_pred             HHHHhccccCCCccEEEEcCC-chhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHH
Q 022057           95 TMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (303)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDfT~-p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~  173 (303)
                      ++++++    .++|+||++|. |+.+.+++..|+++|||||+.+.+++.++.++|.++|+++|+.+.++..=..+.  +.
T Consensus       100 eeLL~d----~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl~~~~gdqp~~--~~  173 (446)
T 3upl_A          100 DLILSN----PLIDVIIDATGIPEVGAETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYSLGAGDEPSS--CM  173 (446)
T ss_dssp             HHHHTC----TTCCEEEECSCCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEEECTTSHHHH--HH
T ss_pred             HHHhcC----CCCCEEEEcCCChHHHHHHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCeeeecCCcchHH--HH
Confidence            999974    67999999994 678899999999999999998877777788999999999998877766544443  44


Q ss_pred             HHHHHhccCCCcEEEEEc
Q 022057          174 QAAISASFHYKNVEIVES  191 (303)
Q Consensus       174 ~~a~~~~~~~~dieIiE~  191 (303)
                      ++.+.+....+.+-....
T Consensus       174 eLv~~a~~~G~~~v~~Gk  191 (446)
T 3upl_A          174 ELIEFVSALGYEVVSAGK  191 (446)
T ss_dssp             HHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHhCCCeEEEecc
Confidence            444333222344444444

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=99.50  E-value=5.5e-14  Score=136.20  Aligned_cols=149  Identities=17%  Similarity=0.135  Sum_probs=113.2

Q ss_pred             ceeEEEEcCCcH---HHHHHHHHHHhcCCcEEEE-EEecCCCCcchhhhhcCCCCCCe---eecCCHHHHHhccc-cCCC
Q 022057           35 NIKVIINGAVKE---IGRAAVIAVTKARGMEVAG-AIDSHSVGEDIGMVCDMEQPLEI---PVMSDLTMVLGSIS-QSKA  106 (303)
Q Consensus        35 ~ikV~V~G~~Gr---MG~~i~~~i~~~~~~eLvg-~vd~~~~g~d~~~~~g~~~~~gv---~v~~dl~~~l~~~~-~~~~  106 (303)
                      ++||+|+|+ |+   ||+.++..+...++++|++ ++|++.  ..+.+++   +.+++   .+|+|++++++... ...+
T Consensus        37 ~~rvgiiG~-G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~--~~a~~~a---~~~g~~~~~~~~~~~~ll~~~~~~~~~  110 (417)
T 3v5n_A           37 RIRLGMVGG-GSGAFIGAVHRIAARLDDHYELVAGALSSTP--EKAEASG---RELGLDPSRVYSDFKEMAIREAKLKNG  110 (417)
T ss_dssp             CEEEEEESC-C--CHHHHHHHHHHHHTSCEEEEEEECCSSH--HHHHHHH---HHHTCCGGGBCSCHHHHHHHHHHCTTC
T ss_pred             cceEEEEcC-CCchHHHHHHHHHHhhCCCcEEEEEEeCCCH--HHHHHHH---HHcCCCcccccCCHHHHHhcccccCCC
Confidence            589999998 99   9999999998888999997 777642  2233333   24566   58999999996200 0035


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCcH--HHHHHHHHHHHhccCC
Q 022057          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI--GSILLQQAAISASFHY  183 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~Si--Gv~ll~~~a~~~~~~~  183 (303)
                      +|+|+.+|++..+.+.+..|+++||||+|++| +.+.++.++|.++++++|+.+.+..|+-.  .+..++++.+.  +..
T Consensus       111 vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--G~i  188 (417)
T 3v5n_A          111 IEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADESDALFVLTHNYTGYPMVRQAREMIEN--GDI  188 (417)
T ss_dssp             CSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEEEECGGGGSHHHHHHHHHHHT--TTT
T ss_pred             CcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCCHHHHHHHHHHhc--CCC
Confidence            99999999999999999999999999999999 89999999999999999999988877643  33344444431  233


Q ss_pred             CcEEEEEc
Q 022057          184 KNVEIVES  191 (303)
Q Consensus       184 ~dieIiE~  191 (303)
                      -++..++.
T Consensus       189 G~i~~v~~  196 (417)
T 3v5n_A          189 GAVRLVQM  196 (417)
T ss_dssp             CSEEEEEE
T ss_pred             CCeEEEEE
Confidence            45555554

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=99.49  E-value=1.3e-13  Score=134.52  Aligned_cols=134  Identities=12%  Similarity=0.069  Sum_probs=109.8

Q ss_pred             ceeEEEEcC---CcHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCee---ecCCHHHHHhccccCCCc
Q 022057           35 NIKVIINGA---VKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP---VMSDLTMVLGSISQSKAR  107 (303)
Q Consensus        35 ~ikV~V~G~---~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~---v~~dl~~~l~~~~~~~~~  107 (303)
                      ++||+|+|+   .|.||+.+++.+.+. ++++|++++|++.  ..+..++   +.++++   +|+|+++++++    .++
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~a---~~~g~~~~~~~~~~~~ll~~----~~v   90 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKI--ETSIATI---QRLKLSNATAFPTLESFASS----STI   90 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHTTCTTCEEESSHHHHHHC----SSC
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCH--HHHHHHH---HHcCCCcceeeCCHHHHhcC----CCC
Confidence            589999998   499999999999988 8999999999752  2222333   234554   89999999974    579


Q ss_pred             cEEEEcCCchhHHHHHHHHHHcC------CCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHHH
Q 022057          108 AVVIDFTDASTVYDNVKQATAFG------MRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAI  177 (303)
Q Consensus       108 DVvIDfT~p~a~~~~~~~al~~g------~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a~  177 (303)
                      |+|+.+|++..+.+.+..|+++|      |||+|++| +.+.++.++|.++++++|+.+++.-|  |...+.-++++.+
T Consensus        91 D~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~  169 (438)
T 3btv_A           91 DMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTIISLQGRKSPYILRAKELIS  169 (438)
T ss_dssp             SEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEEEECGGGGCHHHHHHHHHHH
T ss_pred             CEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEEEecccccCHHHHHHHHHHH
Confidence            99999999999999999999999      99999998 78999999999999999988887755  4455555555553

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=99.49  E-value=2.3e-13  Score=127.46  Aligned_cols=144  Identities=10%  Similarity=0.073  Sum_probs=112.1

Q ss_pred             ceeEEEEcCCcHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-CeeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      |+||+|+|+ |.||. .+++.+. .++++|++++|++.  ..+..++   +.+ ++++|+|+++++++    .++|+|+.
T Consensus         4 ~~rvgiiG~-G~~~~~~~~~~l~-~~~~~lvav~d~~~--~~~~~~a---~~~~~~~~~~~~~~ll~~----~~~D~V~i   72 (336)
T 2p2s_A            4 KIRFAAIGL-AHNHIYDMCQQLI-DAGAELAGVFESDS--DNRAKFT---SLFPSVPFAASAEQLITD----ASIDLIAC   72 (336)
T ss_dssp             CCEEEEECC-SSTHHHHHHHHHH-HTTCEEEEEECSCT--TSCHHHH---HHSTTCCBCSCHHHHHTC----TTCCEEEE
T ss_pred             ccEEEEECC-ChHHHHHhhhhhc-CCCcEEEEEeCCCH--HHHHHHH---HhcCCCcccCCHHHHhhC----CCCCEEEE
Confidence            589999998 99996 5777765 58999999999753  2223333   234 56789999999964    57999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC--cHH-HHHHHHHHHHhccCCCcEEE
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIG-SILLQQAAISASFHYKNVEI  188 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~--SiG-v~ll~~~a~~~~~~~~dieI  188 (303)
                      +|++..+.+.+..|+++|+||+|++| ..+.++.++|.++++++|+.+++.-|+  ... ..-++++.+.  ...-++.-
T Consensus        73 ~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~~~~~i~~--g~iG~i~~  150 (336)
T 2p2s_A           73 AVIPCDRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFAVYFNERINVDSALFAGELVQR--GEIGRVIQ  150 (336)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEEECCTTTTTCHHHHHHHHHHHT--TTTSSEEE
T ss_pred             eCChhhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccCcHHHHHHHHHHhC--CCCCceEE
Confidence            99999999999999999999999998 789999999999999999998887775  334 5556665532  22335555


Q ss_pred             EEc
Q 022057          189 VES  191 (303)
Q Consensus       189 iE~  191 (303)
                      ++.
T Consensus       151 v~~  153 (336)
T 2p2s_A          151 TMG  153 (336)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=99.48  E-value=1.3e-13  Score=128.68  Aligned_cols=133  Identities=11%  Similarity=0.087  Sum_probs=104.9

Q ss_pred             CceeEEEEcCCcHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEE
Q 022057           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ||+||+|+|+ |+||+ .+++.+.+.++++|+ ++|++.  ..+..++   +.++++. +.|..++++     .++|+|+
T Consensus         1 m~~~igiIG~-G~ig~~~~~~~l~~~~~~~l~-v~d~~~--~~~~~~a---~~~g~~~~~~~~~~~l~-----~~~D~V~   68 (323)
T 1xea_A            1 MSLKIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNP--KVLGTLA---TRYRVSATCTDYRDVLQ-----YGVDAVM   68 (323)
T ss_dssp             -CEEEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCH--HHHHHHH---HHTTCCCCCSSTTGGGG-----GCCSEEE
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHhCCCceEE-EEeCCH--HHHHHHH---HHcCCCccccCHHHHhh-----cCCCEEE
Confidence            6799999998 99998 599999888899999 998752  2223333   2456653 445455553     5899999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHHHH
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAIS  178 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a~~  178 (303)
                      .+|+|..+.+.+..++++|++|++++| +.+.++.++|.++++++|+.++.+-|  |......++++.+.
T Consensus        69 i~tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~  138 (323)
T 1xea_A           69 IHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGFNRRHIPLYNQHLSELAQ  138 (323)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEECGGGCCHHHHHHCHHHHH
T ss_pred             EECCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEEeeccccCHHHHHHHHHHhc
Confidence            999999999999999999999999998 78889999999999999998887765  46666666666543

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=99.40  E-value=4e-13  Score=126.87  Aligned_cols=162  Identities=14%  Similarity=0.116  Sum_probs=115.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc--------CCcEEEEEEecCCCC---cchhhhhcCCCCCCeeecC--CHHHHHhcc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA--------RGMEVAGAIDSHSVG---EDIGMVCDMEQPLEIPVMS--DLTMVLGSI  101 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~--------~~~eLvg~vd~~~~g---~d~~~~~g~~~~~gv~v~~--dl~~~l~~~  101 (303)
                      |+||+|+|+ |.||+.+++.+.+.        ++++|+++.|++..-   .+...+... .....++++  |+++++++ 
T Consensus         2 mirvgIiG~-G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~-~~~~~~~~~~~d~~~ll~~-   78 (327)
T 3do5_A            2 MIKIAIVGF-GTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRM-KRETGMLRDDAKAIEVVRS-   78 (327)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHH-HHHHSSCSBCCCHHHHHHH-
T ss_pred             cEEEEEEec-cHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhh-hccCccccCCCCHHHHhcC-
Confidence            799999998 99999999999887        899999999975210   011111110 000123455  99999975 


Q ss_pred             ccCCCccEEEEcCCchhH----HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHH
Q 022057          102 SQSKARAVVIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI  177 (303)
Q Consensus       102 ~~~~~~DVvIDfT~p~a~----~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~  177 (303)
                         .++|+|||+|+++.+    .+++..|+++|+|||++..+.-..+.++|.++|+++|+.+++-++..-|.-++..+-+
T Consensus        79 ---~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~~ea~v~~g~Pii~~l~~  155 (327)
T 3do5_A           79 ---ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGAMPVVKLAKR  155 (327)
T ss_dssp             ---SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEECGGGSSTTSCCHHHHHT
T ss_pred             ---CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEEEEEEeeecCHHHHHHHH
Confidence               689999999988776    8999999999999999977654467889999999999999998888888766666554


Q ss_pred             HhccCCCcEEEEEccCCCCCCCcHHHHHHHHHH
Q 022057          178 SASFHYKNVEIVESRPNARDFPSPDATQIANNL  210 (303)
Q Consensus       178 ~~~~~~~dieIiE~Hh~K~DaPSGTA~~l~~~i  210 (303)
                      .++.  ..+.-++-      .-|||.--+-..+
T Consensus       156 ~l~~--~~I~~I~G------IlnGT~nyilt~m  180 (327)
T 3do5_A          156 YLAL--CEIESVKG------IFNGTCNYILSRM  180 (327)
T ss_dssp             TTTT--SCEEEEEE------ECCHHHHHHHHHH
T ss_pred             HhhC--CCccEEEE------EECCCcCcchhhc
Confidence            4432  33333331      1267765544444

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=99.39  E-value=3e-12  Score=116.74  Aligned_cols=199  Identities=16%  Similarity=0.078  Sum_probs=132.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -|||+++|+ |.||+.+++.   . ++||+++++ ++.    ++       +++.+++|+++++      .++|+||+++
T Consensus        12 ~~rV~i~G~-GaIG~~v~~~---~-~leLv~v~~-~k~----ge-------lgv~a~~d~d~ll------a~pD~VVe~A   68 (253)
T 1j5p_A           12 HMTVLIIGM-GNIGKKLVEL---G-NFEKIYAYD-RIS----KD-------IPGVVRLDEFQVP------SDVSTVVECA   68 (253)
T ss_dssp             CCEEEEECC-SHHHHHHHHH---S-CCSEEEEEC-SSC----CC-------CSSSEECSSCCCC------TTCCEEEECS
T ss_pred             cceEEEECc-CHHHHHHHhc---C-CcEEEEEEe-ccc----cc-------cCceeeCCHHHHh------hCCCEEEECC
Confidence            489999997 9999999997   4 999999998 332    21       2667788999988      3899999999


Q ss_pred             CchhHHHHHHHHHHcCCCeEEeCCCC--CHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcEEEEEc-
Q 022057          115 DASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES-  191 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVigTTG~--~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~-  191 (303)
                      .++++.+++..+|++|+++|+..+|.  +++..++|+++|+++|.. ++.|.-++|..-..++++   .....+.++=+ 
T Consensus        69 ~~~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~-l~vpSGAi~GlD~l~aa~---g~l~~V~~~t~K  144 (253)
T 1j5p_A           69 SPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPAR-VFFPSGAIGGLDVLSSIK---DFVKNVRIETIK  144 (253)
T ss_dssp             CHHHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCE-EECCCTTCCCHHHHHHHG---GGEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCe-EEecCCcccchhHHHHhc---CCccEEEEEEeC
Confidence            99999999999999999999988873  556678999999999988 555666776622222222   22334444433 


Q ss_pred             cCC--CCC--CC----cHHHHHHHHHHHhcCcccccCcccccccccCccccCCceeEEEEEcCCCce-eEEEEEccCCeE
Q 022057          192 RPN--ARD--FP----SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPS-STTVYFSRPGEV  262 (303)
Q Consensus       192 Hh~--K~D--aP----SGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~ihS~R~g~ivg-~H~V~f~~~~E~  262 (303)
                      |..  +.+  .|    +|||.   |++..++++.+..-....  +-|-+  ...+.+-+-  |++-+ .|+|...|++.+
T Consensus       145 ~P~~~~~~l~e~~~~feG~ar---eA~~~fP~N~NVaaa~aL--A~G~d--~t~v~l~aD--P~~~~n~H~I~v~g~~g~  215 (253)
T 1j5p_A          145 PPKSLGLDLKGKTVVFEGSVE---EASKLFPRNINVASTIGL--IVGFE--KVKVTIVAD--PAMDHNIHIVRISSAIGN  215 (253)
T ss_dssp             CGGGGTCCCSSCEEEEEECHH---HHHHHCSSSCHHHHHHHH--HHCGG--GEEEEEEEC--TTCSSCEEEEEEEESSCE
T ss_pred             ChHHhCcccccceEEEEEcHH---HHHHHcCccHHHHHHHHH--hcCCC--ccEEEEEEc--CCCCCcEEEEEEEecCcE
Confidence            332  222  23    89998   444444432221100001  11100  012333332  44444 799999999999


Q ss_pred             EEEEEec
Q 022057          263 YSIKHDI  269 (303)
Q Consensus       263 iel~H~a  269 (303)
                      ++++-+-
T Consensus       216 ~~~~~~~  222 (253)
T 1j5p_A          216 YEFKIEN  222 (253)
T ss_dssp             EEEEECC
T ss_pred             EEEEEec
Confidence            8887543

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=99.38  E-value=2.8e-13  Score=127.82  Aligned_cols=161  Identities=20%  Similarity=0.185  Sum_probs=114.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc------CCcEEEEEEecCCC--C--cchhhhhcCCCCCC-ee--ecCCHHHHHhcc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA------RGMEVAGAIDSHSV--G--EDIGMVCDMEQPLE-IP--VMSDLTMVLGSI  101 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~------~~~eLvg~vd~~~~--g--~d~~~~~g~~~~~g-v~--v~~dl~~~l~~~  101 (303)
                      ++||+|+|+ |+||+.+++.+.+.      ++++|+++.|++..  .  .|...+.....+.+ ++  .+ |+++++.+ 
T Consensus         4 ~irVgIiG~-G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l~~-   80 (325)
T 3ing_A            4 EIRIILMGT-GNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SGPEDLMG-   80 (325)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGGTT-
T ss_pred             eEEEEEEcC-cHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CHHHHhcC-
Confidence            599999998 99999999999876      78999999997521  1  12222111000111 11  23 66777764 


Q ss_pred             ccCCCccEEEEcCCch----hHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHH
Q 022057          102 SQSKARAVVIDFTDAS----TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI  177 (303)
Q Consensus       102 ~~~~~~DVvIDfT~p~----a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~  177 (303)
                         .++|||||+|++.    ...+++..|+++|+|||++++++..++.++|.++|+++|+.+++-++++-|.-++..+-+
T Consensus        81 ---~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~giPii~~l~~  157 (325)
T 3ing_A           81 ---EAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGGVPLFSVLDY  157 (325)
T ss_dssp             ---SCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCCHHHHHH
T ss_pred             ---CCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeecccCHHHHHHHH
Confidence               6899999999764    347999999999999999988776688999999999999999999999988877666555


Q ss_pred             HhccCCCcEEEEEccCCCCCCCcHHHHHHHHH
Q 022057          178 SASFHYKNVEIVESRPNARDFPSPDATQIANN  209 (303)
Q Consensus       178 ~~~~~~~dieIiE~Hh~K~DaPSGTA~~l~~~  209 (303)
                      .++  ...+.-++-      .-|||.--+-..
T Consensus       158 ~l~--g~~I~~i~G------i~nGT~nyil~~  181 (325)
T 3ing_A          158 SIL--PSKVKRFRG------IVSSTINYVIRN  181 (325)
T ss_dssp             TCT--TCCEEEEEE------ECCHHHHHHHHH
T ss_pred             Hhh--CCCeeEEEE------EEEeeeeEEeec
Confidence            453  244554442      145665444333

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=99.37  E-value=8.8e-13  Score=129.24  Aligned_cols=134  Identities=14%  Similarity=0.166  Sum_probs=108.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHh---------cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTK---------ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~---------~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~  105 (303)
                      ++||+|+|+ |.||+.+++.+.+         .++++|++++|++.  .....+.     .+.+.++|+++++++    .
T Consensus        10 ~irIgIIG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~--~~~~~~~-----~~~~~~~d~~ell~d----~   77 (444)
T 3mtj_A           10 PIHVGLLGL-GTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNL--DKAEALA-----GGLPLTTNPFDVVDD----P   77 (444)
T ss_dssp             CEEEEEECC-HHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCH--HHHHHHH-----TTCCEESCTHHHHTC----T
T ss_pred             cccEEEECC-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCH--HHhhhhc-----ccCcccCCHHHHhcC----C
Confidence            489999998 9999999987764         27899999999753  1222222     135678999999974    6


Q ss_pred             CccEEEEcCCc-hhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhc
Q 022057          106 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS  180 (303)
Q Consensus       106 ~~DVvIDfT~p-~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~  180 (303)
                      ++|+|+++|.+ +.+.+++..|+++|+|||+++++++.++.++|.++|+++|+.+.+-++..-|.-++..+-+.++
T Consensus        78 diDvVve~tp~~~~h~~~~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~giPii~~LrelL~  153 (444)
T 3mtj_A           78 EIDIVVELIGGLEPARELVMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGGIPIIKALREGLT  153 (444)
T ss_dssp             TCCEEEECCCSSTTHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCHHHHHHTTTT
T ss_pred             CCCEEEEcCCCchHHHHHHHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeCChHHHHHHHHHHh
Confidence            89999999985 8999999999999999999999887888899999999999998887777766666655554443

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=99.33  E-value=1.2e-12  Score=123.65  Aligned_cols=140  Identities=17%  Similarity=0.109  Sum_probs=104.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC-------CcEEEEEEecCCC-Cc---chhhhhcCCCCCCee-ecC---CHHHHHh
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR-------GMEVAGAIDSHSV-GE---DIGMVCDMEQPLEIP-VMS---DLTMVLG   99 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~-------~~eLvg~vd~~~~-g~---d~~~~~g~~~~~gv~-v~~---dl~~~l~   99 (303)
                      ++||+|+|+ |.||+.+++.+.+.+       +++|+++.|++.. ..   +..++.......+++ +++   |+++++ 
T Consensus         6 ~irvgIiG~-G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll-   83 (331)
T 3c8m_A            6 TINLSIFGL-GNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEAL-   83 (331)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHH-
T ss_pred             EEeEEEEec-CHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHh-
Confidence            489999998 999999999998766       6999999997531 01   111111000012342 456   899998 


Q ss_pred             ccccCCCccEEEEcCCch----hHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH
Q 022057          100 SISQSKARAVVIDFTDAS----TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (303)
Q Consensus       100 ~~~~~~~~DVvIDfT~p~----a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~  175 (303)
                      +    .++|+|||+|++.    .+.+++..|+++|||||+.......++.++|.++|+++|+.+.+.++..-|.-++..+
T Consensus        84 ~----~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~~ea~vg~giPii~~l  159 (331)
T 3c8m_A           84 A----RDFDIVVDATPASADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIRYEATVAGGVPLFSFI  159 (331)
T ss_dssp             H----SSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCCHHHH
T ss_pred             C----CCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEEEEeecccccHHHHHH
Confidence            4    6899999999774    8899999999999999986544335678999999999999999988888886555555


Q ss_pred             HHHhc
Q 022057          176 AISAS  180 (303)
Q Consensus       176 a~~~~  180 (303)
                      -+.++
T Consensus       160 ~~~l~  164 (331)
T 3c8m_A          160 DYSVL  164 (331)
T ss_dssp             HHHST
T ss_pred             HHHhh
Confidence            44443

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*

Probab=99.31  E-value=9.1e-12  Score=117.85  Aligned_cols=123  Identities=16%  Similarity=0.231  Sum_probs=100.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHH--HHhcCCcEEEEEEecCCCC--cchhhhhcCCCCCCeeecCCHHHHHhccccCC-CccE
Q 022057           35 NIKVIINGAVKEIGRAAVIA--VTKARGMEVAGAIDSHSVG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK-ARAV  109 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~--i~~~~~~eLvg~vd~~~~g--~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~-~~DV  109 (303)
                      .+||.|.|++|||++.+++.  +.++++.++|+.+++...|  ++..  .|. ...|+|+|.+++++.+.    . ++|+
T Consensus        10 ~tkviV~G~~Gk~~~~ml~~~~~~~r~~~~vVagV~P~~~g~~~~v~--~G~-~~~Gvpvy~sv~ea~~~----~p~~Dl   82 (334)
T 3mwd_B           10 HTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFY--WGH-KEILIPVFKNMADAMRK----HPEVDV   82 (334)
T ss_dssp             TCCEEEESCCHHHHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEE--ETT-EEEEEEEESSHHHHHHH----CTTCCE
T ss_pred             CCeEEEECCchHHHHHHHHhcccccCCCceEEEEEcCCCCCccceEe--ccC-ccCCceeeCCHHHHhhc----CCCCcE
Confidence            58999999999999988887  6777899999999986532  3331  232 24689999999998752    2 5899


Q ss_pred             EEEcCCchhHHHHHHHHHH-cCCCeEEe-CCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057          110 VIDFTDASTVYDNVKQATA-FGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~-~g~~vVig-TTG~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      +|+|++|..+.+.+..++. +|++.|+. |+|+++++.++|.++|+++++. ++.||-
T Consensus        83 aVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~r-liGPNc  139 (334)
T 3mwd_B           83 LINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVT-IIGPAT  139 (334)
T ss_dssp             EEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCE-EECSSC
T ss_pred             EEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEccCC
Confidence            9999999998887776666 99987777 8899998889999999999985 778883

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=99.22  E-value=4.7e-11  Score=113.98  Aligned_cols=166  Identities=16%  Similarity=0.150  Sum_probs=111.3

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCC-CeeecCCHHHHHhcc--------
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSI--------  101 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~--------  101 (303)
                      .|+||+|+|+ |.||+.+++.+.+.+   +++|+++.|+..  .   .+.   ..+ |++.++++++++++.        
T Consensus         3 k~i~vgIiG~-G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~--~---~~~---~~~~gi~~~~~~~e~l~~~~~~~~did   73 (358)
T 1ebf_A            3 KVVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLVLLAEAER--S---LIS---KDFSPLNVGSDWKAALAASTTKTLPLD   73 (358)
T ss_dssp             SEEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEEEEECSSB--E---EEC---SSCSCCSCTTCHHHHHHTCCCBCCCHH
T ss_pred             ceEEEEEEec-CHHHHHHHHHHHhcCCCCCEEEEEEEECCh--h---hhc---cccCCCCccccHHHHHhcccCCCCCHH
Confidence            4699999998 999999999998876   689999998642  1   111   233 566667777777520        


Q ss_pred             ------ccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEE--eCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHH
Q 022057          102 ------SQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV--YVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (303)
Q Consensus       102 ------~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVi--gTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll  172 (303)
                            .....+|||||+|....+.+....|+++|||||+  .++ ..+.++.++|. +|+++|+.+.+-++..-|.-++
T Consensus        74 ~v~e~~~~~~~~DvVV~~t~~~~~a~~~~~AL~aGkhVVtaNkkpla~~~~~~~eL~-~A~~~gv~~~~Ea~vg~giPii  152 (358)
T 1ebf_A           74 DLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALF-SNKPTNGFVYHEATVGAGLPII  152 (358)
T ss_dssp             HHHHHHTTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHT-CCCTTCCCEECGGGTTTTSSCH
T ss_pred             HHHHHhhhccCCcEEEEcCCChHHHHHHHHHHHCCCeEEecCcccccCCHHHHHHHH-HHHHcCCEEEEccccccCCcHH
Confidence                  0001238999999777676777899999999999  444 56668889999 9999999988877666664334


Q ss_pred             HHHHHHhccCCCcEEEEEc----------cC-C---CCCCCcHHHHHHHHHH
Q 022057          173 QQAAISASFHYKNVEIVES----------RP-N---ARDFPSPDATQIANNL  210 (303)
Q Consensus       173 ~~~a~~~~~~~~dieIiE~----------Hh-~---K~DaPSGTA~~l~~~i  210 (303)
                      ..+-+.+.. ...+.-++-          +. .   ....|-.+|++-|+.+
T Consensus       153 ~~l~~~l~~-G~~I~~I~GIlnGT~nyil~~m~~~~~~g~~f~~~l~eAq~~  203 (358)
T 1ebf_A          153 SFLREIIQT-GDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKL  203 (358)
T ss_dssp             HHHHHHHHH-TCCEEEEEEECCHHHHHHHHHHSCSSCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCeEEEEEEEeecceeeecccccccccCCCHHHHHHHHHHc
Confidence            333333311 123433332          22 1   4455666666666654

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=99.14  E-value=1.3e-10  Score=109.76  Aligned_cols=97  Identities=21%  Similarity=0.246  Sum_probs=76.4

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---cCC------------CCCCeeecCCHHHHH
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DME------------QPLEIPVMSDLTMVL   98 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---g~~------------~~~gv~v~~dl~~~l   98 (303)
                      ||+||||+|+ |+||+.+++.+.+.|+++|+++.|++.  +.+..++   |+.            ...++.++.|+++++
T Consensus         1 M~irVgIiG~-G~iG~~~~r~l~~~~~~elvav~d~~~--~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~   77 (334)
T 2czc_A            1 MKVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKP--DFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL   77 (334)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSC--SHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred             CCcEEEEEeE-hHHHHHHHHHHhcCCCCEEEEEEcCCH--HHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhc
Confidence            5799999998 999999999999999999999999642  2222222   110            001235678899988


Q ss_pred             hccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCC
Q 022057           99 GSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (303)
Q Consensus        99 ~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG  139 (303)
                            .++|+|+++|++..+.+.+..++++|++|++.++.
T Consensus        78 ------~~vDvV~~aTp~~~h~~~a~~~l~aGk~Vi~sap~  112 (334)
T 2czc_A           78 ------EKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGE  112 (334)
T ss_dssp             ------TTCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTS
T ss_pred             ------cCCCEEEECCCccccHHHHHHHHHcCCceEeeccc
Confidence                  37999999999999999999999999999987653

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=99.11  E-value=6.7e-10  Score=103.81  Aligned_cols=114  Identities=13%  Similarity=0.161  Sum_probs=94.7

Q ss_pred             eEEEE-cCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           37 KVIIN-GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        37 kV~V~-G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .++|+ |++|++|+.+++.+.+ .++++++.+++...|.+         -.|+++|.+++++.++    .++|++|.|++
T Consensus        15 siaVV~Gasg~~G~~~~~~l~~-~G~~~v~~VnP~~~g~~---------i~G~~vy~sl~el~~~----~~vD~avI~vP   80 (305)
T 2fp4_A           15 TKVICQGFTGKQGTFHSQQALE-YGTNLVGGTTPGKGGKT---------HLGLPVFNTVKEAKEQ----TGATASVIYVP   80 (305)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-HTCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEECCC
T ss_pred             cEEEEECCCCCHHHHHHHHHHH-CCCcEEEEeCCCcCcce---------ECCeeeechHHHhhhc----CCCCEEEEecC
Confidence            46677 9999999999998875 57888888887532211         3579999999999742    27999999999


Q ss_pred             chhHHHHHHHHHHcCCCe-EEeCCCCCHHHHHHHHHHhhhc-CCeEEEcCCC
Q 022057          116 ASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKA-SMGCLIAPTL  165 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~v-VigTTG~~~e~~~~L~~~a~~~-~i~vv~a~N~  165 (303)
                      |+.+.+.++.|++.|++. |+-++|++.++..++.++++++ |+. ++.||.
T Consensus        81 ~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~-liGPnc  131 (305)
T 2fp4_A           81 PPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR-LIGPNC  131 (305)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE-EECSSS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcE-EEeCCC
Confidence            999999999999999988 6778899987778999999998 887 677885

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=99.03  E-value=2e-10  Score=108.65  Aligned_cols=124  Identities=14%  Similarity=0.131  Sum_probs=93.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC--------CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~--------~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (303)
                      ++||+|+|+ |.||+.+++.+.+.+        +++|+++.|++..  +...+     . ....++|+++++       +
T Consensus         3 ~irvgIiG~-G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~--~~~~~-----~-~~~~~~d~~~ll-------~   66 (332)
T 2ejw_A            3 ALKIALLGG-GTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPR--KPRAI-----P-QELLRAEPFDLL-------E   66 (332)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTT--SCCSS-----C-GGGEESSCCCCT-------T
T ss_pred             eeEEEEEcC-CHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHH--Hhhcc-----C-cccccCCHHHHh-------C
Confidence            589999998 999999999998877        7999999997531  11111     0 123577888775       5


Q ss_pred             ccEEEEcCCch-hHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHH
Q 022057          107 RAVVIDFTDAS-TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (303)
Q Consensus       107 ~DVvIDfT~p~-a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a  176 (303)
                      +|+||++|.+. .+.++++.|+++|||||+.......++.++|.++|+++  .+++.++..-|.-++..+-
T Consensus        67 iDvVve~t~~~~~a~~~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~--~~~~Ea~vg~giPii~~l~  135 (332)
T 2ejw_A           67 ADLVVEAMGGVEAPLRLVLPALEAGIPLITANKALLAEAWESLRPFAEEG--LIYHEASVMAGTPALSFLE  135 (332)
T ss_dssp             CSEEEECCCCSHHHHHHHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT--CEECGGGTTTTSSSHHHHH
T ss_pred             CCEEEECCCCcHHHHHHHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC--CeEEEEEcccCCHHHHHHH
Confidence            89999999755 56889999999999999964433336788999999986  7788887777754444443

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.92  E-value=4.9e-10  Score=106.39  Aligned_cols=143  Identities=22%  Similarity=0.282  Sum_probs=89.4

Q ss_pred             eecccccccccceEEEeecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee
Q 022057           11 RMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV   90 (303)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v   90 (303)
                      |.+|...|++.+            +|||+|+|| |+||+.+++.+.++.++.   ++|...  +.+..+........+.+
T Consensus         4 ~~~~~~~~~~g~------------~mkilvlGa-G~vG~~~~~~L~~~~~v~---~~~~~~--~~~~~~~~~~~~~~~d~   65 (365)
T 3abi_A            4 KVHHHHHHIEGR------------HMKVLILGA-GNIGRAIAWDLKDEFDVY---IGDVNN--ENLEKVKEFATPLKVDA   65 (365)
T ss_dssp             ------------------------CCEEEEECC-SHHHHHHHHHHTTTSEEE---EEESCH--HHHHHHTTTSEEEECCT
T ss_pred             ccccccccccCC------------ccEEEEECC-CHHHHHHHHHHhcCCCeE---EEEcCH--HHHHHHhccCCcEEEec
Confidence            445556666543            579999999 999999999987655433   334321  11111111000111111


Q ss_pred             --cCCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHH
Q 022057           91 --MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (303)
Q Consensus        91 --~~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiG  168 (303)
                        .+++++++      .++|+||...+|..+...++.|+++|+|+|- ++. ..++..+|.+.|+++|+.++...-|..|
T Consensus        66 ~d~~~l~~~~------~~~DvVi~~~p~~~~~~v~~~~~~~g~~yvD-~s~-~~~~~~~l~~~a~~~g~~~i~~~G~~PG  137 (365)
T 3abi_A           66 SNFDKLVEVM------KEFELVIGALPGFLGFKSIKAAIKSKVDMVD-VSF-MPENPLELRDEAEKAQVTIVFDAGFAPG  137 (365)
T ss_dssp             TCHHHHHHHH------TTCSEEEECCCGGGHHHHHHHHHHHTCEEEE-CCC-CSSCGGGGHHHHHHTTCEEECCCBTTTB
T ss_pred             CCHHHHHHHH------hCCCEEEEecCCcccchHHHHHHhcCcceEe-eec-cchhhhhhhhhhccCCceeeecCCCCCc
Confidence              22344555      4789999999999999999999999999885 343 3345567899999999999999999999


Q ss_pred             H-HHH-HHHHHHh
Q 022057          169 S-ILL-QQAAISA  179 (303)
Q Consensus       169 v-~ll-~~~a~~~  179 (303)
                      + +++ .++.+.+
T Consensus       138 ~~~~~a~~~~~~~  150 (365)
T 3abi_A          138 LSNILMGRIFQEL  150 (365)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHhc
Confidence            8 444 4444443

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=98.91  E-value=3.8e-09  Score=98.96  Aligned_cols=100  Identities=21%  Similarity=0.237  Sum_probs=76.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ++||+|+|+ |.||+.+++.+.+ .+++++++++|++.. .+...++   ..++++. +++++++++.- ...++|+|++
T Consensus         4 ~irVaIIG~-G~iG~~~~~~l~~~~~~~elvav~d~~~~-~~~~~~a---~~~g~~~~~~~~e~ll~~~-~~~~iDvV~~   77 (312)
T 1nvm_B            4 KLKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDAA-SDGLARA---QRMGVTTTYAGVEGLIKLP-EFADIDFVFD   77 (312)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCTT-CHHHHHH---HHTTCCEESSHHHHHHHSG-GGGGEEEEEE
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHhhCcCeEEEEEEeCChh-hhHHHHH---HHcCCCcccCCHHHHHhcc-CCCCCcEEEE
Confidence            599999997 9999999999866 899999999997531 1112222   2455553 56788887510 0036899999


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      +|.++.+.+++..++++  |++|++.++-+
T Consensus        78 atp~~~h~~~a~~al~a~~Gk~Vi~ekp~~  107 (312)
T 1nvm_B           78 ATSASAHVQNEALLRQAKPGIRLIDLTPAA  107 (312)
T ss_dssp             CSCHHHHHHHHHHHHHHCTTCEEEECSTTC
T ss_pred             CCChHHHHHHHHHHHHhCCCCEEEEcCccc
Confidence            99999999999999999  99999999853

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=98.84  E-value=9.4e-09  Score=97.35  Aligned_cols=93  Identities=16%  Similarity=0.229  Sum_probs=70.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc---------------CCCCCCeeecCCHHHHHh
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD---------------MEQPLEIPVMSDLTMVLG   99 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g---------------~~~~~gv~v~~dl~~~l~   99 (303)
                      |+||||+|+ |+||+.+++.+.++|++||+++.|...  ......+.               + ...++++.++++++++
T Consensus         1 ~ikVgIiGa-G~iG~~~~r~L~~~p~~elvav~d~~~--~~~~~~a~~~g~~~~~~~~~~~~~-~~~~v~v~~~~e~l~~   76 (340)
T 1b7g_O            1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSP--NYEAFIAHRRGIRIYVPQQSIKKF-EESGIPVAGTVEDLIK   76 (340)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSC--SHHHHHHHHTTCCEECCGGGHHHH-HTTTCCCCCCHHHHHH
T ss_pred             CeEEEEEec-CHHHHHHHHHHHcCCCCEEEEEEcCCh--HHHHHHHHhcCcceecCcCHHHHh-cccccccccCHhHhhc
Confidence            589999999 999999999999999999999998642  11111110               0 1233444455556552


Q ss_pred             ccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (303)
Q Consensus       100 ~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT  137 (303)
                            ++|+|+++|.+....++...++++|+++|.-+
T Consensus        77 ------~vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~s  108 (340)
T 1b7g_O           77 ------TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQG  108 (340)
T ss_dssp             ------HCSEEEECCSTTHHHHHHHHHHHTTCEEEECT
T ss_pred             ------CCCEEEECCCCchhHHHHHHHHHcCCeEEEeC
Confidence                  68999999999999999999999999988754

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.84  E-value=2.7e-08  Score=82.80  Aligned_cols=112  Identities=16%  Similarity=0.114  Sum_probs=89.0

Q ss_pred             eeEEEEcCC---cHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      .+|+|+|++   |+||+.+++.+.+ .++++. .+++.  +   .+      -.|+++|.|++++.      ..+|++|-
T Consensus        23 ~~iaVVGas~~~g~~G~~~~~~l~~-~G~~v~-~Vnp~--~---~~------i~G~~~y~sl~~l~------~~vDlvvi   83 (144)
T 2d59_A           23 KKIALVGASPKPERDANIVMKYLLE-HGYDVY-PVNPK--Y---EE------VLGRKCYPSVLDIP------DKIEVVDL   83 (144)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHH-TTCEEE-EECTT--C---SE------ETTEECBSSGGGCS------SCCSEEEE
T ss_pred             CEEEEEccCCCCCchHHHHHHHHHH-CCCEEE-EECCC--C---Ce------ECCeeccCCHHHcC------CCCCEEEE
Confidence            689999997   7999999998774 677733 33433  1   11      24789999999885      47999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHH
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~l  171 (303)
                      |++++.+.+.++.|.+.|++.++-++|...   +++.++++++|++ ++.|| ++|+..
T Consensus        84 ~vp~~~~~~vv~~~~~~gi~~i~~~~g~~~---~~l~~~a~~~Gi~-vvGpn-c~gv~~  137 (144)
T 2d59_A           84 FVKPKLTMEYVEQAIKKGAKVVWFQYNTYN---REASKKADEAGLI-IVANR-CMMREH  137 (144)
T ss_dssp             CSCHHHHHHHHHHHHHHTCSEEEECTTCCC---HHHHHHHHHTTCE-EEESC-CHHHHH
T ss_pred             EeCHHHHHHHHHHHHHcCCCEEEECCCchH---HHHHHHHHHcCCE-EEcCC-chhhcc
Confidence            999999999999999999999988888753   4688889999998 56676 778754

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.81  E-value=4e-08  Score=81.35  Aligned_cols=112  Identities=14%  Similarity=0.171  Sum_probs=87.3

Q ss_pred             ceeEEEEcCC---cHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      +.+|+|+|++   |+||+.+++.+.+ .+++ +..+++..     .+      -.|+++|.|++++.      ..+|++|
T Consensus        14 p~~IavIGaS~~~g~~G~~~~~~L~~-~G~~-V~~vnp~~-----~~------i~G~~~~~s~~el~------~~vDlvi   74 (138)
T 1y81_A           14 FRKIALVGASKNPAKYGNIILKDLLS-KGFE-VLPVNPNY-----DE------IEGLKCYRSVRELP------KDVDVIV   74 (138)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHH-TTCE-EEEECTTC-----SE------ETTEECBSSGGGSC------TTCCEEE
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHHHH-CCCE-EEEeCCCC-----Ce------ECCeeecCCHHHhC------CCCCEEE
Confidence            4789999976   9999999999875 5787 33355431     11      24789999999886      4799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHH
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~  170 (303)
                      -+.+++.+.+.++.|++.|+..++-.++..   .+++.+++++.|+. ++.|| ++|+.
T Consensus        75 i~vp~~~v~~v~~~~~~~g~~~i~~~~~~~---~~~l~~~a~~~Gi~-~igpn-c~g~~  128 (138)
T 1y81_A           75 FVVPPKVGLQVAKEAVEAGFKKLWFQPGAE---SEEIRRFLEKAGVE-YSFGR-CIMVE  128 (138)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCEEEECTTSC---CHHHHHHHHHHTCE-EECSC-CHHHH
T ss_pred             EEeCHHHHHHHHHHHHHcCCCEEEEcCccH---HHHHHHHHHHCCCE-EEcCC-cceEE
Confidence            999999999999999999998777666432   24678888999998 56777 78874

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=98.80  E-value=1.3e-08  Score=96.23  Aligned_cols=96  Identities=20%  Similarity=0.228  Sum_probs=72.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC---------------CCCCeeecCCHHHHHh
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME---------------QPLEIPVMSDLTMVLG   99 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~---------------~~~gv~v~~dl~~~l~   99 (303)
                      |+||+|+|+ |+||+.+++.+.++|+++|+++.|...  ......++..               ...++.+..+.++++.
T Consensus         1 mikVgIiGa-G~iG~~l~r~L~~~~~~elvav~d~~~--~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~   77 (337)
T 1cf2_P            1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRP--DFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD   77 (337)
T ss_dssp             CEEEEEECC-STTHHHHHHHHHTSSSEEEEEEEESSC--SHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH
T ss_pred             CeEEEEEeE-CHHHHHHHHHHHcCCCcEEEEEEcCCh--hHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhc
Confidence            689999999 999999999999899999999988642  1111111100               0113344446677763


Q ss_pred             ccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCC
Q 022057          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (303)
Q Consensus       100 ~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG  139 (303)
                            ++|+|+++|.+..+.+++..++++|++||+.++.
T Consensus        78 ------~vDvV~~atp~~~~~~~a~~~l~aG~~VId~sp~  111 (337)
T 1cf2_P           78 ------EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGE  111 (337)
T ss_dssp             ------TCSEEEECCSTTHHHHHHHHHHHHTCCEEECTTS
T ss_pred             ------CCCEEEECCCchhhHHHHHHHHHcCCEEEEecCC
Confidence                  7999999999999999999999999998887766

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=98.78  E-value=1.2e-08  Score=97.02  Aligned_cols=119  Identities=13%  Similarity=0.122  Sum_probs=95.5

Q ss_pred             CceeEEEEcCCcHHHHHHHHHH---Hhc-CCcEEEEEEecCCCCcchhhhh-cCCCCCCeeecCCHHHHHhccccCCCcc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAV---TKA-RGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSKARA  108 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i---~~~-~~~eLvg~vd~~~~g~d~~~~~-g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (303)
                      ..-|++|.|- |.||+..++..   .+. +..++||++ ++..|+|++++. |.  ..++|+++|++++++     ..+|
T Consensus        21 ~~~~~vi~~~-g~~g~~~aKta~gllr~~~~~~iVgvi-~~~~Gkd~ge~~~g~--~~gipv~~d~~~al~-----~~~d   91 (350)
T 2g0t_A           21 PGTPAAIVAW-GQLGTAHAKTTYGLLRHSRLFKPVCVV-AEHEGKMASDFVKPV--RYDVPVVSSVEKAKE-----MGAE   91 (350)
T ss_dssp             TTEEEEEECT-TTTTSGGGHHHHHHHHHCSSEEEEEEE-SSCTTCBGGGTCC-C--CSCCBEESSHHHHHH-----TTCC
T ss_pred             cCCCEEEEeC-CCCChHHHHHHHHHHhhCCCCeEEEEe-ecCCCCcHHHhhCCC--CCCceeeCCHHHHHh-----cCCC
Confidence            3468999996 99999988855   555 679999999 888999999988 53  589999999999996     4799


Q ss_pred             EEEEcC------CchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEc
Q 022057          109 VVIDFT------DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA  162 (303)
Q Consensus       109 VvIDfT------~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a  162 (303)
                      ++|-.+      .|+...+.+..|+++|++||+|-.-+ ..+..+|.++|+++|+.++-.
T Consensus        92 ~lvig~a~~gg~l~~~~~~~I~~Al~~G~nVvsglh~~-l~~~pel~~~A~~~Gv~i~dv  150 (350)
T 2g0t_A           92 VLIIGVSNPGGYLEEQIATLVKKALSLGMDVISGLHFK-ISQQTEFLKIAHENGTRIIDI  150 (350)
T ss_dssp             EEEECCCSCCHHHHHHHHHHHHHHHHTTCEEEECCCC---CCHHHHHHHHHHHTCCEEES
T ss_pred             EEEEEecCCCCCCCHHHHHHHHHHHHcCCcEEeCChhh-hhCCHHHHHHHHHCCCEEEEe
Confidence            999764      35677899999999999999987654 233456888999988776644

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.70  E-value=5.8e-08  Score=80.96  Aligned_cols=112  Identities=12%  Similarity=0.146  Sum_probs=84.4

Q ss_pred             eeEEEEcCC---cHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      .+|+|+|++   |+||..+++.+.+ .+++ +..+++...|..         -.|+++|.|++++.      ..+|++|-
T Consensus        14 ~~IavIGas~~~g~~G~~~~~~L~~-~G~~-v~~vnp~~~g~~---------i~G~~~~~sl~el~------~~~Dlvii   76 (145)
T 2duw_A           14 RTIALVGASDKPDRPSYRVMKYLLD-QGYH-VIPVSPKVAGKT---------LLGQQGYATLADVP------EKVDMVDV   76 (145)
T ss_dssp             CCEEEESCCSCTTSHHHHHHHHHHH-HTCC-EEEECSSSTTSE---------ETTEECCSSTTTCS------SCCSEEEC
T ss_pred             CEEEEECcCCCCCChHHHHHHHHHH-CCCE-EEEeCCcccccc---------cCCeeccCCHHHcC------CCCCEEEE
Confidence            579999987   8999999999875 4566 444555432121         24789999998875      47999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      +++++.+.+.+..+++.|+..|+-.+|-.   .+++.+++++.|+. ++.|| ++|+
T Consensus        77 ~vp~~~v~~v~~~~~~~g~~~i~i~~~~~---~~~l~~~a~~~Gi~-~igpn-c~g~  128 (145)
T 2duw_A           77 FRNSEAAWGVAQEAIAIGAKTLWLQLGVI---NEQAAVLAREAGLS-VVMDR-CPAI  128 (145)
T ss_dssp             CSCSTHHHHHHHHHHHHTCCEEECCTTCC---CHHHHHHHHTTTCE-EECSC-CHHH
T ss_pred             EeCHHHHHHHHHHHHHcCCCEEEEcCChH---HHHHHHHHHHcCCE-EEcCC-eeeE
Confidence            99999999999999999976555445432   24678889998888 55677 8887

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.69  E-value=7.1e-08  Score=79.99  Aligned_cols=115  Identities=12%  Similarity=0.094  Sum_probs=89.3

Q ss_pred             ceeEEEEcCC---cHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      +-+|+|+|++   |+||+.+++.+. ..+++ +.-+++...+.   +      -.|+++|.|++++-      ..+|++|
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~-~~G~~-v~~vnp~~~~~---~------i~G~~~~~sl~el~------~~vDlav   75 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLR-EQGYR-VLPVNPRFQGE---E------LFGEEAVASLLDLK------EPVDILD   75 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHH-HTTCE-EEEECGGGTTS---E------ETTEECBSSGGGCC------SCCSEEE
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHH-HCCCE-EEEeCCCcccC---c------CCCEEecCCHHHCC------CCCCEEE
Confidence            3589999997   899999999877 45787 33344431111   1      24789999999885      4799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHH
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~l  171 (303)
                      -|.+++.+.+.++.|.+.|+..++-.+|+..   +++.++++++|+. ++.|| ++|+..
T Consensus        76 i~vp~~~~~~v~~~~~~~gi~~i~~~~g~~~---~~~~~~a~~~Gir-~vgpn-c~g~~~  130 (140)
T 1iuk_A           76 VFRPPSALMDHLPEVLALRPGLVWLQSGIRH---PEFEKALKEAGIP-VVADR-CLMVEH  130 (140)
T ss_dssp             ECSCHHHHTTTHHHHHHHCCSCEEECTTCCC---HHHHHHHHHTTCC-EEESC-CHHHHH
T ss_pred             EEeCHHHHHHHHHHHHHcCCCEEEEcCCcCH---HHHHHHHHHcCCE-EEcCC-ccceEC
Confidence            9999999999999999999988887887753   4688889999998 55677 888753

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}

Probab=98.67  E-value=5.9e-08  Score=101.23  Aligned_cols=122  Identities=16%  Similarity=0.226  Sum_probs=96.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHh-----cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTK-----ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~-----~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (303)
                      ..||.|.|++||   .+.+.+..     .++.++|+.+++...|.+...+.|. .+.|+|+|.+++++.+.   ..++|+
T Consensus       496 ~trviV~G~tg~---~~~~ml~~~~~~~~~~~~vVa~V~P~~~g~~~~~~~G~-~~~Gvp~y~sv~ea~~~---~p~~Dl  568 (829)
T 3pff_A          496 HTKAIVWGMQTR---AVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGH-KEILIPVFKNMADAMRK---HPEVDV  568 (829)
T ss_dssp             TCCEEEESCCHH---HHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETT-EEEEEEEESSHHHHHHH---CTTCCE
T ss_pred             CCeEEEECCcHH---HHHHHHHhcccccCCCCcEEEEEcCCCCCccceEEecC-CcCCcccCCcHHHHhhc---cCCCcE
Confidence            589999999988   45555443     3788999999987644343333343 35689999999998752   015899


Q ss_pred             EEEcCCchhHHHHHHHHHH-cCCCeEEe-CCCCCHHHHHHHHHHhhhcCCeEEEcCC
Q 022057          110 VIDFTDASTVYDNVKQATA-FGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIAPT  164 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~-~g~~vVig-TTG~~~e~~~~L~~~a~~~~i~vv~a~N  164 (303)
                      +|.|.++..+.+.++.|++ .|++.++- |.||.+.+..+|.++|+++|+. ++.||
T Consensus       569 aVI~vP~~~v~~av~ea~~~~Gvk~~Viis~Gf~e~~~~~l~~~A~~~g~r-liGPN  624 (829)
T 3pff_A          569 LINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVT-IIGPA  624 (829)
T ss_dssp             EEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCE-EECSS
T ss_pred             EEEeCCHHHHHHHHHHHHhhCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCE-EEcCC
Confidence            9999999999999999999 99986554 6799988888999999999985 77888

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.66  E-value=5.7e-08  Score=93.77  Aligned_cols=147  Identities=9%  Similarity=0.106  Sum_probs=96.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcC-CC----CC-----CeeecCCHHHHHhcccc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDM-EQ----PL-----EIPVMSDLTMVLGSISQ  103 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~~~~~g~-~~----~~-----gv~v~~dl~~~l~~~~~  103 (303)
                      |+||+|+|+ |.+|+.+++.+.+.++. ..+.+++++.  ..+..++.. ..    ..     ++.-.++++++++.   
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~--~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~---   74 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTL--SKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINE---   74 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCH--HHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHH---
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCH--HHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHh---
Confidence            579999999 99999999999988775 4455677642  111111100 00    01     11112356666652   


Q ss_pred             CCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCC--------HHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH
Q 022057          104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQ--------LETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (303)
Q Consensus       104 ~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~--------~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~  175 (303)
                       .++|+||.++.|....+.+..|+++|+++|. ++++.        -++..++.+.++++|+.++..++|..|..-+  +
T Consensus        75 -~~~DvVin~ag~~~~~~v~~a~l~~g~~vvD-~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g~G~~PG~~~l--~  150 (405)
T 4ina_A           75 -VKPQIVLNIALPYQDLTIMEACLRTGVPYLD-TANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGSGFDPGVTNV--F  150 (405)
T ss_dssp             -HCCSEEEECSCGGGHHHHHHHHHHHTCCEEE-SSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEECCBTTTBHHHH--H
T ss_pred             -hCCCEEEECCCcccChHHHHHHHHhCCCEEE-ecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEcCCCCccHHHH--H
Confidence             2489999999998889999999999999885 44321        1233578888999999999999999998432  2


Q ss_pred             HHHhcc-CCCcEEEEEc
Q 022057          176 AISASF-HYKNVEIVES  191 (303)
Q Consensus       176 a~~~~~-~~~dieIiE~  191 (303)
                      +..+++ .+.+++.++.
T Consensus       151 a~~~~~~~~~~i~~i~i  167 (405)
T 4ina_A          151 CAYAQKHYFDEIHEIDI  167 (405)
T ss_dssp             HHHHHHHTCSEEEEEEE
T ss_pred             HHHHHHhccCcccEEEE
Confidence            222222 2445665654

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=98.63  E-value=3.4e-08  Score=93.83  Aligned_cols=115  Identities=13%  Similarity=0.083  Sum_probs=95.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHH---HhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAV---TKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i---~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      -|++|.+- |.+|+..+|..   ...++.++||++|++..|+|++++.|.  +.++|++.|++++++     .++|++|-
T Consensus         8 ~~~vi~~~-g~~~~~~aKta~gl~r~~~~~iVgvid~~~~G~d~ge~~g~--~~gipi~~~l~~al~-----~~~d~lvi   79 (349)
T 2obn_A            8 QRVAILLH-EGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGI--YRYVPIVKSVEAALE-----YKPQVLVI   79 (349)
T ss_dssp             CCEEEECT-TTSSSSSCHHHHHHHHHCCSCEEEEECGGGTTSCHHHHHCC--CSCCCEESSHHHHGG-----GCCSEEEE
T ss_pred             CcEEEEeC-CCCCcHHHHHhHHhhhcCCCcEEEEEeCCCCCCcHHHhcCC--cCCCCccCCHHHHHh-----CCCCEEEE
Confidence            36888885 99998877776   677889999999998899999999996  689999999999996     48999998


Q ss_pred             cC------CchhHHHHHHHHHHcCCCeEEeCCC-CCHHHHHHHHHHhhhcCCeEEE
Q 022057          113 FT------DASTVYDNVKQATAFGMRSVVYVPH-IQLETVSALSAFCDKASMGCLI  161 (303)
Q Consensus       113 fT------~p~a~~~~~~~al~~g~~vVigTTG-~~~e~~~~L~~~a~~~~i~vv~  161 (303)
                      -+      .|+...+.+..|+++|++||.|--. +++  ..+|.++|++ |+.++=
T Consensus        80 g~a~~gG~l~~~~~~~i~~Al~~G~~Vvsglh~~l~~--~pel~~~A~~-g~~i~d  132 (349)
T 2obn_A           80 GIAPKGGGIPDDYWIELKTALQAGMSLVNGLHTPLAN--IPDLNALLQP-GQLIWD  132 (349)
T ss_dssp             CCCCCCC-SCGGGHHHHHHHHHTTCEEEECSSSCCTT--CHHHHHHCCT-TCCEEE
T ss_pred             EecCCCCCCCHHHHHHHHHHHHcCCcEEeCccchhhC--CHHHHHHHHc-CCEEEE
Confidence            65      3678899999999999999998764 332  2358888988 877663

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=98.62  E-value=1.3e-07  Score=89.81  Aligned_cols=100  Identities=16%  Similarity=0.102  Sum_probs=70.2

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCCCC-------CCeeec-CCHHHHHhcccc
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQP-------LEIPVM-SDLTMVLGSISQ  103 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~g~d~~~~~g~~~~-------~gv~v~-~dl~~~l~~~~~  103 (303)
                      .||+||+|+|++|++|+.+++.+.++|+++|+++.+ +...|+...+..+...+       ..+.+. .+++++++    
T Consensus         6 ~M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   81 (354)
T 1ys4_A            6 KMKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEF----   81 (354)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGG----
T ss_pred             cccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhc----
Confidence            356899999999999999999999999999999885 33445554433221000       011111 24444432    


Q ss_pred             CCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057          104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (303)
Q Consensus       104 ~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT  137 (303)
                       .++|+|+.++....+.+.+..++++|+.||.-+
T Consensus        82 -~~~DvV~~atp~~~~~~~a~~~~~aG~~VId~s  114 (354)
T 1ys4_A           82 -EDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNA  114 (354)
T ss_dssp             -TTCCEEEECCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             -CCCCEEEECCCchHHHHHHHHHHHCCCEEEECC
Confidence             279999988888888999999999999966543

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=98.62  E-value=8.4e-08  Score=78.07  Aligned_cols=111  Identities=13%  Similarity=0.155  Sum_probs=88.7

Q ss_pred             ceeEEEEcCC---cHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |-+|+|+|++   ++.|..+.+.+.+. ++++.. +++..     .+      -.|.++|.|++++-      . +|+++
T Consensus         4 p~siAVVGaS~~~~~~g~~v~~~L~~~-g~~V~p-VnP~~-----~~------i~G~~~y~sl~dlp------~-vDlav   63 (122)
T 3ff4_A            4 MKKTLILGATPETNRYAYLAAERLKSH-GHEFIP-VGRKK-----GE------VLGKTIINERPVIE------G-VDTVT   63 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHH-TCCEEE-ESSSC-----SE------ETTEECBCSCCCCT------T-CCEEE
T ss_pred             CCEEEEEccCCCCCCHHHHHHHHHHHC-CCeEEE-ECCCC-----Cc------CCCeeccCChHHCC------C-CCEEE
Confidence            3579999996   68999999998864 667665 44431     22      24678899988773      5 99999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHH
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~l  171 (303)
                      -|++|+.+.+.++.|.+.|+..|+-++|+.+   +++.+.|+++|+.++  +| ++|+.+
T Consensus        64 i~~p~~~v~~~v~e~~~~g~k~v~~~~G~~~---~e~~~~a~~~Girvv--~n-C~gv~l  117 (122)
T 3ff4_A           64 LYINPQNQLSEYNYILSLKPKRVIFNPGTEN---EELEEILSENGIEPV--IG-CTLVML  117 (122)
T ss_dssp             ECSCHHHHGGGHHHHHHHCCSEEEECTTCCC---HHHHHHHHHTTCEEE--ES-CHHHHH
T ss_pred             EEeCHHHHHHHHHHHHhcCCCEEEECCCCCh---HHHHHHHHHcCCeEE--CC-cCeEEe
Confidence            9999999999999999999999998999864   468888999999977  45 888853

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=98.58  E-value=8.9e-08  Score=92.13  Aligned_cols=122  Identities=9%  Similarity=0.005  Sum_probs=81.3

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEE-EecCC---------CCc------c---hhhhhcCCCCCCeee---
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGA-IDSHS---------VGE------D---IGMVCDMEQPLEIPV---   90 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~-vd~~~---------~g~------d---~~~~~g~~~~~gv~v---   90 (303)
                      +|+||+|+|+||.||+.+++.+.++|+ ++++++ .+++.         .+.      |   ..++.......+..+   
T Consensus         3 ~m~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~v~~g   82 (388)
T 1r0k_A            3 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAG   82 (388)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEES
T ss_pred             CceEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcEEEeC
Confidence            368999999999999999999999987 999987 43321         000      0   000000000111222   


Q ss_pred             cCCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057           91 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus        91 ~~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      .++++++++.    . +|+||+.+.-.+..+....|+++||+|++..-......-..|.++|+++|+.++
T Consensus        83 ~~~~~el~~~----~-iDvVV~ai~G~aGl~ptlaAi~aGK~VvlANKE~lv~~G~~l~~~A~~~gv~li  147 (388)
T 1r0k_A           83 ADALVEAAMM----G-ADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLL  147 (388)
T ss_dssp             HHHHHHHHTS----C-CSEEEECCCSGGGHHHHHHHHHTTSEEEECCSHHHHTTHHHHHHHHHHHTCEEE
T ss_pred             ccHHHHHHcC----C-CCEEEEeCCCHHHHHHHHHHHHCCCEEEEeCcHHHHhhHHHHHHHHHHcCCEEE
Confidence            2234455542    5 999999997777899999999999999997433323334568888999888764

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=98.56  E-value=2.4e-07  Score=87.75  Aligned_cols=98  Identities=12%  Similarity=0.049  Sum_probs=71.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC-CCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~-~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |+||+|+|++|++|+.+++.+.++|++||+++.+....|....+..+.... ..+.+ .++++ +      .++|+|+.+
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~-~~~~~-~------~~vDvV~~a   75 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKF-VPPEK-L------EPADILVLA   75 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBC-BCGGG-C------CCCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccc-cchhH-h------cCCCEEEEc
Confidence            689999999999999999999999999999988865555554432221000 12222 23432 3      379999988


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTTG~  140 (303)
                      +....+.+.+..++++|+.+|.-+..+
T Consensus        76 ~g~~~s~~~a~~~~~aG~~VId~Sa~~  102 (345)
T 2ozp_A           76 LPHGVFAREFDRYSALAPVLVDLSADF  102 (345)
T ss_dssp             CCTTHHHHTHHHHHTTCSEEEECSSTT
T ss_pred             CCcHHHHHHHHHHHHCCCEEEEcCccc
Confidence            888888999999999999977655433

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=98.54  E-value=1.8e-07  Score=88.54  Aligned_cols=100  Identities=18%  Similarity=0.234  Sum_probs=69.4

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec-CCCCcchhhh------hcCC----------CCC-----Ceeec
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMV------CDME----------QPL-----EIPVM   91 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~-~~~g~d~~~~------~g~~----------~~~-----gv~v~   91 (303)
                      ||+||+|+|+ |+||+.+++.+.++|++||+++.|+ ... ..++.+      .|..          ..+     .++++
T Consensus         2 m~ikVgI~G~-GrIGr~l~R~l~~~p~vevvaI~d~~~~~-~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~   79 (337)
T 3e5r_O            2 GKIKIGINGF-GRIGRLVARVALQSEDVELVAVNDPFITT-DYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVF   79 (337)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSSCH-HHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEE
T ss_pred             CceEEEEECc-CHHHHHHHHHHhCCCCeEEEEEECCCCCH-HHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEE
Confidence            4589999999 9999999999999999999999884 110 000011      1100          000     12334


Q ss_pred             C--CHHHH-HhccccCCCccEEEEcCCchhHHHHHHHHHHcCCC-eEEeCCC
Q 022057           92 S--DLTMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPH  139 (303)
Q Consensus        92 ~--dl~~~-l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~-vVigTTG  139 (303)
                      .  |++++ ..+    .++|+|+++|....+.+.+..++++|+. +||..++
T Consensus        80 ~~~dp~~l~w~~----~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa  127 (337)
T 3e5r_O           80 GIRNPDEIPWAE----AGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPS  127 (337)
T ss_dssp             CCSCGGGCCHHH----HTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             ecCChHHccccc----cCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCC
Confidence            2  66654 111    3789999999999999999999999985 7777654

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=98.53  E-value=3.7e-07  Score=86.59  Aligned_cols=99  Identities=16%  Similarity=0.153  Sum_probs=69.8

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCCC-------CCCeeecC-CHHHHHhccccC
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQ-------PLEIPVMS-DLTMVLGSISQS  104 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~g~d~~~~~g~~~-------~~gv~v~~-dl~~~l~~~~~~  104 (303)
                      +|+||+|+|++|++|+.+++.+.++|++||+++.+ +...|+...+..+...       ...+.+.+ +.++ +      
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~------   75 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-H------   75 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-G------
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-h------
Confidence            36899999999999999999999999999999884 3333444432221100       01122211 2322 2      


Q ss_pred             CCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCC
Q 022057          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (303)
Q Consensus       105 ~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG  139 (303)
                      .++|+|+.++....+.+.+..++++|+++|.-+..
T Consensus        76 ~~vDvVf~atp~~~s~~~a~~~~~aG~~VId~s~~  110 (350)
T 2ep5_A           76 KDVDVVLSALPNELAESIELELVKNGKIVVSNASP  110 (350)
T ss_dssp             TTCSEEEECCCHHHHHHHHHHHHHTTCEEEECSST
T ss_pred             cCCCEEEECCChHHHHHHHHHHHHCCCEEEECCcc
Confidence            37999998888788999999999999998876644

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=98.52  E-value=9.6e-08  Score=90.59  Aligned_cols=96  Identities=20%  Similarity=0.227  Sum_probs=66.2

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--------cC---------CCCCCeeecCCHHH
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--------DM---------EQPLEIPVMSDLTM   96 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--------g~---------~~~~gv~v~~dl~~   96 (303)
                      ||+||||+|+ |++||.+++++.++++++|+++.|... .. ...++        |.         ....++.+..+.++
T Consensus         1 MmikVgI~G~-G~IGr~v~r~l~~~~~~evvaV~d~~~-~~-~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~   77 (343)
T 2yyy_A            1 MPAKVLINGY-GSIGKRVADAVSMQDDMEVIGVTKTKP-DF-EARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILD   77 (343)
T ss_dssp             -CEEEEEECC-SHHHHHHHHHHHHSSSEEEEEEEESSC-SH-HHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGG
T ss_pred             CceEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCH-HH-HHHHHHhcCCccccccCCCceeecccCCeEEECCchHH
Confidence            6789999999 999999999999889999999988531 11 00000        00         00012223334444


Q ss_pred             HHhccccCCCccEEEEcCCchhHHHHHH-HHHHcCCCeEEeCC
Q 022057           97 VLGSISQSKARAVVIDFTDASTVYDNVK-QATAFGMRSVVYVP  138 (303)
Q Consensus        97 ~l~~~~~~~~~DVvIDfT~p~a~~~~~~-~al~~g~~vVigTT  138 (303)
                      ++      .++|+|+++|......+.+. .++++|++||+..+
T Consensus        78 ~~------~~vDiV~eatg~~~s~~~a~~~~l~aG~~VI~sap  114 (343)
T 2yyy_A           78 II------EDADIVVDGAPKKIGKQNLENIYKPHKVKAILQGG  114 (343)
T ss_dssp             TG------GGCSEEEECCCTTHHHHHHHHTTTTTTCEEEECTT
T ss_pred             hc------cCCCEEEECCCccccHHHHHHHHHHCCCEEEECCC
Confidence            44      37899998887777788886 99999999887554

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=98.50  E-value=3.1e-07  Score=81.42  Aligned_cols=94  Identities=14%  Similarity=0.167  Sum_probs=69.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--cCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ..||+|+|+ |++|+.+++.+....+++++|++|.+.  ...+..+     .++++  +++++++++    . ++|++|.
T Consensus        80 ~~rV~IIGa-G~~G~~la~~~~~~~g~~iVg~~D~dp--~k~g~~i-----~gv~V~~~~dl~ell~----~-~ID~ViI  146 (211)
T 2dt5_A           80 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDP--EKVGRPV-----RGGVIEHVDLLPQRVP----G-RIEIALL  146 (211)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCT--TTTTCEE-----TTEEEEEGGGHHHHST----T-TCCEEEE
T ss_pred             CCEEEEECc-cHHHHHHHHhHhhcCCcEEEEEEeCCH--HHHhhhh-----cCCeeecHHhHHHHHH----c-CCCEEEE
Confidence            479999998 999999999633223899999999642  1122211     23444  678888875    3 7999998


Q ss_pred             cCCchhHHHHHHHHHHcCCCeE-EeCC-CCC
Q 022057          113 FTDASTVYDNVKQATAFGMRSV-VYVP-HIQ  141 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vV-igTT-G~~  141 (303)
                      +++...+.+.+..++++|++.| ..|| .++
T Consensus       147 A~Ps~~~~ei~~~l~~aGi~~Ilnf~P~~l~  177 (211)
T 2dt5_A          147 TVPREAAQKAADLLVAAGIKGILNFAPVVLE  177 (211)
T ss_dssp             CSCHHHHHHHHHHHHHHTCCEEEECSSSCCC
T ss_pred             eCCchhHHHHHHHHHHcCCCEEEECCccccc
Confidence            8888888999999999999955 5566 444

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=98.47  E-value=7.9e-07  Score=84.08  Aligned_cols=100  Identities=19%  Similarity=0.127  Sum_probs=75.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCC-CCCCeeecC--CHHHHHhccccCCCcc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDME-QPLEIPVMS--DLTMVLGSISQSKARA  108 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~~~~~g~~-~~~gv~v~~--dl~~~l~~~~~~~~~D  108 (303)
                      |+||+|+|++|.+|+.+++.+.++|+++|+++..+.   ..|+...+..... ...+..+.+  +.+++.      .++|
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~------~~~D   77 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFS------PGVD   77 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTC------TTCS
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHh------cCCC
Confidence            699999999999999999999999999999998876   6677766432110 111333332  444443      3799


Q ss_pred             EEEEcCCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (303)
Q Consensus       109 VvIDfT~p~a~~~~~~~al~~g~~vVigTTG~  140 (303)
                      +|+.++......+.+..+++.|+.+|.=+..|
T Consensus        78 vvf~a~p~~~s~~~~~~~~~~g~~vIDlSa~f  109 (337)
T 3dr3_A           78 VVFLATAHEVSHDLAPQFLEAGCVVFDLSGAF  109 (337)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEECSSTT
T ss_pred             EEEECCChHHHHHHHHHHHHCCCEEEEcCCcc
Confidence            99977777777999999999999988766655

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=98.44  E-value=2.6e-07  Score=87.33  Aligned_cols=100  Identities=19%  Similarity=0.252  Sum_probs=66.8

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec-CCCCcch---------hhhhcCC----C-----CCCeeec--C
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDI---------GMVCDME----Q-----PLEIPVM--S   92 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~-~~~g~d~---------~~~~g~~----~-----~~gv~v~--~   92 (303)
                      ||+||+|+|+ |++|+.+++.+.++|++||+++.|+ ...+.-+         +.+.+.-    .     ...++++  .
T Consensus         2 M~ikVgI~G~-G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~   80 (335)
T 1u8f_O            2 GKVKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQER   80 (335)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred             CceEEEEEcc-CHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecC
Confidence            4589999998 9999999999999999999999884 2111000         0000000    0     0012233  3


Q ss_pred             CHHHH-HhccccCCCccEEEEcCCchhHHHHHHHHHHcC-CCeEEeCC
Q 022057           93 DLTMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVP  138 (303)
Q Consensus        93 dl~~~-l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g-~~vVigTT  138 (303)
                      |++++ ..    +.++|+|+++|....+.+.+..++++| +.|++..+
T Consensus        81 d~~~l~~~----~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap  124 (335)
T 1u8f_O           81 DPSKIKWG----DAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAP  124 (335)
T ss_dssp             SGGGCCTT----TTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSC
T ss_pred             CHHHCccc----cCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccC
Confidence            56655 21    147999999999999999999999999 55555543

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=98.42  E-value=6e-07  Score=79.79  Aligned_cols=92  Identities=21%  Similarity=0.278  Sum_probs=63.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHH-HHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIA-VTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~-i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      .+||+|+|+ |++|+.+++. ....++++++|++|.+.  ...+..+   ...++..+++++++++     .. |++|.+
T Consensus        85 ~~rV~IIGA-G~~G~~La~~~~~~~~g~~iVg~~D~dp--~k~g~~i---~gv~V~~~~dl~eli~-----~~-D~ViIA  152 (215)
T 2vt3_A           85 MTDVILIGV-GNLGTAFLHYNFTKNNNTKISMAFDINE--SKIGTEV---GGVPVYNLDDLEQHVK-----DE-SVAILT  152 (215)
T ss_dssp             --CEEEECC-SHHHHHHHHCC------CCEEEEEESCT--TTTTCEE---TTEEEEEGGGHHHHCS-----SC-CEEEEC
T ss_pred             CCEEEEEcc-CHHHHHHHHHHhcccCCcEEEEEEeCCH--HHHHhHh---cCCeeechhhHHHHHH-----hC-CEEEEe
Confidence            478999998 9999999995 34567899999999653  1122211   1123334678888885     24 999988


Q ss_pred             CCchhHHHHHHHHHHcCCC-eEEeCC
Q 022057          114 TDASTVYDNVKQATAFGMR-SVVYVP  138 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~-vVigTT  138 (303)
                      ++...+.+.+..++++|++ ++..||
T Consensus       153 vPs~~~~ei~~~l~~aGi~~Ilnf~P  178 (215)
T 2vt3_A          153 VPAVAAQSITDRLVALGIKGILNFTP  178 (215)
T ss_dssp             SCHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cCchhHHHHHHHHHHcCCCEEEEcCc
Confidence            8878889999999999999 566666

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=98.40  E-value=4.7e-07  Score=86.27  Aligned_cols=97  Identities=12%  Similarity=0.114  Sum_probs=69.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC-C--CCeeecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ-P--LEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~-~--~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ++||+|+|++|++|+.+++.+.++|+++|+++.++...|....+..+... .  .++.+. + ++.+      .++|+|+
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~-~-~~~~------~~vDvVf   87 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSV-K-DADF------STVDAVF   87 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCG-G-GCCG------GGCSEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceec-c-hhHh------cCCCEEE
Confidence            38999999999999999999999999999998886554544443222100 0  112221 2 3333      3689999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTTG~  140 (303)
                      .++....+.+.+..+ ++|+.+|.-+..|
T Consensus        88 ~atp~~~s~~~a~~~-~aG~~VId~sa~~  115 (359)
T 1xyg_A           88 CCLPHGTTQEIIKEL-PTALKIVDLSADF  115 (359)
T ss_dssp             ECCCTTTHHHHHHTS-CTTCEEEECSSTT
T ss_pred             EcCCchhHHHHHHHH-hCCCEEEECCccc
Confidence            888888899999999 9999877655444

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.36  E-value=5.2e-06  Score=64.35  Aligned_cols=106  Identities=15%  Similarity=0.155  Sum_probs=70.9

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----cC---CHHHHHhccccCC
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MS---DLTMVLGSISQSK  105 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~~---dl~~~l~~~~~~~  105 (303)
                      .|++||+|+|+ |.||+.+++.+.+....+++. ++++.  .....+.    ..++..    ..   ++++++      .
T Consensus         3 ~~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~-~~r~~--~~~~~~~----~~~~~~~~~d~~~~~~~~~~~------~   68 (118)
T 3ic5_A            3 AMRWNICVVGA-GKIGQMIAALLKTSSNYSVTV-ADHDL--AALAVLN----RMGVATKQVDAKDEAGLAKAL------G   68 (118)
T ss_dssp             TTCEEEEEECC-SHHHHHHHHHHHHCSSEEEEE-EESCH--HHHHHHH----TTTCEEEECCTTCHHHHHHHT------T
T ss_pred             CCcCeEEEECC-CHHHHHHHHHHHhCCCceEEE-EeCCH--HHHHHHH----hCCCcEEEecCCCHHHHHHHH------c
Confidence            35789999999 999999999988654377654 56532  1222222    122211    12   333444      4


Q ss_pred             CccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhh
Q 022057          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (303)
Q Consensus       106 ~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~  154 (303)
                      ++|+||+++.+......+..+.+.|++.+.-++  +.+..+.+.++.++
T Consensus        69 ~~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~  115 (118)
T 3ic5_A           69 GFDAVISAAPFFLTPIIAKAAKAAGAHYFDLTE--DVAATNAVRALVED  115 (118)
T ss_dssp             TCSEEEECSCGGGHHHHHHHHHHTTCEEECCCS--CHHHHHHHHHHHHC
T ss_pred             CCCEEEECCCchhhHHHHHHHHHhCCCEEEecC--cHHHHHHHHHHHHh
Confidence            799999999888889999999999999886432  33455667776665

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.31  E-value=1e-06  Score=78.91  Aligned_cols=97  Identities=15%  Similarity=0.164  Sum_probs=67.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ||||+|+|+ |+||+.+++.+.+. +.+ |.++|++.  ..+..+.   ..+|+.++.|++++++      ++|+||.++
T Consensus         3 ~m~i~iiG~-G~mG~~~a~~l~~~-g~~-v~~~~~~~--~~~~~~~---~~~g~~~~~~~~~~~~------~~D~Vi~~v   68 (259)
T 2ahr_A            3 AMKIGIIGV-GKMASAIIKGLKQT-PHE-LIISGSSL--ERSKEIA---EQLALPYAMSHQDLID------QVDLVILGI   68 (259)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTTS-SCE-EEEECSSH--HHHHHHH---HHHTCCBCSSHHHHHH------TCSEEEECS
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhC-CCe-EEEECCCH--HHHHHHH---HHcCCEeeCCHHHHHh------cCCEEEEEe
Confidence            579999997 99999999988754 454 56777642  2222222   1246667889999884      799999999


Q ss_pred             CchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHH
Q 022057          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSA  147 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~  147 (303)
                      +|..+.+.+... +.|+ +|+.++ |.+.+++++
T Consensus        69 ~~~~~~~v~~~l-~~~~-~vv~~~~~~~~~~l~~  100 (259)
T 2ahr_A           69 KPQLFETVLKPL-HFKQ-PIISMAAGISLQRLAT  100 (259)
T ss_dssp             CGGGHHHHHTTS-CCCS-CEEECCTTCCHHHHHH
T ss_pred             CcHhHHHHHHHh-ccCC-EEEEeCCCCCHHHHHH
Confidence            988877776543 4666 555664 888765443

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.31  E-value=7.6e-07  Score=80.05  Aligned_cols=97  Identities=14%  Similarity=0.137  Sum_probs=70.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      +|||+|+|+ |+||+.+++.+.+. +++++.++|++.  ..+..+.   ..+++.++.++++++      .++|+||.++
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~-g~~~v~~~~~~~--~~~~~~~---~~~g~~~~~~~~~~~------~~~Dvvi~av   76 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRK-GFRIVQVYSRTE--ESARELA---QKVEAEYTTDLAEVN------PYAKLYIVSL   76 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHH-TCCEEEEECSSH--HHHHHHH---HHTTCEEESCGGGSC------SCCSEEEECC
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHC-CCeEEEEEeCCH--HHHHHHH---HHcCCceeCCHHHHh------cCCCEEEEec
Confidence            479999998 99999999988754 677788888642  2222222   234677788888876      4799999999


Q ss_pred             CchhHHHHHHHHHH---cCCCeEEeCCCCCHHH
Q 022057          115 DASTVYDNVKQATA---FGMRSVVYVPHIQLET  144 (303)
Q Consensus       115 ~p~a~~~~~~~al~---~g~~vVigTTG~~~e~  144 (303)
                      ++..+.+.+....+   .+..+|..++|++.+.
T Consensus        77 ~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           77 KDSAFAELLQGIVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             CHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGG
T ss_pred             CHHHHHHHHHHHHhhcCCCcEEEECCCCCchHH
Confidence            98887777766554   4566666667877544

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.29  E-value=2.9e-06  Score=78.24  Aligned_cols=137  Identities=17%  Similarity=0.087  Sum_probs=75.7

Q ss_pred             cccccccccceEEEeecCCCCC---ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee
Q 022057           13 HHISQNVKAKRFISCSTNPPQS---NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP   89 (303)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~---~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~   89 (303)
                      ||-|..+.-+..-++-+....|   ++||+|+|+ |.||+.++..+.+ .++++ .++|++.  ..+..+.    +.|+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~-G~mG~~~a~~l~~-~g~~V-~~~~~~~--~~~~~~~----~~g~~   75 (316)
T 2uyy_A            5 HHHSSGVDLGTENLYFQSMGSITPTDKKIGFLGL-GLMGSGIVSNLLK-MGHTV-TVWNRTA--EKCDLFI----QEGAR   75 (316)
T ss_dssp             --------------------CCCCCSSCEEEECC-SHHHHHHHHHHHH-TTCCE-EEECSSG--GGGHHHH----HTTCE
T ss_pred             cccccccCccccceeecCCCCCCCCCCeEEEEcc-cHHHHHHHHHHHh-CCCEE-EEEeCCH--HHHHHHH----HcCCE
Confidence            4455555555555554443333   379999998 9999999998875 46775 4567542  2222232    24666


Q ss_pred             ecCCHHHHHhccccCCCccEEEEcCC-chhHHHHHHH------HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEc
Q 022057           90 VMSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA  162 (303)
Q Consensus        90 v~~dl~~~l~~~~~~~~~DVvIDfT~-p~a~~~~~~~------al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a  162 (303)
                      ++.+++++++      ++|+||.+++ |..+.+.+..      .+..+..+|..++ .+....++|.+...+.++.++-+
T Consensus        76 ~~~~~~~~~~------~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~-~~~~~~~~l~~~~~~~~~~~v~~  148 (316)
T 2uyy_A           76 LGRTPAEVVS------TCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMST-VDADTVTELAQVIVSRGGRFLEA  148 (316)
T ss_dssp             ECSCHHHHHH------HCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSC-CCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             EcCCHHHHHh------cCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHcCCEEEEc
Confidence            7788888874      6899998887 6666665542      2334555554444 45555666777665556666655


Q ss_pred             CCC
Q 022057          163 PTL  165 (303)
Q Consensus       163 ~N~  165 (303)
                      |.+
T Consensus       149 p~~  151 (316)
T 2uyy_A          149 PVS  151 (316)
T ss_dssp             CEE
T ss_pred             Ccc
Confidence            544

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=98.28  E-value=7e-06  Score=78.04  Aligned_cols=130  Identities=14%  Similarity=0.074  Sum_probs=73.9

Q ss_pred             cccccccccceEEEeecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecC
Q 022057           13 HHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS   92 (303)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~   92 (303)
                      ||.|.|.+.+     |+|.+-.+|||+|+|+ |.||+.++..+.+ .+++++ ++|++.  ..+..+.    +.++..+.
T Consensus         5 ~~~~~~~~~~-----~~~~Mm~~mkIgiIGl-G~mG~~~A~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~g~~~~~   70 (358)
T 4e21_A            5 HHHSSGVDLG-----TENLYFQSMQIGMIGL-GRMGADMVRRLRK-GGHECV-VYDLNV--NAVQALE----REGIAGAR   70 (358)
T ss_dssp             ----------------------CCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----TTTCBCCS
T ss_pred             cccchhhhcc-----cchhhhcCCEEEEECc-hHHHHHHHHHHHh-CCCEEE-EEeCCH--HHHHHHH----HCCCEEeC
Confidence            5566666654     3444323589999997 9999999998885 567765 567642  2223333    34677788


Q ss_pred             CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~---~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      |++++++..   ..+|+||-+.++..+.+.+...+.   .|.-+|..+|. ......++.+..++.++..+
T Consensus        71 s~~e~~~~a---~~~DvVi~~vp~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~~~~~~~~l~~~g~~~v  137 (358)
T 4e21_A           71 SIEEFCAKL---VKPRVVWLMVPAAVVDSMLQRMTPLLAANDIVIDGGNS-HYQDDIRRADQMRAQGITYV  137 (358)
T ss_dssp             SHHHHHHHS---CSSCEEEECSCGGGHHHHHHHHGGGCCTTCEEEECSSC-CHHHHHHHHHHHHTTTCEEE
T ss_pred             CHHHHHhcC---CCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEeCCCC-ChHHHHHHHHHHHHCCCEEE
Confidence            999988531   345999988777766666654433   34444444444 44455566666666676655

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.26  E-value=4.6e-06  Score=75.95  Aligned_cols=114  Identities=17%  Similarity=0.118  Sum_probs=73.1

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |+|||+|+|+ |.||+.++..+.. .++++ .++|++.  .....+.    +.|+..+.+++++++      ++|+||.+
T Consensus         4 M~m~i~iiG~-G~~G~~~a~~l~~-~g~~V-~~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~------~~D~vi~~   68 (299)
T 1vpd_A            4 MTMKVGFIGL-GIMGKPMSKNLLK-AGYSL-VVSDRNP--EAIADVI----AAGAETASTAKAIAE------QCDVIITM   68 (299)
T ss_dssp             --CEEEEECC-STTHHHHHHHHHH-TTCEE-EEECSCH--HHHHHHH----HTTCEECSSHHHHHH------HCSEEEEC
T ss_pred             ccceEEEECc-hHHHHHHHHHHHh-CCCEE-EEEeCCH--HHHHHHH----HCCCeecCCHHHHHh------CCCEEEEE
Confidence            5689999997 9999999998875 46775 4677642  1222222    236777889988874      68999988


Q ss_pred             CC-chhHHHHH------HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057          114 TD-ASTVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus       114 T~-p~a~~~~~------~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                      ++ |....+.+      ...++.|..+|.-++|. ....++|.+...+.++.++-+|
T Consensus        69 v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~l~~~~~~~g~~~~~~p  124 (299)
T 1vpd_A           69 LPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIA-PLASREISDALKAKGVEMLDAP  124 (299)
T ss_dssp             CSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCC-HHHHHHHHHHHHTTTCEEEECC
T ss_pred             CCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCC-HHHHHHHHHHHHHcCCeEEEec
Confidence            86 44444444      23345566565544555 4445667777666666655443

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=98.26  E-value=2.2e-06  Score=81.06  Aligned_cols=95  Identities=16%  Similarity=0.174  Sum_probs=63.8

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhh--c--CC-CCCCeeec--
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVC--D--ME-QPLEIPVM--   91 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~~~~~--g--~~-~~~gv~v~--   91 (303)
                      ||+||+|+|+ |++||.+++++.++  |++|++++-|..             ..|+-.++..  +  +. ....++++  
T Consensus         1 M~ikVgI~G~-G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~   79 (339)
T 3b1j_A            1 MTIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCD   79 (339)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECC
T ss_pred             CceEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEec
Confidence            5789999999 99999999999888  999999987641             1121111100  0  00 00013333  


Q ss_pred             CCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCC
Q 022057           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR  132 (303)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~  132 (303)
                      .|++++.-   .+.++|+|+++|......+.+...++.|..
T Consensus        80 ~dp~~l~w---~~~~vDvV~e~tg~~~s~e~a~~~l~~Gak  117 (339)
T 3b1j_A           80 RNPLNLPW---KEWDIDLVIESTGVFVTAEGASKHIQAGAK  117 (339)
T ss_dssp             SCGGGSCT---TTTTCCEEEECSSSCCBHHHHHHHHHTTCS
T ss_pred             CChHHCcc---cccCCCEEEECCCccccHHHHHHHHHcCCc
Confidence            35555420   013789999999888889999999999987

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=98.24  E-value=2.8e-06  Score=83.68  Aligned_cols=141  Identities=13%  Similarity=0.132  Sum_probs=93.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEE--EEecCCCCcchhhhhcCCCCCCeeec-CCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAG--AIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg--~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ++||.|+|+ |.||+.++..+.++++++++.  ++|+...+.++.+..|. ....+.+. ++++++++++++  +.|+||
T Consensus        13 ~~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~-~~~~~~Vdadnv~~~l~aLl~--~~DvVI   88 (480)
T 2ph5_A           13 KNRFVILGF-GCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGV-SFKLQQITPQNYLEVIGSTLE--ENDFLI   88 (480)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTC-EEEECCCCTTTHHHHTGGGCC--TTCEEE
T ss_pred             CCCEEEECc-CHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCC-ceeEEeccchhHHHHHHHHhc--CCCEEE
Confidence            679999998 999999999999988874222  34665545565544442 12223332 445555544333  249999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCC-CCC---H------------HHHHHHHHHhhh-cCCeEEEcCCCcHHHH-H-H
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQ---L------------ETVSALSAFCDK-ASMGCLIAPTLSIGSI-L-L  172 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTT-G~~---~------------e~~~~L~~~a~~-~~i~vv~a~N~SiGv~-l-l  172 (303)
                      +.+.|....+.++.|+++|++.+--+- -++   .            +..+.+.+.+++ +| ..+...-|..|+. + +
T Consensus        89 N~s~~~~~l~Im~acleaGv~YlDTa~E~~~p~~~~~~~~p~~~~~Y~~~~~~~~~~~~~~G-tAilg~G~nPGvvsvf~  167 (480)
T 2ph5_A           89 DVSIGISSLALIILCNQKGALYINAATEPWKEEFVMEKMALNRRTNYSLREEVLRLKDKTQK-TALITHGANPGLVSHFI  167 (480)
T ss_dssp             ECCSSSCHHHHHHHHHHHTCEEEESSCCCCCC----------CCCHHHHHHHHHTTTTTCCS-CEECSCBTTTBHHHHHH
T ss_pred             ECCccccCHHHHHHHHHcCCCEEECCCCcccccccccccCcchhhhHHHHHHHHHHHHhcCC-cEEecCCCCccHHHHHH
Confidence            999999999999999999999986432 111   1            222446666644 66 7788899999984 3 3


Q ss_pred             HHHHHHhc
Q 022057          173 QQAAISAS  180 (303)
Q Consensus       173 ~~~a~~~~  180 (303)
                      .+++..++
T Consensus       168 ~~Al~~la  175 (480)
T 2ph5_A          168 KEALLNIA  175 (480)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhHh
Confidence            44444443

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=98.23  E-value=2.8e-06  Score=81.57  Aligned_cols=94  Identities=16%  Similarity=0.181  Sum_probs=63.4

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEec-------------CCCCcchhhhh--c--CC-CCCCeeec--
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDS-------------HSVGEDIGMVC--D--ME-QPLEIPVM--   91 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~-------------~~~g~d~~~~~--g--~~-~~~gv~v~--   91 (303)
                      ||+||+|+|+ |++||.+++++.++  |+++|+++-|.             +..|+-.+++.  +  +. ....++++  
T Consensus         1 M~ikVgInGf-GrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~   79 (380)
T 2d2i_A            1 MTIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCD   79 (380)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECC
T ss_pred             CCcEEEEECc-CHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEec
Confidence            5689999999 99999999999888  89999998773             11122111110  0  00 00013332  


Q ss_pred             CCHHHHH-hccccCCCccEEEEcCCchhHHHHHHHHHHcCCC
Q 022057           92 SDLTMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMR  132 (303)
Q Consensus        92 ~dl~~~l-~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~  132 (303)
                      .|++++. .+    .++|+|+++|......+.+...++.|..
T Consensus        80 ~dp~~l~w~~----~gvDvV~e~TG~f~s~e~a~~hl~aGak  117 (380)
T 2d2i_A           80 RNPLNLPWKE----WDIDLVIESTGVFVTAEGASKHIQAGAK  117 (380)
T ss_dssp             SCGGGCCHHH----HTCCEEEECSSSCCBHHHHHHHHHTTCS
T ss_pred             CChHHCCccc----CCCCEEEECCCccccHHHHHHHHHcCCc
Confidence            3555542 10    2789999999888889999999999987

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.22  E-value=1.1e-05  Score=74.96  Aligned_cols=116  Identities=12%  Similarity=0.128  Sum_probs=77.6

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      +++||+|+|+ |.||+.+++.+.+ .+++++ ++|++.  ..+..+.    +.|+..++++++++      .++|+||-+
T Consensus        30 ~~~~I~iIG~-G~mG~~~a~~l~~-~G~~V~-~~dr~~--~~~~~l~----~~g~~~~~~~~e~~------~~aDvVi~~   94 (320)
T 4dll_A           30 YARKITFLGT-GSMGLPMARRLCE-AGYALQ-VWNRTP--ARAASLA----ALGATIHEQARAAA------RDADIVVSM   94 (320)
T ss_dssp             CCSEEEEECC-TTTHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----TTTCEEESSHHHHH------TTCSEEEEC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHh-CCCeEE-EEcCCH--HHHHHHH----HCCCEeeCCHHHHH------hcCCEEEEE
Confidence            4689999998 9999999998875 578865 467642  2223333    34778889999998      479999977


Q ss_pred             CC-chhHHHHHH--H---HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057          114 TD-ASTVYDNVK--Q---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       114 T~-p~a~~~~~~--~---al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      .+ +..+.+.+.  .   .+..|.-+ +-++..++...+++.+..++.++.++-+|-+
T Consensus        95 vp~~~~~~~v~~~~~~~~~l~~~~~v-i~~st~~~~~~~~~~~~~~~~g~~~~~~pv~  151 (320)
T 4dll_A           95 LENGAVVQDVLFAQGVAAAMKPGSLF-LDMASITPREARDHAARLGALGIAHLDTPVS  151 (320)
T ss_dssp             CSSHHHHHHHHTTTCHHHHCCTTCEE-EECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             CCCHHHHHHHHcchhHHhhCCCCCEE-EecCCCCHHHHHHHHHHHHHcCCEEEeCCCc
Confidence            75 344444442  2   23345444 4445555666677777777777777766643

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.21  E-value=1.1e-05  Score=74.53  Aligned_cols=116  Identities=13%  Similarity=0.114  Sum_probs=77.3

Q ss_pred             CCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        32 ~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ...|+||+|+|+ |.||+.+++.+.+ .+++++ ++|++.  ..+..+.    +.|+..++|++++++      ++|+||
T Consensus        18 ~~~m~~I~iIG~-G~mG~~~A~~l~~-~G~~V~-~~dr~~--~~~~~l~----~~g~~~~~~~~~~~~------~aDvvi   82 (310)
T 3doj_A           18 GSHMMEVGFLGL-GIMGKAMSMNLLK-NGFKVT-VWNRTL--SKCDELV----EHGASVCESPAEVIK------KCKYTI   82 (310)
T ss_dssp             CCCSCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSSG--GGGHHHH----HTTCEECSSHHHHHH------HCSEEE
T ss_pred             cccCCEEEEECc-cHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHH----HCCCeEcCCHHHHHH------hCCEEE
Confidence            344789999998 9999999999885 577766 477652  2223332    356778889999884      689999


Q ss_pred             EcCC-chhHHHHH---HH---HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057          112 DFTD-ASTVYDNV---KQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus       112 DfT~-p~a~~~~~---~~---al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                      -+.+ |..+.+.+   ..   .+..|. +|+-+++.++...+++.+..++.++..+-+|
T Consensus        83 ~~vp~~~~~~~v~~~~~~l~~~l~~g~-~vv~~st~~~~~~~~~~~~~~~~g~~~v~~p  140 (310)
T 3doj_A           83 AMLSDPCAALSVVFDKGGVLEQICEGK-GYIDMSTVDAETSLKINEAITGKGGRFVEGP  140 (310)
T ss_dssp             ECCSSHHHHHHHHHSTTCGGGGCCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             EEcCCHHHHHHHHhCchhhhhccCCCC-EEEECCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence            7764 34555554   22   233444 4555556666677777777777677655444

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.21  E-value=5.9e-06  Score=74.99  Aligned_cols=112  Identities=13%  Similarity=0.084  Sum_probs=71.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ||||+|+|+ |.||+.+++.+.+ .+++++ ++| +.  ..+..+.    +.|+.++.++++++.      ++|+||.++
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~-~g~~V~-~~~-~~--~~~~~~~----~~g~~~~~~~~~~~~------~~D~vi~~v   66 (295)
T 1yb4_A            3 AMKLGFIGL-GIMGSPMAINLAR-AGHQLH-VTT-IG--PVADELL----SLGAVNVETARQVTE------FADIIFIMV   66 (295)
T ss_dssp             -CEEEECCC-STTHHHHHHHHHH-TTCEEE-ECC-SS--CCCHHHH----TTTCBCCSSHHHHHH------TCSEEEECC
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHh-CCCEEE-EEc-CH--HHHHHHH----HcCCcccCCHHHHHh------cCCEEEEEC
Confidence            579999998 9999999998875 478875 456 32  2223333    236677888998874      799999887


Q ss_pred             Cchh-HHHHHH---H---HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057          115 DAST-VYDNVK---Q---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus       115 ~p~a-~~~~~~---~---al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                      +... +.+.+.   .   .++.|..+|.-+++ +....++|.+...+.++.++-+|
T Consensus        67 p~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~l~~~~~~~g~~~~~~p  121 (295)
T 1yb4_A           67 PDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSI-SPIETKRFAQRVNEMGADYLDAP  121 (295)
T ss_dssp             SSHHHHHHHHHSTTSSTTSCCTTEEEEECSCC-CHHHHHHHHHHHHTTTEEEEECC
T ss_pred             CCHHHHHHHHhCchhHhhcCCCCCEEEECCCC-CHHHHHHHHHHHHHcCCeEEEcc
Confidence            5554 344443   1   23445555554555 44455667777666566655444

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.20  E-value=1.4e-05  Score=72.82  Aligned_cols=112  Identities=15%  Similarity=0.108  Sum_probs=77.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      +||+|+|+ |.||+.+++.+.+ .+++++ ++|++.  ..+..+.    +.++..++|++++++      ++|+||.+.+
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVK-AGCSVT-IWNRSP--EKAEELA----ALGAERAATPCEVVE------SCPVTFAMLA   66 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSSG--GGGHHHH----HTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEEee-cHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEEEEcC
Confidence            69999998 9999999998875 578876 577652  2223332    346778889999984      6899998776


Q ss_pred             -chhHHHHH---H---HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057          116 -ASTVYDNV---K---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus       116 -p~a~~~~~---~---~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                       |..+.+.+   .   ..++.|.. |+-+++.+.+..+++.+..++.++..+-+|
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~~~~-vi~~st~~~~~~~~~~~~~~~~g~~~~~~p  120 (287)
T 3pef_A           67 DPAAAEEVCFGKHGVLEGIGEGRG-YVDMSTVDPATSQRIGVAVVAKGGRFLEAP  120 (287)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCE-EEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCE-EEeCCCCCHHHHHHHHHHHHHhCCEEEECC
Confidence             45555555   2   33445554 445566666677777777777777665544

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=98.19  E-value=4.1e-06  Score=82.15  Aligned_cols=111  Identities=14%  Similarity=0.132  Sum_probs=84.5

Q ss_pred             ceeEEEEcCCc---HHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVK---EIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~G---rMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      +-+|+|+|+++   ++|+.+.+.+.+.... .+..+++.  +   ++      -.|+++|.+++++.      ..+|++|
T Consensus         8 p~siAVvGas~~~~~~g~~v~~~l~~~g~~-~v~pVnP~--~---~~------i~G~~~y~sl~~lp------~~~Dlav   69 (457)
T 2csu_A            8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKG-KVYPVNIK--E---EE------VQGVKAYKSVKDIP------DEIDLAI   69 (457)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCCSS-EEEEECSS--C---SE------ETTEECBSSTTSCS------SCCSEEE
T ss_pred             CCeEEEECcCCCCCchHHHHHHHHHHcCCC-EEEEECCC--C---Ce------ECCEeccCCHHHcC------CCCCEEE
Confidence            46899999973   7899999998765433 44556654  1   11      35789999999885      4799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEe-CCCCCH--H----HHHHHHHHhhhcCCeEEEcCC
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVY-VPHIQL--E----TVSALSAFCDKASMGCLIAPT  164 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVig-TTG~~~--e----~~~~L~~~a~~~~i~vv~a~N  164 (303)
                      -|.+|+.+.+.++.|.+.|++.++- +.|+.+  +    ..+++.++++++|+.++ .||
T Consensus        70 i~vp~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~vi-GPn  128 (457)
T 2csu_A           70 IVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRII-GPN  128 (457)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEE-CSS
T ss_pred             EecCHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEE-cCC
Confidence            9999999999999999999996554 558853  1    25678899999888744 455

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=98.18  E-value=3.5e-06  Score=79.48  Aligned_cols=91  Identities=12%  Similarity=0.057  Sum_probs=66.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHH-HHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM-VLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~-~l~~~~~~~~~DVvI  111 (303)
                      |+||+|+|++|++|+.+++.+.++  |++||+++.++...|+... +.+    ..+.+ .+++. .+      .++|+|+
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~-~~~----~~i~~-~~~~~~~~------~~vDvVf   70 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYR-FNG----KTVRV-QNVEEFDW------SQVHIAL   70 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEE-ETT----EEEEE-EEGGGCCG------GGCSEEE
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCcee-ecC----ceeEE-ecCChHHh------cCCCEEE
Confidence            689999999999999999999888  8999999887544444322 111    12233 22221 12      3689999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeC
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYV  137 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigT  137 (303)
                      +++......+.+..+++.|+.+|.-+
T Consensus        71 ~a~g~~~s~~~a~~~~~~G~~vId~s   96 (336)
T 2r00_A           71 FSAGGELSAKWAPIAAEAGVVVIDNT   96 (336)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEECS
T ss_pred             ECCCchHHHHHHHHHHHcCCEEEEcC
Confidence            88888888999999999999776544

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=98.17  E-value=1.2e-05  Score=73.17  Aligned_cols=114  Identities=18%  Similarity=0.192  Sum_probs=74.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ++||+|+|+ |.||+.+++.+.+ .+++++ ++|++.  .....+.    +.|+.++++++++++      ++|+||.++
T Consensus         4 ~~~i~iiG~-G~~G~~~a~~l~~-~g~~V~-~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~------~~D~vi~~v   68 (301)
T 3cky_A            4 SIKIGFIGL-GAMGKPMAINLLK-EGVTVY-AFDLME--ANVAAVV----AQGAQACENNQKVAA------ASDIIFTSL   68 (301)
T ss_dssp             CCEEEEECC-CTTHHHHHHHHHH-TTCEEE-EECSSH--HHHHHHH----TTTCEECSSHHHHHH------HCSEEEECC
T ss_pred             CCEEEEECc-cHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHH----HCCCeecCCHHHHHh------CCCEEEEEC
Confidence            579999998 9999999998875 477865 577642  2222232    236777889998884      689999887


Q ss_pred             C-chhHHHHHH------HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCC
Q 022057          115 D-ASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (303)
Q Consensus       115 ~-p~a~~~~~~------~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N  164 (303)
                      + |..+.+.+.      ..++.|..+|.-++|. .+..++|.+...+.++.++-+|.
T Consensus        69 p~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~-~~~~~~l~~~~~~~g~~~~~~p~  124 (301)
T 3cky_A           69 PNAGIVETVMNGPGGVLSACKAGTVIVDMSSVS-PSSTLKMAKVAAEKGIDYVDAPV  124 (301)
T ss_dssp             SSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCC-HHHHHHHHHHHHHTTCEEEECCE
T ss_pred             CCHHHHHHHHcCcchHhhcCCCCCEEEECCCCC-HHHHHHHHHHHHHcCCeEEEccC
Confidence            4 444444442      2345566666655565 34455677766666666665543

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=98.16  E-value=4.5e-06  Score=78.95  Aligned_cols=101  Identities=23%  Similarity=0.195  Sum_probs=66.6

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHh---cCCcEEEEEEecC-------------CCCcchhhhh--c--CC-CCCCeeec-
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSH-------------SVGEDIGMVC--D--ME-QPLEIPVM-   91 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~---~~~~eLvg~vd~~-------------~~g~d~~~~~--g--~~-~~~gv~v~-   91 (303)
                      ||+||+|+|+ |++|+.+++++.+   +|+++|+++.|..             ..|+-.++.-  +  +. ....++++ 
T Consensus         1 M~ikVgI~G~-G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~   79 (339)
T 2x5j_O            1 MTVRVAINGF-GRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLH   79 (339)
T ss_dssp             -CEEEEEECC-SHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEEC
T ss_pred             CCeEEEEECc-CHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEe
Confidence            5689999998 9999999999998   8999999988741             0111000000  0  00 00123343 


Q ss_pred             -CCHHHHH-hccccCCCccEEEEcCCchhHHHHHHHHHHcCCC-eEEeCCC
Q 022057           92 -SDLTMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPH  139 (303)
Q Consensus        92 -~dl~~~l-~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~-vVigTTG  139 (303)
                       .|++++. .+    .++|+|+++|......+.+...++.|.. |||-.++
T Consensus        80 ~~dp~~l~~~~----~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~a  126 (339)
T 2x5j_O           80 ERSLQSLPWRE----LGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPG  126 (339)
T ss_dssp             CSSGGGCCHHH----HTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCC
T ss_pred             cCChHHCcccc----cCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccc
Confidence             3444431 10    2689999999888889999999999987 5565555

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.15  E-value=1.7e-06  Score=78.93  Aligned_cols=112  Identities=15%  Similarity=0.119  Sum_probs=71.1

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      ||+||+|+|++|+||+.+++.+.+ .+++++ ++|++.  .....+.    +.|+.+. +.++++      .++|+||.+
T Consensus        10 mmm~I~iIG~tG~mG~~la~~l~~-~g~~V~-~~~r~~--~~~~~~~----~~g~~~~-~~~~~~------~~aDvVi~a   74 (286)
T 3c24_A           10 GPKTVAILGAGGKMGARITRKIHD-SAHHLA-AIEIAP--EGRDRLQ----GMGIPLT-DGDGWI------DEADVVVLA   74 (286)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHH-SSSEEE-EECCSH--HHHHHHH----HTTCCCC-CSSGGG------GTCSEEEEC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHH----hcCCCcC-CHHHHh------cCCCEEEEc
Confidence            568999999779999999998875 567876 577542  1222222    1344333 555665      379999999


Q ss_pred             CCchhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE-EcCCC
Q 022057          114 TDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTL  165 (303)
Q Consensus       114 T~p~a~~~~~~~al~---~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv-~a~N~  165 (303)
                      .+|..+.+.+.....   .+.-+|..++|.+.+.   +.++  ..+..++ ..||+
T Consensus        75 v~~~~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~---l~~~--~~~~~~v~~~P~~  125 (286)
T 3c24_A           75 LPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAG---VMPE--RADITYFIGHPCH  125 (286)
T ss_dssp             SCHHHHHHHHHHHGGGSCTTCEEEESCSHHHHHT---CSCC--CTTSEEEEEEECC
T ss_pred             CCchHHHHHHHHHHHhCCCCCEEEECCCCchhHH---HHhh--hCCCeEEecCCCC
Confidence            988887777765543   3444555556664322   3332  2346777 66776

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=98.14  E-value=6.1e-06  Score=78.62  Aligned_cols=98  Identities=16%  Similarity=0.170  Sum_probs=72.3

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC-------CCeeec-CCHHHHHhccccCC
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-------LEIPVM-SDLTMVLGSISQSK  105 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~-------~gv~v~-~dl~~~l~~~~~~~  105 (303)
                      +++||+|+|+||-.|+.+++.+.++|.+||+.+..++..|+...+...+...       .+..+. .+.++ +      .
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~-~------~   78 (359)
T 4dpl_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL-M------D   78 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG-C------T
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHH-h------c
Confidence            4699999999999999999999999999999998776677776653211000       012221 12222 2      4


Q ss_pred             CccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       106 ~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT  138 (303)
                      ++|+|+.++......+.+..+++.|+.+|.=+.
T Consensus        79 ~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa  111 (359)
T 4dpl_A           79 DVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSP  111 (359)
T ss_dssp             TCCEEEECCCTTTHHHHHHHHHHTTCEEEECSS
T ss_pred             CCCEEEECCChHHHHHHHHHHHHCCCEEEEcCC
Confidence            799999888888889999999999998886553

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=98.14  E-value=6.1e-06  Score=78.62  Aligned_cols=98  Identities=16%  Similarity=0.170  Sum_probs=72.3

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC-------CCeeec-CCHHHHHhccccCC
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-------LEIPVM-SDLTMVLGSISQSK  105 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~-------~gv~v~-~dl~~~l~~~~~~~  105 (303)
                      +++||+|+|+||-.|+.+++.+.++|.+||+.+..++..|+...+...+...       .+..+. .+.++ +      .
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~-~------~   78 (359)
T 4dpk_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL-M------D   78 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG-C------T
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHH-h------c
Confidence            4699999999999999999999999999999998776677776653211000       012221 12222 2      4


Q ss_pred             CccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       106 ~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT  138 (303)
                      ++|+|+.++......+.+..+++.|+.+|.=+.
T Consensus        79 ~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa  111 (359)
T 4dpk_A           79 DVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSP  111 (359)
T ss_dssp             TCCEEEECCCTTTHHHHHHHHHHTTCEEEECSS
T ss_pred             CCCEEEECCChHHHHHHHHHHHHCCCEEEEcCC
Confidence            799999888888889999999999998886553

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.13  E-value=2.6e-05  Score=71.61  Aligned_cols=112  Identities=14%  Similarity=0.088  Sum_probs=75.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ++||+|+|+ |.||+.+++.+.+ .+++++ ++|++.  ..+..+.    +.|+..++|+++++      . +|+||-+.
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~------~-aDvvi~~v   78 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTE-WPGGVT-VYDIRI--EAMTPLA----EAGATLADSVADVA------A-ADLIHITV   78 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTT-STTCEE-EECSST--TTSHHHH----HTTCEECSSHHHHT------T-SSEEEECC
T ss_pred             CCeEEEECc-CHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHH----HCCCEEcCCHHHHH------h-CCEEEEEC
Confidence            469999997 9999999998875 577765 467643  2222332    34677788999987      5 99999777


Q ss_pred             C-chhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057          115 D-ASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus       115 ~-p~a~~~~~~~al~---~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                      + +..+.+.+...++   .|. +|+-++...+...+++.+..++.++.++-+|
T Consensus        79 p~~~~~~~v~~~l~~~l~~g~-ivv~~st~~~~~~~~~~~~~~~~g~~~~~~p  130 (296)
T 3qha_A           79 LDDAQVREVVGELAGHAKPGT-VIAIHSTISDTTAVELARDLKARDIHIVDAP  130 (296)
T ss_dssp             SSHHHHHHHHHHHHTTCCTTC-EEEECSCCCHHHHHHHHHHHGGGTCEEEECC
T ss_pred             CChHHHHHHHHHHHHhcCCCC-EEEEeCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence            5 4455555554443   344 4555555556666777777777677666554

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.13  E-value=1.5e-05  Score=72.86  Aligned_cols=114  Identities=9%  Similarity=0.103  Sum_probs=75.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc---EEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM---EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~---eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ++||+|+|+ |+||+.+++.+.+. ++   + +.++|++.  ..+..+.   ..+|+.++.|..+++      .++|+||
T Consensus         3 ~~~I~iIG~-G~mG~aia~~l~~~-g~~~~~-V~v~dr~~--~~~~~l~---~~~gi~~~~~~~~~~------~~aDvVi   68 (280)
T 3tri_A            3 TSNITFIGG-GNMARNIVVGLIAN-GYDPNR-ICVTNRSL--DKLDFFK---EKCGVHTTQDNRQGA------LNADVVV   68 (280)
T ss_dssp             CSCEEEESC-SHHHHHHHHHHHHT-TCCGGG-EEEECSSS--HHHHHHH---HTTCCEEESCHHHHH------SSCSEEE
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHC-CCCCCe-EEEEeCCH--HHHHHHH---HHcCCEEeCChHHHH------hcCCeEE
Confidence            479999998 99999999988864 34   4 44677653  2333333   246788888988888      4799999


Q ss_pred             EcCCchhHHHHHHHHHHc---CCCeEEeC-CCCCHHHHHHHHHHhhhcCCeEE-EcCCCc
Q 022057          112 DFTDASTVYDNVKQATAF---GMRSVVYV-PHIQLETVSALSAFCDKASMGCL-IAPTLS  166 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~---g~~vVigT-TG~~~e~~~~L~~~a~~~~i~vv-~a~N~S  166 (303)
                      -+..|+...+.+......   +..+|+.. .|.+.+.   |.+.... +.+++ .-||..
T Consensus        69 lav~p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~---l~~~l~~-~~~vvr~mPn~p  124 (280)
T 3tri_A           69 LAVKPHQIKMVCEELKDILSETKILVISLAVGVTTPL---IEKWLGK-ASRIVRAMPNTP  124 (280)
T ss_dssp             ECSCGGGHHHHHHHHHHHHHTTTCEEEECCTTCCHHH---HHHHHTC-CSSEEEEECCGG
T ss_pred             EEeCHHHHHHHHHHHHhhccCCCeEEEEecCCCCHHH---HHHHcCC-CCeEEEEecCCh
Confidence            999998887777655433   34466654 4888654   4444432 23443 236643

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=98.11  E-value=8.6e-06  Score=72.23  Aligned_cols=93  Identities=19%  Similarity=0.215  Sum_probs=69.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhh-hhcCCCCCCeeec--CCHHHHHhccccCCCccEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGM-VCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~~~-~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVv  110 (303)
                      +.||+|+|| |++|+.+++.+. ...+++++|++|.+.. ...+. .     -.|+|++  +++++++++    .++|++
T Consensus        84 ~~~V~IvGa-G~lG~aLa~~~~~~~~g~~iVg~~D~dp~-~kiG~~~-----i~GvpV~~~~dL~~~v~~----~~Id~v  152 (212)
T 3keo_A           84 TTNVMLVGC-GNIGRALLHYRFHDRNKMQISMAFDLDSN-DLVGKTT-----EDGIPVYGISTINDHLID----SDIETA  152 (212)
T ss_dssp             CEEEEEECC-SHHHHHHTTCCCCTTSSEEEEEEEECTTS-TTTTCBC-----TTCCBEEEGGGHHHHC-C----CSCCEE
T ss_pred             CCEEEEECc-CHHHHHHHHhhhcccCCeEEEEEEeCCch-hccCcee-----ECCeEEeCHHHHHHHHHH----cCCCEE
Confidence            579999999 999999999742 4578999999996531 01121 1     1356664  577777764    689999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057          111 IDFTDASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~vVigTT  138 (303)
                      |.+++.....+.+..+.++|++-+.--|
T Consensus       153 IIAvPs~~aq~v~d~lv~~GIk~I~nFa  180 (212)
T 3keo_A          153 ILTVPSTEAQEVADILVKAGIKGILSFS  180 (212)
T ss_dssp             EECSCGGGHHHHHHHHHHHTCCEEEECS
T ss_pred             EEecCchhHHHHHHHHHHcCCCEEEEcC
Confidence            9888777778999999999999887544

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.11  E-value=3.4e-06  Score=74.22  Aligned_cols=124  Identities=19%  Similarity=0.054  Sum_probs=74.6

Q ss_pred             CCCCC-ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc
Q 022057           30 NPPQS-NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (303)
Q Consensus        30 ~~~~~-~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (303)
                      ++.-| ||||+|+|+ |+||+.+++.+.+ .+++++.++|++.  ..+..+.   ..+++..+.+..+.+      .++|
T Consensus        17 ~~~~m~mmkI~IIG~-G~mG~~la~~l~~-~g~~V~~v~~r~~--~~~~~l~---~~~g~~~~~~~~~~~------~~aD   83 (220)
T 4huj_A           17 NLYFQSMTTYAIIGA-GAIGSALAERFTA-AQIPAIIANSRGP--ASLSSVT---DRFGASVKAVELKDA------LQAD   83 (220)
T ss_dssp             CTTGGGSCCEEEEEC-HHHHHHHHHHHHH-TTCCEEEECTTCG--GGGHHHH---HHHTTTEEECCHHHH------TTSS
T ss_pred             chhhhcCCEEEEECC-CHHHHHHHHHHHh-CCCEEEEEECCCH--HHHHHHH---HHhCCCcccChHHHH------hcCC
Confidence            34333 689999997 9999999998875 4778887677642  2222222   123444444444455      4799


Q ss_pred             EEEEcCCchhHHHHHHHHHH-cCCCeEEeCCCCC-----HH------HHHHHHHHhhhcCCeEEEc-CCCcHH
Q 022057          109 VVIDFTDASTVYDNVKQATA-FGMRSVVYVPHIQ-----LE------TVSALSAFCDKASMGCLIA-PTLSIG  168 (303)
Q Consensus       109 VvIDfT~p~a~~~~~~~al~-~g~~vVigTTG~~-----~e------~~~~L~~~a~~~~i~vv~a-~N~SiG  168 (303)
                      +||-+++|..+.+.+..... .++.+|.-+.|+.     .+      ..+.|.+....  .+++.+ ||+...
T Consensus        84 vVilavp~~~~~~v~~~l~~~~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~--~~vv~~~~~~~~~  154 (220)
T 4huj_A           84 VVILAVPYDSIADIVTQVSDWGGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPG--AKVVKAFNTLPAA  154 (220)
T ss_dssp             EEEEESCGGGHHHHHTTCSCCTTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTT--CEEEEESCSSCHH
T ss_pred             EEEEeCChHHHHHHHHHhhccCCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCC--CCEEECCCCCCHH
Confidence            99999988888877764422 2444444443662     10      33456555533  466655 444433

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=98.09  E-value=8.8e-06  Score=77.30  Aligned_cols=98  Identities=14%  Similarity=0.068  Sum_probs=68.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC-----CcEEEEEEecCCCCcchhhhhcCCCC-CCeeec-CCHHHHHhccccCCCc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR-----GMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVM-SDLTMVLGSISQSKAR  107 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~-----~~eLvg~vd~~~~g~d~~~~~g~~~~-~gv~v~-~dl~~~l~~~~~~~~~  107 (303)
                      |+||+|+|++|.+|+.+++.+.+++     ++|++.+.++...|+...+..+.... ..+.+. .+.+ .+      .++
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~-~~------~~~   81 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAA-VL------GGH   81 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHH-HH------TTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHH-Hh------cCC
Confidence            5899999999999999999999988     89999988765445544332110000 122221 1333 33      379


Q ss_pred             cEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (303)
Q Consensus       108 DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~  140 (303)
                      |+|+.++......+.+..+ +.|+.+|.-+..+
T Consensus        82 DvVf~alg~~~s~~~~~~~-~~G~~vIDlSa~~  113 (352)
T 2nqt_A           82 DAVFLALPHGHSAVLAQQL-SPETLIIDCGADF  113 (352)
T ss_dssp             SEEEECCTTSCCHHHHHHS-CTTSEEEECSSTT
T ss_pred             CEEEECCCCcchHHHHHHH-hCCCEEEEECCCc
Confidence            9999777777789999988 9998877655544

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=98.08  E-value=8.2e-06  Score=77.95  Aligned_cols=95  Identities=15%  Similarity=0.135  Sum_probs=68.6

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeecC-CHHHHHhccccCCCccEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVV  110 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVv  110 (303)
                      |++||+|+|+||..|+.+++.+.++  |..+|+.+..+...|+... +.+    .+..+.+ +.+ .+      .++|+|
T Consensus         1 m~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~-~~~----~~~~~~~~~~~-~~------~~~Dvv   68 (366)
T 3pwk_A            1 MGYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLK-FKD----QDITIEETTET-AF------EGVDIA   68 (366)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEE-ETT----EEEEEEECCTT-TT------TTCSEE
T ss_pred             CCcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcce-ecC----CCceEeeCCHH-Hh------cCCCEE
Confidence            6799999999999999999988876  8889988776555555443 111    1222211 112 23      479999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~vVigTTG~  140 (303)
                      +.++......+.+..+++.|+.+|.-+..|
T Consensus        69 f~a~~~~~s~~~a~~~~~~G~~vIDlSa~~   98 (366)
T 3pwk_A           69 LFSAGSSTSAKYAPYAVKAGVVVVDNTSYF   98 (366)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCEEEECSSTT
T ss_pred             EECCChHhHHHHHHHHHHCCCEEEEcCCcc
Confidence            988888888999999999999887665543

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.08  E-value=1.4e-05  Score=72.68  Aligned_cols=116  Identities=15%  Similarity=0.100  Sum_probs=75.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |||+|+|+ |.||+.+++.+.+ .++++. ++|++.  .....+.    +.|+.++.+++++++      ++|+||.+++
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~-~g~~V~-~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~------~~Dvvi~~vp   65 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMK-HGYPLI-IYDVFP--DACKEFQ----DAGEQVVSSPADVAE------KADRIITMLP   65 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHH-TTCCEE-EECSST--HHHHHHH----TTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             CeEEEEec-cHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCC
Confidence            48999998 9999999998875 467765 567642  2223332    346777889988874      6899998874


Q ss_pred             -chhHHHHHHH------HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHH
Q 022057          116 -ASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (303)
Q Consensus       116 -p~a~~~~~~~------al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiG  168 (303)
                       |....+.+..      .++.|. +|+-++|.+.+..+++.+...+.++..+-+ ..+.|
T Consensus        66 ~~~~~~~v~~~~~~~~~~l~~~~-~vv~~s~~~~~~~~~~~~~~~~~g~~~~~~-p~~~g  123 (296)
T 2gf2_A           66 TSINAIEAYSGANGILKKVKKGS-LLIDSSTIDPAVSKELAKEVEKMGAVFMDA-PVSGG  123 (296)
T ss_dssp             SHHHHHHHHHSTTSGGGTCCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEEEEC-CEESH
T ss_pred             CHHHHHHHHhCchhHHhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCEEEEc-CCCCC
Confidence             4455554442      123455 444577888877777766665545443333 34555

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=98.07  E-value=6.5e-06  Score=77.72  Aligned_cols=93  Identities=16%  Similarity=0.173  Sum_probs=65.7

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHH-HHHhccccCCCccEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVV  110 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVv  110 (303)
                      |+|||+|+|++|++|+.+++.+.  ..|.++|+++.++...|+... +.|    ..+.+. +++ +.+      .++|+|
T Consensus         5 m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~-~~g----~~i~~~-~~~~~~~------~~~DvV   72 (340)
T 2hjs_A            5 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG-FAE----SSLRVG-DVDSFDF------SSVGLA   72 (340)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE-ETT----EEEECE-EGGGCCG------GGCSEE
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccc-cCC----cceEEe-cCCHHHh------cCCCEE
Confidence            45899999999999999999998  568999998887544343221 111    122221 221 112      368999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057          111 IDFTDASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~vVigTT  138 (303)
                      +.++......+.+..+++.|+.+|.-+.
T Consensus        73 ~~a~g~~~s~~~a~~~~~aG~kvId~Sa  100 (340)
T 2hjs_A           73 FFAAAAEVSRAHAERARAAGCSVIDLSG  100 (340)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCEEEETTC
T ss_pred             EEcCCcHHHHHHHHHHHHCCCEEEEeCC
Confidence            9888888889999999999998775443

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=98.07  E-value=2e-05  Score=72.80  Aligned_cols=118  Identities=12%  Similarity=0.056  Sum_probs=76.2

Q ss_pred             CCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE
Q 022057           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (303)
Q Consensus        30 ~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (303)
                      ++..+++||+|+|+ |.||+.+++.+.+ .+++++ ++|++.  ..+..+.    +.|+..++|++++++      ++|+
T Consensus         4 ~~~~~~~~IgiIG~-G~mG~~~A~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~e~~~------~aDv   68 (306)
T 3l6d_A            4 SDESFEFDVSVIGL-GAMGTIMAQVLLK-QGKRVA-IWNRSP--GKAAALV----AAGAHLCESVKAALS------ASPA   68 (306)
T ss_dssp             CCCCCSCSEEEECC-SHHHHHHHHHHHH-TTCCEE-EECSSH--HHHHHHH----HHTCEECSSHHHHHH------HSSE
T ss_pred             CcccCCCeEEEECC-CHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCE
Confidence            44556789999997 9999999998875 567766 467642  2222232    236677889999884      6899


Q ss_pred             EEEcCCchh-HHHHHH----HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057          110 VIDFTDAST-VYDNVK----QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus       110 vIDfT~p~a-~~~~~~----~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                      ||-+.++.. +.+.+.    ..+..|.-+| -++..+++..+++.+..++.++.++=+|
T Consensus        69 Vi~~vp~~~~~~~v~~~~~l~~~~~g~ivi-d~st~~~~~~~~l~~~~~~~g~~~vdap  126 (306)
T 3l6d_A           69 TIFVLLDNHATHEVLGMPGVARALAHRTIV-DYTTNAQDEGLALQGLVNQAGGHYVKGM  126 (306)
T ss_dssp             EEECCSSHHHHHHHHTSTTHHHHTTTCEEE-ECCCCCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEeCCHHHHHHHhcccchhhccCCCEEE-ECCCCCHHHHHHHHHHHHHcCCeEEecc
Confidence            997775443 444432    2234454444 4444445566677777777777766553

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.06  E-value=4.2e-06  Score=74.69  Aligned_cols=99  Identities=9%  Similarity=0.108  Sum_probs=65.9

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCc----EEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGM----EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~----eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (303)
                      ||+||+|+|+ |+||+.+++.+.+. ++    ++. ++|++.  ..+..+.   ..+++.++.|.+++++      ++|+
T Consensus         1 M~~~i~iIG~-G~mG~~~a~~l~~~-g~~~~~~V~-~~~r~~--~~~~~~~---~~~g~~~~~~~~e~~~------~aDv   66 (247)
T 3gt0_A            1 MDKQIGFIGC-GNMGMAMIGGMINK-NIVSSNQII-CSDLNT--ANLKNAS---EKYGLTTTTDNNEVAK------NADI   66 (247)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHT-TSSCGGGEE-EECSCH--HHHHHHH---HHHCCEECSCHHHHHH------HCSE
T ss_pred             CCCeEEEECc-cHHHHHHHHHHHhC-CCCCCCeEE-EEeCCH--HHHHHHH---HHhCCEEeCChHHHHH------hCCE
Confidence            5689999998 99999999998854 44    444 577642  2222232   1346778889999884      6999


Q ss_pred             EEEcCCchhHHHHHHHHHH---cCCCeEEeCCCCCHHHHH
Q 022057          110 VIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVS  146 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~---~g~~vVigTTG~~~e~~~  146 (303)
                      ||-++.|....+.+.....   .+.-+|.-+.|.+.+.++
T Consensus        67 Vilav~~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~  106 (247)
T 3gt0_A           67 LILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSIESTE  106 (247)
T ss_dssp             EEECSCTTTHHHHC---CCSSCTTCEEEECSCCSCHHHHH
T ss_pred             EEEEeCHHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHH
Confidence            9999988887777765433   233344445588865443

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.05  E-value=2.8e-05  Score=76.47  Aligned_cols=130  Identities=15%  Similarity=0.107  Sum_probs=89.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----cC---CHHHHHhccccCCCc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MS---DLTMVLGSISQSKAR  107 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~~---dl~~~l~~~~~~~~~  107 (303)
                      +.||+|+|+ |.+|+.++..+.+.++.++ .+++++.  ..+..++.   ..++..    ..   ++++++      .++
T Consensus        23 ~k~VlIiGA-GgiG~aia~~L~~~~g~~V-~v~~R~~--~ka~~la~---~~~~~~~~~D~~d~~~l~~~l------~~~   89 (467)
T 2axq_A           23 GKNVLLLGS-GFVAQPVIDTLAANDDINV-TVACRTL--ANAQALAK---PSGSKAISLDVTDDSALDKVL------ADN   89 (467)
T ss_dssp             CEEEEEECC-STTHHHHHHHHHTSTTEEE-EEEESSH--HHHHHHHG---GGTCEEEECCTTCHHHHHHHH------HTS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHhCCCCeE-EEEECCH--HHHHHHHH---hcCCcEEEEecCCHHHHHHHH------cCC
Confidence            568999998 9999999999998778874 4566642  22233331   112211    12   344555      379


Q ss_pred             cEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHH--HHHHHHHHh
Q 022057          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI--LLQQAAISA  179 (303)
Q Consensus       108 DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~--ll~~~a~~~  179 (303)
                      |+||..+.+....+....|++.|++++. .+-+++ ....+.+.|++.|+.++-...|..|+.  +..+++.++
T Consensus        90 DvVIn~tp~~~~~~v~~a~l~~g~~vvd-~~~~~p-~~~~Ll~~Ak~aGv~~i~g~G~~PG~~~~~a~~li~q~  161 (467)
T 2axq_A           90 DVVISLIPYTFHPNVVKSAIRTKTDVVT-SSYISP-ALRELEPEIVKAGITVMNEIGLDPGIDHLYAVKTIDEV  161 (467)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHHTCEEEE-CSCCCH-HHHHHHHHHHHHTCEEECSCBBTTBHHHHHHHHHHHHH
T ss_pred             CEEEECCchhhhHHHHHHHHhcCCEEEE-eecCCH-HHHHHHHHHHHcCCEEEecCCcCccchHHHHHHHHHHH
Confidence            9999998877677788899999999885 333444 346788888888999888887866763  335555555

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.03  E-value=1.6e-05  Score=71.81  Aligned_cols=113  Identities=13%  Similarity=-0.011  Sum_probs=70.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      |+||+|+|+ |.||+.++..+.+  +++++ ++|++.  .....+.    +.|+..++ +++++      .++|+||.++
T Consensus         1 M~~i~iiG~-G~~G~~~a~~l~~--g~~V~-~~~~~~--~~~~~~~----~~g~~~~~-~~~~~------~~~D~vi~~v   63 (289)
T 2cvz_A            1 MEKVAFIGL-GAMGYPMAGHLAR--RFPTL-VWNRTF--EKALRHQ----EEFGSEAV-PLERV------AEARVIFTCL   63 (289)
T ss_dssp             -CCEEEECC-STTHHHHHHHHHT--TSCEE-EECSST--HHHHHHH----HHHCCEEC-CGGGG------GGCSEEEECC
T ss_pred             CCeEEEEcc-cHHHHHHHHHHhC--CCeEE-EEeCCH--HHHHHHH----HCCCcccC-HHHHH------hCCCEEEEeC
Confidence            469999998 9999999998885  78864 577642  2222222    12344444 56666      3799999888


Q ss_pred             Cchh-HHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057          115 DAST-VYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       115 ~p~a-~~~~~~~a---l~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      ++.. ..+.+...   ++.|..+|..++ ......++|.+..++.++.++-+|++
T Consensus        64 ~~~~~~~~v~~~l~~~l~~~~~vv~~s~-~~~~~~~~l~~~~~~~g~~~~~~p~~  117 (289)
T 2cvz_A           64 PTTREVYEVAEALYPYLREGTYWVDATS-GEPEASRRLAERLREKGVTYLDAPVS  117 (289)
T ss_dssp             SSHHHHHHHHHHHTTTCCTTEEEEECSC-CCHHHHHHHHHHHHTTTEEEEECCEE
T ss_pred             CChHHHHHHHHHHHhhCCCCCEEEECCC-CCHHHHHHHHHHHHHcCCEEEEecCC
Confidence            7554 44444333   234555554333 44455567777777667777777754

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=98.03  E-value=1.7e-05  Score=76.11  Aligned_cols=100  Identities=20%  Similarity=0.146  Sum_probs=70.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCCCC-------CCeeecC-CHHHHHhccccCC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQP-------LEIPVMS-DLTMVLGSISQSK  105 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~g~d~~~~~g~~~~-------~gv~v~~-dl~~~l~~~~~~~  105 (303)
                      |+||+|+|+||-.|+.+++.+.++|.++|+.+.. ++..|+...+...+...       ....+.+ +.++.+      .
T Consensus        19 ~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~------~   92 (381)
T 3hsk_A           19 VKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNF------L   92 (381)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTG------G
T ss_pred             ccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhc------c
Confidence            5899999999999999999999999999998864 44567776543211000       0111111 111123      3


Q ss_pred             CccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (303)
Q Consensus       106 ~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~  140 (303)
                      ++|+|+.++......+.+..+++.|+.+|.=+..|
T Consensus        93 ~~Dvvf~alp~~~s~~~~~~~~~~G~~VIDlSa~f  127 (381)
T 3hsk_A           93 ECDVVFSGLDADVAGDIEKSFVEAGLAVVSNAKNY  127 (381)
T ss_dssp             GCSEEEECCCHHHHHHHHHHHHHTTCEEEECCSTT
T ss_pred             cCCEEEECCChhHHHHHHHHHHhCCCEEEEcCCcc
Confidence            68999977777778999999999999988765543

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=98.02  E-value=7.5e-06  Score=77.89  Aligned_cols=105  Identities=19%  Similarity=0.157  Sum_probs=64.9

Q ss_pred             cCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe-cCCCCcc---------hhhhhcC----CCC-----CCee
Q 022057           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGED---------IGMVCDM----EQP-----LEIP   89 (303)
Q Consensus        29 ~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~g~d---------~~~~~g~----~~~-----~gv~   89 (303)
                      ++++. |+||+|+|+ |++|+.+++.+.++|++||+++-| ....+.-         -+.+.+.    +..     ..++
T Consensus        12 ~~~~~-~ikVgI~G~-G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~   89 (354)
T 3cps_A           12 ENLYF-QGTLGINGF-GRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVK   89 (354)
T ss_dssp             -------CEEEEECC-SHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEE
T ss_pred             cCcCc-ceEEEEECC-CHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEE
Confidence            34433 689999999 999999999999999999999988 2211100         0001000    000     0223


Q ss_pred             ecC--CHHHHH-hccccCCCccEEEEcCCchhHHHHHHHHHHcCCC-eEEeCCC
Q 022057           90 VMS--DLTMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPH  139 (303)
Q Consensus        90 v~~--dl~~~l-~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~-vVigTTG  139 (303)
                      ++.  |++++. .+    .++|+|+++|......+.+...++.|.. +||-.++
T Consensus        90 v~~~~dp~~i~w~~----~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~pa  139 (354)
T 3cps_A           90 VFQAKDPAEIPWGA----SGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPP  139 (354)
T ss_dssp             EECCSCGGGCCHHH----HTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCC
T ss_pred             EEecCChHHCCccc----CCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCCC
Confidence            332  444431 00    2689999999888889999999999974 6655443

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=98.01  E-value=1.9e-05  Score=71.85  Aligned_cols=115  Identities=16%  Similarity=0.131  Sum_probs=76.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      |+||+|+|+ |.||+.+++.+.+. ++++. ++|++.  ..+..+.    +.|+..++|++++++      ++|+||-+.
T Consensus         1 M~~I~iiG~-G~mG~~~a~~l~~~-G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~advvi~~v   65 (287)
T 3pdu_A            1 MTTYGFLGL-GIMGGPMAANLVRA-GFDVT-VWNRNP--AKCAPLV----ALGARQASSPAEVCA------ACDITIAML   65 (287)
T ss_dssp             CCCEEEECC-STTHHHHHHHHHHH-TCCEE-EECSSG--GGGHHHH----HHTCEECSCHHHHHH------HCSEEEECC
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHC-CCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHH------cCCEEEEEc
Confidence            569999997 99999999988854 67765 467642  2222232    236677889999884      689999777


Q ss_pred             Cch-hHHHHH---HHH---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057          115 DAS-TVYDNV---KQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       115 ~p~-a~~~~~---~~a---l~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      ++. .+.+.+   ...   ++.|. +|+-++..++...+++.+..++.++.++-+|.+
T Consensus        66 ~~~~~~~~v~~~~~~l~~~l~~g~-~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~  122 (287)
T 3pdu_A           66 ADPAAAREVCFGANGVLEGIGGGR-GYIDMSTVDDETSTAIGAAVTARGGRFLEAPVS  122 (287)
T ss_dssp             SSHHHHHHHHHSTTCGGGTCCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             CCHHHHHHHHcCchhhhhcccCCC-EEEECCCCCHHHHHHHHHHHHHcCCEEEECCcc
Confidence            654 455554   222   23444 455555556666677777777777776666544

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=98.00  E-value=3.7e-05  Score=73.34  Aligned_cols=93  Identities=13%  Similarity=0.052  Sum_probs=63.3

Q ss_pred             ceeEEEEcCCcHHHHHHHH-HHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeec--CCHHHHHhccccCCCccE
Q 022057           35 NIKVIINGAVKEIGRAAVI-AVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAV  109 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~-~i~~~--~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DV  109 (303)
                      |+||+|+|++|++|+.+++ .+.++  |..++..+..+ ..|+....+.|    ..+.+.  .+.++ +      .++|+
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~-s~G~~v~~~~g----~~i~~~~~~~~~~-~------~~~Dv   68 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS-QLGQAAPSFGG----TTGTLQDAFDLEA-L------KALDI   68 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-STTSBCCGGGT----CCCBCEETTCHHH-H------HTCSE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC-CCCCCccccCC----CceEEEecCChHH-h------cCCCE
Confidence            5799999999999999999 55443  23566554433 35654432222    123332  24444 3      27999


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCC-eEEeCCC
Q 022057          110 VIDFTDASTVYDNVKQATAFGMR-SVVYVPH  139 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~g~~-vVigTTG  139 (303)
                      |++++......+.+..+++.|+. +||.-++
T Consensus        69 Vf~a~g~~~s~~~a~~~~~~G~k~vVID~ss   99 (367)
T 1t4b_A           69 IVTCQGGDYTNEIYPKLRESGWQGYWIDAAS   99 (367)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             EEECCCchhHHHHHHHHHHCCCCEEEEcCCh
Confidence            99999888899999999999974 6776553

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=98.00  E-value=7.5e-05  Score=68.94  Aligned_cols=117  Identities=14%  Similarity=0.139  Sum_probs=77.7

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |.-||+++|. |.||..+++.+.+ .+++|+ ++|++.  .....+    .+.|+...+++.++.      .++|+||-+
T Consensus         4 Ms~kIgfIGL-G~MG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l----~~~G~~~~~s~~e~~------~~~dvvi~~   68 (297)
T 4gbj_A            4 MSEKIAFLGL-GNLGTPIAEILLE-AGYELV-VWNRTA--SKAEPL----TKLGATVVENAIDAI------TPGGIVFSV   68 (297)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHH-TTCEEE-EC---------CTT----TTTTCEECSSGGGGC------CTTCEEEEC
T ss_pred             CCCcEEEEec-HHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHH----HHcCCeEeCCHHHHH------hcCCceeee
Confidence            4469999997 9999999999884 688877 477642  122223    256788888999987      478998865


Q ss_pred             CCc-hhHHHH----HHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057          114 TDA-STVYDN----VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus       114 T~p-~a~~~~----~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                      -++ ..+.+.    +...+..|. ++|-.+..+++..+++.+.+++.|+..+=+|=+.
T Consensus        69 l~~~~~~~~v~~~~~~~~~~~~~-iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsG  125 (297)
T 4gbj_A           69 LADDAAVEELFSMELVEKLGKDG-VHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFA  125 (297)
T ss_dssp             CSSHHHHHHHSCHHHHHHHCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEEEECCEEC
T ss_pred             ccchhhHHHHHHHHHHhhcCCCe-EEEECCCCChHHHHHHHHHHHhcCCceecCCcCC
Confidence            543 333332    223333443 5555555667888899999998898888776543

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=97.99  E-value=1.6e-05  Score=74.99  Aligned_cols=101  Identities=24%  Similarity=0.198  Sum_probs=67.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcc-----h----hhhhcCC----CCC-----CeeecC--CH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED-----I----GMVCDME----QPL-----EIPVMS--DL   94 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d-----~----~~~~g~~----~~~-----gv~v~~--dl   94 (303)
                      |+||+|+|+ |++|+.+.+++.++|++||+++-|....+.-     .    +.+.+.-    ..+     .+.++.  |+
T Consensus         1 ~ikVgI~G~-G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp   79 (330)
T 1gad_O            1 TIKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP   79 (330)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             CeEEEEECc-CHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCCh
Confidence            589999996 9999999999999999999999875221110     0    0010000    000     112332  34


Q ss_pred             HHHH-hccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057           95 TMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (303)
Q Consensus        95 ~~~l-~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~  140 (303)
                      +++- ..    .++|+|+++|......+.+...++.|..+|+=+..+
T Consensus        80 ~~i~w~~----~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~  122 (330)
T 1gad_O           80 ANLKWDE----VGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS  122 (330)
T ss_dssp             GGGCHHH----HTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             hhCcccc----ccCCEEEECCCccccHHHHHHHHHCCCEEEEECCCC
Confidence            4431 00    268999999988888999999999999987655433

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=97.99  E-value=1.8e-05  Score=75.26  Aligned_cols=97  Identities=15%  Similarity=0.091  Sum_probs=69.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeec-CCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |+||+|+|+||..|+.+++.+.++|.+||+.+.+....|+...+...... ....+. .+.+++.+      ++|+++-+
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~-~~l~~~~~~~~~~~~------~~Dvvf~a   85 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTL-ENSILSEFDPEKVSK------NCDVLFTA   85 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGC-CCCBCBCCCHHHHHH------HCSEEEEC
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhc-cCceEEeCCHHHhhc------CCCEEEEC
Confidence            89999999999999999999999999999998776667777765432111 223332 24555542      68999855


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTTG~  140 (303)
                      +..+...+.+..+  .|+.||--+..|
T Consensus        86 lp~~~s~~~~~~~--~g~~VIDlSsdf  110 (351)
T 1vkn_A           86 LPAGASYDLVREL--KGVKIIDLGADF  110 (351)
T ss_dssp             CSTTHHHHHHTTC--CSCEEEESSSTT
T ss_pred             CCcHHHHHHHHHh--CCCEEEECChhh
Confidence            5556668888777  788877655544

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.98  E-value=3.5e-05  Score=71.40  Aligned_cols=108  Identities=17%  Similarity=0.152  Sum_probs=71.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |+||+|+|+ |.||+.+++.+.+. ++ ++. ++|++........+    .+.|+..+++++++++      ++|+||-+
T Consensus        24 ~~~I~iIG~-G~mG~~~A~~L~~~-G~~~V~-~~dr~~~~~~~~~~----~~~g~~~~~~~~e~~~------~aDvVi~~   90 (312)
T 3qsg_A           24 AMKLGFIGF-GEAASAIASGLRQA-GAIDMA-AYDAASAESWRPRA----EELGVSCKASVAEVAG------ECDVIFSL   90 (312)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHH-SCCEEE-EECSSCHHHHHHHH----HHTTCEECSCHHHHHH------HCSEEEEC
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHC-CCCeEE-EEcCCCCHHHHHHH----HHCCCEEeCCHHHHHh------cCCEEEEe
Confidence            579999998 99999999998854 66 554 57763100111122    2457778889999884      68999988


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHhhhc
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKA  155 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG~~~e~~~~L~~~a~~~  155 (303)
                      .++....+.+....+.  .-.+|+-++...+....++.+..++.
T Consensus        91 vp~~~~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~  134 (312)
T 3qsg_A           91 VTAQAALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRH  134 (312)
T ss_dssp             SCTTTHHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             cCchhHHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhh
Confidence            8877777766655443  22466666666666666666665554

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=97.97  E-value=1.6e-05  Score=75.65  Aligned_cols=121  Identities=12%  Similarity=0.097  Sum_probs=81.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeec-----CC--------------HHH
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-----SD--------------LTM   96 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-----~d--------------l~~   96 (303)
                      .||+|+|+||.+|+..++.+.+.+++++++....... ..+.+.+   .+++.+++     .+              +.+
T Consensus         4 k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~n~-~~l~~q~---~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~e   79 (376)
T 3a06_A            4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHSNL-ELAFKIV---KEFNVKNVAITGDVEFEDSSINVWKGSHSIEE   79 (376)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESSCH-HHHHHHH---HHHTCCEEEECSSCCCCCSSSEEEESTTHHHH
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccCCH-HHHHHHH---HHcCCCEEEEccHHHHHHHHHHHccCHHHHHH
Confidence            7899999999999999999988878999998542110 0111111   11121111     12              245


Q ss_pred             HHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057           97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus        97 ~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                      ++..    .++|+|+..+.-.+.......|+++|+++.+..-...-..-+.+.++++++|+.++  |=.|
T Consensus        80 l~~~----~~~D~Vv~AivG~aGL~ptlaAi~aGK~vaLANKEsLV~aG~li~~~a~~~g~~ll--PVDS  143 (376)
T 3a06_A           80 MLEA----LKPDITMVAVSGFSGLRAVLASLEHSKRVCLANKESLVCGGFLVKKKLKEKGTELI--PVDS  143 (376)
T ss_dssp             HHHH----HCCSEEEECCCSTTHHHHHHHHHHHCSEEEECCSHHHHHHHHHHHHHHHHHCCEEE--ECSH
T ss_pred             HhcC----CCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEeChHHHHhhHHHHHHHHHHcCCEEE--EEcc
Confidence            5542    46899999998889999999999999999994332222334567788888776654  5566

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.97  E-value=5.5e-05  Score=70.34  Aligned_cols=113  Identities=11%  Similarity=0.060  Sum_probs=74.3

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCC-Cc---ch-hhhhcCCCCCCeeecC-CHHHHHhccccCC
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV-GE---DI-GMVCDMEQPLEIPVMS-DLTMVLGSISQSK  105 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~-g~---d~-~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~  105 (303)
                      +|++||+|+|+ |.||..++..+.+ .+ +++. ++|++.. -.   +. ..+.    +.|+  .+ +++++++      
T Consensus        22 ~M~m~IgvIG~-G~mG~~lA~~L~~-~G~~~V~-~~dr~~~~~~~~~~~~~~~~----~~g~--~~~s~~e~~~------   86 (317)
T 4ezb_A           22 SMMTTIAFIGF-GEAAQSIAGGLGG-RNAARLA-AYDLRFNDPAASGALRARAA----ELGV--EPLDDVAGIA------   86 (317)
T ss_dssp             TSCCEEEEECC-SHHHHHHHHHHHT-TTCSEEE-EECGGGGCTTTHHHHHHHHH----HTTC--EEESSGGGGG------
T ss_pred             ccCCeEEEECc-cHHHHHHHHHHHH-cCCCeEE-EEeCCCccccchHHHHHHHH----HCCC--CCCCHHHHHh------
Confidence            36789999997 9999999998885 46 7776 5776420 00   11 1111    2344  55 7778773      


Q ss_pred             CccEEEEcCCchhHHHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057          106 ARAVVIDFTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus       106 ~~DVvIDfT~p~a~~~~~~~al~~--g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      ++|+||-+.++....+.+......  .-.+|+-+++.++...+++.+..++.++..+
T Consensus        87 ~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~  143 (317)
T 4ezb_A           87 CADVVLSLVVGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFV  143 (317)
T ss_dssp             GCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEE
T ss_pred             cCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            799999888877777766555443  1246666666767777777777776665443

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.97  E-value=4.8e-05  Score=74.32  Aligned_cols=129  Identities=13%  Similarity=0.092  Sum_probs=86.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-ee-----ec--CCHHHHHhccccCCC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IP-----VM--SDLTMVLGSISQSKA  106 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g-v~-----v~--~dl~~~l~~~~~~~~  106 (303)
                      +.+|+|+|+ |.||+.+++.+.+ .+.+ +.+++++.  ..+..++.   .++ +.     +.  +++++++      .+
T Consensus         3 ~k~VlViGa-G~iG~~ia~~L~~-~G~~-V~v~~R~~--~~a~~la~---~~~~~~~~~~Dv~d~~~l~~~l------~~   68 (450)
T 1ff9_A            3 TKSVLMLGS-GFVTRPTLDVLTD-SGIK-VTVACRTL--ESAKKLSA---GVQHSTPISLDVNDDAALDAEV------AK   68 (450)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHT-TTCE-EEEEESSH--HHHHHTTT---TCTTEEEEECCTTCHHHHHHHH------TT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CcCE-EEEEECCH--HHHHHHHH---hcCCceEEEeecCCHHHHHHHH------cC
Confidence            468999996 9999999999884 6788 45566542  22222221   111 21     11  2344555      47


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHH--HHHHHHHHh
Q 022057          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI--LLQQAAISA  179 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~--ll~~~a~~~  179 (303)
                      +|+||.++.+..+.+....|++.|++++.. +-..+ ....+.++|++.|+.++...+|..|..  +..+++.+.
T Consensus        69 ~DvVIn~a~~~~~~~i~~a~l~~g~~vvd~-~~~~~-~~~~l~~aA~~aGv~~i~g~g~~pg~~~~~a~~li~q~  141 (450)
T 1ff9_A           69 HDLVISLIPYTFHATVIKSAIRQKKHVVTT-SYVSP-AMMELDQAAKDAGITVMNEIGLDPGIDHLYAIKTIEEV  141 (450)
T ss_dssp             SSEEEECCC--CHHHHHHHHHHHTCEEEES-SCCCH-HHHHTHHHHHHTTCEEECSCBBTTBHHHHHHHHHHHHH
T ss_pred             CcEEEECCccccchHHHHHHHhCCCeEEEe-ecccH-HHHHHHHHHHHCCCeEEeCCCCcCchHHHHHHHHHHHh
Confidence            999999987766667778899999998864 23333 456788899999999888888866663  446666655

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=97.96  E-value=1.5e-05  Score=75.27  Aligned_cols=99  Identities=22%  Similarity=0.187  Sum_probs=66.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEec-------------CCCCcchhhhh---cC---CCCCCeeec--
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDS-------------HSVGEDIGMVC---DM---EQPLEIPVM--   91 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~-------------~~~g~d~~~~~---g~---~~~~gv~v~--   91 (303)
                      |+||+|+|+ |++|+.+++.+.++  |++||+++-|.             +..|+-.++..   +-   .....++++  
T Consensus         1 ~ikVgInG~-G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~   79 (337)
T 1rm4_O            1 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSD   79 (337)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECC
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEec
Confidence            589999999 99999999999988  99999998852             11222111111   00   000112333  


Q ss_pred             CCHHHH-HhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057           92 SDLTMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus        92 ~dl~~~-l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT  138 (303)
                      .|++++ ..+    .++|+|+++|......+.+...++.|..+|+=+.
T Consensus        80 ~dp~~i~w~~----~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iSa  123 (337)
T 1rm4_O           80 RNPVNLPWGD----MGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITA  123 (337)
T ss_dssp             SCGGGSCHHH----HTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESS
T ss_pred             CChhhCcccc----cCCCEEEECCCchhhHHHHHHHHHcCCEEEEECC
Confidence            344433 111    2689999999888889999999999988887553

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.96  E-value=4e-05  Score=68.51  Aligned_cols=104  Identities=18%  Similarity=0.148  Sum_probs=69.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |||+|+|+ |.||+.+++.+.+ .++++.. +|+.........+.    +.|+.  +++++++.      ++|+||-+.+
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~-~g~~V~~-~~~~~~~~~~~~~~----~~g~~--~~~~~~~~------~aDvvi~~v~   65 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRS-RGVEVVT-SLEGRSPSTIERAR----TVGVT--ETSEEDVY------SCPVVISAVT   65 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHH-TTCEEEE-CCTTCCHHHHHHHH----HHTCE--ECCHHHHH------TSSEEEECSC
T ss_pred             CeEEEEec-hHHHHHHHHHHHH-CCCeEEE-eCCccCHHHHHHHH----HCCCc--CCHHHHHh------cCCEEEEECC
Confidence            48999998 9999999998875 5778776 55521111122222    12444  66777774      7999998888


Q ss_pred             chhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhh
Q 022057          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~  154 (303)
                      +....+.+......-.++|+-+++.+....++|.+...+
T Consensus        66 ~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~l~~~~~~  104 (264)
T 1i36_A           66 PGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEK  104 (264)
T ss_dssp             GGGHHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHHHhh
Confidence            876666666555544447777777777666777776655

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.94  E-value=8.5e-07  Score=80.72  Aligned_cols=94  Identities=9%  Similarity=0.026  Sum_probs=54.3

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |||||+|+|+ |+||+.+++.+.+.  ++++.++|++.  ..+..+.   ..+++ .+.|+++++      .++|+||.+
T Consensus         1 M~m~I~iIG~-G~mG~~la~~l~~~--~~v~~v~~~~~--~~~~~~~---~~~g~-~~~~~~~~~------~~~DvVila   65 (276)
T 2i76_A            1 MSLVLNFVGT-GTLTRFFLECLKDR--YEIGYILSRSI--DRARNLA---EVYGG-KAATLEKHP------ELNGVVFVI   65 (276)
T ss_dssp             ---CCEEESC-CHHHHHHHHTTC------CCCEECSSH--HHHHHHH---HHTCC-CCCSSCCCC------C---CEEEC
T ss_pred             CCceEEEEeC-CHHHHHHHHHHHHc--CcEEEEEeCCH--HHHHHHH---HHcCC-ccCCHHHHH------hcCCEEEEe
Confidence            5789999998 99999999988754  77767777642  1222222   12344 566777665      468999988


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCC-CCCHH
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLE  143 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTT-G~~~e  143 (303)
                      ++|..+.+.+......+. +|+-++ +.+.+
T Consensus        66 v~~~~~~~v~~~l~~~~~-ivi~~s~~~~~~   95 (276)
T 2i76_A           66 VPDRYIKTVANHLNLGDA-VLVHCSGFLSSE   95 (276)
T ss_dssp             SCTTTHHHHHTTTCCSSC-CEEECCSSSCGG
T ss_pred             CChHHHHHHHHHhccCCC-EEEECCCCCcHH
Confidence            888887776654432333 454554 44443

>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3

Probab=97.91  E-value=0.00013  Score=69.23  Aligned_cols=144  Identities=15%  Similarity=0.154  Sum_probs=94.8

Q ss_pred             CCCCCceeEEEEcCCcHHHHHHHHHHHhcC----------------------CcEEEEEEec--CCCCcchhhhhcCC--
Q 022057           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKAR----------------------GMEVAGAIDS--HSVGEDIGMVCDME--   83 (303)
Q Consensus        30 ~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~----------------------~~eLvg~vd~--~~~g~d~~~~~g~~--   83 (303)
                      ++.+.++||+|+|. |+.|++++.-+...+                      ++++++++|.  .+.|+++.+..-..  
T Consensus        10 ~~~~~~~rVaIVGv-GN~GsaLv~Gi~~yk~~~~~~~~~Gl~~~~~g~~~~~Di~iVaafDId~~KVG~~l~~A~~~~~n   88 (367)
T 1gr0_A           10 PEASTEVRVAIVGV-GNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAIFASEN   88 (367)
T ss_dssp             ----CCEEEEEECC-SHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTSBHHHHTTSTTC
T ss_pred             chhccCCCEEEECc-ChHHHHHHHHHHHHhccCcccccCCccccccCCccCCCeEEEEEEcCChHHHHHHhhCCEecCCC
Confidence            44455899999999 999999999666554                      7889999994  34566553321000  


Q ss_pred             --------CCCCee-----------------------ecCCHHHHHhccccCCCccEEEEcCC---chhHHHHHHHHHHc
Q 022057           84 --------QPLEIP-----------------------VMSDLTMVLGSISQSKARAVVIDFTD---ASTVYDNVKQATAF  129 (303)
Q Consensus        84 --------~~~gv~-----------------------v~~dl~~~l~~~~~~~~~DVvIDfT~---p~a~~~~~~~al~~  129 (303)
                              .+.++.                       ...|+.+.+++    .++||+|.+-+   -++..-++..|++.
T Consensus        89 ~~~~~~~v~~~~v~v~~g~~ldgia~~~~~~i~~s~~~~~Di~~~~~~----~~~dVvV~~lp~gs~~aS~~YA~Aal~a  164 (367)
T 1gr0_A           89 NTIKIADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALKE----AKVDVLVSYLPVGSEEADKFYAQCAIDA  164 (367)
T ss_dssp             CCCCCSCCCCCCCBCEECCCTTSCCHHHHTTSCBCSSCCCCHHHHHHH----TTCSEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             chhhhhcccccCceEccCCCCCchhhhhhhccccccchhhHHHHHHHH----hCCcEEEEeeeCCCcCHHHHHHHHHHHc
Confidence                    000100                       12255566654    78999998742   34445677889999


Q ss_pred             CCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCc--HHHHHHHHH-HHHhc
Q 022057          130 GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQA-AISAS  180 (303)
Q Consensus       130 g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~S--iGv~ll~~~-a~~~~  180 (303)
                      |++.|-++|-+... ...+.++++++|+| +..-.|=  .|..+|... +..+.
T Consensus       165 g~~fvN~~P~~~~~-~P~~~el~~~~g~p-i~GdD~Ksq~G~T~~k~~La~~l~  216 (367)
T 1gr0_A          165 GVAFVNALPVFIAS-DPVWAKKFTDARVP-IVGDDIKSQVGATITHRVLAKLFE  216 (367)
T ss_dssp             TCEEEECSSCCSTT-SHHHHHHHHHHTCE-EEESSBCCSSCHHHHHHHHHHHHH
T ss_pred             CCceEecCCccccC-CHHHHHHHHHcCCC-EeccccccccCCChHHHHHHHHHH
Confidence            99999999955431 13578889999998 5667766  899887554 44443

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=97.90  E-value=4.9e-05  Score=72.08  Aligned_cols=131  Identities=13%  Similarity=0.174  Sum_probs=77.8

Q ss_pred             ecCCCCC-ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh----------hcCCCCCCeeecCCHHH
Q 022057           28 STNPPQS-NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV----------CDMEQPLEIPVMSDLTM   96 (303)
Q Consensus        28 ~~~~~~~-~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~----------~g~~~~~gv~v~~dl~~   96 (303)
                      ..+|+.| +|||+|+|+ |.||..++..+.+ .+.++. +++++.  ..+..+          .|..-+.++.+++|+++
T Consensus        21 ~~~~m~~~~mkI~VIGa-G~mG~alA~~La~-~G~~V~-l~~r~~--~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~e   95 (356)
T 3k96_A           21 QSNAMEPFKHPIAILGA-GSWGTALALVLAR-KGQKVR-LWSYES--DHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKA   95 (356)
T ss_dssp             ------CCCSCEEEECC-SHHHHHHHHHHHT-TTCCEE-EECSCH--HHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHH
T ss_pred             hhhcccccCCeEEEECc-cHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHHHcCCCcccCCCCccCCCeEEECCHHH
Confidence            3445444 589999998 9999999998874 466655 466531  111111          11101123566789988


Q ss_pred             HHhccccCCCccEEEEcCCchhHHHHHHHHHH---cCCCeEEeCCCCCHHH---HHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057           97 VLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLET---VSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus        97 ~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~---~g~~vVigTTG~~~e~---~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      ++      .++|+||-+.++....+.+.....   .+..+|.-+.|+..+.   .+.+.+..-...+.++..|||.--+
T Consensus        96 a~------~~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev  168 (356)
T 3k96_A           96 SL------EGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEV  168 (356)
T ss_dssp             HH------TTCCEEEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHH
T ss_pred             HH------hcCCEEEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHH
Confidence            87      479999977777766666655433   4556676667876542   1223333322446778899987644

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=97.85  E-value=2.9e-05  Score=73.29  Aligned_cols=99  Identities=25%  Similarity=0.268  Sum_probs=65.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhh--c--CC-CCCCeeecC--CH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVC--D--ME-QPLEIPVMS--DL   94 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~~~~~--g--~~-~~~gv~v~~--dl   94 (303)
                      |+||+|+|+ |++|+.+.+.+.++|+++++++-|..             ..|+-.++..  +  +. ....++++.  |+
T Consensus         1 mikVgI~G~-G~iGr~l~R~l~~~~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp   79 (334)
T 3cmc_O            1 AVKVGINGF-GRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDP   79 (334)
T ss_dssp             CEEEEEESC-SHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             CeEEEEECC-CHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCCh
Confidence            689999999 99999999999999999999988741             1111000000  0  00 001234442  44


Q ss_pred             HHHH-hccccCCCccEEEEcCCchhHHHHHHHHHHcCCC-eEEeCC
Q 022057           95 TMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (303)
Q Consensus        95 ~~~l-~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~-vVigTT  138 (303)
                      +++- .    +.++|+|+++|......+.+...++.|.. +||--+
T Consensus        80 ~~i~w~----~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVId~p  121 (334)
T 3cmc_O           80 ENLAWG----EIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAP  121 (334)
T ss_dssp             GGCCTG----GGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             hhcCcc----cCccCEEEECCCchhhHHHHHHHHHCCCCEEEEeCC
Confidence            4431 1    12689999999888889999999999973 555433

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.84  E-value=5.5e-05  Score=69.48  Aligned_cols=115  Identities=12%  Similarity=0.091  Sum_probs=72.7

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCCHHHHHhccccCCCccEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      +++||+|+|+ |.||+.++..+.+ .+++++ ++|++.  ..+..+.    +.|... ++|+++++      .++|+||-
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~e~~------~~aDvvi~   70 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLR-AGLSTW-GADLNP--QACANLL----AEGACGAAASAREFA------GVVDALVI   70 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----HTTCSEEESSSTTTT------TTCSEEEE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHH-CCCeEE-EEECCH--HHHHHHH----HcCCccccCCHHHHH------hcCCEEEE
Confidence            4579999998 9999999998875 578766 467642  2222222    234555 77888887      47899997


Q ss_pred             cCCch-hHHHHH---H---HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCC
Q 022057          113 FTDAS-TVYDNV---K---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (303)
Q Consensus       113 fT~p~-a~~~~~---~---~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N  164 (303)
                      +.++. .+.+.+   .   ..++.|.-+| -++..++...+++.+..++.++..+-.|-
T Consensus        71 ~vp~~~~~~~v~~~~~~l~~~l~~g~ivv-~~st~~~~~~~~~~~~~~~~g~~~~~~pv  128 (303)
T 3g0o_A           71 LVVNAAQVRQVLFGEDGVAHLMKPGSAVM-VSSTISSADAQEIAAALTALNLNMLDAPV  128 (303)
T ss_dssp             CCSSHHHHHHHHC--CCCGGGSCTTCEEE-ECSCCCHHHHHHHHHHHHTTTCEEEECCE
T ss_pred             ECCCHHHHHHHHhChhhHHhhCCCCCEEE-ecCCCCHHHHHHHHHHHHHcCCeEEeCCC
Confidence            77654 344433   1   2233444444 44455566667777777766776655553

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=97.83  E-value=0.00025  Score=57.21  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=31.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      +.|++|+|+ |.+|+.+++.+.+.++++++|++|.+
T Consensus         4 ~~~vlIiGa-G~~g~~l~~~l~~~~g~~vvg~~d~~   38 (141)
T 3nkl_A            4 KKKVLIYGA-GSAGLQLANMLRQGKEFHPIAFIDDD   38 (141)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHSSSEEEEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCcEEEEEEECC
Confidence            468999998 99999999999988899999999864

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.82  E-value=9.7e-05  Score=66.99  Aligned_cols=112  Identities=12%  Similarity=0.146  Sum_probs=68.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCe--eecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |+||+|+|+ |.||+.++..+.+.. +.+++ ++|++.  .....+.    +.|+  ..+.|+++++      .++|+||
T Consensus         6 ~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~-~~d~~~--~~~~~~~----~~g~~~~~~~~~~~~~------~~aDvVi   71 (290)
T 3b1f_A            6 EKTIYIAGL-GLIGASLALGIKRDHPHYKIV-GYNRSD--RSRDIAL----ERGIVDEATADFKVFA------ALADVII   71 (290)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEE-EECSSH--HHHHHHH----HTTSCSEEESCTTTTG------GGCSEEE
T ss_pred             cceEEEEee-CHHHHHHHHHHHhCCCCcEEE-EEcCCH--HHHHHHH----HcCCcccccCCHHHhh------cCCCEEE
Confidence            579999997 999999999887653 67765 466542  1122221    2333  3466777776      3799999


Q ss_pred             EcCCchhHHHHHHHHHHc--C-CCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057          112 DFTDASTVYDNVKQATAF--G-MRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~--g-~~vVigTTG~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      -+.+|....+.+......  + -.+|+-.++......+.+.++..+.++.++
T Consensus        72 lavp~~~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v  123 (290)
T 3b1f_A           72 LAVPIKKTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFV  123 (290)
T ss_dssp             ECSCHHHHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEE
T ss_pred             EcCCHHHHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEE
Confidence            899888887777766544  1 235553334433333556655443234443

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=97.81  E-value=0.00013  Score=69.76  Aligned_cols=94  Identities=15%  Similarity=0.015  Sum_probs=66.8

Q ss_pred             eeEEEEcCCcHHHHHHHH-HHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVI-AVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~-~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      |||+|+|+||-.|+.+++ .+.++|  ..+++.+..+. .|+...++.|.  ...+.-..+.++ +      .++|+|+.
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~~~~~~~~~~-~------~~~Dvvf~   70 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKD--AGMLHDAFDIES-L------KQLDAVIT   70 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSC--CCBCEETTCHHH-H------TTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCC--ceEEEecCChhH-h------ccCCEEEE
Confidence            689999999999999999 888888  68888775544 56655444321  111221223444 3      47999998


Q ss_pred             cCCchhHHHHHHHHHHcCC-CeEEeCCC
Q 022057          113 FTDASTVYDNVKQATAFGM-RSVVYVPH  139 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~-~vVigTTG  139 (303)
                      ++......+.+..+++.|. .+||-.++
T Consensus        71 a~~~~~s~~~~~~~~~~G~k~~VID~ss   98 (370)
T 3pzr_A           71 CQGGSYTEKVYPALRQAGWKGYWIDAAS   98 (370)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CCChHHHHHHHHHHHHCCCCEEEEeCCc
Confidence            8877788999999999997 36666554

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.80  E-value=0.00016  Score=66.89  Aligned_cols=113  Identities=15%  Similarity=0.141  Sum_probs=79.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      |.||+++|. |+||..+++.+.+ .++++. ++|++.  ..+..+.    +.|....+++.++.      ..+|+||-+-
T Consensus         3 M~kIgfIGl-G~MG~~mA~~L~~-~G~~v~-v~dr~~--~~~~~l~----~~Ga~~a~s~~e~~------~~~dvv~~~l   67 (300)
T 3obb_A            3 MKQIAFIGL-GHMGAPMATNLLK-AGYLLN-VFDLVQ--SAVDGLV----AAGASAARSARDAV------QGADVVISML   67 (300)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHH-TTCEEE-EECSSH--HHHHHHH----HTTCEECSSHHHHH------TTCSEEEECC
T ss_pred             cCEEEEeee-hHHHHHHHHHHHh-CCCeEE-EEcCCH--HHHHHHH----HcCCEEcCCHHHHH------hcCCceeecC
Confidence            469999997 9999999999885 678876 578652  2233333    45778888999998      4799888643


Q ss_pred             -CchhHHHHHHH---HH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057          115 -DASTVYDNVKQ---AT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus       115 -~p~a~~~~~~~---al---~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                       .++++.+.+..   .+   +.| .+||-++..+++...++.+.+++.|+..+=+|
T Consensus        68 ~~~~~v~~V~~~~~g~~~~~~~g-~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaP  122 (300)
T 3obb_A           68 PASQHVEGLYLDDDGLLAHIAPG-TLVLECSTIAPTSARKIHAAARERGLAMLDAP  122 (300)
T ss_dssp             SCHHHHHHHHHSSSSSTTSCCC--CEEEECSCCCHHHHHHHHHHHHTTTCEEEECC
T ss_pred             CchHHHHHHHhchhhhhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCEEEecC
Confidence             45555555432   11   223 35666666677888899999999898877655

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=97.80  E-value=0.00013  Score=69.86  Aligned_cols=96  Identities=14%  Similarity=0.063  Sum_probs=68.0

Q ss_pred             CceeEEEEcCCcHHHHHHHH-HHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEE
Q 022057           34 SNIKVIINGAVKEIGRAAVI-AVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~-~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (303)
                      .++||+|+|+||-.|+.+++ .+.++|  ..+++.+..+ ..|+...++.|.  ...+.-..+.++ +      .++|+|
T Consensus         3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~aG~~~~~~~~~--~~~v~~~~~~~~-~------~~vDvv   72 (377)
T 3uw3_A            3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-NAGGKAPSFAKN--ETTLKDATSIDD-L------KKCDVI   72 (377)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-CTTSBCCTTCCS--CCBCEETTCHHH-H------HTCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-hcCCCHHHcCCC--ceEEEeCCChhH-h------cCCCEE
Confidence            35899999999999999999 888887  6888877554 556655444321  112221224444 3      379999


Q ss_pred             EEcCCchhHHHHHHHHHHcCC-CeEEeCCC
Q 022057          111 IDFTDASTVYDNVKQATAFGM-RSVVYVPH  139 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~-~vVigTTG  139 (303)
                      +.++......+.+..+++.|+ .+||-.++
T Consensus        73 f~a~~~~~s~~~~~~~~~~G~k~~VID~ss  102 (377)
T 3uw3_A           73 ITCQGGDYTNDVFPKLRAAGWNGYWIDAAS  102 (377)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             EECCChHHHHHHHHHHHHCCCCEEEEeCCc
Confidence            988877788999999999997 36666554

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=97.79  E-value=2.2e-05  Score=74.21  Aligned_cols=101  Identities=27%  Similarity=0.219  Sum_probs=62.4

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhh--cCC---CCCCeeecC--C
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVC--DME---QPLEIPVMS--D   93 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~~~~~--g~~---~~~gv~v~~--d   93 (303)
                      |++||+|+|+ |++||.+.+++.+++++++|++-|..             ..|+--++..  +..   ....+.++.  |
T Consensus         1 m~ikV~InGf-GrIGr~v~r~l~~~~~~evvaInd~~~~~~~a~ll~yDs~hG~~~~~v~~~~~~l~v~Gk~i~v~~~~d   79 (342)
T 2ep7_A            1 MAIKVGINGF-GRIGRSFFRASWGREEIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVDGKEIKVFAQKD   79 (342)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHTTCTTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             CceEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHhhhhhcccccccCCCcEEEcCCEEEECCEEEEEEEcCC
Confidence            5689999998 99999999999888999999997741             0111000000  000   001133442  3


Q ss_pred             HHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCC-eEEeCC
Q 022057           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (303)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~-vVigTT  138 (303)
                      ++++--   .+.++|+|+++|......+.+..+++.|.. ||+..+
T Consensus        80 p~~~~w---~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvisap  122 (342)
T 2ep7_A           80 PSQIPW---GDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAP  122 (342)
T ss_dssp             GGGCCH---HHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEESSC
T ss_pred             hhhCCc---cccCCCEEEECCCchhhhhhhHHHHhcCCCEEEecCC
Confidence            333210   002689999988888888999999999965 455433

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.77  E-value=0.0002  Score=70.00  Aligned_cols=126  Identities=11%  Similarity=0.097  Sum_probs=73.5

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCC---------------CCCCeeecCCHHHH
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DME---------------QPLEIPVMSDLTMV   97 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~~---------------~~~gv~v~~dl~~~   97 (303)
                      |+|||+|+|+ |.||..++..+.+ .+++++ ++|++.  ..+..+. |..               ....+..++|++++
T Consensus         1 M~mkI~VIG~-G~vG~~lA~~La~-~G~~V~-~~D~~~--~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea   75 (450)
T 3gg2_A            1 MSLDIAVVGI-GYVGLVSATCFAE-LGANVR-CIDTDR--NKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQA   75 (450)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHH
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHh-cCCEEE-EEECCH--HHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHH
Confidence            4589999998 9999999998875 578887 467531  1111111 000               02235677899988


Q ss_pred             HhccccCCCccEEEEcCCch----------hHHHHHHHH---HHcCCCeEEeCC---CCCHHHHHHHHHHhhh----cCC
Q 022057           98 LGSISQSKARAVVIDFTDAS----------TVYDNVKQA---TAFGMRSVVYVP---HIQLETVSALSAFCDK----ASM  157 (303)
Q Consensus        98 l~~~~~~~~~DVvIDfT~p~----------a~~~~~~~a---l~~g~~vVigTT---G~~~e~~~~L~~~a~~----~~i  157 (303)
                      ++      ++|++|-+.++.          .+.+.++..   ++.|.-+|..+|   |.+++-.+.+.+....    ...
T Consensus        76 ~~------~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~  149 (450)
T 3gg2_A           76 VP------EADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDF  149 (450)
T ss_dssp             GG------GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCE
T ss_pred             Hh------cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcce
Confidence            74      799999776333          444444433   445666666655   2222222223332111    237


Q ss_pred             eEEEcCCCcHHHH
Q 022057          158 GCLIAPTLSIGSI  170 (303)
Q Consensus       158 ~vv~a~N~SiGv~  170 (303)
                      +++.+|.|.--..
T Consensus       150 ~v~~~Pe~a~eG~  162 (450)
T 3gg2_A          150 DIASNPEFLKEGN  162 (450)
T ss_dssp             EEEECCCCCCTTS
T ss_pred             eEEechhhhcccc
Confidence            8899999875543

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.77  E-value=0.00018  Score=62.87  Aligned_cols=97  Identities=14%  Similarity=0.079  Sum_probs=59.2

Q ss_pred             CCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEE
Q 022057           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        31 ~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (303)
                      |+.+++||+|+|+ |+||+.+++.+.+ .++++. ++|++.  ..+..+.    +.++.+. ++++++      .++|+|
T Consensus        24 ~~~~~~~I~iiG~-G~~G~~la~~l~~-~g~~V~-~~~r~~--~~~~~~~----~~g~~~~-~~~~~~------~~~DvV   87 (215)
T 2vns_A           24 VPDEAPKVGILGS-GDFARSLATRLVG-SGFKVV-VGSRNP--KRTARLF----PSAAQVT-FQEEAV------SSPEVI   87 (215)
T ss_dssp             -----CCEEEECC-SHHHHHHHHHHHH-TTCCEE-EEESSH--HHHHHHS----BTTSEEE-EHHHHT------TSCSEE
T ss_pred             CCCCCCEEEEEcc-CHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HcCCcee-cHHHHH------hCCCEE
Confidence            3334679999997 9999999998875 466765 466542  1222222    2255554 777776      479999


Q ss_pred             EEcCCchhHHHHH--HHHHHcCCCeEEeCCCCCHHH
Q 022057          111 IDFTDASTVYDNV--KQATAFGMRSVVYVPHIQLET  144 (303)
Q Consensus       111 IDfT~p~a~~~~~--~~al~~g~~vVigTTG~~~e~  144 (303)
                      |.++.+....+.+  ...+ .+..+|.-++|.+.+.
T Consensus        88 i~av~~~~~~~v~~l~~~~-~~~~vv~~s~g~~~~~  122 (215)
T 2vns_A           88 FVAVFREHYSSLCSLSDQL-AGKILVDVSNPTEQEH  122 (215)
T ss_dssp             EECSCGGGSGGGGGGHHHH-TTCEEEECCCCCHHHH
T ss_pred             EECCChHHHHHHHHHHHhc-CCCEEEEeCCCccccc
Confidence            9888775443332  2233 5666666666876543

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.75  E-value=5.9e-05  Score=70.89  Aligned_cols=123  Identities=15%  Similarity=0.232  Sum_probs=74.5

Q ss_pred             Cce-eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh----------cCCCCCCeeecCCHHHHHhccc
Q 022057           34 SNI-KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----------DMEQPLEIPVMSDLTMVLGSIS  102 (303)
Q Consensus        34 ~~i-kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~----------g~~~~~gv~v~~dl~~~l~~~~  102 (303)
                      |+| ||+|+|+ |.||..++..+.+ .++++. ++|++.  ..+..+.          +..-..++.+++|+++++    
T Consensus        13 m~M~kI~iIG~-G~mG~~la~~L~~-~G~~V~-~~~r~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   83 (366)
T 1evy_A           13 LYLNKAVVFGS-GAFGTALAMVLSK-KCREVC-VWHMNE--EEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAY----   83 (366)
T ss_dssp             CCEEEEEEECC-SHHHHHHHHHHTT-TEEEEE-EECSCH--HHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHH----
T ss_pred             hccCeEEEECC-CHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHHHcCcccccccccccccceeeeCCHHHHH----
Confidence            434 9999998 9999999998874 567765 466531  1111111          000012456678888877    


Q ss_pred             cCCCccEEEEcCCchhHHHHHHH-------HHHc-CCCeEEeCCCCCHHHHHHHHHHhhhc-C---CeEEEcCCCcH
Q 022057          103 QSKARAVVIDFTDASTVYDNVKQ-------ATAF-GMRSVVYVPHIQLETVSALSAFCDKA-S---MGCLIAPTLSI  167 (303)
Q Consensus       103 ~~~~~DVvIDfT~p~a~~~~~~~-------al~~-g~~vVigTTG~~~e~~~~L~~~a~~~-~---i~vv~a~N~Si  167 (303)
                        .++|+||-+..+..+.+.+..       .+.. +..+|.-+.|++.+..+.+.+..++. +   ..++..||++-
T Consensus        84 --~~aDvVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~  158 (366)
T 1evy_A           84 --NGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAI  158 (366)
T ss_dssp             --TTCSSEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHH
T ss_pred             --cCCCEEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHH
Confidence              479999988877666555544       3445 77777666577654322233332221 2   46788899864

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.74  E-value=7.6e-05  Score=64.37  Aligned_cols=120  Identities=11%  Similarity=0.070  Sum_probs=71.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---cC-CCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DM-EQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---g~-~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |||+|+|++|.||+.+++.+.+ .+++++. +|++.  .....+.   +. .....+. ..+++++++      ++|+||
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~-~g~~V~~-~~r~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~D~Vi   69 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLAT-LGHEIVV-GSRRE--EKAEAKAAEYRRIAGDASIT-GMKNEDAAE------ACDIAV   69 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEE-EESSH--HHHHHHHHHHHHHHSSCCEE-EEEHHHHHH------HCSEEE
T ss_pred             CeEEEEcCCCHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHHHHhccccccCCCC-hhhHHHHHh------cCCEEE
Confidence            5899999559999999998875 5678664 56532  1111111   10 0001233 357777774      689999


Q ss_pred             EcCCchhHHHHHHHHHH--cCCCeEEeCCCCCH-----------HHHHHHHHHhhhcCCeEEEc-CCCcHH
Q 022057          112 DFTDASTVYDNVKQATA--FGMRSVVYVPHIQL-----------ETVSALSAFCDKASMGCLIA-PTLSIG  168 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~--~g~~vVigTTG~~~-----------e~~~~L~~~a~~~~i~vv~a-~N~SiG  168 (303)
                      .++.+..+.+.+....+  .+..+|.-++|++.           ...++|.+...  +..++.+ +|.+..
T Consensus        70 ~~~~~~~~~~~~~~l~~~~~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~v~~~~~~~~~  138 (212)
T 1jay_A           70 LTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE--SEKVVSALHTIPAA  138 (212)
T ss_dssp             ECSCHHHHHHHHHHTHHHHTTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT--CSCEEECCTTCCHH
T ss_pred             EeCChhhHHHHHHHHHHHcCCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC--CCeEEEEccchHHH
Confidence            99988777666543322  36666666667762           12345555443  2566665 344433

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.74  E-value=0.00011  Score=68.22  Aligned_cols=98  Identities=11%  Similarity=0.064  Sum_probs=65.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC----cEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG----MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~----~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (303)
                      +|||+|+|+ |.||..++..+.+. +    .++. ++|++.....+..+.    +.|+.+..+..+++.      ++|+|
T Consensus        22 ~mkI~iIG~-G~mG~ala~~L~~~-G~~~~~~V~-v~~r~~~~~~~~~l~----~~G~~~~~~~~e~~~------~aDvV   88 (322)
T 2izz_A           22 SMSVGFIGA-GQLAFALAKGFTAA-GVLAAHKIM-ASSPDMDLATVSALR----KMGVKLTPHNKETVQ------HSDVL   88 (322)
T ss_dssp             CCCEEEESC-SHHHHHHHHHHHHT-TSSCGGGEE-EECSCTTSHHHHHHH----HHTCEEESCHHHHHH------HCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCCCcceEE-EECCCccHHHHHHHH----HcCCEEeCChHHHhc------cCCEE
Confidence            479999998 99999999988754 4    5554 566643101222222    346777778888774      68999


Q ss_pred             EEcCCchhHHHHHHHHHHc---CCCeEEeCCCCCHHHH
Q 022057          111 IDFTDASTVYDNVKQATAF---GMRSVVYVPHIQLETV  145 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~---g~~vVigTTG~~~e~~  145 (303)
                      |-+..|..+.+.+......   +.-+|.-++|++.+.+
T Consensus        89 ilav~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l  126 (322)
T 2izz_A           89 FLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSI  126 (322)
T ss_dssp             EECSCGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHH
T ss_pred             EEEeCHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHH
Confidence            9999888888877655432   3434444458876543

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.74  E-value=9.5e-05  Score=65.84  Aligned_cols=92  Identities=10%  Similarity=0.074  Sum_probs=64.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~---~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      +|||+|+|+ |.||+.++..+.+...   .++ .++|++..            ..|+.++.+++++++      ++|+||
T Consensus         4 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v-~~~~~~~~------------~~g~~~~~~~~~~~~------~~D~vi   63 (262)
T 2rcy_A            4 NIKLGFMGL-GQMGSALAHGIANANIIKKENL-FYYGPSKK------------NTTLNYMSSNEELAR------HCDIIV   63 (262)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHHTSSCGGGE-EEECSSCC------------SSSSEECSCHHHHHH------HCSEEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCCCCCCeE-EEEeCCcc------------cCceEEeCCHHHHHh------cCCEEE
Confidence            479999998 9999999998875431   444 45676421            135667778888774      699999


Q ss_pred             EcCCchhHHHHHHHHHHc--CCCeEEeCCCCCHHHHH
Q 022057          112 DFTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVS  146 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~--g~~vVigTTG~~~e~~~  146 (303)
                      -+..|..+.+.+......  +..+|+-+.|.+.+.++
T Consensus        64 ~~v~~~~~~~v~~~l~~~l~~~~vv~~~~gi~~~~l~  100 (262)
T 2rcy_A           64 CAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLE  100 (262)
T ss_dssp             ECSCTTTHHHHHHHSGGGCTTCEEEECCSSCCHHHHH
T ss_pred             EEeCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHH
Confidence            998888877777654432  44466666688876433

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.73  E-value=2.4e-05  Score=72.87  Aligned_cols=123  Identities=12%  Similarity=0.189  Sum_probs=73.6

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC-----CCCCeeecCCHHHHHhccccCC
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME-----QPLEIPVMSDLTMVLGSISQSK  105 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~-----~~~gv~v~~dl~~~l~~~~~~~  105 (303)
                      .|++||+|+|+ |.||..++..+.+ .+.++. +++++.  ..+..+.  |..     ...++.+++|+++ +      .
T Consensus        12 ~~~~kI~iIG~-G~mG~ala~~L~~-~G~~V~-~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~------~   79 (335)
T 1z82_A           12 HMEMRFFVLGA-GSWGTVFAQMLHE-NGEEVI-LWARRK--EIVDLINVSHTSPYVEESKITVRATNDLEE-I------K   79 (335)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSSH--HHHHHHHHHSCBTTBTTCCCCSEEESCGGG-C------C
T ss_pred             ccCCcEEEECc-CHHHHHHHHHHHh-CCCeEE-EEeCCH--HHHHHHHHhCCcccCCCCeeeEEEeCCHHH-h------c
Confidence            46799999998 9999999998874 467765 466531  1112121  100     0113566778877 5      4


Q ss_pred             CccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhh---cCCeEEEcCCCcH
Q 022057          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK---ASMGCLIAPTLSI  167 (303)
Q Consensus       106 ~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~---~~i~vv~a~N~Si  167 (303)
                      ++|+||-+..+..+.+.+......+..+|.-+.|++.++.+.+.+...+   ...+++..||+..
T Consensus        80 ~aDvVil~vk~~~~~~v~~~l~~~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~  144 (335)
T 1z82_A           80 KEDILVIAIPVQYIREHLLRLPVKPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAE  144 (335)
T ss_dssp             TTEEEEECSCGGGHHHHHTTCSSCCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHH
T ss_pred             CCCEEEEECCHHHHHHHHHHhCcCCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHH
Confidence            7999998888777777665432245556655557664332223332221   2357788899864

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.69  E-value=0.00031  Score=69.04  Aligned_cols=122  Identities=9%  Similarity=0.048  Sum_probs=75.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      +||+|+|+ |.||+.++..+.+ .++++ .++|++.  ..+..+.. .....++..+.|++++++++   .++|+||-+.
T Consensus         3 m~IgvIG~-G~mG~~lA~~La~-~G~~V-~v~dr~~--~~~~~l~~~~~~g~gi~~~~~~~e~v~~l---~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIGL-AVMGQNLILNMND-HGFVV-CAFNRTV--SKVDDFLANEAKGTKVLGAHSLEEMVSKL---KKPRRIILLV   74 (482)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHH-TTCCE-EEECSST--HHHHHHHHTTTTTSSCEECSSHHHHHHHB---CSSCEEEECS
T ss_pred             CeEEEECh-HHHHHHHHHHHHH-CCCeE-EEEeCCH--HHHHHHHhccccCCCeEEeCCHHHHHhhc---cCCCEEEEeC
Confidence            68999997 9999999998875 56775 4677642  22222221 00004577788999987421   3799999877


Q ss_pred             Cch-hHHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057          115 DAS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus       115 ~p~-a~~~~~~~a---l~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                      ++. .+.+.+...   ++.|..+|..++|... +..++.+..++.++.++-.|++.
T Consensus        75 p~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~-~~~~l~~~l~~~g~~~v~~pv~g  129 (482)
T 2pgd_A           75 KAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYR-DTMRRCRDLKDKGILFVGSGVSG  129 (482)
T ss_dssp             CTTHHHHHHHHHHHHHCCTTCEEEECSCCCHH-HHHHHHHHHHHTTCEEEEEEEES
T ss_pred             CChHHHHHHHHHHHhhcCCCCEEEECCCCCHH-HHHHHHHHHHHcCCeEeCCCCCC
Confidence            664 555555433   3456656656667643 33455555555567766566543

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=97.69  E-value=9.1e-05  Score=70.12  Aligned_cols=91  Identities=14%  Similarity=0.110  Sum_probs=67.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHH-HHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVvID  112 (303)
                      +||+|+|++|-.|+.+++.+.++  |..+|+.+...+..|+... +.|    ....+. +++ +.+      .++|+|+.
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~-~~~----~~~~~~-~~~~~~~------~~~Dvvf~   69 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLA-FRG----QEIEVE-DAETADP------SGLDIALF   69 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEE-ETT----EEEEEE-ETTTSCC------TTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCcee-ecC----CceEEE-eCCHHHh------ccCCEEEE
Confidence            79999999999999999998887  8889998776655566544 221    122221 111 122      47899998


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTT  138 (303)
                      ++......+.+..+++.|+.+|.-+.
T Consensus        70 a~~~~~s~~~a~~~~~~G~~vID~Sa   95 (344)
T 3tz6_A           70 SAGSAMSKVQAPRFAAAGVTVIDNSS   95 (344)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             CCChHHHHHHHHHHHhCCCEEEECCC
Confidence            88888889999999999998776554

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=97.65  E-value=9.8e-05  Score=69.57  Aligned_cols=97  Identities=21%  Similarity=0.198  Sum_probs=63.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhh--c--CC-CCCCeeecC--C
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVC--D--ME-QPLEIPVMS--D   93 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~~~~~--g--~~-~~~gv~v~~--d   93 (303)
                      +||+|+|+ |++|+.+++.+.++  |++||+++-|..             ..|+-.+++.  +  +. ....++++.  |
T Consensus         1 ~kVgI~G~-G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d   79 (332)
T 1hdg_O            1 ARVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD   79 (332)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCC
Confidence            58999999 99999999999988  999999988731             1121101000  0  00 001234442  4


Q ss_pred             HHHH-HhccccCCCccEEEEcCCchhHHHHHHHHHHcCCC-eEEeC
Q 022057           94 LTMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYV  137 (303)
Q Consensus        94 l~~~-l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~-vVigT  137 (303)
                      ++++ ..+    .++|+|+++|......+.+...++.|.. +||--
T Consensus        80 p~~l~w~~----~~vDvV~~atg~~~s~e~a~~~l~aGakkvVId~  121 (332)
T 1hdg_O           80 PSKLPWKD----LGVDFVIESTGVFRNREKAELHLQAGAKKVIITA  121 (332)
T ss_dssp             GGGSCHHH----HTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESS
T ss_pred             hHHCcccc----cCCCEEEECCccchhHHHHHHHHHcCCcEEEEeC
Confidence            4443 110    2689999999888889999999999973 55433

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.61  E-value=0.00034  Score=64.96  Aligned_cols=103  Identities=16%  Similarity=0.131  Sum_probs=65.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCe--eecCCHHH-HHhccccCCCccE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTM-VLGSISQSKARAV  109 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~-~l~~~~~~~~~DV  109 (303)
                      ++||+|+|+ |.||+.+++.+.+ .++  +++ ++|++.  .......    +.|+  ..++++++ ++      .++|+
T Consensus        33 ~~kI~IIG~-G~mG~slA~~l~~-~G~~~~V~-~~dr~~--~~~~~a~----~~G~~~~~~~~~~~~~~------~~aDv   97 (314)
T 3ggo_A           33 MQNVLIVGV-GFMGGSFAKSLRR-SGFKGKIY-GYDINP--ESISKAV----DLGIIDEGTTSIAKVED------FSPDF   97 (314)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHH-TTCCSEEE-EECSCH--HHHHHHH----HTTSCSEEESCTTGGGG------GCCSE
T ss_pred             CCEEEEEee-CHHHHHHHHHHHh-CCCCCEEE-EEECCH--HHHHHHH----HCCCcchhcCCHHHHhh------ccCCE
Confidence            479999997 9999999998875 455  665 467642  1122221    2343  45677887 66      47999


Q ss_pred             EEEcCCchhHHHHHHHHHHc-C-CCeEEeCCCCCHHHHHHHHHHh
Q 022057          110 VIDFTDASTVYDNVKQATAF-G-MRSVVYVPHIQLETVSALSAFC  152 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~-g-~~vVigTTG~~~e~~~~L~~~a  152 (303)
                      ||.+.++....+.+...... + -.+|+-.++......+.+.+..
T Consensus        98 Vilavp~~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l  142 (314)
T 3ggo_A           98 VMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL  142 (314)
T ss_dssp             EEECSCGGGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhc
Confidence            99999888877777655542 2 2355544444433445555543

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.60  E-value=0.00032  Score=68.80  Aligned_cols=122  Identities=12%  Similarity=0.096  Sum_probs=76.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ++||+|+|+ |.||+.++..+.+ .++++ .++|++.  ..+..+.......++..+.|++++++.+   .++|+||-+.
T Consensus         5 ~~~IgvIG~-G~mG~~lA~~L~~-~G~~V-~v~dr~~--~~~~~l~~~~~~~gi~~~~s~~e~v~~l---~~aDvVilav   76 (474)
T 2iz1_A            5 QANFGVVGM-AVMGKNLALNVES-RGYTV-AIYNRTT--SKTEEVFKEHQDKNLVFTKTLEEFVGSL---EKPRRIMLMV   76 (474)
T ss_dssp             TBSEEEECC-SHHHHHHHHHHHH-TTCCE-EEECSSH--HHHHHHHHHTTTSCEEECSSHHHHHHTB---CSSCEEEECC
T ss_pred             CCcEEEEee-HHHHHHHHHHHHh-CCCEE-EEEcCCH--HHHHHHHHhCcCCCeEEeCCHHHHHhhc---cCCCEEEEEc
Confidence            479999998 9999999999885 46765 4677642  1222222100012677788999987521   2499999887


Q ss_pred             Cch-hHHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057          115 DAS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       115 ~p~-a~~~~~~~a---l~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      ++. .+.+.+...   ++.|..+|..++|.. ....++.+..++.++.++-+|++
T Consensus        77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~-~~~~~l~~~l~~~g~~~v~~pv~  130 (474)
T 2iz1_A           77 QAGAATDATIKSLLPLLDIGDILIDGGNTHF-PDTMRRNAELADSGINFIGTGVS  130 (474)
T ss_dssp             CTTHHHHHHHHHHGGGCCTTCEEEECSCCCH-HHHHHHHHHTTTSSCEEEEEEEC
T ss_pred             cCchHHHHHHHHHHhhCCCCCEEEECCCCCH-HHHHHHHHHHHHCCCeEECCCCC
Confidence            763 555555433   345665665556653 34455666666667766655654

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.60  E-value=0.00038  Score=62.68  Aligned_cols=102  Identities=17%  Similarity=0.152  Sum_probs=62.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCee--ecCCHHHHHhccccCC-CccE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSK-ARAV  109 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~~~~~g~~~~~gv~--v~~dl~~~l~~~~~~~-~~DV  109 (303)
                      |+||+|+|+ |.||+.++..+.+ .++  +++ ++|++.  .....+.    +.|+.  .++|+++++      . ++|+
T Consensus         1 m~~I~iIG~-G~mG~~~a~~l~~-~g~~~~V~-~~d~~~--~~~~~~~----~~g~~~~~~~~~~~~~------~~~aDv   65 (281)
T 2g5c_A            1 MQNVLIVGV-GFMGGSFAKSLRR-SGFKGKIY-GYDINP--ESISKAV----DLGIIDEGTTSIAKVE------DFSPDF   65 (281)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHH-TTCCSEEE-EECSCH--HHHHHHH----HTTSCSEEESCGGGGG------GTCCSE
T ss_pred             CcEEEEEec-CHHHHHHHHHHHh-cCCCcEEE-EEeCCH--HHHHHHH----HCCCcccccCCHHHHh------cCCCCE
Confidence            469999997 9999999998875 355  655 467542  1111111    23332  356777776      4 7999


Q ss_pred             EEEcCCchhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHh
Q 022057          110 VIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFC  152 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~---~g~~vVigTTG~~~e~~~~L~~~a  152 (303)
                      ||.+++|....+.+.....   .+. +|+-+++......+.+.+..
T Consensus        66 Vilavp~~~~~~v~~~l~~~l~~~~-iv~~~~~~~~~~~~~l~~~l  110 (281)
T 2g5c_A           66 VMLSSPVRTFREIAKKLSYILSEDA-TVTDQGSVKGKLVYDLENIL  110 (281)
T ss_dssp             EEECSCHHHHHHHHHHHHHHSCTTC-EEEECCSCCTHHHHHHHHHH
T ss_pred             EEEcCCHHHHHHHHHHHHhhCCCCc-EEEECCCCcHHHHHHHHHhc
Confidence            9999988887777665433   343 44433333333334455543

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=97.57  E-value=0.00014  Score=68.63  Aligned_cols=98  Identities=21%  Similarity=0.187  Sum_probs=62.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc---CCcEEEEEEecC-------------CCCcchhhh--hcCC---CCCCeeecC-
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSH-------------SVGEDIGMV--CDME---QPLEIPVMS-   92 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~---~~~eLvg~vd~~-------------~~g~d~~~~--~g~~---~~~gv~v~~-   92 (303)
                      |+||+|+|+ |++||.+.+++.++   +++|+|++-|..             ..|+--++.  -|..   ....++++. 
T Consensus         1 ~ikVaInGf-GrIGr~v~r~l~~~~~~~~~evvaInd~~~~~~~a~ll~ydS~hg~f~~~v~~~~~~l~v~g~~i~v~~~   79 (335)
T 1obf_O            1 TIRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDAN   79 (335)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECC
T ss_pred             CcEEEEECC-CHHHHHHHHHHHhcCCCCCcEEEEEeCCCCHHHHHHHhccCCcCCCCCCCEEEeCCEEEECCEEEEEEEc
Confidence            479999998 99999999999888   899999998731             001100000  0000   001233432 


Q ss_pred             -CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCC-eEEe
Q 022057           93 -DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVY  136 (303)
Q Consensus        93 -dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~-vVig  136 (303)
                       |++++-=   .+.++|+|+++|......+.+..+++.|.. ||+.
T Consensus        80 ~dp~~~~w---~~~gvDiV~estG~f~s~e~a~~h~~aGakkVviS  122 (335)
T 1obf_O           80 RNPAQLPW---GALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIIS  122 (335)
T ss_dssp             SCGGGSCT---TTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEES
T ss_pred             CCcccCCc---cccCCCEEEEccCccccHHHHHHHHHcCCCEEEEC
Confidence             4444310   013789999988877888888999998875 5553

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.54  E-value=0.00043  Score=68.11  Aligned_cols=122  Identities=9%  Similarity=0.049  Sum_probs=76.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ++||+|+|+ |.||+.++..+.+ .+++++ ++|++.  ..+..+.......++..+.|++++++.+   .++|+||-..
T Consensus        15 ~~~IgvIGl-G~MG~~lA~~La~-~G~~V~-v~~r~~--~~~~~l~~~~~~~gi~~~~s~~e~v~~l---~~aDvVil~V   86 (480)
T 2zyd_A           15 KQQIGVVGM-AVMGRNLALNIES-RGYTVS-IFNRSR--EKTEEVIAENPGKKLVPYYTVKEFVESL---ETPRRILLMV   86 (480)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHT-TTCCEE-EECSSH--HHHHHHHHHSTTSCEEECSSHHHHHHTB---CSSCEEEECS
T ss_pred             CCeEEEEcc-HHHHHHHHHHHHh-CCCeEE-EEeCCH--HHHHHHHhhCCCCCeEEeCCHHHHHhCC---CCCCEEEEEC
Confidence            578999998 9999999999884 577765 567642  2222222100002677788999987511   2499999777


Q ss_pred             Cc-hhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057          115 DA-STVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       115 ~p-~a~~~~~~~al~---~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      ++ ..+.+.+.....   .|.-+|..++|... ...++.+..++.++.++-+|++
T Consensus        87 p~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~-~t~~l~~~l~~~g~~~v~~pv~  140 (480)
T 2zyd_A           87 KAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQ-DTIRRNRELSAEGFNFIGTGVS  140 (480)
T ss_dssp             CSSSHHHHHHHHHGGGCCTTCEEEECSCCCHH-HHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHhhcCCCCEEEECCCCCHH-HHHHHHHHHHHCCCCeeCCccc
Confidence            66 456666655433   35556666667643 3345556555556666655553

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.00072  Score=66.86  Aligned_cols=121  Identities=11%  Similarity=0.039  Sum_probs=75.9

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      |..||+|+|+ |.||+.++..+.+ .+++++ ++|++.  ..+..+.. .....++..+.|++++++.+   .++|+||-
T Consensus         9 ~~~~IgvIGl-G~MG~~lA~~La~-~G~~V~-v~dr~~--~~~~~l~~~~~~~~gi~~~~s~~e~v~~l---~~aDvVil   80 (497)
T 2p4q_A            9 MSADFGLIGL-AVMGQNLILNAAD-HGFTVC-AYNRTQ--SKVDHFLANEAKGKSIIGATSIEDFISKL---KRPRKVML   80 (497)
T ss_dssp             CCCSEEEECC-SHHHHHHHHHHHH-TTCCEE-EECSSS--HHHHHHHHTTTTTSSEECCSSHHHHHHTS---CSSCEEEE
T ss_pred             CCCCEEEEee-HHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHHcccccCCCeEEeCCHHHHHhcC---CCCCEEEE
Confidence            5578999998 9999999999885 577765 577642  22223321 00004677788999987521   24999997


Q ss_pred             cCCc-hhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057          113 FTDA-STVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus       113 fT~p-~a~~~~~~~al~---~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                      ..++ ..+.+.+.....   .|.-+|..+++.. ....++.+..++.++..+-+|
T Consensus        81 ~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~-~~~~~l~~~l~~~g~~~v~~p  134 (497)
T 2p4q_A           81 LVKAGAPVDALINQIVPLLEKGDIIIDGGNSHF-PDSNRRYEELKKKGILFVGSG  134 (497)
T ss_dssp             CCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCH-HHHHHHHHHHHHTTCEEEEEE
T ss_pred             EcCChHHHHHHHHHHHHhCCCCCEEEECCCCCh-hHHHHHHHHHHHcCCceeCCC
Confidence            7766 466666654443   3555565666654 344555565555666655444

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=97.54  E-value=0.00093  Score=65.63  Aligned_cols=76  Identities=13%  Similarity=0.112  Sum_probs=48.5

Q ss_pred             cCCCCCceeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhc-CC--------------CCCCeeecC
Q 022057           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCD-ME--------------QPLEIPVMS   92 (303)
Q Consensus        29 ~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g-~~--------------~~~gv~v~~   92 (303)
                      ..++.|||||+|+|+ |.||..++..+.+. +++++++ +|.+.  ..+..+.. ..              ...++..++
T Consensus         3 ~~~~~~~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~~-~D~~~--~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~   78 (481)
T 2o3j_A            3 DQVFGKVSKVVCVGA-GYVGGPTCAMIAHKCPHITVTV-VDMNT--AKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSS   78 (481)
T ss_dssp             CCSSCCCCEEEEECC-STTHHHHHHHHHHHCTTSEEEE-ECSCH--HHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEES
T ss_pred             CCCCCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEE-EECCH--HHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEEC
Confidence            344455789999998 99999999988865 3788776 66431  11111110 00              012356677


Q ss_pred             CHHHHHhccccCCCccEEEEcC
Q 022057           93 DLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      |+++.+.      ++|++|-+.
T Consensus        79 ~~~~~~~------~aDvvii~V   94 (481)
T 2o3j_A           79 DIPKAIA------EADLIFISV   94 (481)
T ss_dssp             CHHHHHH------HCSEEEECC
T ss_pred             CHHHHhh------cCCEEEEec
Confidence            8877774      689999774

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.51  E-value=0.00046  Score=67.83  Aligned_cols=121  Identities=11%  Similarity=0.055  Sum_probs=72.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---cCC-CCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DME-QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |||+|+|+ |.||+.++..+.+ .++++ .++|++.  ..+..+.   |.. ...++..+.|++++++.+   .++|+||
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~-~G~~V-~v~dr~~--~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l---~~aDvVi   73 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAE-KGFKV-AVFNRTY--SKSEEFMKANASAPFAGNLKAFETMEAFAASL---KKPRKAL   73 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHH-TTCCE-EEECSSH--HHHHHHHHHTTTSTTGGGEEECSCHHHHHHHB---CSSCEEE
T ss_pred             CEEEEECh-HHHHHHHHHHHHH-CCCEE-EEEeCCH--HHHHHHHHhcCCCCCCCCeEEECCHHHHHhcc---cCCCEEE
Confidence            58999997 9999999998875 46775 4677642  1222222   100 001266778999887521   2599999


Q ss_pred             EcCCch-hHHHHHHH---HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057          112 DFTDAS-TVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       112 DfT~p~-a~~~~~~~---al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      -+.++. .+.+.+..   .++.|..+|..++|... ...++.+..++.++..+-+|++
T Consensus        74 laVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~-~~~~l~~~l~~~g~~~v~~pv~  130 (478)
T 1pgj_A           74 ILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFK-DQGRRAQQLEAAGLRFLGMGIS  130 (478)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHH-HHHHHHHHHHTTTCEEEEEEEE
T ss_pred             EecCChHHHHHHHHHHHhhCCCCCEEEECCCCChH-HHHHHHHHHHHCCCeEEEeecc
Confidence            887663 45555543   34456656656666643 3345555555556665545554

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=97.48  E-value=0.0013  Score=63.94  Aligned_cols=117  Identities=15%  Similarity=0.221  Sum_probs=70.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CC-------------CCCCeeecCCHHHHHhc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-ME-------------QPLEIPVMSDLTMVLGS  100 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~-------------~~~gv~v~~dl~~~l~~  100 (303)
                      +|||+|+|+ |.||..++..+.+  ++++++ +|.+.  ..+..+.. ..             ...++..++|+++++  
T Consensus        36 ~mkIaVIGl-G~mG~~lA~~La~--G~~V~~-~D~~~--~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~--  107 (432)
T 3pid_A           36 FMKITISGT-GYVGLSNGVLIAQ--NHEVVA-LDIVQ--AKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAY--  107 (432)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHT--TSEEEE-ECSCH--HHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH--
T ss_pred             CCEEEEECc-CHHHHHHHHHHHc--CCeEEE-EecCH--HHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHH--
Confidence            579999997 9999999998774  888875 67531  11111110 00             012567788998888  


Q ss_pred             cccCCCccEEEEcCCch-----------hHHHHHHHH--HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057          101 ISQSKARAVVIDFTDAS-----------TVYDNVKQA--TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus       101 ~~~~~~~DVvIDfT~p~-----------a~~~~~~~a--l~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                          .++|+||.+.+..           .+.+.++..  ++.|.-+|..+| ..+...+++.+...+  ..++++|-|-
T Consensus       108 ----~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~l~~g~iVV~~ST-v~pgtt~~l~~~l~~--~~v~~sPe~~  179 (432)
T 3pid_A          108 ----RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTEINPNAVMIIKST-IPVGFTRDIKERLGI--DNVIFSPEFL  179 (432)
T ss_dssp             ----TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHHHCTTSEEEECSC-CCTTHHHHHHHHHTC--CCEEECCCCC
T ss_pred             ----hCCCEEEEeCCCccccccccccHHHHHHHHHHHHhcCCCcEEEEeCC-CChHHHHHHHHHHhh--ccEeecCccC
Confidence                4799999876432           233332222  455655555554 333334455555554  3678888873

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=97.47  E-value=8.8e-05  Score=70.15  Aligned_cols=125  Identities=16%  Similarity=0.199  Sum_probs=73.3

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCC-------cEEEEEEecCCC--Cc-chhhhh----------cCCCCCCeeecC
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARG-------MEVAGAIDSHSV--GE-DIGMVC----------DMEQPLEIPVMS   92 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~-------~eLvg~vd~~~~--g~-d~~~~~----------g~~~~~gv~v~~   92 (303)
                      .||+||+|+|+ |.||..++..+.+. +       .++. ++|++..  ++ .+..+.          +..-..++..++
T Consensus        19 ~~~~kI~iIGa-G~mG~alA~~L~~~-G~~~~~~~~~V~-~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~   95 (375)
T 1yj8_A           19 DGPLKISILGS-GNWASAISKVVGTN-AKNNYLFENEVR-MWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHS   95 (375)
T ss_dssp             HSCBCEEEECC-SHHHHHHHHHHHHH-HHHCTTBCSCEE-EECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEES
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHHc-CCccCCCCCeEE-EEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEEC
Confidence            35789999998 99999999988753 3       5554 4665321  00 111111          100012466678


Q ss_pred             CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHH-------cCCCeEEeCCCCCH-----HHHH-HHHHHhhhcCCeE
Q 022057           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA-------FGMRSVVYVPHIQL-----ETVS-ALSAFCDKASMGC  159 (303)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~-------~g~~vVigTTG~~~-----e~~~-~L~~~a~~~~i~v  159 (303)
                      |+++++      .++|+||-+..+..+.+.+.....       .+..+|.-+.|++.     +... .+.+..- ...++
T Consensus        96 ~~~ea~------~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~v  168 (375)
T 1yj8_A           96 DLASVI------NDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLN-IPCSA  168 (375)
T ss_dssp             STHHHH------TTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSS-SCEEE
T ss_pred             CHHHHH------cCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcC-CCEEE
Confidence            888877      479999988877766666655433       24445555557654     1222 2222211 23677


Q ss_pred             EEcCCCcH
Q 022057          160 LIAPTLSI  167 (303)
Q Consensus       160 v~a~N~Si  167 (303)
                      +..||++.
T Consensus       169 ~~gp~~a~  176 (375)
T 1yj8_A          169 LSGANIAM  176 (375)
T ss_dssp             EECSCCHH
T ss_pred             EeCCchHH
Confidence            88899865

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=97.47  E-value=0.00027  Score=66.59  Aligned_cols=154  Identities=20%  Similarity=0.211  Sum_probs=89.7

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhhh--c--C-CCCCCeeec--C
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMVC--D--M-EQPLEIPVM--S   92 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~~~~~--g--~-~~~~gv~v~--~   92 (303)
                      .|++||+|+|+ ||+||.+.+++.+.+++|+|++-|...             .|+--+++.  +  + .....++++  .
T Consensus         2 ~m~~kv~INGf-GrIGr~v~R~~~~~~~~~ivaind~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~   80 (338)
T 3lvf_P            2 SMAVKVAINGF-GRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEP   80 (338)
T ss_dssp             CCCEEEEEECC-SHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCS
T ss_pred             CccEEEEEECC-CcHHHHHHHHHHHCCCceEEEEecCCCHHHHHHHhccCCCCCCcCCeEEEcCCEEEECCEEEEEEEec
Confidence            57899999998 999999999999888999999876210             011000000  0  0 000123443  3


Q ss_pred             CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCC-eEEeCCC----------CCHHHHHHHHHHhhhcCCeEEE
Q 022057           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPH----------IQLETVSALSAFCDKASMGCLI  161 (303)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~-vVigTTG----------~~~e~~~~L~~~a~~~~i~vv~  161 (303)
                      |++++-=   .+.++|+|+++|-.....+.+...++.|.. ||+..+.          .+.+.++      .+  -.++ 
T Consensus        81 dp~~i~w---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~------~~--~~II-  148 (338)
T 3lvf_P           81 DASKLPW---KDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELD------GS--ETVV-  148 (338)
T ss_dssp             CGGGSCT---TTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSCEECCTTTTGGGCC------SC--CSEE-
T ss_pred             ccccCCc---cccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCCCCCCCCEEeccCCHHHcC------cc--CCeE-
Confidence            4444310   014789999988888888899999999964 5554432          2332211      11  3444 


Q ss_pred             cCCCcHHHHHHHHHHHHhccCCCcEE---EEEccC----C-CCCCCcH
Q 022057          162 APTLSIGSILLQQAAISASFHYKNVE---IVESRP----N-ARDFPSP  201 (303)
Q Consensus       162 a~N~SiGv~ll~~~a~~~~~~~~die---IiE~Hh----~-K~DaPSG  201 (303)
                       +|=|=--|-|.-+++.+-+. |.|+   +.-.|.    + -.|.|++
T Consensus       149 -SNasCTTn~Lap~lkvL~d~-fGI~~g~mTTvha~T~~q~~~D~~~~  194 (338)
T 3lvf_P          149 -SGASCTTNSLAPVAKVLNDD-FGLVEGLMTTIHAYTGDQNTQDAPHR  194 (338)
T ss_dssp             -ECCCHHHHHHHHHHHHHHHH-HCEEEEEEEEEEECCTTSCSSSCCCT
T ss_pred             -ecCchhhhhhHHHHHHHHHh-cCEEEEEEeeeccccchhhhhcCCcc
Confidence             55555566565556655432 2332   233363    2 3688987

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}

Probab=97.46  E-value=0.00024  Score=67.10  Aligned_cols=98  Identities=19%  Similarity=0.190  Sum_probs=64.2

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---------cC--------C-----CCCCeee
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---------DM--------E-----QPLEIPV   90 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---------g~--------~-----~~~gv~v   90 (303)
                      ++|+||+|+|+ ||+||.+.+++.+.+++|+|++-|+.    |+..++         |.        +     ....+++
T Consensus         2 ~~~~kv~INGf-GrIGr~v~Ra~~~~~~~~ivaINd~~----d~~~~a~llkyDS~hG~f~~~v~~~~~~l~inGk~I~v   76 (345)
T 4dib_A            2 NAMTRVAINGF-GRIGRMVFRQAIKESAFEIVAINASY----PSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKMIRL   76 (345)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHTTCSSSEEEEEECSS----CHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEE
T ss_pred             CccEEEEEECC-CcHHHHHHHHHHhCCCceEEEEcCCC----CHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEE
Confidence            45899999998 99999999999888899999987741    111100         00        0     0012344


Q ss_pred             c--CCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCC-eEEeCC
Q 022057           91 M--SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (303)
Q Consensus        91 ~--~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~-vVigTT  138 (303)
                      +  .|++++-=   .+.++|+|+++|-.....+.+...++.|.. ||+..|
T Consensus        77 ~~e~dp~~i~w---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISap  124 (345)
T 4dib_A           77 LNNRDPKELPW---TDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAP  124 (345)
T ss_dssp             ECCSCGGGSCT---TTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             eecCChhhCCc---cccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCC
Confidence            3  34444310   014789999988877888888999999964 555444

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.44  E-value=0.00081  Score=60.38  Aligned_cols=99  Identities=13%  Similarity=0.201  Sum_probs=64.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eecCCHHHHHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |||+|+|+ |.||+.+++.+.+ .+++++. +|++.  .....+.    +.++  .++.+++++ .      ++|+||.+
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~-~g~~V~~-~~~~~--~~~~~~~----~~g~~~~~~~~~~~~-~------~~D~vi~a   64 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRR-RGHYLIG-VSRQQ--STCEKAV----ERQLVDEAGQDLSLL-Q------TAKIIFLC   64 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHHH----HTTSCSEEESCGGGG-T------TCSEEEEC
T ss_pred             CEEEEEcC-cHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH----hCCCCccccCCHHHh-C------CCCEEEEE
Confidence            58999997 9999999998875 4677654 56542  1222221    2333  246677776 4      69999999


Q ss_pred             CCchhHHHHHHHHHHc---CCCeEEeCCCCCHHHHHHHHHH
Q 022057          114 TDASTVYDNVKQATAF---GMRSVVYVPHIQLETVSALSAF  151 (303)
Q Consensus       114 T~p~a~~~~~~~al~~---g~~vVigTTG~~~e~~~~L~~~  151 (303)
                      ++|..+.+.+......   +. +|+-+.+.+....+.+.+.
T Consensus        65 v~~~~~~~~~~~l~~~~~~~~-~vv~~~~~~~~~~~~~~~~  104 (279)
T 2f1k_A           65 TPIQLILPTLEKLIPHLSPTA-IVTDVASVKTAIAEPASQL  104 (279)
T ss_dssp             SCHHHHHHHHHHHGGGSCTTC-EEEECCSCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCC-EEEECCCCcHHHHHHHHHH
Confidence            9888777777655432   33 5555556665555555444

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=97.42  E-value=0.00032  Score=66.05  Aligned_cols=134  Identities=17%  Similarity=0.126  Sum_probs=79.0

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCcchhhhh--cC---CCCCCeeec--
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGEDIGMVC--DM---EQPLEIPVM--   91 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~~~-------------~g~d~~~~~--g~---~~~~gv~v~--   91 (303)
                      |++||+|+|+ ||+||.+.+++.+.  +++|+|++-|+..             .|+--+++.  +.   .....++++  
T Consensus         1 m~~kv~INGf-GrIGr~v~Ra~~~~~~~~~~ivaiNd~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e   79 (335)
T 3doc_A            1 MAVRVAINGF-GRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVEVAGDTIDVGYGPIKVHAV   79 (335)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHTTCCSEEEEEEECSSCHHHHHHHHHEETTTEECSSCCEECSSEEESSSSEEEEECC
T ss_pred             CCEEEEEECC-CcHHHHHHHHHHhccCCCeEEEEEeCCCCHHHHHHHhcccCCCCCCCCeEEEecCEEEECCEEEEEEee
Confidence            6799999998 99999999998876  6899999877410             010000000  00   001123443  


Q ss_pred             CCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCC-eEEeCCC----------CCHHHHHHHHHHhhhcCCeEE
Q 022057           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPH----------IQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~-vVigTTG----------~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      .|++++-=   .+.++|+|+++|-.....+.+...++.|.. ||+..+.          .+.+.+      ..+  -.++
T Consensus        80 ~dp~~i~w---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~~p~vV~gVN~~~~------~~~--~~II  148 (335)
T 3doc_A           80 RNPAELPW---KEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPADGADLTVVYGVNNDKL------TKD--HLVI  148 (335)
T ss_dssp             SSTTSSCT---TTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCTTCSEECCTTTTGGGC------CTT--CCEE
T ss_pred             cccccccc---cccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCCCCCCCCEEecccCHHHh------Ccc--CCeE
Confidence            23333210   013789999988777788888999999964 5554442          222221      111  3444


Q ss_pred             EcCCCcHHHHHHHHHHHHhcc
Q 022057          161 IAPTLSIGSILLQQAAISASF  181 (303)
Q Consensus       161 ~a~N~SiGv~ll~~~a~~~~~  181 (303)
                        +|=|=-.|-|.-+++.+-+
T Consensus       149 --SNasCTTn~Lap~lk~L~d  167 (335)
T 3doc_A          149 --SNASCTTNCLAPVAQVLND  167 (335)
T ss_dssp             --ECCCHHHHHHHHHHHHHHH
T ss_pred             --ecCchhhhhhHHhHHHHHH
Confidence              5666666666666666654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.38  E-value=0.0017  Score=54.58  Aligned_cols=132  Identities=14%  Similarity=0.067  Sum_probs=75.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-c---CCHHHHHhccccCCCccEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVv  110 (303)
                      ..+|+|+|+ |+||+.+++.+.+..+.++++ +|++.  .....+.    +.|+.+ +   ++.+ .+.+.....++|++
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~v-id~~~--~~~~~~~----~~g~~~~~gd~~~~~-~l~~~~~~~~ad~v  109 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDELRARYGKISLG-IEIRE--EAAQQHR----SEGRNVISGDATDPD-FWERILDTGHVKLV  109 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHHHHHHCSCEEE-EESCH--HHHHHHH----HTTCCEEECCTTCHH-HHHTBCSCCCCCEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhccCCeEEE-EECCH--HHHHHHH----HCCCCEEEcCCCCHH-HHHhccCCCCCCEE
Confidence            468999998 999999999887532677664 56542  1122221    223332 2   2322 22210001468999


Q ss_pred             EEcCCchhH-HHHHHHHHHcC-CCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhc
Q 022057          111 IDFTDASTV-YDNVKQATAFG-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS  180 (303)
Q Consensus       111 IDfT~p~a~-~~~~~~al~~g-~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~  180 (303)
                      |.++..... ...+..+.+.+ ...|+.. .-+++..+.+    ++.|+..+++|....|-.+...+.+.+.
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~-~~~~~~~~~l----~~~G~~~vi~p~~~~a~~l~~~~~~~~~  176 (183)
T 3c85_A          110 LLAMPHHQGNQTALEQLQRRNYKGQIAAI-AEYPDQLEGL----LESGVDAAFNIYSEAGSGFARHVCKQLE  176 (183)
T ss_dssp             EECCSSHHHHHHHHHHHHHTTCCSEEEEE-ESSHHHHHHH----HHHTCSEEEEHHHHHHHHHHHHHHHHHC
T ss_pred             EEeCCChHHHHHHHHHHHHHCCCCEEEEE-ECCHHHHHHH----HHcCCCEEEchHHHHHHHHHHHHHHhcC
Confidence            987764443 44445555555 2233333 2334443333    3346788898988888777777776654

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=97.37  E-value=0.00052  Score=64.52  Aligned_cols=152  Identities=20%  Similarity=0.204  Sum_probs=88.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-C-------------CCcchhhhhcCC-----CCCCeeec--CC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-S-------------VGEDIGMVCDME-----QPLEIPVM--SD   93 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-~-------------~g~d~~~~~g~~-----~~~gv~v~--~d   93 (303)
                      |+||+|+|+ ||+||.+.+++.+.+++|+|++=|+. .             .|+--++..--+     ....++++  .|
T Consensus         1 ~~kv~INGf-GrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~d   79 (332)
T 3pym_A            1 MVRVAINGF-GRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKKIATYQERD   79 (332)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHSTTCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             CeEEEEECC-CcHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEEeecc
Confidence            589999998 99999999999888899999987741 0             011000000000     00123343  24


Q ss_pred             HHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCC-eEEeCC---------CCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP---------HIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~-vVigTT---------G~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                      ++++-=   .+.++|+|+++|-.....+.+...++.|.. ||+..|         |.+.+.++      .+  -.++  +
T Consensus        80 p~~i~w---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~p~vV~gVN~~~~~------~~--~~II--S  146 (332)
T 3pym_A           80 PANLPW---GSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYT------SD--LKIV--S  146 (332)
T ss_dssp             GGGSCT---TTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCC------TT--CCEE--E
T ss_pred             cccCCc---cccCccEEEEecccccCHHHHHHHHHcCCCEEEECCCCCCCCeEeeccchhhcC------cc--ccEE--e
Confidence            443310   014789999988877888888999999964 555443         33333221      11  3444  5


Q ss_pred             CCcHHHHHHHHHHHHhccCCCcEE---EEEccC----C-CCCCCcH
Q 022057          164 TLSIGSILLQQAAISASFHYKNVE---IVESRP----N-ARDFPSP  201 (303)
Q Consensus       164 N~SiGv~ll~~~a~~~~~~~~die---IiE~Hh----~-K~DaPSG  201 (303)
                      |=|=-.|-|.-+++.+-+. |.|+   +.-.|.    + -.|.||+
T Consensus       147 nasCTTn~Lap~lkvL~d~-fGI~~g~mTTvha~T~~Q~~vDg~~~  191 (332)
T 3pym_A          147 NASCTTNCLAPLAKVINDA-FGIEEGLMTTVHSLTATQKTVDGPSH  191 (332)
T ss_dssp             CCCHHHHHHHHHHHHHHHH-HCEEEEEEEEEEECCTTSCSSSCCCT
T ss_pred             cCcchhhhhHHHHHHHHHh-cCeEEEEEEEEeeccccchhccCCCc
Confidence            5566666666666666432 2332   233363    2 4688875

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.37  E-value=0.0013  Score=64.32  Aligned_cols=125  Identities=13%  Similarity=0.162  Sum_probs=75.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC----------------CCCCeeecCCHHHHH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME----------------QPLEIPVMSDLTMVL   98 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~----------------~~~gv~v~~dl~~~l   98 (303)
                      .+||+|+|. |.||..++..+.+ .++++++ +|.+.  ..+..+..-.                ....+..++|+++++
T Consensus         8 ~~~~~vIGl-G~vG~~~A~~La~-~G~~V~~-~D~~~--~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~   82 (446)
T 4a7p_A            8 SVRIAMIGT-GYVGLVSGACFSD-FGHEVVC-VDKDA--RKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGV   82 (446)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSCS--TTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             ceEEEEEcC-CHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHH
Confidence            489999997 9999999998874 5888875 66542  1122221100                012356788998888


Q ss_pred             hccccCCCccEEEEc--CCch---------hHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhh----cCCeEE
Q 022057           99 GSISQSKARAVVIDF--TDAS---------TVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDK----ASMGCL  160 (303)
Q Consensus        99 ~~~~~~~~~DVvIDf--T~p~---------a~~~~~~~al---~~g~~vVigTTG~~~e~~~~L~~~a~~----~~i~vv  160 (303)
                            .++|++|-+  |+++         .+.+.++...   +.|.-+|..+| ..+...+++.+..++    .+.+++
T Consensus        83 ------~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~ST-v~pgtt~~l~~~l~e~~~~~d~~v~  155 (446)
T 4a7p_A           83 ------KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKST-VPVGTGDEVERIIAEVAPNSGAKVV  155 (446)
T ss_dssp             ------TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSC-CCTTHHHHHHHHHHHHSTTSCCEEE
T ss_pred             ------hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCC-CCchHHHHHHHHHHHhCCCCCceEE
Confidence                  479999877  4432         2455444433   34555555544 433333344433332    358999


Q ss_pred             EcCCCcHHHHH
Q 022057          161 IAPTLSIGSIL  171 (303)
Q Consensus       161 ~a~N~SiGv~l  171 (303)
                      .+|.|.--..+
T Consensus       156 ~~Pe~a~eG~a  166 (446)
T 4a7p_A          156 SNPEFLREGAA  166 (446)
T ss_dssp             ECCCCCCTTSH
T ss_pred             eCcccccccch
Confidence            99998765543

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.37  E-value=0.001  Score=59.15  Aligned_cols=89  Identities=16%  Similarity=0.159  Sum_probs=58.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcc--------------hhhhhcCCCCCCeeecCCHHHHHhc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED--------------IGMVCDMEQPLEIPVMSDLTMVLGS  100 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d--------------~~~~~g~~~~~gv~v~~dl~~~l~~  100 (303)
                      ++||+|+|+ |.||+.+++.+.+ .++++.. +|++.  ..              ..++.   ...+...+.|++++++ 
T Consensus        19 ~~kIgiIG~-G~mG~alA~~L~~-~G~~V~~-~~r~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~e~~~-   89 (245)
T 3dtt_A           19 GMKIAVLGT-GTVGRTMAGALAD-LGHEVTI-GTRDP--KATLARAEPDAMGAPPFSQWL---PEHPHVHLAAFADVAA-   89 (245)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHTCC-------CCHHHHG---GGSTTCEEEEHHHHHH-
T ss_pred             CCeEEEECC-CHHHHHHHHHHHH-CCCEEEE-EeCCh--hhhhhhhhhhhhcchhhhHHH---hhcCceeccCHHHHHh-
Confidence            589999997 9999999998885 4778764 67642  11              12222   1234445677888874 


Q ss_pred             cccCCCccEEEEcCCchhHHHHHHHH---HHcCCCeEEeC
Q 022057          101 ISQSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYV  137 (303)
Q Consensus       101 ~~~~~~~DVvIDfT~p~a~~~~~~~a---l~~g~~vVigT  137 (303)
                           ++|+||-+.++....+.+...   ...|.-+|..+
T Consensus        90 -----~aDvVilavp~~~~~~~~~~i~~~~l~g~ivi~~s  124 (245)
T 3dtt_A           90 -----GAELVVNATEGASSIAALTAAGAENLAGKILVDIA  124 (245)
T ss_dssp             -----HCSEEEECSCGGGHHHHHHHHCHHHHTTSEEEECC
T ss_pred             -----cCCEEEEccCcHHHHHHHHHhhhhhcCCCEEEECC
Confidence                 689999888887776665432   12455555444

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.37  E-value=0.00046  Score=59.45  Aligned_cols=34  Identities=15%  Similarity=0.103  Sum_probs=28.7

Q ss_pred             Ccee-EEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           34 SNIK-VIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        34 ~~ik-V~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      |||| |.|.|++|.+|+.+++.+.+.+++++++..
T Consensus         3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~   37 (221)
T 3r6d_A            3 AMYXYITILGAAGQIAQXLTATLLTYTDMHITLYG   37 (221)
T ss_dssp             CSCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             ceEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEe
Confidence            4566 999999999999999999856788887654

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=97.36  E-value=0.0014  Score=60.96  Aligned_cols=123  Identities=12%  Similarity=0.129  Sum_probs=72.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC-------cEEEEEEecCCC--Cc-chhhhh----------cCCCCCCeeecCCH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG-------MEVAGAIDSHSV--GE-DIGMVC----------DMEQPLEIPVMSDL   94 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~-------~eLvg~vd~~~~--g~-d~~~~~----------g~~~~~gv~v~~dl   94 (303)
                      +|||+|+|+ |.||..++..+.+. +       .++. ++|++..  ++ ....+.          +..-..++..++|+
T Consensus         8 ~mkI~iIG~-G~mG~~~a~~l~~~-g~~~~~~~~~V~-~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
T 1x0v_A            8 SKKVCIVGS-GNWGSAIAKIVGGN-AAQLAQFDPRVT-MWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDV   84 (354)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHH-HHHCTTEEEEEE-EECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSH
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhc-CCcccCCCCeEE-EEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCH
Confidence            379999998 99999999988753 3       5554 5665421  00 111111          00001235567888


Q ss_pred             HHHHhccccCCCccEEEEcCCchhHHHHHHHHHH---cCCCeEEeCCCCCH-----HHH-HHHHHHhhhcCCeEEEcCCC
Q 022057           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL-----ETV-SALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~---~g~~vVigTTG~~~-----e~~-~~L~~~a~~~~i~vv~a~N~  165 (303)
                      ++++      .++|+||-+..+....+.+.....   .+..+|.-++|++.     +.+ +.+.+..- ...+++..||+
T Consensus        85 ~~~~------~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~v~~gp~~  157 (354)
T 1x0v_A           85 VQAA------EDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLG-IPMSVLMGANI  157 (354)
T ss_dssp             HHHH------TTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHT-CCEEEEECSCC
T ss_pred             HHHH------cCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcC-CCEEEEECCCc
Confidence            8877      479999988887766666655433   34556655557652     122 22332211 22567888998


Q ss_pred             cH
Q 022057          166 SI  167 (303)
Q Consensus       166 Si  167 (303)
                      +-
T Consensus       158 a~  159 (354)
T 1x0v_A          158 AS  159 (354)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.00097  Score=64.10  Aligned_cols=135  Identities=13%  Similarity=0.127  Sum_probs=77.1

Q ss_pred             eecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCC------cEEEEEEecCC--CCc-----------chhhhhcCCCCCC
Q 022057           27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG------MEVAGAIDSHS--VGE-----------DIGMVCDMEQPLE   87 (303)
Q Consensus        27 ~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~------~eLvg~vd~~~--~g~-----------d~~~~~g~~~~~g   87 (303)
                      ++....+.|+||+|+|+ |.+|.+++..+.++-.      -.-|-.+.++.  .++           ....+-|..-+-.
T Consensus        26 ~~~~~~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~  104 (391)
T 4fgw_A           26 VSLKAAEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDN  104 (391)
T ss_dssp             -------CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSS
T ss_pred             ccccccCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCC
Confidence            33444455799999998 9999999998875321      01233343321  111           1111223222345


Q ss_pred             eeecCCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHH---HcCCCeEEeCCCCCHH-----HH-HHHHHHhhhcCCe
Q 022057           88 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLE-----TV-SALSAFCDKASMG  158 (303)
Q Consensus        88 v~v~~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al---~~g~~vVigTTG~~~e-----~~-~~L~~~a~~~~i~  158 (303)
                      +.+++|+++++      .++|++|-..+...+.+.+....   ..+.++|..+-|+...     -. +.+.+.-. ..+.
T Consensus       105 i~~t~dl~~al------~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~-~~~~  177 (391)
T 4fgw_A          105 LVANPDLIDSV------KDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELG-IQCG  177 (391)
T ss_dssp             EEEESCHHHHH------TTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHC-CEEE
T ss_pred             cEEeCCHHHHH------hcCCEEEEECChhhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhC-ccce
Confidence            77789999998      47999986666666666666543   4567788777787411     01 22322211 2356


Q ss_pred             EEEcCCCcHHH
Q 022057          159 CLIAPTLSIGS  169 (303)
Q Consensus       159 vv~a~N~SiGv  169 (303)
                      ++-.|||+-=|
T Consensus       178 vLsGPs~A~EV  188 (391)
T 4fgw_A          178 ALSGANIATEV  188 (391)
T ss_dssp             EEECSCCHHHH
T ss_pred             eccCCchHHHh
Confidence            77889998665

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*

Probab=97.35  E-value=0.00042  Score=65.52  Aligned_cols=100  Identities=21%  Similarity=0.159  Sum_probs=62.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-C-------------CCcchhhh--hcC--C-CCCCeeecC--C
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-S-------------VGEDIGMV--CDM--E-QPLEIPVMS--D   93 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-~-------------~g~d~~~~--~g~--~-~~~gv~v~~--d   93 (303)
                      .+||+|+|+ ||+||.+.+++.+++++|||++-|+. .             .|+--++.  -+-  . ....+.++.  |
T Consensus        11 ~~kv~INGf-GrIGr~v~ra~~~~~~~evvaInd~~~~~~~~a~l~~yDS~hg~~~~~v~~~~~~l~v~Gk~i~v~~~~d   89 (345)
T 2b4r_O           11 ATKLGINGF-GRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKD   89 (345)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSS
T ss_pred             heEEEEeCC-chHHHHHHHHHhhCCCcEEEEEcCCCCChHHHHHHhccCCCCCcCCCCEEEcCCEEEECCEEEEEEEcCC
Confidence            589999997 99999999999999999999998821 0             01100000  000  0 001123332  3


Q ss_pred             HHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCC-eEEeCC
Q 022057           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (303)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~-vVigTT  138 (303)
                      ++++--   .+.++|+|+++|......+.+...++.|.. |||-.+
T Consensus        90 p~~~~w---~~~gvDiV~estG~f~s~e~a~~hl~aGakkVVIsap  132 (345)
T 2b4r_O           90 PSQIPW---GKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAP  132 (345)
T ss_dssp             GGGCCH---HHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSC
T ss_pred             cccCcc---cccCCCEEEECcCccccHhhHHHHHHCCCCEEEECCC
Confidence            333210   002689999888777778888888888875 565433

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.33  E-value=0.0024  Score=58.39  Aligned_cols=90  Identities=12%  Similarity=0.171  Sum_probs=59.7

Q ss_pred             CceeEEEEc-CCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           34 SNIKVIING-AVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        34 ~~ikV~V~G-~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ||.||+|+| + |.||..++..+.+ .++++. ++|++.   +                .+.++++      .++|+||-
T Consensus        20 ~~~~I~iIGg~-G~mG~~la~~l~~-~G~~V~-~~~~~~---~----------------~~~~~~~------~~aDvVil   71 (298)
T 2pv7_A           20 DIHKIVIVGGY-GKLGGLFARYLRA-SGYPIS-ILDRED---W----------------AVAESIL------ANADVVIV   71 (298)
T ss_dssp             TCCCEEEETTT-SHHHHHHHHHHHT-TTCCEE-EECTTC---G----------------GGHHHHH------TTCSEEEE
T ss_pred             CCCEEEEEcCC-CHHHHHHHHHHHh-CCCeEE-EEECCc---c----------------cCHHHHh------cCCCEEEE
Confidence            567999999 7 9999999998874 466655 355532   0                1345666      47999998


Q ss_pred             cCCchhHHHHHHHHHHc-C-CCeEEeCCCCCHHHHHHHHHH
Q 022057          113 FTDASTVYDNVKQATAF-G-MRSVVYVPHIQLETVSALSAF  151 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~-g-~~vVigTTG~~~e~~~~L~~~  151 (303)
                      +.+|....+.+...... + -.+|+-.++......+.+.+.
T Consensus        72 avp~~~~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~  112 (298)
T 2pv7_A           72 SVPINLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV  112 (298)
T ss_dssp             CSCGGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHh
Confidence            88888887777765432 1 135555556655444455443

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.31  E-value=0.00065  Score=62.10  Aligned_cols=104  Identities=13%  Similarity=0.152  Sum_probs=58.0

Q ss_pred             CCCCC-ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhh-----------h--hcCCCC----------
Q 022057           30 NPPQS-NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGM-----------V--CDMEQP----------   85 (303)
Q Consensus        30 ~~~~~-~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~-----------~--~g~~~~----------   85 (303)
                      +++++ |.||+|+|+ |.||..++..+.. .+++++ ++|++.  ..+..           +  .|....          
T Consensus         9 ~~~~~~~~~I~VIG~-G~mG~~iA~~la~-~G~~V~-~~d~~~--~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~   83 (302)
T 1f0y_A            9 SAKKIIVKHVTVIGG-GLMGAGIAQVAAA-TGHTVV-LVDQTE--DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEK   83 (302)
T ss_dssp             ---CCCCCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred             ccccccCCEEEEECC-CHHHHHHHHHHHh-CCCeEE-EEECCH--HHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHH
Confidence            33333 468999998 9999999998875 578876 577542  11110           0  010000          


Q ss_pred             --CCeeecCCHHHHHhccccCCCccEEEEcCCchh-H-HHHHHHHHH---cCCCeEEeCCCCCHHH
Q 022057           86 --LEIPVMSDLTMVLGSISQSKARAVVIDFTDAST-V-YDNVKQATA---FGMRSVVYVPHIQLET  144 (303)
Q Consensus        86 --~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p~a-~-~~~~~~al~---~g~~vVigTTG~~~e~  144 (303)
                        ..+..++|+++.+      .++|+||.+.++.. . .+.+....+   .+.-++.-|++++.++
T Consensus        84 ~~~~i~~~~~~~~~~------~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~  143 (302)
T 1f0y_A           84 TLSTIATSTDAASVV------HSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITS  143 (302)
T ss_dssp             HHHTEEEESCHHHHT------TSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHH
T ss_pred             HHhceEEecCHHHhh------cCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHH
Confidence              1355678888776      47999998775432 2 233333222   2332333455887654

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.30  E-value=0.003  Score=62.35  Aligned_cols=119  Identities=11%  Similarity=0.087  Sum_probs=71.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |+||+|+|+ |.||+.++..+.+ .+++++ ++|++.  .....+...+ ....+..+.|++++++.+   .++|+||-.
T Consensus         4 ~~kIgiIGl-G~MG~~lA~~L~~-~G~~V~-v~dr~~--~~~~~l~~~g~~g~~i~~~~s~~e~v~~l---~~aDvVil~   75 (484)
T 4gwg_A            4 QADIALIGL-AVMGQNLILNMND-HGFVVC-AFNRTV--SKVDDFLANEAKGTKVVGAQSLKEMVSKL---KKPRRIILL   75 (484)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHH-TTCCEE-EECSST--HHHHHHHHTTTTTSSCEECSSHHHHHHTB---CSSCEEEEC
T ss_pred             CCEEEEECh-hHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHHhcccCCCceeccCCHHHHHhhc---cCCCEEEEe
Confidence            579999997 9999999998885 477766 567653  2222332110 011234468899987521   369999977


Q ss_pred             CCch-hHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEc
Q 022057          114 TDAS-TVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA  162 (303)
Q Consensus       114 T~p~-a~~~~~~~al---~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a  162 (303)
                      .++. .+.+.+...+   +.|.-+|.++|+... +..++.+..++.|+..+=+
T Consensus        76 Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~~~-~t~~~~~~l~~~Gi~fvd~  127 (484)
T 4gwg_A           76 VKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYR-DTTRRCRDLKAKGILFVGS  127 (484)
T ss_dssp             SCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHH-HHHHHHHHHHHTTCEEEEE
T ss_pred             cCChHHHHHHHHHHHHhcCCCCEEEEcCCCCch-HHHHHHHHHHhhccccccC
Confidence            7663 5555554443   345555656666533 3334444455556654433

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.30  E-value=0.00028  Score=62.75  Aligned_cols=100  Identities=16%  Similarity=0.184  Sum_probs=62.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      |||+|+|+ |.||+.++..+.+. + .++ .++|++.  ..+..+.   ..+|+.++.|+++++       ++|+||-++
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~-g~~~v-~~~~r~~--~~~~~~~---~~~g~~~~~~~~~~~-------~~D~vi~~v   65 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQ-GGYRI-YIANRGA--EKRERLE---KELGVETSATLPELH-------SDDVLILAV   65 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH-CSCEE-EEECSSH--HHHHHHH---HHTCCEEESSCCCCC-------TTSEEEECS
T ss_pred             CEEEEECc-hHHHHHHHHHHHHC-CCCeE-EEECCCH--HHHHHHH---HhcCCEEeCCHHHHh-------cCCEEEEEe
Confidence            58999998 99999999988754 4 555 4577642  2222222   124666666665543       589999888


Q ss_pred             CchhHHHHHHHHHHcCCCeEEeC-CCCCHHHHHHHHHHhhh
Q 022057          115 DASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDK  154 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVigT-TG~~~e~~~~L~~~a~~  154 (303)
                      +|..+.+.+......+. +|+-. .|++.+   .|.+...+
T Consensus        66 ~~~~~~~v~~~l~~~~~-ivv~~~~g~~~~---~l~~~~~~  102 (263)
T 1yqg_A           66 KPQDMEAACKNIRTNGA-LVLSVAAGLSVG---TLSRYLGG  102 (263)
T ss_dssp             CHHHHHHHHTTCCCTTC-EEEECCTTCCHH---HHHHHTTS
T ss_pred             CchhHHHHHHHhccCCC-EEEEecCCCCHH---HHHHHcCC
Confidence            87776666653321244 44444 588763   45555443

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=97.26  E-value=0.00055  Score=64.43  Aligned_cols=99  Identities=27%  Similarity=0.232  Sum_probs=63.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec-------------CCCCcchhhhh--c--CC-CCCCeeecC--CHH
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-------------HSVGEDIGMVC--D--ME-QPLEIPVMS--DLT   95 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~-------------~~~g~d~~~~~--g--~~-~~~gv~v~~--dl~   95 (303)
                      +||+|+|+ |++||.+.+.+.++ +++++++-|.             +..|+-.++..  +  +. ....++++.  |++
T Consensus         1 ikVgInG~-G~IGr~vlr~l~~~-~~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   78 (331)
T 2g82_O            1 MKVGINGF-GRIGRQVFRILHSR-GVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK   78 (331)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH-TCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred             CEEEEECc-CHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCChh
Confidence            58999998 99999999998887 9999997763             11121110000  0  00 011344442  444


Q ss_pred             HHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCC-CeEEeCCC
Q 022057           96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVPH  139 (303)
Q Consensus        96 ~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~-~vVigTTG  139 (303)
                      ++--   .+.++|+|+++|......+.+...++.|. .+||..++
T Consensus        79 ~l~w---~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsaps  120 (331)
T 2g82_O           79 EIPW---AEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPA  120 (331)
T ss_dssp             GSCT---TTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred             hCcc---cccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCCC
Confidence            3310   01368999999988888999999999986 46665543

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.24  E-value=0.0011  Score=61.46  Aligned_cols=93  Identities=16%  Similarity=0.141  Sum_probs=59.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---cCC---C----CCCe-eecCCHHHHHhcccc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DME---Q----PLEI-PVMSDLTMVLGSISQ  103 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---g~~---~----~~gv-~v~~dl~~~l~~~~~  103 (303)
                      +|||+|+|+ |.||..++..+.+ .+++++ ++|++.  ..+..+.   +..   .    ...+ ..++++++++     
T Consensus         4 ~mki~iiG~-G~~G~~~a~~L~~-~g~~V~-~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   73 (359)
T 1bg6_A            4 SKTYAVLGL-GNGGHAFAAYLAL-KGQSVL-AWDIDA--QRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV-----   73 (359)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH-----
T ss_pred             cCeEEEECC-CHHHHHHHHHHHh-CCCEEE-EEeCCH--HHHHHHHhcCCeEEeccccccccccceecCCHHHHH-----
Confidence            379999998 9999999998875 567755 566531  1111111   100   0    0011 3567888877     


Q ss_pred             CCCccEEEEcCCchhHHHHHHHHH---HcCCCeEEeCCC
Q 022057          104 SKARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPH  139 (303)
Q Consensus       104 ~~~~DVvIDfT~p~a~~~~~~~al---~~g~~vVigTTG  139 (303)
                       .++|+||.++.+..+.+.+....   +.+..+|+. .|
T Consensus        74 -~~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~-~~  110 (359)
T 1bg6_A           74 -KDADVILIVVPAIHHASIAANIASYISEGQLIILN-PG  110 (359)
T ss_dssp             -TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES-SC
T ss_pred             -hcCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEc-CC
Confidence             47999998888877777766553   345556655 55

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.24  E-value=0.0033  Score=51.56  Aligned_cols=121  Identities=11%  Similarity=0.165  Sum_probs=68.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cC---CHHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS---DLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~---dl~~~l~~~~~~~~~DVvI  111 (303)
                      .+|+|+|+ |.||+.+++.+.+ .+.+++. +|++.  .....+.   ...++.+ ..   +.+.+.+.  ...++|+||
T Consensus        20 ~~v~IiG~-G~iG~~la~~L~~-~g~~V~v-id~~~--~~~~~~~---~~~g~~~~~~d~~~~~~l~~~--~~~~ad~Vi   89 (155)
T 2g1u_A           20 KYIVIFGC-GRLGSLIANLASS-SGHSVVV-VDKNE--YAFHRLN---SEFSGFTVVGDAAEFETLKEC--GMEKADMVF   89 (155)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEEE-EESCG--GGGGGSC---TTCCSEEEESCTTSHHHHHTT--TGGGCSEEE
T ss_pred             CcEEEECC-CHHHHHHHHHHHh-CCCeEEE-EECCH--HHHHHHH---hcCCCcEEEecCCCHHHHHHc--CcccCCEEE
Confidence            58999998 9999999998875 4677664 56532  1111111   0233322 22   22222210  013689999


Q ss_pred             EcCCchhHHHHHHHHH-H-cCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHH
Q 022057          112 DFTDASTVYDNVKQAT-A-FGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (303)
Q Consensus       112 DfT~p~a~~~~~~~al-~-~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~  173 (303)
                      .++........+...+ + .+...++..+ +..  ..+.+    ++.|+. ++.|....+-.+..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~--~~~~l----~~~G~~-vi~p~~~~a~~l~~  147 (155)
T 2g1u_A           90 AFTNDDSTNFFISMNARYMFNVENVIARVYDPE--KIKIF----EENGIK-TICPAVLMIEKVKE  147 (155)
T ss_dssp             ECSSCHHHHHHHHHHHHHTSCCSEEEEECSSGG--GHHHH----HTTTCE-EECHHHHHHHHHHH
T ss_pred             EEeCCcHHHHHHHHHHHHHCCCCeEEEEECCHH--HHHHH----HHCCCc-EEcHHHHHHHHHHH
Confidence            9887666555444444 3 5655565544 332  22222    346788 88888777754443

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.20  E-value=0.001  Score=57.27  Aligned_cols=33  Identities=27%  Similarity=0.422  Sum_probs=28.0

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      +|+||.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         3 ~m~~ilItGatG~iG~~l~~~L~~-~g~~V~~~~   35 (227)
T 3dhn_A            3 KVKKIVLIGASGFVGSALLNEALN-RGFEVTAVV   35 (227)
T ss_dssp             CCCEEEEETCCHHHHHHHHHHHHT-TTCEEEEEC
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHH-CCCEEEEEE
Confidence            368999999999999999999885 468887754

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.19  E-value=0.0045  Score=48.78  Aligned_cols=124  Identities=13%  Similarity=0.278  Sum_probs=71.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-c---CCHHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |||+|+|+ |+||+.+++.+.+ .+.+++ ++|++.  .....+.   ...++.+ .   .+.+.+.+.  ...++|++|
T Consensus         5 m~i~IiG~-G~iG~~~a~~L~~-~g~~v~-~~d~~~--~~~~~~~---~~~~~~~~~~d~~~~~~l~~~--~~~~~d~vi   74 (140)
T 1lss_A            5 MYIIIAGI-GRVGYTLAKSLSE-KGHDIV-LIDIDK--DICKKAS---AEIDALVINGDCTKIKTLEDA--GIEDADMYI   74 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHHH---HHCSSEEEESCTTSHHHHHHT--TTTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCeEE-EEECCH--HHHHHHH---HhcCcEEEEcCCCCHHHHHHc--CcccCCEEE
Confidence            68999998 9999999998875 467766 456532  1122221   1123322 2   233332211  014789999


Q ss_pred             EcCCchhHHHHH-HHHHHcCC-CeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH
Q 022057          112 DFTDASTVYDNV-KQATAFGM-RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (303)
Q Consensus       112 DfT~p~a~~~~~-~~al~~g~-~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~  175 (303)
                      .++..+.....+ ..+.+.+. .+|+-+++....  +.+    ++.|+..+++|....+-.+...+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--~~l----~~~g~~~v~~p~~~~~~~~~~~~  134 (140)
T 1lss_A           75 AVTGKEEVNLMSSLLAKSYGINKTIARISEIEYK--DVF----ERLGVDVVVSPELIAANYIEKLI  134 (140)
T ss_dssp             ECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHH--HHH----HHTTCSEEECHHHHHHHHHHHHH
T ss_pred             EeeCCchHHHHHHHHHHHcCCCEEEEEecCHhHH--HHH----HHcCCCEEECHHHHHHHHHHHHh
Confidence            887665443333 34444553 566655555432  223    34678888988888877665444

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=97.19  E-value=0.00038  Score=65.35  Aligned_cols=91  Identities=16%  Similarity=0.102  Sum_probs=59.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecC-CHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVvID  112 (303)
                      |||+|+|++|++|+.+++.+.  ..|..+++...+....|+... +.|    ..+.+++ +.+   .   +  ++|+|++
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~-~~g----~~i~v~~~~~~---~---~--~~DvV~~   67 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLA-FRG----EEIPVEPLPEG---P---L--PVDLVLA   67 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEE-ETT----EEEEEEECCSS---C---C--CCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEE-EcC----ceEEEEeCChh---h---c--CCCEEEE
Confidence            589999999999999999988  567777764433322222211 111    1233322 111   1   1  5899998


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCCC
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVPH  139 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTTG  139 (303)
                      ++......+.+..+++.|..+|.-+..
T Consensus        68 a~g~~~s~~~a~~~~~~G~~vId~s~~   94 (331)
T 2yv3_A           68 SAGGGISRAKALVWAEGGALVVDNSSA   94 (331)
T ss_dssp             CSHHHHHHHHHHHHHHTTCEEEECSSS
T ss_pred             CCCccchHHHHHHHHHCCCEEEECCCc
Confidence            887788899999999999877655433

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*

Probab=97.18  E-value=0.00086  Score=63.65  Aligned_cols=152  Identities=17%  Similarity=0.095  Sum_probs=86.6

Q ss_pred             CceeEEEEcCCcHHHHHHHHH----HHhcCCcEEEEEEecCCCCcchhhhh---------cC----------------CC
Q 022057           34 SNIKVIINGAVKEIGRAAVIA----VTKARGMEVAGAIDSHSVGEDIGMVC---------DM----------------EQ   84 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~----i~~~~~~eLvg~vd~~~~g~d~~~~~---------g~----------------~~   84 (303)
                      |++||+|+|+ ||+||.+.++    +.+.+++|+|++-|+.   .|+..++         |.                +.
T Consensus         1 m~~kv~INGF-GrIGr~v~Ra~~~~~~~~~~~~vvaINd~~---~d~~~~a~llkyDS~hG~f~~~v~~~~~~~~~~~~~   76 (359)
T 3ids_C            1 MPIKVGINGF-GRIGRMVFQALCEDGLLGTEIDVVAVVDMN---TDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDD   76 (359)
T ss_dssp             CCEEEEEECT-THHHHHHHHHHHHTTCBTTTEEEEEEECSS---CCHHHHHHHHHEETTTEECSSCEEEECSCTTSSSCC
T ss_pred             CceEEEEECC-ChHHHHHHHHhHHHHhcCCCcEEEEEecCC---CCHHHHHHHhcccCCCCCEeeEEEecccccccCCCC
Confidence            6799999998 9999999998    6667889999988731   0111000         00                00


Q ss_pred             -----CCCeeecC---CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCC-eEEeCCC----------CCHHHH
Q 022057           85 -----PLEIPVMS---DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPH----------IQLETV  145 (303)
Q Consensus        85 -----~~gv~v~~---dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~-vVigTTG----------~~~e~~  145 (303)
                           ...++++.   |++++-=   .+.++|+|+++|-.....+.+...++.|.. ||+..+.          .+.+.+
T Consensus        77 ~l~inGk~I~v~~~e~dp~~i~w---~~~gvDiVlesTG~f~s~e~A~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~  153 (359)
T 3ids_C           77 TLVVNGHRILCVKAQRNPADLPW---GKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEY  153 (359)
T ss_dssp             EEEETTEEEEECCCCSSTTTSCH---HHHTCCEEEECSSSCCBHHHHTHHHHTTCCEEEESSCCBSSCEECCTTTTGGGC
T ss_pred             EEEECCEEEEEEEccCCcccCCc---cccCccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCCeEEeccCHHHc
Confidence                 01133332   3332100   002689999888777778888888888865 5554332          222221


Q ss_pred             HHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHh-ccCC--CcEEEEEccC----C-CCCCCcH
Q 022057          146 SALSAFCDKASMGCLIAPTLSIGSILLQQAAISA-SFHY--KNVEIVESRP----N-ARDFPSP  201 (303)
Q Consensus       146 ~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~-~~~~--~dieIiE~Hh----~-K~DaPSG  201 (303)
                            .. ..-.++  +|=|=--|-|.-+++.+ -..+  -..-+.-.|.    + -.|.|++
T Consensus       154 ------~~-~~~~II--SNaSCTTn~Lap~lkvL~~d~fGI~~g~mTTvha~T~tQ~~vD~~~~  208 (359)
T 3ids_C          154 ------NP-SEHHVV--SNASCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSV  208 (359)
T ss_dssp             ------CT-TTCSEE--ECCCHHHHHHHHHHHHHHHTTCCCSEEEEEEEEECCTTSBSSSCCCT
T ss_pred             ------CC-CCCCEE--ECCchHhhhHHHhhhhhhhccCCeEEEEEeeeeeccchhhhhcCCcc
Confidence                  11 013445  45555557676677777 5433  2222333463    2 3688876

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.18  E-value=0.0011  Score=62.94  Aligned_cols=84  Identities=15%  Similarity=0.099  Sum_probs=52.7

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe---cCCCCcchhhhhcC-C------CCCC--------ee-ecCCH
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDM-E------QPLE--------IP-VMSDL   94 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd---~~~~g~d~~~~~g~-~------~~~g--------v~-v~~dl   94 (303)
                      |||||+|+|+ |.||..++..+....+.++.. ++   ++.  ..+...... +      ...+        +. +++|+
T Consensus         1 ~~mkI~ViGa-G~~G~~~a~~La~~~G~~V~~-~~~~~r~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (404)
T 3c7a_A            1 MTVKVCVCGG-GNGAHTLSGLAASRDGVEVRV-LTLFADEA--ERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDP   76 (404)
T ss_dssp             -CEEEEEECC-SHHHHHHHHHHTTSTTEEEEE-ECCSTTHH--HHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCH
T ss_pred             CCceEEEECC-CHHHHHHHHHHHhCCCCEEEE-EeCCCCcH--HHHHHHHhhccceeeeecCCCccceeeccceEEeCCH
Confidence            5689999998 999999999886545787764 55   310  111111100 0      0001        22 56788


Q ss_pred             HHHHhccccCCCccEEEEcCCchhHHHHHHHHH
Q 022057           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQAT  127 (303)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al  127 (303)
                      ++++      .++|+||-++.+....+.+....
T Consensus        77 ~~a~------~~aD~Vilav~~~~~~~v~~~l~  103 (404)
T 3c7a_A           77 EIAI------SGADVVILTVPAFAHEGYFQAMA  103 (404)
T ss_dssp             HHHH------TTCSEEEECSCGGGHHHHHHHHT
T ss_pred             HHHh------CCCCEEEEeCchHHHHHHHHHHH
Confidence            8877      47999998887777766665543

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.17  E-value=0.0018  Score=61.03  Aligned_cols=106  Identities=13%  Similarity=0.088  Sum_probs=66.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ++||+|+|+ |.||..+++.+.+ .++++. ++|++.  ......    .+.|+..+.|+++++...  ..++|+||-+.
T Consensus         8 ~~kIgIIG~-G~mG~slA~~L~~-~G~~V~-~~dr~~--~~~~~a----~~~G~~~~~~~~e~~~~a--~~~aDlVilav   76 (341)
T 3ktd_A            8 SRPVCILGL-GLIGGSLLRDLHA-ANHSVF-GYNRSR--SGAKSA----VDEGFDVSADLEATLQRA--AAEDALIVLAV   76 (341)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHH-TTCCEE-EECSCH--HHHHHH----HHTTCCEESCHHHHHHHH--HHTTCEEEECS
T ss_pred             CCEEEEEee-cHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHH----HHcCCeeeCCHHHHHHhc--ccCCCEEEEeC
Confidence            468999997 9999999998885 467765 467642  111222    145666678888877410  01479999888


Q ss_pred             CchhHHHHHHHHHHcCC-CeEEeCCCCCHHHHHHHHHH
Q 022057          115 DASTVYDNVKQATAFGM-RSVVYVPHIQLETVSALSAF  151 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~-~vVigTTG~~~e~~~~L~~~  151 (303)
                      ++....+.+........ .+|+-.++...+-.+.+.+.
T Consensus        77 P~~~~~~vl~~l~~~~~~~iv~Dv~Svk~~i~~~~~~~  114 (341)
T 3ktd_A           77 PMTAIDSLLDAVHTHAPNNGFTDVVSVKTAVYDAVKAR  114 (341)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCEEECCSCSHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHccCCCCEEEEcCCCChHHHHHHHHh
Confidence            88877776655544322 34544445554444455443

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.15  E-value=0.0023  Score=59.00  Aligned_cols=105  Identities=13%  Similarity=0.018  Sum_probs=57.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE-EEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV-VIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV-vIDf  113 (303)
                      ++||.|.|++|.+|+.+++.+.+. +.++.+.......  +.....            .++++..     ..+.+ ..|+
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~--~~~~~~------------~~~~l~~-----~~v~~~~~Dl   69 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDA-HRPTYILARPGPR--SPSKAK------------IFKALED-----KGAIIVYGLI   69 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHT-TCCEEEEECSSCC--CHHHHH------------HHHHHHH-----TTCEEEECCT
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHC-CCCEEEEECCCCC--ChhHHH------------HHHHHHh-----CCcEEEEeec
Confidence            479999999999999999999865 5787765543210  000000            0111111     23332 2355


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCCCCC-HHHHHHHHHHhhhcC-CeEEEc
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVPHIQ-LETVSALSAFCDKAS-MGCLIA  162 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTTG~~-~e~~~~L~~~a~~~~-i~vv~a  162 (303)
                      +.++.+.+.+.   +.+.++|+-+.|.. ......|.++|++.+ ++.++.
T Consensus        70 ~d~~~l~~~~~---~~~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v~  117 (346)
T 3i6i_A           70 NEQEAMEKILK---EHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLP  117 (346)
T ss_dssp             TCHHHHHHHHH---HTTCCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEEC
T ss_pred             CCHHHHHHHHh---hCCCCEEEECCchhhHHHHHHHHHHHHHcCCceEEee
Confidence            55544443332   34677777666542 222345666666666 766663

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.14  E-value=0.0036  Score=50.61  Aligned_cols=130  Identities=8%  Similarity=0.050  Sum_probs=73.6

Q ss_pred             CCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cCC--HHHHHhccccCCC
Q 022057           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSD--LTMVLGSISQSKA  106 (303)
Q Consensus        30 ~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~d--l~~~l~~~~~~~~  106 (303)
                      +|..++-+|.|+|+ |++|+.+++.+.+ .+.+++. +|.+.  .....+.    +.|+.+ +.|  -++.+.+. ...+
T Consensus         2 ~~~~~~~~viIiG~-G~~G~~la~~L~~-~g~~v~v-id~~~--~~~~~~~----~~g~~~i~gd~~~~~~l~~a-~i~~   71 (140)
T 3fwz_A            2 NAVDICNHALLVGY-GRVGSLLGEKLLA-SDIPLVV-IETSR--TRVDELR----ERGVRAVLGNAANEEIMQLA-HLEC   71 (140)
T ss_dssp             CCCCCCSCEEEECC-SHHHHHHHHHHHH-TTCCEEE-EESCH--HHHHHHH----HTTCEEEESCTTSHHHHHHT-TGGG
T ss_pred             CcccCCCCEEEECc-CHHHHHHHHHHHH-CCCCEEE-EECCH--HHHHHHH----HcCCCEEECCCCCHHHHHhc-Cccc
Confidence            56677789999998 9999999998875 5777775 56532  1122221    234432 222  12222210 0136


Q ss_pred             ccEEEEcCCchhH-HHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH
Q 022057          107 RAVVIDFTDASTV-YDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (303)
Q Consensus       107 ~DVvIDfT~p~a~-~~~~~~al~~--g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~  175 (303)
                      +|++|-++..+.. ...+..+.+.  ++++|.-  ..+++..+.|.    +.|+..++.|....+-.++..+
T Consensus        72 ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar--~~~~~~~~~l~----~~G~d~vi~p~~~~a~~i~~~l  137 (140)
T 3fwz_A           72 AKWLILTIPNGYEAGEIVASARAKNPDIEIIAR--AHYDDEVAYIT----ERGANQVVMGEREIARTMLELL  137 (140)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEE--ESSHHHHHHHH----HTTCSEEEEHHHHHHHHHHHHH
T ss_pred             CCEEEEECCChHHHHHHHHHHHHHCCCCeEEEE--ECCHHHHHHHH----HCCCCEEECchHHHHHHHHHHh
Confidence            8999877655443 3333444443  3444432  33444444443    4677888888877777665544

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.13  E-value=0.001  Score=59.49  Aligned_cols=112  Identities=10%  Similarity=0.047  Sum_probs=67.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----cCC---HHHHHhccccCCCcc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKARA  108 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~~d---l~~~l~~~~~~~~~D  108 (303)
                      |||.|.|++|.+|+.+++.+.+.++.++++......   ....+.    ..++.+    ..|   +++++      .++|
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~---~~~~~~----~~~v~~~~~D~~d~~~l~~~~------~~~d   67 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVE---KVPDDW----RGKVSVRQLDYFNQESMVEAF------KGMD   67 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGG---GSCGGG----BTTBEEEECCTTCHHHHHHHT------TTCS
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHH---HHHHhh----hCCCEEEEcCCCCHHHHHHHH------hCCC
Confidence            589999999999999999988766888888664321   111111    122322    223   33444      4789


Q ss_pred             EEEEcCCc--------hhHHHHHHHHHHcCCC-eEE-eCCCC------C-HHHHHHHHHHhhhcCCeEE
Q 022057          109 VVIDFTDA--------STVYDNVKQATAFGMR-SVV-YVPHI------Q-LETVSALSAFCDKASMGCL  160 (303)
Q Consensus       109 VvIDfT~p--------~a~~~~~~~al~~g~~-vVi-gTTG~------~-~e~~~~L~~~a~~~~i~vv  160 (303)
                      +||.++.+        ..+...+..|.++|+. +|. ++.|-      . ......+++..++.++++.
T Consensus        68 ~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~~~~~~~~~~~~~~~~e~~~~~~g~~~~  136 (289)
T 3e48_A           68 TVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYADQHNNPFHMSPYFGYASRLLSTSGIDYT  136 (289)
T ss_dssp             EEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESCCSTTCCSTTHHHHHHHHHHHHHHCCEEE
T ss_pred             EEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcccCCCCCCCCccchhHHHHHHHHHHcCCCEE
Confidence            99987643        3456677888888865 443 22221      1 1122345666666676654

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=97.13  E-value=0.0024  Score=60.08  Aligned_cols=152  Identities=16%  Similarity=0.144  Sum_probs=85.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-C-------------CCcchh-hhh---c--C-CCCCCeeec--
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-S-------------VGEDIG-MVC---D--M-EQPLEIPVM--   91 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-~-------------~g~d~~-~~~---g--~-~~~~gv~v~--   91 (303)
                      |+||+|+|+ ||+||.+.+++.+.+++|+|++-|+. .             .|+--+ ++.   +  + .....++++  
T Consensus         3 ~~kv~INGf-GrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~~v~~~~~~~l~i~Gk~I~v~~e   81 (337)
T 3v1y_O            3 KIKIGINGF-GRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGI   81 (337)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTTSCHHHHHHHHHCCTTTCCCCSSCEEEEETTEEEETTEEEEEECC
T ss_pred             ceEEEEECC-ChHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhhhccCCCcccCceEEEcCCcEEEECCEEEEEEEe
Confidence            589999998 99999999999988899999987751 0             011001 000   0  0 000113333  


Q ss_pred             CCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCC-eEEeCC---------CCCHHHHHHHHHHhhhcCCeEEE
Q 022057           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP---------HIQLETVSALSAFCDKASMGCLI  161 (303)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~-vVigTT---------G~~~e~~~~L~~~a~~~~i~vv~  161 (303)
                      .|++++-=   .+.++|+|+++|-.....+.+...++.|.. ||+..+         |.+.+.++      .+  -.++ 
T Consensus        82 ~dp~~i~w---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~p~vV~gVN~~~~~------~~--~~II-  149 (337)
T 3v1y_O           82 RNPDEIPW---AEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYT------SD--IDIV-  149 (337)
T ss_dssp             SSGGGCCH---HHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEESSCCSSSCBCCTTTTGGGCC------TT--CCEE-
T ss_pred             cCcccCCc---cccCCcEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCeECCCCCHHHcC------CC--CcEE-
Confidence            23333210   002689999888777778888888888864 555443         33333221      11  2444 


Q ss_pred             cCCCcHHHHHHHHHHHHhccCCCcEE---EEEccC----C-CCCCCcH
Q 022057          162 APTLSIGSILLQQAAISASFHYKNVE---IVESRP----N-ARDFPSP  201 (303)
Q Consensus       162 a~N~SiGv~ll~~~a~~~~~~~~die---IiE~Hh----~-K~DaPSG  201 (303)
                       +|=|=-.|-|.-+++.+-+. |.|+   +.-.|.    + ..|.|++
T Consensus       150 -SnasCTTn~Lap~lkvL~d~-fGI~~g~mTTvha~T~~q~~~Dg~~~  195 (337)
T 3v1y_O          150 -SNASCTTNCLAPLAKVIHDN-FGIIEGLMTTVHAITATQKTVDGPSS  195 (337)
T ss_dssp             -ECCCHHHHHHHHHHHHHHHH-HCEEEEEEEEEECCCTTSBSSSCCCT
T ss_pred             -ecCchhhhhHHHHHHHHHHh-cCeEEEEEeeeeeccchhhhccCCcc
Confidence             55555556565556555432 2232   233363    2 3688874

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}

Probab=97.12  E-value=0.0014  Score=64.54  Aligned_cols=76  Identities=8%  Similarity=0.078  Sum_probs=65.2

Q ss_pred             CCeeecCCHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057           86 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus        86 ~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      .++|+|..+.++.+.   ...+|++|.+.+++.+.+.++.|.+.|+++||=|.||..++..+|.++|+++|+. ++.||-
T Consensus        19 ~~~Pv~~~~~~~~~~---p~~~DlavI~vPa~~v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~r-liGPNc   94 (480)
T 3dmy_A           19 QALTQVRRWDSACQK---LPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLL-VMGPDC   94 (480)
T ss_dssp             -CCEEESSHHHHHHH---STTCCEEEECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCC-EECSSC
T ss_pred             CCCcccchHHHHHhc---CCCCCEEEEecCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCE-EEecCc
Confidence            468999888887652   2468999999999999999999999999988877799987778999999999987 678997

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.09  E-value=0.00098  Score=60.60  Aligned_cols=95  Identities=13%  Similarity=0.111  Sum_probs=58.8

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcC----C-cEEEEEEecCCCCcchhhhhcCCCCCCe--------------eecCC
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKAR----G-MEVAGAIDSHSVGEDIGMVCDMEQPLEI--------------PVMSD   93 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~----~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv--------------~v~~d   93 (303)
                      ++||||+|+|+ |.||..++..+.+.+    + .++.. +++.   .....+..   +.|+              .++++
T Consensus         6 ~~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~~V~~-~~r~---~~~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~   77 (317)
T 2qyt_A            6 QQPIKIAVFGL-GGVGGYYGAMLALRAAATDGLLEVSW-IARG---AHLEAIRA---AGGLRVVTPSRDFLARPTCVTDN   77 (317)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSEEEEE-ECCH---HHHHHHHH---HTSEEEECSSCEEEECCSEEESC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhCccccCCCCCEEE-EEcH---HHHHHHHh---cCCeEEEeCCCCeEEecceEecC
Confidence            34689999998 999999999887651    5 67664 5542   11222210   0122              22345


Q ss_pred             HHHHHhccccCCCccEEEEcCCchhHHHHHHHHHH---cCCCeEEeCCCCCH
Q 022057           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL  142 (303)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~---~g~~vVigTTG~~~  142 (303)
                      .+. +      .++|+||-++.+..+.+.+.....   .+..+|.-++|+..
T Consensus        78 ~~~-~------~~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~  122 (317)
T 2qyt_A           78 PAE-V------GTVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADI  122 (317)
T ss_dssp             HHH-H------CCEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred             ccc-c------CCCCEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence            443 3      479999988887777666654433   34556666778865

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=97.08  E-value=0.004  Score=61.34  Aligned_cols=125  Identities=17%  Similarity=0.090  Sum_probs=70.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecCCC--CcchhhhhcCCC------------------CCCeeecCC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV--GEDIGMVCDMEQ------------------PLEIPVMSD   93 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~--g~d~~~~~g~~~------------------~~gv~v~~d   93 (303)
                      +|||+|+|+ |.||..++..+.+.+++ ++++ +|.+..  ...+..+..-..                  ...+..++|
T Consensus        18 ~mkIaVIGl-G~mG~~lA~~la~~~G~~~V~~-~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd   95 (478)
T 3g79_A           18 IKKIGVLGM-GYVGIPAAVLFADAPCFEKVLG-FQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD   95 (478)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHSTTCCEEEE-ECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCCCCeEEE-EECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc
Confidence            579999997 99999999998876688 8875 675431  002222211000                  122455666


Q ss_pred             HHHHHhccccCCCccEEEEcCC-ch-----------hHH---HHHHHHHHcCCCeEEeCC---CCCHHHHHHHH-HHhhh
Q 022057           94 LTMVLGSISQSKARAVVIDFTD-AS-----------TVY---DNVKQATAFGMRSVVYVP---HIQLETVSALS-AFCDK  154 (303)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDfT~-p~-----------a~~---~~~~~al~~g~~vVigTT---G~~~e~~~~L~-~~a~~  154 (303)
                       .+++      .++|++|.+.+ |.           .+.   +.+...++.|.-+|..+|   |.+++-.+.+. +....
T Consensus        96 -~ea~------~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~  168 (478)
T 3g79_A           96 -FSRI------SELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGL  168 (478)
T ss_dssp             -GGGG------GGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCC
T ss_pred             -HHHH------hcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCC
Confidence             4555      37899987642 21           122   233334456665665555   45544333333 21110


Q ss_pred             ---cCCeEEEcCCCcHH
Q 022057          155 ---ASMGCLIAPTLSIG  168 (303)
Q Consensus       155 ---~~i~vv~a~N~SiG  168 (303)
                         ....++.+|.|.-.
T Consensus       169 ~~~~d~~v~~~Pe~~~~  185 (478)
T 3g79_A          169 KAGEDFALAHAPERVMV  185 (478)
T ss_dssp             CBTTTBEEEECCCCCCT
T ss_pred             CcCCceeEEeCCccCCc
Confidence               12579999987543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.08  E-value=0.00031  Score=57.13  Aligned_cols=85  Identities=11%  Similarity=0.142  Sum_probs=54.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ..||+|+|+ |.||+.+++.+.. .+++ +.++|++.  ..+..++   ..+++  ..++++++++.      ++|+||.
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~-~g~~-v~v~~r~~--~~~~~~a---~~~~~~~~~~~~~~~~~~------~~Divi~   86 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSY-PQYK-VTVAGRNI--DHVRAFA---EKYEYEYVLINDIDSLIK------NNDVIIT   86 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCT-TTCE-EEEEESCH--HHHHHHH---HHHTCEEEECSCHHHHHH------TCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCE-EEEEcCCH--HHHHHHH---HHhCCceEeecCHHHHhc------CCCEEEE
Confidence            468999998 9999999998775 7889 77888752  2222222   12333  34678888884      7999998


Q ss_pred             cCCchhHHHHHHHHHHcCCCeE
Q 022057          113 FTDASTVYDNVKQATAFGMRSV  134 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vV  134 (303)
                      +|+..... .....++.|..++
T Consensus        87 at~~~~~~-~~~~~l~~g~~vi  107 (144)
T 3oj0_A           87 ATSSKTPI-VEERSLMPGKLFI  107 (144)
T ss_dssp             CSCCSSCS-BCGGGCCTTCEEE
T ss_pred             eCCCCCcE-eeHHHcCCCCEEE
Confidence            88543211 1113344565554

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.07  E-value=0.0051  Score=53.57  Aligned_cols=33  Identities=18%  Similarity=0.172  Sum_probs=27.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      |++|.|.|++|.+|+.+++.+.+..+.++++..
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~   55 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFA   55 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEE
Confidence            578999999999999999998865437777654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.05  E-value=0.001  Score=60.10  Aligned_cols=100  Identities=16%  Similarity=0.212  Sum_probs=55.9

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCCC-------CCCeeecCCHHHHHhccccC
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DMEQ-------PLEIPVMSDLTMVLGSISQS  104 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~~-------~~gv~v~~dl~~~l~~~~~~  104 (303)
                      |||||+|+|+ |.||+.++..+.+ .+.+++. +|++.  .....+.  |...       ...+.++ +.+++.+.   -
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~-~g~~V~~-~~r~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~---~   72 (316)
T 2ew2_A            2 NAMKIAIAGA-GAMGSRLGIMLHQ-GGNDVTL-IDQWP--AHIEAIRKNGLIADFNGEEVVANLPIF-SPEEIDHQ---N   72 (316)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHHHHHCEEEEETTEEEEECCCEE-CGGGCCTT---S
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHh-CCCcEEE-EECCH--HHHHHHHhCCEEEEeCCCeeEecceee-cchhhccc---C
Confidence            4679999998 9999999998875 5677664 56531  1111111  1000       0011111 22233210   0


Q ss_pred             CCccEEEEcCCchhHHHHHHHHHH---cCCCeEEeCCCCCH
Q 022057          105 KARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL  142 (303)
Q Consensus       105 ~~~DVvIDfT~p~a~~~~~~~al~---~g~~vVigTTG~~~  142 (303)
                      .++|+||-++.+..+.+.+.....   .+..+|.-++|++.
T Consensus        73 ~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~  113 (316)
T 2ew2_A           73 EQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGH  113 (316)
T ss_dssp             CCCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCT
T ss_pred             CCCCEEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence            278999988888777666665443   34556655568763

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=97.02  E-value=0.002  Score=60.92  Aligned_cols=132  Identities=20%  Similarity=0.201  Sum_probs=76.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhh--hcCC---CCCCeeecC--C
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMV--CDME---QPLEIPVMS--D   93 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~~~~--~g~~---~~~gv~v~~--d   93 (303)
                      |+||+|+|+ ||+||.+++.+.+.+ ++++++-|+..              .|+--+++  .|-.   ....++++.  |
T Consensus         7 ~~kvgInGF-GRIGrlv~R~~~~~~-veivainDp~~d~~~~a~l~~yDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~d   84 (346)
T 3h9e_O            7 ELTVGINGF-GRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVDNHEISVYQCKE   84 (346)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred             eeEEEEECC-ChHHHHHHHHHHhCC-CEEEEEeCCCCChhHhcccccccCCCCCCCCcEEEcCCEEEECCEEEEEEecCC
Confidence            689999998 999999999888665 99999887420              01100000  0000   001233332  3


Q ss_pred             HHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCC-CeEEeCC---------CCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP---------HIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~-~vVigTT---------G~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                      ++++-=   .+.++|+|+++|-.....+.+...++.|. .|||-.|         |.+.+.++.     .+  -.++  +
T Consensus        85 p~~i~W---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsaps~d~plvV~gVN~~~~~~-----~~--~~II--S  152 (346)
T 3h9e_O           85 PKQIPW---RAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNP-----GS--MNIV--S  152 (346)
T ss_dssp             GGGCCG---GGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCCT-----TT--CSEE--E
T ss_pred             hhhCCc---ccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCeeCcccCHHHcCc-----cc--CCEE--E
Confidence            333210   01278999998888888889999999995 4666544         334433211     01  3445  5


Q ss_pred             CCcHHHHHHHHHHHHhc
Q 022057          164 TLSIGSILLQQAAISAS  180 (303)
Q Consensus       164 N~SiGv~ll~~~a~~~~  180 (303)
                      |=|=-.|-|.-+++.+-
T Consensus       153 NasCTTn~Lap~lkvL~  169 (346)
T 3h9e_O          153 NASCTTNCLAPLAKVIH  169 (346)
T ss_dssp             CCCHHHHHHHHHHHHHH
T ss_pred             CCcchhhhHHHHHHHHH
Confidence            55555665555555554

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.01  E-value=0.0019  Score=58.64  Aligned_cols=100  Identities=14%  Similarity=0.113  Sum_probs=59.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---------------cCCC------CCCeeecCC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---------------DMEQ------PLEIPVMSD   93 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---------------g~~~------~~gv~v~~d   93 (303)
                      +.||+|+|+ |.||+.++..+.. .+++++. +|++.  ..+....               ++..      ...+..++|
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~-~G~~V~l-~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~   78 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAF-HGFAVTA-YDINT--DALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDD   78 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSH--HHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCeEEE-EeCCH--HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCC
Confidence            368999998 9999999998874 5888765 67542  1111110               0000      012455788


Q ss_pred             HHHHHhccccCCCccEEEEcCCch--hHHHHHHHHH---HcCCCeEEeCCCCCHHHH
Q 022057           94 LTMVLGSISQSKARAVVIDFTDAS--TVYDNVKQAT---AFGMRSVVYVPHIQLETV  145 (303)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDfT~p~--a~~~~~~~al---~~g~~vVigTTG~~~e~~  145 (303)
                      +++++      .++|+||.+..+.  ...+......   ..+.-++.-|++++.+++
T Consensus        79 ~~~~~------~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~l  129 (283)
T 4e12_A           79 LAQAV------KDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDL  129 (283)
T ss_dssp             HHHHT------TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHH
T ss_pred             HHHHh------ccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence            88877      4799999887654  3344433333   333333334557776543

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.99  E-value=0.0049  Score=59.51  Aligned_cols=69  Identities=19%  Similarity=0.273  Sum_probs=44.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC---------------CCC-eeecCCHHHHHh
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ---------------PLE-IPVMSDLTMVLG   99 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~---------------~~g-v~v~~dl~~~l~   99 (303)
                      |||+|+|+ |.||..++..+.+ .++++++ +|++.  ..+..+..-..               ..+ +..++|+++++.
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~-~G~~V~~-~d~~~--~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~   75 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSA-RGHEVIG-VDVSS--TKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL   75 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhc
Confidence            58999997 9999999998875 5788665 66531  11111110000               022 566788888774


Q ss_pred             ccccCCCccEEEEcCC
Q 022057          100 SISQSKARAVVIDFTD  115 (303)
Q Consensus       100 ~~~~~~~~DVvIDfT~  115 (303)
                            ++|++|.+.+
T Consensus        76 ------~aDvviiaVp   85 (436)
T 1mv8_A           76 ------DSDVSFICVG   85 (436)
T ss_dssp             ------TCSEEEECCC
T ss_pred             ------cCCEEEEEcC
Confidence                  7999998763

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.98  E-value=0.0011  Score=60.72  Aligned_cols=121  Identities=16%  Similarity=0.146  Sum_probs=68.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec--CCCCcchhhhhcCC--CCCC-----eeecC--CHHHHHhccccC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDME--QPLE-----IPVMS--DLTMVLGSISQS  104 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~--~~~g~d~~~~~g~~--~~~g-----v~v~~--dl~~~l~~~~~~  104 (303)
                      |||+|+|+ |.||..++..+.+ .+.++.. +|+  +.  .....+...+  ..++     +.+++  ++++++      
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~-~g~~V~~-~~r~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------   69 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVD-NGNEVRI-WGTEFDT--EILKSISAGREHPRLGVKLNGVEIFWPEQLEKCL------   69 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHH-HCCEEEE-ECCGGGH--HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHH------
T ss_pred             CEEEEECc-CHHHHHHHHHHHh-CCCeEEE-EEccCCH--HHHHHHHHhCcCcccCccccceEEecHHhHHHHH------
Confidence            58999998 9999999998875 4667654 554  31  1122221100  0001     24555  777776      


Q ss_pred             CCccEEEEcCCchhHHHHHHHHH--HcCCCeEEeCCCC---CHHHHHHHHHHhhhc-----CCeEEEcCCCcH
Q 022057          105 KARAVVIDFTDASTVYDNVKQAT--AFGMRSVVYVPHI---QLETVSALSAFCDKA-----SMGCLIAPTLSI  167 (303)
Q Consensus       105 ~~~DVvIDfT~p~a~~~~~~~al--~~g~~vVigTTG~---~~e~~~~L~~~a~~~-----~i~vv~a~N~Si  167 (303)
                      .++|+||-++.+..+.+.+....  ..+..+|.-+.|+   .+...+.+.+...+.     ...+...||+..
T Consensus        70 ~~~D~vi~~v~~~~~~~v~~~i~~l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~  142 (335)
T 1txg_A           70 ENAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAR  142 (335)
T ss_dssp             TTCSEEEECSCGGGHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHH
T ss_pred             hcCCEEEEcCChHHHHHHHHHHhcCCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHH
Confidence            47999998888877776665443  2334344433377   321112233333221     145677788753

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.94  E-value=0.0021  Score=55.83  Aligned_cols=73  Identities=19%  Similarity=0.149  Sum_probs=50.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ++||+|+|+ |.||+.++..+.+ .+.++.. +|++.             +           .+      .++|+||-+.
T Consensus        19 ~~~I~iiG~-G~mG~~la~~l~~-~g~~V~~-~~~~~-------------~-----------~~------~~aD~vi~av   65 (209)
T 2raf_A           19 GMEITIFGK-GNMGQAIGHNFEI-AGHEVTY-YGSKD-------------Q-----------AT------TLGEIVIMAV   65 (209)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECTTC-------------C-----------CS------SCCSEEEECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEEE-EcCCH-------------H-----------Hh------ccCCEEEEcC
Confidence            579999997 9999999998874 5677664 55532             0           11      4789999888


Q ss_pred             CchhHHHHHHH---HHHcCCCeEEeCCCCC
Q 022057          115 DASTVYDNVKQ---ATAFGMRSVVYVPHIQ  141 (303)
Q Consensus       115 ~p~a~~~~~~~---al~~g~~vVigTTG~~  141 (303)
                      .+....+.+..   .++ +..+|.-++|++
T Consensus        66 ~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           66 PYPALAALAKQYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             CHHHHHHHHHHTHHHHT-TSEEEECCCCBC
T ss_pred             CcHHHHHHHHHHHHhcC-CCEEEEECCCCC
Confidence            77766665543   344 665665566775

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.93  E-value=0.011  Score=52.90  Aligned_cols=90  Identities=12%  Similarity=0.062  Sum_probs=54.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----cCC---HHHHHhccccCCCc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKAR  107 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~~d---l~~~l~~~~~~~~~  107 (303)
                      +++|.|.|++|.+|+.+++.+.+..+.++++...... ......+.    ..++.+    ..|   +++++      .++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~-~~~~~~l~----~~~~~~~~~D~~d~~~l~~~~------~~~   73 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPR-KKAAKELR----LQGAEVVQGDQDDQVIMELAL------NGA   73 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTT-SHHHHHHH----HTTCEEEECCTTCHHHHHHHH------TTC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCC-CHHHHHHH----HCCCEEEEecCCCHHHHHHHH------hcC
Confidence            4789999999999999999998764488887553221 11111111    112221    123   44455      479


Q ss_pred             cEEEEcCCch----------hHHHHHHHHHHcCCC-eEE
Q 022057          108 AVVIDFTDAS----------TVYDNVKQATAFGMR-SVV  135 (303)
Q Consensus       108 DVvIDfT~p~----------a~~~~~~~al~~g~~-vVi  135 (303)
                      |+||.++.+.          .....++.|.+.|+. +|.
T Consensus        74 d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~  112 (299)
T 2wm3_A           74 YATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVY  112 (299)
T ss_dssp             SEEEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CEEEEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEE
Confidence            9999876421          234556677778864 444

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.93  E-value=0.003  Score=57.10  Aligned_cols=89  Identities=15%  Similarity=0.179  Sum_probs=55.2

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ||+||.|.|++|.+|+.+++.+.+ .+.++++......  .. . +.+.. -..++. .+++++++      .++|+||.
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~--~~-~-~~~~~~~~~Dl~-~~~~~~~~------~~~d~Vih   68 (311)
T 3m2p_A            1 MSLKIAVTGGTGFLGQYVVESIKN-DGNTPIILTRSIG--NK-A-INDYEYRVSDYT-LEDLINQL------NDVDAVVH   68 (311)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCCC---------CCEEEECCCC-HHHHHHHT------TTCSEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHh-CCCEEEEEeCCCC--cc-c-CCceEEEEcccc-HHHHHHhh------cCCCEEEE
Confidence            678999999999999999999886 4778887554311  11 1 11100 011222 33455555      47999998


Q ss_pred             cCCc--------------hhHHHHHHHHHHcCCC-eE
Q 022057          113 FTDA--------------STVYDNVKQATAFGMR-SV  134 (303)
Q Consensus       113 fT~p--------------~a~~~~~~~al~~g~~-vV  134 (303)
                      +..+              ......++.|.+.|+. +|
T Consensus        69 ~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v  105 (311)
T 3m2p_A           69 LAATRGSQGKISEFHDNEILTQNLYDACYENNISNIV  105 (311)
T ss_dssp             CCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            7632              1335667788888877 44

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.92  E-value=0.0056  Score=56.63  Aligned_cols=34  Identities=26%  Similarity=0.191  Sum_probs=30.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      |+||.|.|++|.+|+.+++.+.+.++.++++...
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r   57 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDM   57 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEES
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeC
Confidence            5799999999999999999999877899887653

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.92  E-value=0.012  Score=57.32  Aligned_cols=70  Identities=13%  Similarity=0.140  Sum_probs=45.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhh---------------hhcCCCCCCeeecCCHHHHH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGM---------------VCDMEQPLEIPVMSDLTMVL   98 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~---------------~~g~~~~~gv~v~~dl~~~l   98 (303)
                      ||||+|+|+ |.||..++..+.+. +++++++ +|++.  ..+..               +.......++..++|+++++
T Consensus         5 ~mkI~VIG~-G~mG~~lA~~La~~g~G~~V~~-~d~~~--~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~   80 (467)
T 2q3e_A            5 IKKICCIGA-GYVGGPTCSVIAHMCPEIRVTV-VDVNE--SRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAI   80 (467)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHCTTSEEEE-ECSCH--HHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHH
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCCCCEEEE-EECCH--HHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHH
Confidence            579999997 99999999988865 3788765 66531  11111               11000013466678888877


Q ss_pred             hccccCCCccEEEEcC
Q 022057           99 GSISQSKARAVVIDFT  114 (303)
Q Consensus        99 ~~~~~~~~~DVvIDfT  114 (303)
                      +      ++|+||-+.
T Consensus        81 ~------~aDvViiaV   90 (467)
T 2q3e_A           81 K------EADLVFISV   90 (467)
T ss_dssp             H------HCSEEEECC
T ss_pred             h------cCCEEEEEc
Confidence            4      689999774

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.88  E-value=0.0017  Score=59.53  Aligned_cols=115  Identities=13%  Similarity=0.143  Sum_probs=69.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--cCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ..+|+|+|+ |+||+.+++.+.. -++++. ++|+..  .....+.    +.++..  +.++++++      .++|+||.
T Consensus       157 g~~v~IiG~-G~iG~~~a~~l~~-~G~~V~-~~d~~~--~~~~~~~----~~g~~~~~~~~l~~~l------~~aDvVi~  221 (300)
T 2rir_A          157 GSQVAVLGL-GRTGMTIARTFAA-LGANVK-VGARSS--AHLARIT----EMGLVPFHTDELKEHV------KDIDICIN  221 (300)
T ss_dssp             TSEEEEECC-SHHHHHHHHHHHH-TTCEEE-EEESSH--HHHHHHH----HTTCEEEEGGGHHHHS------TTCSEEEE
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH----HCCCeEEchhhHHHHh------hCCCEEEE
Confidence            468999998 9999999998874 577766 467642  1112111    123332  46788877      47999998


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      .+++....+.....++.|. +++-+. |-..-+   + +.+++.|+.++..||.+-++
T Consensus       222 ~~p~~~i~~~~~~~mk~g~-~lin~a~g~~~~~---~-~~a~~~G~~~i~~pg~~g~v  274 (300)
T 2rir_A          222 TIPSMILNQTVLSSMTPKT-LILDLASRPGGTD---F-KYAEKQGIKALLAPGLPGIV  274 (300)
T ss_dssp             CCSSCCBCHHHHTTSCTTC-EEEECSSTTCSBC---H-HHHHHHTCEEEECCCHHHHH
T ss_pred             CCChhhhCHHHHHhCCCCC-EEEEEeCCCCCcC---H-HHHHHCCCEEEECCCCCCcH
Confidence            8876443222222233343 333332 311111   2 45666788888899988776

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.86  E-value=0.012  Score=57.76  Aligned_cols=123  Identities=11%  Similarity=0.126  Sum_probs=69.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---------cCC-------CCCCeeecCCHHHHH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---------DME-------QPLEIPVMSDLTMVL   98 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---------g~~-------~~~gv~v~~dl~~~l   98 (303)
                      .|||+|+|+ |.||..++..+.+ .++++++ +|.+.  ..+..+.         |+.       ....+..++|+++++
T Consensus         8 ~~~I~VIG~-G~vG~~lA~~la~-~G~~V~~-~d~~~--~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~   82 (478)
T 2y0c_A            8 SMNLTIIGS-GSVGLVTGACLAD-IGHDVFC-LDVDQ--AKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAV   82 (478)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHH
T ss_pred             CceEEEECc-CHHHHHHHHHHHh-CCCEEEE-EECCH--HHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHh
Confidence            479999997 9999999998874 5788665 56431  1111111         000       011356678888777


Q ss_pred             hccccCCCccEEEEcCC-c---------hhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhh--------cCC
Q 022057           99 GSISQSKARAVVIDFTD-A---------STVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDK--------ASM  157 (303)
Q Consensus        99 ~~~~~~~~~DVvIDfT~-p---------~a~~~~~~~al~---~g~~vVigTTG~~~e~~~~L~~~a~~--------~~i  157 (303)
                      .      ++|++|.+.+ |         ..+.+.++...+   .+.-+|. +++......+++.+..++        ...
T Consensus        83 ~------~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~-~STv~~gt~~~l~~~l~~~~~~g~~~~~~  155 (478)
T 2y0c_A           83 A------HGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVD-KSTVPVGTAERVRAAVAEELAKRGGDQMF  155 (478)
T ss_dssp             H------HCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHHHHTTCCCCE
T ss_pred             h------cCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEE-eCCcCCCchHHHHHHHHHHhcCCCCCccE
Confidence            4      6899997753 3         555555554433   3444444 444333222223222221        235


Q ss_pred             eEEEcCCCcHHH
Q 022057          158 GCLIAPTLSIGS  169 (303)
Q Consensus       158 ~vv~a~N~SiGv  169 (303)
                      +++++|.|.--.
T Consensus       156 ~v~~~Pe~~~eG  167 (478)
T 2y0c_A          156 SVVSNPEFLKEG  167 (478)
T ss_dssp             EEEECCCCCCTT
T ss_pred             EEEEChhhhccc
Confidence            788888876433

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.86  E-value=0.0024  Score=54.78  Aligned_cols=32  Identities=13%  Similarity=0.390  Sum_probs=27.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      |||.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus         1 M~ilItGatG~iG~~l~~~L~~-~g~~V~~~~R   32 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLST-TDYQIYAGAR   32 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTT-SSCEEEEEES
T ss_pred             CeEEEECCCCHHHHHHHHHHHH-CCCEEEEEEC
Confidence            4899999999999999999885 5788887653

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=96.85  E-value=0.0021  Score=63.51  Aligned_cols=155  Identities=12%  Similarity=0.074  Sum_probs=88.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhc-----CCcEEEEEEecCCCCcchhhhhcCCCCCCeee----cCCHHHHHhccccCCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKA-----RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDLTMVLGSISQSKA  106 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~-----~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~~dl~~~l~~~~~~~~  106 (303)
                      .||+|+|+ |.||..+++.+.+.     .+++++...++..  .. .+.+   ...|+.+    ..++++++.      .
T Consensus        55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~s--ks-~e~A---~e~G~~v~d~ta~s~aEAa~------~  121 (525)
T 3fr7_A           55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGS--KS-FDEA---RAAGFTEESGTLGDIWETVS------G  121 (525)
T ss_dssp             SEEEEECC-TTHHHHHHHHHHHHHHHTTCCCEEEEEECTTC--SC-HHHH---HHTTCCTTTTCEEEHHHHHH------H
T ss_pred             CEEEEEeE-hHHHHHHHHHHHhcccccCCCCEEEEEeCCch--hh-HHHH---HHCCCEEecCCCCCHHHHHh------c
Confidence            69999998 99999999998864     3788776555432  11 1111   1244443    257888884      7


Q ss_pred             ccEEEEcCCchhHHHHHHHHH---HcCCCeEEeCCCCCHHHHHH-HHHHhhhcCCeEE-EcCCCcHHHHHHHHHHHHhc-
Q 022057          107 RAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSA-LSAFCDKASMGCL-IAPTLSIGSILLQQAAISAS-  180 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~~~al---~~g~~vVigTTG~~~e~~~~-L~~~a~~~~i~vv-~a~N~SiGv~ll~~~a~~~~-  180 (303)
                      +|+||-..+|....+.+...+   +.|. +|+=..|++-..+++ ...+-+  +++++ +.||..--+  +.+.-..-. 
T Consensus       122 ADVVILaVP~~~~~eVl~eI~p~LK~Ga-ILs~AaGf~I~~le~~~i~~p~--dv~VVrVmPNtPg~~--VR~~y~~G~~  196 (525)
T 3fr7_A          122 SDLVLLLISDAAQADNYEKIFSHMKPNS-ILGLSHGFLLGHLQSAGLDFPK--NISVIAVCPKGMGPS--VRRLYVQGKE  196 (525)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHSCTTC-EEEESSSHHHHHHHHTTCCCCT--TSEEEEEEESSCHHH--HHHHHHHHTT
T ss_pred             CCEEEECCChHHHHHHHHHHHHhcCCCC-eEEEeCCCCHHHHhhhcccCCC--CCcEEEEecCCCchh--HHHHHhcccc
Confidence            999998888876655554433   3343 455567987544332 111222  35555 788987554  333332220 


Q ss_pred             cCCCcEE-EEEccCCCCCCCcHHHHHHHHHHHh
Q 022057          181 FHYKNVE-IVESRPNARDFPSPDATQIANNLSN  212 (303)
Q Consensus       181 ~~~~die-IiE~Hh~K~DaPSGTA~~l~~~i~~  212 (303)
                      -.+.-+- .+-.|.   | +||.|+.++..+.+
T Consensus       197 ~~g~Gv~~liAv~q---d-~tgea~e~alala~  225 (525)
T 3fr7_A          197 INGAGINSSFAVHQ---D-VDGRATDVALGWSV  225 (525)
T ss_dssp             STTCSCCEEEEEEE---C-SSSCHHHHHHHHHH
T ss_pred             cccCCccEEEEcCC---C-CCHHHHHHHHHHHH
Confidence            0011111 222222   2 67778877777765

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.79  E-value=0.0048  Score=55.90  Aligned_cols=130  Identities=14%  Similarity=0.135  Sum_probs=74.6

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCCCCCCeee----cCC---HHHHHhccccC
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQS  104 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~~g~~~~~gv~v----~~d---l~~~l~~~~~~  104 (303)
                      .||.+|.|.|++|.+|+.+++.+.+. +.++.+...... ......++.    ..++.+    ..|   +.+++      
T Consensus         9 ~m~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~~l~----~~~v~~v~~Dl~d~~~l~~a~------   77 (318)
T 2r6j_A            9 GMKSKILIFGGTGYIGNHMVKGSLKL-GHPTYVFTRPNSSKTTLLDEFQ----SLGAIIVKGELDEHEKLVELM------   77 (318)
T ss_dssp             CCCCCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECTTCSCHHHHHHHH----HTTCEEEECCTTCHHHHHHHH------
T ss_pred             CCCCeEEEECCCchHHHHHHHHHHHC-CCcEEEEECCCCchhhHHHHhh----cCCCEEEEecCCCHHHHHHHH------
Confidence            35568999999999999999998864 678776543221 000011111    112222    123   44455      


Q ss_pred             CCccEEEEcCCc---hhHHHHHHHHHHcC-CCeEEeCC-CCC--------H-----HHHHHHHHHhhhcCCeEE-EcCCC
Q 022057          105 KARAVVIDFTDA---STVYDNVKQATAFG-MRSVVYVP-HIQ--------L-----ETVSALSAFCDKASMGCL-IAPTL  165 (303)
Q Consensus       105 ~~~DVvIDfT~p---~a~~~~~~~al~~g-~~vVigTT-G~~--------~-----e~~~~L~~~a~~~~i~vv-~a~N~  165 (303)
                      .++|+||.++.+   ......+..|.++| +.-++-++ |.+        +     .....++++.++.++++. +.||+
T Consensus        78 ~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~~~~~lr~~~  157 (318)
T 2r6j_A           78 KKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERKRMIRRAIEEANIPYTYVSANC  157 (318)
T ss_dssp             TTCSEEEECCCGGGSTTHHHHHHHHHHHCCCCEEECSCCSSCTTTCCCCHHHHHHHHHHHHHHHHHHHTTCCBEEEECCE
T ss_pred             cCCCEEEECCchhhhHHHHHHHHHHHhcCCCCEEEeeccccCcccccCCCCcchhHHHHHHHHHHHHhcCCCeEEEEcce
Confidence            479999988754   34577778888888 65555332 421        1     112346666777776643 45665


Q ss_pred             cHHHHHHHH
Q 022057          166 SIGSILLQQ  174 (303)
Q Consensus       166 SiGv~ll~~  174 (303)
                      =.+ +++..
T Consensus       158 ~~~-~~~~~  165 (318)
T 2r6j_A          158 FAS-YFINY  165 (318)
T ss_dssp             EHH-HHHHH
T ss_pred             ehh-hhhhh
Confidence            333 44433

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=96.77  E-value=0.0014  Score=58.34  Aligned_cols=81  Identities=16%  Similarity=0.195  Sum_probs=51.3

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |+|||.|.|++|.+|+.+++.+.+ .+.++++.. +..  -|            +.-.++++++++.    .++|+||.+
T Consensus         4 M~m~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~-r~~--~D------------~~d~~~~~~~~~~----~~~d~vi~~   63 (287)
T 3sc6_A            4 MKERVIITGANGQLGKQLQEELNP-EEYDIYPFD-KKL--LD------------ITNISQVQQVVQE----IRPHIIIHC   63 (287)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHSCT-TTEEEEEEC-TTT--SC------------TTCHHHHHHHHHH----HCCSEEEEC
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHh-CCCEEEEec-ccc--cC------------CCCHHHHHHHHHh----cCCCEEEEC
Confidence            557999999999999999998875 478887743 321  11            1112345556642    269999987


Q ss_pred             CCchh------------------HHHHHHHHHHcCCCeE
Q 022057          114 TDAST------------------VYDNVKQATAFGMRSV  134 (303)
Q Consensus       114 T~p~a------------------~~~~~~~al~~g~~vV  134 (303)
                      .....                  ....++.|.++|..+|
T Consensus        64 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v  102 (287)
T 3sc6_A           64 AAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLV  102 (287)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEE
T ss_pred             CcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence            53211                  2345566666676655

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=96.73  E-value=0.0017  Score=59.99  Aligned_cols=87  Identities=14%  Similarity=0.066  Sum_probs=58.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      .++|+|+|+ |.||+.+++.+.+..+++-+.++|++.  ..+..+..   .++  +..+++++++++      ++|+||-
T Consensus       135 ~~~igiIG~-G~~g~~~a~~l~~~~g~~~V~v~dr~~--~~~~~l~~---~~~~~~~~~~~~~e~v~------~aDiVi~  202 (312)
T 2i99_A          135 SEVLCILGA-GVQAYSHYEIFTEQFSFKEVRIWNRTK--ENAEKFAD---TVQGEVRVCSSVQEAVA------GADVIIT  202 (312)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCCCSEEEEECSSH--HHHHHHHH---HSSSCCEECSSHHHHHT------TCSEEEE
T ss_pred             CcEEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCH--HHHHHHHH---HhhCCeEEeCCHHHHHh------cCCEEEE
Confidence            468999998 999999999988765675667788652  22233331   233  667789999884      7999997


Q ss_pred             cCCchhHHHHHH-HHHHcCCCeEE
Q 022057          113 FTDASTVYDNVK-QATAFGMRSVV  135 (303)
Q Consensus       113 fT~p~a~~~~~~-~al~~g~~vVi  135 (303)
                      +|+ . ..+.+. ..++.|.+++.
T Consensus       203 atp-~-~~~v~~~~~l~~g~~vi~  224 (312)
T 2i99_A          203 VTL-A-TEPILFGEWVKPGAHINA  224 (312)
T ss_dssp             CCC-C-SSCCBCGGGSCTTCEEEE
T ss_pred             EeC-C-CCcccCHHHcCCCcEEEe
Confidence            764 2 122222 35667777765

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=96.72  E-value=0.016  Score=55.43  Aligned_cols=115  Identities=14%  Similarity=0.169  Sum_probs=65.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC--------------CCCeeecCCHHHHHhcc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ--------------PLEIPVMSDLTMVLGSI  101 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~--------------~~gv~v~~dl~~~l~~~  101 (303)
                      |||+|+|+ |.||..++..+.+  ++++++ +|++.  ..+..+...+.              ...+..++|+++.+.  
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~--G~~V~~-~d~~~--~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~--   72 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL--QNEVTI-VDILP--SKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK--   72 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT--TSEEEE-ECSCH--HHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH--
T ss_pred             CEEEEECC-CHHHHHHHHHHhC--CCEEEE-EECCH--HHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc--
Confidence            58999998 9999999998875  788765 56531  11111110000              112355677877764  


Q ss_pred             ccCCCccEEEEcCCch-----------hHHHHHHHH--HHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057          102 SQSKARAVVIDFTDAS-----------TVYDNVKQA--TAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus       102 ~~~~~~DVvIDfT~p~-----------a~~~~~~~a--l~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                          ++|++|-+..+.           .+.+.++..  ++.+.-+|..+| +...  .+++.+...+.  +++++|.|.
T Consensus        73 ----~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST~~~g~--~~~l~~~~~~~--~v~~~Pe~~  143 (402)
T 1dlj_A           73 ----EAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGF--ITEMRQKFQTD--RIIFSPEFL  143 (402)
T ss_dssp             ----HCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTH--HHHHHHHTTCS--CEEECCCCC
T ss_pred             ----CCCEEEEecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCCCCccH--HHHHHHHhCCC--eEEECCccc
Confidence                689999876543           344444433  334444554334 4432  23454444432  677777653

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.72  E-value=0.012  Score=49.93  Aligned_cols=32  Identities=28%  Similarity=0.399  Sum_probs=27.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      |||.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~-~g~~V~~~~R   32 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKN-RGHEVTAIVR   32 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CeEEEEcCCchhHHHHHHHHHh-CCCEEEEEEc
Confidence            5899999999999999999885 4788887553

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.67  E-value=0.0046  Score=57.80  Aligned_cols=91  Identities=18%  Similarity=0.156  Sum_probs=59.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ++||+|+|+ |.||+.++..+.. .+++++ +++++.  ....+.+   ...|+.++ ++++++.      ++|+||-++
T Consensus        16 ~~~I~IIG~-G~mG~alA~~L~~-~G~~V~-~~~~~~--~~~~~~a---~~~G~~~~-~~~e~~~------~aDvVilav   80 (338)
T 1np3_A           16 GKKVAIIGY-GSQGHAHACNLKD-SGVDVT-VGLRSG--SATVAKA---EAHGLKVA-DVKTAVA------AADVVMILT   80 (338)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHH-TTCCEE-EECCTT--CHHHHHH---HHTTCEEE-CHHHHHH------TCSEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHH-CcCEEE-EEECCh--HHHHHHH---HHCCCEEc-cHHHHHh------cCCEEEEeC
Confidence            468999998 9999999998875 467765 455532  1111122   13455555 8888874      799999888


Q ss_pred             CchhHHHHHH-HHH---HcCCCeEEeCCCCC
Q 022057          115 DASTVYDNVK-QAT---AFGMRSVVYVPHIQ  141 (303)
Q Consensus       115 ~p~a~~~~~~-~al---~~g~~vVigTTG~~  141 (303)
                      ++....+.+. ...   +.|. +|+-..|++
T Consensus        81 p~~~~~~v~~~~i~~~l~~~~-ivi~~~gv~  110 (338)
T 1np3_A           81 PDEFQGRLYKEEIEPNLKKGA-TLAFAHGFS  110 (338)
T ss_dssp             CHHHHHHHHHHHTGGGCCTTC-EEEESCCHH
T ss_pred             CcHHHHHHHHHHHHhhCCCCC-EEEEcCCch
Confidence            8888776666 332   2344 444445643

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.64  E-value=0.0097  Score=47.60  Aligned_cols=125  Identities=11%  Similarity=0.135  Sum_probs=69.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-c---CCHHHHHhccccCCCccEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVv  110 (303)
                      |.+|.|+|+ |++|+.+++.+.+ .+.+++. +|.+.  .....+.    +.++.+ .   .+.+.+.+.  ...++|++
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~-~g~~V~~-id~~~--~~~~~~~----~~~~~~~~gd~~~~~~l~~~--~~~~~d~v   74 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTA-AGKKVLA-VDKSK--EKIELLE----DEGFDAVIADPTDESFYRSL--DLEGVSAV   74 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHH-TTCCEEE-EESCH--HHHHHHH----HTTCEEEECCTTCHHHHHHS--CCTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCeEEE-EECCH--HHHHHHH----HCCCcEEECCCCCHHHHHhC--CcccCCEE
Confidence            568999998 9999999998885 4777775 56532  1122221    122222 1   232222210  11468999


Q ss_pred             EEcCCchhH-HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH
Q 022057          111 IDFTDASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (303)
Q Consensus       111 IDfT~p~a~-~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~  175 (303)
                      |..+..+.. ...+..+.+.+...|+... -+++..+.+    ++.|+..++.|....|-.+...+
T Consensus        75 i~~~~~~~~n~~~~~~a~~~~~~~iia~~-~~~~~~~~l----~~~G~~~vi~p~~~~~~~l~~~i  135 (141)
T 3llv_A           75 LITGSDDEFNLKILKALRSVSDVYAIVRV-SSPKKKEEF----EEAGANLVVLVADAVKQAFMDKI  135 (141)
T ss_dssp             EECCSCHHHHHHHHHHHHHHCCCCEEEEE-SCGGGHHHH----HHTTCSEEEEHHHHHHHHHHHHH
T ss_pred             EEecCCHHHHHHHHHHHHHhCCceEEEEE-cChhHHHHH----HHcCCCEEECHHHHHHHHHHHHH
Confidence            877754333 3444555555544444332 222333334    34567778888877776655544

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=96.62  E-value=0.042  Score=49.99  Aligned_cols=33  Identities=12%  Similarity=0.217  Sum_probs=27.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~v   67 (303)
                      ++||.|.|++|.+|+.+++.+.+. .++++++.-
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~   57 (346)
T 4egb_A           24 AMNILVTGGAGFIGSNFVHYMLQSYETYKIINFD   57 (346)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             CCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEe
Confidence            589999999999999999998865 347777643

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.61  E-value=0.0067  Score=50.76  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=26.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      +||.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~-~g~~V~~~~   34 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQ-AGYEVTVLV   34 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHH-CCCeEEEEE
Confidence            6899999999999999999886 478888754

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.60  E-value=0.0045  Score=55.45  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=25.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      .||.|+|+ |++|..+++.+.. .++.=+.++|.+
T Consensus        32 ~~VlVvG~-Gg~G~~va~~La~-~Gv~~i~lvD~d   64 (249)
T 1jw9_B           32 SRVLIVGL-GGLGCAASQYLAS-AGVGNLTLLDFD   64 (249)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-HTCSEEEEECCC
T ss_pred             CeEEEEee-CHHHHHHHHHHHH-cCCCeEEEEcCC
Confidence            68999998 9999999998875 465334467754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.56  E-value=0.0096  Score=50.75  Aligned_cols=31  Identities=29%  Similarity=0.463  Sum_probs=27.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      |||.|.|++|.+|+.+++.+.+. +.++++..
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~-g~~V~~~~   31 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRR-GHEVLAVV   31 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHC-CCEEEEEE
Confidence            58999999999999999998864 78888764

>3cin_A MYO-inositol-1-phosphate synthase-related protein; structura genomics, joint center for structural genomics, JCSG; HET: NAD; 1.70A {Thermotoga maritima MSB8}

Probab=96.53  E-value=0.011  Score=56.86  Aligned_cols=142  Identities=12%  Similarity=0.162  Sum_probs=84.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc--------------------CCcEEEEEEec--CCCCcchhhhhcC-----C----
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA--------------------RGMEVAGAIDS--HSVGEDIGMVCDM-----E----   83 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~--------------------~~~eLvg~vd~--~~~g~d~~~~~g~-----~----   83 (303)
                      ||||+|+|. |..++.+++-+...                    +|.++++++|.  .+.|+++.+.+-.     .    
T Consensus        13 mIrVaIvGv-GnvASTlvqGv~~~r~g~~~~~G~p~~~~~p~~~~Di~vvgg~DId~~kvgk~l~eAi~~~~n~~~~~~~   91 (394)
T 3cin_A           13 MVKVLILGQ-GYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSLTS   91 (394)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEECBTTTTTSBHHHHHHHHCTTCCCCSS
T ss_pred             eeEEEEecC-CHHHHHHHHHHHHHHcCCCCCccccccccCCCCCCCcEEEEEecCCcchhHHHHHHHHhhchhccccccC
Confidence            899999998 99999998876421                    35689999994  3456666443200     0    


Q ss_pred             -CC----------C-------Ceeec----CCHHHHHhccccCCCccEEEEcCCch------------------------
Q 022057           84 -QP----------L-------EIPVM----SDLTMVLGSISQSKARAVVIDFTDAS------------------------  117 (303)
Q Consensus        84 -~~----------~-------gv~v~----~dl~~~l~~~~~~~~~DVvIDfT~p~------------------------  117 (303)
                       ..          .       +..-.    .+.+++.++ +++.+.||+|...+.|                        
T Consensus        92 ~p~~~~~v~~~~~~~~~~~~~~~~~~~~~~e~i~~~~k~-~~~~~~~Vvvn~asTE~ylpvgs~~~~~~a~~~~~~~~i~  170 (394)
T 3cin_A           92 DPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKE-WTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKERLT  170 (394)
T ss_dssp             CCBCEECCCTTTTTTSSCCBCCGGGSSCHHHHHHHHHHH-HHHHCCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTTTCC
T ss_pred             ccccccCcccccccCcCccccchhhhhhHHHhHHHHHHH-hhhccceeEeeecccccCCCCCCHHHHHHHhhccccccCC
Confidence             00          0       00000    112222211 1124678999843211                        


Q ss_pred             hHHHHHHHHH-----HcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHH-HHHHhc
Q 022057          118 TVYDNVKQAT-----AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQ-AAISAS  180 (303)
Q Consensus       118 a~~~~~~~al-----~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~-~a~~~~  180 (303)
                      +..-++..|+     +.|++.|-++|-+... ...+.++++++|+| +..--|-.|..+|.. ++..+.
T Consensus       171 as~~YA~AAl~~aa~~aG~~fvN~~P~~ia~-~P~~~ela~~~gvp-i~GdD~ktG~T~~k~~L~~~l~  237 (394)
T 3cin_A          171 ATQVYAYAAALYANKRGGAAFVNVIPTFIAN-DPAFVELAKENNLV-VFGDDGATGATPFTADVLSHLA  237 (394)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEECSSSCSTT-CHHHHHHHHHTTEE-EECSSBSCSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhhhhcCCceecCCCccccC-cHHHHHHHHHcCCc-EecccccccchhHHHHHHHHHH
Confidence            1122333444     8999999999966532 24578889999998 456668999987754 344443

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.53  E-value=0.004  Score=56.88  Aligned_cols=115  Identities=17%  Similarity=0.167  Sum_probs=69.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--cCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ..+|+|+|+ |+||+.+++.+.. -++++. ++|+..  .....+.    +.|+..  +.++++++      ..+|+||.
T Consensus       155 g~~v~IiG~-G~iG~~~a~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~l~~~l------~~aDvVi~  219 (293)
T 3d4o_A          155 GANVAVLGL-GRVGMSVARKFAA-LGAKVK-VGARES--DLLARIA----EMGMEPFHISKAAQEL------RDVDVCIN  219 (293)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EEESSH--HHHHHHH----HTTSEEEEGGGHHHHT------TTCSEEEE
T ss_pred             CCEEEEEee-CHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHH----HCCCeecChhhHHHHh------cCCCEEEE
Confidence            468999997 9999999998874 577765 467542  1111111    233333  35778877      47999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      .+++....+.....++.|. +++=+. |-..-+   + +.+++.|+.++..||+.-.+
T Consensus       220 ~~p~~~i~~~~l~~mk~~~-~lin~ar~~~~~~---~-~~a~~~Gv~~~~~~~l~~~v  272 (293)
T 3d4o_A          220 TIPALVVTANVLAEMPSHT-FVIDLASKPGGTD---F-RYAEKRGIKALLVPGLPGIV  272 (293)
T ss_dssp             CCSSCCBCHHHHHHSCTTC-EEEECSSTTCSBC---H-HHHHHHTCEEEECCCHHHHH
T ss_pred             CCChHHhCHHHHHhcCCCC-EEEEecCCCCCCC---H-HHHHHCCCEEEECCCCCccc
Confidence            8865443222223344443 333332 221111   2 44566788888889987776

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.48  E-value=0.023  Score=44.74  Aligned_cols=126  Identities=17%  Similarity=0.177  Sum_probs=70.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-ec---CCHHHHHhccccCCCccEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VM---SDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~---~dl~~~l~~~~~~~~~DVv  110 (303)
                      |.+|+|+|+ |.+|+.+++.+.+ .+.+++ ++|++.  .....+.    ..+.. +.   .+.+.+.+.  ...++|++
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~-~g~~v~-~~d~~~--~~~~~~~----~~~~~~~~~d~~~~~~l~~~--~~~~~d~v   74 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHR-MGHEVL-AVDINE--EKVNAYA----SYATHAVIANATEENELLSL--GIRNFEYV   74 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHH-TTCCCE-EEESCH--HHHHTTT----TTCSEEEECCTTCHHHHHTT--TGGGCSEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HhCCEEEEeCCCCHHHHHhc--CCCCCCEE
Confidence            457999998 9999999998875 466765 456531  1111111    12222 21   233332210  01368999


Q ss_pred             EEcCCc--hhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHH
Q 022057          111 IDFTDA--STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (303)
Q Consensus       111 IDfT~p--~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a  176 (303)
                      |.++..  +........+.+.+.+-++-.. -+....+.++    +.|+..++.|....+-.+...+.
T Consensus        75 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~~-~~~~~~~~l~----~~g~~~vi~p~~~~~~~l~~~~~  137 (144)
T 2hmt_A           75 IVAIGANIQASTLTTLLLKELDIPNIWVKA-QNYYHHKVLE----KIGADRIIHPEKDMGVKIAQSLS  137 (144)
T ss_dssp             EECCCSCHHHHHHHHHHHHHTTCSEEEEEC-CSHHHHHHHH----HHTCSEEECHHHHHHHHHHHHHH
T ss_pred             EECCCCchHHHHHHHHHHHHcCCCeEEEEe-CCHHHHHHHH----HcCCCEEECccHHHHHHHHHHHh
Confidence            988764  3334555667777776555332 2233323333    35677788888777766655554

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.46  E-value=0.011  Score=53.70  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=27.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      +|||.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r   45 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRA-AGHDLVLIHR   45 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEec
Confidence            46999999999999999999886 5788887543

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.45  E-value=0.0063  Score=55.08  Aligned_cols=128  Identities=15%  Similarity=0.132  Sum_probs=71.6

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCc---chhhhhcCCCCCCeee----cC---CHHHHHhccc
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE---DIGMVCDMEQPLEIPV----MS---DLTMVLGSIS  102 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~---d~~~~~g~~~~~gv~v----~~---dl~~~l~~~~  102 (303)
                      .||++|.|.|++|.+|+.+++.+.+ .+.++.+.......+.   ....+..+ ...++.+    ..   ++.+++    
T Consensus         2 ~~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~~~~~~l~~~-~~~~v~~v~~D~~d~~~l~~a~----   75 (321)
T 3c1o_A            2 SHMEKIIIYGGTGYIGKFMVRASLS-FSHPTFIYARPLTPDSTPSSVQLREEF-RSMGVTIIEGEMEEHEKMVSVL----   75 (321)
T ss_dssp             --CCCEEEETTTSTTHHHHHHHHHH-TTCCEEEEECCCCTTCCHHHHHHHHHH-HHTTCEEEECCTTCHHHHHHHH----
T ss_pred             CcccEEEEEcCCchhHHHHHHHHHh-CCCcEEEEECCcccccChHHHHHHHHh-hcCCcEEEEecCCCHHHHHHHH----
Confidence            3578999999999999999999886 4678776543220110   11100000 0112222    22   344455    


Q ss_pred             cCCCccEEEEcCCc---hhHHHHHHHHHHcC-CCeEEeCC-CCC--------H-----HHHHHHHHHhhhcCCeEE-EcC
Q 022057          103 QSKARAVVIDFTDA---STVYDNVKQATAFG-MRSVVYVP-HIQ--------L-----ETVSALSAFCDKASMGCL-IAP  163 (303)
Q Consensus       103 ~~~~~DVvIDfT~p---~a~~~~~~~al~~g-~~vVigTT-G~~--------~-----e~~~~L~~~a~~~~i~vv-~a~  163 (303)
                        .++|+||.++.+   ......+..|.++| +.-++-+. |.+        +     .....++++.++.++++. +.|
T Consensus        76 --~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~~~~~lrp  153 (321)
T 3c1o_A           76 --KQVDIVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDRIKPLPPFESVLEKKRIIRRAIEAAALPYTYVSA  153 (321)
T ss_dssp             --TTCSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEECSCCSSCGGGCCCCHHHHHHHHHHHHHHHHHHHHTCCBEEEEC
T ss_pred             --cCCCEEEECCCccchhhHHHHHHHHHHhCCccEEeccccccCccccccCCCcchHHHHHHHHHHHHHHcCCCeEEEEe
Confidence              479999988753   45677888888888 65444333 421        1     012345666666665533 446


Q ss_pred             CCcHH
Q 022057          164 TLSIG  168 (303)
Q Consensus       164 N~SiG  168 (303)
                      |+=.|
T Consensus       154 ~~~~~  158 (321)
T 3c1o_A          154 NCFGA  158 (321)
T ss_dssp             CEEHH
T ss_pred             ceecc
Confidence            66444

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.44  E-value=0.012  Score=52.48  Aligned_cols=94  Identities=18%  Similarity=0.159  Sum_probs=57.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC----eee-cCCHHHHHhccccCCCccEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE----IPV-MSDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g----v~v-~~dl~~~l~~~~~~~~~DVv  110 (303)
                      |||+|+|+ |.||..++..+.+ .+.++.. +|++.  .....+... ...+    ..+ .++. +.+      .++|+|
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~-~g~~V~~-~~r~~--~~~~~l~~~-~~~~~~~~~~~~~~~~-~~~------~~~d~v   67 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCK-QGHEVQG-WLRVP--QPYCSVNLV-ETDGSIFNESLTANDP-DFL------ATSDLL   67 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSC--CSEEEEEEE-CTTSCEEEEEEEESCH-HHH------HTCSEE
T ss_pred             CeEEEECc-CHHHHHHHHHHHh-CCCCEEE-EEcCc--cceeeEEEE-cCCCceeeeeeeecCc-ccc------CCCCEE
Confidence            58999998 9999999998875 5677665 56532  111111100 0011    111 2444 444      369999


Q ss_pred             EEcCCchhHHHHHHHHHH---cCCCeEEeCCCCCH
Q 022057          111 IDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL  142 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~---~g~~vVigTTG~~~  142 (303)
                      |-+..+..+.+.+.....   .+..+|.-+.|++.
T Consensus        68 i~~v~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~  102 (291)
T 1ks9_A           68 LVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGT  102 (291)
T ss_dssp             EECSCGGGHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred             EEEecHHhHHHHHHHHHhhCCCCCEEEEecCCCCc
Confidence            988888777666655443   35566766778743

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=96.43  E-value=0.00056  Score=64.68  Aligned_cols=94  Identities=14%  Similarity=0.071  Sum_probs=61.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCC--eeecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~g--v~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ..+|+|+|+ |.||+.+++.+....+.+-+.++|++.  ..+..++.. ....+  +.+++++++++.      ++|+||
T Consensus       129 ~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~--~~a~~la~~~~~~~g~~~~~~~~~~eav~------~aDiVi  199 (350)
T 1x7d_A          129 ARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDP--LATAKLIANLKEYSGLTIRRASSVAEAVK------GVDIIT  199 (350)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSH--HHHHHHHHHHTTCTTCEEEECSSHHHHHT------TCSEEE
T ss_pred             CCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCH--HHHHHHHHHHHhccCceEEEeCCHHHHHh------cCCEEE
Confidence            468999998 999999999887656677788888752  222223210 01114  456789999884      799999


Q ss_pred             EcCCchhHHHHH-HHHHHcCCCeEEeC
Q 022057          112 DFTDASTVYDNV-KQATAFGMRSVVYV  137 (303)
Q Consensus       112 DfT~p~a~~~~~-~~al~~g~~vVigT  137 (303)
                      -+|+.....+.+ ...++.|++++.-.
T Consensus       200 ~aTps~~~~pvl~~~~l~~G~~V~~vg  226 (350)
T 1x7d_A          200 TVTADKAYATIITPDMLEPGMHLNAVG  226 (350)
T ss_dssp             ECCCCSSEEEEECGGGCCTTCEEEECS
T ss_pred             EeccCCCCCceecHHHcCCCCEEEECC
Confidence            888643211111 24567898888543

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.35  E-value=0.00059  Score=59.32  Aligned_cols=91  Identities=12%  Similarity=0.057  Sum_probs=55.2

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      +.+||+|+|+ |+||+.+++.+.+ .++++. +++++..   ...+.    ..++... ++++++      .++|+||-+
T Consensus        18 ~~~~I~iIG~-G~mG~~la~~L~~-~G~~V~-~~~r~~~---~~~~~----~~g~~~~-~~~~~~------~~aDvVila   80 (201)
T 2yjz_A           18 KQGVVCIFGT-GDFGKSLGLKMLQ-CGYSVV-FGSRNPQ---VSSLL----PRGAEVL-CYSEAA------SRSDVIVLA   80 (201)
Confidence            3579999997 9999999998874 466655 3565421   11121    2345544 666766      479999977


Q ss_pred             CCchhHHHHHHHH-HHcCCCeEEeCCCCC
Q 022057          114 TDASTVYDNVKQA-TAFGMRSVVYVPHIQ  141 (303)
Q Consensus       114 T~p~a~~~~~~~a-l~~g~~vVigTTG~~  141 (303)
                      +.+....+.+... ...+.-+|.-++|.+
T Consensus        81 v~~~~~~~v~~l~~~~~~~ivI~~~~G~~  109 (201)
T 2yjz_A           81 VHREHYDFLAELADSLKGRVLIDVSNNQK  109 (201)
Confidence            7766554443211 123444555455764

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.33  E-value=0.0033  Score=57.94  Aligned_cols=117  Identities=14%  Similarity=0.119  Sum_probs=66.3

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC--CC-CC------CeeecCCHHHHHhccccC
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM--EQ-PL------EIPVMSDLTMVLGSISQS  104 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~--~~-~~------gv~v~~dl~~~l~~~~~~  104 (303)
                      |+|||+|+|+ |.||..++..+.+ .+.++.. ++++.. +.+.+ .|+  .. ..      .+.++++++++.      
T Consensus         1 M~mkI~IiGa-GaiG~~~a~~L~~-~g~~V~~-~~r~~~-~~i~~-~Gl~~~~~~~g~~~~~~~~~~~~~~~~~------   69 (320)
T 3i83_A            1 MSLNILVIGT-GAIGSFYGALLAK-TGHCVSV-VSRSDY-ETVKA-KGIRIRSATLGDYTFRPAAVVRSAAELE------   69 (320)
T ss_dssp             --CEEEEESC-CHHHHHHHHHHHH-TTCEEEE-ECSTTH-HHHHH-HCEEEEETTTCCEEECCSCEESCGGGCS------
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHh-CCCeEEE-EeCChH-HHHHh-CCcEEeecCCCcEEEeeeeeECCHHHcC------
Confidence            6689999998 9999999998875 4667664 555421 11111 010  00 01      234566776663      


Q ss_pred             CCccEEEEcCCchhHHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057          105 KARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       105 ~~~DVvIDfT~p~a~~~~~~~a---l~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      .++|+||-++.+..+.+.+...   +..+..+|+-.-|+..+  +.|.+....  -+++.++++
T Consensus        70 ~~~DlVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~--~~l~~~~~~--~~vl~g~~~  129 (320)
T 3i83_A           70 TKPDCTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIE--PEVAAAFPD--NEVISGLAF  129 (320)
T ss_dssp             SCCSEEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCS--HHHHHHSTT--SCEEEEEEE
T ss_pred             CCCCEEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChH--HHHHHHCCC--CcEEEEEEE
Confidence            3789999888766655554443   33455667666788632  234444332  244544433

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.33  E-value=0.008  Score=55.16  Aligned_cols=105  Identities=12%  Similarity=0.086  Sum_probs=61.0

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-----CCC---CeeecCCHHHHHhccccCC
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-----QPL---EIPVMSDLTMVLGSISQSK  105 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-----~~~---gv~v~~dl~~~l~~~~~~~  105 (303)
                      |+|||+|+|+ |.||..++..+.+ .+.++. +++++.. +.+.+ .|+.     ...   .+.++++.+++       .
T Consensus         1 M~mkI~IiGa-GaiG~~~a~~L~~-~g~~V~-~~~r~~~-~~i~~-~g~~~~~~~g~~~~~~~~~~~~~~~~-------~   68 (312)
T 3hn2_A            1 MSLRIAIVGA-GALGLYYGALLQR-SGEDVH-FLLRRDY-EAIAG-NGLKVFSINGDFTLPHVKGYRAPEEI-------G   68 (312)
T ss_dssp             ---CEEEECC-STTHHHHHHHHHH-TSCCEE-EECSTTH-HHHHH-TCEEEEETTCCEEESCCCEESCHHHH-------C
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHH-CCCeEE-EEEcCcH-HHHHh-CCCEEEcCCCeEEEeeceeecCHHHc-------C
Confidence            5689999998 9999999998875 456655 4555421 11110 0100     001   23445677653       4


Q ss_pred             CccEEEEcCCchhHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHHh
Q 022057          106 ARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFC  152 (303)
Q Consensus       106 ~~DVvIDfT~p~a~~~~~~~al---~~g~~vVigTTG~~~e~~~~L~~~a  152 (303)
                      ++|+||-++.+....+.+....   ..+..+|+-.-|+..++  .|.+..
T Consensus        69 ~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~--~l~~~~  116 (312)
T 3hn2_A           69 PMDLVLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNEE--ALATLF  116 (312)
T ss_dssp             CCSEEEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHHH--HHHHHT
T ss_pred             CCCEEEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcHH--HHHHHC
Confidence            7999998888777666655543   34455666566997432  344443

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.30  E-value=0.015  Score=53.62  Aligned_cols=106  Identities=14%  Similarity=0.142  Sum_probs=62.8

Q ss_pred             CCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cC-------CCCCCeeecCCHHHHHhccc
Q 022057           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DM-------EQPLEIPVMSDLTMVLGSIS  102 (303)
Q Consensus        32 ~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~-------~~~~gv~v~~dl~~~l~~~~  102 (303)
                      .-+++||+|+|+ |.||..++..+.+ .+.++... .+.   ..+..+.  |.       .....+..+++++++     
T Consensus        16 ~~~~~kI~IiGa-Ga~G~~~a~~L~~-~G~~V~l~-~~~---~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~-----   84 (318)
T 3hwr_A           16 YFQGMKVAIMGA-GAVGCYYGGMLAR-AGHEVILI-ARP---QHVQAIEATGLRLETQSFDEQVKVSASSDPSAV-----   84 (318)
T ss_dssp             ----CEEEEESC-SHHHHHHHHHHHH-TTCEEEEE-CCH---HHHHHHHHHCEEEECSSCEEEECCEEESCGGGG-----
T ss_pred             hccCCcEEEECc-CHHHHHHHHHHHH-CCCeEEEE-EcH---hHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHHc-----
Confidence            344789999998 9999999998875 56777765 221   1111111  00       001233445676553     


Q ss_pred             cCCCccEEEEcCCchhHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHHh
Q 022057          103 QSKARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFC  152 (303)
Q Consensus       103 ~~~~~DVvIDfT~p~a~~~~~~~al---~~g~~vVigTTG~~~e~~~~L~~~a  152 (303)
                        .++|+||-++.+..+.+.+....   ..+..+|.-+-|+..++  .|.+..
T Consensus        85 --~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~--~l~~~~  133 (318)
T 3hwr_A           85 --QGADLVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENAD--TLRSLL  133 (318)
T ss_dssp             --TTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHH--HHHHHC
T ss_pred             --CCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHH--HHHHHc
Confidence              47999998887777766665543   33555666677998643  444443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.28  E-value=0.017  Score=49.87  Aligned_cols=33  Identities=18%  Similarity=0.402  Sum_probs=28.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      .+||.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~-~G~~V~~~~R   53 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKN-KGHEPVAMVR   53 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CCeEEEECCCChHHHHHHHHHHh-CCCeEEEEEC
Confidence            47999999999999999999885 5788887543

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.27  E-value=0.006  Score=55.24  Aligned_cols=107  Identities=16%  Similarity=0.134  Sum_probs=64.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .+||+|+|+ |+||+.++..+.+. ++++ .+++++.  ..+.+++   ..+++.+++++++++      .++|+||.+|
T Consensus       129 ~~~v~iiGa-G~~g~aia~~L~~~-g~~V-~v~~r~~--~~~~~l~---~~~g~~~~~~~~~~~------~~aDiVi~at  194 (275)
T 2hk9_A          129 EKSILVLGA-GGASRAVIYALVKE-GAKV-FLWNRTK--EKAIKLA---QKFPLEVVNSPEEVI------DKVQVIVNTT  194 (275)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHH-TCEE-EEECSSH--HHHHHHT---TTSCEEECSCGGGTG------GGCSEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHc-CCEE-EEEECCH--HHHHHHH---HHcCCeeehhHHhhh------cCCCEEEEeC
Confidence            368999998 99999999998865 5654 5677642  2233443   345676676887777      3799999888


Q ss_pred             CchhHH---HHH-HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057          115 DASTVY---DNV-KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus       115 ~p~a~~---~~~-~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      ++....   +.+ ...++.|.-++--.+ ..    ..+.+.+++.|+.++
T Consensus       195 p~~~~~~~~~~i~~~~l~~g~~viDv~~-~~----t~ll~~a~~~g~~~v  239 (275)
T 2hk9_A          195 SVGLKDEDPEIFNYDLIKKDHVVVDIIY-KE----TKLLKKAKEKGAKLL  239 (275)
T ss_dssp             STTSSTTCCCSSCGGGCCTTSEEEESSS-SC----CHHHHHHHHTTCEEE
T ss_pred             CCCCCCCCCCCCCHHHcCCCCEEEEcCC-Ch----HHHHHHHHHCcCEEE
Confidence            765421   112 122344544433222 21    234555666666644

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=96.25  E-value=0.0089  Score=53.57  Aligned_cols=34  Identities=26%  Similarity=0.270  Sum_probs=28.6

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAI   67 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~v   67 (303)
                      |++||.|.|++|.+|+.+++.+.+. ++.++++..
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~   35 (312)
T 2yy7_A            1 MNPKILIIGACGQIGTELTQKLRKLYGTENVIASD   35 (312)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred             CCceEEEECCccHHHHHHHHHHHHhCCCCEEEEEc
Confidence            5678999999999999999999876 477887654

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.24  E-value=0.011  Score=52.92  Aligned_cols=125  Identities=14%  Similarity=0.151  Sum_probs=70.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCc----chhhhhcCCCCCCeee----cC---CHHHHHhcccc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE----DIGMVCDMEQPLEIPV----MS---DLTMVLGSISQ  103 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~----d~~~~~g~~~~~gv~v----~~---dl~~~l~~~~~  103 (303)
                      |++|.|.|++|.+|+.+++.+.+. +.++++. +++....    ....+..+ ...++.+    ..   ++.+++     
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l-~R~~~~~~~~~~~~~~~~l-~~~~v~~v~~D~~d~~~l~~~~-----   75 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDL-GHPTFLL-VRESTASSNSEKAQLLESF-KASGANIVHGSIDDHASLVEAV-----   75 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEE-CCCCCTTTTHHHHHHHHHH-HTTTCEEECCCTTCHHHHHHHH-----
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhC-CCCEEEE-ECCcccccCHHHHHHHHHH-HhCCCEEEEeccCCHHHHHHHH-----
Confidence            578999999999999999998864 6777764 4432111    00000000 0123322    12   344455     


Q ss_pred             CCCccEEEEcCCc---hhHHHHHHHHHHcC-CCeEEeCC-CCC--------H-----HHHHHHHHHhhhcCCeEE-EcCC
Q 022057          104 SKARAVVIDFTDA---STVYDNVKQATAFG-MRSVVYVP-HIQ--------L-----ETVSALSAFCDKASMGCL-IAPT  164 (303)
Q Consensus       104 ~~~~DVvIDfT~p---~a~~~~~~~al~~g-~~vVigTT-G~~--------~-----e~~~~L~~~a~~~~i~vv-~a~N  164 (303)
                       .++|+||.++.+   ......+..|.++| +.-++-++ |.+        +     .....++++.++.++++. +.|+
T Consensus        76 -~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~~~~~~r~~  154 (308)
T 1qyc_A           76 -KNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSN  154 (308)
T ss_dssp             -HTCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEECSCCSSCTTSCCCCTTHHHHHHHHHHHHHHHHHHTCCBEEEECC
T ss_pred             -cCCCEEEECCcchhhhhHHHHHHHHHhcCCCceEeecccccCccccccCCcchhHHHHHHHHHHHHHhcCCCeEEEEec
Confidence             368999988754   34567778888888 65454332 411        1     112345566666665543 4565


Q ss_pred             CcHH
Q 022057          165 LSIG  168 (303)
Q Consensus       165 ~SiG  168 (303)
                      +=.|
T Consensus       155 ~~~~  158 (308)
T 1qyc_A          155 CFAG  158 (308)
T ss_dssp             EEHH
T ss_pred             eecc
Confidence            5444

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.24  E-value=0.013  Score=53.07  Aligned_cols=38  Identities=13%  Similarity=0.230  Sum_probs=28.0

Q ss_pred             CCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        30 ~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      .|.++++||.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus         9 ~~~~~~~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r   46 (335)
T 1rpn_A            9 HHGSMTRSALVTGITGQDGAYLAKLLLE-KGYRVHGLVA   46 (335)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             cccccCCeEEEECCCChHHHHHHHHHHH-CCCeEEEEeC
Confidence            4678889999999999999999999886 4788887553

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.23  E-value=0.0085  Score=56.52  Aligned_cols=66  Identities=20%  Similarity=0.171  Sum_probs=46.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .++|+|+|+ |+||+.+++.+. .-++++.+ +|+... ....      ...|+..+.++++++.      .+|+|+...
T Consensus       168 g~tvGIIG~-G~IG~~vA~~l~-~~G~~V~~-~d~~~~-~~~~------~~~g~~~~~~l~ell~------~aDvV~l~~  231 (347)
T 1mx3_A          168 GETLGIIGL-GRVGQAVALRAK-AFGFNVLF-YDPYLS-DGVE------RALGLQRVSTLQDLLF------HSDCVTLHC  231 (347)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-TTTCEEEE-ECTTSC-TTHH------HHHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEeE-CHHHHHHHHHHH-HCCCEEEE-ECCCcc-hhhH------hhcCCeecCCHHHHHh------cCCEEEEcC
Confidence            468999997 999999999887 46888765 676421 1111      1234555568999985      699999876


Q ss_pred             Cc
Q 022057          115 DA  116 (303)
Q Consensus       115 ~p  116 (303)
                      +.
T Consensus       232 P~  233 (347)
T 1mx3_A          232 GL  233 (347)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.21  E-value=0.035  Score=51.72  Aligned_cols=74  Identities=18%  Similarity=0.115  Sum_probs=46.8

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC---C--cchhhhh-cCCCCCCeeecCCHHHHHhccccCCC
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---G--EDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSKA  106 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~---g--~d~~~~~-g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (303)
                      |+++||+|+|+ |.||..++..+....-.+ +..+|.+..   +  .+..... -......+..++|+++.+      .+
T Consensus         7 ~~~~kI~VIGa-G~vG~~lA~~la~~g~~~-V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~------~~   78 (331)
T 1pzg_A            7 QRRKKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAAL------TG   78 (331)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTCCE-EEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHH------TT
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHh------CC
Confidence            33579999998 999999999888643337 667886431   1  1111110 000123455578998777      48


Q ss_pred             ccEEEEcC
Q 022057          107 RAVVIDFT  114 (303)
Q Consensus       107 ~DVvIDfT  114 (303)
                      +|+||...
T Consensus        79 aDiVi~a~   86 (331)
T 1pzg_A           79 ADCVIVTA   86 (331)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEcc
Confidence            99999764

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.19  E-value=0.011  Score=52.92  Aligned_cols=92  Identities=22%  Similarity=0.303  Sum_probs=54.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-CCcc----hhhhhcCCCCCCeee----cCC---HHHHHhccc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGED----IGMVCDMEQPLEIPV----MSD---LTMVLGSIS  102 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d----~~~~~g~~~~~gv~v----~~d---l~~~l~~~~  102 (303)
                      |++|.|.|++|.+|+.+++.+.+. +.++++.. ++. ...+    ...+..+ ...++.+    ..|   +.+++    
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~-R~~~~~~~~~~~~~~~~~l-~~~~v~~v~~D~~d~~~l~~~~----   74 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKA-GNPTYALV-RKTITAANPETKEELIDNY-QSLGVILLEGDINDHETLVKAI----   74 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHH-TCCEEEEE-CCSCCSSCHHHHHHHHHHH-HHTTCEEEECCTTCHHHHHHHH----
T ss_pred             CcEEEEECCCchHHHHHHHHHHhC-CCcEEEEE-CCCcccCChHHHHHHHHHH-HhCCCEEEEeCCCCHHHHHHHH----
Confidence            578999999999999999998864 57777644 331 1111    1000000 0112222    123   34444    


Q ss_pred             cCCCccEEEEcCCc---hhHHHHHHHHHHcC-CCeEE
Q 022057          103 QSKARAVVIDFTDA---STVYDNVKQATAFG-MRSVV  135 (303)
Q Consensus       103 ~~~~~DVvIDfT~p---~a~~~~~~~al~~g-~~vVi  135 (303)
                        .++|+||..+.+   ......+..|.++| +.-++
T Consensus        75 --~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           75 --KQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             --TTCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             --hCCCEEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence              468999987643   45567777888887 55444

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=96.19  E-value=0.0073  Score=53.82  Aligned_cols=86  Identities=21%  Similarity=0.282  Sum_probs=53.1

Q ss_pred             CCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE
Q 022057           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (303)
Q Consensus        30 ~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (303)
                      .|.+..+||.|.|++|.+|+.+++.+.+ .+.++++. ++..  -|+.            -.++++++++.    .++|+
T Consensus         7 ~~~~~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~-~r~~--~Dl~------------d~~~~~~~~~~----~~~d~   66 (292)
T 1vl0_A            7 HHHHHHMKILITGANGQLGREIQKQLKG-KNVEVIPT-DVQD--LDIT------------NVLAVNKFFNE----KKPNV   66 (292)
T ss_dssp             -----CEEEEEESTTSHHHHHHHHHHTT-SSEEEEEE-CTTT--CCTT------------CHHHHHHHHHH----HCCSE
T ss_pred             ccccccceEEEECCCChHHHHHHHHHHh-CCCeEEec-cCcc--CCCC------------CHHHHHHHHHh----cCCCE
Confidence            3556679999999999999999998885 57888764 4421  1111            12234556631    26899


Q ss_pred             EEEcCCch------------------hHHHHHHHHHHcCCCeEE
Q 022057          110 VIDFTDAS------------------TVYDNVKQATAFGMRSVV  135 (303)
Q Consensus       110 vIDfT~p~------------------a~~~~~~~al~~g~~vVi  135 (303)
                      ||.+....                  .....++.|.++|..+|.
T Consensus        67 vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv~  110 (292)
T 1vl0_A           67 VINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQ  110 (292)
T ss_dssp             EEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEE
T ss_pred             EEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence            99876321                  134556677777776653

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.18  E-value=0.0099  Score=53.52  Aligned_cols=88  Identities=15%  Similarity=0.175  Sum_probs=50.0

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |++||.|.|++|.+|+.+++.+.+ .+.++++......  .. + ..    ..++.-..+++++++.    .++|+||.+
T Consensus         1 m~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~--~~-~-~~----~~Dl~d~~~~~~~~~~----~~~d~vih~   67 (315)
T 2ydy_A            1 MNRRVLVTGATGLLGRAVHKEFQQ-NNWHAVGCGFRRA--RP-K-FE----QVNLLDSNAVHHIIHD----FQPHVIVHC   67 (315)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHT-TTCEEEEEC--------------------------CHHHHHH----HCCSEEEEC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHh-CCCeEEEEccCCC--CC-C-eE----EecCCCHHHHHHHHHh----hCCCEEEEC
Confidence            457999999999999999999885 5788886542211  00 0 10    1122223455666642    258999987


Q ss_pred             CCc------------------hhHHHHHHHHHHcCCCeE
Q 022057          114 TDA------------------STVYDNVKQATAFGMRSV  134 (303)
Q Consensus       114 T~p------------------~a~~~~~~~al~~g~~vV  134 (303)
                      ...                  ......++.|.++|..+|
T Consensus        68 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v  106 (315)
T 2ydy_A           68 AAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLI  106 (315)
T ss_dssp             C-------------------CHHHHHHHHHHHHHTCEEE
T ss_pred             CcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence            532                  123456677777777665

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.17  E-value=0.0019  Score=57.95  Aligned_cols=105  Identities=11%  Similarity=0.082  Sum_probs=61.6

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCCc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p  116 (303)
                      ||+|+|+ |+||+.++..+.+. +++ +.++|++.  ..+..++.   .++.. +++++++ .      ++|+||..|++
T Consensus       118 ~v~iiG~-G~~g~~~a~~l~~~-g~~-v~v~~r~~--~~~~~l~~---~~~~~-~~~~~~~-~------~~Divi~~tp~  181 (263)
T 2d5c_A          118 PALVLGA-GGAGRAVAFALREA-GLE-VWVWNRTP--QRALALAE---EFGLR-AVPLEKA-R------EARLLVNATRV  181 (263)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHT-TCC-EEEECSSH--HHHHHHHH---HHTCE-ECCGGGG-G------GCSEEEECSST
T ss_pred             eEEEECC-cHHHHHHHHHHHHC-CCE-EEEEECCH--HHHHHHHH---Hhccc-hhhHhhc-c------CCCEEEEccCC
Confidence            8999998 99999999988764 554 45677642  22223321   22333 4566666 4      69999988876


Q ss_pred             hhHH---HHH-HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057          117 STVY---DNV-KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus       117 ~a~~---~~~-~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      ..+.   +.+ ..+++.|..++ -. +.++.+. ++.+.+++.++.++
T Consensus       182 ~~~~~~~~~l~~~~l~~g~~vi-D~-~~~p~~t-~l~~~a~~~g~~~v  226 (263)
T 2d5c_A          182 GLEDPSASPLPAELFPEEGAAV-DL-VYRPLWT-RFLREAKAKGLKVQ  226 (263)
T ss_dssp             TTTCTTCCSSCGGGSCSSSEEE-ES-CCSSSSC-HHHHHHHHTTCEEE
T ss_pred             CCCCCCCCCCCHHHcCCCCEEE-Ee-ecCCccc-HHHHHHHHCcCEEE
Confidence            5321   111 23445566444 32 2222222 36677777777644

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.17  E-value=0.0078  Score=56.29  Aligned_cols=66  Identities=23%  Similarity=0.185  Sum_probs=45.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .++|+|+|+ |+||+.+++.+. .-++++. ++|+... .   +..   ...++.. .++++++.      ++|+|+...
T Consensus       146 g~~vgIIG~-G~iG~~vA~~l~-~~G~~V~-~~d~~~~-~---~~~---~~~g~~~-~~l~e~l~------~aDiVil~v  208 (333)
T 2d0i_A          146 GKKVGILGM-GAIGKAIARRLI-PFGVKLY-YWSRHRK-V---NVE---KELKARY-MDIDELLE------KSDIVILAL  208 (333)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHG-GGTCEEE-EECSSCC-H---HHH---HHHTEEE-CCHHHHHH------HCSEEEECC
T ss_pred             cCEEEEEcc-CHHHHHHHHHHH-HCCCEEE-EECCCcc-h---hhh---hhcCcee-cCHHHHHh------hCCEEEEcC
Confidence            478999998 999999999877 4578876 4776431 1   111   1234443 48888884      799999877


Q ss_pred             Cch
Q 022057          115 DAS  117 (303)
Q Consensus       115 ~p~  117 (303)
                      ++.
T Consensus       209 p~~  211 (333)
T 2d0i_A          209 PLT  211 (333)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            554

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.13  E-value=0.011  Score=51.04  Aligned_cols=34  Identities=15%  Similarity=0.256  Sum_probs=29.2

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAI   67 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~v   67 (303)
                      +|++|.|.|++|.+|+.+++.+.+.. +.++++..
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~   37 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLV   37 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEE
Confidence            46799999999999999999998765 78888754

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.11  E-value=0.011  Score=55.72  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=27.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ..||.|+|+ |..|..+++.+.. .++.=+.++|.
T Consensus        34 ~~~VlIvGa-GGlGs~va~~La~-aGVg~ItlvD~   66 (340)
T 3rui_A           34 NTKVLLLGA-GTLGCYVSRALIA-WGVRKITFVDN   66 (340)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCCEEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-cCCCEEEEecC
Confidence            368999998 9999999999884 57766667774

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.09  E-value=0.02  Score=50.68  Aligned_cols=34  Identities=15%  Similarity=0.136  Sum_probs=27.7

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      .||+||.|.|+ |.+|+.+++.+.+. +.++++...
T Consensus         3 ~m~~~ilVtGa-G~iG~~l~~~L~~~-g~~V~~~~r   36 (286)
T 3ius_A            3 AMTGTLLSFGH-GYTARVLSRALAPQ-GWRIIGTSR   36 (286)
T ss_dssp             --CCEEEEETC-CHHHHHHHHHHGGG-TCEEEEEES
T ss_pred             CCcCcEEEECC-cHHHHHHHHHHHHC-CCEEEEEEc
Confidence            36789999998 99999999998864 788887653

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=96.08  E-value=0.022  Score=55.56  Aligned_cols=33  Identities=27%  Similarity=0.402  Sum_probs=26.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      ++||+|+|+ |.||..++..+. ..+++++ ++|++
T Consensus        37 ~~kV~VIGa-G~MG~~iA~~la-~~G~~V~-l~D~~   69 (463)
T 1zcj_A           37 VSSVGVLGL-GTMGRGIAISFA-RVGISVV-AVESD   69 (463)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTTCEEE-EECSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEECC
Confidence            578999998 999999999877 4688876 46753

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.06  E-value=0.019  Score=51.49  Aligned_cols=92  Identities=22%  Similarity=0.237  Sum_probs=54.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCc---chhhhhcCCCCCCeee----cCC---HHHHHhccccC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE---DIGMVCDMEQPLEIPV----MSD---LTMVLGSISQS  104 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~---d~~~~~g~~~~~gv~v----~~d---l~~~l~~~~~~  104 (303)
                      |++|.|.|++|.+|+.+++.+.+. +.++++.. ++....   ....+..+ ...++.+    ..|   +.+++      
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~-R~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~l~~~~------   74 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISL-GHPTYVLF-RPEVVSNIDKVQMLLYF-KQLGAKLIEASLDDHQRLVDAL------   74 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEEC-CSCCSSCHHHHHHHHHH-HTTTCEEECCCSSCHHHHHHHH------
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhC-CCcEEEEE-CCCcccchhHHHHHHHH-HhCCeEEEeCCCCCHHHHHHHH------
Confidence            578999999999999999998864 67877644 322110   11111000 0122322    123   44455      


Q ss_pred             CCccEEEEcCCc-------hhHHHHHHHHHHcC-CCeEE
Q 022057          105 KARAVVIDFTDA-------STVYDNVKQATAFG-MRSVV  135 (303)
Q Consensus       105 ~~~DVvIDfT~p-------~a~~~~~~~al~~g-~~vVi  135 (303)
                      .++|+||.++.+       ......++.|.++| +.-++
T Consensus        75 ~~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           75 KQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             TTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             hCCCEEEECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence            479999987642       34567778888888 54444

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=96.06  E-value=0.0056  Score=58.00  Aligned_cols=37  Identities=24%  Similarity=0.386  Sum_probs=28.7

Q ss_pred             CCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        31 ~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      |+.|++||+|+|+ ||+||.+.+.+.+. ++++|++=|.
T Consensus        17 ~~~~~~kVaInGf-GrIGr~vlr~l~e~-~~~ivaIndl   53 (356)
T 3hja_A           17 QGPGSMKLAINGF-GRIGRNVFKIAFER-GIDIVAINDL   53 (356)
T ss_dssp             -----CEEEEECC-SHHHHHHHHHHHHT-TCEEEEEECS
T ss_pred             cCCCCeEEEEECC-CHHHHHHHHHHHHC-CCCEEEEeCC
Confidence            4455699999998 99999999998876 8999998653

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=96.05  E-value=0.017  Score=52.05  Aligned_cols=62  Identities=16%  Similarity=0.090  Sum_probs=40.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ++||.|.|++|.+|+.+++.+.+ .+.++++. ++...             .++.-..+++++++.    .++|+||.+.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~-~g~~v~~~-~r~~~-------------~D~~d~~~~~~~~~~----~~~d~vih~a   63 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQ-RGDVELVL-RTRDE-------------LNLLDSRAVHDFFAS----ERIDQVYLAA   63 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTT-CTTEEEEC-CCTTT-------------CCTTCHHHHHHHHHH----HCCSEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHh-CCCeEEEE-ecCcc-------------CCccCHHHHHHHHHh----cCCCEEEEcC
Confidence            47999999999999999998885 57887763 33210             111112344555531    2799999876


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      .
T Consensus        64 ~   64 (321)
T 1e6u_A           64 A   64 (321)
T ss_dssp             C
T ss_pred             e
Confidence            3

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.04  E-value=0.021  Score=49.24  Aligned_cols=124  Identities=19%  Similarity=0.183  Sum_probs=68.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-c---CCHHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |||.|+|+ |++|+.+++.+.+ .+.+++. +|++.  ..+..+.   ...++.+ .   .+.+.+.+.  ...++|++|
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~-~g~~v~v-id~~~--~~~~~l~---~~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi   70 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLS-RKYGVVI-INKDR--ELCEEFA---KKLKATIIHGDGSHKEILRDA--EVSKNDVVV   70 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHH-TTCCEEE-EESCH--HHHHHHH---HHSSSEEEESCTTSHHHHHHH--TCCTTCEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCeEEE-EECCH--HHHHHHH---HHcCCeEEEcCCCCHHHHHhc--CcccCCEEE
Confidence            58999998 9999999998875 5777774 66542  1122222   1123322 2   232222110  014789999


Q ss_pred             EcCCchhHHHHHHH-HHH-cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHH
Q 022057          112 DFTDASTVYDNVKQ-ATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQ  174 (303)
Q Consensus       112 DfT~p~a~~~~~~~-al~-~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~  174 (303)
                      -++..+.....+.. +.+ ++..-++...-. ++..+.+    ++.|+..+++|....+-.+...
T Consensus        71 ~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~-~~~~~~l----~~~G~d~vi~p~~~~~~~l~~~  130 (218)
T 3l4b_C           71 ILTPRDEVNLFIAQLVMKDFGVKRVVSLVND-PGNMEIF----KKMGITTVLNLTTLITNTVEAL  130 (218)
T ss_dssp             ECCSCHHHHHHHHHHHHHTSCCCEEEECCCS-GGGHHHH----HHHTCEECCCHHHHHHHHHHHH
T ss_pred             EecCCcHHHHHHHHHHHHHcCCCeEEEEEeC-cchHHHH----HHCCCCEEECHHHHHHHHHHHH
Confidence            77766655444433 333 466555544322 2333344    3446777887876655544433

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.02  E-value=0.022  Score=52.00  Aligned_cols=33  Identities=21%  Similarity=0.170  Sum_probs=28.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      ++||.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   57 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLK-LNQVVIGLDN   57 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHH-CCCEEEEEeC
Confidence            57999999999999999999885 5788887654

>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419, structural genomics, JCSG, PSI, protein structure initiative; HET: NAD; 1.70A {Thermotoga maritima} PDB: 3cin_A*

Probab=96.01  E-value=0.034  Score=53.02  Aligned_cols=144  Identities=13%  Similarity=0.146  Sum_probs=92.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHh---c-----------------CCcEEEEEEec--CCCCcchhhhhcC----CCC--C
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTK---A-----------------RGMEVAGAIDS--HSVGEDIGMVCDM----EQP--L   86 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~---~-----------------~~~eLvg~vd~--~~~g~d~~~~~g~----~~~--~   86 (303)
                      |+||.|+|. |...+.+++-+..   .                 .|+|+|+++|.  ++.|+|+.+.+-.    -.+  .
T Consensus        13 ~~~~~~~Gv-Gn~ASslvqGie~yk~~~~~~~Gl~~~~~~~y~~~DievvaafDVd~~KVGkdl~eai~~~pn~Vp~~l~   91 (394)
T 1vjp_A           13 MVKVLILGQ-GYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSLTS   91 (394)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEECBTTTTTSBHHHHHHHHCTTCCCCSS
T ss_pred             eeeeEEEEe-hHHHHHHHHHHHHHHcCCCCCccccchhccCCCcCceEEEEEEeccccccCCcHHHHHhhCcCCCCcccC
Confidence            799999998 9999998875542   1                 13799999984  5678887554310    011  1


Q ss_pred             Ceeec-----C----------------CHHHHHh---ccccCCCccEEEEcC------Cch------------------h
Q 022057           87 EIPVM-----S----------------DLTMVLG---SISQSKARAVVIDFT------DAS------------------T  118 (303)
Q Consensus        87 gv~v~-----~----------------dl~~~l~---~~~~~~~~DVvIDfT------~p~------------------a  118 (303)
                      +|.+.     +                +.++..+   +.+++.++||+|...      +..                  +
T Consensus        92 ~V~V~~G~~ldg~~~~~~~~~~~~e~~s~~e~v~~vv~~lk~~~~DVvIn~~STE~~~p~gs~~~l~~ai~~~~~~~i~a  171 (394)
T 1vjp_A           92 DPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKERLTA  171 (394)
T ss_dssp             CCBCEECCCTTTTTTSSCCBCCGGGSSCHHHHHHHHHHHHHHHCCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTTTCCH
T ss_pred             CCEEEeccccCcccccchhhhccccccchhhHHHHHHHHHHHcCCCEEEEecCccCCCCCCCHHHHHHHHhcCCCCccCh
Confidence            22210     0                1122111   112335799999986      222                  3


Q ss_pred             HHHHHHHHHH-----cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH-HHHhcc
Q 022057          119 VYDNVKQATA-----FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA-AISASF  181 (303)
Q Consensus       119 ~~~~~~~al~-----~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~-a~~~~~  181 (303)
                      ..-++..|++     .|++.|-++|-+... ...+.++++++|+| +..-.|..|..+|... +..+..
T Consensus       172 S~~YA~AAl~~~~~~aG~~fVN~~P~~ia~-~P~~~ela~~~gvp-i~GDD~ktGqT~lks~La~~l~~  238 (394)
T 1vjp_A          172 TQVYAYAAALYANKRGGAAFVNVIPTFIAN-DPAFVELAKENNLV-VFGDDGATGATPFTADVLSHLAQ  238 (394)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEECSSSCSTT-CHHHHHHHHHTTEE-EECSSBSCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccCCcceEecCCccccC-CHHHHHHHHHcCCC-EEccccCCCCCchHHHHHHHHHH
Confidence            3446678899     999999999965421 13578889999988 6677799999988654 444443

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=96.00  E-value=0.003  Score=57.58  Aligned_cols=83  Identities=12%  Similarity=0.054  Sum_probs=46.7

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |+|||+|+|+ |.||..++..+.+. +.++. +++++..+.+.....|   .....+..+..+.+.     .++|+||-+
T Consensus         1 M~mkI~iiGa-Ga~G~~~a~~L~~~-g~~V~-~~~r~~~~~~~~~~~g---~~~~~~~~~~~~~~~-----~~~D~vila   69 (294)
T 3g17_A            1 MSLSVAIIGP-GAVGTTIAYELQQS-LPHTT-LIGRHAKTITYYTVPH---APAQDIVVKGYEDVT-----NTFDVIIIA   69 (294)
T ss_dssp             --CCEEEECC-SHHHHHHHHHHHHH-CTTCE-EEESSCEEEEEESSTT---SCCEEEEEEEGGGCC-----SCEEEEEEC
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHC-CCeEE-EEEeccCcEEEEecCC---eeccceecCchHhcC-----CCCCEEEEe
Confidence            6789999998 99999999988753 34444 3444321111110001   111233333333331     378999988


Q ss_pred             CCchhHHHHHHHHH
Q 022057          114 TDASTVYDNVKQAT  127 (303)
Q Consensus       114 T~p~a~~~~~~~al  127 (303)
                      +.+..+.+.++...
T Consensus        70 vk~~~~~~~l~~l~   83 (294)
T 3g17_A           70 VKTHQLDAVIPHLT   83 (294)
T ss_dssp             SCGGGHHHHGGGHH
T ss_pred             CCccCHHHHHHHHH
Confidence            88877766665443

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.96  E-value=0.066  Score=49.23  Aligned_cols=34  Identities=15%  Similarity=0.179  Sum_probs=29.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd   68 (303)
                      +++|.|.|++|.+|+.+++.+.+. ++.++++...
T Consensus        10 ~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r   44 (362)
T 3sxp_A           10 NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDK   44 (362)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEEC
Confidence            579999999999999999999864 6899887543

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=95.96  E-value=0.028  Score=49.88  Aligned_cols=28  Identities=14%  Similarity=0.305  Sum_probs=24.0

Q ss_pred             CCCCceeEEEEcCCcHHHHHHHHHHHhc
Q 022057           31 PPQSNIKVIINGAVKEIGRAAVIAVTKA   58 (303)
Q Consensus        31 ~~~~~ikV~V~G~~GrMG~~i~~~i~~~   58 (303)
                      |.-+|+||.|.|++|.+|+.+++.+.+.
T Consensus         2 ~~~~~~~vlVtGatG~iG~~l~~~L~~~   29 (319)
T 4b8w_A            2 LYFQSMRILVTGGSGLVGKAIQKVVADG   29 (319)
T ss_dssp             CCCCCCEEEEETCSSHHHHHHHHHHHTT
T ss_pred             ccccCCeEEEECCCcHHHHHHHHHHHhc
Confidence            3445789999999999999999998865

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=95.95  E-value=0.028  Score=52.82  Aligned_cols=61  Identities=16%  Similarity=0.147  Sum_probs=44.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -++|+|+|+ |+||+.+++.+. .-++++. ++|+...  .         ..+...+.+++++++      .+|+|+-..
T Consensus       171 gktiGIIGl-G~IG~~vA~~l~-~~G~~V~-~~dr~~~--~---------~~~~~~~~sl~ell~------~aDvVil~v  230 (340)
T 4dgs_A          171 GKRIGVLGL-GQIGRALASRAE-AFGMSVR-YWNRSTL--S---------GVDWIAHQSPVDLAR------DSDVLAVCV  230 (340)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-TTTCEEE-EECSSCC--T---------TSCCEECSSHHHHHH------TCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEcCCcc--c---------ccCceecCCHHHHHh------cCCEEEEeC
Confidence            479999998 999999999887 4688876 4675421  0         123344678999985      799998665


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       231 P  231 (340)
T 4dgs_A          231 A  231 (340)
T ss_dssp             -
T ss_pred             C
Confidence            4

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.95  E-value=0.02  Score=52.17  Aligned_cols=87  Identities=22%  Similarity=0.227  Sum_probs=51.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      +++|.|.|++|.+|+.+++.+.+ .+.++++...... ......+     ..++.-..++++++      .++|+||.+.
T Consensus        19 ~~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~r~~~-~~~~~~~-----~~Dl~d~~~~~~~~------~~~d~vih~A   85 (347)
T 4id9_A           19 SHMILVTGSAGRVGRAVVAALRT-QGRTVRGFDLRPS-GTGGEEV-----VGSLEDGQALSDAI------MGVSAVLHLG   85 (347)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHH-TTCCEEEEESSCC-SSCCSEE-----ESCTTCHHHHHHHH------TTCSEEEECC
T ss_pred             CCEEEEECCCChHHHHHHHHHHh-CCCEEEEEeCCCC-CCCccEE-----ecCcCCHHHHHHHH------hCCCEEEECC
Confidence            58999999999999999999885 4788887543221 1111000     01111122344555      4799999865


Q ss_pred             Cc----------------hhHHHHHHHHHHcCC-CeE
Q 022057          115 DA----------------STVYDNVKQATAFGM-RSV  134 (303)
Q Consensus       115 ~p----------------~a~~~~~~~al~~g~-~vV  134 (303)
                      .+                ......++.|.++++ .+|
T Consensus        86 ~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V  122 (347)
T 4id9_A           86 AFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFV  122 (347)
T ss_dssp             CCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEE
T ss_pred             cccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence            32                123456777778886 444

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.93  E-value=0.013  Score=51.78  Aligned_cols=116  Identities=13%  Similarity=0.189  Sum_probs=67.1

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeee----cCC---HHHHHhccccCCCcc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKARA  108 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~~d---l~~~l~~~~~~~~~D  108 (303)
                      ||.|.|++|.+|+.+++.+.+. ++.++++......   ....+..    .++.+    ..|   +++++      .++|
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~---~~~~~~~----~~~~~~~~D~~d~~~~~~~~------~~~d   67 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPA---KAQALAA----QGITVRQADYGDEAALTSAL------QGVE   67 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTT---TCHHHHH----TTCEEEECCTTCHHHHHHHT------TTCS
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChH---hhhhhhc----CCCeEEEcCCCCHHHHHHHH------hCCC
Confidence            5899999999999999998865 4788887543221   1111110    11211    123   34444      4689


Q ss_pred             EEEEcCCc------hhHHHHHHHHHHcCCC-eEE-eCCCC------CHHHHHHHHHHhhhcCCeEE-EcCCC
Q 022057          109 VVIDFTDA------STVYDNVKQATAFGMR-SVV-YVPHI------QLETVSALSAFCDKASMGCL-IAPTL  165 (303)
Q Consensus       109 VvIDfT~p------~a~~~~~~~al~~g~~-vVi-gTTG~------~~e~~~~L~~~a~~~~i~vv-~a~N~  165 (303)
                      +||.++.+      ......++.|.++|+. +|. ++.+.      -.......+++.++.++++. +-|++
T Consensus        68 ~vi~~a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~y~~sK~~~e~~~~~~~~~~~ilrp~~  139 (286)
T 2zcu_A           68 KLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYTSLLHADTSPLGLADEHIETEKMLADSGIVYTLLRNGW  139 (286)
T ss_dssp             EEEECC--------CHHHHHHHHHHHHTCCEEEEEEETTTTTCCSTTHHHHHHHHHHHHHHCSEEEEEEECC
T ss_pred             EEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCCcchhHHHHHHHHHHHHHcCCCeEEEeChH
Confidence            99987643      3456677788888864 443 33221      12233445666666676654 45665

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=95.91  E-value=0.026  Score=52.86  Aligned_cols=62  Identities=11%  Similarity=0.048  Sum_probs=45.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .++|+|+|+ |+||+.+++.+. .-++++.+ +|+...  .         ..++..+.++++++.      ++|+|+-..
T Consensus       164 g~~vgIIG~-G~iG~~vA~~l~-~~G~~V~~-~dr~~~--~---------~~g~~~~~~l~ell~------~aDvVil~v  223 (333)
T 3ba1_A          164 GKRVGIIGL-GRIGLAVAERAE-AFDCPISY-FSRSKK--P---------NTNYTYYGSVVELAS------NSDILVVAC  223 (333)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHH-TTTCCEEE-ECSSCC--T---------TCCSEEESCHHHHHH------TCSEEEECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HCCCEEEE-ECCCch--h---------ccCceecCCHHHHHh------cCCEEEEec
Confidence            468999998 999999999887 46788664 665421  1         113445678999884      799999877


Q ss_pred             Cc
Q 022057          115 DA  116 (303)
Q Consensus       115 ~p  116 (303)
                      ++
T Consensus       224 P~  225 (333)
T 3ba1_A          224 PL  225 (333)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.90  E-value=0.019  Score=51.34  Aligned_cols=33  Identities=21%  Similarity=0.309  Sum_probs=26.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      .||.|+|+ |.+|..+++.+.. .++.-+.++|.+
T Consensus        29 ~~VlvvG~-GglG~~va~~La~-~Gvg~i~lvD~d   61 (251)
T 1zud_1           29 SQVLIIGL-GGLGTPAALYLAG-AGVGTLVLADDD   61 (251)
T ss_dssp             CEEEEECC-STTHHHHHHHHHH-TTCSEEEEECCC
T ss_pred             CcEEEEcc-CHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence            68999998 9999999998884 576556677753

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.86  E-value=0.013  Score=51.97  Aligned_cols=120  Identities=11%  Similarity=0.124  Sum_probs=69.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeee----cCC---HHHHHhccccCCCc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKAR  107 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~~d---l~~~l~~~~~~~~~  107 (303)
                      ++|.|.|++|.+|+.+++.+.+. ++.++++......   ....+..    .++.+    ..|   +++++      .++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~---~~~~l~~----~~~~~~~~D~~d~~~l~~~~------~~~   67 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVE---KASTLAD----QGVEVRHGDYNQPESLQKAF------AGV   67 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTT---TTHHHHH----TTCEEEECCTTCHHHHHHHT------TTC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHH---HHhHHhh----cCCeEEEeccCCHHHHHHHH------hcC
Confidence            47999999999999999998865 4788887543221   1111110    11211    123   33444      469


Q ss_pred             cEEEEcCCc--------hhHHHHHHHHHHcCC-CeEE-eCCCC-----C-HHHHHHHHHHhhhcCCeEE-EcCCCcHH
Q 022057          108 AVVIDFTDA--------STVYDNVKQATAFGM-RSVV-YVPHI-----Q-LETVSALSAFCDKASMGCL-IAPTLSIG  168 (303)
Q Consensus       108 DVvIDfT~p--------~a~~~~~~~al~~g~-~vVi-gTTG~-----~-~e~~~~L~~~a~~~~i~vv-~a~N~SiG  168 (303)
                      |+||.++.+        ......++.|.++|+ ++|. ++.+.     . .......+++.++.++++. +-|++=.|
T Consensus        68 d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~y~~~K~~~E~~~~~~~~~~~ilrp~~~~~  145 (287)
T 2jl1_A           68 SKLLFISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYAFAEESIIPLAHVHLATEYAIRTTNIPYTFLRNALYTD  145 (287)
T ss_dssp             SEEEECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEETTGGGCCSTHHHHHHHHHHHHHHTTCCEEEEEECCBHH
T ss_pred             CEEEEcCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCCchHHHHHHHHHHHHHcCCCeEEEECCEecc
Confidence            999987643        234566777888886 4443 33221     1 1223445666666776654 44555444

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=95.86  E-value=0.013  Score=51.70  Aligned_cols=32  Identities=19%  Similarity=0.184  Sum_probs=27.0

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~   66 (303)
                      ||.+|.|.|++|.+|+.+++.+.+ .+.++++.
T Consensus         1 M~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~   32 (267)
T 3ay3_A            1 MLNRLLVTGAAGGVGSAIRPHLGT-LAHEVRLS   32 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHGGGGGG-TEEEEEEC
T ss_pred             CCceEEEECCCCHHHHHHHHHHHh-CCCEEEEE
Confidence            567999999999999999998875 46777764

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=95.85  E-value=0.05  Score=49.23  Aligned_cols=32  Identities=25%  Similarity=0.264  Sum_probs=28.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      |||.|.|++|.+|+.+++.+.+.++.++++..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~   32 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLD   32 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEe
Confidence            48999999999999999999876688888754

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.85  E-value=0.011  Score=54.22  Aligned_cols=94  Identities=10%  Similarity=0.068  Sum_probs=55.2

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCC---------H-HHHHhcccc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD---------L-TMVLGSISQ  103 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~d---------l-~~~l~~~~~  103 (303)
                      |+|||+|+|+ |.||..++..+.  .+.++.. ++++.  .....+.    +.|+.+..+         . ++..     
T Consensus         1 M~mkI~IiGa-Ga~G~~~a~~L~--~g~~V~~-~~r~~--~~~~~l~----~~G~~~~~~~~~~~~~~~~~~~~~-----   65 (307)
T 3ego_A            1 MSLKIGIIGG-GSVGLLCAYYLS--LYHDVTV-VTRRQ--EQAAAIQ----SEGIRLYKGGEEFRADCSADTSIN-----   65 (307)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHH--TTSEEEE-ECSCH--HHHHHHH----HHCEEEEETTEEEEECCEEESSCC-----
T ss_pred             CCCEEEEECC-CHHHHHHHHHHh--cCCceEE-EECCH--HHHHHHH----hCCceEecCCCeeccccccccccc-----
Confidence            6789999998 999999999887  5677764 44431  1111111    112221100         0 1122     


Q ss_pred             CCCccEEEEcCCchhHHHHHHHHHHcCCC-eEEeCCCCCHH
Q 022057          104 SKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPHIQLE  143 (303)
Q Consensus       104 ~~~~DVvIDfT~p~a~~~~~~~al~~g~~-vVigTTG~~~e  143 (303)
                       .++|+||-++.+..+.+.+......+.. +|+-.-|+..+
T Consensus        66 -~~~D~vilavK~~~~~~~l~~l~~~~~~~ivs~~nGi~~~  105 (307)
T 3ego_A           66 -SDFDLLVVTVKQHQLQSVFSSLERIGKTNILFLQNGMGHI  105 (307)
T ss_dssp             -SCCSEEEECCCGGGHHHHHHHTTSSCCCEEEECCSSSHHH
T ss_pred             -CCCCEEEEEeCHHHHHHHHHHhhcCCCCeEEEecCCccHH
Confidence             4789999888888777777655433222 55545588653

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.82  E-value=0.042  Score=51.13  Aligned_cols=34  Identities=24%  Similarity=0.169  Sum_probs=28.5

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      +|++|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   61 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKH-EGHYVIASDW   61 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             cCCeEEEECCccHHHHHHHHHHHH-CCCeEEEEEC
Confidence            467999999999999999999886 4788887543

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=95.81  E-value=0.007  Score=57.55  Aligned_cols=110  Identities=7%  Similarity=0.136  Sum_probs=66.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|+ |+||+.+++.+. ..+++++ +.|++.  ..+.+++   +.++.... +.++++.     .++||+|-+.
T Consensus       173 GktV~V~G~-G~VG~~~A~~L~-~~GakVv-v~D~~~--~~l~~~a---~~~ga~~v-~~~~ll~-----~~~DIvip~a  238 (364)
T 1leh_A          173 GLAVSVQGL-GNVAKALCKKLN-TEGAKLV-VTDVNK--AAVSAAV---AEEGADAV-APNAIYG-----VTCDIFAPCA  238 (364)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-HTTCEEE-EECSCH--HHHHHHH---HHHCCEEC-CGGGTTT-----CCCSEEEECS
T ss_pred             cCEEEEECc-hHHHHHHHHHHH-HCCCEEE-EEcCCH--HHHHHHH---HHcCCEEE-ChHHHhc-----cCCcEeeccc
Confidence            368999998 999999999887 4688988 788642  2222232   12233322 4456654     4899998766


Q ss_pred             CchhH-HHHHHHHHHcCCCeEEeCCC-C-CHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057          115 DASTV-YDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus       115 ~p~a~-~~~~~~al~~g~~vVigTTG-~-~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                      ..... .+++.   ..+..+|++++. . +.++   ..++.++.|+  ++.|-+.
T Consensus       239 ~~~~I~~~~~~---~lg~~iV~e~An~p~t~~e---a~~~L~~~Gi--~~~Pd~~  285 (364)
T 1leh_A          239 LGAVLNDFTIP---QLKAKVIAGSADNQLKDPR---HGKYLHELGI--VYAPDYV  285 (364)
T ss_dssp             CSCCBSTTHHH---HCCCSEECCSCSCCBSSHH---HHHHHHHHTC--EECCHHH
T ss_pred             hHHHhCHHHHH---hCCCcEEEeCCCCCcccHH---HHHHHHhCCC--EEeccee
Confidence            54433 23333   348889998873 2 2223   3333455444  6666544

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=95.81  E-value=0.022  Score=51.75  Aligned_cols=37  Identities=14%  Similarity=0.213  Sum_probs=28.7

Q ss_pred             CCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        31 ~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      ...|++||.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus         5 ~~~~~~~vlVTGatGfIG~~l~~~Ll~-~G~~V~~~~r   41 (338)
T 2rh8_A            5 HPIGKKTACVVGGTGFVASLLVKLLLQ-KGYAVNTTVR   41 (338)
T ss_dssp             ----CCEEEEECTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             cCCCCCEEEEECCchHHHHHHHHHHHH-CCCEEEEEEc
Confidence            334568999999999999999999885 6889887654

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=95.80  E-value=0.03  Score=50.93  Aligned_cols=33  Identities=21%  Similarity=0.161  Sum_probs=28.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~v   67 (303)
                      |++|.|.|++|.+|+.+++.+.+.. +.++++..
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~   37 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD   37 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEe
Confidence            5799999999999999999988653 78888754

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.79  E-value=0.037  Score=50.97  Aligned_cols=72  Identities=10%  Similarity=-0.015  Sum_probs=44.0

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcc--hhhhhcC----CCCCCeeecCCHHHHHhccccCCCc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED--IGMVCDM----EQPLEIPVMSDLTMVLGSISQSKAR  107 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d--~~~~~g~----~~~~gv~v~~dl~~~l~~~~~~~~~  107 (303)
                      ||+||+|+|+ |.||..++..+.....++ +..+|.+..-.+  +.++...    .....+..++|+ +.+      .++
T Consensus         1 M~~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~------~~a   71 (309)
T 1ur5_A            1 MRKKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADT------ANS   71 (309)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGG------TTC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHH------CCC
Confidence            5689999998 999999999887654447 777886431000  1111110    012234445787 445      489


Q ss_pred             cEEEEcC
Q 022057          108 AVVIDFT  114 (303)
Q Consensus       108 DVvIDfT  114 (303)
                      |+||...
T Consensus        72 D~Vi~a~   78 (309)
T 1ur5_A           72 DVIVVTS   78 (309)
T ss_dssp             SEEEECC
T ss_pred             CEEEEcC
Confidence            9999764

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=95.78  E-value=0.019  Score=53.37  Aligned_cols=32  Identities=22%  Similarity=0.251  Sum_probs=27.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~v   67 (303)
                      |++|.|.|++|.+|+.+++.+.+. + .++++..
T Consensus        32 ~~~ilVtGatG~iG~~l~~~L~~~-g~~~V~~~~   64 (377)
T 2q1s_A           32 NTNVMVVGGAGFVGSNLVKRLLEL-GVNQVHVVD   64 (377)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHT-TCSEEEEEC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHc-CCceEEEEE
Confidence            579999999999999999998864 6 8888753

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=95.76  E-value=0.021  Score=53.64  Aligned_cols=68  Identities=13%  Similarity=0.026  Sum_probs=46.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ..+|+|+|+ |+||+.+++.+...-+++++ ++|+..  .......    +.++....++++++.      .+|+|+...
T Consensus       163 g~~vgIIG~-G~IG~~vA~~l~~~~G~~V~-~~d~~~--~~~~~~~----~~g~~~~~~l~ell~------~aDvVil~v  228 (348)
T 2w2k_A          163 GHVLGAVGL-GAIQKEIARKAVHGLGMKLV-YYDVAP--ADAETEK----ALGAERVDSLEELAR------RSDCVSVSV  228 (348)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCCEEE-EECSSC--CCHHHHH----HHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEEE-CHHHHHHHHHHHHhcCCEEE-EECCCC--cchhhHh----hcCcEEeCCHHHHhc------cCCEEEEeC
Confidence            368999998 99999999987634678876 477642  1111111    234555568989884      699999877


Q ss_pred             Cc
Q 022057          115 DA  116 (303)
Q Consensus       115 ~p  116 (303)
                      ++
T Consensus       229 p~  230 (348)
T 2w2k_A          229 PY  230 (348)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.75  E-value=0.035  Score=51.63  Aligned_cols=66  Identities=11%  Similarity=0.074  Sum_probs=45.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .++|+|+|+ |+||+.+++.+. ..+++++ ++|++.  .......    ..++... ++++++.      ++|+|+...
T Consensus       155 g~~vgIIG~-G~iG~~iA~~l~-~~G~~V~-~~d~~~--~~~~~~~----~~g~~~~-~l~e~l~------~aDvVi~~v  218 (330)
T 2gcg_A          155 QSTVGIIGL-GRIGQAIARRLK-PFGVQRF-LYTGRQ--PRPEEAA----EFQAEFV-STPELAA------QSDFIVVAC  218 (330)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHG-GGTCCEE-EEESSS--CCHHHHH----TTTCEEC-CHHHHHH------HCSEEEECC
T ss_pred             CCEEEEECc-CHHHHHHHHHHH-HCCCEEE-EECCCC--cchhHHH----hcCceeC-CHHHHHh------hCCEEEEeC
Confidence            368999998 999999999887 4578865 467542  1111111    3455444 8888884      689999876


Q ss_pred             Cc
Q 022057          115 DA  116 (303)
Q Consensus       115 ~p  116 (303)
                      ++
T Consensus       219 p~  220 (330)
T 2gcg_A          219 SL  220 (330)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=95.75  E-value=0.032  Score=50.93  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=27.7

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      .+++|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~   58 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVD   58 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHH-CCCEEEEEe
Confidence            367999999999999999999886 478888754

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.74  E-value=0.048  Score=52.45  Aligned_cols=121  Identities=13%  Similarity=0.138  Sum_probs=72.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cC---CHHHHHhccccCCCccEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS---DLTMVLGSISQSKARAVV  110 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~---dl~~~l~~~~~~~~~DVv  110 (303)
                      .++|.|+|+ |++|+.+++.+.+ .+.+++. +|.+.  ..+..+.    ..|+++ +.   +.+-+...  ...++|++
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~-~g~~vvv-Id~d~--~~v~~~~----~~g~~vi~GDat~~~~L~~a--gi~~A~~v   72 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLS-SGVKMVV-LDHDP--DHIETLR----KFGMKVFYGDATRMDLLESA--GAAKAEVL   72 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHH-TTCCEEE-EECCH--HHHHHHH----HTTCCCEESCTTCHHHHHHT--TTTTCSEE
T ss_pred             CCeEEEECC-CHHHHHHHHHHHH-CCCCEEE-EECCH--HHHHHHH----hCCCeEEEcCCCCHHHHHhc--CCCccCEE
Confidence            368999998 9999999998875 5777775 56542  1112221    234433 22   33322211  11468988


Q ss_pred             EEcCC-chhHHHHHHHHHHcCCC--eEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHH
Q 022057          111 IDFTD-ASTVYDNVKQATAFGMR--SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (303)
Q Consensus       111 IDfT~-p~a~~~~~~~al~~g~~--vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll  172 (303)
                      |-.+. ++.....+..+.+.+.+  +|.  -..+++....|.    +.|+..++.|.+-.+..+.
T Consensus        73 iv~~~~~~~n~~i~~~ar~~~p~~~Iia--ra~~~~~~~~L~----~~Gad~Vi~~~~~~a~~la  131 (413)
T 3l9w_A           73 INAIDDPQTNLQLTEMVKEHFPHLQIIA--RARDVDHYIRLR----QAGVEKPERETFEGALKTG  131 (413)
T ss_dssp             EECCSSHHHHHHHHHHHHHHCTTCEEEE--EESSHHHHHHHH----HTTCSSCEETTHHHHHHHH
T ss_pred             EECCCChHHHHHHHHHHHHhCCCCeEEE--EECCHHHHHHHH----HCCCCEEECccHHHHHHHH
Confidence            87764 34446666677777755  443  234455555554    3556778889997777643

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.71  E-value=0.036  Score=50.48  Aligned_cols=38  Identities=16%  Similarity=0.271  Sum_probs=29.6

Q ss_pred             cCCCCC-ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           29 TNPPQS-NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        29 ~~~~~~-~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      .+|..+ .++|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus        13 ~~~~~~~~~~vlVTGasG~iG~~l~~~L~~-~g~~V~~~~   51 (330)
T 2pzm_A           13 GLVPRGSHMRILITGGAGCLGSNLIEHWLP-QGHEILVID   51 (330)
T ss_dssp             -CCSTTTCCEEEEETTTSHHHHHHHHHHGG-GTCEEEEEE
T ss_pred             CCcccCCCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEE
Confidence            344444 47999999999999999999885 478888754

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=95.65  E-value=0.043  Score=53.01  Aligned_cols=135  Identities=13%  Similarity=0.176  Sum_probs=80.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCC------CCC-CeeecCCHHHHHhccc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME------QPL-EIPVMSDLTMVLGSIS  102 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~------~~~-gv~v~~dl~~~l~~~~  102 (303)
                      ..+|+|.|+ |+||+..++.+.+..+..+|++.|+.     ..|-|..++....      ..+ +.. +-+.++++.   
T Consensus       209 g~~vaVqG~-GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~-~~~~~eil~---  283 (415)
T 2tmg_A          209 KATVAVQGF-GNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGE-RITNEELLE---  283 (415)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSE-EECHHHHTT---
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCce-EcCchhhhc---
Confidence            378999997 99999999988754799999999963     3344543332110      011 111 124566765   


Q ss_pred             cCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCCeEEEcCCCc---HHHHHH-HHH
Q 022057          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS---IGSILL-QQA  175 (303)
Q Consensus       103 ~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT--G~~~e~~~~L~~~a~~~~i~vv~a~N~S---iGv~ll-~~~  175 (303)
                        .++||+|.++.+... .+++.   +.+..+|++--  .++++. .++  +. ++|+  ++.|-+.   =||..- .+.
T Consensus       284 --~~~DIliP~A~~n~i~~~~a~---~l~ak~V~EgAN~p~t~~a-~~~--l~-~~Gi--~~~PD~~aNaGGV~~s~~E~  352 (415)
T 2tmg_A          284 --LDVDILVPAALEGAIHAGNAE---RIKAKAVVEGANGPTTPEA-DEI--LS-RRGI--LVVPDILANAGGVTVSYFEW  352 (415)
T ss_dssp             --CSCSEEEECSSTTSBCHHHHT---TCCCSEEECCSSSCBCHHH-HHH--HH-HTTC--EEECHHHHTCHHHHHHHHHH
T ss_pred             --CCCcEEEecCCcCccCcccHH---HcCCeEEEeCCCcccCHHH-HHH--HH-HCCC--EEEChHHHhCCCceEEEEEE
Confidence              689999999866544 44444   55888888765  456543 222  23 4455  4545433   255331 334


Q ss_pred             HHHhccCCCc
Q 022057          176 AISASFHYKN  185 (303)
Q Consensus       176 a~~~~~~~~d  185 (303)
                      .+....++|+
T Consensus       353 vqN~~~~~w~  362 (415)
T 2tmg_A          353 VQDLQSFFWD  362 (415)
T ss_dssp             HHHHTTCCCC
T ss_pred             EecCccccCC
Confidence            4455555565

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=95.62  E-value=0.012  Score=54.63  Aligned_cols=64  Identities=20%  Similarity=0.172  Sum_probs=44.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ..+|+|+|+ |+||+.+++.+.. -+++++ ++|+..  .. ...    ...|+.. .++++++.      .+|+|+...
T Consensus       142 g~~vgIIG~-G~IG~~~A~~l~~-~G~~V~-~~d~~~--~~-~~~----~~~g~~~-~~l~ell~------~aDvVvl~~  204 (313)
T 2ekl_A          142 GKTIGIVGF-GRIGTKVGIIANA-MGMKVL-AYDILD--IR-EKA----EKINAKA-VSLEELLK------NSDVISLHV  204 (313)
T ss_dssp             TCEEEEESC-SHHHHHHHHHHHH-TTCEEE-EECSSC--CH-HHH----HHTTCEE-CCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHH-CCCEEE-EECCCc--ch-hHH----HhcCcee-cCHHHHHh------hCCEEEEec
Confidence            478999998 9999999998874 578876 467643  11 111    1334443 48889884      689999776


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       205 P  205 (313)
T 2ekl_A          205 T  205 (313)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=95.61  E-value=0.04  Score=51.15  Aligned_cols=74  Identities=16%  Similarity=0.108  Sum_probs=43.3

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCeee---cCCHHHHHhccccCCCccE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQSKARAV  109 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v---~~dl~~~l~~~~~~~~~DV  109 (303)
                      ++|||+|+|++|.+|..++..+....- .+|+. +|.+..-..+.++........+..   ++|+++++      .++|+
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l-~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al------~gaDv   79 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHL-YDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAAL------TGMDL   79 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEE-EESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHH------TTCSE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEE-EeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHc------CCCCE
Confidence            468999999779999999998875432 56665 775421001112221101112222   33677777      47999


Q ss_pred             EEEcC
Q 022057          110 VIDFT  114 (303)
Q Consensus       110 vIDfT  114 (303)
                      ||-..
T Consensus        80 Vi~~a   84 (326)
T 1smk_A           80 IIVPA   84 (326)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            98654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.60  E-value=0.036  Score=50.97  Aligned_cols=67  Identities=22%  Similarity=0.317  Sum_probs=42.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCC--CCeeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQP--LEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~~~--~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      .||+|+|+ |.||..++..+.  .+++++ ++|++.  ..+..... +...  .++...+|+++ +      .++|+||.
T Consensus        13 ~~V~vIG~-G~MG~~iA~~la--aG~~V~-v~d~~~--~~~~~~~~~l~~~~~~~i~~~~~~~~-~------~~aDlVie   79 (293)
T 1zej_A           13 MKVFVIGA-GLMGRGIAIAIA--SKHEVV-LQDVSE--KALEAAREQIPEELLSKIEFTTTLEK-V------KDCDIVME   79 (293)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH--TTSEEE-EECSCH--HHHHHHHHHSCGGGGGGEEEESSCTT-G------GGCSEEEE
T ss_pred             CeEEEEee-CHHHHHHHHHHH--cCCEEE-EEECCH--HHHHHHHHHHHHHHhCCeEEeCCHHH-H------cCCCEEEE
Confidence            68999998 999999999888  688866 477542  11111110 0000  14556677765 4      37899988


Q ss_pred             cCC
Q 022057          113 FTD  115 (303)
Q Consensus       113 fT~  115 (303)
                      +.+
T Consensus        80 avp   82 (293)
T 1zej_A           80 AVF   82 (293)
T ss_dssp             CCC
T ss_pred             cCc
Confidence            764

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=95.60  E-value=0.014  Score=53.96  Aligned_cols=60  Identities=20%  Similarity=0.204  Sum_probs=43.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .++|+|+|+ |+||+.+++.+.. -++++.+ +|+... ..           +...+.++++++      ..+|+|+-..
T Consensus       124 g~~vgIIG~-G~IG~~~A~~l~~-~G~~V~~-~dr~~~-~~-----------~~~~~~~l~ell------~~aDvV~l~~  182 (303)
T 1qp8_A          124 GEKVAVLGL-GEIGTRVGKILAA-LGAQVRG-FSRTPK-EG-----------PWRFTNSLEEAL------REARAAVCAL  182 (303)
T ss_dssp             TCEEEEESC-STHHHHHHHHHHH-TTCEEEE-ECSSCC-CS-----------SSCCBSCSHHHH------TTCSEEEECC
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHH-CCCEEEE-ECCCcc-cc-----------CcccCCCHHHHH------hhCCEEEEeC
Confidence            478999997 9999999998874 6788764 676431 10           122356788988      4799999766


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       183 P  183 (303)
T 1qp8_A          183 P  183 (303)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=95.59  E-value=0.032  Score=51.45  Aligned_cols=69  Identities=19%  Similarity=0.200  Sum_probs=42.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc--EEEEEEecCCCC-cchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g-~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |+||+|+|+ |.||..++..+... ++  +|+ .+|.+... ..+.++.... ...+..+.|+++ +      .++|+||
T Consensus        14 ~~kV~ViGa-G~vG~~~a~~l~~~-g~~~ev~-L~Di~~~~~g~a~dl~~~~-~~~i~~t~d~~~-l------~~aD~Vi   82 (303)
T 2i6t_A           14 VNKITVVGG-GELGIACTLAISAK-GIADRLV-LLDLSEGTKGATMDLEIFN-LPNVEISKDLSA-S------AHSKVVI   82 (303)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHH-TCCSEEE-EECCC-----CHHHHHHHT-CTTEEEESCGGG-G------TTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhc-CCCCEEE-EEcCCcchHHHHHHHhhhc-CCCeEEeCCHHH-H------CCCCEEE
Confidence            579999998 99999999888744 44  554 57754210 0111222111 125666778844 4      5899999


Q ss_pred             EcC
Q 022057          112 DFT  114 (303)
Q Consensus       112 DfT  114 (303)
                      ...
T Consensus        83 ~aa   85 (303)
T 2i6t_A           83 FTV   85 (303)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            754

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.58  E-value=0.019  Score=51.02  Aligned_cols=32  Identities=28%  Similarity=0.426  Sum_probs=26.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      |+||.|.|+ |.+|+.+++.+.+ .+.++++...
T Consensus         3 ~~~ilVtGa-G~iG~~l~~~L~~-~g~~V~~~~r   34 (286)
T 3gpi_A            3 LSKILIAGC-GDLGLELARRLTA-QGHEVTGLRR   34 (286)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHH-TTCCEEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-CCCEEEEEeC
Confidence            579999996 9999999999886 4788887654

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.55  E-value=0.03  Score=54.78  Aligned_cols=33  Identities=24%  Similarity=0.268  Sum_probs=27.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      +.||+|+|+ |.||..++..+.. .+++++. +|.+
T Consensus        54 i~kVaVIGa-G~MG~~IA~~la~-aG~~V~l-~D~~   86 (460)
T 3k6j_A           54 VNSVAIIGG-GTMGKAMAICFGL-AGIETFL-VVRN   86 (460)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCeEEE-EECc
Confidence            579999998 9999999998874 5888764 6754

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.54  E-value=0.014  Score=57.34  Aligned_cols=33  Identities=18%  Similarity=0.229  Sum_probs=26.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      +.||+|+|+ |.||..++..+.+ .+++++ ++|++
T Consensus         5 ~~kVgVIGa-G~MG~~IA~~la~-aG~~V~-l~D~~   37 (483)
T 3mog_A            5 VQTVAVIGS-GTMGAGIAEVAAS-HGHQVL-LYDIS   37 (483)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHH-TTCCEE-EECSC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCeEE-EEECC
Confidence            358999998 9999999998874 577766 46754

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=95.54  E-value=0.016  Score=51.61  Aligned_cols=82  Identities=13%  Similarity=0.136  Sum_probs=51.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |||.|.|++|.+|+.+++.+.  .+.++++. ++...      ..    ..++.-.++++++++.    .++|+||.+..
T Consensus         1 m~ilVtGatG~iG~~l~~~L~--~g~~V~~~-~r~~~------~~----~~D~~d~~~~~~~~~~----~~~d~vih~a~   63 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA--PVGNLIAL-DVHSK------EF----CGDFSNPKGVAETVRK----LRPDVIVNAAA   63 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT--TTSEEEEE-CTTCS------SS----CCCTTCHHHHHHHHHH----HCCSEEEECCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh--cCCeEEEe-ccccc------cc----cccCCCHHHHHHHHHh----cCCCEEEECcc
Confidence            489999999999999999888  48888874 44210      00    1111112345556641    24999999753


Q ss_pred             ch------------------hHHHHHHHHHHcCCCeE
Q 022057          116 AS------------------TVYDNVKQATAFGMRSV  134 (303)
Q Consensus       116 p~------------------a~~~~~~~al~~g~~vV  134 (303)
                      +.                  .....++.|.+.|+.+|
T Consensus        64 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v  100 (299)
T 1n2s_A           64 HTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVV  100 (299)
T ss_dssp             CCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEE
T ss_pred             cCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence            21                  13455666767777665

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=95.53  E-value=0.048  Score=49.56  Aligned_cols=33  Identities=21%  Similarity=0.239  Sum_probs=28.1

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      |+++|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~   33 (348)
T 1ek6_A            1 MAEKVLVTGGAGYIGSHTVLELLE-AGYLPVVID   33 (348)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEe
Confidence            567999999999999999999886 478887753

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.53  E-value=0.039  Score=50.01  Aligned_cols=33  Identities=18%  Similarity=0.321  Sum_probs=27.7

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      ++++|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~   36 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLA-HGYDVVIAD   36 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHH-CCCcEEEEe
Confidence            357999999999999999999885 478887643

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=95.52  E-value=0.016  Score=54.68  Aligned_cols=66  Identities=15%  Similarity=0.111  Sum_probs=46.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -++|+|+|+ |+||+.+++.+. .-+++++ ++|+..  .+....    ...|+...++++++++      .+|+|+-..
T Consensus       164 gktvGIIG~-G~IG~~vA~~l~-~~G~~V~-~~dr~~--~~~~~~----~~~g~~~~~~l~ell~------~aDvV~l~~  228 (351)
T 3jtm_A          164 GKTIGTVGA-GRIGKLLLQRLK-PFGCNLL-YHDRLQ--MAPELE----KETGAKFVEDLNEMLP------KCDVIVINM  228 (351)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHG-GGCCEEE-EECSSC--CCHHHH----HHHCCEECSCHHHHGG------GCSEEEECS
T ss_pred             CCEEeEEEe-CHHHHHHHHHHH-HCCCEEE-EeCCCc--cCHHHH----HhCCCeEcCCHHHHHh------cCCEEEECC
Confidence            479999997 999999999887 4588865 467542  111111    1235555678999984      799998665


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       229 P  229 (351)
T 3jtm_A          229 P  229 (351)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=95.49  E-value=0.021  Score=52.80  Aligned_cols=64  Identities=19%  Similarity=0.178  Sum_probs=44.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ..+|+|+|+ |+||+.+++.+.. -++++. ++|+..  .. .. +   ...|+.. .++++++.      .+|+|+...
T Consensus       142 g~~vgIiG~-G~IG~~~A~~l~~-~G~~V~-~~d~~~--~~-~~-~---~~~g~~~-~~l~ell~------~aDvV~l~~  204 (307)
T 1wwk_A          142 GKTIGIIGF-GRIGYQVAKIANA-LGMNIL-LYDPYP--NE-ER-A---KEVNGKF-VDLETLLK------ESDVVTIHV  204 (307)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSSC--CH-HH-H---HHTTCEE-CCHHHHHH------HCSEEEECC
T ss_pred             CceEEEEcc-CHHHHHHHHHHHH-CCCEEE-EECCCC--Ch-hh-H---hhcCccc-cCHHHHHh------hCCEEEEec
Confidence            368999998 9999999998874 578876 467643  11 11 1   1234443 47889884      699999776


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       205 p  205 (307)
T 1wwk_A          205 P  205 (307)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.48  E-value=0.024  Score=57.29  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=27.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      .||.|+|+ |..|..+++.+.. .|+.=+.++|.+
T Consensus       327 arVLIVGa-GGLGs~vA~~La~-aGVG~ItLvD~D  359 (615)
T 4gsl_A          327 TKVLLLGA-GTLGCYVSRALIA-WGVRKITFVDNG  359 (615)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcCC
Confidence            68999999 9999999999884 577666678853

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=95.45  E-value=0.015  Score=55.04  Aligned_cols=67  Identities=9%  Similarity=0.060  Sum_probs=46.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      ..+|+|+|+ |+||+.+++.+.. -+++ +.+ +|+...  ... ..   ...|+....++++++.      .+|+|+..
T Consensus       164 g~tvgIIG~-G~IG~~vA~~l~~-~G~~~V~~-~d~~~~--~~~-~~---~~~g~~~~~~l~ell~------~aDvV~l~  228 (364)
T 2j6i_A          164 GKTIATIGA-GRIGYRVLERLVP-FNPKELLY-YDYQAL--PKD-AE---EKVGARRVENIEELVA------QADIVTVN  228 (364)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHGG-GCCSEEEE-ECSSCC--CHH-HH---HHTTEEECSSHHHHHH------TCSEEEEC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHh-CCCcEEEE-ECCCcc--chh-HH---HhcCcEecCCHHHHHh------cCCEEEEC
Confidence            468999998 9999999998874 5785 654 675421  111 11   1345555678999984      79999987


Q ss_pred             CCc
Q 022057          114 TDA  116 (303)
Q Consensus       114 T~p  116 (303)
                      .+.
T Consensus       229 ~P~  231 (364)
T 2j6i_A          229 APL  231 (364)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=95.33  E-value=0.064  Score=48.33  Aligned_cols=32  Identities=25%  Similarity=0.296  Sum_probs=26.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      |+||.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~   32 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVD-EGLSVVVVD   32 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHh-CCCEEEEEe
Confidence            57999999999999999999885 478888754

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.33  E-value=0.094  Score=48.62  Aligned_cols=71  Identities=15%  Similarity=0.086  Sum_probs=43.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC---C--cchhhhhc-CCCCCCeeecCCHHHHHhccccCCCcc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARA  108 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~---g--~d~~~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (303)
                      ++||+|+|+ |.||..++..+....-++ +..+|.+..   |  .++..... ......+..++|+ +.+      .++|
T Consensus         4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al------~~aD   74 (322)
T 1t2d_A            4 KAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDL------AGAD   74 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGG------TTCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHh------CCCC
Confidence            579999998 999999999887653337 777886431   0  11111100 0012334555788 555      4899


Q ss_pred             EEEEcC
Q 022057          109 VVIDFT  114 (303)
Q Consensus       109 VvIDfT  114 (303)
                      +||...
T Consensus        75 ~Vi~a~   80 (322)
T 1t2d_A           75 VVIVTA   80 (322)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            999764

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=95.33  E-value=0.018  Score=54.28  Aligned_cols=90  Identities=24%  Similarity=0.378  Sum_probs=43.8

Q ss_pred             eecccccccccceEEEeecCCCCC-ceeEEEEcCCcHHHHHHHHHHHhcCCc------EEEEEEecCCC-----Ccchhh
Q 022057           11 RMHHISQNVKAKRFISCSTNPPQS-NIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDSHSV-----GEDIGM   78 (303)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~-~ikV~V~G~~GrMG~~i~~~i~~~~~~------eLvg~vd~~~~-----g~d~~~   78 (303)
                      |.||---|++++     +..|+.| ++||+|+||+|++|+.++-.+...+-+      +|+ .+|.+..     |.. -+
T Consensus         4 ~~~~~~~~~~~~-----~~~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~-L~Di~~~~~~~~Gva-~D   76 (345)
T 4h7p_A            4 HHHHHMGTLEAQ-----TQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELR-LLDIEPALKALAGVE-AE   76 (345)
T ss_dssp             -----------------------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEE-EECCGGGHHHHHHHH-HH
T ss_pred             cccccccccccc-----ccCCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEE-EECCCCccccchhhh-hh
Confidence            445555677777     3445555 599999998899999999887765432      444 5774320     111 11


Q ss_pred             hhcCCCCC--CeeecCCHHHHHhccccCCCccEEEEc
Q 022057           79 VCDMEQPL--EIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        79 ~~g~~~~~--gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      +..+..+.  .+.+.++..+.+      .++|+||-.
T Consensus        77 L~~~~~~~~~~~~~~~~~~~a~------~~advVvi~  107 (345)
T 4h7p_A           77 LEDCAFPLLDKVVVTADPRVAF------DGVAIAIMC  107 (345)
T ss_dssp             HHHTTCTTEEEEEEESCHHHHT------TTCSEEEEC
T ss_pred             hhhcCccCCCcEEEcCChHHHh------CCCCEEEEC
Confidence            11111111  344567777777      478988854

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=95.31  E-value=0.028  Score=52.47  Aligned_cols=66  Identities=17%  Similarity=0.115  Sum_probs=45.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .++|+|+|+ |+||+.+++.+.. -++++. ++|+...  .  +..   ...|+.. .++++++.      ++|+|+...
T Consensus       150 g~~vgIIG~-G~iG~~iA~~l~~-~G~~V~-~~d~~~~--~--~~~---~~~g~~~-~~l~~~l~------~aDvVil~v  212 (334)
T 2dbq_A          150 GKTIGIIGL-GRIGQAIAKRAKG-FNMRIL-YYSRTRK--E--EVE---RELNAEF-KPLEDLLR------ESDFVVLAV  212 (334)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSSCC--H--HHH---HHHCCEE-CCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHh-CCCEEE-EECCCcc--h--hhH---hhcCccc-CCHHHHHh------hCCEEEECC
Confidence            478999997 9999999998874 678876 4676431  1  111   1234433 58888884      689999876


Q ss_pred             Cch
Q 022057          115 DAS  117 (303)
Q Consensus       115 ~p~  117 (303)
                      ++.
T Consensus       213 p~~  215 (334)
T 2dbq_A          213 PLT  215 (334)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.29  E-value=0.097  Score=48.59  Aligned_cols=115  Identities=10%  Similarity=0.083  Sum_probs=63.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cC----C---HHHHHhccccCCC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS----D---LTMVLGSISQSKA  106 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~----d---l~~~l~~~~~~~~  106 (303)
                      +++|.|.|++|.+|+.+++.+.+ .+.++++...... ......+..   ..++.+ ..    |   +++++      ..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~~-~~~~~~l~~---~~~v~~v~~D~l~d~~~l~~~~------~~   73 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAA-VGHHVRAQVHSLK-GLIAEELQA---IPNVTLFQGPLLNNVPLMDTLF------EG   73 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHH-TTCCEEEEESCSC-SHHHHHHHT---STTEEEEESCCTTCHHHHHHHH------TT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-CCCEEEEEECCCC-hhhHHHHhh---cCCcEEEECCccCCHHHHHHHH------hc
Confidence            46899999999999999999886 5788887543221 111111211   112211 11    2   44455      46


Q ss_pred             ccEEEEcCCc------hhHHHHHHHHHHcC-C-CeEEeCCCC---------C--HHHHHHHHHHhhhcCCeEE
Q 022057          107 RAVVIDFTDA------STVYDNVKQATAFG-M-RSVVYVPHI---------Q--LETVSALSAFCDKASMGCL  160 (303)
Q Consensus       107 ~DVvIDfT~p------~a~~~~~~~al~~g-~-~vVigTTG~---------~--~e~~~~L~~~a~~~~i~vv  160 (303)
                      +|+||..+..      ......+..|.+.| + .+|.-++..         +  -......+++.++.++++.
T Consensus        74 ~d~Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~~~~~~~~~~~~y~~sK~~~E~~~~~~gi~~~  146 (352)
T 1xgk_A           74 AHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPST  146 (352)
T ss_dssp             CSEEEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGTSSCCCCTTTHHHHHHHHHHHTSSSCEE
T ss_pred             CCEEEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCccccccCCCCCccHHHHHHHHHHHHHHcCCCEE
Confidence            8999876532      12355667777888 5 455332211         0  1223455666666565543

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.28  E-value=0.11  Score=44.77  Aligned_cols=31  Identities=29%  Similarity=0.334  Sum_probs=26.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCc--EEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAI   67 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~--eLvg~v   67 (303)
                      ++|.|.|++|.+|+.+++.+.+. +.  ++++..
T Consensus        19 ~~vlVtGasg~iG~~l~~~L~~~-G~~~~V~~~~   51 (242)
T 2bka_A           19 KSVFILGASGETGRVLLKEILEQ-GLFSKVTLIG   51 (242)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHH-TCCSEEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHcC-CCCCEEEEEE
Confidence            68999999999999999998864 55  777654

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.25  E-value=0.061  Score=48.03  Aligned_cols=33  Identities=24%  Similarity=0.263  Sum_probs=27.6

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      ||+||.|.|++|.+|+.+++.+.+. +.++++..
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~   38 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVAS-GEEVTVLD   38 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT-TCCEEEEC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHC-CCEEEEEe
Confidence            4689999999999999999998864 77887654

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.22  E-value=0.022  Score=51.27  Aligned_cols=66  Identities=20%  Similarity=0.259  Sum_probs=45.1

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |++|+|+ |+||+.++..+.+ .+.+=+-+++++.  ..+.+++   ..++...++++++.+.      ++|+||..|+
T Consensus       110 ~vliiGa-Gg~a~ai~~~L~~-~G~~~I~v~nR~~--~ka~~la---~~~~~~~~~~~~~~~~------~aDiVInatp  175 (253)
T 3u62_A          110 PVVVVGA-GGAARAVIYALLQ-MGVKDIWVVNRTI--ERAKALD---FPVKIFSLDQLDEVVK------KAKSLFNTTS  175 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHH-TTCCCEEEEESCH--HHHHTCC---SSCEEEEGGGHHHHHH------TCSEEEECSS
T ss_pred             eEEEECc-HHHHHHHHHHHHH-cCCCEEEEEeCCH--HHHHHHH---HHcccCCHHHHHhhhc------CCCEEEECCC
Confidence            8999998 9999999998885 4563344667642  2333333   2344444567777764      7999998774

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=95.21  E-value=0.074  Score=49.11  Aligned_cols=72  Identities=18%  Similarity=0.122  Sum_probs=43.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCeee---cCCHHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v---~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |||+|+|++|.+|..++..+....- .+| ..+|.+..-..+.++........+..   ++|+++++      .++|+||
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev-~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~------~~aDvVv   73 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRL-TLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCL------KGCDVVV   73 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEE-EEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHH------TTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEE-EEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHh------CCCCEEE
Confidence            5999999889999999988875432 354 45776431011112221111112333   25788877      4899998


Q ss_pred             EcC
Q 022057          112 DFT  114 (303)
Q Consensus       112 DfT  114 (303)
                      -..
T Consensus        74 i~a   76 (314)
T 1mld_A           74 IPA   76 (314)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            653

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=95.21  E-value=0.015  Score=54.03  Aligned_cols=89  Identities=9%  Similarity=-0.014  Sum_probs=59.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC-C-CCeeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ-P-LEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~-~-~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ..+|+|+|+ |.||+.+++.+.+..+.+.+.++|++.  ..+..++.... . .++. ++|+++++       ++|+||-
T Consensus       125 ~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~--~~a~~la~~~~~~~~~~~-~~~~~e~v-------~aDvVi~  193 (322)
T 1omo_A          125 SSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVRE--KAAKKFVSYCEDRGISAS-VQPAEEAS-------RCDVLVT  193 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSH--HHHHHHHHHHHHTTCCEE-ECCHHHHT-------SSSEEEE
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHhCCccEEEEECCCH--HHHHHHHHHHHhcCceEE-ECCHHHHh-------CCCEEEE
Confidence            468999998 999999999998766788888898752  22223321000 0 2345 78888875       4899998


Q ss_pred             cCCchhHHHHH-HHHHHcCCCeEEe
Q 022057          113 FTDASTVYDNV-KQATAFGMRSVVY  136 (303)
Q Consensus       113 fT~p~a~~~~~-~~al~~g~~vVig  136 (303)
                      +|+...  +.+ ..+++.|++++.-
T Consensus       194 aTp~~~--pv~~~~~l~~G~~V~~i  216 (322)
T 1omo_A          194 TTPSRK--PVVKAEWVEEGTHINAI  216 (322)
T ss_dssp             CCCCSS--CCBCGGGCCTTCEEEEC
T ss_pred             eeCCCC--ceecHHHcCCCeEEEEC
Confidence            875321  222 2457788888854

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=95.18  E-value=0.038  Score=51.08  Aligned_cols=72  Identities=13%  Similarity=0.188  Sum_probs=49.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |||.|.|++|.+|+.+++.+.+....+++. +|..   .|               .++++++++      ++|+||.+..
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~-~d~~---~d---------------~~~l~~~~~------~~d~Vih~a~   55 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFE-VHRQ---TK---------------EEELESALL------KADFIVHLAG   55 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEE-CCTT---CC---------------HHHHHHHHH------HCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEE-ECCC---CC---------------HHHHHHHhc------cCCEEEECCc
Confidence            589999999999999999998765447765 3431   01               123456663      6899998652


Q ss_pred             --------------chhHHHHHHHHHHcCCC
Q 022057          116 --------------ASTVYDNVKQATAFGMR  132 (303)
Q Consensus       116 --------------p~a~~~~~~~al~~g~~  132 (303)
                                    .......++.|.++|+.
T Consensus        56 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~   86 (369)
T 3st7_A           56 VNRPEHDKEFSLGNVSYLDHVLDILTRNTKK   86 (369)
T ss_dssp             SBCTTCSTTCSSSCCBHHHHHHHHHTTCSSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                          22345677888888854

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=95.18  E-value=0.11  Score=45.36  Aligned_cols=30  Identities=20%  Similarity=0.324  Sum_probs=25.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      |||.|.|++|.+|+.+++.+.+  +.++++..
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~--g~~V~~~~   30 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE--RHEVIKVY   30 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT--TSCEEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHhc--CCeEEEec
Confidence            4899999999999999999883  67877643

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=95.16  E-value=0.055  Score=48.56  Aligned_cols=32  Identities=16%  Similarity=0.230  Sum_probs=24.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      |++|.|.|++|.+|+.+++.+.+. + .++.+.+
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~-g-~~v~~~~   32 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSES-N-EIVVIDN   32 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTT-S-CEEEECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhC-C-CEEEEEc
Confidence            568999999999999999998854 4 5565544

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.14  E-value=0.082  Score=48.79  Aligned_cols=44  Identities=18%  Similarity=0.178  Sum_probs=28.8

Q ss_pred             EEeecCCCCCc---eeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEec
Q 022057           25 ISCSTNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (303)
Q Consensus        25 ~~~~~~~~~~~---ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (303)
                      .+++++|...|   ++|.|.|++|.+|+.+++.+.+.++. ++++ +++
T Consensus         8 ~~~~~~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~-~~r   55 (344)
T 2gn4_A            8 GSMSMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIV-YSR   55 (344)
T ss_dssp             --------CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEE-EES
T ss_pred             CCCCCccHHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEE-EEC
Confidence            35666666443   68999999999999999999876465 7776 444

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.12  E-value=0.068  Score=48.65  Aligned_cols=32  Identities=31%  Similarity=0.375  Sum_probs=27.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      |++|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus        21 ~~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~   52 (333)
T 2q1w_A           21 MKKVFITGICGQIGSHIAELLLE-RGDKVVGID   52 (333)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCEEEEeCCccHHHHHHHHHHHH-CCCEEEEEE
Confidence            57999999999999999999885 478888754

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.11  E-value=0.032  Score=51.57  Aligned_cols=93  Identities=15%  Similarity=0.158  Sum_probs=55.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC-------CCCCeeecCCHHHHHhccccCC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME-------QPLEIPVMSDLTMVLGSISQSK  105 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~-------~~~gv~v~~dl~~~l~~~~~~~  105 (303)
                      +|||+|+|+ |.||..++..+.+ .+.++.. ++++   .....+.  |..       ....+.++++++++       .
T Consensus         3 ~mkI~IiGa-G~~G~~~a~~L~~-~g~~V~~-~~r~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~   69 (335)
T 3ghy_A            3 LTRICIVGA-GAVGGYLGARLAL-AGEAINV-LARG---ATLQALQTAGLRLTEDGATHTLPVRATHDAAAL-------G   69 (335)
T ss_dssp             CCCEEEESC-CHHHHHHHHHHHH-TTCCEEE-ECCH---HHHHHHHHTCEEEEETTEEEEECCEEESCHHHH-------C
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCEEEE-EECh---HHHHHHHHCCCEEecCCCeEEEeeeEECCHHHc-------C
Confidence            479999998 9999999998875 4555553 4442   1111111  100       01123445677764       4


Q ss_pred             CccEEEEcCCchhHHHHHHHHH---HcCCCeEEeCCCC
Q 022057          106 ARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHI  140 (303)
Q Consensus       106 ~~DVvIDfT~p~a~~~~~~~al---~~g~~vVigTTG~  140 (303)
                      ++|+||-++.+..+.+.+....   ..+..+|.-..|+
T Consensus        70 ~~D~Vilavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           70 EQDVVIVAVKAPALESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             CCSEEEECCCHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             CCCEEEEeCCchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            7999998887766666554432   2345566555674

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=95.07  E-value=0.075  Score=48.67  Aligned_cols=32  Identities=19%  Similarity=0.169  Sum_probs=25.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      ++|.|.|++|.+|+.+++.+.+....++++..
T Consensus        47 ~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~   78 (357)
T 2x6t_A           47 RMIIVTGGAGFIGSNIVKALNDKGITDILVVD   78 (357)
T ss_dssp             -CEEEETTTSHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            68999999999999999998865327777643

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.02  E-value=0.032  Score=52.04  Aligned_cols=74  Identities=19%  Similarity=0.164  Sum_probs=41.8

Q ss_pred             CCCC-ceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhhhhc-CCCCCCeeecCCHHHHHhccc
Q 022057           31 PPQS-NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSIS  102 (303)
Q Consensus        31 ~~~~-~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~---g--~d~~~~~g-~~~~~gv~v~~dl~~~l~~~~  102 (303)
                      |..| ++||+|+|+ |.||..++..+... ++ +|+ .+|.+..   |  .|+..... ......+..++|+ +.+    
T Consensus         2 ~~~m~~~kI~viGa-G~vG~~~a~~l~~~-~~~~v~-L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~----   73 (324)
T 3gvi_A            2 PGSMARNKIALIGS-GMIGGTLAHLAGLK-ELGDVV-LFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAI----   73 (324)
T ss_dssp             ----CCCEEEEECC-SHHHHHHHHHHHHT-TCCEEE-EECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGG----
T ss_pred             CCCCcCCEEEEECC-CHHHHHHHHHHHhC-CCCeEE-EEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHH----
Confidence            5566 579999998 99999999887754 44 654 5775421   1  11111100 0012234445777 455    


Q ss_pred             cCCCccEEEEcC
Q 022057          103 QSKARAVVIDFT  114 (303)
Q Consensus       103 ~~~~~DVvIDfT  114 (303)
                        .++|+||-..
T Consensus        74 --~~aDiVIiaa   83 (324)
T 3gvi_A           74 --EGADVVIVTA   83 (324)
T ss_dssp             --TTCSEEEECC
T ss_pred             --CCCCEEEEcc
Confidence              5899998654

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.02  E-value=0.068  Score=49.67  Aligned_cols=71  Identities=21%  Similarity=0.232  Sum_probs=44.3

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhhhhc-CCCCCCeeecCCHHHHHhccccCCC
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKA  106 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~---g--~d~~~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~  106 (303)
                      |++||+|+|+ |.||..++..+... ++ + +..+|.+..   +  .+...... ......+..++|+ +.+      .+
T Consensus        13 ~~~kI~ViGa-G~vG~~iA~~la~~-g~~~-V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al------~~   82 (328)
T 2hjr_A           13 MRKKISIIGA-GQIGSTIALLLGQK-DLGD-VYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYL------QN   82 (328)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHT-TCCE-EEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGG------TT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhC-CCCe-EEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHH------CC
Confidence            4579999998 99999999887754 55 7 667886431   1  01111100 0012235556788 555      48


Q ss_pred             ccEEEEcC
Q 022057          107 RAVVIDFT  114 (303)
Q Consensus       107 ~DVvIDfT  114 (303)
                      +|+||...
T Consensus        83 aD~VI~av   90 (328)
T 2hjr_A           83 SDVVIITA   90 (328)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEcC
Confidence            99999765

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=94.99  E-value=0.077  Score=49.80  Aligned_cols=95  Identities=12%  Similarity=0.105  Sum_probs=54.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCeeec-C
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIPVM-S   92 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~~~-----~~g~~~~~gv~v~-~   92 (303)
                      ..||.|+|+ |..|..+++.+.. .|+.=+-++|.+.                .|+.-.+     +..+.....+..+ .
T Consensus        36 ~~~VlivG~-GGlG~~ia~~La~-~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~  113 (346)
T 1y8q_A           36 ASRVLLVGL-KGLGAEIAKNLIL-AGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTE  113 (346)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-HTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHH-cCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEec
Confidence            368999998 9999999999884 5665555676421                1111100     1111011112221 1


Q ss_pred             C----HHHHHhccccCCCccEEEEcCC-chhHHHHHHHHHHcCCCeEEeC
Q 022057           93 D----LTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV  137 (303)
Q Consensus        93 d----l~~~l~~~~~~~~~DVvIDfT~-p~a~~~~~~~al~~g~~vVigT  137 (303)
                      +    .++.+      .++|+|||++. ++.-...-..|.++++|+|.+-
T Consensus       114 ~~~~~~~~~~------~~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~~  157 (346)
T 1y8q_A          114 DIEKKPESFF------TQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGD  157 (346)
T ss_dssp             CGGGCCHHHH------TTCSEEEEESCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCcchHHHh------cCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence            2    24455      36788888774 3444555567778888888653

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.97  E-value=0.066  Score=50.41  Aligned_cols=33  Identities=30%  Similarity=0.427  Sum_probs=26.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ..||.|+|+ |..|..+++.+.. .++.=+.++|.
T Consensus       118 ~~~VlvvG~-GglGs~va~~La~-aGvg~i~lvD~  150 (353)
T 3h5n_A          118 NAKVVILGC-GGIGNHVSVILAT-SGIGEIILIDN  150 (353)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-HTCSEEEEEEC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHh-CCCCeEEEECC
Confidence            368999998 9999999998885 46655567775

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=94.96  E-value=0.11  Score=47.49  Aligned_cols=32  Identities=22%  Similarity=0.193  Sum_probs=27.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      |++|.|.|++|.+|+.+++.+.+. +.+++++.
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~   58 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKL-DQKVVGLD   58 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHC-CCEEEEEe
Confidence            579999999999999999998864 78888754

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=94.95  E-value=0.068  Score=49.32  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=27.9

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      ||++|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus        23 M~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   56 (375)
T 1t2a_A           23 MRNVALITGITGQDGSYLAEFLLE-KGYEVHGIVR   56 (375)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             cCcEEEEECCCchHHHHHHHHHHH-CCCEEEEEEC
Confidence            346899999999999999999886 4788887543

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=94.92  E-value=0.03  Score=56.53  Aligned_cols=32  Identities=28%  Similarity=0.355  Sum_probs=26.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      .||.|+|+ |..|..+++.+. ..|+.=+.++|.
T Consensus       328 ~kVLIVGa-GGLGs~va~~La-~aGVG~ItLvD~  359 (598)
T 3vh1_A          328 TKVLLLGA-GTLGCYVSRALI-AWGVRKITFVDN  359 (598)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-TTTCCEEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHH-HcCCCEEEEECC
Confidence            68999999 999999999888 467766667874

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=94.90  E-value=0.098  Score=48.14  Aligned_cols=46  Identities=22%  Similarity=0.193  Sum_probs=28.3

Q ss_pred             ceEEEeecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           22 KRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        22 ~~~~~~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ++++....|..-...||.|+|+ |..|..+++.+.. .++-=+.++|.
T Consensus        23 ~~~G~~~~q~kL~~~~VlVvGa-GGlGs~va~~La~-aGVG~i~lvD~   68 (292)
T 3h8v_A           23 KRMGIVSDYEKIRTFAVAIVGV-GGVGSVTAEMLTR-CGIGKLLLFDY   68 (292)
T ss_dssp             ---------CGGGGCEEEEECC-SHHHHHHHHHHHH-HTCSEEEEECC
T ss_pred             cccChHHHHHHHhCCeEEEECc-CHHHHHHHHHHHH-cCCCEEEEECC
Confidence            4555544444434579999998 9999999998885 46555567775

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=94.89  E-value=0.058  Score=48.81  Aligned_cols=32  Identities=16%  Similarity=0.199  Sum_probs=27.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      |+||.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~   32 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALS-QGIDLIVFD   32 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CcEEEEeCCCchhHHHHHHHHHh-CCCEEEEEe
Confidence            46899999999999999999885 578888754

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=94.85  E-value=0.047  Score=49.96  Aligned_cols=71  Identities=18%  Similarity=0.160  Sum_probs=41.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhh---c--C-CCCCCeee-cCCHHHHHhccccCCC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVC---D--M-EQPLEIPV-MSDLTMVLGSISQSKA  106 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~---g--~-~~~~gv~v-~~dl~~~l~~~~~~~~  106 (303)
                      |+||+|+|+ |.||..++..+....- .+++ ++|++.  ..+..+.   +  . .....+.+ .+|+ +.+      .+
T Consensus         1 m~kI~VIGa-G~~G~~la~~L~~~g~~~~V~-l~d~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~------~~   69 (309)
T 1hyh_A            1 ARKIGIIGL-GNVGAAVAHGLIAQGVADDYV-FIDANE--AKVKADQIDFQDAMANLEAHGNIVINDW-AAL------AD   69 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSH--HHHHHHHHHHHHHGGGSSSCCEEEESCG-GGG------TT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEcCCH--HHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHh------CC
Confidence            479999997 9999999998876531 4554 566532  1111110   0  0 00112344 4677 444      47


Q ss_pred             ccEEEEcCCc
Q 022057          107 RAVVIDFTDA  116 (303)
Q Consensus       107 ~DVvIDfT~p  116 (303)
                      +|+||-+..+
T Consensus        70 aDvViiav~~   79 (309)
T 1hyh_A           70 ADVVISTLGN   79 (309)
T ss_dssp             CSEEEECCSC
T ss_pred             CCEEEEecCC
Confidence            9999977654

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=94.76  E-value=0.1  Score=46.35  Aligned_cols=90  Identities=13%  Similarity=0.132  Sum_probs=51.8

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCeee--cCCHHHHHhccccCC----CccE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSK----ARAV  109 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~----~~DV  109 (303)
                      ||.|.|++|.+|+.+++.+.+. + .+++++ ++.........+.+.  .....+  .++++++++     .    ++|+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~-g~~~V~~~-~r~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~-----~~~~~~~d~   71 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDK-GITDILVV-DNLKDGTKFVNLVDL--NIADYMDKEDFLIQIMA-----GEEFGDVEA   71 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTT-TCCCEEEE-ECCSSGGGGHHHHTS--CCSEEEEHHHHHHHHHT-----TCCCSSCCE
T ss_pred             CEEEEcCccHHHHHHHHHHHHC-CCcEEEEE-ccCCCCchhhhcCcc--eeccccccHHHHHHHHh-----ccccCCCcE
Confidence            5899999999999999998865 5 777764 443211111112211  111111  123444442     2    5999


Q ss_pred             EEEcCCch----------------hHHHHHHHHHHcCCCeEE
Q 022057          110 VIDFTDAS----------------TVYDNVKQATAFGMRSVV  135 (303)
Q Consensus       110 vIDfT~p~----------------a~~~~~~~al~~g~~vVi  135 (303)
                      ||.+..+.                .....++.|.++|+.+|.
T Consensus        72 vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~  113 (310)
T 1eq2_A           72 IFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLY  113 (310)
T ss_dssp             EEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEE
T ss_pred             EEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence            99875321                134566777777876653

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=94.76  E-value=0.049  Score=52.99  Aligned_cols=135  Identities=15%  Similarity=0.090  Sum_probs=78.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCC------CC-CeeecCCHHHHHhccc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ------PL-EIPVMSDLTMVLGSIS  102 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~~------~~-gv~v~~dl~~~l~~~~  102 (303)
                      -.||+|.|+ |++|+..++.+.+ .+..+|++.|+.     ..|-|..++.....      .+ +.. +-+.++++.   
T Consensus       235 g~~vaVqGf-GnVG~~~a~~L~e-~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~-~i~~~ei~~---  308 (440)
T 3aog_A          235 GARVAIQGF-GNVGNAAARAFHD-HGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAE-PLPAADFWG---  308 (440)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSE-ECCHHHHTT---
T ss_pred             CCEEEEecc-CHHHHHHHHHHHH-CCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCce-EcCchhhhc---
Confidence            378999997 9999999998774 689999999963     33445443321110      11 111 224566664   


Q ss_pred             cCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCCeEEEcCCCcH---HHHHH-HHH
Q 022057          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI---GSILL-QQA  175 (303)
Q Consensus       103 ~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT--G~~~e~~~~L~~~a~~~~i~vv~a~N~Si---Gv~ll-~~~  175 (303)
                        .++||+|.++.+... .+++.   +.+..+|++--  .++++. .++.   +++|+  ++.|-+..   ||..- .+.
T Consensus       309 --~~~DIlvPcA~~n~i~~~na~---~l~ak~VvEgAN~p~t~eA-~~iL---~~~GI--~~~PD~~aNaGGV~vS~~E~  377 (440)
T 3aog_A          309 --LPVEFLVPAALEKQITEQNAW---RIRARIVAEGANGPTTPAA-DDIL---LEKGV--LVVPDVIANAGGVTVSYFEW  377 (440)
T ss_dssp             --CCCSEEEECSSSSCBCTTTGG---GCCCSEEECCSSSCBCHHH-HHHH---HHHTC--EEECHHHHTTHHHHHHHHHH
T ss_pred             --CCCcEEEecCCcCccchhhHH---HcCCcEEEecCccccCHHH-HHHH---HHCCC--EEEChHHHhCCCceEEEEEE
Confidence              589999999865443 44444   34888888765  355543 3332   34445  55554432   44321 333


Q ss_pred             HHHhccCCCcE
Q 022057          176 AISASFHYKNV  186 (303)
Q Consensus       176 a~~~~~~~~di  186 (303)
                      .+.+..++|+-
T Consensus       378 ~qN~~~~~w~~  388 (440)
T 3aog_A          378 VQDFNSYFWTE  388 (440)
T ss_dssp             HHHTTTCCCCH
T ss_pred             EecCccCcCCH
Confidence            44555555553

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=94.75  E-value=0.086  Score=51.55  Aligned_cols=34  Identities=26%  Similarity=0.380  Sum_probs=28.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ||||.|.|++|.+|+.+++.+.+ .+.++++....
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~-~G~~V~~l~R~  180 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQT-GGHEVIQLVRK  180 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECC
Confidence            68999999999999999999885 47888876543

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=94.74  E-value=0.19  Score=45.80  Aligned_cols=32  Identities=28%  Similarity=0.333  Sum_probs=27.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      |||.|.|++|.+|+.+++.+.+..+.++++..
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~   32 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNID   32 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCCeEEEEe
Confidence            48999999999999999999876578888754

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=94.74  E-value=0.49  Score=42.63  Aligned_cols=32  Identities=19%  Similarity=0.194  Sum_probs=26.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhc--CC---cEEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKA--RG---MEVAGAI   67 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~--~~---~eLvg~v   67 (303)
                      |||.|.|++|.+|+.+++.+.+.  ++   .++++..
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~   37 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLD   37 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEE
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEE
Confidence            48999999999999999999864  26   8888754

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=94.74  E-value=0.043  Score=50.93  Aligned_cols=65  Identities=15%  Similarity=0.127  Sum_probs=45.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec-CCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~-~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      ..+|+|+|+ |+||+.+++.+. .-+++++ ++|+ ...  . .. +   ...|+...+++++++.      .+|+|+..
T Consensus       146 g~~vgIIG~-G~IG~~~A~~l~-~~G~~V~-~~d~~~~~--~-~~-~---~~~g~~~~~~l~ell~------~aDvVil~  209 (320)
T 1gdh_A          146 NKTLGIYGF-GSIGQALAKRAQ-GFDMDID-YFDTHRAS--S-SD-E---ASYQATFHDSLDSLLS------VSQFFSLN  209 (320)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-TTTCEEE-EECSSCCC--H-HH-H---HHHTCEECSSHHHHHH------HCSEEEEC
T ss_pred             CCEEEEECc-CHHHHHHHHHHH-HCCCEEE-EECCCCcC--h-hh-h---hhcCcEEcCCHHHHHh------hCCEEEEe
Confidence            368999998 999999999887 4578876 4676 431  1 11 1   1234555558999884      68999977


Q ss_pred             CC
Q 022057          114 TD  115 (303)
Q Consensus       114 T~  115 (303)
                      .+
T Consensus       210 ~p  211 (320)
T 1gdh_A          210 AP  211 (320)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=94.73  E-value=0.043  Score=52.62  Aligned_cols=66  Identities=18%  Similarity=0.099  Sum_probs=45.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -++|+|+|+ |+||+.+++.+.. -++++.+ +|+.....+   ..   ...|+..+.++++++.      .+|+|+...
T Consensus       191 gktvGIIGl-G~IG~~vA~~l~a-~G~~V~~-~d~~~~~~~---~~---~~~G~~~~~~l~ell~------~aDvV~l~~  255 (393)
T 2nac_A          191 AMHVGTVAA-GRIGLAVLRRLAP-FDVHLHY-TDRHRLPES---VE---KELNLTWHATREDMYP------VCDVVTLNC  255 (393)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHGG-GTCEEEE-ECSSCCCHH---HH---HHHTCEECSSHHHHGG------GCSEEEECS
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHh-CCCEEEE-EcCCccchh---hH---hhcCceecCCHHHHHh------cCCEEEEec
Confidence            368999998 9999999998774 5788764 665421111   11   1235555578999884      799999776


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       256 P  256 (393)
T 2nac_A          256 P  256 (393)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=94.72  E-value=0.037  Score=52.83  Aligned_cols=90  Identities=20%  Similarity=0.270  Sum_probs=54.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCeee--cCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ..+|+|+|+ |.||+.+++.+... ++ +++ +++++.  ..+.+++   ..+|..+  ++++++++.      .+|+||
T Consensus       167 g~~VlIiGa-G~iG~~~a~~l~~~-G~~~V~-v~~r~~--~ra~~la---~~~g~~~~~~~~l~~~l~------~aDvVi  232 (404)
T 1gpj_A          167 DKTVLVVGA-GEMGKTVAKSLVDR-GVRAVL-VANRTY--ERAVELA---RDLGGEAVRFDELVDHLA------RSDVVV  232 (404)
T ss_dssp             TCEEEEESC-CHHHHHHHHHHHHH-CCSEEE-EECSSH--HHHHHHH---HHHTCEECCGGGHHHHHH------TCSEEE
T ss_pred             CCEEEEECh-HHHHHHHHHHHHHC-CCCEEE-EEeCCH--HHHHHHH---HHcCCceecHHhHHHHhc------CCCEEE
Confidence            368999998 99999999988754 66 554 466542  1222222   1223322  456777773      799999


Q ss_pred             EcCCchh-H--HHHHHH-HHH---cCCCeEEeCC
Q 022057          112 DFTDAST-V--YDNVKQ-ATA---FGMRSVVYVP  138 (303)
Q Consensus       112 DfT~p~a-~--~~~~~~-al~---~g~~vVigTT  138 (303)
                      ++|.... .  .+.+.. +++   .+.-++++..
T Consensus       233 ~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia  266 (404)
T 1gpj_A          233 SATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  266 (404)
T ss_dssp             ECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             EccCCCCceecHHHHHHHHHhccCCCCEEEEEcc
Confidence            9984322 2  244444 343   2445666654

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=94.70  E-value=0.31  Score=43.37  Aligned_cols=84  Identities=15%  Similarity=0.135  Sum_probs=52.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  .+..++               .+.+..  ...++. +..|.+
T Consensus        45 k~vlITGasggIG~~la~~L~~-~G~~V~~-~~r~~--~~~~~~---------------~~~l~~--~~~~~~~~~~Dl~  103 (285)
T 2c07_A           45 KVALVTGAGRGIGREIAKMLAK-SVSHVIC-ISRTQ--KSCDSV---------------VDEIKS--FGYESSGYAGDVS  103 (285)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTT-TSSEEEE-EESSH--HHHHHH---------------HHHHHT--TTCCEEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-cCCEEEE-EcCCH--HHHHHH---------------HHHHHh--cCCceeEEECCCC
Confidence            4799999999999999998874 5788877 55431  111111               111110  001222 345888


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++|+-..|.
T Consensus       104 d~~~v~~~~~~~~~~~~~id~li~~Ag~  131 (285)
T 2c07_A          104 KKEEISEVINKILTEHKNVDILVNNAGI  131 (285)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            888887777666553  58888877653

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.63  E-value=0.2  Score=48.78  Aligned_cols=124  Identities=10%  Similarity=0.047  Sum_probs=69.2

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-------CCc------chhhhhcC-CCCCCeeecCCHHHHHh
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VGE------DIGMVCDM-EQPLEIPVMSDLTMVLG   99 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------~g~------d~~~~~g~-~~~~gv~v~~dl~~~l~   99 (303)
                      .|-+|+|+|. |.||-.++-.++ ..+++++| +|.+.       .|+      .+.++... -.......++|.++++.
T Consensus        20 ~m~~IaViGl-GYVGLp~A~~~A-~~G~~V~g-~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~   96 (444)
T 3vtf_A           20 HMASLSVLGL-GYVGVVHAVGFA-LLGHRVVG-YDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVA   96 (444)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHH-HHTCEEEE-ECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHH
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHH-hCCCcEEE-EECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHh
Confidence            3679999997 999999888776 45888887 56421       011      11111100 01223556778888774


Q ss_pred             ccccCCCccEEEEcC-Cc------------hhHHHHHHHHHH---cCCCeEEeCC---CCCHHHHHHH-HHHhhhcCCeE
Q 022057          100 SISQSKARAVVIDFT-DA------------STVYDNVKQATA---FGMRSVVYVP---HIQLETVSAL-SAFCDKASMGC  159 (303)
Q Consensus       100 ~~~~~~~~DVvIDfT-~p------------~a~~~~~~~al~---~g~~vVigTT---G~~~e~~~~L-~~~a~~~~i~v  159 (303)
                            .+|+++.+- +|            +.+.+.+...++   .|.=||+.+|   |.+++....+ ++........+
T Consensus        97 ------~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v  170 (444)
T 3vtf_A           97 ------ATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSV  170 (444)
T ss_dssp             ------TSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEE
T ss_pred             ------cCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCcee
Confidence                  688877652 22            122333333344   2445666666   7877644333 22222223667


Q ss_pred             EEcCCCc
Q 022057          160 LIAPTLS  166 (303)
Q Consensus       160 v~a~N~S  166 (303)
                      .++|=|-
T Consensus       171 ~~~PErl  177 (444)
T 3vtf_A          171 ASNPEFL  177 (444)
T ss_dssp             EECCCCC
T ss_pred             ecCcccc
Confidence            7777664

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=94.63  E-value=0.084  Score=50.69  Aligned_cols=62  Identities=23%  Similarity=0.086  Sum_probs=44.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|||+|. |+||+.+++.+. .-++++++ +|+... ..         ..++....++++++.      .+|+|+-..
T Consensus       145 gktlGiIGl-G~IG~~vA~~l~-~~G~~V~~-~d~~~~-~~---------~~~~~~~~~l~ell~------~aDvV~l~~  205 (404)
T 1sc6_A          145 GKKLGIIGY-GHIGTQLGILAE-SLGMYVYF-YDIENK-LP---------LGNATQVQHLSDLLN------MSDVVSLHV  205 (404)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-HTTCEEEE-ECSSCC-CC---------CTTCEECSCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEeE-CHHHHHHHHHHH-HCCCEEEE-EcCCch-hc---------cCCceecCCHHHHHh------cCCEEEEcc
Confidence            368999997 999999999877 46899764 776421 00         112445568999985      689998765


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       206 P  206 (404)
T 1sc6_A          206 P  206 (404)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=94.63  E-value=0.078  Score=46.85  Aligned_cols=33  Identities=15%  Similarity=0.194  Sum_probs=26.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      |.+|.|.|++|.+|+.+++.+.+ .+.+++. +++
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~-~G~~V~~-~~r   35 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAP-MAEILRL-ADL   35 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGG-GEEEEEE-EES
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-cCCEEEE-Eec
Confidence            46799999999999999998875 4677765 444

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=94.63  E-value=0.081  Score=49.79  Aligned_cols=63  Identities=17%  Similarity=0.141  Sum_probs=45.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .+|+|+|. |+||+.+++.+. .-++++.+ +|+..  .+.. ..     .++...++++++++      .+|+|+-..+
T Consensus       174 ktvGIIGl-G~IG~~vA~~l~-~~G~~V~~-~dr~~--~~~~-~~-----~g~~~~~~l~ell~------~sDvV~l~~P  236 (345)
T 4g2n_A          174 RRLGIFGM-GRIGRAIATRAR-GFGLAIHY-HNRTR--LSHA-LE-----EGAIYHDTLDSLLG------ASDIFLIAAP  236 (345)
T ss_dssp             CEEEEESC-SHHHHHHHHHHH-TTTCEEEE-ECSSC--CCHH-HH-----TTCEECSSHHHHHH------TCSEEEECSC
T ss_pred             CEEEEEEe-ChhHHHHHHHHH-HCCCEEEE-ECCCC--cchh-hh-----cCCeEeCCHHHHHh------hCCEEEEecC
Confidence            68999997 999999999887 46898775 77642  1111 11     14455579999995      7999987654

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.61  E-value=0.17  Score=46.46  Aligned_cols=70  Identities=16%  Similarity=0.095  Sum_probs=42.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecCCCCcch--hhhhc----CCCCCCeeecCCHHHHHhccccCCCc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDI--GMVCD----MEQPLEIPVMSDLTMVLGSISQSKAR  107 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~--~~~~g----~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (303)
                      ++||+|+|+ |.||..++..+... ++ + +..+|.+..-.+.  .++..    ......+..++|+ +.+      .++
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la~~-g~~~-V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~------~~a   73 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVGKD-NLAD-VVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADI------SGS   73 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHH-TCCE-EEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGG------TTC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCce-EEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHh------CCC
Confidence            579999998 99999999988754 55 7 5667764310000  00000    0012234555777 455      479


Q ss_pred             cEEEEcC
Q 022057          108 AVVIDFT  114 (303)
Q Consensus       108 DVvIDfT  114 (303)
                      |+||...
T Consensus        74 DiVi~av   80 (317)
T 2ewd_A           74 DVVIITA   80 (317)
T ss_dssp             SEEEECC
T ss_pred             CEEEEeC
Confidence            9999765

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=94.60  E-value=0.13  Score=50.43  Aligned_cols=137  Identities=12%  Similarity=0.135  Sum_probs=83.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec-----CCCCc---chhhhhcCCCC-----------C-CeeecCCH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGE---DIGMVCDMEQP-----------L-EIPVMSDL   94 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~---d~~~~~g~~~~-----------~-gv~v~~dl   94 (303)
                      -.+|+|-|+ |++|+..++.+. +.+..+|++.|+     +..|-   |+..+......           + +....+ .
T Consensus       252 g~~vaVqG~-GnVG~~~a~~L~-~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v~-~  328 (470)
T 2bma_A          252 KQTAVVSGS-GNVALYCVQKLL-HLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFP-N  328 (470)
T ss_dssp             GCEEEEECS-SHHHHHHHHHHH-HTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEECS-S
T ss_pred             CCEEEEECC-cHHHHHHHHHHH-HCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEec-C
Confidence            368999997 999999999887 469999999995     23354   33222111000           0 222222 1


Q ss_pred             HHHHhccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCCeEEEcCCCcH---H
Q 022057           95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI---G  168 (303)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT--G~~~e~~~~L~~~a~~~~i~vv~a~N~Si---G  168 (303)
                      ++++.     .++||++-+..+... .+++....+++..+|++--  .++++..   +. -+++|  +++.|-+..   |
T Consensus       329 ~~~~~-----~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA~---~~-L~~rG--Il~~PD~~aNAGG  397 (470)
T 2bma_A          329 EKPWG-----VPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAI---NL-FKSNN--IIYCPSKAANAGG  397 (470)
T ss_dssp             CCTTS-----SCCSEEEECSSTTCBCSHHHHHHHHTTCCEEECCSSSCBCHHHH---HH-HHHTT--CEEECHHHHTTHH
T ss_pred             cCeee-----cCccEEEeccccCcCCHHHHHHHHhcCcEEEEeCCCCCCCHHHH---HH-HHHCC--cEEEChHHhhCCC
Confidence            34443     589999998866555 7888888889999999865  3555442   22 34444  466665443   4


Q ss_pred             HHHH-HHHHHHhccCCCc
Q 022057          169 SILL-QQAAISASFHYKN  185 (303)
Q Consensus       169 v~ll-~~~a~~~~~~~~d  185 (303)
                      |..- .+..+.+..+.|+
T Consensus       398 V~~S~~E~~qn~~~~~w~  415 (470)
T 2bma_A          398 VAISGLEMSQNFQFSHWT  415 (470)
T ss_dssp             HHHHHHHHHHHHTTCCCC
T ss_pred             ceeeHHHhhccccccCCC
Confidence            4321 3344445555564

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=94.60  E-value=0.041  Score=49.23  Aligned_cols=32  Identities=28%  Similarity=0.403  Sum_probs=28.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      |||.|.|++|-+|+.+++.+.+ .++++++...
T Consensus         1 MkILVTGatGfIG~~L~~~L~~-~G~~V~~l~R   32 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNA-RGHEVTLVSR   32 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEEC
Confidence            7899999999999999998874 6899988653

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=94.59  E-value=0.043  Score=50.39  Aligned_cols=61  Identities=18%  Similarity=0.065  Sum_probs=44.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|+ |+||+.+++.+.. -++++.+ +|+..  ...         ..+...++++++++      .+|+|+-..
T Consensus       122 g~tvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~dr~~--~~~---------~~~~~~~~l~ell~------~aDiV~l~~  181 (290)
T 3gvx_A          122 GKALGILGY-GGIGRRVAHLAKA-FGMRVIA-YTRSS--VDQ---------NVDVISESPADLFR------QSDFVLIAI  181 (290)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-HTCEEEE-ECSSC--CCT---------TCSEECSSHHHHHH------HCSEEEECC
T ss_pred             cchheeecc-CchhHHHHHHHHh-hCcEEEE-Eeccc--ccc---------ccccccCChHHHhh------ccCeEEEEe
Confidence            379999998 9999999998874 5888876 56542  110         11334568999985      699998765


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       182 P  182 (290)
T 3gvx_A          182 P  182 (290)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.57  E-value=0.11  Score=47.88  Aligned_cols=88  Identities=18%  Similarity=0.076  Sum_probs=50.0

Q ss_pred             ceeEEEEcCCcHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeec--CCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |+||.++|. |++|.. +++.+. +.+.++.+ .|..........+.    +.|++++  .+.+.+.+     .++|+||
T Consensus         4 ~~~i~~iGi-Gg~Gms~~A~~L~-~~G~~V~~-~D~~~~~~~~~~L~----~~gi~v~~g~~~~~l~~-----~~~d~vV   71 (326)
T 3eag_A            4 MKHIHIIGI-GGTFMGGLAAIAK-EAGFEVSG-CDAKMYPPMSTQLE----ALGIDVYEGFDAAQLDE-----FKADVYV   71 (326)
T ss_dssp             CCEEEEESC-CSHHHHHHHHHHH-HTTCEEEE-EESSCCTTHHHHHH----HTTCEEEESCCGGGGGS-----CCCSEEE
T ss_pred             CcEEEEEEE-CHHHHHHHHHHHH-hCCCEEEE-EcCCCCcHHHHHHH----hCCCEEECCCCHHHcCC-----CCCCEEE
Confidence            579999998 999996 777555 67888775 77542111112222    3466664  34444421     2589888


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeE
Q 022057          112 DFTDASTVYDNVKQATAFGMRSV  134 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vV  134 (303)
                      -.+.-....+.+..|.++|+|++
T Consensus        72 ~Spgi~~~~p~~~~a~~~gi~v~   94 (326)
T 3eag_A           72 IGNVAKRGMDVVEAILNLGLPYI   94 (326)
T ss_dssp             ECTTCCTTCHHHHHHHHTTCCEE
T ss_pred             ECCCcCCCCHHHHHHHHcCCcEE
Confidence            54321112333455556666554

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=94.47  E-value=0.23  Score=44.77  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=27.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAI   67 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~v   67 (303)
                      |||.|.|++|.+|+.+++.+.+.. +.++++..
T Consensus         4 m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~   36 (336)
T 2hun_A            4 MKLLVTGGMGFIGSNFIRYILEKHPDWEVINID   36 (336)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CeEEEECCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence            689999999999999999998754 58888754

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=94.47  E-value=0.11  Score=51.61  Aligned_cols=100  Identities=13%  Similarity=0.066  Sum_probs=59.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCeee-cCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIPV-MSD   93 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~~~-----~~g~~~~~gv~v-~~d   93 (303)
                      .||.|+|+ |..|..+++.+. ..|+.=+.++|.+.                .|+.-.+     +..+.....+.. ..+
T Consensus        33 ~~VlvvG~-GGlGseiak~La-~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~~~~  110 (531)
T 1tt5_A           33 AHVCLINA-TATGTEILKNLV-LPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEES  110 (531)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-TTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEESSC
T ss_pred             CeEEEECc-CHHHHHHHHHHH-HcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence            68999998 999999999988 56776666787421                1211111     111111112222 234


Q ss_pred             HHHHHhcc-ccCCCccEEEEcCC-chhHHHHHHHHHHcCCCeEEeC
Q 022057           94 LTMVLGSI-SQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV  137 (303)
Q Consensus        94 l~~~l~~~-~~~~~~DVvIDfT~-p~a~~~~~~~al~~g~~vVigT  137 (303)
                      +++.++.. .--.++|+|||++. ++.-......|.++++|+|.+-
T Consensus       111 ~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~~  156 (531)
T 1tt5_A          111 PENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICR  156 (531)
T ss_dssp             HHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence            44321100 00036899999985 4444666688999999999873

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=94.45  E-value=0.083  Score=44.37  Aligned_cols=34  Identities=15%  Similarity=0.230  Sum_probs=27.4

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAI   67 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~v   67 (303)
                      |++||.|.|++|.+|+.+++.+.+.... ++++..
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~   38 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPA   38 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCB
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEe
Confidence            5679999999999999999999875432 777643

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=94.44  E-value=0.05  Score=51.34  Aligned_cols=65  Identities=14%  Similarity=0.027  Sum_probs=46.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|. |+||+.+++.+.. -++++++ +|+..   +....    ...|+...+++++++.      .+|+|+-..
T Consensus       160 g~tvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~---~~~~~----~~~g~~~~~~l~ell~------~aDiV~l~~  223 (352)
T 3gg9_A          160 GQTLGIFGY-GKIGQLVAGYGRA-FGMNVLV-WGREN---SKERA----RADGFAVAESKDALFE------QSDVLSVHL  223 (352)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSHH---HHHHH----HHTTCEECSSHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHh-CCCEEEE-ECCCC---CHHHH----HhcCceEeCCHHHHHh------hCCEEEEec
Confidence            368999997 9999999998874 5898775 66531   11111    1345666679999985      689998765


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       224 P  224 (352)
T 3gg9_A          224 R  224 (352)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=94.39  E-value=0.09  Score=49.02  Aligned_cols=104  Identities=13%  Similarity=0.097  Sum_probs=60.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ..+|+|+|+ |+||+.+++.+. .-+++++ ++|+... ..+       ... +. +.++++++.      .+|+|+...
T Consensus       145 g~~vgIiG~-G~IG~~~A~~l~-~~G~~V~-~~d~~~~-~~~-------~~~-~~-~~~l~ell~------~aDvV~~~~  205 (333)
T 1dxy_A          145 QQTVGVMGT-GHIGQVAIKLFK-GFGAKVI-AYDPYPM-KGD-------HPD-FD-YVSLEDLFK------QSDVIDLHV  205 (333)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHH-HTTCEEE-EECSSCC-SSC-------CTT-CE-ECCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEECc-CHHHHHHHHHHH-HCCCEEE-EECCCcc-hhh-------Hhc-cc-cCCHHHHHh------cCCEEEEcC
Confidence            368999998 999999999887 4588876 4775421 111       111 22 458999884      689999766


Q ss_pred             Cchh-HH----HHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCe
Q 022057          115 DAST-VY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG  158 (303)
Q Consensus       115 ~p~a-~~----~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~  158 (303)
                      +... +.    +-....++.|.-+|--.+|---+ .+.|.++.++.++.
T Consensus       206 P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd-~~aL~~aL~~g~i~  253 (333)
T 1dxy_A          206 PGIEQNTHIINEAAFNLMKPGAIVINTARPNLID-TQAMLSNLKSGKLA  253 (333)
T ss_dssp             CCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBC-HHHHHHHHHTTSEE
T ss_pred             CCchhHHHHhCHHHHhhCCCCcEEEECCCCcccC-HHHHHHHHHhCCcc
Confidence            4221 11    22223344454444434442211 24566666665543

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=94.37  E-value=0.058  Score=50.49  Aligned_cols=65  Identities=17%  Similarity=0.174  Sum_probs=45.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|. |+||+.+++.+. .-++++++ +|+..  .. .. +   ...|+. +.++++++.      .+|+|+...
T Consensus       165 g~tvgIIGl-G~IG~~vA~~l~-~~G~~V~~-~d~~~--~~-~~-~---~~~g~~-~~~l~ell~------~aDvV~l~~  227 (335)
T 2g76_A          165 GKTLGILGL-GRIGREVATRMQ-SFGMKTIG-YDPII--SP-EV-S---ASFGVQ-QLPLEEIWP------LCDFITVHT  227 (335)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-TTTCEEEE-ECSSS--CH-HH-H---HHTTCE-ECCHHHHGG------GCSEEEECC
T ss_pred             cCEEEEEeE-CHHHHHHHHHHH-HCCCEEEE-ECCCc--ch-hh-h---hhcCce-eCCHHHHHh------cCCEEEEec
Confidence            368999997 999999999887 46788764 67642  11 11 1   123443 358899884      799999776


Q ss_pred             Cc
Q 022057          115 DA  116 (303)
Q Consensus       115 ~p  116 (303)
                      +.
T Consensus       228 P~  229 (335)
T 2g76_A          228 PL  229 (335)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=94.34  E-value=0.075  Score=49.29  Aligned_cols=70  Identities=21%  Similarity=0.239  Sum_probs=41.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEecCC--CCcchhhhhcCCCCCCeeec----CCHHHHHhccccCCCcc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARA  108 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd~~~--~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~D  108 (303)
                      |||+|+|++|.+|+.++..+... +-..=+..+|.+.  .|. +-++...  ...+.+.    ++..+.+      .++|
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~-a~Dl~~~--~~~~~v~~~~~~~~~~~~------~~aD   71 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGV-AVDLSHI--PTAVKIKGFSGEDATPAL------EGAD   71 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHH-HHHHHTS--CSSEEEEEECSSCCHHHH------TTCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhH-HHHhhCC--CCCceEEEecCCCcHHHh------CCCC
Confidence            69999997799999999988765 4333344677643  111 1222221  2333442    2334444      4899


Q ss_pred             EEEEcC
Q 022057          109 VVIDFT  114 (303)
Q Consensus       109 VvIDfT  114 (303)
                      +||-..
T Consensus        72 ivii~a   77 (312)
T 3hhp_A           72 VVLISA   77 (312)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            988654

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=94.33  E-value=0.15  Score=51.45  Aligned_cols=34  Identities=24%  Similarity=0.219  Sum_probs=29.4

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      ++++|.|.|++|.+|+.+++.+.+.++.++++..
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~  347 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD  347 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEE
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEE
Confidence            3589999999999999999999877688888754

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=94.33  E-value=0.17  Score=44.34  Aligned_cols=39  Identities=13%  Similarity=0.227  Sum_probs=27.5

Q ss_pred             cCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        29 ~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ..+.+|..+|.|.|++|.+|+.+++.+.+ .+.+|+. +++
T Consensus        16 ~~~~~m~k~vlITGas~gIG~~la~~l~~-~G~~V~~-~~r   54 (251)
T 3orf_A           16 PRGSHMSKNILVLGGSGALGAEVVKFFKS-KSWNTIS-IDF   54 (251)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             ccccccCCEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EeC
Confidence            34557778899999999999999999885 5788665 454

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=94.33  E-value=0.37  Score=41.90  Aligned_cols=81  Identities=17%  Similarity=0.156  Sum_probs=51.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.. +++.  ....++               .+.+.     .++. +..|.+
T Consensus        13 k~vlVTGasggiG~~~a~~l~~-~G~~V~~~-~r~~--~~~~~~---------------~~~~~-----~~~~~~~~D~~   68 (265)
T 2o23_A           13 LVAVITGGASGLGLATAERLVG-QGASAVLL-DLPN--SGGEAQ---------------AKKLG-----NNCVFAPADVT   68 (265)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE-ECTT--SSHHHH---------------HHHHC-----TTEEEEECCTT
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEE-eCCc--HhHHHH---------------HHHhC-----CceEEEEcCCC
Confidence            5799999999999999999885 57887764 4432  111111               01111     1233 345788


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++|+-..|.
T Consensus        69 ~~~~v~~~~~~~~~~~g~id~li~~Ag~   96 (265)
T 2o23_A           69 SEKDVQTALALAKGKFGRVDVAVNCAGI   96 (265)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEECCcc
Confidence            888877777665543  68888876653

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=94.31  E-value=0.088  Score=54.25  Aligned_cols=34  Identities=21%  Similarity=0.134  Sum_probs=27.0

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      .+.||+|+|+ |.||..++..+.. .+++++. +|.+
T Consensus       311 ~~~kV~VIGa-G~MG~~iA~~la~-aG~~V~l-~D~~  344 (725)
T 2wtb_A          311 KIKKVAIIGG-GLMGSGIATALIL-SNYPVIL-KEVN  344 (725)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHT-TTCCEEE-ECSS
T ss_pred             cCcEEEEEcC-CHhhHHHHHHHHh-CCCEEEE-EECC
Confidence            3578999998 9999999998774 5787664 6653

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.28  E-value=0.4  Score=43.86  Aligned_cols=70  Identities=13%  Similarity=0.122  Sum_probs=43.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchh--hhhcC----CCCCCeeecCCHHHHHhccccCCCcc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIG--MVCDM----EQPLEIPVMSDLTMVLGSISQSKARA  108 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~--~~~g~----~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (303)
                      |||+|+|+ |.||..++..+.... +.+++ .+|.+..-.+.-  ++...    .....+..++|+++ +      .++|
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~-l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l------~~aD   71 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELV-LLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-T------ANSD   71 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-G------TTCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-H------CCCC
Confidence            58999998 999999999887653 66766 467542100000  11100    01223455678876 5      4899


Q ss_pred             EEEEcC
Q 022057          109 VVIDFT  114 (303)
Q Consensus       109 VvIDfT  114 (303)
                      +||...
T Consensus        72 vViiav   77 (310)
T 1guz_A           72 IVIITA   77 (310)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            999776

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=94.16  E-value=0.053  Score=53.79  Aligned_cols=66  Identities=17%  Similarity=0.156  Sum_probs=46.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .++|+|+|+ |+||+.+++.+.. -++++++ +|+...   ... +   ...|+... ++++++.      .+|+|+-.+
T Consensus       142 g~~vgIIG~-G~IG~~vA~~l~~-~G~~V~~-~d~~~~---~~~-a---~~~g~~~~-~l~e~~~------~aDvV~l~~  204 (529)
T 1ygy_A          142 GKTVGVVGL-GRIGQLVAQRIAA-FGAYVVA-YDPYVS---PAR-A---AQLGIELL-SLDDLLA------RADFISVHL  204 (529)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHT-TTCEEEE-ECTTSC---HHH-H---HHHTCEEC-CHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHh-CCCEEEE-ECCCCC---hhH-H---HhcCcEEc-CHHHHHh------cCCEEEECC
Confidence            479999997 9999999998874 5888775 676431   111 1   12344443 7888884      699999887


Q ss_pred             Cch
Q 022057          115 DAS  117 (303)
Q Consensus       115 ~p~  117 (303)
                      ++.
T Consensus       205 P~~  207 (529)
T 1ygy_A          205 PKT  207 (529)
T ss_dssp             CCS
T ss_pred             CCc
Confidence            655

>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A*

Probab=94.16  E-value=0.23  Score=48.35  Aligned_cols=111  Identities=14%  Similarity=0.099  Sum_probs=57.9

Q ss_pred             ceEEEeecCCC----C-CceeEEEEcCCcHHHHHHHHHHHh---cC-CcEEEEEEecCCC------------------C-
Q 022057           22 KRFISCSTNPP----Q-SNIKVIINGAVKEIGRAAVIAVTK---AR-GMEVAGAIDSHSV------------------G-   73 (303)
Q Consensus        22 ~~~~~~~~~~~----~-~~ikV~V~G~~GrMG~~i~~~i~~---~~-~~eLvg~vd~~~~------------------g-   73 (303)
                      +|+-+|-.+..    + .|.||.|.|+||-+|+.-.+.+.+   +| .+++++.......                  . 
T Consensus        59 ~~~~~~~~~~~~~~~~~~mk~I~ILGSTGSIGtqTLdVi~~~p~~pd~f~V~aLaAg~Nv~lL~eQ~~ef~P~~v~v~d~  138 (488)
T 3au8_A           59 KRIKLCKKDLIDIGAIKKPINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVNKSVNELYEQAREFLPEYLCIHDK  138 (488)
T ss_dssp             ------------------CEEEEEETTTSHHHHHHHHHHHHHHHHSCCEEEEEEEESSCHHHHHHHHHHHCCSEEEESCG
T ss_pred             EEEEeccccchhhhhhhcceEEEEEccCcHHHHHHHHHHHcccCCCCeEEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCH
Confidence            67777755544    2 256899999999999999998887   44 4999998753210                  0 


Q ss_pred             cchhhhhcCCC---CCCeeecC---CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEe
Q 022057           74 EDIGMVCDMEQ---PLEIPVMS---DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (303)
Q Consensus        74 ~d~~~~~g~~~---~~gv~v~~---dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVig  136 (303)
                      ..+.++.....   ..++.+..   .+.++..    ..++|+|+-.-.-.+...-...|+++|+.+-..
T Consensus       139 ~~~~~L~~~l~~~~~~~~~v~~G~egl~e~a~----~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~IALA  203 (488)
T 3au8_A          139 SVYEELKELVKNIKDYKPIILCGDEGMKEICS----SNSIDKIVIGIDSFQGLYSTMYAIMNNKIVALA  203 (488)
T ss_dssp             GGTHHHHTGGGGSTTCCCEEEEHHHHHHHHHH----CTTCCEEEECCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             HHHHHHHHHhhhhcCCCceEEeCHHHHHHHhc----CCCCCEEEEccccHhHHHHHHHHHHCCCcEEEe
Confidence            00011100000   11222221   1223332    245788886666666666677788888887765

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.15  E-value=0.15  Score=41.26  Aligned_cols=119  Identities=13%  Similarity=0.168  Sum_probs=61.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC--CcchhhhhcCCCCCCeee-c---CCHHHHHhccccCCCccE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAV  109 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~--g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DV  109 (303)
                      .+|.|+|+ |++|+.+++.+.+ .+.+++. +|++..  -+.+.+..    +.++.+ .   .+.+.+.+.  .-.++|+
T Consensus         4 ~~vlI~G~-G~vG~~la~~L~~-~g~~V~v-id~~~~~~~~~~~~~~----~~~~~~i~gd~~~~~~l~~a--~i~~ad~   74 (153)
T 1id1_A            4 DHFIVCGH-SILAINTILQLNQ-RGQNVTV-ISNLPEDDIKQLEQRL----GDNADVIPGDSNDSSVLKKA--GIDRCRA   74 (153)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHH-TTCCEEE-EECCCHHHHHHHHHHH----CTTCEEEESCTTSHHHHHHH--TTTTCSE
T ss_pred             CcEEEECC-CHHHHHHHHHHHH-CCCCEEE-EECCChHHHHHHHHhh----cCCCeEEEcCCCCHHHHHHc--ChhhCCE
Confidence            57999998 9999999998875 4677775 454310  00111111    123322 1   222222110  0147899


Q ss_pred             EEEcCCchhHHH-HHHHHHHc-C-CCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          110 VIDFTDASTVYD-NVKQATAF-G-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       110 vIDfT~p~a~~~-~~~~al~~-g-~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      +|-.+..+.... ....+.+. + .++|.-....  +..+.+    ++.|+..++.|....+-
T Consensus        75 vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~--~~~~~l----~~~G~~~vi~p~~~~~~  131 (153)
T 1id1_A           75 ILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDS--KNLNKI----KMVHPDIILSPQLFGSE  131 (153)
T ss_dssp             EEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSG--GGHHHH----HTTCCSEEECHHHHHHH
T ss_pred             EEEecCChHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHH----HHcCCCEEEcHHHHHHH
Confidence            887776554433 33344443 4 3555433333  222333    44567777777655554

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=94.14  E-value=0.22  Score=46.12  Aligned_cols=32  Identities=22%  Similarity=0.253  Sum_probs=26.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      |+|.|.|++|.+|+.+++.+.+..+.+++++.
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~   34 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVD   34 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCCEEEEEe
Confidence            58999999999999999998823578888743

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=94.13  E-value=0.21  Score=48.31  Aligned_cols=36  Identities=17%  Similarity=0.216  Sum_probs=30.3

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEe
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAID   68 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd   68 (303)
                      ..+++|.|.|++|.+|+.+++.+.+.+  +.++++...
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R  108 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVR  108 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence            346899999999999999999998765  678887654

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=94.10  E-value=0.064  Score=49.99  Aligned_cols=63  Identities=14%  Similarity=0.082  Sum_probs=43.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ..+|+|+|+ |+||+.+++.+.. -++++.+ +|+... ..+.       .. +...+++++++.      .+|+|+...
T Consensus       146 g~~vgIiG~-G~IG~~~A~~l~~-~G~~V~~-~d~~~~-~~~~-------~~-~~~~~~l~ell~------~aDvV~l~~  207 (333)
T 1j4a_A          146 DQVVGVVGT-GHIGQVFMQIMEG-FGAKVIT-YDIFRN-PELE-------KK-GYYVDSLDDLYK------QADVISLHV  207 (333)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSCC-HHHH-------HT-TCBCSCHHHHHH------HCSEEEECS
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHH-CCCEEEE-ECCCcc-hhHH-------hh-CeecCCHHHHHh------hCCEEEEcC
Confidence            368999998 9999999998874 5888764 675421 1111       11 223347889884      689999776


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       208 p  208 (333)
T 1j4a_A          208 P  208 (333)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=94.09  E-value=0.062  Score=49.75  Aligned_cols=87  Identities=14%  Similarity=0.043  Sum_probs=55.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ..+++|+|+ |.||+.+++.+.+..+.+-+.++|++ ..+...+...  ..+|+  ... |+++++.      ++|+||-
T Consensus       121 ~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~--~~~g~~~~~~-~~~eav~------~aDIVi~  189 (313)
T 3hdj_A          121 SSVLGLFGA-GTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIG--RRCGVPARMA-APADIAA------QADIVVT  189 (313)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHH--HHHTSCEEEC-CHHHHHH------HCSEEEE
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHH--HhcCCeEEEe-CHHHHHh------hCCEEEE
Confidence            368999997 99999999998875557677788876 2222211110  01233  445 8999984      7999998


Q ss_pred             cCCchhHHHHH-HHHHHcCCCeE
Q 022057          113 FTDASTVYDNV-KQATAFGMRSV  134 (303)
Q Consensus       113 fT~p~a~~~~~-~~al~~g~~vV  134 (303)
                      +|+...  +.+ ...++.|.+++
T Consensus       190 aT~s~~--pvl~~~~l~~G~~V~  210 (313)
T 3hdj_A          190 ATRSTT--PLFAGQALRAGAFVG  210 (313)
T ss_dssp             CCCCSS--CSSCGGGCCTTCEEE
T ss_pred             ccCCCC--cccCHHHcCCCcEEE
Confidence            775321  111 23456777766

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=94.07  E-value=0.094  Score=50.73  Aligned_cols=134  Identities=13%  Similarity=0.146  Sum_probs=79.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCCe------------eecCCHHHHH
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLEI------------PVMSDLTMVL   98 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~~~~gv------------~v~~dl~~~l   98 (303)
                      .+|+|.|+ |+||+..++.+. +.+..+|++.|+.     ..|-|..++.......+.            ..+.+.++++
T Consensus       211 k~vaVqG~-GnVG~~aa~~L~-e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~~~  288 (421)
T 1v9l_A          211 KTVAIQGM-GNVGRWTAYWLE-KMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIF  288 (421)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-TTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGG
T ss_pred             CEEEEECc-CHHHHHHHHHHH-HCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchhhh
Confidence            68999997 999999999776 5699999999962     334455444332222221            1121335666


Q ss_pred             hccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCCeEEEcCCCcH---HHHH-
Q 022057           99 GSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI---GSIL-  171 (303)
Q Consensus        99 ~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT--G~~~e~~~~L~~~a~~~~i~vv~a~N~Si---Gv~l-  171 (303)
                      .     .++||++-+..+... .+++.   +.+..+|++--  .++++..   +.+. ++|  +++.|-+..   ||.. 
T Consensus       289 ~-----~~~Dil~P~A~~~~I~~~~a~---~l~ak~V~EgAN~p~t~~a~---~~l~-~~G--i~~~PD~~aNaGGV~~S  354 (421)
T 1v9l_A          289 K-----LDVDIFVPAAIENVIRGDNAG---LVKARLVVEGANGPTTPEAE---RILY-ERG--VVVVPDILANAGGVIMS  354 (421)
T ss_dssp             G-----CCCSEEEECSCSSCBCTTTTT---TCCCSEEECCSSSCBCHHHH---HHHH-TTT--CEEECHHHHSTHHHHHH
T ss_pred             c-----CCccEEEecCcCCccchhhHH---HcCceEEEecCCCcCCHHHH---HHHH-HCC--CEEeChHHhhCCCeeee
Confidence            5     589999988765444 33333   45889999865  4565432   2233 434  455565432   4432 


Q ss_pred             HHHHHHHhccCCCc
Q 022057          172 LQQAAISASFHYKN  185 (303)
Q Consensus       172 l~~~a~~~~~~~~d  185 (303)
                      -.+..+.+..+.|+
T Consensus       355 ~~E~~qn~~~~~w~  368 (421)
T 1v9l_A          355 YLEWVENLQWYIWD  368 (421)
T ss_dssp             HHHHHHHHTTCCCC
T ss_pred             HHHHHhhccccCCC
Confidence            13345555555554

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=94.07  E-value=0.086  Score=50.00  Aligned_cols=64  Identities=14%  Similarity=0.121  Sum_probs=44.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|. |+||+.+++.+. .-++++.+ +|+..  . .....    ..|+. +.+++++++      .+|+|+-..
T Consensus       176 gktvGIIGl-G~IG~~vA~~l~-~fG~~V~~-~d~~~--~-~~~~~----~~g~~-~~~l~ell~------~aDvV~l~~  238 (365)
T 4hy3_A          176 GSEIGIVGF-GDLGKALRRVLS-GFRARIRV-FDPWL--P-RSMLE----ENGVE-PASLEDVLT------KSDFIFVVA  238 (365)
T ss_dssp             SSEEEEECC-SHHHHHHHHHHT-TSCCEEEE-ECSSS--C-HHHHH----HTTCE-ECCHHHHHH------SCSEEEECS
T ss_pred             CCEEEEecC-CcccHHHHHhhh-hCCCEEEE-ECCCC--C-HHHHh----hcCee-eCCHHHHHh------cCCEEEEcC
Confidence            368999997 999999999876 45888775 67642  1 11111    23443 468999985      799998765


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       239 P  239 (365)
T 4hy3_A          239 A  239 (365)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=94.06  E-value=0.15  Score=45.40  Aligned_cols=31  Identities=23%  Similarity=0.347  Sum_probs=26.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      |||.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~   31 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVD   31 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHh-CCCEEEEEe
Confidence            5899999999999999999885 578887653

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=94.04  E-value=0.15  Score=48.22  Aligned_cols=109  Identities=15%  Similarity=0.191  Sum_probs=67.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|.|+ |++|+.+++.+. .-+++++ +.|++.   +..++.   ..+++... +.++++.     .++||++-+.
T Consensus       175 GktV~I~G~-GnVG~~~A~~l~-~~GakVv-vsD~~~---~~~~~a---~~~ga~~v-~~~ell~-----~~~DIliP~A  239 (355)
T 1c1d_A          175 GLTVLVQGL-GAVGGSLASLAA-EAGAQLL-VADTDT---ERVAHA---VALGHTAV-ALEDVLS-----TPCDVFAPCA  239 (355)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-HTTCEEE-EECSCH---HHHHHH---HHTTCEEC-CGGGGGG-----CCCSEEEECS
T ss_pred             CCEEEEECc-CHHHHHHHHHHH-HCCCEEE-EEeCCc---cHHHHH---HhcCCEEe-ChHHhhc-----CccceecHhH
Confidence            368999997 999999999877 4689999 888642   111222   12344333 5567774     4889998655


Q ss_pred             CchhH-HHHHHHHHHcCCCeEEeCCC--CCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057          115 DASTV-YDNVKQATAFGMRSVVYVPH--IQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus       115 ~p~a~-~~~~~~al~~g~~vVigTTG--~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                      ..... .+++.   ..+..+|+++..  .++++.  . ++-++++  +++.|-+.
T Consensus       240 ~~~~I~~~~~~---~lk~~iVie~AN~p~t~~eA--~-~~L~~~g--Ilv~Pd~~  286 (355)
T 1c1d_A          240 MGGVITTEVAR---TLDCSVVAGAANNVIADEAA--S-DILHARG--ILYAPDFV  286 (355)
T ss_dssp             CSCCBCHHHHH---HCCCSEECCSCTTCBCSHHH--H-HHHHHTT--CEECCHHH
T ss_pred             HHhhcCHHHHh---hCCCCEEEECCCCCCCCHHH--H-HHHHhCC--EEEECCeE
Confidence            44333 44443   446889999873  343332  2 3334444  46666544

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=94.04  E-value=0.06  Score=50.28  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=26.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (303)
                      ++||+|+|+ |.||..++..+...+-+ +|+ .+|..
T Consensus         9 ~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~-l~D~~   43 (326)
T 3vku_A            9 HQKVILVGD-GAVGSSYAYAMVLQGIAQEIG-IVDIF   43 (326)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCeEE-EEeCC
Confidence            579999998 99999999988866544 544 57753

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=94.01  E-value=0.097  Score=48.77  Aligned_cols=64  Identities=17%  Similarity=0.313  Sum_probs=43.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|. |+||+.+++.+. .-++++.+ +|+..  .....+      .....+.+++++++      ++|+|+-..
T Consensus       137 gktvGIiGl-G~IG~~vA~~l~-~~G~~V~~-~dr~~--~~~~~~------~~~~~~~~l~ell~------~aDvV~l~l  199 (324)
T 3evt_A          137 GQQLLIYGT-GQIGQSLAAKAS-ALGMHVIG-VNTTG--HPADHF------HETVAFTATADALA------TANFIVNAL  199 (324)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-HTTCEEEE-EESSC--CCCTTC------SEEEEGGGCHHHHH------HCSEEEECC
T ss_pred             CCeEEEECc-CHHHHHHHHHHH-hCCCEEEE-ECCCc--chhHhH------hhccccCCHHHHHh------hCCEEEEcC
Confidence            368999997 999999999887 45899876 66542  111110      01122467889885      699998765


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       200 P  200 (324)
T 3evt_A          200 P  200 (324)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=93.99  E-value=0.26  Score=45.40  Aligned_cols=32  Identities=25%  Similarity=0.295  Sum_probs=27.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      |.+|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus        28 ~k~vlVtGatG~IG~~l~~~L~~-~g~~V~~~~   59 (381)
T 1n7h_A           28 RKIALITGITGQDGSYLTEFLLG-KGYEVHGLI   59 (381)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCeEEEEcCCchHHHHHHHHHHH-CCCEEEEEe
Confidence            36899999999999999999886 478888754

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=93.95  E-value=0.11  Score=48.00  Aligned_cols=35  Identities=26%  Similarity=0.365  Sum_probs=26.2

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecC
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSH   70 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~   70 (303)
                      +++||+|+|+ |.||..++..+....- -+|+ .+|.+
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~-l~Di~   40 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIV-LIDAN   40 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSS
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEE-EEeCC
Confidence            3579999998 9999999988875532 2554 47754

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=93.91  E-value=0.13  Score=47.53  Aligned_cols=60  Identities=22%  Similarity=0.194  Sum_probs=43.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ..+|+|+|+ |+||+.+++.+.. -++++.+ +|+...  ..        .  + .+.++++++.      .+|+|+-..
T Consensus       144 g~~vgIIG~-G~IG~~~A~~l~~-~G~~V~~-~d~~~~--~~--------~--~-~~~~l~ell~------~aDvV~l~~  201 (311)
T 2cuk_A          144 GLTLGLVGM-GRIGQAVAKRALA-FGMRVVY-HARTPK--PL--------P--Y-PFLSLEELLK------EADVVSLHT  201 (311)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSCC--SS--------S--S-CBCCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEEE-CHHHHHHHHHHHH-CCCEEEE-ECCCCc--cc--------c--c-ccCCHHHHHh------hCCEEEEeC
Confidence            478999998 9999999998874 5788764 665421  10        1  1 2568889884      689999776


Q ss_pred             Cc
Q 022057          115 DA  116 (303)
Q Consensus       115 ~p  116 (303)
                      +.
T Consensus       202 p~  203 (311)
T 2cuk_A          202 PL  203 (311)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=93.88  E-value=0.15  Score=47.54  Aligned_cols=64  Identities=17%  Similarity=0.267  Sum_probs=43.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|. |+||+.+++.+.. -++++.+ +|+..  .....+      .+...+.+++++++      .+|+|+-..
T Consensus       140 g~tvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~dr~~--~~~~~~------~~~~~~~~l~ell~------~aDvV~l~l  202 (324)
T 3hg7_A          140 GRTLLILGT-GSIGQHIAHTGKH-FGMKVLG-VSRSG--RERAGF------DQVYQLPALNKMLA------QADVIVSVL  202 (324)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSC--CCCTTC------SEEECGGGHHHHHH------TCSEEEECC
T ss_pred             cceEEEEEE-CHHHHHHHHHHHh-CCCEEEE-EcCCh--HHhhhh------hcccccCCHHHHHh------hCCEEEEeC
Confidence            368999997 9999999998874 5898775 66542  111110      11223568999985      799998665


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       203 P  203 (324)
T 3hg7_A          203 P  203 (324)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=93.88  E-value=0.12  Score=48.01  Aligned_cols=31  Identities=26%  Similarity=0.372  Sum_probs=25.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      -||+|+|+ |-||+.|+...+ ..+++++ ++|.
T Consensus         7 ~~VaViGa-G~MG~giA~~~a-~~G~~V~-l~D~   37 (319)
T 3ado_A            7 GDVLIVGS-GLVGRSWAMLFA-SGGFRVK-LYDI   37 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCCEE-EECS
T ss_pred             CeEEEECC-cHHHHHHHHHHH-hCCCeEE-EEEC
Confidence            48999998 999999998776 5688866 5674

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=93.85  E-value=0.053  Score=52.48  Aligned_cols=134  Identities=11%  Similarity=0.131  Sum_probs=69.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC----------CCCcchhhhhcCCCCCC-------eeecCCHHHH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------SVGEDIGMVCDMEQPLE-------IPVMSDLTMV   97 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~----------~~g~d~~~~~g~~~~~g-------v~v~~dl~~~   97 (303)
                      ..||+|.|+ |++|+..++.+. +.+..+|++.|++          ..|-|..++.......+       .... +.+++
T Consensus       212 g~~vaVqG~-GnVG~~~a~~L~-~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~~~~  288 (421)
T 2yfq_A          212 DAKIAVQGF-GNVGTFTVKNIE-RQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TDEEF  288 (421)
T ss_dssp             GSCEEEECC-SHHHHHHHHHHH-HTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC----------------
T ss_pred             CCEEEEECc-CHHHHHHHHHHH-HCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-Cccch
Confidence            368999997 999999999877 4689999999876          12334433221100000       1111 22445


Q ss_pred             HhccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCCeEEEcCCCcH---HHHH
Q 022057           98 LGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---GSIL  171 (303)
Q Consensus        98 l~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G-~~~e~~~~L~~~a~~~~i~vv~a~N~Si---Gv~l  171 (303)
                      +.     .++||+|.++.+... .+++.   +.+..+|++.- + ++++ ..++.+   ++|+  ++.|-+..   ||.+
T Consensus       289 ~~-----~~~DIliP~A~~n~i~~~~A~---~l~ak~VvEgAN~P~t~e-a~~il~---~~GI--~~~Pd~~aNaGGV~v  354 (421)
T 2yfq_A          289 WT-----KEYDIIVPAALENVITGERAK---TINAKLVCEAANGPTTPE-GDKVLT---ERGI--NLTPDILTNSGGVLV  354 (421)
T ss_dssp             -----------CEEECSCSSCSCHHHHT---TCCCSEEECCSSSCSCHH-HHHHHH---HHTC--EEECHHHHTTHHHHH
T ss_pred             hc-----CCccEEEEcCCcCcCCcccHH---HcCCeEEEeCCccccCHH-HHHHHH---HCCC--EEEChHHHhCCCeEE
Confidence            53     589999999866544 45554   44788888765 3 5554 333322   4445  45554432   4432


Q ss_pred             H-HHHHHHhccCCCc
Q 022057          172 L-QQAAISASFHYKN  185 (303)
Q Consensus       172 l-~~~a~~~~~~~~d  185 (303)
                      - .+..+....++|+
T Consensus       355 S~~E~~qN~~~~~w~  369 (421)
T 2yfq_A          355 SYYEWVQNQYGYYWT  369 (421)
T ss_dssp             HHHHHHHHHHTCCCC
T ss_pred             EEEEEEecCccCcCC
Confidence            1 2334444445554

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=93.80  E-value=0.34  Score=41.75  Aligned_cols=82  Identities=20%  Similarity=0.262  Sum_probs=52.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCC---HHHHHhccccCCCcc-EE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD---LTMVLGSISQSKARA-VV  110 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~d---l~~~l~~~~~~~~~D-Vv  110 (303)
                      |.|+.|+|+ |..|+.+++.+.+ .++++++.+|.+..   ...      -.|+|++..   ++++..     ...| ++
T Consensus        12 ~k~v~IiGA-Gg~g~~v~~~l~~-~~~~~vgfiDd~~~---~~~------~~g~~Vlg~~~~~~~~~~-----~~~~~v~   75 (220)
T 4ea9_A           12 IGGVVIIGG-GGHAKVVIESLRA-CGETVAAIVDADPT---RRA------VLGVPVVGDDLALPMLRE-----QGLSRLF   75 (220)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHH-TTCCEEEEECSCC------C------BTTBCEEESGGGHHHHHH-----TTCCEEE
T ss_pred             CCCEEEEcC-CHHHHHHHHHHHh-CCCEEEEEEeCCcc---cCc------CCCeeEECCHHHHHHhhc-----ccccEEE
Confidence            468999998 9999999998886 78999999996531   111      246677543   444443     2343 33


Q ss_pred             EEcCCchhHHHHHHHHHHcCCC
Q 022057          111 IDFTDASTVYDNVKQATAFGMR  132 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~  132 (303)
                      +=..++..-.+..+.+.+.+..
T Consensus        76 iAIg~~~~R~~i~~~l~~~g~~   97 (220)
T 4ea9_A           76 VAIGDNRLRQKLGRKARDHGFS   97 (220)
T ss_dssp             ECCCCHHHHHHHHHHHHHTTCE
T ss_pred             EecCCHHHHHHHHHHHHhcCCC
Confidence            3222455556666777777754

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=93.80  E-value=0.056  Score=50.17  Aligned_cols=72  Identities=13%  Similarity=0.133  Sum_probs=44.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC------cEEEEEEecC----C---CCcchhhhhcC--CCCCCeeecCCHHHHHh
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG------MEVAGAIDSH----S---VGEDIGMVCDM--EQPLEIPVMSDLTMVLG   99 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~------~eLvg~vd~~----~---~g~d~~~~~g~--~~~~gv~v~~dl~~~l~   99 (303)
                      ++||+|+|++|.+|+.++..+....-      .+|+. +|.+    .   .| .+.++...  .-..++..++++.+++ 
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l-~Di~~~~~~~~~~g-~~~dl~~~~~~~~~~i~~~~~~~~al-   81 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQL-LEIPNEKAQKALQG-VMMEIDDCAFPLLAGMTAHADPMTAF-   81 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEE-ECCSCHHHHHHHHH-HHHHHHTTTCTTEEEEEEESSHHHHT-
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEE-EcCCCccccccchh-hHHHHhhhcccccCcEEEecCcHHHh-
Confidence            58999999889999999998876442      26665 7754    1   01 01112210  0011344567888887 


Q ss_pred             ccccCCCccEEEEcC
Q 022057          100 SISQSKARAVVIDFT  114 (303)
Q Consensus       100 ~~~~~~~~DVvIDfT  114 (303)
                           .++|+||-..
T Consensus        82 -----~~aD~Vi~~a   91 (329)
T 1b8p_A           82 -----KDADVALLVG   91 (329)
T ss_dssp             -----TTCSEEEECC
T ss_pred             -----CCCCEEEEeC
Confidence                 4799988653

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=93.78  E-value=0.046  Score=49.88  Aligned_cols=68  Identities=13%  Similarity=0.051  Sum_probs=42.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .++.|+|+ |.||+.++..+.+ .+..-+-+++++.  ..+.+++   .......++++++++      .++|+||..|+
T Consensus       118 k~vlvlGa-Gg~g~aia~~L~~-~G~~~v~v~~R~~--~~a~~la---~~~~~~~~~~~~~~~------~~aDiVInaTp  184 (277)
T 3don_A          118 AYILILGA-GGASKGIANELYK-IVRPTLTVANRTM--SRFNNWS---LNINKINLSHAESHL------DEFDIIINTTP  184 (277)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHT-TCCSCCEEECSCG--GGGTTCC---SCCEEECHHHHHHTG------GGCSEEEECCC
T ss_pred             CEEEEECC-cHHHHHHHHHHHH-CCCCEEEEEeCCH--HHHHHHH---HhcccccHhhHHHHh------cCCCEEEECcc
Confidence            58999998 9999999998885 5663334566542  2233332   122222344555555      36899997775


Q ss_pred             c
Q 022057          116 A  116 (303)
Q Consensus       116 p  116 (303)
                      .
T Consensus       185 ~  185 (277)
T 3don_A          185 A  185 (277)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=93.75  E-value=0.07  Score=54.89  Aligned_cols=35  Identities=14%  Similarity=0.210  Sum_probs=27.5

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      ..++||+|+|+ |.||..++..+.. .+++++ ++|.+
T Consensus       312 ~~i~kV~VIGa-G~MG~~iA~~la~-aG~~V~-l~D~~  346 (715)
T 1wdk_A          312 KDVKQAAVLGA-GIMGGGIAYQSAS-KGTPIL-MKDIN  346 (715)
T ss_dssp             CCCSSEEEECC-HHHHHHHHHHHHH-TTCCEE-EECSS
T ss_pred             ccCCEEEEECC-ChhhHHHHHHHHh-CCCEEE-EEECC
Confidence            34568999998 9999999998874 577766 46754

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=93.74  E-value=0.18  Score=45.98  Aligned_cols=32  Identities=19%  Similarity=0.187  Sum_probs=26.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCC-----cEEEEEEe
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARG-----MEVAGAID   68 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~-----~eLvg~vd   68 (303)
                      +||.|.|++|.+|+.+++.+.+ .+     .++++...
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~-~g~~~~~~~V~~~~r   38 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPL-ADTPGGPWKVYGVAR   38 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTS-TTCTTCSEEEEEEES
T ss_pred             CEEEEECCCcHHHHHHHHHHHh-CCCCCCceEEEEEeC
Confidence            6899999999999999998875 45     88877543

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.67  E-value=0.37  Score=42.48  Aligned_cols=110  Identities=14%  Similarity=0.140  Sum_probs=56.1

Q ss_pred             eecccccccccceEEEeecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee
Q 022057           11 RMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV   90 (303)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v   90 (303)
                      .-||-|-.|..-++.=..-+-.  ..+|.|+|+ |++|..-++.+.+. +.+++ +++++. ..++..++.   ..++..
T Consensus         9 ~~~~~~~~~~~~~~~Pifl~L~--gk~VLVVGg-G~va~~ka~~Ll~~-GA~Vt-Vvap~~-~~~l~~l~~---~~~i~~   79 (223)
T 3dfz_A            9 HHHHSSGHIEGRHMYTVMLDLK--GRSVLVVGG-GTIATRRIKGFLQE-GAAIT-VVAPTV-SAEINEWEA---KGQLRV   79 (223)
T ss_dssp             -------------CCEEEECCT--TCCEEEECC-SHHHHHHHHHHGGG-CCCEE-EECSSC-CHHHHHHHH---TTSCEE
T ss_pred             ccccccCcccccCccccEEEcC--CCEEEEECC-CHHHHHHHHHHHHC-CCEEE-EECCCC-CHHHHHHHH---cCCcEE
Confidence            3455666666644433333332  358999998 99999999988754 55554 455532 233333332   223322


Q ss_pred             -cCCHHH-HHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEE
Q 022057           91 -MSDLTM-VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (303)
Q Consensus        91 -~~dl~~-~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVi  135 (303)
                       ..++++ .+      .++|+||-.|.-+.+...+...++.|+++-+
T Consensus        80 i~~~~~~~dL------~~adLVIaAT~d~~~N~~I~~~ak~gi~VNv  120 (223)
T 3dfz_A           80 KRKKVGEEDL------LNVFFIVVATNDQAVNKFVKQHIKNDQLVNM  120 (223)
T ss_dssp             ECSCCCGGGS------SSCSEEEECCCCTHHHHHHHHHSCTTCEEEC
T ss_pred             EECCCCHhHh------CCCCEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence             222222 23      4789998777655665555555567777654

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=93.67  E-value=0.13  Score=49.89  Aligned_cols=135  Identities=16%  Similarity=0.216  Sum_probs=82.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCC-e---e-ecCCHHHHHhccccC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-I---P-VMSDLTMVLGSISQS  104 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~~~~g-v---~-v~~dl~~~l~~~~~~  104 (303)
                      -.||+|.|+ |++|+..++.+.+ .+..+|++.|++     ..|-|..++.....+.+ +   + -+-+.++++.     
T Consensus       221 g~~vaVqG~-GnVG~~aa~~l~e-~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~-----  293 (424)
T 3k92_A          221 NARIIIQGF-GNAGSFLAKFMHD-AGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLE-----  293 (424)
T ss_dssp             GCEEEEECC-SHHHHHHHHHHHH-HTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHH-----
T ss_pred             cCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCcccee-----
Confidence            378999997 9999999998774 589999999963     34666655443222222 1   1 1124567776     


Q ss_pred             CCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCCeEEEcCCCcH--HHHHH--HHHHH
Q 022057          105 KARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI--GSILL--QQAAI  177 (303)
Q Consensus       105 ~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G-~~~e~~~~L~~~a~~~~i~vv~a~N~Si--Gv~ll--~~~a~  177 (303)
                      .++||+|-++..... .+++.   +.+..+|++-- + .+++. .+   .-+++|  +++.|-+..  |.+..  .+..+
T Consensus       294 ~~~DIliPcA~~n~I~~~~a~---~l~ak~V~EgAN~p~t~eA-~~---iL~~rG--I~~~PD~~aNAGGV~vS~~E~~q  364 (424)
T 3k92_A          294 KDCDILVPAAISNQITAKNAH---NIQASIVVERANGPTTIDA-TK---ILNERG--VLLVPDILASAGGVTVSYFEWVQ  364 (424)
T ss_dssp             SCCSEEEECSCSSCBCTTTGG---GCCCSEEECCSSSCBCHHH-HH---HHHHTT--CEEECHHHHTTHHHHHHHHHHHH
T ss_pred             ccccEEeecCcccccChhhHh---hcCceEEEcCCCCCCCHHH-HH---HHHHCC--CEEECchHhcCCCEEeehhHHHh
Confidence            689999988754433 44444   34888998865 3 45433 22   234444  577777654  33322  33344


Q ss_pred             HhccCCCc
Q 022057          178 SASFHYKN  185 (303)
Q Consensus       178 ~~~~~~~d  185 (303)
                      .+..++|+
T Consensus       365 n~~~~~w~  372 (424)
T 3k92_A          365 NNQGYYWS  372 (424)
T ss_dssp             HHHTCCCC
T ss_pred             cccccCCC
Confidence            55555554

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=93.66  E-value=0.095  Score=43.88  Aligned_cols=30  Identities=27%  Similarity=0.389  Sum_probs=26.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~   66 (303)
                      ||||.|.|++|.+|+.+++.+.  .+.+++..
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~--~g~~V~~~   32 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE--KKAEVITA   32 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT--TTSEEEEE
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH--CCCeEEEE
Confidence            4689999999999999999987  58887764

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=93.65  E-value=0.14  Score=49.42  Aligned_cols=136  Identities=18%  Similarity=0.240  Sum_probs=79.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCCC-eee-cCCHHHHHhccccCCCc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLE-IPV-MSDLTMVLGSISQSKAR  107 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~~~~~g-v~v-~~dl~~~l~~~~~~~~~  107 (303)
                      ..+|+|.|+ |++|+..++.+. +.+..+|++.|+     +..|-|..++.....+.+ +.- .-+-++++.     .++
T Consensus       218 gk~vaVqG~-GnVG~~~a~~L~-~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~-----~~~  290 (419)
T 3aoe_E          218 GARVVVQGL-GQVGAAVALHAE-RLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFG-----LEA  290 (419)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-HTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGG-----SSC
T ss_pred             CCEEEEECc-CHHHHHHHHHHH-HCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhc-----cCc
Confidence            368999997 999999999887 469999999996     233555443321111111 100 012234554     589


Q ss_pred             cEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCCeEEEcCCCcH---HHHH-HHHHHHHhc
Q 022057          108 AVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI---GSIL-LQQAAISAS  180 (303)
Q Consensus       108 DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT--G~~~e~~~~L~~~a~~~~i~vv~a~N~Si---Gv~l-l~~~a~~~~  180 (303)
                      ||++-++.+... .+++.   +.+..+|++--  .++++..+.   +. ++|  +++.|-+..   ||.. -.+..+.+.
T Consensus       291 DVliP~A~~n~i~~~~A~---~l~ak~V~EgAN~p~t~~A~~~---L~-~~G--i~~~PD~~aNaGGV~~S~~E~~qn~~  361 (419)
T 3aoe_E          291 EVLVLAAREGALDGDRAR---QVQAQAVVEVANFGLNPEAEAY---LL-GKG--ALVVPDLLSGGGGLLASYLEWVQDLN  361 (419)
T ss_dssp             SEEEECSCTTCBCHHHHT---TCCCSEEEECSTTCBCHHHHHH---HH-HHT--CEEECHHHHTCHHHHHHHHHHHHHHH
T ss_pred             eEEEecccccccccchHh---hCCceEEEECCCCcCCHHHHHH---HH-HCC--CEEECHHHHhCCCchhhHHHHhhccc
Confidence            999999876555 44444   45889999865  355543222   33 334  466665443   4432 133455555


Q ss_pred             cCCCcE
Q 022057          181 FHYKNV  186 (303)
Q Consensus       181 ~~~~di  186 (303)
                      .+.|+-
T Consensus       362 ~~~w~~  367 (419)
T 3aoe_E          362 MFFWSP  367 (419)
T ss_dssp             TCCCCH
T ss_pred             ccCCCH
Confidence            555653

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=93.64  E-value=0.96  Score=41.97  Aligned_cols=88  Identities=19%  Similarity=0.299  Sum_probs=54.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---EEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (303)
                      ..+.|.|++|.+|+.+++.+.+ .+.+|+.. +++.  .....+           ...++++.+++. .....   +..|
T Consensus        46 k~vlVTGas~GIG~aia~~La~-~Ga~Vvl~-~r~~--~~~~~l-----------~~~l~~~~~~~~-~~g~~~~~~~~D  109 (346)
T 3kvo_A           46 CTVFITGASRGIGKAIALKAAK-DGANIVIA-AKTA--QPHPKL-----------LGTIYTAAEEIE-AVGGKALPCIVD  109 (346)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEEE-ESCC--SCCSSS-----------CCCHHHHHHHHH-HTTCEEEEEECC
T ss_pred             CEEEEeCCChHHHHHHHHHHHH-CCCEEEEE-ECCh--hhhhhh-----------HHHHHHHHHHHH-hcCCeEEEEEcc
Confidence            4689999999999999999884 57887654 4332  110000           011111111000 01222   3458


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .+.++.+.+.+..+.+.  ++++|+=..|
T Consensus       110 v~d~~~v~~~~~~~~~~~g~iDilVnnAG  138 (346)
T 3kvo_A          110 VRDEQQISAAVEKAIKKFGGIDILVNNAS  138 (346)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            99999998888877765  7999987665

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=93.53  E-value=0.18  Score=49.11  Aligned_cols=118  Identities=14%  Similarity=0.225  Sum_probs=73.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec-----CCCCc----chhhhhcCCCC-----------CCeeecCCH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGE----DIGMVCDMEQP-----------LEIPVMSDL   94 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~----d~~~~~g~~~~-----------~gv~v~~dl   94 (303)
                      ..+|+|.|. |+||+..++.+. +.+..||++.|+     +..|-    |+..+......           ++....+ .
T Consensus       230 g~~v~VqG~-GnVG~~~a~~L~-~~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i~-~  306 (449)
T 1bgv_A          230 GKTVALAGF-GNVAWGAAKKLA-ELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFP-G  306 (449)
T ss_dssp             TCEEEECCS-SHHHHHHHHHHH-HHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEE-T
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HCCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEeC-c
Confidence            368999997 999999998776 468999999995     23343    22222211000           0111111 1


Q ss_pred             HHHHhccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057           95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT--G~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      ++++.     .++|+++-+..+... .+++.....+|+.+|++--  .++++..   +.+.++.|+  ++.|-+
T Consensus       307 ~e~~~-----~~~Dil~P~A~~~~I~~~na~~l~a~g~kiV~EgAN~p~T~eA~---~~l~~~~Gi--~~~PD~  370 (449)
T 1bgv_A          307 EKPWG-----QKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEAL---RFLMQQPNM--VVAPSK  370 (449)
T ss_dssp             CCGGG-----SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHH---HHHHHCTTC--EEECHH
T ss_pred             hhhhc-----CCcceeeccccccccchhhHHHHHhcCCeEEEeCCCCcCCHHHH---HHHHHcCCE--EEEChH
Confidence            23443     589999988766554 7888888889999999865  4566542   333433255  555544

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.50  E-value=0.22  Score=43.13  Aligned_cols=120  Identities=10%  Similarity=0.088  Sum_probs=65.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-c---CCHHHHHhccccCCCccEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVv  110 (303)
                      ..+|.|+|+ |++|+.+++.+.+ .+. + -++|++.  .....+.     .++.+ .   ++.+.+.+.  .-.++|++
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~-~g~-v-~vid~~~--~~~~~~~-----~~~~~i~gd~~~~~~l~~a--~i~~ad~v   75 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRG-SEV-F-VLAEDEN--VRKKVLR-----SGANFVHGDPTRVSDLEKA--NVRGARAV   75 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTT-SEE-E-EEESCGG--GHHHHHH-----TTCEEEESCTTCHHHHHHT--TCTTCSEE
T ss_pred             CCEEEEECC-ChHHHHHHHHHHh-CCe-E-EEEECCH--HHHHHHh-----cCCeEEEcCCCCHHHHHhc--CcchhcEE
Confidence            468999998 9999999998864 455 4 4666542  1112111     12222 2   233322211  01478999


Q ss_pred             EEcCCchhH-HHHHHHHHHcCCC-eEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHH
Q 022057          111 IDFTDASTV-YDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (303)
Q Consensus       111 IDfT~p~a~-~~~~~~al~~g~~-vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll  172 (303)
                      |-.+..+.. ......+.+.+.+ -++... .+++..+.+.    +.|+..++.|....+-.+.
T Consensus        76 i~~~~~d~~n~~~~~~a~~~~~~~~iia~~-~~~~~~~~l~----~~G~~~vi~p~~~~a~~l~  134 (234)
T 2aef_A           76 IVDLESDSETIHCILGIRKIDESVRIIAEA-ERYENIEQLR----MAGADQVISPFVISGRLMS  134 (234)
T ss_dssp             EECCSCHHHHHHHHHHHHHHCSSSEEEEEC-SSGGGHHHHH----HHTCSEEECHHHHHHHHHH
T ss_pred             EEcCCCcHHHHHHHHHHHHHCCCCeEEEEE-CCHhHHHHHH----HCCCCEEECHHHHHHHHHH
Confidence            877755543 3344556666654 333222 3333334444    3456778888777776654

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=93.49  E-value=0.49  Score=40.53  Aligned_cols=85  Identities=24%  Similarity=0.297  Sum_probs=53.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-c-EEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-A-VVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-D-VvIDf  113 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++...+++.  ....++               .+.+..  ...+. . +..|.
T Consensus         2 k~vlITGasggiG~~~a~~l~~-~G~~v~~~~~r~~--~~~~~~---------------~~~~~~--~~~~~~~~~~~D~   61 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAE-DGFALAIHYGQNR--EKAEEV---------------AEEARR--RGSPLVAVLGANL   61 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHT-TTCEEEEEESSCH--HHHHHH---------------HHHHHH--TTCSCEEEEECCT
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHH---------------HHHHHh--cCCceEEEEeccC
Confidence            4799999999999999999885 6788887655431  111111               111110  00112 1 34478


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      +.++.+.+.+..+.+.  ++++|+-..|.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~d~li~~Ag~   90 (245)
T 2ph3_A           62 LEAEAATALVHQAAEVLGGLDTLVNNAGI   90 (245)
T ss_dssp             TSHHHHHHHHHHHHHHHTCCCEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            8888887777665543  68888877653

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=93.49  E-value=0.32  Score=45.34  Aligned_cols=31  Identities=10%  Similarity=0.172  Sum_probs=26.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      -+|.|+|++|.+|...++.+. ..+.++++..
T Consensus       166 ~~VlV~Ga~G~vG~~a~qla~-~~Ga~Vi~~~  196 (371)
T 3gqv_A          166 VYVLVYGGSTATATVTMQMLR-LSGYIPIATC  196 (371)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             cEEEEECCCcHHHHHHHHHHH-HCCCEEEEEe
Confidence            479999999999999998766 5688888875

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=93.43  E-value=0.22  Score=44.58  Aligned_cols=32  Identities=22%  Similarity=0.417  Sum_probs=27.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      +++|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus        12 ~~~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~   43 (321)
T 2pk3_A           12 SMRALITGVAGFVGKYLANHLTE-QNVEVFGTS   43 (321)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             cceEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence            57899999999999999999885 578888743

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=93.43  E-value=0.11  Score=48.92  Aligned_cols=71  Identities=21%  Similarity=0.258  Sum_probs=44.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCC---CC--cchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~---~g--~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (303)
                      ++||+|+|++|.+|+.++..+....- -||+ .+|...   .|  .|+.... . ....+..++|+.+.+      .++|
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evv-LiDi~~~k~~g~a~DL~~~~-~-~~~~i~~t~d~~~al------~dAD   78 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLC-LYDPFAVGLEGVAEEIRHCG-F-EGLNLTFTSDIKEAL------TDAK   78 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEE-EECSCHHHHHHHHHHHHHHC-C-TTCCCEEESCHHHHH------TTEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEE-EEeCCchhHHHHHHhhhhCc-C-CCCceEEcCCHHHHh------CCCC
Confidence            57999999779999999987765442 2554 577531   01  1111111 1 123455567888877      4899


Q ss_pred             EEEEcC
Q 022057          109 VVIDFT  114 (303)
Q Consensus       109 VvIDfT  114 (303)
                      +||-..
T Consensus        79 vVvita   84 (343)
T 3fi9_A           79 YIVSSG   84 (343)
T ss_dssp             EEEECC
T ss_pred             EEEEcc
Confidence            998653

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=93.42  E-value=0.29  Score=44.21  Aligned_cols=33  Identities=18%  Similarity=0.187  Sum_probs=26.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC------cEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG------MEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~------~eLvg~v   67 (303)
                      +|+|.|.|++|.+|+.+++.+.+...      .++++..
T Consensus        14 ~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~   52 (342)
T 2hrz_A           14 GMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLID   52 (342)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEE
Confidence            57999999999999999999886431      6777643

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=93.40  E-value=0.29  Score=49.77  Aligned_cols=97  Identities=13%  Similarity=0.162  Sum_probs=59.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchh----h-----hhcCCCCCCeeec-CC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIG----M-----VCDMEQPLEIPVM-SD   93 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-----g-------~d~~----~-----~~g~~~~~gv~v~-~d   93 (303)
                      .||.|+|+ |.+|..+++.+.. .|+.=+.++|.+.+     +       .|+|    +     +..+.....+..+ ..
T Consensus        18 s~VlVVGa-GGLGsevak~La~-aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~~   95 (640)
T 1y8q_B           18 GRVLVVGA-GGIGCELLKNLVL-TGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDS   95 (640)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-HTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEESC
T ss_pred             CeEEEECc-CHHHHHHHHHHHH-cCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEecc
Confidence            68999999 9999999999884 56655667774210     0       1111    0     1111111122211 11


Q ss_pred             H------HHHHhccccCCCccEEEEcC-CchhHHHHHHHHHHcCCCeEEeC-CCC
Q 022057           94 L------TMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYV-PHI  140 (303)
Q Consensus        94 l------~~~l~~~~~~~~~DVvIDfT-~p~a~~~~~~~al~~g~~vVigT-TG~  140 (303)
                      +      ++.+      ..+|+|||++ ++++-...-..|.++++|+|.+- .|+
T Consensus        96 i~~~~~~~~~~------~~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~g~~G~  144 (640)
T 1y8q_B           96 IMNPDYNVEFF------RQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGY  144 (640)
T ss_dssp             TTSTTSCHHHH------TTCSEEEECCSCHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             cchhhhhHhhh------cCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecc
Confidence            1      3455      4799999998 45555666688999999999653 353

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=93.38  E-value=0.1  Score=48.66  Aligned_cols=65  Identities=14%  Similarity=0.084  Sum_probs=44.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|. |+||+.+++.+. .-++++++ +|+..  .+.....    ..|+. +.+++++++      .+|+|+-..
T Consensus       145 g~tvGIIG~-G~IG~~vA~~l~-~~G~~V~~-~d~~~--~~~~~~~----~~g~~-~~~l~ell~------~aDvV~l~~  208 (330)
T 4e5n_A          145 NATVGFLGM-GAIGLAMADRLQ-GWGATLQY-HEAKA--LDTQTEQ----RLGLR-QVACSELFA------SSDFILLAL  208 (330)
T ss_dssp             TCEEEEECC-SHHHHHHHHHTT-TSCCEEEE-ECSSC--CCHHHHH----HHTEE-ECCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEee-CHHHHHHHHHHH-HCCCEEEE-ECCCC--CcHhHHH----hcCce-eCCHHHHHh------hCCEEEEcC
Confidence            379999997 999999999876 56888764 67642  1111111    23443 348999985      689998765


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       209 P  209 (330)
T 4e5n_A          209 P  209 (330)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=93.37  E-value=0.2  Score=46.97  Aligned_cols=62  Identities=23%  Similarity=0.221  Sum_probs=43.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|. |+||+.+++.+.. -++++.+ +|+..  .+  ..     ..++. +.+++++++      .+|+|+-..
T Consensus       148 gktvgIiGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~--~~--~~-----~~~~~-~~~l~ell~------~aDvV~l~~  208 (343)
T 2yq5_A          148 NLTVGLIGV-GHIGSAVAEIFSA-MGAKVIA-YDVAY--NP--EF-----EPFLT-YTDFDTVLK------EADIVSLHT  208 (343)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSC--CG--GG-----TTTCE-ECCHHHHHH------HCSEEEECC
T ss_pred             CCeEEEEec-CHHHHHHHHHHhh-CCCEEEE-ECCCh--hh--hh-----hcccc-ccCHHHHHh------cCCEEEEcC
Confidence            368999997 9999999998874 5898775 66542  11  11     11222 348999985      699998765


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       209 P  209 (343)
T 2yq5_A          209 P  209 (343)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=93.36  E-value=0.6  Score=41.14  Aligned_cols=83  Identities=16%  Similarity=0.198  Sum_probs=53.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---EEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (303)
                      ..|.|.|++|.+|+.+++.+.+ .+.+++...+++.  ....++               .+.+.+    ...+   +..|
T Consensus        27 k~vlITGas~gIG~a~a~~l~~-~G~~V~~~~~~~~--~~~~~~---------------~~~~~~----~~~~~~~~~~D   84 (272)
T 4e3z_A           27 PVVLVTGGSRGIGAAVCRLAAR-QGWRVGVNYAANR--EAADAV---------------VAAITE----SGGEAVAIPGD   84 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH---------------HHHHHH----TTCEEEEEECC
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCCh--hHHHHH---------------HHHHHh----cCCcEEEEEcC
Confidence            4689999999999999999885 5788766544431  111111               111111    1222   2347


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .+.++.+.+.+..+.+.  ++++|+-..|.
T Consensus        85 l~~~~~v~~~~~~~~~~~g~id~li~nAg~  114 (272)
T 4e3z_A           85 VGNAADIAAMFSAVDRQFGRLDGLVNNAGI  114 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence            88888888888777665  78999877653

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=93.36  E-value=0.11  Score=46.35  Aligned_cols=114  Identities=11%  Similarity=0.070  Sum_probs=63.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf  113 (303)
                      +|||+|+|+ |+||..++..+.+ .++++++ +++..   +   +.+. +-+-+|. +.+.+++..+.....++ +++|+
T Consensus         6 ~mkI~IIG~-G~~G~sLA~~L~~-~G~~V~~-~~~~~---~---~~~a-DilavP~-~ai~~vl~~l~~~l~~g~ivvd~   74 (232)
T 3dfu_A            6 RLRVGIFDD-GSSTVNMAEKLDS-VGHYVTV-LHAPE---D---IRDF-ELVVIDA-HGVEGYVEKLSAFARRGQMFLHT   74 (232)
T ss_dssp             CCEEEEECC-SCCCSCHHHHHHH-TTCEEEE-CSSGG---G---GGGC-SEEEECS-SCHHHHHHHHHTTCCTTCEEEEC
T ss_pred             CcEEEEEee-CHHHHHHHHHHHH-CCCEEEE-ecCHH---H---hccC-CEEEEcH-HHHHHHHHHHHHhcCCCCEEEEE
Confidence            469999997 9999999998885 4788776 44321   1   1110 1001122 24454443322112344 77886


Q ss_pred             C--CchhHHHHHHHHHHcCCCeEEeCC---------CCCHHHHHHHHHHhhhcCCeEEEc
Q 022057          114 T--DASTVYDNVKQATAFGMRSVVYVP---------HIQLETVSALSAFCDKASMGCLIA  162 (303)
Q Consensus       114 T--~p~a~~~~~~~al~~g~~vVigTT---------G~~~e~~~~L~~~a~~~~i~vv~a  162 (303)
                      |  .+....   ..+.+.|..+|-+-|         +.+++..+.++++.+.-|..+++-
T Consensus        75 sgs~~~~vl---~~~~~~g~~fvg~HPm~g~~~~i~a~d~~a~~~l~~L~~~lG~~vv~~  131 (232)
T 3dfu_A           75 SLTHGITVM---DPLETSGGIVMSAHPIGQDRWVASALDELGETIVGLLVGELGGSIVEI  131 (232)
T ss_dssp             CSSCCGGGG---HHHHHTTCEEEEEEEEETTEEEEEESSHHHHHHHHHHHHHTTCEECCC
T ss_pred             CCcCHHHHH---HHHHhCCCcEEEeeeCCCCceeeeCCCHHHHHHHHHHHHHhCCEEEEe
Confidence            5  333333   333466765442221         235556778888888877655544

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=93.36  E-value=0.083  Score=49.43  Aligned_cols=82  Identities=17%  Similarity=0.161  Sum_probs=45.8

Q ss_pred             eEEEeecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecCC---CC--cchhhhhcCCCCCCeeecCCHHH
Q 022057           23 RFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTM   96 (303)
Q Consensus        23 ~~~~~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~~---~g--~d~~~~~g~~~~~gv~v~~dl~~   96 (303)
                      .+--.++++...++||+|+|+ |.||..++..+....-. +|+ .+|.+.   .|  .|+...........+...+|+++
T Consensus         7 ~~~~~~~~~~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~-L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~   84 (331)
T 4aj2_A            7 LIVNLLKEEQVPQNKITVVGV-GAVGMACAISILMKDLADELA-LVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSV   84 (331)
T ss_dssp             HEEECCC---CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGG
T ss_pred             hhhcccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEE-EEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHH
Confidence            444445555555789999998 99999999888765432 444 577532   01  11111111101112333567775


Q ss_pred             HHhccccCCCccEEEEc
Q 022057           97 VLGSISQSKARAVVIDF  113 (303)
Q Consensus        97 ~l~~~~~~~~~DVvIDf  113 (303)
                       +      .++|+||-.
T Consensus        85 -~------~~aDiVvi~   94 (331)
T 4aj2_A           85 -T------ANSKLVIIT   94 (331)
T ss_dssp             -G------TTEEEEEEC
T ss_pred             -h------CCCCEEEEc
Confidence             4      589998864

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=93.28  E-value=0.12  Score=47.95  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=25.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (303)
                      ++||+|+|+ |.||..++..+... ++ +|+ .+|.+
T Consensus         5 ~~kI~iiGa-G~vG~~~a~~l~~~-~~~~v~-l~Di~   38 (321)
T 3p7m_A            5 RKKITLVGA-GNIGGTLAHLALIK-QLGDVV-LFDIA   38 (321)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCCEEE-EECSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCceEE-EEeCC
Confidence            479999997 99999999988754 44 654 57754

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=93.22  E-value=0.2  Score=44.74  Aligned_cols=31  Identities=16%  Similarity=0.262  Sum_probs=25.8

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKA-RGMEVAGAI   67 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~v   67 (303)
                      ||.|.|++|.+|+.+++.+.+. .+.++++..
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~   32 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASD   32 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEE
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence            5899999999999999999876 467777643

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=93.18  E-value=0.075  Score=49.47  Aligned_cols=38  Identities=21%  Similarity=0.274  Sum_probs=27.5

Q ss_pred             CCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        32 ~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      .++++||+|+|+ |.+|..++-.+...+-+.=+..+|.+
T Consensus         6 ~~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A            6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            344689999998 99999999888765533333457753

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=93.15  E-value=0.16  Score=47.13  Aligned_cols=64  Identities=19%  Similarity=0.169  Sum_probs=42.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -++|+|+|+ |+||+.+++.+. .-++++++ +|+..  .....+.      ......+++++++      .+|+|+-..
T Consensus       139 g~tvGIiG~-G~IG~~vA~~l~-~~G~~V~~-~dr~~--~~~~~~~------~~~~~~~l~ell~------~aDiV~l~~  201 (315)
T 3pp8_A          139 EFSVGIMGA-GVLGAKVAESLQ-AWGFPLRC-WSRSR--KSWPGVE------SYVGREELRAFLN------QTRVLINLL  201 (315)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHH-TTTCCEEE-EESSC--CCCTTCE------EEESHHHHHHHHH------TCSEEEECC
T ss_pred             CCEEEEEee-CHHHHHHHHHHH-HCCCEEEE-EcCCc--hhhhhhh------hhcccCCHHHHHh------hCCEEEEec
Confidence            378999998 999999999887 45888876 56532  1111000      0011257889884      799998665


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       202 P  202 (315)
T 3pp8_A          202 P  202 (315)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=93.15  E-value=0.06  Score=49.99  Aligned_cols=33  Identities=27%  Similarity=0.410  Sum_probs=25.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (303)
                      |||+|+|+ |.||..++..+...+-. +|+ .+|.+
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~-l~D~~   34 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVV-MVDIK   34 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEE-EECSS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEeCc
Confidence            69999998 99999999988765533 554 57754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.15  E-value=0.44  Score=46.26  Aligned_cols=158  Identities=14%  Similarity=0.199  Sum_probs=82.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-c---CCHHHHHhccccCCCccEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVv  110 (303)
                      .|||.|+|+ |++|+.+++.+. ..+.+++ ++|.+.  ..+..+.   ..+++++ .   ++.+-+.++  .-.++|++
T Consensus         3 ~M~iiI~G~-G~vG~~la~~L~-~~~~~v~-vId~d~--~~~~~~~---~~~~~~~i~Gd~~~~~~L~~A--gi~~ad~~   72 (461)
T 4g65_A            3 AMKIIILGA-GQVGGTLAENLV-GENNDIT-IVDKDG--DRLRELQ---DKYDLRVVNGHASHPDVLHEA--GAQDADML   72 (461)
T ss_dssp             CEEEEEECC-SHHHHHHHHHTC-STTEEEE-EEESCH--HHHHHHH---HHSSCEEEESCTTCHHHHHHH--TTTTCSEE
T ss_pred             cCEEEEECC-CHHHHHHHHHHH-HCCCCEE-EEECCH--HHHHHHH---HhcCcEEEEEcCCCHHHHHhc--CCCcCCEE
Confidence            589999998 999999999876 5678876 577642  1222222   1344433 2   233333221  12578999


Q ss_pred             EEcCCchhHH-HHHHHHHH-cCCCeEEeCCCCCHHHHHHHHHHhh--hcCCeEEEcCCCcHHHHHHHHHHHHhcc-----
Q 022057          111 IDFTDASTVY-DNVKQATA-FGMRSVVYVPHIQLETVSALSAFCD--KASMGCLIAPTLSIGSILLQQAAISASF-----  181 (303)
Q Consensus       111 IDfT~p~a~~-~~~~~al~-~g~~vVigTTG~~~e~~~~L~~~a~--~~~i~vv~a~N~SiGv~ll~~~a~~~~~-----  181 (303)
                      |=.|.-+... -....|.+ ++.+-++.-. .+++..+..+.+-.  .-++-.+++|-....-.+...+..--+.     
T Consensus        73 ia~t~~De~Nl~~~~~Ak~~~~~~~~iar~-~~~~~~~~~~~l~~~~~~giD~iIsPe~~~a~~I~~~i~~p~~~~~~~f  151 (461)
T 4g65_A           73 VAVTNTDETNMAACQVAFTLFNTPNRIARI-RSPQYLAQKEALFKSGAIPVDHLIAPEELVTSYIERLIQYPGALQVVSF  151 (461)
T ss_dssp             EECCSCHHHHHHHHHHHHHHHCCSSEEEEC-CCHHHHTTHHHHTTTSSSCCSEEECHHHHHHHHHHHHHTSTTCSEEEEE
T ss_pred             EEEcCChHHHHHHHHHHHHhcCCccceeEe-ccchhhhhhhhhhhcccCCcceeecHHHHHHHHHHHhccCCCeEEEEEe
Confidence            8777655432 22233333 3666555432 33333333333333  3456778887766655444433211110     


Q ss_pred             CCCcEEEEEccCCCCCCC-cHHHH
Q 022057          182 HYKNVEIVESRPNARDFP-SPDAT  204 (303)
Q Consensus       182 ~~~dieIiE~Hh~K~DaP-SGTA~  204 (303)
                      ..-.++++|..- ..|+| .|+.+
T Consensus       152 ~~g~~~l~e~~v-~~~s~l~g~~l  174 (461)
T 4g65_A          152 AEEKVSLVAVKA-YYGGPLVGNAL  174 (461)
T ss_dssp             TTTTEEEEEEEC-CTTSSSTTCBH
T ss_pred             ccceEEEEEEEe-cCCCeecCCcH
Confidence            123577777642 22333 45544

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=93.15  E-value=0.27  Score=44.96  Aligned_cols=32  Identities=22%  Similarity=0.281  Sum_probs=27.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      |++|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~   32 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLE-KGYEVHGIK   32 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEE
Confidence            46899999999999999999886 478887643

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=93.10  E-value=0.31  Score=43.45  Aligned_cols=30  Identities=33%  Similarity=0.506  Sum_probs=26.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~   66 (303)
                      |||.|.|++|.+|+.+++.+.+ .+.++++.
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~-~G~~V~~~   30 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLA-RGLEVAVL   30 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEEE
T ss_pred             CEEEEEeCCcHHHHHHHHHHHH-CCCEEEEE
Confidence            4899999999999999998885 57888764

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=93.07  E-value=0.67  Score=40.42  Aligned_cols=86  Identities=13%  Similarity=0.171  Sum_probs=55.0

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID  112 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvID  112 (303)
                      +|.++.|.|++|.+|+.+++.+.+ .+.+++....++.  .....               +.+.+...  ..++. +..|
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~-~G~~v~~~~~~~~--~~~~~---------------~~~~~~~~--~~~~~~~~~D   65 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLA-KGYSVTVTYHSDT--TAMET---------------MKETYKDV--EERLQFVQAD   65 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHH---------------HHHHTGGG--GGGEEEEECC
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHH-CCCEEEEEcCCCh--HHHHH---------------HHHHHHhc--CCceEEEEec
Confidence            456799999999999999999885 5888876544321  00011               11111100  01222 3458


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .+.++.+.+.+..+.+.  ++++|+-..|
T Consensus        66 l~~~~~v~~~~~~~~~~~g~id~lv~~Ag   94 (264)
T 3i4f_A           66 VTKKEDLHKIVEEAMSHFGKIDFLINNAG   94 (264)
T ss_dssp             TTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence            89999888888777665  7899987766

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=93.03  E-value=0.31  Score=45.98  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=28.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      |++|.|.|++|.+|+.+++.+. ..+.++++....
T Consensus        69 ~~~vlVTGatG~iG~~l~~~L~-~~g~~V~~~~R~  102 (427)
T 4f6c_A           69 LGNTLLTGATGFLGAYLIEALQ-GYSHRIYCFIRA  102 (427)
T ss_dssp             CEEEEEECTTSHHHHHHHHHHT-TTEEEEEEEEEC
T ss_pred             CCEEEEecCCcHHHHHHHHHHH-cCCCEEEEEECC
Confidence            6799999999999999999984 568888876543

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=93.00  E-value=0.67  Score=42.13  Aligned_cols=33  Identities=18%  Similarity=0.147  Sum_probs=27.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      +++|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   41 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQT-MGATVKGYSL   41 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CCEEEEECCCchHHHHHHHHHHh-CCCeEEEEeC
Confidence            36899999999999999999886 5788887543

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=92.99  E-value=0.18  Score=45.90  Aligned_cols=33  Identities=24%  Similarity=0.395  Sum_probs=26.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc--EEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~--eLvg~vd~~   70 (303)
                      +|||+|+|+ |.||..++..+... +.  +++ .+|++
T Consensus         7 ~mkI~IiGa-G~vG~~~a~~l~~~-g~~~~V~-l~d~~   41 (319)
T 1lld_A            7 PTKLAVIGA-GAVGSTLAFAAAQR-GIAREIV-LEDIA   41 (319)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCCSEEE-EECSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCCCEEE-EEeCC
Confidence            579999998 99999999988754 55  665 56654

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=92.99  E-value=0.7  Score=40.56  Aligned_cols=85  Identities=18%  Similarity=0.246  Sum_probs=53.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++...+++.  ....+.              .+++.+.   ..+.. +..|.+
T Consensus        27 k~vlVTGas~gIG~~la~~l~~-~G~~v~i~~~r~~--~~~~~~--------------~~~l~~~---~~~~~~~~~Dl~   86 (267)
T 4iiu_A           27 RSVLVTGASKGIGRAIARQLAA-DGFNIGVHYHRDA--AGAQET--------------LNAIVAN---GGNGRLLSFDVA   86 (267)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH--------------HHHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCch--HHHHHH--------------HHHHHhc---CCceEEEEecCC
Confidence            4799999999999999999885 6888766554431  111111              1122110   01222 345888


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++|+-..|.
T Consensus        87 ~~~~~~~~~~~~~~~~g~id~li~nAg~  114 (267)
T 4iiu_A           87 NREQCREVLEHEIAQHGAWYGVVSNAGI  114 (267)
T ss_dssp             CHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHhCCccEEEECCCC
Confidence            898888877766554  68888877653

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=92.96  E-value=0.14  Score=47.68  Aligned_cols=62  Identities=24%  Similarity=0.289  Sum_probs=43.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ..+|+|+|+ |+||+.+++.+. .-++++++ +|+... ...       ... +. +.++++++.      .+|+|+...
T Consensus       146 g~~vgIiG~-G~IG~~~A~~l~-~~G~~V~~-~d~~~~-~~~-------~~~-~~-~~~l~ell~------~aDvV~~~~  206 (331)
T 1xdw_A          146 NCTVGVVGL-GRIGRVAAQIFH-GMGATVIG-EDVFEI-KGI-------EDY-CT-QVSLDEVLE------KSDIITIHA  206 (331)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHH-HTTCEEEE-ECSSCC-CSC-------TTT-CE-ECCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEECc-CHHHHHHHHHHH-HCCCEEEE-ECCCcc-HHH-------Hhc-cc-cCCHHHHHh------hCCEEEEec
Confidence            378999998 999999999887 46888764 675421 111       111 22 458999884      689999765


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       207 p  207 (331)
T 1xdw_A          207 P  207 (331)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=92.87  E-value=0.33  Score=43.59  Aligned_cols=31  Identities=26%  Similarity=0.311  Sum_probs=26.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      ++|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         4 ~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~   34 (345)
T 2z1m_A            4 KRALITGIRGQDGAYLAKLLLE-KGYEVYGAD   34 (345)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEE
Confidence            6899999999999999999886 578887643

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=92.77  E-value=0.25  Score=46.00  Aligned_cols=95  Identities=18%  Similarity=0.179  Sum_probs=53.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-e---cCCHHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-V---MSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v---~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      -+|.|+|++|.+|...++.+....+.++++....+   ... +++   .++|.. +   .+++.+.+.+. ....+|+++
T Consensus       173 ~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~---~~~-~~~---~~lGad~vi~~~~~~~~~v~~~-~~~g~Dvvi  244 (363)
T 4dvj_A          173 PAILIVGGAGGVGSIAVQIARQRTDLTVIATASRP---ETQ-EWV---KSLGAHHVIDHSKPLAAEVAAL-GLGAPAFVF  244 (363)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSH---HHH-HHH---HHTTCSEEECTTSCHHHHHHTT-CSCCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCH---HHH-HHH---HHcCCCEEEeCCCCHHHHHHHh-cCCCceEEE
Confidence            47999997799999999877654678887644321   111 111   122321 1   12444444321 223689999


Q ss_pred             EcCCchhHHHHHHHHHH-cCCCeEEeCC
Q 022057          112 DFTDASTVYDNVKQATA-FGMRSVVYVP  138 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~-~g~~vVigTT  138 (303)
                      |++......+....+++ .|.=+++|.+
T Consensus       245 d~~g~~~~~~~~~~~l~~~G~iv~~g~~  272 (363)
T 4dvj_A          245 STTHTDKHAAEIADLIAPQGRFCLIDDP  272 (363)
T ss_dssp             ECSCHHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             ECCCchhhHHHHHHHhcCCCEEEEECCC
Confidence            99875544444444444 4444445543

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=92.68  E-value=0.7  Score=41.64  Aligned_cols=84  Identities=18%  Similarity=0.220  Sum_probs=54.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++.              +++-..   ..++. +..|.|
T Consensus        32 k~vlVTGas~gIG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~l~~~---~~~~~~~~~Dv~   90 (301)
T 3tjr_A           32 RAAVVTGGASGIGLATATEFAR-RGARLVL-SDVDQ--PALEQAV--------------NGLRGQ---GFDAHGVVCDVR   90 (301)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHhc---CCceEEEEccCC
Confidence            4699999999999999999885 5788765 44431  1111111              111110   01222 356889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++|+-..|.
T Consensus        91 d~~~v~~~~~~~~~~~g~id~lvnnAg~  118 (301)
T 3tjr_A           91 HLDEMVRLADEAFRLLGGVDVVFSNAGI  118 (301)
T ss_dssp             CHHHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence            999888888777665  78999877763

>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}

Probab=92.66  E-value=0.44  Score=45.55  Aligned_cols=118  Identities=13%  Similarity=0.099  Sum_probs=61.0

Q ss_pred             CCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-Ceee-cCCHHHHHhccccCCCc
Q 022057           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPV-MSDLTMVLGSISQSKAR  107 (303)
Q Consensus        30 ~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v-~~dl~~~l~~~~~~~~~  107 (303)
                      .|..|++||+|+|. |.-...++..+.+..+++.+.+.+.+. +.  ..+.    .. -+++ +.|.+.+++- ++..++
T Consensus        19 ~~~~m~~~IlIlG~-g~r~~al~~~~a~~~g~~~v~~~~~~~-~~--~~~~----~~~~~~~~~~d~~~l~~~-~~~~~~   89 (452)
T 2qk4_A           19 YFQSMAARVLIIGS-GGREHTLAWKLAQSHHVKQVLVAPGNA-GT--ACSE----KISNTAISISDHTALAQF-CKEKKI   89 (452)
T ss_dssp             ---CCSEEEEEEEC-SHHHHHHHHHHTTCTTEEEEEEEECCG-GG--SBSS----SEEECCCCSSCHHHHHHH-HHHHTC
T ss_pred             cccccCcEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCh-hh--hhhc----cccccccCCCCHHHHHHH-HHHcCC
Confidence            34446689999997 632234556666677888665443221 11  1111    11 1111 4566665431 122468


Q ss_pred             cEEEEcCCchhH--HHHHHHHHHcCCCeEEeCC--CCCH-HHHHHHHHHhhhcCCeE
Q 022057          108 AVVIDFTDASTV--YDNVKQATAFGMRSVVYVP--HIQL-ETVSALSAFCDKASMGC  159 (303)
Q Consensus       108 DVvIDfT~p~a~--~~~~~~al~~g~~vVigTT--G~~~-e~~~~L~~~a~~~~i~v  159 (303)
                      |+|+-.  ++..  ...+..+.+.|++++ |.+  .... .+....++++++.|+|+
T Consensus        90 d~V~~~--~E~~~~~~~~~~l~~~gi~~~-g~~~~~~~~~~dK~~~k~~l~~~gip~  143 (452)
T 2qk4_A           90 EFVVVG--PEAPLAAGIVGNLRSAGVQCF-GPTAEAAQLESSKRFAKEFMDRHGIPT  143 (452)
T ss_dssp             CEEEEC--SSHHHHTTHHHHHHHTTCCEE-SCCTTTTHHHHBHHHHHHHHHHTTCCB
T ss_pred             CEEEEC--CcHHHHHHHHHHHHhcCCcEe-CcCHHHHHHhcCHHHHHHHHHHCCCCC
Confidence            988743  3332  245555667899976 433  2211 23345667788888774

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=92.64  E-value=0.38  Score=43.62  Aligned_cols=105  Identities=15%  Similarity=0.147  Sum_probs=58.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ..|+.|+|+ |.||+.++..+.+. +.++. +++++.  ..+.+++.    .++... +++++       .++|+||..|
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~-G~~v~-V~nRt~--~ka~~la~----~~~~~~-~~~~l-------~~~DiVInaT  180 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQ-GLQVS-VLNRSS--RGLDFFQR----LGCDCF-MEPPK-------SAFDLIINAT  180 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSSC--TTHHHHHH----HTCEEE-SSCCS-------SCCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHHH----CCCeEe-cHHHh-------ccCCEEEEcc
Confidence            468999998 99999999988865 46654 566653  23333331    122221 22222       3689999887


Q ss_pred             Cch-----hH-HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057          115 DAS-----TV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus       115 ~p~-----a~-~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      +..     .. .+.+...++.+. +|+-.. +.+ + ..+.+.|++.|.+++
T Consensus       181 p~Gm~~~~~l~~~~l~~~l~~~~-~v~D~v-Y~P-~-T~ll~~A~~~G~~~~  228 (269)
T 3phh_A          181 SASLHNELPLNKEVLKGYFKEGK-LAYDLA-YGF-L-TPFLSLAKELKTPFQ  228 (269)
T ss_dssp             TTCCCCSCSSCHHHHHHHHHHCS-EEEESC-CSS-C-CHHHHHHHHTTCCEE
T ss_pred             cCCCCCCCCCChHHHHhhCCCCC-EEEEeC-CCC-c-hHHHHHHHHCcCEEE
Confidence            532     12 232332444443 443322 222 2 236777788787755

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=92.63  E-value=0.11  Score=49.73  Aligned_cols=60  Identities=15%  Similarity=0.109  Sum_probs=40.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|. |+||+.+++.+. .-++++.+ +|+..  ..    .    . ....+.+++++++      .+|+|+-..
T Consensus       119 gktvGIIGl-G~IG~~vA~~l~-a~G~~V~~-~d~~~--~~----~----~-~~~~~~sl~ell~------~aDiV~l~~  178 (381)
T 3oet_A          119 DRTIGIVGV-GNVGSRLQTRLE-ALGIRTLL-CDPPR--AA----R----G-DEGDFRTLDELVQ------EADVLTFHT  178 (381)
T ss_dssp             GCEEEEECC-SHHHHHHHHHHH-HTTCEEEE-ECHHH--HH----T----T-CCSCBCCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEeE-CHHHHHHHHHHH-HCCCEEEE-ECCCh--HH----h----c-cCcccCCHHHHHh------hCCEEEEcC
Confidence            368999997 999999999887 45898875 56521  00    0    0 1112457778774      577777554

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=92.54  E-value=0.17  Score=42.42  Aligned_cols=32  Identities=25%  Similarity=0.292  Sum_probs=25.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      .+|.|.|++|.+|+.+++.+.. .+.++++ +++
T Consensus        40 ~~vlV~Ga~ggiG~~~~~~~~~-~G~~V~~-~~~   71 (198)
T 1pqw_A           40 ERVLIHSATGGVGMAAVSIAKM-IGARIYT-TAG   71 (198)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-HTCEEEE-EES
T ss_pred             CEEEEeeCCChHHHHHHHHHHH-cCCEEEE-EeC
Confidence            4799999889999999997764 4677765 444

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=92.50  E-value=1.2  Score=38.43  Aligned_cols=84  Identities=21%  Similarity=0.266  Sum_probs=53.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++.              +++.+.   ..... +..|.+
T Consensus        10 k~vlITGas~giG~~~a~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~~~~~---~~~~~~~~~D~~   68 (253)
T 3qiv_A           10 KVGIVTGSGGGIGQAYAEALAR-EGAAVVV-ADINA--EAAEAVA--------------KQIVAD---GGTAISVAVDVS   68 (253)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCEEEEEECCTT
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEE-EcCCH--HHHHHHH--------------HHHHhc---CCcEEEEEccCC
Confidence            4689999999999999999885 5788665 55431  1111111              111110   01122 345888


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++|+-..|.
T Consensus        69 ~~~~~~~~~~~~~~~~g~id~li~~Ag~   96 (253)
T 3qiv_A           69 DPESAKAMADRTLAEFGGIDYLVNNAAI   96 (253)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            888888887766654  78999887765

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=92.37  E-value=0.095  Score=47.51  Aligned_cols=121  Identities=12%  Similarity=0.098  Sum_probs=64.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .++.|+|+ |+||+.++..+... +..=+-+++++.  ..+.+++.   .++.....+++  +      .++|+||..|+
T Consensus       120 ~~vlvlGa-Ggaarav~~~L~~~-G~~~i~v~nRt~--~ka~~la~---~~~~~~~~~~~--~------~~~DivInaTp  184 (271)
T 1npy_A          120 AKVIVHGS-GGMAKAVVAAFKNS-GFEKLKIYARNV--KTGQYLAA---LYGYAYINSLE--N------QQADILVNVTS  184 (271)
T ss_dssp             SCEEEECS-STTHHHHHHHHHHT-TCCCEEEECSCH--HHHHHHHH---HHTCEEESCCT--T------CCCSEEEECSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHHC-CCCEEEEEeCCH--HHHHHHHH---HcCCccchhhh--c------ccCCEEEECCC
Confidence            58999998 99999999988754 654344676642  22333331   12222222222  2      47899998886


Q ss_pred             chhHH-------HHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHh
Q 022057          116 ASTVY-------DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (303)
Q Consensus       116 p~a~~-------~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~  179 (303)
                      .....       ..-...+..+.-++ -. -+++.+. .+.+.|++.|..++=    .+++ |+.|.++++
T Consensus       185 ~gm~~~~~~~~~~~~~~~l~~~~~v~-Dl-vY~P~~T-~ll~~A~~~G~~~i~----Gl~M-Lv~Qa~~~f  247 (271)
T 1npy_A          185 IGMKGGKEEMDLAFPKAFIDNASVAF-DV-VAMPVET-PFIRYAQARGKQTIS----GAAV-IVLQAVEQF  247 (271)
T ss_dssp             TTCTTSTTTTSCSSCHHHHHHCSEEE-EC-CCSSSSC-HHHHHHHHTTCEEEC----HHHH-HHHHHHHHH
T ss_pred             CCccCccccCCCCCCHHHcCCCCEEE-Ee-ecCCCCC-HHHHHHHHCCCEEEC----CHHH-HHHHHHHHH
Confidence            43211       11123444454333 21 1233222 467778888877541    2332 445555444

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=92.35  E-value=0.3  Score=46.31  Aligned_cols=50  Identities=24%  Similarity=0.247  Sum_probs=27.2

Q ss_pred             eeeecccccccccceEEEeecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057            9 HCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      |-.-||.|.|+-       -..|+-++.||+|+|. |..|+.+++++.+ -+++++.+-
T Consensus         5 ~~~~~~~~~~~~-------~~~~mm~~~~I~ilGg-G~lg~~l~~aa~~-lG~~v~~~d   54 (403)
T 3k5i_A            5 HHHHHHSSENLY-------FQGHMWNSRKVGVLGG-GQLGRMLVESANR-LNIQVNVLD   54 (403)
T ss_dssp             -----------------------CCSCCEEEEECC-SHHHHHHHHHHHH-HTCEEEEEE
T ss_pred             ccccccccccee-------EeccCCCCCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEE
Confidence            444577788852       2334333579999997 9999999998875 688887654

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=92.33  E-value=0.35  Score=46.67  Aligned_cols=62  Identities=21%  Similarity=0.094  Sum_probs=44.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|. |+||+.+++.+.. -++++.+ +|+...  .        ...+.....+++++++      .+|+|+-..
T Consensus       156 gktvGIIGl-G~IG~~vA~~l~~-~G~~V~~-yd~~~~--~--------~~~~~~~~~sl~ell~------~aDvV~lhv  216 (416)
T 3k5p_A          156 GKTLGIVGY-GNIGSQVGNLAES-LGMTVRY-YDTSDK--L--------QYGNVKPAASLDELLK------TSDVVSLHV  216 (416)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECTTCC--C--------CBTTBEECSSHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHH-CCCEEEE-ECCcch--h--------cccCcEecCCHHHHHh------hCCEEEEeC
Confidence            368999997 9999999998774 5898775 675320  0        0112344578999995      699998655


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      +
T Consensus       217 P  217 (416)
T 3k5p_A          217 P  217 (416)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=92.33  E-value=1.3  Score=39.47  Aligned_cols=85  Identities=20%  Similarity=0.203  Sum_probs=53.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      ..+.|.|++|.+|+.+++.+.+ .+.+++....++.  ....++.              +++-..   ..++. +..|.+
T Consensus        30 k~~lVTGas~GIG~aia~~la~-~G~~V~~~~~~~~--~~~~~~~--------------~~~~~~---~~~~~~~~~Dv~   89 (280)
T 4da9_A           30 PVAIVTGGRRGIGLGIARALAA-SGFDIAITGIGDA--EGVAPVI--------------AELSGL---GARVIFLRADLA   89 (280)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEecCCCHHHHHHHHHHHH-CCCeEEEEeCCCH--HHHHHHH--------------HHHHhc---CCcEEEEEecCC
Confidence            4689999999999999999885 6788765432221  1111111              111110   01222 345889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++|+-..|.
T Consensus        90 d~~~v~~~~~~~~~~~g~iD~lvnnAg~  117 (280)
T 4da9_A           90 DLSSHQATVDAVVAEFGRIDCLVNNAGI  117 (280)
T ss_dssp             SGGGHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            999988888877665  78999877665

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=92.32  E-value=0.24  Score=45.51  Aligned_cols=74  Identities=12%  Similarity=0.183  Sum_probs=43.6

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCc------EEEEEEecCCC-Cc---chhhhhcCCCC--CCeeecCCHHHHHhcc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDSHSV-GE---DIGMVCDMEQP--LEIPVMSDLTMVLGSI  101 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~------eLvg~vd~~~~-g~---d~~~~~g~~~~--~gv~v~~dl~~~l~~~  101 (303)
                      ++|||.|+|++|.+|+.++..+.....+      +|+. +|.... ..   ...++......  .++....++.+++   
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l-~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~---   78 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL-LEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAF---   78 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEE-ECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHT---
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEE-EeCCCchhhccchhhhhhcccccccCCeEeccChHHHh---
Confidence            4589999999999999999988764322      6665 665310 00   00111110001  1233346677776   


Q ss_pred             ccCCCccEEEEcC
Q 022057          102 SQSKARAVVIDFT  114 (303)
Q Consensus       102 ~~~~~~DVvIDfT  114 (303)
                         .++|+||...
T Consensus        79 ---~~~D~Vih~A   88 (327)
T 1y7t_A           79 ---KDADYALLVG   88 (327)
T ss_dssp             ---TTCSEEEECC
T ss_pred             ---CCCCEEEECC
Confidence               4789988764

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=92.32  E-value=0.12  Score=47.83  Aligned_cols=98  Identities=15%  Similarity=0.081  Sum_probs=54.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      -+|.|+|++|.+|...++.+. ..+.++++. .+... .+...-.|.  .. +....++.+.+.+......+|+++|++.
T Consensus       152 ~~VlV~Ga~g~iG~~~~q~a~-~~Ga~Vi~~-~~~~~-~~~~~~lGa--~~-i~~~~~~~~~~~~~~~~~g~D~vid~~g  225 (343)
T 3gaz_A          152 QTVLIQGGGGGVGHVAIQIAL-ARGARVFAT-ARGSD-LEYVRDLGA--TP-IDASREPEDYAAEHTAGQGFDLVYDTLG  225 (343)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEE-ECHHH-HHHHHHHTS--EE-EETTSCHHHHHHHHHTTSCEEEEEESSC
T ss_pred             CEEEEecCCCHHHHHHHHHHH-HCCCEEEEE-eCHHH-HHHHHHcCC--CE-eccCCCHHHHHHHHhcCCCceEEEECCC
Confidence            479999988999999999766 568898887 43210 111111111  11 2212344443322111236899999987


Q ss_pred             chhHHHHHHHHHHcCCCeEEeCCC
Q 022057          116 ASTVYDNVKQATAFGMRSVVYVPH  139 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~vVigTTG  139 (303)
                      .+.....+......|.=+++|..+
T Consensus       226 ~~~~~~~~~~l~~~G~iv~~g~~~  249 (343)
T 3gaz_A          226 GPVLDASFSAVKRFGHVVSCLGWG  249 (343)
T ss_dssp             THHHHHHHHHEEEEEEEEESCCCS
T ss_pred             cHHHHHHHHHHhcCCeEEEEcccC
Confidence            655555555444455555556543

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=92.27  E-value=0.4  Score=44.06  Aligned_cols=31  Identities=32%  Similarity=0.301  Sum_probs=25.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      -+|.|+|++|.+|+.+++.+.. .+.++++..
T Consensus       171 ~~vlV~Ga~ggiG~~~~~~a~~-~Ga~V~~~~  201 (347)
T 2hcy_A          171 HWVAISGAAGGLGSLAVQYAKA-MGYRVLGID  201 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCcEEEEc
Confidence            4799999999999999997764 577877643

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=92.16  E-value=0.41  Score=42.26  Aligned_cols=75  Identities=21%  Similarity=0.205  Sum_probs=50.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++.. +++.  ....       .                   ..+. +..|.+
T Consensus        29 k~vlVTGas~gIG~aia~~l~~-~G~~V~~~-~r~~--~~~~-------~-------------------~~~~~~~~Dv~   78 (260)
T 3un1_A           29 KVVVITGASQGIGAGLVRAYRD-RNYRVVAT-SRSI--KPSA-------D-------------------PDIHTVAGDIS   78 (260)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHH-TTCEEEEE-ESSC--CCCS-------S-------------------TTEEEEESCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEE-eCCh--hhcc-------c-------------------CceEEEEccCC
Confidence            4689999999999999999885 58887754 4331  0000       0                   0111 234788


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++|+-..|.
T Consensus        79 d~~~v~~~~~~~~~~~g~iD~lv~nAg~  106 (260)
T 3un1_A           79 KPETADRIVREGIERFGRIDSLVNNAGV  106 (260)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEECCCC
Confidence            888888777766655  78888877653

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=92.14  E-value=0.55  Score=42.31  Aligned_cols=30  Identities=20%  Similarity=0.419  Sum_probs=26.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~   66 (303)
                      |||.|.|++|.+|+.+++.+.+ .+.++++.
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~-~G~~V~~~   30 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQ-NGHDVIIL   30 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEE
Confidence            4899999999999999999885 57888764

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=92.11  E-value=0.19  Score=48.73  Aligned_cols=34  Identities=15%  Similarity=0.144  Sum_probs=28.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      |++|.|.|++|.+|+.+++.+ ...+.++++....
T Consensus       150 ~~~VLVTGatG~iG~~l~~~L-~~~g~~V~~l~R~  183 (508)
T 4f6l_B          150 LGNTLLTGATGFLGAYLIEAL-QGYSHRIYCFIRA  183 (508)
T ss_dssp             CEEEEESCTTSHHHHHHHHHT-BTTEEEEEEEEES
T ss_pred             CCeEEEECCccchHHHHHHHH-HhcCCEEEEEECC
Confidence            689999999999999999988 4568888877543

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=92.09  E-value=0.11  Score=48.06  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=26.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      -+|.|+|++|.+|...++.+. ..+.++++...
T Consensus       161 ~~VlV~Gasg~iG~~~~~~a~-~~Ga~Vi~~~~  192 (342)
T 4eye_A          161 ETVLVLGAAGGIGTAAIQIAK-GMGAKVIAVVN  192 (342)
T ss_dssp             CEEEESSTTSHHHHHHHHHHH-HTTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HcCCEEEEEeC
Confidence            479999999999999998766 46788876553

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=92.07  E-value=1.5  Score=38.59  Aligned_cols=85  Identities=20%  Similarity=0.263  Sum_probs=53.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.....+.   +..+              .+.+.+.+  ...++. +..|.+
T Consensus        30 k~vlITGas~gIG~~la~~l~~-~G~~V~~~~r~~~---~~~~--------------~~~~~~~~--~~~~~~~~~~D~~   89 (271)
T 4iin_A           30 KNVLITGASKGIGAEIAKTLAS-MGLKVWINYRSNA---EVAD--------------ALKNELEE--KGYKAAVIKFDAA   89 (271)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCH---HHHH--------------HHHHHHHH--TTCCEEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCCH---HHHH--------------HHHHHHHh--cCCceEEEECCCC
Confidence            5799999999999999999885 5888776443221   1110              01112211  001222 234788


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++|+-..|.
T Consensus        90 ~~~~v~~~~~~~~~~~g~id~li~nAg~  117 (271)
T 4iin_A           90 SESDFIEAIQTIVQSDGGLSYLVNNAGV  117 (271)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence            888888888776654  78999877663

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=91.99  E-value=0.62  Score=41.51  Aligned_cols=80  Identities=24%  Similarity=0.235  Sum_probs=52.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++.               +.+.     ..+ -+..|.+
T Consensus        28 k~vlVTGas~GIG~aia~~l~~-~G~~V~~-~~r~~--~~~~~~~---------------~~~~-----~~~~~~~~Dv~   83 (277)
T 4dqx_A           28 RVCIVTGGGSGIGRATAELFAK-NGAYVVV-ADVNE--DAAVRVA---------------NEIG-----SKAFGVRVDVS   83 (277)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESSH--HHHHHHH---------------HHHC-----TTEEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH---------------HHhC-----CceEEEEecCC
Confidence            5688999999999999999885 5777764 44431  1111111               1111     122 2446889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++|+-..|
T Consensus        84 d~~~v~~~~~~~~~~~g~iD~lv~nAg  110 (277)
T 4dqx_A           84 SAKDAESMVEKTTAKWGRVDVLVNNAG  110 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            999888888777665  7888887765

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=91.98  E-value=0.25  Score=44.63  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=27.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      +.+|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus         5 ~~~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r   37 (337)
T 2c29_D            5 SETVCVTGASGFIGSWLVMRLLE-RGYTVRATVR   37 (337)
T ss_dssp             -CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHHHHH-CCCEEEEEEC
Confidence            46899999999999999999885 5788887654

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=91.82  E-value=0.062  Score=50.15  Aligned_cols=34  Identities=26%  Similarity=0.265  Sum_probs=26.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (303)
                      ++||+|+|+ |.||..++..+...+-. +|+ .+|.+
T Consensus         5 ~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~-l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGA-GFVGSSYAFALINQGITDELV-VIDVN   39 (326)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEE-EEecc
Confidence            579999998 99999999988865533 554 56753

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=91.76  E-value=0.7  Score=40.87  Aligned_cols=81  Identities=20%  Similarity=0.204  Sum_probs=53.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+..               +.+.     .+. -+..|.+
T Consensus        12 k~vlVTGas~gIG~aia~~l~~-~G~~V~~-~~r~~--~~~~~~~---------------~~~~-----~~~~~~~~Dv~   67 (271)
T 3tzq_B           12 KVAIITGACGGIGLETSRVLAR-AGARVVL-ADLPE--TDLAGAA---------------ASVG-----RGAVHHVVDLT   67 (271)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EECTT--SCHHHHH---------------HHHC-----TTCEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EcCCH--HHHHHHH---------------HHhC-----CCeEEEECCCC
Confidence            4689999999999999999885 5788764 45432  1111111               1111     122 2456889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++++-..|.
T Consensus        68 ~~~~v~~~~~~~~~~~g~id~lv~nAg~   95 (271)
T 3tzq_B           68 NEVSVRALIDFTIDTFGRLDIVDNNAAH   95 (271)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            998888888776665  78998876654

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=91.70  E-value=1.6  Score=37.89  Aligned_cols=84  Identities=24%  Similarity=0.332  Sum_probs=52.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf  113 (303)
                      ..++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++.              +++-..   ..++. +..|.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~~~~~---~~~~~~~~~D~   60 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVK-DGFAVAI-ADYND--ATAKAVA--------------SEINQA---GGHAVAVKVDV   60 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCCEEEEECCT
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH--------------HHHHhc---CCcEEEEEecC
Confidence            35689999999999999999885 5778765 44431  1111110              111100   01222 34588


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      +.++.+.+.+..+.+.  ++++|+-..|
T Consensus        61 ~~~~~v~~~~~~~~~~~g~id~lv~nAg   88 (256)
T 1geg_A           61 SDRDQVFAAVEQARKTLGGFDVIVNNAG   88 (256)
T ss_dssp             TSHHHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            8888888877766554  6888887665

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=91.68  E-value=0.59  Score=40.70  Aligned_cols=81  Identities=23%  Similarity=0.241  Sum_probs=53.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++               .+.+.     ..+ -+..|.+
T Consensus        10 k~vlITGas~gIG~~~a~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~~~-----~~~~~~~~D~~   65 (261)
T 3n74_A           10 KVALITGAGSGFGEGMAKRFAK-GGAKVVI-VDRDK--AGAERV---------------AGEIG-----DAALAVAADIS   65 (261)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHH---------------HHHHC-----TTEEEEECCTT
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEE-EcCCH--HHHHHH---------------HHHhC-----CceEEEEecCC
Confidence            4799999999999999999885 5788665 45431  111111               11111     122 2456889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++|+-..|.
T Consensus        66 ~~~~~~~~~~~~~~~~g~id~li~~Ag~   93 (261)
T 3n74_A           66 KEADVDAAVEAALSKFGKVDILVNNAGI   93 (261)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence            998888888777665  78999877653

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=91.61  E-value=0.23  Score=47.26  Aligned_cols=60  Identities=18%  Similarity=0.151  Sum_probs=42.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ..+|+|+|. |+||+.+++.+.. -++++.+ +|+..  .. .   +    .+. .+.+++++++      .+|+|+-..
T Consensus       116 g~tvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~--~~-~---~----~g~-~~~~l~ell~------~aDvV~l~~  175 (380)
T 2o4c_A          116 ERTYGVVGA-GQVGGRLVEVLRG-LGWKVLV-CDPPR--QA-R---E----PDG-EFVSLERLLA------EADVISLHT  175 (380)
T ss_dssp             GCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECHHH--HH-H---S----TTS-CCCCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEeC-CHHHHHHHHHHHH-CCCEEEE-EcCCh--hh-h---c----cCc-ccCCHHHHHH------hCCEEEEec
Confidence            368999997 9999999998874 6898865 66531  00 0   1    122 2467888884      689988765

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=91.61  E-value=1.4  Score=38.33  Aligned_cols=81  Identities=20%  Similarity=0.197  Sum_probs=51.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      ..+.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+..              ++ +.     .++. +..|.+
T Consensus         8 k~~lVTGas~gIG~aia~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~-~~-----~~~~~~~~Dv~   63 (257)
T 3tpc_A            8 RVFIVTGASSGLGAAVTRMLAQ-EGATVLG-LDLKP--PAGEEPA--------------AE-LG-----AAVRFRNADVT   63 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEE-EESSC--C--------------------------------CEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EeCCh--HHHHHHH--------------HH-hC-----CceEEEEccCC
Confidence            4689999999999999999885 5788765 45432  1111110              01 11     1222 345889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++...+.+..+.+.  ++++++-..|.
T Consensus        64 ~~~~v~~~~~~~~~~~g~id~lv~nAg~   91 (257)
T 3tpc_A           64 NEADATAALAFAKQEFGHVHGLVNCAGT   91 (257)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            998888888777665  78999877663

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=91.60  E-value=0.73  Score=41.16  Aligned_cols=83  Identities=19%  Similarity=0.239  Sum_probs=51.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      ..+.|.|++|.+|+.+++.+.+ .+..++. ++++.  ....++               .+.+..  ...++. +..|.+
T Consensus        29 k~~lVTGas~GIG~aia~~la~-~G~~V~~-~~r~~--~~~~~~---------------~~~l~~--~~~~~~~~~~Dv~   87 (283)
T 3v8b_A           29 PVALITGAGSGIGRATALALAA-DGVTVGA-LGRTR--TEVEEV---------------ADEIVG--AGGQAIALEADVS   87 (283)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESSH--HHHHHH---------------HHHHTT--TTCCEEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHH---------------HHHHHh--cCCcEEEEEccCC
Confidence            4689999999999999999885 5787765 44431  111111               111110  001122 345788


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++++-..|
T Consensus        88 d~~~v~~~~~~~~~~~g~iD~lVnnAg  114 (283)
T 3v8b_A           88 DELQMRNAVRDLVLKFGHLDIVVANAG  114 (283)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            898888888776664  6888886655

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=91.59  E-value=0.48  Score=42.17  Aligned_cols=102  Identities=20%  Similarity=0.197  Sum_probs=52.9

Q ss_pred             cccccccc--ceEEEeecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeec
Q 022057           14 HISQNVKA--KRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM   91 (303)
Q Consensus        14 ~~~~~~~~--~~~~~~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~   91 (303)
                      |-+..+.-  +++.+.+-.... ...+.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+.            
T Consensus         6 ~~~~~~~~~~~~~~~~~m~~~~-~k~~lVTGas~GIG~aia~~la~-~G~~V~~-~~r~~--~~~~~~------------   68 (272)
T 4dyv_A            6 HHSSGVDLGTENLYFQSMSKTG-KKIAIVTGAGSGVGRAVAVALAG-AGYGVAL-AGRRL--DALQET------------   68 (272)
T ss_dssp             -----------------------CCEEEETTTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHH------------
T ss_pred             cccccccCCcceeehhhhcCCC-CCEEEEeCCCcHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH------------
Confidence            33444433  666665533222 34578889999999999999885 5788765 45431  111111            


Q ss_pred             CCHHHHHhccccCCCcc-EEEEcCCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057           92 SDLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus        92 ~dl~~~l~~~~~~~~~D-VvIDfT~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                         .+.+.     .++. +..|.+.++.+.+.+..+.+.  ++++|+-..|.
T Consensus        69 ---~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~  112 (272)
T 4dyv_A           69 ---AAEIG-----DDALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAGT  112 (272)
T ss_dssp             ---HHHHT-----SCCEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             ---HHHhC-----CCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence               11111     1222 345889999888888776665  78999876653

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=91.55  E-value=1.6  Score=37.78  Aligned_cols=83  Identities=20%  Similarity=0.299  Sum_probs=52.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---EEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++....++.  ....++               .+.+..    ...+   +..|
T Consensus         5 k~~lVTGas~gIG~~ia~~l~~-~G~~V~~~~~~~~--~~~~~~---------------~~~~~~----~~~~~~~~~~D   62 (246)
T 3osu_A            5 KSALVTGASRGIGRSIALQLAE-EGYNVAVNYAGSK--EKAEAV---------------VEEIKA----KGVDSFAIQAN   62 (246)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH---------------HHHHHH----TTSCEEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHH---------------HHHHHh----cCCcEEEEEcc
Confidence            5689999999999999999884 5888765433221  111111               111111    1222   3457


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .+.++.+.+.+..+.+.  ++++|+-..|.
T Consensus        63 v~d~~~v~~~~~~~~~~~g~id~lv~nAg~   92 (246)
T 3osu_A           63 VADADEVKAMIKEVVSQFGSLDVLVNNAGI   92 (246)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            88888888887776655  78998877653

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=91.52  E-value=0.78  Score=39.24  Aligned_cols=86  Identities=19%  Similarity=0.188  Sum_probs=51.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf  113 (303)
                      |.++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+..              +++...  ...++. +..|.
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~~~~~--~~~~~~~~~~D~   61 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALAR-DGYALAL-GARSV--DRLEKIA--------------HELMQE--QGVEVFYHHLDV   61 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHH--HCCCEEEEECCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH--------------HHHHhh--cCCeEEEEEecc
Confidence            34689999999999999999885 5777654 44431  1111111              111100  001222 23478


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      +.++.+.+.+..+.+.  ++++++-..|.
T Consensus        62 ~~~~~v~~~~~~~~~~~g~id~li~~Ag~   90 (235)
T 3l77_A           62 SKAESVEEFSKKVLERFGDVDVVVANAGL   90 (235)
T ss_dssp             TCHHHHHHHCC-HHHHHSSCSEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence            8888887777666554  68888877653

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=91.51  E-value=0.18  Score=46.40  Aligned_cols=34  Identities=15%  Similarity=0.230  Sum_probs=26.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      |||+|+|+ |++|+.++-.+..++-+.=+..+|..
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~   34 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIA   34 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            79999998 99999999888776654333467853

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=91.50  E-value=0.49  Score=45.77  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=26.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ..||.|+|+ |..|..+++.+.. .|+.=+.++|.
T Consensus        40 ~~~VlvvG~-GGlGs~va~~La~-aGvg~i~ivD~   72 (434)
T 1tt5_B           40 TCKVLVIGA-GGLGCELLKNLAL-SGFRQIHVIDM   72 (434)
T ss_dssp             TCCEEEECS-STHHHHHHHHHHH-TTCCCEEEEEC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-cCCCEEEEEcC
Confidence            368999998 9999999999884 56655567774

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=91.48  E-value=1.1  Score=40.84  Aligned_cols=70  Identities=19%  Similarity=0.265  Sum_probs=40.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhhhhc-CCCCCCeeecCCHHHHHhccccCCCcc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARA  108 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~---g--~d~~~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (303)
                      |||+|+|+ |.||..++..+....-. +|+ .+|.+..   |  .|+..... ......+..++| .+.+      .++|
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~-L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~------~~aD   71 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIA-LVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLL------KGSE   71 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEE-EECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGG------TTCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEE-EEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHh------CCCC
Confidence            59999998 99999999988765433 554 5775320   1  11111110 001223444567 5555      4799


Q ss_pred             EEEEcC
Q 022057          109 VVIDFT  114 (303)
Q Consensus       109 VvIDfT  114 (303)
                      +||-..
T Consensus        72 iVViaa   77 (294)
T 1oju_A           72 IIVVTA   77 (294)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            988554

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=91.47  E-value=0.18  Score=47.12  Aligned_cols=71  Identities=23%  Similarity=0.203  Sum_probs=41.7

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecCC---CC--cchhhhhcCCCCCCeeecCCHHHHHhccccCCCc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~~---~g--~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (303)
                      .++||+|+|+ |.||..++..+....-+ +|+ .+|...   .|  .|+...........+..++|+++ +      .++
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~-L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~------~da   90 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVA-LVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-S------AGS   90 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEE-EECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-C------SSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEE-EEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-h------CCC
Confidence            4689999998 99999999988765432 544 577531   01  11111110001123344567776 4      589


Q ss_pred             cEEEEc
Q 022057          108 AVVIDF  113 (303)
Q Consensus       108 DVvIDf  113 (303)
                      |+||..
T Consensus        91 DiVIit   96 (330)
T 3ldh_A           91 KLVVIT   96 (330)
T ss_dssp             SEEEEC
T ss_pred             CEEEEe
Confidence            998854

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=91.45  E-value=0.42  Score=43.81  Aligned_cols=95  Identities=15%  Similarity=0.228  Sum_probs=52.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-e--c-CCHHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-V--M-SDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v--~-~dl~~~l~~~~~~~~~DVvI  111 (303)
                      -+|.|+|+ |.+|...++.+....+.+++++ +.+.  .. .+++   .++|.. +  + +++.+.+.+......+|+++
T Consensus       173 ~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~-~~~~--~~-~~~~---~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~  244 (345)
T 3jv7_A          173 STAVVIGV-GGLGHVGIQILRAVSAARVIAV-DLDD--DR-LALA---REVGADAAVKSGAGAADAIRELTGGQGATAVF  244 (345)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCCCEEEEE-ESCH--HH-HHHH---HHTTCSEEEECSTTHHHHHHHHHGGGCEEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCEEEEE-cCCH--HH-HHHH---HHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEE
Confidence            36999998 9999999998776556777764 4321  11 1111   122321 1  1 23333222111113689999


Q ss_pred             EcCCchhHHHHHHHHH-HcCCCeEEeCC
Q 022057          112 DFTDASTVYDNVKQAT-AFGMRSVVYVP  138 (303)
Q Consensus       112 DfT~p~a~~~~~~~al-~~g~~vVigTT  138 (303)
                      |++..+...+....++ ..|.=+++|.+
T Consensus       245 d~~G~~~~~~~~~~~l~~~G~iv~~G~~  272 (345)
T 3jv7_A          245 DFVGAQSTIDTAQQVVAVDGHISVVGIH  272 (345)
T ss_dssp             ESSCCHHHHHHHHHHEEEEEEEEECSCC
T ss_pred             ECCCCHHHHHHHHHHHhcCCEEEEECCC
Confidence            9987664444444444 45555556654

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=91.45  E-value=1.3  Score=39.03  Aligned_cols=85  Identities=18%  Similarity=0.201  Sum_probs=52.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf  113 (303)
                      ..+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++               .+.+..  ...++. +..|.
T Consensus        31 ~k~vlITGasggIG~~la~~L~~-~G~~V~~-~~r~~--~~~~~~---------------~~~l~~--~~~~~~~~~~Dl   89 (272)
T 1yb1_A           31 GEIVLITGAGHGIGRLTAYEFAK-LKSKLVL-WDINK--HGLEET---------------AAKCKG--LGAKVHTFVVDC   89 (272)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHH---------------HHHHHH--TTCCEEEEECCT
T ss_pred             CCEEEEECCCchHHHHHHHHHHH-CCCEEEE-EEcCH--HHHHHH---------------HHHHHh--cCCeEEEEEeeC
Confidence            36799999999999999999885 5788765 44431  111111               111110  001222 34588


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      +.++.+.+.+..+.+.  ++++|+-..|.
T Consensus        90 ~~~~~v~~~~~~~~~~~g~iD~li~~Ag~  118 (272)
T 1yb1_A           90 SNREDIYSSAKKVKAEIGDVSILVNNAGV  118 (272)
T ss_dssp             TCHHHHHHHHHHHHHHTCCCSEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHCCCCcEEEECCCc
Confidence            8888887777766553  68888877663

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=91.45  E-value=0.6  Score=39.90  Aligned_cols=80  Identities=15%  Similarity=0.200  Sum_probs=51.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf  113 (303)
                      ..+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ...                  +++.+++   .+.. +..|.
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~-~G~~V~~-~~r~~--~~~------------------~~~~~~~---~~~~~~~~D~   59 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHA-KGYRVGL-MARDE--KRL------------------QALAAEL---EGALPLPGDV   59 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHH------------------HHHHHHS---TTCEEEECCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EECCH--HHH------------------HHHHHHh---hhceEEEecC
Confidence            35799999999999999999885 5788765 44431  111                  1111100   1222 34578


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      +.++.+.+.+..+.+.  ++++|+-..|
T Consensus        60 ~~~~~~~~~~~~~~~~~~~id~li~~Ag   87 (234)
T 2ehd_A           60 REEGDWARAVAAMEEAFGELSALVNNAG   87 (234)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8888877777665543  6888887765

>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A

Probab=91.44  E-value=0.8  Score=43.69  Aligned_cols=98  Identities=14%  Similarity=0.147  Sum_probs=60.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEe-cCCC---Ccchhhhh----cCCC-----CCCeeec---CCHHHH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAID-SHSV---GEDIGMVC----DMEQ-----PLEIPVM---SDLTMV   97 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd-~~~~---g~d~~~~~----g~~~-----~~gv~v~---~dl~~~   97 (303)
                      |.||.|.|+||-+|+.-.+.+.+.|+ +++++..- ....   .+.+.++-    .+.+     ..++.++   +.+.++
T Consensus        21 mk~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aLaa~g~nv~~L~~q~~~f~p~~v~v~d~~~~~~~~~~v~~G~~~l~~~  100 (398)
T 2y1e_A           21 RLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAHLDTLLRQRAQTGVTNIAVADEHAAQRVGDIPYHGSDAATRL  100 (398)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTTEEEEEEEECSSCHHHHHHHHHHHCCCCEEESCHHHHHHHCCCSEESTTHHHHH
T ss_pred             ceEEEEEccCcHHHHHHHHHHHhCCCceEEEEEEecCCCHHHHHHHHHHcCCCEEEEcCHHHhhhcCCEEEecHHHHHHH
Confidence            57899999999999999999999887 99999876 3211   00001100    0000     0011111   123344


Q ss_pred             HhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEe
Q 022057           98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (303)
Q Consensus        98 l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVig  136 (303)
                      ...    .++|+|+-.-.-.+...-...|+++|+.+-..
T Consensus       101 a~~----~~~D~Vv~AIvG~aGL~PTlaAi~aGK~iaLA  135 (398)
T 2y1e_A          101 VEQ----TEADVVLNALVGALGLRPTLAALKTGARLALA  135 (398)
T ss_dssp             HHH----SCCSEEEECCCSGGGHHHHHHHHHHTCEEEEC
T ss_pred             hcC----CCCCEEEEeCcCHHHHHHHHHHHHCCCceEEc
Confidence            321    46899987766666677777788888887754

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=91.43  E-value=0.49  Score=42.16  Aligned_cols=31  Identities=19%  Similarity=0.306  Sum_probs=26.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~   32 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLE-NGYSVNTTI   32 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             CEEEEECChhHHHHHHHHHHHH-CCCEEEEEE
Confidence            4799999999999999999885 578888755

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=91.43  E-value=1.7  Score=38.54  Aligned_cols=84  Identities=17%  Similarity=0.195  Sum_probs=53.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      ..+.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+..              +++-..   ..++. +..|.+
T Consensus        25 k~~lVTGas~GIG~aia~~la~-~G~~V~~-~~r~~--~~~~~~~--------------~~l~~~---~~~~~~~~~Dv~   83 (279)
T 3sju_A           25 QTAFVTGVSSGIGLAVARTLAA-RGIAVYG-CARDA--KNVSAAV--------------DGLRAA---GHDVDGSSCDVT   83 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHTT---TCCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH--------------HHHHhc---CCcEEEEECCCC
Confidence            4699999999999999999885 5888764 44431  1111111              111110   01222 345889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++|+-..|.
T Consensus        84 d~~~v~~~~~~~~~~~g~id~lv~nAg~  111 (279)
T 3sju_A           84 STDEVHAAVAAAVERFGPIGILVNSAGR  111 (279)
T ss_dssp             CHHHHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCcEEEECCCC
Confidence            999888888777665  68899877653

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=91.42  E-value=0.85  Score=39.18  Aligned_cols=86  Identities=20%  Similarity=0.191  Sum_probs=51.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf  113 (303)
                      +.++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  .+..++.              +++...  ...++. +..|.
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~~~~~--~~~~~~~~~~D~   61 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLA-RGDRVAA-LDLSA--ETLEETA--------------RTHWHA--YADKVLRVRADV   61 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHSTT--TGGGEEEEECCT
T ss_pred             CCEEEEeCCCchHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH--------------HHHHHh--cCCcEEEEEecC
Confidence            45789999999999999999885 5777665 44431  1111110              111000  001122 34578


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      +.++.+.+.+..+.+.  ++++|+-..|.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~id~li~~Ag~   90 (250)
T 2cfc_A           62 ADEGDVNAAIAATMEQFGAIDVLVNNAGI   90 (250)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            8888887777665554  68888876653

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=91.36  E-value=0.1  Score=48.26  Aligned_cols=35  Identities=20%  Similarity=0.231  Sum_probs=26.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      .+||+|+|+ |.+|..++-.+...+-+.=+..+|.+
T Consensus         5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            489999998 99999999888765433333457753

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=91.31  E-value=0.76  Score=40.71  Aligned_cols=85  Identities=19%  Similarity=0.195  Sum_probs=53.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      ..+.|.|++|.+|+.+++.+.+ .+..++...+++.  ....++               .+.+..  ...++. +..|.+
T Consensus        28 k~~lVTGas~GIG~aia~~la~-~G~~Vv~~~~~~~--~~~~~~---------------~~~~~~--~~~~~~~~~~Dl~   87 (267)
T 3u5t_A           28 KVAIVTGASRGIGAAIAARLAS-DGFTVVINYAGKA--AAAEEV---------------AGKIEA--AGGKALTAQADVS   87 (267)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-HTCEEEEEESSCS--HHHHHH---------------HHHHHH--TTCCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHH---------------HHHHHh--cCCeEEEEEcCCC
Confidence            3589999999999999999885 5788876444331  111111               111111  001222 345889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++++-..|.
T Consensus        88 ~~~~v~~~~~~~~~~~g~iD~lvnnAG~  115 (267)
T 3u5t_A           88 DPAAVRRLFATAEEAFGGVDVLVNNAGI  115 (267)
T ss_dssp             CHHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            999888888777665  68888876653

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=91.24  E-value=1.1  Score=39.35  Aligned_cols=84  Identities=21%  Similarity=0.213  Sum_probs=52.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  .+..+..              +++-+.  ...++. +..|.+
T Consensus        11 k~vlVTGas~gIG~aia~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~l~~~--~~~~~~~~~~Dv~   70 (262)
T 3pk0_A           11 RSVVVTGGTKGIGRGIATVFAR-AGANVAV-AGRST--ADIDACV--------------ADLDQL--GSGKVIGVQTDVS   70 (262)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHTT--SSSCEEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH--------------HHHHhh--CCCcEEEEEcCCC
Confidence            4789999999999999999885 5777765 45431  1111111              111110  001222 345888


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++++=..|
T Consensus        71 ~~~~v~~~~~~~~~~~g~id~lvnnAg   97 (262)
T 3pk0_A           71 DRAQCDALAGRAVEEFGGIDVVCANAG   97 (262)
T ss_dssp             SHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            898888887776665  7888887665

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=91.14  E-value=0.19  Score=49.58  Aligned_cols=65  Identities=15%  Similarity=0.213  Sum_probs=43.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|+ |.||+.+++.+.. -+++++ ++|++.  ..... +   ...|+. +.++++++      ..+|+||+++
T Consensus       274 GktV~IiG~-G~IG~~~A~~lka-~Ga~Vi-v~d~~~--~~~~~-A---~~~Ga~-~~~l~e~l------~~aDvVi~at  337 (494)
T 3ce6_A          274 GKKVLICGY-GDVGKGCAEAMKG-QGARVS-VTEIDP--INALQ-A---MMEGFD-VVTVEEAI------GDADIVVTAT  337 (494)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHH-H---HHTTCE-ECCHHHHG------GGCSEEEECS
T ss_pred             cCEEEEEcc-CHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHH-H---HHcCCE-EecHHHHH------hCCCEEEECC
Confidence            468999998 9999999998774 577765 466532  11111 1   123444 24677776      3789999987


Q ss_pred             C
Q 022057          115 D  115 (303)
Q Consensus       115 ~  115 (303)
                      .
T Consensus       338 g  338 (494)
T 3ce6_A          338 G  338 (494)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=91.14  E-value=1.7  Score=38.00  Aligned_cols=84  Identities=11%  Similarity=0.131  Sum_probs=53.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++...+++.  ....+.               .+.+.+  ...++. +..|.|
T Consensus         5 k~vlVTGas~gIG~aia~~l~~-~G~~vv~~~~r~~--~~~~~~---------------~~~~~~--~~~~~~~~~~Dv~   64 (258)
T 3oid_A            5 KCALVTGSSRGVGKAAAIRLAE-NGYNIVINYARSK--KAALET---------------AEEIEK--LGVKVLVVKANVG   64 (258)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH---------------HHHHHT--TTCCEEEEECCTT
T ss_pred             CEEEEecCCchHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHH---------------HHHHHh--cCCcEEEEEcCCC
Confidence            4689999999999999999884 6888886555431  111111               111111  001222 335889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++|+-..|
T Consensus        65 ~~~~v~~~~~~~~~~~g~id~lv~nAg   91 (258)
T 3oid_A           65 QPAKIKEMFQQIDETFGRLDVFVNNAA   91 (258)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            999888888776654  6788887665

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=91.07  E-value=0.34  Score=46.31  Aligned_cols=119  Identities=16%  Similarity=0.134  Sum_probs=57.2

Q ss_pred             EeecCCCCC-c----eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhc
Q 022057           26 SCSTNPPQS-N----IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGS  100 (303)
Q Consensus        26 ~~~~~~~~~-~----ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~  100 (303)
                      .|.+.|.+| |    .||+|+|. |..|+.+++++. .-+++++. +|+.. ...+..++.   ..-+.-+.|.+.+.+-
T Consensus        21 ~~~~~~~~~~~~~~~~~IlIlG~-G~lg~~~~~aa~-~lG~~v~v-~d~~~-~~p~~~~ad---~~~~~~~~d~~~l~~~   93 (419)
T 4e4t_A           21 SMTATPDSVSPILPGAWLGMVGG-GQLGRMFCFAAQ-SMGYRVAV-LDPDP-ASPAGAVAD---RHLRAAYDDEAALAEL   93 (419)
T ss_dssp             --------CCCCCTTCEEEEECC-SHHHHHHHHHHH-HTTCEEEE-ECSCT-TCHHHHHSS---EEECCCTTCHHHHHHH
T ss_pred             hhccCccccccCCCCCEEEEECC-CHHHHHHHHHHH-HCCCEEEE-ECCCC-cCchhhhCC---EEEECCcCCHHHHHHH
Confidence            345555553 2    38999997 999999999876 46888764 57532 112222221   1111124555554432


Q ss_pred             cccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCCC--CC-HHHHHHHHHHhhhcCCeE
Q 022057          101 ISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVPH--IQ-LETVSALSAFCDKASMGC  159 (303)
Q Consensus       101 ~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTTG--~~-~e~~~~L~~~a~~~~i~v  159 (303)
                      .   .++|+|+ +. .+.. .+.+..+.+.   .++|.+-  +. ..+....+++.++.|+|+
T Consensus        94 a---~~~D~V~-~~-~e~~~~~~~~~l~~~---~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~  148 (419)
T 4e4t_A           94 A---GLCEAVS-TE-FENVPAASLDFLART---TFVAPAGRCVAVAQDRIAEKRFIEASGVPV  148 (419)
T ss_dssp             H---HHCSEEE-EC-CTTCCHHHHHHHHTT---SEESSCHHHHHHHTCHHHHHHHHHHTTCCB
T ss_pred             H---hcCCEEE-Ec-cCcCCHHHHHHHHcc---CCcCCCHHHHHHhcCHHHHHHHHHHcCcCC
Confidence            1   3688877 32 2222 3444444444   2444331  10 012234556667777763

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=91.05  E-value=3.1  Score=36.17  Aligned_cols=83  Identities=14%  Similarity=0.165  Sum_probs=52.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++              .+++-..   ..++. +..|.+
T Consensus        10 k~vlVTGas~giG~~ia~~l~~-~G~~V~~-~~r~~--~~~~~~--------------~~~~~~~---~~~~~~~~~D~~   68 (260)
T 2ae2_A           10 CTALVTGGSRGIGYGIVEELAS-LGASVYT-CSRNQ--KELNDC--------------LTQWRSK---GFKVEASVCDLS   68 (260)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHH--------------HHHHHHT---TCEEEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHH--------------HHHHHhc---CCcEEEEEcCCC
Confidence            5799999999999999999885 5788765 44431  111111              0111110   01122 235888


Q ss_pred             CchhHHHHHHHHHHc---CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF---GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~---g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.   ++++|+-..|
T Consensus        69 ~~~~~~~~~~~~~~~~~g~id~lv~~Ag   96 (260)
T 2ae2_A           69 SRSERQELMNTVANHFHGKLNILVNNAG   96 (260)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCCEEEECCC
Confidence            888888877766653   5888887766

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=91.03  E-value=0.4  Score=46.76  Aligned_cols=137  Identities=8%  Similarity=0.101  Sum_probs=85.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcC---C-------CC-----CCeeecCCHH
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDM---E-------QP-----LEIPVMSDLT   95 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~---~-------~~-----~gv~v~~dl~   95 (303)
                      .+|+|-|. |++|+..++.+.+ .+.++|++.|+     +..|-|..++..+   .       ..     .+.... +.+
T Consensus       240 ~~VaVQG~-GnVG~~aa~~L~e-~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v-~~~  316 (456)
T 3r3j_A          240 KKCLVSGS-GNVAQYLVEKLIE-KGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYF-ENQ  316 (456)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHH-HTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEE-CSC
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEe-CCc
Confidence            68999997 9999999998764 58899998884     2335554433200   0       00     122222 224


Q ss_pred             HHHhccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCCeEEEcCCCcH--HHH
Q 022057           96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI--GSI  170 (303)
Q Consensus        96 ~~l~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G-~~~e~~~~L~~~a~~~~i~vv~a~N~Si--Gv~  170 (303)
                      +++.     .++||++=+...... .+++....+++..+|+|-- + .+++..   +.+ +++  .+++.|-+..  |.+
T Consensus       317 ~i~~-----~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA~---~iL-~~r--GI~~~PD~~aNAGGV  385 (456)
T 3r3j_A          317 KPWN-----IPCDIAFPCATQNEINENDADLFIQNKCKMIVEGANMPTHIKAL---HKL-KQN--NIILCPSKAANAGGV  385 (456)
T ss_dssp             CGGG-----SCCSEEEECSCTTCBCHHHHHHHHHHTCCEEECCSSSCBCTTHH---HHH-HTT--TCEEECHHHHTTHHH
T ss_pred             cccc-----cCccEEEeCCCccchhhHHHHHHHhcCCeEEEecCCCCCCHHHH---HHH-HHC--CCEEeChHHhcCCce
Confidence            5554     589999988766554 7788888888999999865 2 444432   222 333  4577787654  333


Q ss_pred             HH--HHHHHHhccCCCcE
Q 022057          171 LL--QQAAISASFHYKNV  186 (303)
Q Consensus       171 ll--~~~a~~~~~~~~di  186 (303)
                      ..  .+..+....++|+-
T Consensus       386 ~vS~~E~~qn~~~~~w~~  403 (456)
T 3r3j_A          386 AVSGLEMSQNSMRLQWTH  403 (456)
T ss_dssp             HHHHHHHHHHHHTCCCCH
T ss_pred             eeehHHHhhcccccCCCH
Confidence            22  34455555566653

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=91.02  E-value=1  Score=38.89  Aligned_cols=85  Identities=13%  Similarity=0.057  Sum_probs=50.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf  113 (303)
                      +.+|.|.|++|.+|+.+++.+.+..+.+++.. +++.  ....+..              +++-..   ..++. +..|.
T Consensus         4 ~k~vlITGasggIG~~~a~~L~~~~g~~V~~~-~r~~--~~~~~~~--------------~~l~~~---~~~~~~~~~Dl   63 (276)
T 1wma_A            4 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLT-ARDV--TRGQAAV--------------QQLQAE---GLSPRFHQLDI   63 (276)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEE-ESSH--HHHHHHH--------------HHHHHT---TCCCEEEECCT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEE-eCCh--HHHHHHH--------------HHHHhc---CCeeEEEECCC
Confidence            45799999999999999999986467887764 3321  1111110              111100   01222 34577


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      +.++.+.+.+..+.+.  ++++|+=..|
T Consensus        64 ~~~~~~~~~~~~~~~~~g~id~li~~Ag   91 (276)
T 1wma_A           64 DDLQSIRALRDFLRKEYGGLDVLVNNAG   91 (276)
T ss_dssp             TCHHHHHHHHHHHHHHHSSEEEEEECCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            7777776666655443  6777775554

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=90.98  E-value=1.5  Score=38.75  Aligned_cols=85  Identities=20%  Similarity=0.208  Sum_probs=52.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      ..+.|.|++|.+|+.+++.+.+ .+..++....++.  ....++               .+.+..  ...++. +..|.+
T Consensus        29 k~vlVTGas~gIG~aia~~la~-~G~~V~~~~~~~~--~~~~~~---------------~~~~~~--~~~~~~~~~~D~~   88 (269)
T 4dmm_A           29 RIALVTGASRGIGRAIALELAA-AGAKVAVNYASSA--GAADEV---------------VAAIAA--AGGEAFAVKADVS   88 (269)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH---------------HHHHHH--TTCCEEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCCh--HHHHHH---------------HHHHHh--cCCcEEEEECCCC
Confidence            3688999999999999999885 5788765432221  111111               111111  001222 345889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++|+-..|.
T Consensus        89 d~~~v~~~~~~~~~~~g~id~lv~nAg~  116 (269)
T 4dmm_A           89 QESEVEALFAAVIERWGRLDVLVNNAGI  116 (269)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            998888888776665  78999877654

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=90.97  E-value=2  Score=37.99  Aligned_cols=87  Identities=15%  Similarity=0.162  Sum_probs=52.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+..              +++-+.-.....+. +..|.+
T Consensus        12 k~vlVTGas~gIG~aia~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~l~~~~~~~~~~~~~~~Dv~   73 (281)
T 3svt_A           12 RTYLVTGGGSGIGKGVAAGLVA-AGASVMI-VGRNP--DKLAGAV--------------QELEALGANGGAIRYEPTDIT   73 (281)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHTTCCSSCEEEEEECCTT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH--------------HHHHHhCCCCceEEEEeCCCC
Confidence            4699999999999999999885 5788664 45431  1111111              11110000000122 235888


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++|+-..|.
T Consensus        74 ~~~~v~~~~~~~~~~~g~id~lv~nAg~  101 (281)
T 3svt_A           74 NEDETARAVDAVTAWHGRLHGVVHCAGG  101 (281)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            898888888776654  68888876653

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=90.97  E-value=0.75  Score=39.23  Aligned_cols=81  Identities=14%  Similarity=0.166  Sum_probs=51.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCC--cEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARG--MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~--~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvID  112 (303)
                      .+|.|.|++|.+|+.+++.+.+. +  .+++.. +++.  ....++.               +. .    ..+.. +..|
T Consensus         4 k~vlItGasggiG~~la~~l~~~-g~~~~V~~~-~r~~--~~~~~l~---------------~~-~----~~~~~~~~~D   59 (250)
T 1yo6_A            4 GSVVVTGANRGIGLGLVQQLVKD-KNIRHIIAT-ARDV--EKATELK---------------SI-K----DSRVHVLPLT   59 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHTC-TTCCEEEEE-ESSG--GGCHHHH---------------TC-C----CTTEEEEECC
T ss_pred             CEEEEecCCchHHHHHHHHHHhc-CCCcEEEEE-ecCH--HHHHHHH---------------hc-c----CCceEEEEee
Confidence            57999999999999999998854 5  777764 4431  1111111               00 0    01222 3457


Q ss_pred             cCCchhHHHHHHHHHHc----CCCeEEeCCCC
Q 022057          113 FTDASTVYDNVKQATAF----GMRSVVYVPHI  140 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~----g~~vVigTTG~  140 (303)
                      .+.++.+.+.+..+.+.    ++++|+-..|.
T Consensus        60 ~~~~~~~~~~~~~~~~~~g~~~id~li~~Ag~   91 (250)
T 1yo6_A           60 VTCDKSLDTFVSKVGEIVGSDGLSLLINNAGV   91 (250)
T ss_dssp             TTCHHHHHHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCCcEEEECCcc
Confidence            88888877777665543    78888876653

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=90.93  E-value=1.8  Score=38.24  Aligned_cols=82  Identities=17%  Similarity=0.187  Sum_probs=53.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---EEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++               .+.+..    ...+   +..|
T Consensus         5 k~~lVTGas~GIG~aia~~la~-~G~~V~~-~~r~~--~~~~~~---------------~~~l~~----~~~~~~~~~~D   61 (264)
T 3tfo_A            5 KVILITGASGGIGEGIARELGV-AGAKILL-GARRQ--ARIEAI---------------ATEIRD----AGGTALAQVLD   61 (264)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHH-TTCEEEE-EESSH--HHHHHH---------------HHHHHH----TTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH---------------HHHHHh----cCCcEEEEEcC
Confidence            4689999999999999999884 5788765 44431  111111               111110    1222   2358


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .|.++.+.+.+..+.+.  ++++|+-..|.
T Consensus        62 v~d~~~v~~~~~~~~~~~g~iD~lVnnAG~   91 (264)
T 3tfo_A           62 VTDRHSVAAFAQAAVDTWGRIDVLVNNAGV   91 (264)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            89999888888777665  78999877663

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=90.92  E-value=1  Score=38.92  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=28.1

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      .|.++.|.|++|.+|+.+++.+.+..+..++. .++
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~-~~~   37 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVIN-IDI   37 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEE-EES
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEE-ecc
Confidence            35679999999999999999998767776654 454

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=90.92  E-value=0.84  Score=40.47  Aligned_cols=83  Identities=20%  Similarity=0.282  Sum_probs=52.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT  114 (303)
                      ..+.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++.               +.+..  ...++ -+..|.+
T Consensus        29 k~~lVTGas~GIG~aia~~la~-~G~~V~~-~~r~~--~~~~~~~---------------~~~~~--~~~~~~~~~~Dv~   87 (270)
T 3ftp_A           29 QVAIVTGASRGIGRAIALELAR-RGAMVIG-TATTE--AGAEGIG---------------AAFKQ--AGLEGRGAVLNVN   87 (270)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEE-EESSH--HHHHHHH---------------HHHHH--HTCCCEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH---------------HHHHh--cCCcEEEEEEeCC
Confidence            4688899999999999999885 5787765 44431  1111111               11110  00122 2456889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++|+-..|
T Consensus        88 d~~~v~~~~~~~~~~~g~iD~lvnnAg  114 (270)
T 3ftp_A           88 DATAVDALVESTLKEFGALNVLVNNAG  114 (270)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            998888888776654  6899987765

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=90.90  E-value=0.29  Score=44.76  Aligned_cols=31  Identities=13%  Similarity=0.115  Sum_probs=25.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      -+|.|+|++|.+|...++.+. ..+.++++..
T Consensus       150 ~~vlV~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~  180 (334)
T 3qwb_A          150 DYVLLFAAAGGVGLILNQLLK-MKGAHTIAVA  180 (334)
T ss_dssp             CEEEESSTTBHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEe
Confidence            479999988999999999766 4688877654

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=90.88  E-value=1.4  Score=38.36  Aligned_cols=82  Identities=21%  Similarity=0.355  Sum_probs=53.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++               .+.+..    ...-+..|.+.
T Consensus        10 k~~lVTGas~gIG~a~a~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~~~~----~~~~~~~Dv~d   66 (248)
T 3op4_A           10 KVALVTGASRGIGKAIAELLAE-RGAKVIG-TATSE--SGAQAI---------------SDYLGD----NGKGMALNVTN   66 (248)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHH-TTCEEEE-EESSH--HHHHHH---------------HHHHGG----GEEEEECCTTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHH---------------HHHhcc----cceEEEEeCCC
Confidence            4789999999999999998884 5888765 44431  111111               111210    11124568899


Q ss_pred             chhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          116 ASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       116 p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      ++...+.+..+.+.  ++++++-..|.
T Consensus        67 ~~~v~~~~~~~~~~~g~iD~lv~nAg~   93 (248)
T 3op4_A           67 PESIEAVLKAITDEFGGVDILVNNAGI   93 (248)
T ss_dssp             HHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            98888888777664  78888877663

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=90.87  E-value=1.6  Score=38.73  Aligned_cols=86  Identities=20%  Similarity=0.205  Sum_probs=52.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. +++.. .....++               .+.+... ....+. +..|.+
T Consensus        26 k~~lVTGas~GIG~~ia~~la~-~G~~V~~-~~r~~-~~~~~~~---------------~~~~~~~-~~~~~~~~~~Dv~   86 (281)
T 3v2h_A           26 KTAVITGSTSGIGLAIARTLAK-AGANIVL-NGFGA-PDEIRTV---------------TDEVAGL-SSGTVLHHPADMT   86 (281)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHH-TTCEEEE-ECCCC-HHHHHHH---------------HHHHHTT-CSSCEEEECCCTT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEE-EeCCC-hHHHHHH---------------HHHHhhc-cCCcEEEEeCCCC
Confidence            5789999999999999999885 5777764 44321 0111111               1111100 001222 235888


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++|+-..|.
T Consensus        87 d~~~v~~~~~~~~~~~g~iD~lv~nAg~  114 (281)
T 3v2h_A           87 KPSEIADMMAMVADRFGGADILVNNAGV  114 (281)
T ss_dssp             CHHHHHHHHHHHHHHTSSCSEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEECCCC
Confidence            888888888777665  68888876654

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=90.86  E-value=0.71  Score=46.53  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=27.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      +++|.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus        11 ~~~ilVTGatG~IG~~l~~~L~~-~G~~V~~~~   42 (699)
T 1z45_A           11 SKIVLVTGGAGYIGSHTVVELIE-NGYDCVVAD   42 (699)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CcCEEEEEE
Confidence            47899999999999999999886 478888754

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=90.86  E-value=2.7  Score=36.97  Aligned_cols=94  Identities=18%  Similarity=0.311  Sum_probs=54.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---EEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.....    .    .+......++++..+.+ ......   +..|
T Consensus        11 k~~lVTGas~gIG~a~a~~l~~-~G~~V~~-~~r~~~~~~----~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~D   79 (281)
T 3s55_A           11 KTALITGGARGMGRSHAVALAE-AGADIAI-CDRCENSDV----V----GYPLATADDLAETVALV-EKTGRRCISAKVD   79 (281)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EECCSCCTT----C----SSCCCCHHHHHHHHHHH-HHTTCCEEEEECC
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCeEEE-EeCCccccc----c----ccccccHHHHHHHHHHH-HhcCCeEEEEeCC
Confidence            5799999999999999999885 5788665 454310000    0    00000001111111100 001222   3458


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .|.++.+.+.+..+.+.  ++++++-..|.
T Consensus        80 v~~~~~v~~~~~~~~~~~g~id~lv~nAg~  109 (281)
T 3s55_A           80 VKDRAALESFVAEAEDTLGGIDIAITNAGI  109 (281)
T ss_dssp             TTCHHHHHHHHHHHHHHHTCCCEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            89999888888777665  78999877653

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=90.77  E-value=2.3  Score=37.53  Aligned_cols=84  Identities=14%  Similarity=0.121  Sum_probs=53.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+..           ..+.+...     .++. +..|.+
T Consensus        28 k~~lVTGas~GIG~aia~~l~~-~G~~V~~-~~r~~--~~~~~~~-----------~~~~~~~~-----~~~~~~~~Dv~   87 (277)
T 4fc7_A           28 KVAFITGGGSGIGFRIAEIFMR-HGCHTVI-ASRSL--PRVLTAA-----------RKLAGATG-----RRCLPLSMDVR   87 (277)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEE-EESCH--HHHHHHH-----------HHHHHHHS-----SCEEEEECCTT
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH-----------HHHHHhcC-----CcEEEEEcCCC
Confidence            5789999999999999999884 5787775 44431  1111110           00111111     1222 345889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++|+-..|
T Consensus        88 ~~~~v~~~~~~~~~~~g~id~lv~nAg  114 (277)
T 4fc7_A           88 APPAVMAAVDQALKEFGRIDILINCAA  114 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            999888888777665  7899987765

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=90.76  E-value=1.2  Score=39.49  Aligned_cols=82  Identities=11%  Similarity=0.109  Sum_probs=50.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+.               .+.+..   ..++. +..|.+
T Consensus        30 k~vlVTGas~gIG~aia~~L~~-~G~~V~~-~~r~~--~~~~~~---------------~~~l~~---~~~~~~~~~Dv~   87 (276)
T 2b4q_A           30 RIALVTGGSRGIGQMIAQGLLE-AGARVFI-CARDA--EACADT---------------ATRLSA---YGDCQAIPADLS   87 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHH---------------HHHHTT---SSCEEECCCCTT
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHH---------------HHHHHh---cCceEEEEeeCC
Confidence            4799999999999999999885 5788665 44431  111111               111110   01111 124778


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++|+-..|
T Consensus        88 d~~~v~~~~~~~~~~~g~iD~lvnnAg  114 (276)
T 2b4q_A           88 SEAGARRLAQALGELSARLDILVNNAG  114 (276)
T ss_dssp             SHHHHHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            888877777766553  6888887665

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=90.76  E-value=2.7  Score=36.36  Aligned_cols=83  Identities=22%  Similarity=0.223  Sum_probs=51.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++               .+.+..  ...++. +..|.+
T Consensus         8 k~~lVTGas~gIG~aia~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~l~~--~~~~~~~~~~Dv~   66 (247)
T 2jah_A            8 KVALITGASSGIGEATARALAA-EGAAVAI-AARRV--EKLRAL---------------GDELTA--AGAKVHVLELDVA   66 (247)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHH---------------HHHHHH--TTCCEEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH---------------HHHHHh--cCCcEEEEECCCC
Confidence            5799999999999999999885 5788765 44431  111111               111110  001222 245888


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++|+-..|
T Consensus        67 ~~~~~~~~~~~~~~~~g~id~lv~nAg   93 (247)
T 2jah_A           67 DRQGVDAAVASTVEALGGLDILVNNAG   93 (247)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888888777766553  6888887655

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=90.75  E-value=1.6  Score=38.29  Aligned_cols=85  Identities=14%  Similarity=0.164  Sum_probs=53.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      ..+.|.|++|.+|+.+++.+.+ .+..++....++.  ....+.              .++....   ..++. +..|.+
T Consensus        26 k~vlITGas~gIG~~~a~~l~~-~G~~v~~~~~~~~--~~~~~~--------------~~~~~~~---~~~~~~~~~Dl~   85 (269)
T 3gk3_A           26 RVAFVTGGMGGLGAAISRRLHD-AGMAVAVSHSERN--DHVSTW--------------LMHERDA---GRDFKAYAVDVA   85 (269)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHT-TTCEEEEEECSCH--HHHHHH--------------HHHHHTT---TCCCEEEECCTT
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCch--HHHHHH--------------HHHHHhc---CCceEEEEecCC
Confidence            4578889999999999999884 6888765432221  111110              0111100   01233 345889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++|+-..|.
T Consensus        86 ~~~~v~~~~~~~~~~~g~id~li~nAg~  113 (269)
T 3gk3_A           86 DFESCERCAEKVLADFGKVDVLINNAGI  113 (269)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            999888888777665  78999877663

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=90.73  E-value=3.1  Score=37.89  Aligned_cols=86  Identities=22%  Similarity=0.207  Sum_probs=53.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC----CCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~----~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ..+.|.|++|.+|+.+++.+.+ .+.+++. .|...    .+++.....           .-.+++-.     ....++.
T Consensus        10 k~~lVTGas~GIG~~~a~~La~-~Ga~Vv~-~~~~~~~~~~~R~~~~~~-----------~~~~~l~~-----~~~~~~~   71 (319)
T 1gz6_A           10 RVVLVTGAGGGLGRAYALAFAE-RGALVVV-NDLGGDFKGVGKGSSAAD-----------KVVEEIRR-----RGGKAVA   71 (319)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEE-ECCCBCTTSCBCCSHHHH-----------HHHHHHHH-----TTCEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEE-EcCCcccccccCCHHHHH-----------HHHHHHHh-----hCCeEEE
Confidence            5789999999999999999885 5787765 33210    011111000           00112211     2345678


Q ss_pred             EcCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          112 DFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      |.+.++.....+..+.+.  ++++|+-..|
T Consensus        72 D~~~~~~~~~~~~~~~~~~g~iD~lVnnAG  101 (319)
T 1gz6_A           72 NYDSVEAGEKLVKTALDTFGRIDVVVNNAG  101 (319)
T ss_dssp             ECCCGGGHHHHHHHHHHHTSCCCEEEECCC
T ss_pred             eCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            999998887777666554  5888887655

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=90.71  E-value=1.6  Score=39.98  Aligned_cols=88  Identities=16%  Similarity=0.188  Sum_probs=54.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      ..|.|.|++|.+|+.+++.+.+ .+.++++... +..+.+...+.            .+.+.+..  ...+.. +..|.|
T Consensus         6 k~vlVTGas~GIG~aia~~L~~-~G~~V~~~~r-~~~~r~~~~~~------------~l~~~~~~--~~~~~~~~~~Dvt   69 (324)
T 3u9l_A            6 KIILITGASSGFGRLTAEALAG-AGHRVYASMR-DIVGRNASNVE------------AIAGFARD--NDVDLRTLELDVQ   69 (324)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHH-TTCEEEEEES-CTTTTTHHHHH------------HHHHHHHH--HTCCEEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEecC-cccccCHHHHH------------HHHHHHHh--cCCcEEEEEeecC
Confidence            4688999999999999999885 6888877543 22122221110            11111110  001222 345889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++|+=..|
T Consensus        70 d~~~v~~~~~~~~~~~g~iD~lVnnAG   96 (324)
T 3u9l_A           70 SQVSVDRAIDQIIGEDGRIDVLIHNAG   96 (324)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            998888888777654  7899987766

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=90.71  E-value=1.8  Score=38.09  Aligned_cols=85  Identities=15%  Similarity=0.206  Sum_probs=53.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++....++.  ....++               .+.+..  ...++. +..|.+
T Consensus        19 k~~lVTGas~gIG~aia~~l~~-~G~~V~~~~~~~~--~~~~~~---------------~~~~~~--~~~~~~~~~~Dv~   78 (270)
T 3is3_A           19 KVALVTGSGRGIGAAVAVHLGR-LGAKVVVNYANST--KDAEKV---------------VSEIKA--LGSDAIAIKADIR   78 (270)
T ss_dssp             CEEEESCTTSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH---------------HHHHHH--TTCCEEEEECCTT
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHH---------------HHHHHh--cCCcEEEEEcCCC
Confidence            5689999999999999999884 5888876443321  111111               111111  001222 345889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++++-..|.
T Consensus        79 ~~~~v~~~~~~~~~~~g~id~lvnnAg~  106 (270)
T 3is3_A           79 QVPEIVKLFDQAVAHFGHLDIAVSNSGV  106 (270)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEECCCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            999888888877665  68888876653

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=90.70  E-value=4  Score=34.67  Aligned_cols=33  Identities=15%  Similarity=0.134  Sum_probs=25.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      |.+|.|.|++|.+|+.+++.+.+ .+.+++. +++
T Consensus         1 Mk~vlVTGas~gIG~~~a~~l~~-~G~~V~~-~~r   33 (230)
T 3guy_A            1 MSLIVITGASSGLGAELAKLYDA-EGKATYL-TGR   33 (230)
T ss_dssp             --CEEEESTTSHHHHHHHHHHHH-TTCCEEE-EES
T ss_pred             CCEEEEecCCchHHHHHHHHHHH-CCCEEEE-EeC
Confidence            34699999999999999999885 5777654 444

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=90.68  E-value=0.64  Score=41.48  Aligned_cols=81  Identities=21%  Similarity=0.267  Sum_probs=52.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++               .+.+.     .++. +..|.+
T Consensus        30 k~vlVTGas~gIG~aia~~la~-~G~~V~~-~~r~~--~~~~~~---------------~~~~~-----~~~~~~~~Dv~   85 (277)
T 3gvc_A           30 KVAIVTGAGAGIGLAVARRLAD-EGCHVLC-ADIDG--DAADAA---------------ATKIG-----CGAAACRVDVS   85 (277)
T ss_dssp             CEEEETTTTSTHHHHHHHHHHH-TTCEEEE-EESSH--HHHHHH---------------HHHHC-----SSCEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHH---------------HHHcC-----CcceEEEecCC
Confidence            4689999999999999999885 5788765 44431  111111               11111     1222 345888


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++|+-..|.
T Consensus        86 d~~~v~~~~~~~~~~~g~iD~lvnnAg~  113 (277)
T 3gvc_A           86 DEQQIIAMVDACVAAFGGVDKLVANAGV  113 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            898888887776654  68888876653

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=90.67  E-value=1.7  Score=37.65  Aligned_cols=73  Identities=21%  Similarity=0.199  Sum_probs=46.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.. +++.  ....                  ++         ..+..|.+.
T Consensus        16 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~-~r~~--~~~~------------------~~---------~~~~~D~~~   64 (247)
T 1uzm_A           16 RSVLVTGGNRGIGLAIAQRLAA-DGHKVAVT-HRGS--GAPK------------------GL---------FGVEVDVTD   64 (247)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEE-ESSS--CCCT------------------TS---------EEEECCTTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEE-eCCh--HHHH------------------Hh---------cCeeccCCC
Confidence            5799999999999999999885 57887654 4431  0000                  00         014456777


Q ss_pred             chhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       116 p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      ++.+.+.+..+.+.  ++++|+-..|
T Consensus        65 ~~~~~~~~~~~~~~~g~id~lv~~Ag   90 (247)
T 1uzm_A           65 SDAVDRAFTAVEEHQGPVEVLVSNAG   90 (247)
T ss_dssp             HHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            77776666655442  5677776555

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=90.64  E-value=0.63  Score=40.31  Aligned_cols=81  Identities=22%  Similarity=0.302  Sum_probs=52.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++               .+.+.     ..+. +..|.+
T Consensus         4 k~vlVTGas~GIG~a~a~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~~~-----~~~~~~~~D~~   59 (235)
T 3l6e_A            4 GHIIVTGAGSGLGRALTIGLVE-RGHQVSM-MGRRY--QRLQQQ---------------ELLLG-----NAVIGIVADLA   59 (235)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHH---------------HHHHG-----GGEEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH---------------HHHhc-----CCceEEECCCC
Confidence            5699999999999999999885 5788765 45431  111111               11111     1222 345888


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      .++.+.+.+..+.+.  ++++|+-..|.
T Consensus        60 ~~~~v~~~~~~~~~~~g~id~lvnnAg~   87 (235)
T 3l6e_A           60 HHEDVDVAFAAAVEWGGLPELVLHCAGT   87 (235)
T ss_dssp             SHHHHHHHHHHHHHHHCSCSEEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEECCCC
Confidence            888888877766654  68888876664

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=90.61  E-value=0.58  Score=43.14  Aligned_cols=33  Identities=24%  Similarity=0.238  Sum_probs=26.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      |.||+|+|. |..|+.++.++. .-|++++.+ |++
T Consensus         1 MK~I~ilGg-g~~g~~~~~~Ak-~~G~~vv~v-d~~   33 (363)
T 4ffl_A            1 MKTICLVGG-KLQGFEAAYLSK-KAGMKVVLV-DKN   33 (363)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-HTTCEEEEE-ESC
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HCCCEEEEE-eCC
Confidence            579999997 999999998665 579998865 653

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=90.60  E-value=3.6  Score=36.03  Aligned_cols=85  Identities=15%  Similarity=0.198  Sum_probs=50.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  .+..++               .+.+...-....+. +..|.+
T Consensus        33 k~vlVTGasggIG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~~~~~~~~~~~~~~~~Dl~   93 (279)
T 1xg5_A           33 RLALVTGASGGIGAAVARALVQ-QGLKVVG-CARTV--GNIEEL---------------AAECKSAGYPGTLIPYRCDLS   93 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHH---------------HHHHHHTTCSSEEEEEECCTT
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEE-EECCh--HHHHHH---------------HHHHHhcCCCceEEEEEecCC
Confidence            5799999999999999999885 5788765 44431  111111               11111000000122 235888


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++|+-..|
T Consensus        94 ~~~~v~~~~~~~~~~~g~iD~vi~~Ag  120 (279)
T 1xg5_A           94 NEEDILSMFSAIRSQHSGVDICINNAG  120 (279)
T ss_dssp             CHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            888887777655443  6888887765

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=90.55  E-value=2.1  Score=38.10  Aligned_cols=89  Identities=20%  Similarity=0.223  Sum_probs=53.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhcccc-CCCcc-EEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQ-SKARA-VVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~-~~~~D-VvIDf  113 (303)
                      ..+.|.|++|.+|+.+++.+.+ .+.+++. ++++.  .+..++           ...++++.+++.. ..++. +..|.
T Consensus        10 k~vlVTGas~GIG~aia~~l~~-~G~~V~~-~~r~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~Dv   74 (285)
T 3sc4_A           10 KTMFISGGSRGIGLAIAKRVAA-DGANVAL-VAKSA--EPHPKL-----------PGTIYTAAKEIEEAGGQALPIVGDI   74 (285)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHT-TTCEEEE-EESCC--SCCSSS-----------CCCHHHHHHHHHHHTSEEEEEECCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EECCh--hhhhhh-----------hHHHHHHHHHHHhcCCcEEEEECCC
Confidence            4689999999999999999885 5788765 44432  110000           0111221110000 01222 23488


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      |.++.+.+.+..+.+.  ++++++-..|
T Consensus        75 ~~~~~v~~~~~~~~~~~g~id~lvnnAg  102 (285)
T 3sc4_A           75 RDGDAVAAAVAKTVEQFGGIDICVNNAS  102 (285)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            9999888888877665  7899987765

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=90.55  E-value=0.23  Score=45.34  Aligned_cols=112  Identities=8%  Similarity=0.022  Sum_probs=58.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcC-CCCC-CeeecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDM-EQPL-EIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~~~~~g~-~~~~-gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ..+|+|+|+ |.||+.++..+.+ .++ +++ +++++.  ..+.+++.. +... .+..++++.+.+      .++|+||
T Consensus       141 ~~~vlVlGa-Gg~g~aia~~L~~-~G~~~V~-v~nR~~--~ka~~la~~~~~~~~~~~~~~~~~~~~------~~aDivI  209 (297)
T 2egg_A          141 GKRILVIGA-GGGARGIYFSLLS-TAAERID-MANRTV--EKAERLVREGDERRSAYFSLAEAETRL------AEYDIII  209 (297)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHT-TTCSEEE-EECSSH--HHHHHHHHHSCSSSCCEECHHHHHHTG------GGCSEEE
T ss_pred             CCEEEEECc-HHHHHHHHHHHHH-CCCCEEE-EEeCCH--HHHHHHHHHhhhccCceeeHHHHHhhh------ccCCEEE
Confidence            368999998 9999999998885 566 554 566542  222333310 0011 111123444444      4799999


Q ss_pred             EcCCchhHH-----HHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057          112 DFTDASTVY-----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus       112 DfT~p~a~~-----~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      .+|+.....     ..-...++.+. +|+-. .+++.+. .|.+.+++.|..++
T Consensus       210 n~t~~~~~~~~~~~~i~~~~l~~~~-~v~D~-~y~P~~T-~ll~~A~~~G~~~v  260 (297)
T 2egg_A          210 NTTSVGMHPRVEVQPLSLERLRPGV-IVSDI-IYNPLET-KWLKEAKARGARVQ  260 (297)
T ss_dssp             ECSCTTCSSCCSCCSSCCTTCCTTC-EEEEC-CCSSSSC-HHHHHHHHTTCEEE
T ss_pred             ECCCCCCCCCCCCCCCCHHHcCCCC-EEEEc-CCCCCCC-HHHHHHHHCcCEEE
Confidence            988543211     00012233343 33221 2233222 36677888787654

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=90.55  E-value=1  Score=39.18  Aligned_cols=85  Identities=13%  Similarity=0.112  Sum_probs=53.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC--cEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG--MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~--~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvI  111 (303)
                      +.+|.|.|++|.+|+.+++.+.+...  .+|+.. +++..  ....               ++++...   ..+.. +..
T Consensus        21 ~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~-~r~~~--~~~~---------------~~~l~~~---~~~~~~~~~   79 (267)
T 1sny_A           21 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTT-CRNRE--QAKE---------------LEDLAKN---HSNIHILEI   79 (267)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEE-ESCTT--SCHH---------------HHHHHHH---CTTEEEEEC
T ss_pred             CCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEE-ecChh--hhHH---------------HHHhhcc---CCceEEEEe
Confidence            45799999999999999999986432  777754 44320  0000               1222110   01232 345


Q ss_pred             EcCCchhHHHHHHHHHHc----CCCeEEeCCCC
Q 022057          112 DFTDASTVYDNVKQATAF----GMRSVVYVPHI  140 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~----g~~vVigTTG~  140 (303)
                      |.+.++.+.+.+..+.+.    ++++|+-..|.
T Consensus        80 Dl~~~~~v~~~~~~~~~~~g~~~id~li~~Ag~  112 (267)
T 1sny_A           80 DLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGI  112 (267)
T ss_dssp             CTTCGGGHHHHHHHHHHHHGGGCCSEEEECCCC
T ss_pred             cCCChHHHHHHHHHHHHhcCCCCccEEEECCCc
Confidence            888888887777665543    68999877663

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=90.53  E-value=0.37  Score=45.47  Aligned_cols=33  Identities=21%  Similarity=0.274  Sum_probs=26.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      ..+|+|+|+ |.+|+.+++.+.. -+++ |-++|+.
T Consensus       172 g~~V~ViGa-G~iG~~aa~~a~~-~Ga~-V~~~d~~  204 (384)
T 1l7d_A          172 PARVLVFGV-GVAGLQAIATAKR-LGAV-VMATDVR  204 (384)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCE-EEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCE-EEEEeCC
Confidence            468999998 9999999997764 5677 5567764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	303
d1yl7a2	109	d.81.1.3 (A:106-214) Dihydrodipicolinate reductase	2e-19
d1diha1	162	c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate re	1e-10
d1yl7a1	135	c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate re	9e-07
d1diha2	110	d.81.1.3 (A:131-240) Dihydrodipicolinate reductase	2e-05
d1vm6a3	128	c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate red	1e-04

>d1yl7a2 d.81.1.3 (A:106-214) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 109

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 79.6 bits (196), Expect = 2e-19
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 2/108 (1%)

Query: 166 SIGSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNLGQIYNREDIST 224
           +IG++L    A  A+  + + E++E   P+  D PS  A + A  ++   +       +T
Sbjct: 1   AIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDAT 60

Query: 225 DVKARGQVLG-EDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITD 271
                G      DG+ VH++ L GL +   V F   GE  +I+HD  D
Sbjct: 61  STSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLD 108

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 11/163 (6%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS 92
            +NI+V I GA   +GR  + A     G+++  A++            ++    +  V  
Sbjct: 2   DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV 61

Query: 93  DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 152
             ++     +      V IDFT      +++      G   V+           A+    
Sbjct: 62  QSSL----DAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAA 117

Query: 153 DKASMGCLIAPTLSIGS-----ILLQQAAISASFHYKNVEIVE 190
               +  + A   S+             +   S  +   ++++
Sbjct: 118 AD--IAIVFAANFSMTFANGAVRSALWLSGKESGLFDMRDVLD 158

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 135

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 45.1 bits (106), Expect = 9e-07
 Identities = 27/159 (16%), Positives = 52/159 (32%), Gaps = 32/159 (20%)

Query: 37  KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM 96
           +V + GA  ++G   V AV  A  + ++  +D+      +                    
Sbjct: 1   RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLL-------------------- 40

Query: 97  VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA- 155
                       VVIDFT    V  N++     G+ +VV       E    + ++     
Sbjct: 41  ------TDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKP 94

Query: 156 SMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVE 190
           +   LIAP  +       + +++ A         +E + 
Sbjct: 95  NTSVLIAPNFTSFVPGVLLAVRRIAERPGLTV-GLEPLL 132

>d1diha2 d.81.1.3 (A:131-240) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} Length = 110

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 171 LLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKAR 229
           LL++AA     +  ++EI+E    +  D PS  A  +   +++      ++      +  
Sbjct: 9   LLEKAAKVMGDYT-DIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGH 67

Query: 230 GQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITD 271
                   +   ++    +    T  F+  GE   I H  + 
Sbjct: 68  TGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASS 109

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} Length = 128

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 21/154 (13%), Positives = 46/154 (29%), Gaps = 31/154 (20%)

Query: 37  KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM 96
           K  I G    +G+  +  V   +G E+   +D                            
Sbjct: 2   KYGIVGYSGRMGQE-IQKVFSEKGHELVLKVD---------------------------- 32

Query: 97  VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS 156
            +  + +  +  VVIDF+    +   V     +    V+    ++ E +  L     +  
Sbjct: 33  -VNGVEELDSPDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKEVP 91

Query: 157 -MGCLIAPTLSIGSILLQQAAISASFHYKNVEIV 189
            +        +IG++   +  +       + E V
Sbjct: 92  VVQAYSRTVFAIGALKAAEFLVGKDPGMYSFEEV 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	303
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	100.0
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	100.0
d1yl7a2	109	Dihydrodipicolinate reductase {Mycobacterium tuber	100.0
d1diha2	110	Dihydrodipicolinate reductase {Escherichia coli [T	99.97
d1vm6a2	86	Dihydrodipicolinate reductase {Thermotoga maritima	99.97
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	99.96
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	99.67
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	99.67
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	99.63
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	99.63
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	99.62
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	99.58
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	99.57
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	99.51
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	99.49
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.06
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	99.05
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.04
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	99.01
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	98.87
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.83
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	98.68
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	98.59
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	98.47
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	98.44
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.38
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.33
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.32
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.31
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	98.3
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	98.23
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	98.22
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	98.2
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.2
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	98.2
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.18
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.18
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.14
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	98.13
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	98.09
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.93
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.85
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.82
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.75
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.75
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.74
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.64
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	97.63
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.62
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.61
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.58
d2g0ta1	338	Hypothetical protein TM0796 {Thermotoga maritima [	97.56
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.55
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.55
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.55
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.5
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.46
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.45
d1gr0a1	243	Myo-inositol 1-phosphate synthase {Mycobacterium t	97.43
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.3
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.24
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.21
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.2
d1vjpa1	275	Hypothetical protein TM1419 {Thermotoga maritima [	96.96
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.93
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.88
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.85
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.75
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.64
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.64
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.62
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.59
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	96.45
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.33
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.28
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.24
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.14
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.06
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.06
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.99
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.98
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.93
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	95.89
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	95.76
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	95.73
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.65
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	95.61
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.59
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.57
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.47
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.46
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.41
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.33
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.3
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.21
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.13
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.05
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.95
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.95
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.92
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	94.88
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.81
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.68
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	94.66
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.54
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.5
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.38
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	94.36
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	94.31
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.24
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	94.19
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.17
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.17
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.13
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	94.09
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	94.08
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.07
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	93.91
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	93.81
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	93.6
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.54
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	93.5
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.45
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.43
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	93.39
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	93.37
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.35
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	93.29
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.14
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.06
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.02
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	92.98
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	92.98
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.93
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	92.92
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.84
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	92.67
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	92.58
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	92.56
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	92.55
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	92.49
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.46
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.38
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	92.28
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	92.27
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	92.26
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	92.23
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.15
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	92.13
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.81
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	91.8
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	91.78
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	91.69
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	91.47
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	91.35
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.14
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	91.1
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	91.08
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	90.97
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	90.95
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	90.95
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	90.86
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	90.85
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.76
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	90.75
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	90.72
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	90.62
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	90.45
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	90.37
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	90.32
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	90.27
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.26
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	90.14
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	90.14
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	89.99
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	89.89
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	89.77
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	89.75
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	89.65
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	89.57
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	89.41
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	89.18
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	89.13
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	89.07
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	89.06
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	89.02
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	88.97
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	88.64
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	88.54
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.51
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	88.13
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	88.12
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	88.1
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	88.04
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	87.93
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	87.9
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	87.82
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	87.67
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	87.58
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.21
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	87.19
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	87.17
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	86.69
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	86.68
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	86.68
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	86.65
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	86.43
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	86.32
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	86.26
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	86.1
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	85.85
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	85.81
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	85.76
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	85.67
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	85.65
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	85.6
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	85.6
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	85.54
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	85.27
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	85.24
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	85.22
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	85.21
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	85.2
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	84.94
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	84.42
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	84.37
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	83.97
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	83.56
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	83.36
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	83.34
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	83.16
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	83.01
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	82.8
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	82.5
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	82.23
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	81.73
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	81.55
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	80.81
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	80.63
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	80.44
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	80.4
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	80.31
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	80.3
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	80.26
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	80.15

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-38  Score=272.37  Aligned_cols=152  Identities=20%  Similarity=0.256  Sum_probs=132.7

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (303)
                      +++|||+|+||+|||||++++.+.++++++|++++++.   ..|.|.+++.+.. +.++++++++++++      .++||
T Consensus         2 ~s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~-~~~~~~~~~~~~~~------~~~DV   74 (162)
T d1diha1           2 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGVTVQSSLDAVK------DDFDV   74 (162)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSS-CCSCCEESCSTTTT------TSCSE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccc-cCCceeeccHHHHh------cccce
Confidence            45799999999999999999999999999999999963   4688999988874 67899999998887      48999


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHH-HHHHHHHHhccC---CCc
Q 022057          110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI-LLQQAAISASFH---YKN  185 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~-ll~~~a~~~~~~---~~d  185 (303)
                      +||||+|+++.++++.|+++|+|+|+|||||+++|.+.|++++++  +|+++|||||+|++ ++.+++..++..   +||
T Consensus        75 iIDFs~p~~~~~~~~~a~~~~~~~ViGTTG~~~~~~~~i~~~a~~--ipi~~apN~SlGi~~~~~~~~~~~~~~~~~~fd  152 (162)
T d1diha1          75 FIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAAD--IAIVFAANFSMTFANGAVRSALWLSGKESGLFD  152 (162)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHTTT--SCEEECSCCCHHHHHHHHHHHHHHTTCCSSEEC
T ss_pred             EEEeccHHHHHHHHHHHHhccceeEEecCCCcHHHHHHHHHHcCC--CCEEEEccccHHHHHHHHHHHHHHHHhhccCCC
Confidence            999999999999999999999999999999999999999999988  99999999999984 433333333332   356


Q ss_pred             -EEEEEccC
Q 022057          186 -VEIVESRP  193 (303)
Q Consensus       186 -ieIiE~Hh  193 (303)
                       +||+|+||
T Consensus       153 ~~eI~E~HH  161 (162)
T d1diha1         153 MRDVLDLNN  161 (162)
T ss_dssp             HHHHTTGGG
T ss_pred             eeEEEecCC
Confidence             59999998

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=9.7e-37  Score=252.65  Aligned_cols=131  Identities=22%  Similarity=0.263  Sum_probs=115.4

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCCc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p  116 (303)
                      ||+|+||+||||+.+++.+.++++++|++.+|+.   .+                  +.....     .++||+||||+|
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~---~~------------------~~~~~~-----~~~DvvIDFS~p   54 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG---DP------------------LSLLTD-----GNTEVVIDFTHP   54 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT---CC------------------THHHHT-----TTCSEEEECCCT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC---Cc------------------hhhhcc-----ccCCEEEEcccH
Confidence            8999999999999999999999999999999863   11                  122222     579999999999


Q ss_pred             hhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHH-hhhcCCeEEEcCCCcHHHHHHHHHHHHhccC---CCcEEEEEcc
Q 022057          117 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF-CDKASMGCLIAPTLSIGSILLQQAAISASFH---YKNVEIVESR  192 (303)
Q Consensus       117 ~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~-a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~---~~dieIiE~H  192 (303)
                      +++.++++.|+++|+|+|+|||||+++|.+.|+++ ++++++|++++||||+|+|+|.++.+.+++.   +||+||+|.|
T Consensus        55 ~~~~~~~~~~~~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~apNfSlGvnll~~l~~~aa~~l~~~~diEiIe~h  134 (135)
T d1yl7a1          55 DVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFTSFVPGVLLAVRRIAERPGLTVGLEPLLDL  134 (135)
T ss_dssp             TTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECSCCGGGHHHHHHHHHHGGGSCEEEESSGGGSCC
T ss_pred             HHHHHHHHHHHhcCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcCCccHHHHHHHHHHHHHHHhccccCCeeehhhc
Confidence            99999999999999999999999999999999985 4456699999999999999998888877764   5899999999


Q ss_pred             C
Q 022057          193 P  193 (303)
Q Consensus       193 h  193 (303)
                      |
T Consensus       135 H  135 (135)
T d1yl7a1         135 H  135 (135)
T ss_dssp             C
T ss_pred             C
Confidence            8

>d1yl7a2 d.81.1.3 (A:106-214) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.8e-33  Score=223.64  Aligned_cols=102  Identities=29%  Similarity=0.431  Sum_probs=86.5

Q ss_pred             cHHHHHHHHHHHHhccCCCcEEEEEccC-CCCCCCcHHHHHHHHHHHhcCcc------cccCcccccccccCccccCCce
Q 022057          166 SIGSILLQQAAISASFHYKNVEIVESRP-NARDFPSPDATQIANNLSNLGQI------YNREDISTDVKARGQVLGEDGV  238 (303)
Q Consensus       166 SiGv~ll~~~a~~~~~~~~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~~~------~~r~~~~~~~~~rg~~~~~~~i  238 (303)
                      |+|+|||++|++.+++++.|+||+|+|| +|+|||||||++||+.|++....      +.+.+.   .+.++..  +++|
T Consensus         1 SlGvnll~~l~~~aa~~~~dieI~E~HH~~K~DaPSGTAl~la~~i~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~I   75 (109)
T d1yl7a2           1 AIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSL---PGARGAD--VDGI   75 (109)
T ss_dssp             CHHHHHHHHHHHHHGGGCSEEEEEEEECTTCCEESCHHHHHHHHHHHHHTTTSCCCCCCCCEEC---TTTTCEE--ETTE
T ss_pred             ChHHHHHHHHHHHHHhhCCCcEEEEcccccCCCCCchhHHHHHHHHHHhhcccccccceeEecc---ccccCCc--cCCc
Confidence            8999999999999999999999999999 69999999999999999874321      112221   1233322  3789


Q ss_pred             eEEEEEcCCCceeEEEEEccCCeEEEEEEecCCc
Q 022057          239 RVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDV  272 (303)
Q Consensus       239 ~ihS~R~g~ivg~H~V~f~~~~E~iel~H~a~sR  272 (303)
                      +|||+|+|+++|+|+|+|.+++|+|+|+|+|.||
T Consensus        76 ~i~S~R~g~v~g~H~V~F~~~~E~i~l~H~a~~R  109 (109)
T d1yl7a2          76 PVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDR  109 (109)
T ss_dssp             EEEEEECTTCCEEEEEEEEETTEEEEEEEEECSG
T ss_pred             eEEEEecCCCcEEEEEEEcCCCcEEEEEEEecCC
Confidence            9999999999999999999999999999999998

>d1diha2 d.81.1.3 (A:131-240) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1e-31  Score=214.83  Aligned_cols=99  Identities=20%  Similarity=0.309  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHhccC---CCcEEEEEccC-CCCCCCcHHHHHHHHHHHhcCc-------ccccCcccccccccCccccC
Q 022057          167 IGSILLQQAAISASFH---YKNVEIVESRP-NARDFPSPDATQIANNLSNLGQ-------IYNREDISTDVKARGQVLGE  235 (303)
Q Consensus       167 iGv~ll~~~a~~~~~~---~~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~~-------~~~r~~~~~~~~~rg~~~~~  235 (303)
                      +|||||+++++.++++   +||+||+|+|| +|+|||||||++|++.|++...       .+.+.+...   .|    .+
T Consensus         1 IGvnll~~l~~~~a~~l~~~~dieI~E~HH~~K~DaPSGTAl~lae~i~~~~~~~~~~~~~~~~~~~~~---~~----~~   73 (110)
T d1diha2           1 VGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTG---ER----VP   73 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSEEEEEEEECTTCCSSSCHHHHHHHHHHHHHTTCCGGGTEECCCCSCCC---SC----CT
T ss_pred             ChHHHHHHHHHHHHHhcccccChhhHHHHHhcCCCCCchHHHHHHHHHHHhhCcccccccccccccccc---CC----CC
Confidence            6999999998877764   58999999999 6999999999999999987321       112222111   12    13


Q ss_pred             CceeEEEEEcCCCceeEEEEEccCCeEEEEEEecCCc
Q 022057          236 DGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDV  272 (303)
Q Consensus       236 ~~i~ihS~R~g~ivg~H~V~f~~~~E~iel~H~a~sR  272 (303)
                      ++|+|||+|.|+++|+|+|+|.+++|+|||+|+|.||
T Consensus        74 ~~I~i~S~R~g~v~G~H~V~f~~~~E~i~i~H~A~sR  110 (110)
T d1diha2          74 GTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSR  110 (110)
T ss_dssp             TCEEEEEEECTTCCEEEEEEEEETTEEEEEEEEECST
T ss_pred             CccceEEeecCCccEEEEEEecCCCCEEEEEEEeCCC
Confidence            7899999999999999999999999999999999998

>d1vm6a2 d.81.1.3 (A:97-182) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=2.7e-31  Score=202.89  Aligned_cols=83  Identities=31%  Similarity=0.405  Sum_probs=75.4

Q ss_pred             CCcHHHHHHHHHHHHhccC--CCcEEEEEccC-CCCCCCcHHHHHHHHHHHhcCcccccCcccccccccCccccCCceeE
Q 022057          164 TLSIGSILLQQAAISASFH--YKNVEIVESRP-NARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRV  240 (303)
Q Consensus       164 N~SiGv~ll~~~a~~~~~~--~~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i  240 (303)
                      |||+|||+|+++++.+++.  .||++|+|.|| +|+|+|||||++|++.+.                        ++++|
T Consensus         1 NfSlGv~ll~~~~~~~~~~l~~~di~I~E~HH~~K~DaPSGTAl~l~~~i~------------------------~~i~i   56 (86)
T d1vm6a2           1 NFSIGINVLKRFLSELVKVLEDWDVEIVETHHRFKKDAPSGTAILLESALG------------------------KSVPI   56 (86)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTSEEEEEEEECTTCCCSSCHHHHHHHHHTT------------------------SCCCE
T ss_pred             CccHHHHHHHHHHHHHHHhCcccCEEEehhhhhcCCCccchhHHHHHHHHH------------------------hhhhh
Confidence            9999999999998777664  47999999999 699999999999988762                        46889


Q ss_pred             EEEEcCCCceeEEEEEccCCeEEEEEEecC
Q 022057          241 HSMVLPGLPSSTTVYFSRPGEVYSIKHDIT  270 (303)
Q Consensus       241 hS~R~g~ivg~H~V~f~~~~E~iel~H~a~  270 (303)
                      +|+|.|+++|+|+|+|.+++|+|+|+|+|.
T Consensus        57 ~S~R~g~~~G~H~v~f~~~~E~i~i~H~Al   86 (86)
T d1vm6a2          57 HSLRVGGVPGDHVVVFGNIGETIEIKHRAI   86 (86)
T ss_dssp             EEEECTTCCCEEEEEEECSSEEEEEEEEEC
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEEEeC
Confidence            999999999999999999999999999984

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=2.2e-29  Score=206.43  Aligned_cols=115  Identities=18%  Similarity=0.182  Sum_probs=101.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |||+|+|++|||||.+.+.+. .+++++++.+|.+.                       .+.+      .++||+||||+
T Consensus         1 mki~i~G~~GrMG~~i~~~~~-~~~~~l~~~id~~~-----------------------~~~~------~~~DVvIDFS~   50 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFS-EKGHELVLKVDVNG-----------------------VEEL------DSPDVVIDFSS   50 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEEETTE-----------------------EEEC------SCCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHh-cCCCeEEEEECCCc-----------------------HHHh------ccCCEEEEecC
Confidence            699999999999999998765 67999999998642                       0112      47999999999


Q ss_pred             chhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccC
Q 022057          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH  182 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~  182 (303)
                      |+++.+++++|+++++|+|+|||||++++.+.|++++++  +|++++||||+|++.+.++++.++..
T Consensus        51 p~~~~~~l~~~~~~~~p~ViGTTG~~~~~~~~i~~~ak~--~pv~~a~N~s~~~~~l~~~~~~~~~~  115 (128)
T d1vm6a3          51 PEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKE--VPVVQAYSRTVFAIGALKAAEFLVGK  115 (128)
T ss_dssp             GGGHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHTTT--SEEEECSCTHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHhh--CCEEeeeccChHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999988  99999999999999887777665543

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.67  E-value=2e-16  Score=134.46  Aligned_cols=136  Identities=12%  Similarity=0.150  Sum_probs=110.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      +|||||+|+ |+||+.+++.+...++++|+|++|++.  ..+..++.. +-+....+|+|+++++++    .++|+|+.+
T Consensus         1 kiki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~----~~iD~v~I~   73 (184)
T d1ydwa1           1 QIRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSL--EKAKAFATANNYPESTKIHGSYESLLED----PEIDALYVP   73 (184)
T ss_dssp             CEEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHHHHTTCCTTCEEESSHHHHHHC----TTCCEEEEC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCc--cccccchhccccccceeecCcHHHhhhc----cccceeeec
Confidence            489999998 999999999999999999999999752  122222210 012235679999999975    689999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC--cHHHHHHHHHHH
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAI  177 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~--SiGv~ll~~~a~  177 (303)
                      |++..+.+++..|+++|+|++|++| +.+.++.++|.++++++++.+++.-|+  +.....++++.+
T Consensus        74 tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~v~~~~r~~~~~~~~k~li~  140 (184)
T d1ydwa1          74 LPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDGTMWVHPQEACMVREFAR  140 (184)
T ss_dssp             CCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEECCCGGGCHHHHHHHHHTT
T ss_pred             ccchhhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEEEEEEeeecChHHHHHHHHHH
Confidence            9999999999999999999999999 688999999999999999998877665  555556666553

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=5.6e-16  Score=129.50  Aligned_cols=121  Identities=14%  Similarity=0.227  Sum_probs=104.5

Q ss_pred             ceeEEEEcCCcHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      +|||||+|+ |.||+. +...+...++++|++++|++.  ..+.++.   +.++++.++++++++      .++|+|+.+
T Consensus         1 Kiri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~l~------~~~D~V~I~   68 (164)
T d1tlta1           1 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTR--AKALPIC---ESWRIPYADSLSSLA------ASCDAVFVH   68 (164)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSC--TTHHHHH---HHHTCCBCSSHHHHH------TTCSEEEEC
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechh--Hhhhhhh---hcccccccccchhhh------hhccccccc
Confidence            589999998 999976 788888899999999999763  2333443   356788999999987      479999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~Si  167 (303)
                      |+|..+.+++..++++|+||++++| +.+.++.++|.++++++++.+.+.-|+-.
T Consensus        69 tp~~~h~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~~~r~  123 (164)
T d1tlta1          69 SSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNRRF  123 (164)
T ss_dssp             SCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGG
T ss_pred             ccchhccccccccccccceeeccccccCCHHHHHHHHHHHHHcCCcEEEEecccc
Confidence            9999999999999999999999999 78899999999999999998888766554

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=1e-15  Score=130.06  Aligned_cols=133  Identities=14%  Similarity=0.092  Sum_probs=105.9

Q ss_pred             ceeEEEEcCCcHHHHH-HHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCe-eecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRA-AVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~-i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      ++||||+|+ |++|+. ++..+.+.++ ++|++++|++.  ..+..+.   +.++. .+|+|+++++++    .++|+|+
T Consensus         3 kirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~ell~~----~~id~v~   72 (181)
T d1zh8a1           3 KIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTR--SHAEEFA---KMVGNPAVFDSYEELLES----GLVDAVD   72 (181)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSH--HHHHHHH---HHHSSCEEESCHHHHHHS----SCCSEEE
T ss_pred             CcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccH--hhhhhhh---ccccccceeeeeeccccc----cccceee
Confidence            589999998 999986 7888887555 79999999753  2223333   23444 468999999975    6799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCCC--cHHHHHHHHHHH
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAI  177 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N~--SiGv~ll~~~a~  177 (303)
                      .+|+|+.+.+++..++++|+||+|++| +.+.++.++|.++++++++.+.+.-|+  +.-...+.++-+
T Consensus        73 I~tp~~~h~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~~R~~~~~~~~~~~~~  141 (181)
T d1zh8a1          73 LTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRENSYQKEFEDFYQ  141 (181)
T ss_dssp             ECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGCCHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEeeccccccCHHHHHHHH
Confidence            999999999999999999999999999 789999999999999999988887763  433333444433

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=99.63  E-value=1.3e-15  Score=128.52  Aligned_cols=122  Identities=14%  Similarity=0.057  Sum_probs=101.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      +|||+|+|+ |+||+.+++.+.+.+++||++++|++..  . .      ...++..+.++++++      .++|+|+.+|
T Consensus         3 kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~--~-~------~~~~~~~~~~~~~~~------~~~D~Vvi~t   66 (170)
T d1f06a1           3 NIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRAT--L-D------TKTPVFDVADVDKHA------DDVDVLFLCM   66 (170)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSC--C-S------SSSCEEEGGGGGGTT------TTCSEEEECS
T ss_pred             cceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEecccc--c-c------cccccccchhhhhhc------cccceEEEeC
Confidence            599999998 9999999999999999999999997531  1 1      244566677777766      4799999999


Q ss_pred             CchhHHHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHH
Q 022057          115 DASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVigTT--G~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll  172 (303)
                      ++..+.+++..|+++|+++|...+  ..+.++.++|.++|++++..++++..|.-|..-+
T Consensus        67 p~~~h~~~a~~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~~~~~i~~g~~~~~~~~  126 (170)
T d1f06a1          67 GSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGRNPDFTAS  126 (170)
T ss_dssp             CTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCEEECSCSCHHHHHHH
T ss_pred             CCcccHHHHHHHHHCCCcEEEecCccccCHHHHHHHHHHHHhcCceEEEeceeccchhHH
Confidence            999999999999999999886544  3446778899999999999999888888887644

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=99.62  E-value=1.8e-15  Score=132.96  Aligned_cols=139  Identities=12%  Similarity=0.077  Sum_probs=112.3

Q ss_pred             CCceeEEEEcCCcHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhh---cCCCCCCeeecCCHHHHHhccccCCCcc
Q 022057           33 QSNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DMEQPLEIPVMSDLTMVLGSISQSKARA  108 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (303)
                      ..++||||+|| |.||+ .++..+...++++|++++|++.  ..+..++   +. ....+..|+|++++++.    .++|
T Consensus        31 ~~~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~--~~a~~~~~~~~i-~~~~~~~~~d~~ell~~----~~iD  102 (221)
T d1h6da1          31 DRRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNA--EKAKIVAAEYGV-DPRKIYDYSNFDKIAKD----PKID  102 (221)
T ss_dssp             CCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCH--HHHHHHHHHTTC-CGGGEECSSSGGGGGGC----TTCC
T ss_pred             CCCEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCH--HHHHHHHHhhcc-ccccccccCchhhhccc----ccce
Confidence            34799999998 99997 5778888889999999999752  2222222   22 12234568999999974    6899


Q ss_pred             EEEEcCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHHHHh
Q 022057          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISA  179 (303)
Q Consensus       109 VvIDfT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a~~~  179 (303)
                      +|+.+|++..+.+.+..|+++|+||+|++| +.+.++..+|.++++++++.+++.-|  |+-...-+.++.+..
T Consensus       103 ~V~I~tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~li~~~  176 (221)
T d1h6da1         103 AVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYNQFSAQLDHLAEAV  176 (221)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHHH
T ss_pred             eeeeccchhhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCcEEEeeccccCHHHHHHHHHHHhh
Confidence            999999999999999999999999999999 78999999999999999999888777  455676777777643

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=99.57  E-value=8.3e-15  Score=122.56  Aligned_cols=118  Identities=12%  Similarity=0.155  Sum_probs=98.9

Q ss_pred             ceeEEEEcCCcHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      .|||||+|+ |+||+. +...+...++++++ ++|++.  ..+..++   +.+++ .+++|++++++     .++|+|+.
T Consensus         1 tirvgiiG~-G~~~~~~~~~~l~~~~~~~~~-~~d~~~--~~~~~~~---~~~~~~~~~~~~~~ll~-----~~iD~V~I   68 (167)
T d1xeaa1           1 SLKIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNP--KVLGTLA---TRYRVSATCTDYRDVLQ-----YGVDAVMI   68 (167)
T ss_dssp             CEEEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCH--HHHHHHH---HHTTCCCCCSSTTGGGG-----GCCSEEEE
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHHhCCCcEEE-EEECCH--HHHHHHH---HhcccccccccHHHhcc-----cccceecc
Confidence            389999998 999975 88888889999987 677642  2223333   24555 46889999986     47999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT  164 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N  164 (303)
                      +|+|..+.+.+..|+++|+||++++| +.+.++.++|.+++++++..+.+.-|
T Consensus        69 ~tp~~~H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg~~  121 (167)
T d1xeaa1          69 HAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGFN  121 (167)
T ss_dssp             CSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEECG
T ss_pred             cccccccccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCCEEEEEeC
Confidence            99999999999999999999999999 78999999999999999999888766

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.51  E-value=1e-13  Score=122.53  Aligned_cols=142  Identities=12%  Similarity=0.107  Sum_probs=111.1

Q ss_pred             eecCCCCCceeEEEEcCCcH----HHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCC---CeeecCCHHHHH
Q 022057           27 CSTNPPQSNIKVIINGAVKE----IGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPL---EIPVMSDLTMVL   98 (303)
Q Consensus        27 ~~~~~~~~~ikV~V~G~~Gr----MG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~~~~~g~~~~~---gv~v~~dl~~~l   98 (303)
                      .|+.|...+|||||+|+ |.    +++.++.++.+ .++++|++++|++.  ..+.+++   +++   ....|+|+++++
T Consensus         8 ~~~~~~~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~--~~~~~~~---~~~~~~~~~~~~~~~~l~   81 (237)
T d2nvwa1           8 LSTVPSSRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQFQIVALYNPTL--KSSLQTI---EQLQLKHATGFDSLESFA   81 (237)
T ss_dssp             GGSSGGGCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTEEEEEEECSCH--HHHHHHH---HHTTCTTCEEESCHHHHH
T ss_pred             cccCCCCCCeEEEEEec-CccccHHHHHHHHHHHhcCCCeEEEEEEcCCH--HHHHHHH---Hhcccccceeecchhhcc
Confidence            46777777899999998 54    77888888865 57899999999752  2222222   123   346789999999


Q ss_pred             hccccCCCccEEEEcCCchhHHHHHHHHHHcC------CCeEEeCC-CCCHHHHHHHHHHhhhc-CCeEEEcC--CCcHH
Q 022057           99 GSISQSKARAVVIDFTDASTVYDNVKQATAFG------MRSVVYVP-HIQLETVSALSAFCDKA-SMGCLIAP--TLSIG  168 (303)
Q Consensus        99 ~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g------~~vVigTT-G~~~e~~~~L~~~a~~~-~i~vv~a~--N~SiG  168 (303)
                      ++    .++|+|+.+|++..+.+.+..|+++|      +||+|++| +.+.++.++|.++++++ ++++.+.-  -|..+
T Consensus        82 ~~----~~iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~~~~~~~v~~~~R~~p~  157 (237)
T d2nvwa1          82 QY----KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTIICLQGRYNSV  157 (237)
T ss_dssp             HC----TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEEEECGGGCCHH
T ss_pred             cc----cccceeeccCCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhcCCeeEEEEECCcCCHH
Confidence            75    78999999999999999999999988      59999999 89999999999988754 67766554  46777


Q ss_pred             HHHHHHHHHH
Q 022057          169 SILLQQAAIS  178 (303)
Q Consensus       169 v~ll~~~a~~  178 (303)
                      +.-+.++.+.
T Consensus       158 ~~~~k~~i~~  167 (237)
T d2nvwa1         158 VGNILRIYES  167 (237)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7767776654

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=5.9e-14  Score=117.92  Aligned_cols=130  Identities=16%  Similarity=0.129  Sum_probs=101.2

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      .++||+|+|+ |.||+.+++.+.+.++.+++++++.... +...      ...+.+ +.|+++++++    .++|+|+.+
T Consensus         6 ~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~~~-~~~~------~~~~~~-~~~~~e~l~~----~~iD~V~I~   72 (172)
T d1lc0a1           6 GKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSR-RELG------SLDEVR-QISLEDALRS----QEIDVAYIC   72 (172)
T ss_dssp             CSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECS-SCCC------EETTEE-BCCHHHHHHC----SSEEEEEEC
T ss_pred             CCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEeccch-HHHH------HhhccC-cCCHHHHHhC----CCcchhhhc
Confidence            3799999998 9999999999887766666666553210 1111      112222 4579999974    789999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEEEcCC--CcHHHHHHHHHH
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAA  176 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv~a~N--~SiGv~ll~~~a  176 (303)
                      |+|+.+.+++..|+++|+||++++| +.+.++.++|.++++++++.+.+.-|  |+.....+.++.
T Consensus        73 tp~~~H~~~~~~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i  138 (172)
T d1lc0a1          73 SESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLKNIFLKDQDIF  138 (172)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGGGTTHHHHHHHHH
T ss_pred             ccccccccccccccccchhhhcCCCccccHHHHHHHHHHHHHcCCeEEEecHHHhhHHHHHHHHHH
Confidence            9999999999999999999999999 78999999999999999998887666  455555555554

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.06  E-value=4.1e-10  Score=95.50  Aligned_cols=93  Identities=16%  Similarity=0.208  Sum_probs=72.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh--------------hcCCCCCCeeecCCHHHHHhc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV--------------CDMEQPLEIPVMSDLTMVLGS  100 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~--------------~g~~~~~gv~v~~dl~~~l~~  100 (303)
                      |+||||+|+ |||||.+++++.++|++|||++-|.... .....+              ... ...++++..++.+++. 
T Consensus         1 MIKVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~g~~~~~~~-   76 (178)
T d1b7go1           1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPN-YEAFIAHRRGIRIYVPQQSIKKF-EESGIPVAGTVEDLIK-   76 (178)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCS-HHHHHHHHTTCCEECCGGGHHHH-HTTTCCCCCCHHHHHH-
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCc-HHHHHhcccCcceeccCccceec-cccceecCCchhhhhh-
Confidence            799999997 9999999999999999999999885321 000000              000 2345666677777763 


Q ss_pred             cccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEe
Q 022057          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (303)
Q Consensus       101 ~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVig  136 (303)
                           ++|+|||+|......+.++.++++|+.+|+-
T Consensus        77 -----~vDiViecTG~f~~~e~a~~hl~~G~KvIi~  107 (178)
T d1b7go1          77 -----TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQ  107 (178)
T ss_dssp             -----HCSEEEECCSTTHHHHHHHHHHHTTCEEEEC
T ss_pred             -----cCCEEEECCCCcCCHHHHHHHHHcCCEEEEE
Confidence                 6999999999888899999999999999984

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.05  E-value=2.7e-09  Score=84.34  Aligned_cols=111  Identities=14%  Similarity=0.198  Sum_probs=96.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      -||.|-|.||+.|+.+.+...+. +..+|+.+.+.+-|+.         -.++|+|++.+|+.++    .++|+-+.|-+
T Consensus         8 trVivQGiTG~~G~~ht~~m~~y-GT~iVaGVtPgkgG~~---------~~giPVf~tV~eAv~~----~~~d~SvIfVP   73 (121)
T d1oi7a1           8 TRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGKGGME---------VLGVPVYDTVKEAVAH----HEVDASIIFVP   73 (121)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----SCCSEEEECCC
T ss_pred             CcEEEEcCCCcHHHHHHHHHHHh-CCceEeeeecCCCCcE---------EECCchHhhHHHHHHh----cCCeEEEEeeC
Confidence            58999999999999999988865 8999999988654433         2479999999999985    68999999999


Q ss_pred             chhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEE
Q 022057          116 ASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      |..+.+-+..|+++|+++|+.-| |....+..++.+.++++++.++
T Consensus        74 p~~a~dAi~EAi~agI~liv~ITEgVPv~Dm~~i~~~~~~~~~~li  119 (121)
T d1oi7a1          74 APAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLI  119 (121)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCEEe
Confidence            99999999999999999988877 8888888888888888877643

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.04  E-value=2.7e-10  Score=96.13  Aligned_cols=94  Identities=22%  Similarity=0.274  Sum_probs=68.7

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC--------C------CCCCeeecCCHHHHHh
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM--------E------QPLEIPVMSDLTMVLG   99 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~--------~------~~~gv~v~~dl~~~l~   99 (303)
                      |++||||+|+ |||||.+.+++.+++++|||++-|.... .....+...        .      ...+.++..++.+++ 
T Consensus         1 M~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   77 (172)
T d2czca2           1 MKVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPD-FEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL-   77 (172)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCS-HHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH-
T ss_pred             CcEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCCh-HHHHHhhhcCceeecccccceeeecccCccccchhhhhh-
Confidence            7899999998 9999999999999999999999985321 111111100        0      112334444566665 


Q ss_pred             ccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEE
Q 022057          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (303)
Q Consensus       100 ~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVi  135 (303)
                           .++|+|||+|..-...+.+...+++|+..|+
T Consensus        78 -----~~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi  108 (172)
T d2czca2          78 -----EKVDIIVDATPGGIGAKNKPLYEKAGVKAIF  108 (172)
T ss_dssp             -----TTCSEEEECCSTTHHHHHHHHHHHHTCEEEE
T ss_pred             -----ccCCEEEECCCCCCCHHHHHHHHHcCCCEEE
Confidence                 4799999999888889999999999988887

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=4.2e-09  Score=83.00  Aligned_cols=112  Identities=17%  Similarity=0.263  Sum_probs=96.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .-||.|-|.||+-|+.+.+...+ -+..+|+.+.+.+.|+.         -.|+|+|++.+|+.++    .++|+-+-|-
T Consensus         6 ~trVlvQGiTG~~G~~ht~~m~~-yGT~vVaGVtPgkgG~~---------~~giPVf~sV~eAv~~----~~~~~SvIfV   71 (119)
T d2nu7a1           6 NTKVICQGFTGSQGTFHSEQAIA-YGTKMVGGVTPGKGGTT---------HLGLPVFNTVREAVAA----TGATASVIYV   71 (119)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-HTCEEEEEECTTCTTEE---------ETTEEEESSHHHHHHH----HCCCEEEECC
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHH-hCCceEEEEccCCCCcc---------cCCCchhhHHHHHHHH----hCCCeEEEec
Confidence            35899999999999999998775 48999999988654433         3589999999999975    6899999999


Q ss_pred             CchhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCCeEE
Q 022057          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      +|..+.+-+..|+++|+++++.-| |....+.-++.++++++++.++
T Consensus        72 Pp~~a~dA~~EAi~agI~~iV~ITEgIP~~D~~~i~~~~~~~~~~li  118 (119)
T d2nu7a1          72 PAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI  118 (119)
T ss_dssp             CGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             cHHHHHHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHhhCCCEEe
Confidence            999999999999999999988766 8888888899999999887654

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.87  E-value=2e-08  Score=80.09  Aligned_cols=112  Identities=15%  Similarity=0.192  Sum_probs=92.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      -||.|-|.||+-|+.+.+...+ -+..+||.+.+.+-|+.         -.++|+|++.+|+.++    .++|+-+.|-+
T Consensus        16 TrVivQGiTG~~G~~ht~~m~~-YGT~iVaGVtPgKgG~~---------~~giPVf~tV~eA~~~----~~~daSvIfVP   81 (130)
T d1euca1          16 TKVICQGFTGKQGTFHSQQALE-YGTNLVGGTTPGKGGKT---------HLGLPVFNTVKEAKEQ----TGATASVIYVP   81 (130)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-HTCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEECCC
T ss_pred             CeEEEEcCCCcHHHHHHHHHHH-hcCCeEEeeccCCCCcc---------ccCccchhhHHHHHHh----cCCcEEEEecC
Confidence            5899999999999999998886 58999999988654433         3579999999999875    68999999999


Q ss_pred             chhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHh-hhcCCeEEEc
Q 022057          116 ASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFC-DKASMGCLIA  162 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~vVigTT-G~~~e~~~~L~~~a-~~~~i~vv~a  162 (303)
                      |..+.+-+..|+++|+++|+.-| |....+.-++.+.+ +++++. ++.
T Consensus        82 p~~a~dAi~EAi~agI~liV~ITEgIPv~Dm~~i~~~~~~~~~~~-liG  129 (130)
T d1euca1          82 PPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR-LIG  129 (130)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE-EEC
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHHHHHhCCCcE-EeC
Confidence            99999999999999999988777 88877766776544 554444 443

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=98.83  E-value=5.1e-09  Score=88.04  Aligned_cols=94  Identities=21%  Similarity=0.274  Sum_probs=66.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--c------CC------CCCCeeecCCHHHHHhc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--D------ME------QPLEIPVMSDLTMVLGS  100 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g------~~------~~~gv~v~~dl~~~l~~  100 (303)
                      |+||||+|+ ||+||.+.+++.++++++++++-|.... .....+.  +      ..      ...++++..+..+++  
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~--   76 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPD-FEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDML--   76 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCS-HHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHH--
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcH-HHHHHHHhcCCceEecccccceeecccCcccCCChhHhh--
Confidence            789999997 9999999999999999999999885321 0000000  0      00      112233444555555  


Q ss_pred             cccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEe
Q 022057          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (303)
Q Consensus       101 ~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVig  136 (303)
                          .++|+|||+|..-...+.+...+++|+.+|+-
T Consensus        77 ----~~vDvViEcTG~f~~~~~~~~hl~~G~K~vi~  108 (171)
T d1cf2o1          77 ----DEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ  108 (171)
T ss_dssp             ----HTCSEEEECCSTTHHHHHHHHHHHTTCEEEEC
T ss_pred             ----cCCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Confidence                36899999998888888888888999887773

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=98.68  E-value=4.2e-08  Score=81.10  Aligned_cols=100  Identities=18%  Similarity=0.245  Sum_probs=71.1

Q ss_pred             CceeEEEEcCCcHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecC-CHHHHHhccccCCCccEEE
Q 022057           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVvI  111 (303)
                      .++||||+|+ |++|+. +.+.+...|.+||+++.+++..+.. ..++   .+++++++. +++++++. .+..++|+|+
T Consensus         3 kkirvaIIGa-G~ig~~~~~~~l~~~~~~el~avas~~~~~~~-~~~a---~~~~i~~~~~~~d~l~~~-~~~~~iDiVf   76 (157)
T d1nvmb1           3 QKLKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDAASDG-LARA---QRMGVTTTYAGVEGLIKL-PEFADIDFVF   76 (157)
T ss_dssp             SCEEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCTTCHH-HHHH---HHTTCCEESSHHHHHHHS-GGGGGEEEEE
T ss_pred             CCcEEEEEcC-cHHHHHHHHHHHhhCCcceEEEEEecchhccc-hhhh---hhcCCcccccceeeeeec-ccccccCEEE
Confidence            3699999995 999985 6787778899999999987542221 1222   256777644 46666542 0113689999


Q ss_pred             EcCCchhHHHH--HHHHHHcCCCeEEeCCC
Q 022057          112 DFTDASTVYDN--VKQATAFGMRSVVYVPH  139 (303)
Q Consensus       112 DfT~p~a~~~~--~~~al~~g~~vVigTTG  139 (303)
                      ++|++..+.++  +..++++|+.||--|+.
T Consensus        77 ~ATpag~h~~~~~~~~aa~~G~~VID~s~a  106 (157)
T d1nvmb1          77 DATSASAHVQNEALLRQAKPGIRLIDLTPA  106 (157)
T ss_dssp             ECSCHHHHHHHHHHHHHHCTTCEEEECSTT
T ss_pred             EcCCchhHHHhHHHHHHHHcCCEEEEcccc
Confidence            99988777664  46678999999998874

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.59  E-value=1.6e-07  Score=75.05  Aligned_cols=111  Identities=14%  Similarity=0.165  Sum_probs=84.8

Q ss_pred             ceeEEEEcCC---cHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      +-.|+|+|++   |++|..+.+.+.+.-..++.. +.+..     .+      -.|++.|.|++++-      ..+|.++
T Consensus         8 PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~p-VnP~~-----~~------i~G~~~y~sl~dlp------~~vDlvv   69 (129)
T d2csua1           8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYP-VNIKE-----EE------VQGVKAYKSVKDIP------DEIDLAI   69 (129)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEE-ECSSC-----SE------ETTEECBSSTTSCS------SCCSEEE
T ss_pred             CCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEE-eccCc-----cc------cCCeEeecchhhcC------CCCceEE
Confidence            3579999998   999999999987543356654 44431     22      35789999999885      5799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCe-EEeCCCCCH------HHHHHHHHHhhhcCCeEEEcCC
Q 022057          112 DFTDASTVYDNVKQATAFGMRS-VVYVPHIQL------ETVSALSAFCDKASMGCLIAPT  164 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~v-VigTTG~~~------e~~~~L~~~a~~~~i~vv~a~N  164 (303)
                      -|++++.+.+.++.|.+.|+.- |+=+.||++      +..++|.+.|+++|++ ++.||
T Consensus        70 i~vp~~~~~~~~~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gir-v~GPN  128 (129)
T d2csua1          70 IVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR-IIGPN  128 (129)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE-EECSS
T ss_pred             EecChHHhHHHHHHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCE-EeCCC
Confidence            9999999999999999999985 444457753      1235688899999998 55787

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.47  E-value=5.8e-07  Score=70.40  Aligned_cols=105  Identities=16%  Similarity=0.232  Sum_probs=83.6

Q ss_pred             eEEEEcCC---cHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        37 kV~V~G~~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      .|+|+|++   ++.|..+.+.+.+ .++++.. +.+..     .+      -.|.++|.+++++-      ..+|+++-|
T Consensus         3 sIAVvGaS~~~~k~g~~v~~~L~~-~g~~V~p-VnP~~-----~~------i~G~~~y~sl~~lp------~~~D~vvi~   63 (116)
T d1y81a1           3 KIALVGASKNPAKYGNIILKDLLS-KGFEVLP-VNPNY-----DE------IEGLKCYRSVRELP------KDVDVIVFV   63 (116)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHHH-TTCEEEE-ECTTC-----SE------ETTEECBSSGGGSC------TTCCEEEEC
T ss_pred             EEEEEcccCCCCCcHHHHHHHHHH-CCCEEEE-Ecccc-----cc------ccCccccccchhcc------ccceEEEEE
Confidence            68999976   8899999998885 6778765 44431     22      24789999999885      478999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCC
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N  164 (303)
                      ++|+...+.++.|.+.|...++..+|...+   ++.++++++|+. ++.||
T Consensus        64 vp~~~~~~~l~~~~~~g~k~v~~~~g~~~~---~~~~~a~~~gi~-vigpn  110 (116)
T d1y81a1          64 VPPKVGLQVAKEAVEAGFKKLWFQPGAESE---EIRRFLEKAGVE-YSFGR  110 (116)
T ss_dssp             SCHHHHHHHHHHHHHTTCCEEEECTTSCCH---HHHHHHHHHTCE-EECSC
T ss_pred             eCHHHHHHHHHHHHhcCCceEEeccchhhH---HHHHHHHHcCCE-EEcCC
Confidence            999999999999999999999888876544   467789998887 45566

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=2.3e-07  Score=77.12  Aligned_cols=137  Identities=12%  Similarity=0.082  Sum_probs=82.6

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCC---cEEEEEEecCC-----CCcchhhhhcCCC--CCCeeecCCHHHHHhccc
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHS-----VGEDIGMVCDMEQ--PLEIPVMSDLTMVLGSIS  102 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~---~eLvg~vd~~~-----~g~d~~~~~g~~~--~~gv~v~~dl~~~l~~~~  102 (303)
                      +.+++|+|+|+ |.+|+.+++.+.+++.   ..++++.|+..     .|.+......+..  .....-..+.+.+...+.
T Consensus         2 ~k~i~I~l~G~-G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T d1ebfa1           2 TKVVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLK   80 (168)
T ss_dssp             CSEEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHT
T ss_pred             CCEEEEEEEeC-CHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccccccHHHHHHHhc
Confidence            34799999998 9999999999886543   57788887421     1111110000000  000111122222222111


Q ss_pred             cCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEeCCC-C--CHHHHHHHHHHhhhcCCeEEEcCCCcHHHHH
Q 022057          103 QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH-I--QLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (303)
Q Consensus       103 ~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG-~--~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~l  171 (303)
                      .....||++|+|.-+...++.+.++++|+|||..--+ +  .-+++++|.+++++++ .+.|-++-.=|.-+
T Consensus        81 ~~~~~~vivd~t~~~~~~~~~~~aL~~G~hVVTANK~~la~~~~~~~~L~~~a~~~~-~~~yEatVgaGiPi  151 (168)
T d1ebfa1          81 TSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALFSNKPTNG-FVYHEATVGAGLAA  151 (168)
T ss_dssp             TCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHTCCCTTCC-CEECGGGTTTTSHH
T ss_pred             cCCCceEEEEecCChHHHHHHHHHHHcCCeEEecCcccccCCHHHHHHHHHHHHHCC-cEEEeCeeeechhH
Confidence            2356789999998777888889999999999965442 2  3456778877777665 45555554444444

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.38  E-value=7.1e-07  Score=72.24  Aligned_cols=113  Identities=19%  Similarity=0.151  Sum_probs=80.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |||+|+|+ |.||+.+++.+.+ .+++++. +++..  .......    ..++.+..+.+++..      ++|+||-+.+
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~-~g~~v~~-~~~~~--~~~~~~~----~~~~~~~~~~~e~~~------~~diIi~~v~   65 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRS-RGVEVVT-SLEGR--SPSTIER----ARTVGVTETSEEDVY------SCPVVISAVT   65 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHH-TTCEEEE-CCTTC--CHHHHHH----HHHHTCEECCHHHHH------TSSEEEECSC
T ss_pred             CEEEEEcH-HHHHHHHHHHHHH-CCCeEEE-EcCch--hHHHHHh----hhcccccccHHHHHh------hcCeEEEEec
Confidence            69999997 9999999999985 5888875 44321  1111111    113334567788874      7999998889


Q ss_pred             chhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      ++...+.+..+...-...++-.+..+++...++.+.+++.  ..+-+|-+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~id~st~~p~~~~~l~~~~~~~--~~~d~~v~  113 (152)
T d1i36a2          66 PGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKG--GFVDAAIM  113 (152)
T ss_dssp             GGGHHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSSS--EEEEEEEC
T ss_pred             CchHHHHHHhhcccCCceeeccCcCCHHHHHHHHHHHhcc--CCCccccc
Confidence            9888998888887777788877777777778888888764  34555544

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.33  E-value=6e-07  Score=73.06  Aligned_cols=113  Identities=17%  Similarity=0.208  Sum_probs=76.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |||+++|+ |+||+.+++.+.+. +.++. +.+++.  ....++.   +++++.+..|.+++++      ++|+|+-+..
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~-~~~i~-v~~r~~--~~~~~l~---~~~g~~~~~~~~~~~~------~~dvIilavk   66 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQT-PHELI-ISGSSL--ERSKEIA---EQLALPYAMSHQDLID------QVDLVILGIK   66 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTS-SCEEE-EECSSH--HHHHHHH---HHHTCCBCSSHHHHHH------TCSEEEECSC
T ss_pred             CEEEEEec-cHHHHHHHHHHHhC-CCeEE-EEcChH--HhHHhhc---cccceeeechhhhhhh------ccceeeeecc
Confidence            69999998 99999999988754 56665 455431  2223333   3567788889999985      7999998888


Q ss_pred             chhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEE-cCCCcH
Q 022057          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI-APTLSI  167 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~-a~N~Si  167 (303)
                      |+...+.+.. ++.+..+|.-++|.+.++   |++.... +.+++. -||...
T Consensus        67 p~~~~~vl~~-l~~~~~iis~~agi~~~~---l~~~l~~-~~~ivr~mPN~~~  114 (152)
T d2ahra2          67 PQLFETVLKP-LHFKQPIISMAAGISLQR---LATFVGQ-DLPLLRIMPNMNA  114 (152)
T ss_dssp             GGGHHHHHTT-SCCCSCEEECCTTCCHHH---HHHHHCT-TSCEEEEECCGGG
T ss_pred             hHhHHHHhhh-cccceeEecccccccHHH---HHhhhcc-cccchhhccchhh
Confidence            8877766553 556666666566998765   4443322 245543 277643

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.32  E-value=3e-06  Score=69.16  Aligned_cols=117  Identities=18%  Similarity=0.173  Sum_probs=79.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC-
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT-  114 (303)
                      |||+++|. |.||+.+++.+.+ .++++. ++|++.  ....++.    +.+..+..+.+++.+      ++|++|-+- 
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~-~G~~V~-~~d~~~--~~~~~~~----~~~~~~~~~~~e~~~------~~d~ii~~v~   65 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLK-AGYSLV-VSDRNP--EAIADVI----AAGAETASTAKAIAE------QCDVIITMLP   65 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----HTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEEeh-hHHHHHHHHHHHH-CCCeEE-EEeCCc--chhHHHH----HhhhhhcccHHHHHh------CCCeEEEEcC
Confidence            68999997 9999999999885 688876 578652  2223332    356677889999885      799998764 


Q ss_pred             CchhHHHHHH------HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          115 DASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       115 ~p~a~~~~~~------~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      .++++.+.+.      ..++.|. +|+-.+..+++...++.+.+++.++..+=+ ..|-|.
T Consensus        66 ~~~~v~~v~~~~~~~~~~~~~g~-iiid~sT~~p~~~~~~~~~~~~~g~~~vda-pv~gg~  124 (161)
T d1vpda2          66 NSPHVKEVALGENGIIEGAKPGT-VLIDMSSIAPLASREISDALKAKGVEMLDA-PVSGGE  124 (161)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTC-EEEECSCCCHHHHHHHHHHHHTTTCEEEEC-CEESHH
T ss_pred             CHHHHHHHHhCCcchhhccCCCC-EEEECCCCCHHHHHHHHHHHHHcCCceecc-cccCCh
Confidence            5666666541      2222343 455555566677778888888888876554 455554

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.31  E-value=2.5e-07  Score=75.12  Aligned_cols=113  Identities=14%  Similarity=0.179  Sum_probs=73.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |||+++|+ |+||+.+++.+.+....++. ++|++.  .....+.   +++++.+.++.+++       .++|+||-+..
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~-v~~r~~--~~~~~l~---~~~~~~~~~~~~~v-------~~~Div~lavk   66 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIY-IANRGA--EKRERLE---KELGVETSATLPEL-------HSDDVLILAVK   66 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSCEEE-EECSSH--HHHHHHH---HHTCCEEESSCCCC-------CTTSEEEECSC
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCCCcEE-EEeCCh--hHHHHhh---hhcccccccccccc-------cccceEEEecC
Confidence            69999998 99999999988766556665 577642  2333343   35678888877664       46899998888


Q ss_pred             chhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE-EcCCCc
Q 022057          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLS  166 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv-~a~N~S  166 (303)
                      |....+.++.....+.-+|.-..|.+.++   |++..... .+++ .-||..
T Consensus        67 P~~~~~v~~~l~~~~~~viS~~ag~~~~~---l~~~l~~~-~~iir~mpn~p  114 (152)
T d1yqga2          67 PQDMEAACKNIRTNGALVLSVAAGLSVGT---LSRYLGGT-RRIVRVMPNTP  114 (152)
T ss_dssp             HHHHHHHHTTCCCTTCEEEECCTTCCHHH---HHHHTTSC-CCEEEEECCGG
T ss_pred             HHHHHHhHHHHhhcccEEeecccCCCHHH---HHHHhCcC-cceEeecccch
Confidence            98877776655444444443345888755   44443221 2333 336654

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.30  E-value=2.6e-06  Score=71.04  Aligned_cols=100  Identities=20%  Similarity=0.089  Sum_probs=68.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCC---CCCCeeecCCHHHHHhccccCCCcc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDME---QPLEIPVMSDLTMVLGSISQSKARA  108 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~~~~~g~~---~~~gv~v~~dl~~~l~~~~~~~~~D  108 (303)
                      ||||+|+|+||-.|+++++.+.++|++++..+....   ..|+...+.....   .........+.+...      .++|
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~d   74 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFS------ADVD   74 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTC------TTCC
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhh------cccc
Confidence            799999999999999999999999999999876532   3355443321100   011222233333332      4789


Q ss_pred             EEEEcCCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (303)
Q Consensus       109 VvIDfT~p~a~~~~~~~al~~g~~vVigTTG~  140 (303)
                      +++-++++....+.+....+.|+.++--...|
T Consensus        75 vvf~alp~~~s~~~~~~~~~~~~~vIDlSadf  106 (179)
T d2g17a1          75 VVFLATAHEVSHDLAPQFLQAGCVVFDLSGAF  106 (179)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEECSSTT
T ss_pred             eeeccccchhHHHHhhhhhhcCceeecccccc
Confidence            88866666777899999999998887544433

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.23  E-value=1.8e-06  Score=72.35  Aligned_cols=93  Identities=18%  Similarity=0.120  Sum_probs=62.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ||||+|+|+||-.|+.+++.+.++|.+||+.+..++..|+...+..-.....-.....+.+++.      .++|++.-++
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~------~~~dvvf~a~   74 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVS------KNCDVLFTAL   74 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHH------HHCSEEEECC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhc------cccceEEEcc
Confidence            7999999999999999999999999999999987777777776543110011111234556655      2689887455


Q ss_pred             CchhHHHHHHHHHHcCCCeEE
Q 022057          115 DASTVYDNVKQATAFGMRSVV  135 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVi  135 (303)
                      +.....+.+..  ..++.||-
T Consensus        75 p~~~s~~~~~~--~~~~~VID   93 (176)
T d1vkna1          75 PAGASYDLVRE--LKGVKIID   93 (176)
T ss_dssp             STTHHHHHHTT--CCSCEEEE
T ss_pred             ccHHHHHHHHh--hccceEEe
Confidence            44555555543  35555443

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.22  E-value=8.9e-07  Score=74.42  Aligned_cols=99  Identities=13%  Similarity=0.077  Sum_probs=65.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      +|||+|+|+||-.|+++++.+.++|.+||+.+..+...|+...+..........+.....++...     .++|+++-++
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~Dvvf~al   79 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADF-----SNVDAVFCCL   79 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCG-----GGCSEEEECC
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhh-----cccceeeecc
Confidence            79999999999999999999999999999988776666777655432111122222222222221     4789988666


Q ss_pred             CchhHHHHHHHHHHcCCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAFGMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~g~~vVigTTG  139 (303)
                      +.....+.+....+.++ +|.-..+
T Consensus        80 p~~~s~~~~~~l~~~~~-~v~~~~~  103 (183)
T d2cvoa1          80 PHGTTQEIIKGLPQELK-IVDLSAD  103 (183)
T ss_dssp             SSSHHHHHHHTSCSSCE-EEECSST
T ss_pred             ccchHHHHHHHHHhcCc-ccccchh
Confidence            66666777776555544 4443333

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.20  E-value=5.2e-06  Score=66.85  Aligned_cols=107  Identities=17%  Similarity=0.119  Sum_probs=83.1

Q ss_pred             eeEEEEcCC---cHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      -+|+|+|++   ++.|..+++.+.+ .++++.. +.+..     .+      -.|.++|.+++++-      ..+|+++-
T Consensus        20 ksIAVVGaS~~~~~~g~~v~~~L~~-~g~~v~p-VnP~~-----~~------i~G~~~~~sl~dlp------~~iD~v~i   80 (139)
T d2d59a1          20 KKIALVGASPKPERDANIVMKYLLE-HGYDVYP-VNPKY-----EE------VLGRKCYPSVLDIP------DKIEVVDL   80 (139)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHH-TTCEEEE-ECTTC-----SE------ETTEECBSSGGGCS------SCCSEEEE
T ss_pred             CeEEEEeecCCCCCchHHHHHHHHH-CCCEEEE-ECCcc-----cc------cCCCcccccccccC------ccceEEEE
Confidence            469999987   8999999999885 5788665 44431     22      34789999999875      47999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      |.+|+...+.++.|++.|...|+=-+|...+   ++.+.++++|+.++ .||=
T Consensus        81 ~vp~~~~~~~~~e~~~~g~k~v~~~~G~~~e---e~~~~a~~~gi~vi-g~~C  129 (139)
T d2d59a1          81 FVKPKLTMEYVEQAIKKGAKVVWFQYNTYNR---EASKKADEAGLIIV-ANRC  129 (139)
T ss_dssp             CSCHHHHHHHHHHHHHHTCSEEEECTTCCCH---HHHHHHHHTTCEEE-ESCC
T ss_pred             EeCHHHHHHHHHHHHHhCCCEEEEeccccCH---HHHHHHHHCCCEEE-cCCc
Confidence            9999999999999999999998877764333   35667888888644 5663

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.20  E-value=4.1e-06  Score=68.19  Aligned_cols=101  Identities=14%  Similarity=0.184  Sum_probs=66.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-e-eecCCHHHHHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-I-PVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g-v-~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |||+|+|+ |+||..+++.+. +.++++++ +|++.  ..+....    +.+ + ...++++ .+      .++|+||-+
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~-~~g~~V~~-~d~~~--~~~~~a~----~~~~~~~~~~~~~-~~------~~~DiIila   64 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLR-RRGHYLIG-VSRQQ--STCEKAV----ERQLVDEAGQDLS-LL------QTAKIIFLC   64 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEEE-ECSCH--HHHHHHH----HTTSCSEEESCGG-GG------TTCSEEEEC
T ss_pred             CEEEEEee-cHHHHHHHHHHH-HCCCEEEE-EECCc--hHHHHHH----Hhhccceeeeecc-cc------ccccccccc
Confidence            69999998 999999999886 56899875 68652  1112111    222 2 2334444 44      489999988


Q ss_pred             CCchhHHHHHHHHHH--cCCCeEEeCCCCCHHHHHHHHHHh
Q 022057          114 TDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFC  152 (303)
Q Consensus       114 T~p~a~~~~~~~al~--~g~~vVigTTG~~~e~~~~L~~~a  152 (303)
                      ++++...+.+.....  ....+|+-+++........+.+..
T Consensus        65 vp~~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~  105 (165)
T d2f1ka2          65 TPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLW  105 (165)
T ss_dssp             SCHHHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHS
T ss_pred             CcHhhhhhhhhhhhhhcccccceeeccccchHHHHHHHHhh
Confidence            888887887777655  355677766666655555555443

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.20  E-value=2.6e-06  Score=67.39  Aligned_cols=87  Identities=14%  Similarity=0.103  Sum_probs=68.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC--CCcchhhhhcCCCCCCeeec--CCHHHHHhccccCCCccEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~--~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVv  110 (303)
                      +.||+|+|| |++|+.+++.+..+++++++|++|.+.  .|+.         -.|++++  +++++++.     ...+++
T Consensus         3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~---------I~Gi~V~~~~~l~~~~~-----~~i~ia   67 (126)
T d2dt5a2           3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRP---------VRGGVIEHVDLLPQRVP-----GRIEIA   67 (126)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCE---------ETTEEEEEGGGHHHHST-----TTCCEE
T ss_pred             CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCE---------ECCEEEecHHHHHHHHh-----hcccEE
Confidence            579999998 999999999887788999999999642  2322         2367775  55666654     478888


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCeEEe
Q 022057          111 IDFTDASTVYDNVKQATAFGMRSVVY  136 (303)
Q Consensus       111 IDfT~p~a~~~~~~~al~~g~~vVig  136 (303)
                      +-+.+.+...+.+..+.++|++-+..
T Consensus        68 i~~i~~~~~~~I~d~l~~~gIk~I~~   93 (126)
T d2dt5a2          68 LLTVPREAAQKAADLLVAAGIKGILN   93 (126)
T ss_dssp             EECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             EEeCCHHHHHHHHHHHHHcCCCEEee
Confidence            87888888899999999999986654

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.18  E-value=1.2e-05  Score=65.54  Aligned_cols=115  Identities=14%  Similarity=0.114  Sum_probs=76.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      |.||+++|. |.||..+++.+.+ .++++. ++|++.  .....+.    ..+.....++.+++      ..+|+++.+-
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~-~g~~v~-~~d~~~--~~~~~~~----~~~~~~~~~~~e~~------~~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLK-AGYLLN-VFDLVQ--SAVDGLV----AAGASAARSARDAV------QGADVVISML   65 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHH-TTCEEE-EECSSH--HHHHHHH----HTTCEECSSHHHHH------TSCSEEEECC
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHH-CCCeEE-EEECch--hhhhhhh----hhhccccchhhhhc------cccCeeeecc
Confidence            579999997 9999999999885 578865 578642  2222222    34566677888888      4789887654


Q ss_pred             C-chhHHHHHHH---HHHc--CCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCC
Q 022057          115 D-ASTVYDNVKQ---ATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (303)
Q Consensus       115 ~-p~a~~~~~~~---al~~--g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N  164 (303)
                      . +++..+.+..   ....  .-.+|+-++..+++...++.+.+++.|+..+=+|-
T Consensus        66 ~~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv  121 (162)
T d3cuma2          66 PASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPV  121 (162)
T ss_dssp             SCHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCE
T ss_pred             cchhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEeccc
Confidence            3 3344444321   1111  12467777777788888888888888888776553

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=2.9e-05  Score=62.81  Aligned_cols=128  Identities=9%  Similarity=-0.015  Sum_probs=76.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc---CCcEEEEEEecCCCCcchhhhhcCCCCCCeeec--CCHHHHHhccccCCCccE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAV  109 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~---~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DV  109 (303)
                      |.||||+|+||-.|+.+++.+.++   |-.+|+....++..|..... .    .....+.  .+.++ +      .++|+
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~-~----~~~~~~~~~~~~~~-~------~~~Di   68 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSF-G----GTTGTLQDAFDLEA-L------KALDI   68 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGG-G----TCCCBCEETTCHHH-H------HTCSE
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccc-c----CCceeeecccchhh-h------hcCcE
Confidence            569999999999999999877655   56778765544433333221 1    1112222  23233 3      37999


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCC-eEEeCC-CC--C-------HH-HHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHH
Q 022057          110 VIDFTDASTVYDNVKQATAFGMR-SVVYVP-HI--Q-------LE-TVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI  177 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~g~~-vVigTT-G~--~-------~e-~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~  177 (303)
                      ++-+++.+...+....+.+.|.. +||-.. .|  +       +| ..+.|+ .+.++|+.-++    .+-.+-+.++.+
T Consensus        69 vF~a~~~~~s~~~~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~-~~~~~g~~~~i----g~~~~~~~~~~~  143 (146)
T d1t4ba1          69 IVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVIT-DGLNNGIRTFV----GGAAEPLRRMLR  143 (146)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHH-HHHHTTCCEEE----ECCCHHHHHHHH
T ss_pred             EEEecCchHHHHhhHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHH-HHHHcCCceEE----eccCcHHHHHHH
Confidence            98666666778999999999986 455444 32  2       22 233344 44566666555    222244555555


Q ss_pred             Hh
Q 022057          178 SA  179 (303)
Q Consensus       178 ~~  179 (303)
                      ++
T Consensus       144 ~~  145 (146)
T d1t4ba1         144 QL  145 (146)
T ss_dssp             HH
T ss_pred             Hh
Confidence            44

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.14  E-value=6e-06  Score=69.53  Aligned_cols=126  Identities=15%  Similarity=0.220  Sum_probs=79.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC--------CCcchhhhhcCCCCCCeeecCCHHHHHhccccCCC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (303)
                      |.||+|+|+ |.||.+++..+.+ .+.++. +++++.        .+.....+-+..-+-.+.++.|+++++      .+
T Consensus         7 m~KI~ViGa-G~wGtAlA~~La~-~g~~V~-l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~------~~   77 (189)
T d1n1ea2           7 LNKAVVFGS-GAFGTALAMVLSK-KCREVC-VWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAY------NG   77 (189)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHT-TEEEEE-EECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHH------TT
T ss_pred             eceEEEECC-CHHHHHHHHHHHH-cCCeEE-EEEecHHHHHHHhhcccccccccccccccccccchhhhhcc------CC
Confidence            568999998 9999999998774 455544 455421        011111111221234577889999998      47


Q ss_pred             ccEEEEcCCchhHHHHHHH--------HHHcCCCeEEeCCCCCHHHHH----HHHHHhhhcCCeEEEcCCCcHHH
Q 022057          107 RAVVIDFTDASTVYDNVKQ--------ATAFGMRSVVYVPHIQLETVS----ALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~~~--------al~~g~~vVigTTG~~~e~~~----~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      +|++|-..+.....+.++.        ....+.++|+.|-|+..+...    .+.+.-....+.++-.|||+--+
T Consensus        78 ad~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A~Ev  152 (189)
T d1n1ea2          78 AEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEV  152 (189)
T ss_dssp             CSCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHH
T ss_pred             CCEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcHHHH
Confidence            8999876666666666644        356788999887788543222    23333333447788899997544

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=98.13  E-value=4.8e-06  Score=66.68  Aligned_cols=112  Identities=13%  Similarity=0.127  Sum_probs=85.8

Q ss_pred             eeEEEEcCC---cHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      -.|+|+|++   +|.|..+.+.+.+ .++.... +.++..+.         .-.|.++|.+++++-      ..+|+++-
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~-~g~~~~~-v~~~~~~~---------~i~g~~~~~~l~~i~------~~iD~v~v   76 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLRE-QGYRVLP-VNPRFQGE---------ELFGEEAVASLLDLK------EPVDILDV   76 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHH-TTCEEEE-ECGGGTTS---------EETTEECBSSGGGCC------SCCSEEEE
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhc-CCCCceE-EEeccccc---------eeeceecccchhhcc------CCCceEEE
Confidence            469999987   7899999998874 5776554 33321111         124788999998885      47899999


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      |.+|+.+.+.++.|.+.|+..++-.+|..++   ++.++|+++|+.++ .+| -+++
T Consensus        77 ~~p~~~v~~~v~~~~~~g~k~i~~q~G~~~~---e~~~~a~~~Gi~vV-~~~-C~~i  128 (136)
T d1iuka_          77 FRPPSALMDHLPEVLALRPGLVWLQSGIRHP---EFEKALKEAGIPVV-ADR-CLMV  128 (136)
T ss_dssp             CSCHHHHTTTHHHHHHHCCSCEEECTTCCCH---HHHHHHHHTTCCEE-ESC-CHHH
T ss_pred             eccHHHHHHHHHHHHhhCCCeEEEecCccCH---HHHHHHHHcCCEEE-cCC-ccHH
Confidence            9999999999999999999999989987654   46788999999866 343 4544

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.09  E-value=3.3e-06  Score=68.30  Aligned_cols=95  Identities=15%  Similarity=0.128  Sum_probs=65.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      +|||+|+|+||-.|+++++.+.  ..|.++|..+..++..|+......     .... ..+++....     .++|+++-
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~-----~~~~-~~~~~~~~~-----~~~d~vf~   70 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAE-----SSLR-VGDVDSFDF-----SSVGLAFF   70 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETT-----EEEE-CEEGGGCCG-----GGCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeecc-----ccch-hccchhhhh-----ccceEEEe
Confidence            4899999999999999999886  468999997776655565543211     1111 222222221     46898885


Q ss_pred             cCCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057          113 FTDASTVYDNVKQATAFGMRSVVYVPHI  140 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~vVigTTG~  140 (303)
                      +++.+...+....+.+.|+.||-=+..|
T Consensus        71 a~p~~~s~~~~~~~~~~g~~VID~Ss~f   98 (144)
T d2hjsa1          71 AAAAEVSRAHAERARAAGCSVIDLSGAL   98 (144)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEETTCTT
T ss_pred             cCCcchhhhhccccccCCceEEeechhh
Confidence            5666777999999999999877543333

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.93  E-value=1.7e-05  Score=67.02  Aligned_cols=36  Identities=33%  Similarity=0.451  Sum_probs=31.5

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhc----CCcEEEEEEecC
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDSH   70 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~----~~~eLvg~vd~~   70 (303)
                      |+|||||+|+ ||+||.+.+.+.++    ++++++++.|+.
T Consensus         1 M~ikigINGF-GRIGR~vlR~~~~~~~~~~~i~iv~Ind~~   40 (190)
T d1k3ta1           1 MPIKVGINGF-GRIGRMVFQALCEDGLLGTEIDVVAVVDMN   40 (190)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHTTCBTTTEEEEEEEESC
T ss_pred             CCeEEEEECC-ChHHHHHHHHHHHcCCCCCCeEEEEEecCC
Confidence            7899999997 99999999988754    578999998863

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.85  E-value=7.2e-05  Score=60.57  Aligned_cols=93  Identities=13%  Similarity=-0.026  Sum_probs=59.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHh---cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~---~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      |||+|+|+||-.|+.+++.+.+   .|..+++....+...|+.. .+.+  ...-+.-..+.+ .+      .++|+++-
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~-~~~~--~~~~~~~~~~~~-~~------~~~DvvF~   70 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAP-NFGK--DAGMLHDAFDIE-SL------KQLDAVIT   70 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCC-CSSS--CCCBCEETTCHH-HH------TTCSEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccccc-ccCC--cceeeecccchh-hh------ccccEEEE
Confidence            6999999999999999997765   4568888665544333321 1111  111111122332 33      47899986


Q ss_pred             cCCchhHHHHHHHHHHcCCC-eEEeCC
Q 022057          113 FTDASTVYDNVKQATAFGMR-SVVYVP  138 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~g~~-vVigTT  138 (303)
                      +++.+...+.+..+++.|+. +||=-+
T Consensus        71 alp~~~s~~~~~~l~~~g~~~~VIDlS   97 (147)
T d1mb4a1          71 CQGGSYTEKVYPALRQAGWKGYWIDAA   97 (147)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCSEEEESS
T ss_pred             ecCchHHHHHhHHHHHcCCceEEEeCC
Confidence            66666779999999999975 565444

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=3.1e-05  Score=64.05  Aligned_cols=34  Identities=38%  Similarity=0.433  Sum_probs=31.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      .|||||+|+ ||+||.+.+.+.++++++++++=|+
T Consensus         1 tikigINGF-GRIGR~v~R~~~~~~~i~ivaINd~   34 (166)
T d1gado1           1 TIKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDL   34 (166)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             CeEEEEECC-cHHHHHHHHHHhhCCCeEEEEEeCC
Confidence            379999997 9999999999999999999998774

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=97.75  E-value=1.4e-05  Score=66.39  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=31.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ++||||+|+ ||+||.+.+.+.++++++++++-|+
T Consensus         1 kikIgINGF-GRIGR~v~R~~~~~~~~~ivaINd~   34 (169)
T d1u8fo1           1 KVKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDP   34 (169)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECS
T ss_pred             CcEEEEECC-cHHHHHHHHHHHHCCCcEEEEecCC
Confidence            589999997 9999999999999999999998884

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.75  E-value=0.00015  Score=57.96  Aligned_cols=120  Identities=14%  Similarity=0.091  Sum_probs=81.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-ee-------cCCHHHHHhccccCCCc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PV-------MSDLTMVLGSISQSKAR  107 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v-------~~dl~~~l~~~~~~~~~  107 (303)
                      .||.|+|+ |+||+.+++.+. +.+++++ ++|++.  ..+.+++.   .++. .+       ...+++.+      ...
T Consensus         3 K~IliiGa-G~~G~~~a~~L~-~~g~~V~-v~dr~~--~~a~~l~~---~~~~~~~~~~~~~~~~~~~~~i------~~~   68 (182)
T d1e5qa1           3 KSVLMLGS-GFVTRPTLDVLT-DSGIKVT-VACRTL--ESAKKLSA---GVQHSTPISLDVNDDAALDAEV------AKH   68 (182)
T ss_dssp             CEEEEECC-STTHHHHHHHHH-TTTCEEE-EEESCH--HHHHHHHT---TCTTEEEEECCTTCHHHHHHHH------TTS
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCEEE-EEECCh--HHHHHHHh---cccccccccccccchhhhHhhh------hcc
Confidence            58999998 999999999887 4578864 788753  23333332   2221 11       11233444      468


Q ss_pred             cEEEEcCCchhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHH
Q 022057          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (303)
Q Consensus       108 DVvIDfT~p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~l  171 (303)
                      |++|..++.......+..+.+.+++++.  .....+....+.+.+++.+..++..........+
T Consensus        69 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  130 (182)
T d1e5qa1          69 DLVISLIPYTFHATVIKSAIRQKKHVVT--TSYVSPAMMELDQAAKDAGITVMNEIGYSAMAKL  130 (182)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHHTCEEEC--SSCCCHHHHHTHHHHHHTTCEEECSCBCCHHHHH
T ss_pred             ceeEeeccchhhhHHHHHHHhhccceee--cccCcHHHHHHHHHhccccceeehhhhcchhhhh
Confidence            8998888888888899999999999874  3343445678888888877777766666654443

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=97.74  E-value=2.8e-05  Score=64.65  Aligned_cols=33  Identities=39%  Similarity=0.432  Sum_probs=30.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      +||||+|+ ||+||.+.+.+.++++++++++=|.
T Consensus         2 ikIgINGf-GRIGR~v~R~~l~~~~~~ivaINd~   34 (171)
T d3cmco1           2 VKVGINGF-GRIGRNVFRAALKNPDIEVVAVNDL   34 (171)
T ss_dssp             EEEEEESC-SHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             eEEEEECC-CHHHHHHHHHHhhCCCcEEEEEcCC
Confidence            79999997 9999999999999999999998764

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.64  E-value=3.5e-05  Score=63.69  Aligned_cols=33  Identities=33%  Similarity=0.367  Sum_probs=30.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      .||||+|+ ||+||.+.+.+.++++++++++=|+
T Consensus         1 tkigINGf-GRIGR~v~R~~~~~~~~~iv~INd~   33 (166)
T d2b4ro1           1 TKLGINGF-GRIGRLVFRAAFGRKDIEVVAINDP   33 (166)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECT
T ss_pred             CeEEEECC-CHHHHHHHHHHhhCCCcEEEEECCC
Confidence            38999998 9999999999999999999998775

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.63  E-value=5.4e-05  Score=61.37  Aligned_cols=94  Identities=13%  Similarity=0.115  Sum_probs=64.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      .||+|+|+||-.|+++++.+.++  |..++.....++..|+......     .........+...      .+.|+++-.
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~-----~~~~~~~~~~~~~------~~~d~~f~~   70 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKD-----QDITIEETTETAF------EGVDIALFS   70 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETT-----EEEEEEECCTTTT------TTCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccC-----Ccccccccchhhh------hhhhhhhhc
Confidence            58999999999999999999988  6777776665544454432211     1122222222332      467888766


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCCCC
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTTG~  140 (303)
                      +.++...+.+..+.+.|+.||-=...|
T Consensus        71 ~~~~~s~~~~~~~~~~~~~VIDlSsdf   97 (154)
T d2gz1a1          71 AGSSTSAKYAPYAVKAGVVVVDNTSYF   97 (154)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEECSSTT
T ss_pred             cCccchhhHHhhhccccceehhcChhh
Confidence            677777889999999999988655443

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=97.62  E-value=5.9e-05  Score=62.70  Aligned_cols=34  Identities=32%  Similarity=0.444  Sum_probs=29.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHh---cCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~---~~~~eLvg~vd~   69 (303)
                      .|||||+|+ ||+||.+.+.+.+   .++++++++=|+
T Consensus         1 tikigINGf-GRIGR~v~R~~~~~~~~~~~~vvaINd~   37 (173)
T d1obfo1           1 TIRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDL   37 (173)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECS
T ss_pred             CeEEEEECC-cHHHHHHHHHHHhCCCCCCeEEEEEcCC
Confidence            379999997 9999999998875   578999998774

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.61  E-value=0.00012  Score=60.68  Aligned_cols=33  Identities=30%  Similarity=0.379  Sum_probs=28.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcC--CcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~--~~eLvg~vd~   69 (303)
                      |||||+|+ ||+||.+.+.+.+.+  ++++|++=|+
T Consensus         1 ikIgINGf-GRIGR~v~R~~~~~~~~~i~ivaINd~   35 (172)
T d1rm4a1           1 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDT   35 (172)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECT
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEEcCC
Confidence            79999997 999999999887644  4999987764

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.58  E-value=0.0002  Score=59.09  Aligned_cols=126  Identities=16%  Similarity=0.083  Sum_probs=74.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC---------CCcchhhhhcCCCCCCeeecCCHHHHHhccccCCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~---------~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (303)
                      |||+|+|+ |.||.+++..+.+. +.++.- +.+..         ..+.-..+........+..++|+++++      .+
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~-g~~V~l-~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~   71 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDN-GNEVRI-WGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCL------EN   71 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHH-CCEEEE-ECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHH------TT
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEEE-EEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHH------hc
Confidence            79999998 99999999988854 555442 32210         000000000000112234578899988      47


Q ss_pred             ccEEEEcCCchhHHHHHHHHHH--cCCCeEEeCCCCCHH------HHHHHHHHhh--hcCCeEEEcCCCcHHHH
Q 022057          107 RAVVIDFTDASTVYDNVKQATA--FGMRSVVYVPHIQLE------TVSALSAFCD--KASMGCLIAPTLSIGSI  170 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~~~al~--~g~~vVigTTG~~~e------~~~~L~~~a~--~~~i~vv~a~N~SiGv~  170 (303)
                      +|+||...++..+.+.+.....  .+.++|+-|.|+.+.      ..+.+.+...  .....++-.|||+--+.
T Consensus        72 ad~Ii~avps~~~~~~~~~l~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~  145 (180)
T d1txga2          72 AEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVA  145 (180)
T ss_dssp             CSEEEECSCGGGHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHH
T ss_pred             cchhhcccchhhhHHHHHhhccccccceecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHH
Confidence            9999988888888887776544  445777777775211      1123333332  12355677899987653

>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein TM0796
species: Thermotoga maritima [TaxId: 2336]

Probab=97.56  E-value=0.00024  Score=64.61  Aligned_cols=105  Identities=11%  Similarity=0.084  Sum_probs=78.2

Q ss_pred             CcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCCCCCCeeecCCHHHHHhccccCCCccEEEEcC------Cc
Q 022057           44 VKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DA  116 (303)
Q Consensus        44 ~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT------~p  116 (303)
                      .||||..+++.   .+..++++ +|++..|+++++.. |.  ..++|++.|++++++     ..+|++|-=.      .|
T Consensus        25 ~gKTa~gLlRy---~~~~~v~~-V~~~~aG~~~~~~l~g~--~~~IPIv~s~~~A~~-----~g~~~liiGvAp~GG~lp   93 (338)
T d2g0ta1          25 HAKTTYGLLRH---SRLFKPVC-VVAEHEGKMASDFVKPV--RYDVPVVSSVEKAKE-----MGAEVLIIGVSNPGGYLE   93 (338)
T ss_dssp             GGHHHHHHHHH---CSSEEEEE-EESSCTTCBGGGTCC-C--CSCCBEESSHHHHHH-----TTCCEEEECCCSCCHHHH
T ss_pred             CchHhhhHHhc---cCCCeEEE-EECCCCCCchhhhcCCC--CCCCCEeCCHHHHHh-----cCCCEEEEEecccCCcCC
Confidence            48888888764   34555655 55566789998754 43  568999999999997     5899888633      27


Q ss_pred             hhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEE
Q 022057          117 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (303)
Q Consensus       117 ~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv  160 (303)
                      +...+.+..|+++|+++|.|=--+- .+..++.++|+++|+.++
T Consensus        94 ~~w~~~i~~Al~~Gl~IvsGLH~~L-~ddpel~~~A~~~g~~i~  136 (338)
T d2g0ta1          94 EQIATLVKKALSLGMDVISGLHFKI-SQQTEFLKIAHENGTRII  136 (338)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCCC---CCHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHHHHcCCeEEecchhhh-ccCHHHHHHHHhCCCEEE
Confidence            8899999999999999999765332 233578888999888765

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.55  E-value=0.00038  Score=56.03  Aligned_cols=106  Identities=16%  Similarity=0.113  Sum_probs=64.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCe--eecCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |.||+|+|+ |.||..+++.+.+. ...++.+ +|++.  .... .+   .+.+.  ....+.++...     ..+|++|
T Consensus         1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~-~D~~~--~~~~-~a---~~~~~~~~~~~~~~~~~~-----~~~dlIi   67 (171)
T d2g5ca2           1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYG-YDINP--ESIS-KA---VDLGIIDEGTTSIAKVED-----FSPDFVM   67 (171)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEE-ECSCH--HHHH-HH---HHTTSCSEEESCGGGGGG-----TCCSEEE
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEE-EECCh--HHHH-HH---HHhhcchhhhhhhhhhhc-----ccccccc
Confidence            457999998 99999999998754 3467665 67642  1111 11   12222  23445554443     4789999


Q ss_pred             EcCCchhHHHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHhh
Q 022057          112 DFTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCD  153 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~--g~~vVigTTG~~~e~~~~L~~~a~  153 (303)
                      -+++|+...+.+.....+  .-.+|+-+++-...-.+.+++...
T Consensus        68 la~p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~  111 (171)
T d2g5ca2          68 LSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG  111 (171)
T ss_dssp             ECSCHHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG
T ss_pred             ccCCchhhhhhhhhhhccccccccccccccccHHHHHHHHHhhc
Confidence            899999888877765543  335666655544334445554433

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.55  E-value=0.00058  Score=54.14  Aligned_cols=93  Identities=13%  Similarity=0.166  Sum_probs=65.3

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      .|.||+|+|+.|.||+.+++.+. ..++++.. +|++..                   .+.++.+      ..+|.++..
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~-~~G~~V~~-~d~~~~-------------------~~~~~~~------~~~~~v~~~   60 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLR-ASGYPISI-LDREDW-------------------AVAESIL------ANADVVIVS   60 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHH-TTTCCEEE-ECTTCG-------------------GGHHHHH------TTCSEEEEC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHH-HcCCCcEe-cccccc-------------------cccchhh------hhccccccc
Confidence            36799999955999999999887 46787764 665420                   1123344      478999989


Q ss_pred             CCchhHHHHHHHHHHcCC--CeEEeCCCCCHHHHHHHHHHhh
Q 022057          114 TDASTVYDNVKQATAFGM--RSVVYVPHIQLETVSALSAFCD  153 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~--~vVigTTG~~~e~~~~L~~~a~  153 (303)
                      +++....+.+...+..-.  .+|+-++....+..+++.+...
T Consensus        61 ~~~~~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~  102 (152)
T d2pv7a2          61 VPINLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT  102 (152)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS
T ss_pred             cchhhheeeeecccccccCCceEEEecccCHHHHHHHHHHcc
Confidence            999888888887776532  4666666777666666665543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.55  E-value=0.00077  Score=54.99  Aligned_cols=125  Identities=10%  Similarity=0.113  Sum_probs=74.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -+|+++|. |.||..+++.+.+ .+++++ ++|++.  ..+.++...+ .........+.+++.+..   ..+|++|-+.
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~ii~~~   74 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMND-HGFVVC-AFNRTV--SKVDDFLANEAKGTKVLGAHSLEEMVSKL---KKPRRIILLV   74 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHH-TTCCEE-EECSST--HHHHHHHHTTTTTSSCEECSSHHHHHHHB---CSSCEEEECS
T ss_pred             CcEEEEeE-hHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHHHhccccccccchhhhhhhhhhh---cccceEEEec
Confidence            47999998 9999999999985 578876 578653  2222232110 011112233444443321   4678777554


Q ss_pred             -CchhHHHHHHHHHHcCC--CeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          115 -DASTVYDNVKQATAFGM--RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       115 -~p~a~~~~~~~al~~g~--~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                       .++.+.+.....+..-.  .+|+-++..++++..++.+.+++.++..+ .+.+|=|.
T Consensus        75 ~~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~l-dapvsGg~  131 (176)
T d2pgda2          75 KAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFV-GSGVSGGE  131 (176)
T ss_dssp             CTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE-EEEEESHH
T ss_pred             CchHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCcee-ccccccCc
Confidence             44555555544443322  35666666666777788777778787755 55566666

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00043  Score=57.41  Aligned_cols=87  Identities=22%  Similarity=0.258  Sum_probs=53.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-------cCCHHHHHhccccCCCc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKAR  107 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~  107 (303)
                      |.||.|.|++|.+|+.+++.+.+ .++++.++.....   ...+.    ...++.+       .+++++++      .++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~-~g~~V~~~~R~~~---~~~~~----~~~~~~~~~gD~~d~~~l~~al------~~~   68 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQ-AGYEVTVLVRDSS---RLPSE----GPRPAHVVVGDVLQAADVDKTV------AGQ   68 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCGG---GSCSS----SCCCSEEEESCTTSHHHHHHHH------TTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CcCEEEEEEcChh---hcccc----cccccccccccccchhhHHHHh------cCC
Confidence            67999999999999999998885 5799988764211   00100    0112222       12344455      478


Q ss_pred             cEEEEcCCc-----------hhHHHHHHHHHHcCCCeEE
Q 022057          108 AVVIDFTDA-----------STVYDNVKQATAFGMRSVV  135 (303)
Q Consensus       108 DVvIDfT~p-----------~a~~~~~~~al~~g~~vVi  135 (303)
                      |+||.+..+           +.....+..+.++|++-++
T Consensus        69 d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i  107 (205)
T d1hdoa_          69 DAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVV  107 (205)
T ss_dssp             SEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             CEEEEEeccCCchhhhhhhHHHHHHHHHHHHhcCCCeEE
Confidence            998876421           2234556677777776433

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00019  Score=57.14  Aligned_cols=98  Identities=15%  Similarity=0.187  Sum_probs=59.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      |||+|+|+ |.||..++..+.+ .++++..+........... ..+.. ......+..+..+.+      ..+|++|-++
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~-~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~D~iii~v   71 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCK-QGHEVQGWLRVPQPYCSVN-LVETDGSIFNESLTANDPDFL------ATSDLLLVTL   71 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEEEECSSCCSEEEEE-EECTTSCEEEEEEEESCHHHH------HTCSEEEECS
T ss_pred             CEEEEECc-CHHHHHHHHHHHH-CCCceEEEEcCHHHhhhhc-cccCCccccccccccchhhhh------cccceEEEee
Confidence            79999998 9999999998874 6788775432221111110 01100 011122333334444      3799999888


Q ss_pred             CchhHHHHHHHHHH---cCCCeEEeCCCCCH
Q 022057          115 DASTVYDNVKQATA---FGMRSVVYVPHIQL  142 (303)
Q Consensus       115 ~p~a~~~~~~~al~---~g~~vVigTTG~~~  142 (303)
                      .+..+.+.++.+..   .+..+|+...|+..
T Consensus        72 ka~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~  102 (167)
T d1ks9a2          72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGT  102 (167)
T ss_dssp             CGGGHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred             cccchHHHHHhhccccCcccEEeeccCcccH
Confidence            88777776666554   45668877778754

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.45  E-value=0.00069  Score=55.14  Aligned_cols=119  Identities=12%  Similarity=0.135  Sum_probs=68.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC----CCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME----QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~----~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |||+|+|. |+||..+++.+.+ .++++. ++|++.  ..+..+....    .........+.++++...   ..++.++
T Consensus         2 MkIGvIGl-G~MG~~ma~~L~~-~G~~V~-~~dr~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   73 (178)
T d1pgja2           2 MDVGVVGL-GVMGANLALNIAE-KGFKVA-VFNRTY--SKSEEFMKANASAPFAGNLKAFETMEAFAASL---KKPRKAL   73 (178)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHH-TTCCEE-EECSSH--HHHHHHHHHTTTSTTGGGEEECSCHHHHHHHB---CSSCEEE
T ss_pred             CEEEEEee-hHHHHHHHHHHHH-CCCeEE-EEECCH--HHHHHHHHcCCccccccchhhhhhhhHHHHhc---ccceEEE
Confidence            69999997 9999999999885 578875 588642  1222221100    011233445666655431   3556666


Q ss_pred             EcCCchh-HHH---HHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057          112 DFTDAST-VYD---NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus       112 DfT~p~a-~~~---~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                      +...+.. ...   .+...+..|. +++-++-.+++...++.+..++.++..+-+|
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~-iii~~st~~~~~~~~~~~~l~~~~~~~ldap  128 (178)
T d1pgja2          74 ILVQAGAATDSTIEQLKKVFEKGD-ILVDTGNAHFKDQGRRAQQLEAAGLRFLGMG  128 (178)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTC-EEEECCCCCHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             EeecCcchhhhhhhhhhhhccccc-eecccCccchhHHHHHHHHHhhcceeEeccc
Confidence            6554433 333   3334444444 4444454455666677777777777666554

>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Myo-inositol 1-phosphate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.43  E-value=0.001  Score=57.41  Aligned_cols=139  Identities=20%  Similarity=0.191  Sum_probs=93.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc----------------------CCcEEEEEEec--CCCCcchhhhhcCC-------
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA----------------------RGMEVAGAIDS--HSVGEDIGMVCDME-------   83 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~----------------------~~~eLvg~vd~--~~~g~d~~~~~g~~-------   83 (303)
                      ++||+|+|- |+-.+.+++-+.-.                      .|+|+|+++|-  ++.|+|+.+..-..       
T Consensus         2 kIrVaIvGv-GNcASslvqGieyyk~~~~~~~v~Glm~~~iggY~v~DIe~VaafDVD~~KVGkdlseAi~a~pN~t~~~   80 (243)
T d1gr0a1           2 EVRVAIVGV-GNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAIFASENNTIKI   80 (243)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTSBHHHHTTSTTCCCCCC
T ss_pred             ceEEEEEcc-hHHHHHHHHHHHHHhcCCCccccccceecccCCccccceEEEEEEecCccccCCcHHHHHhcCCCCceee
Confidence            699999998 99999999988521                      15599999984  56788886643110       


Q ss_pred             ---CCCCeeec-----------------------CCHHHHHhccccCCCccEEEEcCC---chhHHHHHHHHHHcCCCeE
Q 022057           84 ---QPLEIPVM-----------------------SDLTMVLGSISQSKARAVVIDFTD---ASTVYDNVKQATAFGMRSV  134 (303)
Q Consensus        84 ---~~~gv~v~-----------------------~dl~~~l~~~~~~~~~DVvIDfT~---p~a~~~~~~~al~~g~~vV  134 (303)
                         .+.|+.+.                       .|+-+.|.    +.++||+|.+-+   -++..-++..|+++|+.+|
T Consensus        81 ~d~p~~gv~V~~G~~LDg~~~~~~~~~~~~~~~~~dvv~~Lk----~~~~dVlvnylPvGse~A~~~YA~~al~Ag~aFV  156 (243)
T d1gr0a1          81 ADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALK----EAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFV  156 (243)
T ss_dssp             SCCCCCCCBCEECCCTTSCCHHHHTTSCBCSSCCCCHHHHHH----HTTCSEEEECCCTTCHHHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCCCCEEeccCCccccchhhhcccCCCCccHHHHHHHHH----hcCCCEEEEecCCCcHHHHHHHHHHHHHcCceEE
Confidence               12222221                       12334444    368999999863   4677889999999999999


Q ss_pred             EeCCCCCHHHHHHHHHHhhhcCCeEE----EcCCCcHHHH-HHHHHHHHhc
Q 022057          135 VYVPHIQLETVSALSAFCDKASMGCL----IAPTLSIGSI-LLQQAAISAS  180 (303)
Q Consensus       135 igTTG~~~e~~~~L~~~a~~~~i~vv----~a~N~SiGv~-ll~~~a~~~~  180 (303)
                      -.+|-|-..+ .+..+..+++|+|++    .||| |-|+. -+.++++.+.
T Consensus       157 N~iP~fIAsd-p~w~~kF~e~glpivGDDikspn-~AgvviDaiR~aKla~  205 (243)
T d1gr0a1         157 NALPVFIASD-PVWAKKFTDARVPIVGDDIKSPN-SAGVIIDAVRAAKIAK  205 (243)
T ss_dssp             ECSSCCSTTS-HHHHHHHHHHTCEEEESSBCCHH-HHHHHHHHHHHHHHHH
T ss_pred             ecccccccCC-HHHHHHHHHcCCcEEcccccccc-cchhHHHHHHHHHHHH
Confidence            9999763322 245666778889987    3544 44553 3455555544

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.30  E-value=0.0011  Score=53.29  Aligned_cols=93  Identities=16%  Similarity=0.177  Sum_probs=58.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh----------cC-CCCCCeeecCCHHHHHhccccC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----------DM-EQPLEIPVMSDLTMVLGSISQS  104 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~----------g~-~~~~gv~v~~dl~~~l~~~~~~  104 (303)
                      .||+|+|+ |.||..++..+.+ .++++. ++|++.  .....+.          +. .......+++|+++++      
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~-~G~~V~-~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~------   70 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLAL-KGQSVL-AWDIDA--QRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV------   70 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH------
T ss_pred             CEEEEECc-cHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh------
Confidence            58999998 9999999998885 578776 466531  1111110          00 0112234567889988      


Q ss_pred             CCccEEEEcCCchhHHHHHHHHHHc---CCCeEEeCCCC
Q 022057          105 KARAVVIDFTDASTVYDNVKQATAF---GMRSVVYVPHI  140 (303)
Q Consensus       105 ~~~DVvIDfT~p~a~~~~~~~al~~---g~~vVigTTG~  140 (303)
                      .++|++|-++.+..+.+.+.....+   +. +|+...|.
T Consensus        71 ~~aD~iii~v~~~~~~~~~~~i~~~l~~~~-~iv~~~g~  108 (184)
T d1bg6a2          71 KDADVILIVVPAIHHASIAANIASYISEGQ-LIILNPGA  108 (184)
T ss_dssp             TTCSEEEECSCGGGHHHHHHHHGGGCCTTC-EEEESSCC
T ss_pred             cCCCEEEEEEchhHHHHHHHHhhhccCCCC-EEEEeCCC
Confidence            4799999888777776666555443   44 44445443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.24  E-value=0.0016  Score=50.42  Aligned_cols=118  Identities=14%  Similarity=0.255  Sum_probs=67.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-c---CCHHHHHhccccCCCccEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVvI  111 (303)
                      |||.|+|+ |++|+.+++.+. ..+.+++ ++|.+.  .....+.   ..+++.+ +   .|.+-+.+.  .-.++|.++
T Consensus         1 M~IvI~G~-G~~G~~la~~L~-~~g~~v~-vid~d~--~~~~~~~---~~~~~~vi~Gd~~~~~~l~~~--~i~~a~~vv   70 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLS-EKGHDIV-LIDIDK--DICKKAS---AEIDALVINGDCTKIKTLEDA--GIEDADMYI   70 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHHH---HHCSSEEEESCTTSHHHHHHT--TTTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCCcc-eecCCh--hhhhhhh---hhhhhhhccCcccchhhhhhc--Chhhhhhhc
Confidence            79999998 999999999887 4577776 466542  1112221   1234333 2   233322211  124689888


Q ss_pred             EcCCchhH-HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHH
Q 022057          112 DFTDASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (303)
Q Consensus       112 DfT~p~a~-~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiG  168 (303)
                      -.|..+.. .-....+.+.|.+-++..+- +++..+.    .++.|+..++.|.+-.+
T Consensus        71 ~~t~~d~~N~~~~~~~k~~~~~~iI~~~~-~~~~~~~----l~~~G~d~vi~p~~~~a  123 (132)
T d1lssa_          71 AVTGKEEVNLMSSLLAKSYGINKTIARIS-EIEYKDV----FERLGVDVVVSPELIAA  123 (132)
T ss_dssp             ECCSCHHHHHHHHHHHHHTTCCCEEEECS-STTHHHH----HHHTTCSEEECHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHcCCceEEEEec-CHHHHHH----HHHCCCCEEECHHHHHH
Confidence            77755433 33344555777776665443 3333333    35566777888875433

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=97.21  E-value=0.00058  Score=56.28  Aligned_cols=32  Identities=31%  Similarity=0.387  Sum_probs=28.0

Q ss_pred             eEEEEcCCcHHHHHHHHHHHh--cCCcEEEEEEec
Q 022057           37 KVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDS   69 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~--~~~~eLvg~vd~   69 (303)
                      ||||+|+ ||+||.+.+.+.+  .+++++|++=|.
T Consensus         2 kIgINGf-GRIGR~v~R~~~~~~~~~i~vvaINd~   35 (169)
T d1hdgo1           2 RVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDL   35 (169)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECS
T ss_pred             EEEEECC-ChHHHHHHHHHHhccCCCEEEEEeccC
Confidence            8999997 9999999998875  568999988664

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=97.20  E-value=0.00014  Score=59.97  Aligned_cols=32  Identities=44%  Similarity=0.497  Sum_probs=28.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      |||||+|+ ||+||.+.+.+. .++++++++=|.
T Consensus         1 ikigINGf-GRIGR~~~R~l~-~~~i~iv~INd~   32 (168)
T d2g82a1           1 MKVGINGF-GRIGRQVFRILH-SRGVEVALINDL   32 (168)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HHTCCEEEEECS
T ss_pred             CEEEEECC-cHHHHHHHHHHh-cCCCEEEEECCC
Confidence            79999998 999999999766 578999998774

>d1vjpa1 c.2.1.3 (A:0-209,A:317-381) Hypothetical protein TM1419 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1419
species: Thermotoga maritima [TaxId: 2336]

Probab=96.96  E-value=0.0045  Score=54.55  Aligned_cols=143  Identities=15%  Similarity=0.177  Sum_probs=86.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHh--------------------cCCcEEEEEEec--CCCCcchhhhhcC----------
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTK--------------------ARGMEVAGAIDS--HSVGEDIGMVCDM----------   82 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~--------------------~~~~eLvg~vd~--~~~g~d~~~~~g~----------   82 (303)
                      ||||+|+|. |..++.++.-+..                    .+|.+++|++|.  .+.|+++.+..-.          
T Consensus         2 mIrV~ivG~-GnvAStlv~Gl~~~k~g~~~~~G~p~~~~~~~~~~Dievvgg~DId~~kvgk~l~eai~~~~n~~~~~~~   80 (275)
T d1vjpa1           2 MVKVLILGQ-GYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSLTS   80 (275)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEECBTTTTTSBHHHHHHHHCTTCCCCSS
T ss_pred             ceEEEEeec-cHHHHHHHHHHHHHHcCCCCCcCcccccccCCCCCCcEEEEEecCCcchhHHHHHHHHHhchhhhhhhhc
Confidence            799999998 9999998876632                    126689999994  3456655432200          


Q ss_pred             -C----------------CCCCeeecCCHHHHHhcc---ccCCCccEEEEcCCch------------------------h
Q 022057           83 -E----------------QPLEIPVMSDLTMVLGSI---SQSKARAVVIDFTDAS------------------------T  118 (303)
Q Consensus        83 -~----------------~~~gv~v~~dl~~~l~~~---~~~~~~DVvIDfT~p~------------------------a  118 (303)
                       .                ...+.....++.+.++.+   +++.+.||+|..++.|                        +
T Consensus        81 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~e~v~~i~~di~~~~~~Vvvn~asTE~ylpvgs~~~~~~a~~~~~~~~i~a  160 (275)
T d1vjpa1          81 DPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKERLTA  160 (275)
T ss_dssp             CCBCEECCCTTTTTTSSCCBCCGGGSSCHHHHHHHHHHHHHHHCCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTTTCCH
T ss_pred             ccCcccceecCccccccccccccccccchHHHHHHHHHHHHhcchhheeecccccccCCCCcHHHHHHHhhccCccccCh
Confidence             0                000111112223322211   1224678999853211                        2


Q ss_pred             HHHHHHHHH-----HcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcH--HHHHHHH--HHHHhc
Q 022057          119 VYDNVKQAT-----AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI--GSILLQQ--AAISAS  180 (303)
Q Consensus       119 ~~~~~~~al-----~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~Si--Gv~ll~~--~a~~~~  180 (303)
                      ..=++..|+     +.|++.|-++|-+... ...+.++++++|+| +..--|.-  |..++.+  |+..+.
T Consensus       161 S~~YA~AAL~~~~~~aG~~fVN~~P~~ia~-~Pal~ela~~~gvP-i~GdD~Ksq~G~Tiv~~~~La~lf~  229 (275)
T d1vjpa1         161 TQVYAYAAALYANKRGGAAFVNVIPTFIAN-DPAFVELAKENNLV-VFGDDGSPALGGLLVDLVRLGKIAL  229 (275)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEECSSSCSTT-CHHHHHHHHHTTEE-EECSSBHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCCceeEeccCccccC-CHHHHHHHHHcCCc-EEcccchhhhhHHHHHHHHHHHHHH
Confidence            333445555     8899999999966432 24688889999998 45566666  8888755  455544

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.93  E-value=4.9e-05  Score=60.61  Aligned_cols=89  Identities=8%  Similarity=0.018  Sum_probs=51.0

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCCch
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS  117 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p~  117 (303)
                      |+++|+ |+||+.+++.+.+  +.++..+++++.  ..+..+..   .++.. +.+++++.      ..+|+|+-+.+|+
T Consensus         2 IgfIG~-G~mg~~l~~~L~~--~~~~~~v~~R~~--~~~~~l~~---~~~~~-~~~~~~~~------~~~DiVil~v~d~   66 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKD--RYEIGYILSRSI--DRARNLAE---VYGGK-AATLEKHP------ELNGVVFVIVPDR   66 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC------CCCEECSSH--HHHHHHHH---HTCCC-CCSSCCCC------C---CEEECSCTT
T ss_pred             EEEEeC-cHHHHHHHHHHHh--CCCEEEEEeCCh--hhhcchhh---ccccc-ccchhhhh------ccCcEEEEeccch
Confidence            689997 9999999997743  566666777642  22333432   23333 34556665      4789999888777


Q ss_pred             hHHHHHHHHHHcCCCeEEeCC-CCCH
Q 022057          118 TVYDNVKQATAFGMRSVVYVP-HIQL  142 (303)
Q Consensus       118 a~~~~~~~al~~g~~vVigTT-G~~~  142 (303)
                      ...+.+......++ +|+-|+ +.+.
T Consensus        67 ~i~~v~~~l~~~~~-ivi~~s~~~~~   91 (153)
T d2i76a2          67 YIKTVANHLNLGDA-VLVHCSGFLSS   91 (153)
T ss_dssp             THHHHHTTTCCSSC-CEEECCSSSCG
T ss_pred             hhhHHHhhhcccce-eeeecccchhh
Confidence            77776655433454 444454 4443

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=96.88  E-value=0.00069  Score=55.81  Aligned_cols=31  Identities=35%  Similarity=0.458  Sum_probs=27.6

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ||||+|+ ||+||.+.+.+.+. +++++++-|+
T Consensus         2 kIgINGf-GRIGR~~~R~~~~~-~~~ivaINd~   32 (169)
T d1dssg1           2 KIGINGF-GRIGRLVLRAALEM-GAQVVAVNDP   32 (169)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHH-TCCEEEEECT
T ss_pred             eEEEECC-cHHHHHHHHHHHhC-CCcEEEECCC
Confidence            8999997 99999999988865 6899998885

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.85  E-value=0.0025  Score=50.73  Aligned_cols=110  Identities=15%  Similarity=0.080  Sum_probs=62.7

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc-CC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF-TD  115 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf-T~  115 (303)
                      ||+++|. |+||..+++.+.+ .+..++  +++..  .....+..   ..+.. ..+.+.+       .++|++|-. ..
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~-~g~~~~--~~~~~--~~~~~~~~---~~~~~-~~~~~~~-------~~~~~~i~~~~~   64 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLAR-RFPTLV--WNRTF--EKALRHQE---EFGSE-AVPLERV-------AEARVIFTCLPT   64 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHT-TSCEEE--ECSST--HHHHHHHH---HHCCE-ECCGGGG-------GGCSEEEECCSS
T ss_pred             eEEEEeH-HHHHHHHHHHHHh-CCCEEE--EeCCH--HHHHHHHH---HcCCc-ccccccc-------cceeEEEecccc
Confidence            7999997 9999999999984 566543  44321  11112210   11211 2233333       246666533 34


Q ss_pred             chhHHHHHHHHHHcC--CCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcC
Q 022057          116 ASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (303)
Q Consensus       116 p~a~~~~~~~al~~g--~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~  163 (303)
                      ++.+.......++..  -.+++-++..++++..++.+.+++.|+..+=+|
T Consensus        65 ~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldap  114 (156)
T d2cvza2          65 TREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAP  114 (156)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECC
T ss_pred             hhhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEecc
Confidence            555555444444433  335555666667777888888888888766443

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.75  E-value=0.00075  Score=54.72  Aligned_cols=87  Identities=20%  Similarity=0.219  Sum_probs=58.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eecCCHHHHHhccccCCCccEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      ..||.|+|+ |.||+.+++.+.. .+..-+-++.++.  +.+..++.   +++.  ..++++.+.+.      ++|+||-
T Consensus        24 ~~~ilviGa-G~~g~~v~~~L~~-~g~~~i~v~nRt~--~ka~~l~~---~~~~~~~~~~~~~~~l~------~~Divi~   90 (159)
T d1gpja2          24 DKTVLVVGA-GEMGKTVAKSLVD-RGVRAVLVANRTY--ERAVELAR---DLGGEAVRFDELVDHLA------RSDVVVS   90 (159)
T ss_dssp             TCEEEEESC-CHHHHHHHHHHHH-HCCSEEEEECSSH--HHHHHHHH---HHTCEECCGGGHHHHHH------TCSEEEE
T ss_pred             cCeEEEECC-CHHHHHHHHHHHh-cCCcEEEEEcCcH--HHHHHHHH---hhhcccccchhHHHHhc------cCCEEEE
Confidence            478999998 9999999999886 4665555666642  23333432   3333  33677888774      7999998


Q ss_pred             cCC-ch--hHHHHHHHHHHc---CCCeE
Q 022057          113 FTD-AS--TVYDNVKQATAF---GMRSV  134 (303)
Q Consensus       113 fT~-p~--a~~~~~~~al~~---g~~vV  134 (303)
                      +|. |+  -..++++..++.   ++|++
T Consensus        91 atss~~~ii~~~~i~~~~~~r~~~~~~~  118 (159)
T d1gpja2          91 ATAAPHPVIHVDDVREALRKRDRRSPIL  118 (159)
T ss_dssp             CCSSSSCCBCHHHHHHHHHHCSSCCCEE
T ss_pred             ecCCCCccccHhhhHHHHHhcccCCCeE
Confidence            874 43  347788777653   46654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.64  E-value=0.0014  Score=54.18  Aligned_cols=83  Identities=18%  Similarity=0.172  Sum_probs=53.0

Q ss_pred             eecccccccccceEEEeecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee
Q 022057           11 RMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV   90 (303)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v   90 (303)
                      |++...+|+|.+...-....|.-.-.+|+|+|+ |++|+.+++.+. .=++++.+ +|+..  .          +.....
T Consensus        18 ~i~~~~~~~~~~~w~~~~~~~~l~gk~vgIiG~-G~IG~~va~~l~-~~g~~v~~-~d~~~--~----------~~~~~~   82 (181)
T d1qp8a1          18 RIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGL-GEIGTRVGKILA-ALGAQVRG-FSRTP--K----------EGPWRF   82 (181)
T ss_dssp             THHHHHHHHHTTCCCCCSCCCCCTTCEEEEESC-STHHHHHHHHHH-HTTCEEEE-ECSSC--C----------CSSSCC
T ss_pred             CHHHHHHHHHcCCCCCCCCCCcccCceEEEecc-ccccccceeeee-cccccccc-ccccc--c----------ccceee
Confidence            344555667766532111112122468999998 999999999776 45888775 56542  1          112234


Q ss_pred             cCCHHHHHhccccCCCccEEEEcC
Q 022057           91 MSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        91 ~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ++++++++      ..+|+|+-..
T Consensus        83 ~~~l~ell------~~sDiv~~~~  100 (181)
T d1qp8a1          83 TNSLEEAL------REARAAVCAL  100 (181)
T ss_dssp             BSCSHHHH------TTCSEEEECC
T ss_pred             eechhhhh------hccchhhccc
Confidence            67899998      4899998654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.64  E-value=0.0079  Score=49.79  Aligned_cols=124  Identities=19%  Similarity=0.165  Sum_probs=71.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhhh-cCCCCCCeeecCCHHHHHhcc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMVC-DMEQPLEIPVMSDLTMVLGSI  101 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~~~~~-g~~~~~gv~v~~dl~~~l~~~  101 (303)
                      |||+|+|+ |.+|..++..++ ..+++++ ++|.+.             ......+.. ..........++|+++++.  
T Consensus         1 MkI~ViGl-G~vGl~~a~~la-~~g~~V~-g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~--   75 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLS-ARGHEVI-GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL--   75 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHH-HTTCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH--
T ss_pred             CEEEEECC-CHhHHHHHHHHH-hCCCcEE-EEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh--
Confidence            79999998 999999998777 5688987 577431             000111111 0001223456788888874  


Q ss_pred             ccCCCccEEEEcCC-c------------hhHHHHHHHHHHc---CCCeEEeCC---CCCHHHHHHHH-HHhhh---cCCe
Q 022057          102 SQSKARAVVIDFTD-A------------STVYDNVKQATAF---GMRSVVYVP---HIQLETVSALS-AFCDK---ASMG  158 (303)
Q Consensus       102 ~~~~~~DVvIDfT~-p------------~a~~~~~~~al~~---g~~vVigTT---G~~~e~~~~L~-~~a~~---~~i~  158 (303)
                          ++|+++-+-+ |            ..+.+.+...++.   +.-+|+.+|   |.+++....+. +....   .+..
T Consensus        76 ----~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~  151 (202)
T d1mv8a2          76 ----DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFG  151 (202)
T ss_dssp             ----TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBE
T ss_pred             ----hCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhcccccccccccc
Confidence                6898876542 2            1333334444442   334777766   67766544443 33211   2356


Q ss_pred             EEEcCCCcHH
Q 022057          159 CLIAPTLSIG  168 (303)
Q Consensus       159 vv~a~N~SiG  168 (303)
                      +.++|=|-.-
T Consensus       152 ~~~~PE~~~~  161 (202)
T d1mv8a2         152 VGTNPEFLRE  161 (202)
T ss_dssp             EEECCCCCCT
T ss_pred             chhhhhhhcc
Confidence            7788776543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0018  Score=53.88  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=27.4

Q ss_pred             Cc-eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           34 SN-IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        34 ~~-ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      || -||+|+|+ |.||+.|+..+. ..|++++ ++|++
T Consensus         2 ~~IkkvaViGa-G~mG~~iA~~~a-~~G~~V~-l~D~~   36 (192)
T d1f0ya2           2 IIVKHVTVIGG-GLMGAGIAQVAA-ATGHTVV-LVDQT   36 (192)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHH-HTTCEEE-EECSC
T ss_pred             ceeEEEEEECc-CHHHHHHHHHHH-hCCCcEE-EEECC
Confidence            54 48999998 999999998776 5789876 57754

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.0035  Score=45.70  Aligned_cols=31  Identities=26%  Similarity=0.268  Sum_probs=24.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      .||+|+|. |+.|+.+++.+.+ .+.++.+ +|.
T Consensus         6 K~v~ViGl-G~sG~s~a~~L~~-~g~~v~~-~D~   36 (93)
T d2jfga1           6 KNVVIIGL-GLTGLSCVDFFLA-RGVTPRV-MDT   36 (93)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHH-TTCCCEE-EES
T ss_pred             CEEEEEeE-CHHHHHHHHHHHH-CCCEEEE-eeC
Confidence            47999998 9999999998775 4776654 564

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=96.45  E-value=0.0084  Score=48.07  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=31.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~   69 (303)
                      |.||+|.|+||-+|+...+.+.+.|+ ++|++....
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~   37 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTAN   37 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEES
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeC
Confidence            47999999999999999999988764 999998764

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.33  E-value=0.0022  Score=54.33  Aligned_cols=59  Identities=25%  Similarity=0.399  Sum_probs=42.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      |||.|.|++|-+|+.+++.+. ..+.++++ +|+..  -|            +.-..+++++++.    .++|+||.+.
T Consensus         2 MKIlItGasGfiG~~l~~~L~-~~g~~Vi~-~~r~~--~D------------~~d~~~~~~~l~~----~~~d~vih~a   60 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLK-GKNVEVIP-TDVQD--LD------------ITNVLAVNKFFNE----KKPNVVINCA   60 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHT-TSSEEEEE-ECTTT--CC------------TTCHHHHHHHHHH----HCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHH-hCCCEEEE-eechh--cc------------CCCHHHHHHHHHH----cCCCEEEeec
Confidence            789999999999999999887 57899886 44432  11            1112345566653    4789999876

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0097  Score=45.15  Aligned_cols=41  Identities=27%  Similarity=0.426  Sum_probs=31.0

Q ss_pred             eecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        27 ~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      ++++..-...||+|+|+ |..||+++.+.. .=|+++. ++|+.
T Consensus         3 ~~~~~~~~~~kigIlGg-GQL~rMla~aA~-~lG~~v~-v~d~~   43 (111)
T d1kjqa2           3 LGTALRPAATRVMLLGS-GELGKEVAIECQ-RLGVEVI-AVDRY   43 (111)
T ss_dssp             BCCTTSTTCCEEEEESC-SHHHHHHHHHHH-TTTCEEE-EEESS
T ss_pred             cCCCCCCCCCEEEEEeC-CHHHHHHHHHHH-HCCCEEE-EEcCC
Confidence            44554444679999997 999999999766 4588885 57764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.24  E-value=0.0048  Score=45.68  Aligned_cols=90  Identities=9%  Similarity=0.076  Sum_probs=55.1

Q ss_pred             CCCCCceeEEEEcCCcHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCH-HHHHhccccCCCc
Q 022057           30 NPPQSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL-TMVLGSISQSKAR  107 (303)
Q Consensus        30 ~~~~~~ikV~V~G~~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl-~~~l~~~~~~~~~  107 (303)
                      ++.+.+.||=++|. |++|.. +|+.+. +.++++.| .|... ......+.    +.|++++... .+.+      .++
T Consensus         3 ~~~~~~~~ihfiGi-gG~GMs~LA~~L~-~~G~~VsG-SD~~~-~~~~~~L~----~~Gi~v~~g~~~~~i------~~~   68 (96)
T d1p3da1           3 PEMRRVQQIHFIGI-GGAGMSGIAEILL-NEGYQISG-SDIAD-GVVTQRLA----QAGAKIYIGHAEEHI------EGA   68 (96)
T ss_dssp             CCCTTCCEEEEETT-TSTTHHHHHHHHH-HHTCEEEE-EESCC-SHHHHHHH----HTTCEEEESCCGGGG------TTC
T ss_pred             ccchhCCEEEEEEE-CHHHHHHHHHHHH-hCCCEEEE-EeCCC-ChhhhHHH----HCCCeEEECCccccC------CCC
Confidence            45556789999998 999955 566554 67898886 57532 12223332    3566664322 2233      467


Q ss_pred             cEEEEcCC-chhHHHHHHHHHHcCCCeE
Q 022057          108 AVVIDFTD-ASTVYDNVKQATAFGMRSV  134 (303)
Q Consensus       108 DVvIDfT~-p~a~~~~~~~al~~g~~vV  134 (303)
                      |+||-.+. |+...+ +.+|.++|+|++
T Consensus        69 d~vV~S~AI~~~npe-l~~A~~~gipii   95 (96)
T d1p3da1          69 SVVVVSSAIKDDNPE-LVTSKQKRIPVI   95 (96)
T ss_dssp             SEEEECTTSCTTCHH-HHHHHHTTCCEE
T ss_pred             CEEEECCCcCCCCHH-HHHHHHcCCCEE
Confidence            87775443 444444 566888888876

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.14  E-value=0.0046  Score=49.23  Aligned_cols=70  Identities=16%  Similarity=0.170  Sum_probs=42.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecCC---CC--cchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~~---~g--~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (303)
                      .+||+|+|+ |.+|..++-.+...+-. ||+ .+|.+.   .|  .|....... .........|++++       .++|
T Consensus         5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elv-L~D~~~~~~~g~a~Dl~~a~~~-~~~~~~~~~d~~~~-------~~ad   74 (146)
T d1ez4a1           5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFV-IVDVVKDRTKGDALDLEDAQAF-TAPKKIYSGEYSDC-------KDAD   74 (146)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSHHHHHHHHHHHHGGGGG-SCCCEEEECCGGGG-------TTCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEE-EeecccchhHHHHHHHhccccc-cCCceEeeccHHHh-------cccc
Confidence            479999997 99999999988876543 554 578542   01  111111111 12223345677665       4789


Q ss_pred             EEEEcC
Q 022057          109 VVIDFT  114 (303)
Q Consensus       109 VvIDfT  114 (303)
                      +||-.+
T Consensus        75 ivvita   80 (146)
T d1ez4a1          75 LVVITA   80 (146)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            888653

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.06  E-value=0.013  Score=51.80  Aligned_cols=34  Identities=26%  Similarity=0.242  Sum_probs=28.5

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      +.|||.|.|++|-+|+.+++.+.+ .+.++++ +|.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~-~g~~V~~-~d~   47 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKH-EGHYVIA-SDW   47 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CcCEEEE-EeC
Confidence            358999999999999999999885 5788886 453

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.06  E-value=0.05  Score=43.21  Aligned_cols=75  Identities=19%  Similarity=0.135  Sum_probs=45.4

Q ss_pred             CCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC---C--cchhhhh-cCCCCCCeeecCCHHHHHhccccCC
Q 022057           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---G--EDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSK  105 (303)
Q Consensus        32 ~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~---g--~d~~~~~-g~~~~~gv~v~~dl~~~l~~~~~~~  105 (303)
                      .+.+.||+|+|+ |++|+.++-.+...+=.||+ .+|.+..   |  .|..... -......+...+++++.+      .
T Consensus         4 ~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~-L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~------~   75 (154)
T d1pzga1           4 VQRRKKVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAAL------T   75 (154)
T ss_dssp             CSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEE-EECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHH------T
T ss_pred             ccCCCcEEEECC-CHHHHHHHHHHHhCCCceEE-EEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhh------c
Confidence            345689999998 99999999877766645866 7885421   1  1111110 001122333456777777      4


Q ss_pred             CccEEEEcC
Q 022057          106 ARAVVIDFT  114 (303)
Q Consensus       106 ~~DVvIDfT  114 (303)
                      ++|+||...
T Consensus        76 ~adiVvita   84 (154)
T d1pzga1          76 GADCVIVTA   84 (154)
T ss_dssp             TCSEEEECC
T ss_pred             CCCeEEEec
Confidence            789888543

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.99  E-value=0.0057  Score=48.15  Aligned_cols=33  Identities=18%  Similarity=0.370  Sum_probs=26.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (303)
                      |||+|+|+ |++|..++-.+...+-. ||+ .+|.+
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~-L~Di~   34 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELV-LLDVV   34 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEE-Eeccc
Confidence            79999998 99999999888866533 555 68854

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.98  E-value=0.036  Score=43.78  Aligned_cols=34  Identities=29%  Similarity=0.420  Sum_probs=26.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (303)
                      |||+|+|++|++|+.++-.+...+-+ ||+ .+|.+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~-L~D~~   35 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLV-LIGRE   35 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEE-EEECG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccc-cccch
Confidence            69999998899999999988866543 554 67753

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.021  Score=47.57  Aligned_cols=94  Identities=18%  Similarity=0.106  Sum_probs=53.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCeee--cCCHHHHHhccccCCCccEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      +.||.|.|+||-+|+.+++.+.++..+ ++.++..++. ..+....    ......+  +.+++++.+.+   .++|++|
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~-~~~~~~~----~~i~~~~~D~~~~~~~~~~~---~~~d~vi   85 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL-TFDEEAY----KNVNQEVVDFEKLDDYASAF---QGHDVGF   85 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC-CCCSGGG----GGCEEEECCGGGGGGGGGGG---SSCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh-hhccccc----ceeeeeeecccccccccccc---ccccccc
Confidence            368999999999999999999887664 6766543221 1111110    0111111  22333333221   5789998


Q ss_pred             EcCCc---------------hhHHHHHHHHHHcCCCeEEe
Q 022057          112 DFTDA---------------STVYDNVKQATAFGMRSVVY  136 (303)
Q Consensus       112 DfT~p---------------~a~~~~~~~al~~g~~vVig  136 (303)
                      .+...               +.....++.|.+.|+.-++-
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~  125 (232)
T d2bkaa1          86 CCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNL  125 (232)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEE
T ss_pred             ccccccccccchhhhhhhcccccceeeecccccCcccccc
Confidence            75421               12245667778888774433

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0093  Score=52.23  Aligned_cols=90  Identities=18%  Similarity=0.201  Sum_probs=54.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-------eecCCHHHHHhccccCCCcc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-------PVMSDLTMVLGSISQSKARA  108 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-------~v~~dl~~~l~~~~~~~~~D  108 (303)
                      |||.|.|++|-+|+.+++.+.++...++.+ +|...  .....+..   ...+       ....++.+.+.     .++|
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~-ld~~~--~~~~~~~~---~~~~~~i~~Di~~~~~~~~~~~-----~~~d   69 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYG-LDIGS--DAISRFLN---HPHFHFVEGDISIHSEWIEYHV-----KKCD   69 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEE-EESCC--GGGGGGTT---CTTEEEEECCTTTCSHHHHHHH-----HHCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEE-EeCCC--cchhhhcc---CCCeEEEECccCChHHHHHHHH-----hCCC
Confidence            599999999999999999998776678776 45421  11111111   1112       11223333222     3799


Q ss_pred             EEEEcCCch------------------hHHHHHHHHHHcCCCeEEe
Q 022057          109 VVIDFTDAS------------------TVYDNVKQATAFGMRSVVY  136 (303)
Q Consensus       109 VvIDfT~p~------------------a~~~~~~~al~~g~~vVig  136 (303)
                      +||.+....                  .....+..|.+.++..++-
T Consensus        70 ~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~  115 (342)
T d2blla1          70 VVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFP  115 (342)
T ss_dssp             EEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccccccccccccccccCCcccccccccccccccccccccccccccc
Confidence            999876421                  1344667778888876663

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=95.76  E-value=0.0033  Score=53.39  Aligned_cols=62  Identities=11%  Similarity=0.208  Sum_probs=37.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      |||.|.|++|-+|+.+++.+.+ .+ +++++ +...  .   .+     ..++.-...+++++..    .+||+||.+.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~-~g-~~v~~-~~~~--~---~~-----~~Dl~~~~~~~~~i~~----~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAP-VG-NLIAL-DVHS--K---EF-----CGDFSNPKGVAETVRK----LRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTT-TS-EEEEE-CTTC--S---SS-----CCCTTCHHHHHHHHHH----HCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHh-CC-CEEEE-ECCC--c---cc-----cCcCCCHHHHHHHHHH----cCCCEEEEec
Confidence            6899999999999999998764 33 44443 3221  0   00     0111112234555543    4789999975

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.022  Score=45.58  Aligned_cols=98  Identities=14%  Similarity=0.066  Sum_probs=60.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEEecCCCC---cchhhh----------------hc-C-CCCCCeeecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVG---EDIGMV----------------CD-M-EQPLEIPVMS   92 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g---~d~~~~----------------~g-~-~~~~gv~v~~   92 (303)
                      |.||.|.|+||.+|+...+.+.+.| .+++++........   +.+.++                .. + ....++.++.
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~   80 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLS   80 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhcccccccc
Confidence            5689999999999999999999887 48999987632110   000000                00 0 0122344432


Q ss_pred             ---CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHHHcCCCeEEe
Q 022057           93 ---DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (303)
Q Consensus        93 ---dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al~~g~~vVig  136 (303)
                         ++.++..    ..++|+||-.-.-.+..+-...++++|+.+-+.
T Consensus        81 g~~~l~~~~~----~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaLA  123 (151)
T d1q0qa2          81 GQQAACDMAA----LEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLA  123 (151)
T ss_dssp             SHHHHHHHHT----CTTCCEEEECCSSGGGHHHHHHHHHTTCEEEEC
T ss_pred             ChHHHHHHhc----CCCCCEEEEecCcccHHHHHHHHHhcCCeEEEE
Confidence               2333333    246787776666666677777777777776654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.65  E-value=0.02  Score=47.93  Aligned_cols=33  Identities=24%  Similarity=0.259  Sum_probs=28.5

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      ++.||.|.|+||.+|+.+++.+.+ .+.++.++.
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~-~G~~V~~l~   34 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLD-LGHPTFLLV   34 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHH-TTCCEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCeEEEEE
Confidence            468999999999999999999985 578888755

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=95.61  E-value=0.013  Score=52.44  Aligned_cols=33  Identities=30%  Similarity=0.432  Sum_probs=28.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      |||.|.|++|-+|+.+++.+.+. +.+++..+|.
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~-g~~vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKN-TQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHH-CSCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CCCEEEEEeC
Confidence            59999999999999999999854 6677778885

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.59  E-value=0.037  Score=42.00  Aligned_cols=120  Identities=14%  Similarity=0.150  Sum_probs=63.4

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cC------CHHHHHhccccCCCccE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS------DLTMVLGSISQSKARAV  109 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~------dl~~~l~~~~~~~~~DV  109 (303)
                      |+.|+|+ |++|+.+++.+.+ .+.+++. +|.+.  +.+.++.    ..+..+ +.      .++++-     -.++|.
T Consensus         2 ~~iIiG~-G~~G~~la~~L~~-~g~~vvv-id~d~--~~~~~~~----~~~~~~~~gd~~~~~~l~~a~-----i~~a~~   67 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKELHR-MGHEVLA-VDINE--EKVNAYA----SYATHAVIANATEENELLSLG-----IRNFEY   67 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHHHH-TTCCCEE-EESCH--HHHHHTT----TTCSEEEECCTTCTTHHHHHT-----GGGCSE
T ss_pred             EEEEECC-CHHHHHHHHHHHH-CCCeEEE-ecCcH--HHHHHHH----HhCCcceeeecccchhhhccC-----CccccE
Confidence            6899998 9999999999874 5777764 66532  1112221    122211 11      222221     136787


Q ss_pred             EEEcCC-chhH-HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHH
Q 022057          110 VIDFTD-ASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (303)
Q Consensus       110 vIDfT~-p~a~-~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~  175 (303)
                      +|-.++ .+.. .-....+...+.+-++..+ -+++..+.|+    +.|+..++.|-.-.|..|...+
T Consensus        68 vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~-~~~~~~~~l~----~~Gad~vi~p~~~~a~~la~~l  130 (134)
T d2hmva1          68 VIVAIGANIQASTLTTLLLKELDIPNIWVKA-QNYYHHKVLE----KIGADRIIHPEKDMGVKIAQSL  130 (134)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHTTCSEEEEEC-CSHHHHHHHH----HHTCSEEECHHHHHHHHHHHHH
T ss_pred             EEEEcCchHHhHHHHHHHHHHcCCCcEEeec-ccHhHHHHHH----HCCCCEEEChHHHHHHHHHHHH
Confidence            664443 2222 2223334455655555433 3344444443    3467778888777776554443

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.57  E-value=0.0074  Score=47.74  Aligned_cols=69  Identities=19%  Similarity=0.315  Sum_probs=41.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecCC---CC--cchhhhh-cCCCCCCeeecCCHHHHHhccccCCCcc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---VG--EDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSKARA  108 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~~---~g--~d~~~~~-g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (303)
                      |||+|+|+ |++|..++-.+..++-+ ||+ .+|.+.   .|  .|+.... .......+...+|++++       .++|
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elv-L~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~-------~~ad   71 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIA-LVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLL-------KGSE   71 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEE-EECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGG-------TTCS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEE-EEecccchhhHHHHHHhhhccccCCCCccccCCCHHHh-------cccc
Confidence            79999998 99999999988866654 555 578532   11  1111111 11112234445677655       4789


Q ss_pred             EEEEc
Q 022057          109 VVIDF  113 (303)
Q Consensus       109 VvIDf  113 (303)
                      +||-.
T Consensus        72 iVvit   76 (142)
T d1ojua1          72 IIVVT   76 (142)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            88743

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.47  E-value=0.0046  Score=50.22  Aligned_cols=99  Identities=14%  Similarity=0.089  Sum_probs=55.3

Q ss_pred             CCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee--e---cCCHHHHHhccccC
Q 022057           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--V---MSDLTMVLGSISQS  104 (303)
Q Consensus        30 ~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~--v---~~dl~~~l~~~~~~  104 (303)
                      +|.+   +|+|+|+ |.+|...++.+. .-+.+-+-++|++.  .. .+++   .++|..  +   ..++.+.+.++...
T Consensus        26 ~~g~---~VlI~Ga-G~vGl~~~q~ak-~~Ga~~Vi~~d~~~--~r-~~~a---~~lGa~~~i~~~~~~~~~~v~~~t~g   94 (174)
T d1jqba2          26 EMGS---SVVVIGI-GAVGLMGIAGAK-LRGAGRIIGVGSRP--IC-VEAA---KFYGATDILNYKNGHIEDQVMKLTNG   94 (174)
T ss_dssp             CTTC---CEEEECC-SHHHHHHHHHHH-TTTCSCEEEECCCH--HH-HHHH---HHHTCSEEECGGGSCHHHHHHHHTTT
T ss_pred             CCCC---EEEEEcC-Ccchhhhhhhhh-cccccccccccchh--hh-HHHH---HhhCccccccccchhHHHHHHHHhhc
Confidence            4544   5999998 999999998776 56765455677542  11 1111   122221  1   12333333222122


Q ss_pred             CCccEEEEcCC-chhHHHHHHHHHHcCCCeEEeCCC
Q 022057          105 KARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPH  139 (303)
Q Consensus       105 ~~~DVvIDfT~-p~a~~~~~~~al~~g~~vVigTTG  139 (303)
                      ..+|++||++. ++.....+..+...|.-+++|.++
T Consensus        95 ~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~  130 (174)
T d1jqba2          95 KGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHG  130 (174)
T ss_dssp             SCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             cCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecC
Confidence            34888888884 444455555555666666777654

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.023  Score=49.82  Aligned_cols=30  Identities=20%  Similarity=0.412  Sum_probs=26.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~   66 (303)
                      |||.|+|++|-+|+.+++.+.+. +.+++++
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~-g~~V~~~   30 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIIL   30 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-cCEEEEE
Confidence            68999999999999999999864 7898874

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.0045  Score=49.27  Aligned_cols=35  Identities=23%  Similarity=0.250  Sum_probs=25.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd~~   70 (303)
                      |||+|+|++|++|+.++-.+..+ +-..-+..+|..
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            79999997799999998876543 433334467754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.019  Score=45.95  Aligned_cols=95  Identities=16%  Similarity=0.177  Sum_probs=52.9

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-ee--c--CCHHHHHhccccCCCccEEE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PV--M--SDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v--~--~dl~~~l~~~~~~~~~DVvI  111 (303)
                      +|.|+|++|.+|...++.+. .-++++++..+++.   . .+++   .++|. .+  +  .|+.+.+.+......+|+++
T Consensus        31 ~VlV~Ga~G~vG~~aiq~a~-~~G~~vi~~~~~~~---~-~~~~---~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~  102 (174)
T d1yb5a2          31 SVLVHGASGGVGLAACQIAR-AYGLKILGTAGTEE---G-QKIV---LQNGAHEVFNHREVNYIDKIKKYVGEKGIDIII  102 (174)
T ss_dssp             EEEEETCSSHHHHHHHHHHH-HTTCEEEEEESSHH---H-HHHH---HHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred             EEEEEecccccccccccccc-ccCccccccccccc---c-cccc---cccCcccccccccccHHHHhhhhhccCCceEEe
Confidence            69999988999999998665 56899988776431   1 1111   12222 11  2  23333332111224578888


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCCC
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVPH  139 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTTG  139 (303)
                      |++..+.....+......|.=+++|..+
T Consensus       103 d~~g~~~~~~~~~~l~~~G~iv~~G~~~  130 (174)
T d1yb5a2         103 EMLANVNLSKDLSLLSHGGRVIVVGSRG  130 (174)
T ss_dssp             ESCHHHHHHHHHHHEEEEEEEEECCCCS
T ss_pred             ecccHHHHHHHHhccCCCCEEEEEecCC
Confidence            8776544444344444455555566553

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.30  E-value=0.03  Score=47.32  Aligned_cols=33  Identities=24%  Similarity=0.234  Sum_probs=28.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      +.||.|.|+||.+|+.+++.+.+ .+++++++..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~-~G~~V~~~~R   35 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASIS-LGHPTYVLFR   35 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHH-TTCCEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-CCCEEEEEEC
Confidence            67999999999999999999886 5788887654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.022  Score=49.61  Aligned_cols=30  Identities=20%  Similarity=0.287  Sum_probs=26.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~   66 (303)
                      .||.|.|++|-+|+.+++.+.+ .+.+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~-~g~~V~~~   31 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMM-DGHEVTVV   31 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CcCEEEEE
Confidence            5899999999999999999975 58998875

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.13  E-value=0.022  Score=41.51  Aligned_cols=84  Identities=17%  Similarity=0.191  Sum_probs=52.7

Q ss_pred             eeEEEEcCCcHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCH-HHHHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL-TMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl-~~~l~~~~~~~~~DVvIDf  113 (303)
                      |||=++|. |++|.. +++. ..+.++++.| .|... ......+    .+.|++++... .+.+      .++|+||-.
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~-L~~~G~~VsG-SD~~~-~~~t~~L----~~~Gi~i~~gh~~~~i------~~~d~vV~S   67 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALH-EFSNGNDVYG-SNIEE-TERTAYL----RKLGIPIFVPHSADNW------YDPDLVIKT   67 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHH-HHHTTCEEEE-ECSSC-CHHHHHH----HHTTCCEESSCCTTSC------CCCSEEEEC
T ss_pred             cEEEEEeE-CHHHHHHHHHH-HHhCCCeEEE-EeCCC-ChhHHHH----HHCCCeEEeeeccccc------CCCCEEEEe
Confidence            68999998 999975 6664 5578998876 56532 1222222    35677775321 2223      468888755


Q ss_pred             CC-chhHHHHHHHHHHcCCCeE
Q 022057          114 TD-ASTVYDNVKQATAFGMRSV  134 (303)
Q Consensus       114 T~-p~a~~~~~~~al~~g~~vV  134 (303)
                      +. |+. .+-+.+|.+.|+|+.
T Consensus        68 sAI~~~-npel~~A~~~gIpv~   88 (89)
T d1j6ua1          68 PAVRDD-NPEIVRARMERVPIE   88 (89)
T ss_dssp             TTCCTT-CHHHHHHHHTTCCEE
T ss_pred             cCcCCC-CHHHHHHHHcCCCcc
Confidence            53 333 444778889999875

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.031  Score=47.25  Aligned_cols=33  Identities=24%  Similarity=0.303  Sum_probs=26.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      .-||.|+|+ |.+|..++..+.. -|+.=..++|.
T Consensus        30 ~~~VliiG~-GglGs~va~~La~-~Gvg~i~lvD~   62 (247)
T d1jw9b_          30 DSRVLIVGL-GGLGCAASQYLAS-AGVGNLTLLDF   62 (247)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHH-HTCSEEEEECC
T ss_pred             CCCEEEECC-CHHHHHHHHHHHH-cCCCeEEEECC
Confidence            368999998 9999999998874 56666667774

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.95  E-value=0.012  Score=46.55  Aligned_cols=71  Identities=15%  Similarity=0.146  Sum_probs=42.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecCC---CC--cchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~~---~g--~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (303)
                      |-||+|+|+ |++|..++-.+..+.-+ ||+ .+|.+.   .|  .|+...........+...++++++       .++|
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~Elv-L~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~-------~daD   71 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIV-LEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEIC-------RDAD   71 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGG-------TTCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEE-EEEeccccchhHHHHHHhccccCCCceeecCCCHHHh-------hCCc
Confidence            369999998 99999999888765543 665 588532   01  112111111012233345677654       4789


Q ss_pred             EEEEcC
Q 022057          109 VVIDFT  114 (303)
Q Consensus       109 VvIDfT  114 (303)
                      +||-..
T Consensus        72 vVVita   77 (143)
T d1llda1          72 MVVITA   77 (143)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            988654

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.95  E-value=0.019  Score=46.18  Aligned_cols=51  Identities=18%  Similarity=0.233  Sum_probs=35.7

Q ss_pred             cccceEEEeecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           19 VKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        19 ~~~~~~~~~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      +|.+.+-....+..-.+.||+|+|+ |++|..++-.+...+-..=+..+|.+
T Consensus         3 ~~~~l~~~~~~~~~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1           3 VKEQLIQNLVPEDKLSRCKITVVGV-GDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             HHHHHEEECSSCCCCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             HHHHHHhhhcccccCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            3455555555555444579999998 99999999988876655334467854

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.046  Score=43.29  Aligned_cols=130  Identities=12%  Similarity=0.030  Sum_probs=65.7

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC-
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD-  115 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~-  115 (303)
                      +|.|+|+ |.+|...++.+. .-+.+.++ ++....-.+...-.|.   -.+..+.+.+.....   ...+|++||++. 
T Consensus        33 ~VlI~Ga-G~vG~~a~qlak-~~Ga~~i~-~~~~~~~~~~a~~lGa---d~~i~~~~~~~~~~~---~~~~D~vid~~g~  103 (168)
T d1uufa2          33 KVGVVGI-GGLGHMGIKLAH-AMGAHVVA-FTTSEAKREAAKALGA---DEVVNSRNADEMAAH---LKSFDFILNTVAA  103 (168)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCEEEE-EESSGGGHHHHHHHTC---SEEEETTCHHHHHTT---TTCEEEEEECCSS
T ss_pred             EEEEecc-chHHHHHHHHhh-cccccchh-hccchhHHHHHhccCC---cEEEECchhhHHHHh---cCCCceeeeeeec
Confidence            6999998 999999998766 56888885 5543211111111111   112223333333221   246899999985 


Q ss_pred             chhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHh
Q 022057          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~  179 (303)
                      +......+..+...|.=+++|.++-..... ....+.. +++.+.-+.+.+.  .-+.++.+.+
T Consensus       104 ~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~-~~~~l~~-k~~~i~Gs~~~~~--~d~~e~l~l~  163 (168)
T d1uufa2         104 PHNLDDFTTLLKRDGTMTLVGAPATPHKSP-EVFNLIM-KRRAIAGSMIGGI--PETQEMLDFC  163 (168)
T ss_dssp             CCCHHHHHTTEEEEEEEEECCCC--------CHHHHHT-TTCEEEECCSCCH--HHHHHHHHHH
T ss_pred             chhHHHHHHHHhcCCEEEEeccCCCCcccc-cHHHHHH-CCcEEEEEeecCH--HHHHHHHHHH
Confidence            444555555444556666666553222111 2222222 2367665555543  2344444433

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=94.88  E-value=0.021  Score=47.32  Aligned_cols=63  Identities=21%  Similarity=0.166  Sum_probs=44.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .+|+|+|+ |++|+.+++.+. .=++++.+ +|+... .+...      ..++....++++++.      .+|+|+-..
T Consensus        50 ktvgIiG~-G~IG~~va~~l~-~fg~~v~~-~d~~~~-~~~~~------~~~~~~~~~l~~ll~------~sD~i~~~~  112 (193)
T d1mx3a1          50 ETLGIIGL-GRVGQAVALRAK-AFGFNVLF-YDPYLS-DGVER------ALGLQRVSTLQDLLF------HSDCVTLHC  112 (193)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-TTTCEEEE-ECTTSC-TTHHH------HHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             ceEEEecc-ccccccceeeee-ccccceee-ccCccc-ccchh------hhccccccchhhccc------cCCEEEEee
Confidence            58999998 999999999876 45899875 565321 11111      234555778999995      689988654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.81  E-value=0.015  Score=47.15  Aligned_cols=94  Identities=16%  Similarity=0.137  Sum_probs=53.6

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-c-----C-CHHHHHhccccCCCccE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M-----S-DLTMVLGSISQSKARAV  109 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~-----~-dl~~~l~~~~~~~~~DV  109 (303)
                      .|.|+|+ |.+|...+..+. .-+..-+.+.|++..  . .+++   +++|... +     + ..+..... .....+|+
T Consensus        31 ~VlV~G~-G~iGl~a~~~ak-~~Ga~~Vi~~d~~~~--r-~~~a---~~~Ga~~~i~~~~~~~~~~~~~~~-~~~~G~d~  101 (174)
T d1e3ia2          31 TCAVFGL-GCVGLSAIIGCK-IAGASRIIAIDINGE--K-FPKA---KALGATDCLNPRELDKPVQDVITE-LTAGGVDY  101 (174)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCSEEEEECSCGG--G-HHHH---HHTTCSEEECGGGCSSCHHHHHHH-HHTSCBSE
T ss_pred             EEEEECC-ChHHHHHHHHHH-HhCCceeeeeccchH--H-HHHH---HHhCCCcccCCccchhhhhhhHhh-hhcCCCcE
Confidence            6999998 999999998766 457766666776421  1 1222   1233211 1     1 12222110 01246899


Q ss_pred             EEEcCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          110 VIDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      +||++-.+...+....+++.  |.-+++|.++
T Consensus       102 vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~  133 (174)
T d1e3ia2         102 SLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV  133 (174)
T ss_dssp             EEESSCCHHHHHHHHHTBCTTTCEEEECCCSS
T ss_pred             EEEecccchHHHHHHHHhhcCCeEEEecCCCC
Confidence            99988655555555555433  6777777653

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.68  E-value=0.014  Score=45.68  Aligned_cols=33  Identities=15%  Similarity=0.347  Sum_probs=26.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      |||+|+|.+|.||+.+++.+. ..+++++- ++++
T Consensus         1 Mki~vigGaG~iG~alA~~la-~~G~~V~l-~~R~   33 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLA-TLGHEIVV-GSRR   33 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TTTCEEEE-EESS
T ss_pred             CEEEEEeCCcHHHHHHHHHHH-HCCCEEEE-EECC
Confidence            689999656999999999888 56888774 4554

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=94.66  E-value=0.038  Score=47.44  Aligned_cols=61  Identities=15%  Similarity=0.093  Sum_probs=39.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      +.||.|.|++|-+|+.+++.+.+. +.+++. ++...             +.++.-..++++++..    ..+|+++...
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~-g~~vi~-~~~~~-------------~~~~~~~~~~~~~~~~----~~~d~v~~~a   62 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQR-GDVELV-LRTRD-------------ELNLLDSRAVHDFFAS----ERIDQVYLAA   62 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTC-TTEEEE-CCCTT-------------TCCTTCHHHHHHHHHH----HCCSEEEECC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHC-cCEEEE-ecCch-------------hccccCHHHHHHHHhh----cCCCEEEEcc
Confidence            569999999999999999999865 455543 33211             1111222344555543    5789988653

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.54  E-value=0.03  Score=44.17  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=26.8

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      ||+|+||+|++|+.++-.+...+-+.=+..+|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            8999998899999999988876654444467864

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.50  E-value=0.01  Score=47.91  Aligned_cols=33  Identities=15%  Similarity=0.254  Sum_probs=26.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC-CcEEEEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAI   67 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~-~~eLvg~v   67 (303)
                      |.+|.|.|++|.+|+.+++.+.+.. .+.+++..
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~   36 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLV   36 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEc
Confidence            5799999999999999999998643 35555543

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.38  E-value=0.023  Score=44.66  Aligned_cols=68  Identities=13%  Similarity=0.104  Sum_probs=42.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCC---C--cchh---hhhcCCCCCCeeecCCHHHHHhccccCCCc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---G--EDIG---MVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~---g--~d~~---~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (303)
                      -||+|+|+ |++|..++-.+...+-.+|+ .+|....   |  .|..   .+.+  ....+...+|++++       .++
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~-l~D~~~~~~~~~~~Dl~~~~~~~~--~~~~i~~~~d~~~~-------~~a   70 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIV-LLDIVEGVPQGKALDLYEASPIEG--FDVRVTGTNNYADT-------ANS   70 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEE-EECSSSSHHHHHHHHHHTTHHHHT--CCCCEEEESCGGGG-------TTC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEE-EEeeccccchhHHHHhhccccccC--CCCEEEecCcHHHh-------cCC
Confidence            48999998 99999999888776656855 4785321   1  1111   1111  12234445777776       478


Q ss_pred             cEEEEcC
Q 022057          108 AVVIDFT  114 (303)
Q Consensus       108 DVvIDfT  114 (303)
                      |++|...
T Consensus        71 dvvvita   77 (142)
T d1uxja1          71 DVIVVTS   77 (142)
T ss_dssp             SEEEECC
T ss_pred             CEEEEee
Confidence            9888654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.36  E-value=0.049  Score=44.22  Aligned_cols=31  Identities=16%  Similarity=0.242  Sum_probs=26.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAG   65 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg   65 (303)
                      +.||.|.|+||-+|+.+++.+.++++. ++..
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~   33 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIA   33 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEE
Confidence            469999999999999999999887775 4443

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=94.31  E-value=0.044  Score=46.95  Aligned_cols=30  Identities=20%  Similarity=0.376  Sum_probs=26.6

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      ||.|.|++|-+|+.+++.+.+ .+.++++ +|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~-~g~~V~~-id   31 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALS-QGIDLIV-FD   31 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEE-EE
T ss_pred             EEEEECCCcHHHHHHHHHHHH-CcCEEEE-EE
Confidence            899999999999999999886 4899988 55

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.24  E-value=0.012  Score=46.30  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=25.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (303)
                      |||+|+|+ |++|..++-.+...+-. ||+ .+|.+
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~-L~Di~   34 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMV-LIDVD   34 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEE-EEecc
Confidence            79999998 99999999877766543 554 67753

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.19  E-value=0.23  Score=41.94  Aligned_cols=117  Identities=15%  Similarity=0.189  Sum_probs=73.9

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCC-------CCCeeecCCHHHHHhccc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ-------PLEIPVMSDLTMVLGSIS  102 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~~-------~~gv~v~~dl~~~l~~~~  102 (303)
                      ..||+|-|+ |++|+.+++.+.++-+..++++.|+.     ..|-|..++.....       ..+.. +-+.++++.   
T Consensus        31 g~~vaIqG~-GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~---  105 (234)
T d1b26a1          31 KATVAVQGF-GNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGE-RITNEELLE---  105 (234)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCE-EECHHHHHT---
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccce-eeccccccc---
Confidence            468999997 99999999988766699999998852     33555543321100       01111 235677875   


Q ss_pred             cCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI  167 (303)
Q Consensus       103 ~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G-~~~e~~~~L~~~a~~~~i~vv~a~N~Si  167 (303)
                        .++||++=+...... .+++.   +-...+|+|-. + ++++. ++  .+ .++|  +++.|-|-.
T Consensus       106 --~~~DI~~PcA~~~~I~~~~a~---~l~~~~I~e~AN~p~t~~a-~~--~L-~~rg--I~~~PD~~a  162 (234)
T d1b26a1         106 --LDVDILVPAALEGAIHAGNAE---RIKAKAVVEGANGPTTPEA-DE--IL-SRRG--ILVVPDILA  162 (234)
T ss_dssp             --SCCSEEEECSCTTCBCHHHHT---TCCCSEEECCSSSCBCHHH-HH--HH-HHTT--CEEECHHHH
T ss_pred             --cccceeecchhcccccHHHHH---HhhhceEeecCCCCCCHHH-HH--HH-HHCC--eEEechHHh
Confidence              589999987766555 44444   55678999876 3 55543 22  23 3444  567777643

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.17  E-value=0.029  Score=45.13  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=26.6

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      +|.|.|++|.+|+..++... .-+.++++...+
T Consensus        32 ~VlV~ga~ggvG~~aiqlak-~~Ga~vi~~~~~   63 (182)
T d1v3va2          32 TVLVSAAAGAVGSVVGQIAK-LKGCKVVGAAGS   63 (182)
T ss_dssp             EEEESSTTSHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             EEEEEeCCCchhHHHHHHHH-ccCCEEEEeCCC
Confidence            58899999999999998655 678999987754

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.17  E-value=0.037  Score=44.45  Aligned_cols=134  Identities=13%  Similarity=0.044  Sum_probs=65.6

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee----e-cCCHHHHHh---ccccCCCcc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP----V-MSDLTMVLG---SISQSKARA  108 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~----v-~~dl~~~l~---~~~~~~~~D  108 (303)
                      +|.|+|+ |.+|...++.+. .-+.+-|-++|++.  .. -+++   .++|..    . ..+..+..+   +......+|
T Consensus        31 ~VlV~Ga-G~iG~~~~~~ak-~~Ga~~Vi~~~~~~--~~-~~~a---~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~D  102 (182)
T d1vj0a2          31 TVVIQGA-GPLGLFGVVIAR-SLGAENVIVIAGSP--NR-LKLA---EEIGADLTLNRRETSVEERRKAIMDITHGRGAD  102 (182)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTBSEEEEEESCH--HH-HHHH---HHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred             EEEEECC-Cccchhheeccc-cccccccccccccc--cc-cccc---ccccceEEEeccccchHHHHHHHHHhhCCCCce
Confidence            6899998 999999998766 56774333455431  11 1122   122221    1 123322211   111123589


Q ss_pred             EEEEcCCchhHHHHH-HHHHHcCCCeEEeCCCCC-HHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhcc
Q 022057          109 VVIDFTDASTVYDNV-KQATAFGMRSVVYVPHIQ-LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF  181 (303)
Q Consensus       109 VvIDfT~p~a~~~~~-~~al~~g~~vVigTTG~~-~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~  181 (303)
                      +|||++......+.. ..+...|+=+++|.++-. +-.......+.. +++.+.-+-+++..-  +.++.+.+.+
T Consensus       103 vvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~-k~l~i~G~~~~~~~~--~~~~~~~i~~  174 (182)
T d1vj0a2         103 FILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVL-KNATFKGIWVSDTSH--FVKTVSITSR  174 (182)
T ss_dssp             EEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTT-TTCEEEECCCCCHHH--HHHHHHHHHT
T ss_pred             EEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCCccccccHHHHHH-CCcEEEEEEeCCHHH--HHHHHHHHHH
Confidence            999988544444444 444444455566644211 111111222232 347777666666543  4455544443

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.13  E-value=0.051  Score=43.23  Aligned_cols=150  Identities=15%  Similarity=0.098  Sum_probs=74.8

Q ss_pred             ccccceeeeeecccc---cccccceEEEeecCCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhh
Q 022057            2 ATLGCQFHCRMHHIS---QNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGM   78 (303)
Q Consensus         2 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~   78 (303)
                      |+|.|.+.+-.|-..   +++          +|.+   .|.|+|+ |.+|...++.+... +...+.++|++.  .. -+
T Consensus        10 A~l~~~~~Ta~~al~~~~~~~----------~~g~---~vli~Ga-G~vG~~~~~~a~~~-g~~~vv~~~~~~--~k-~~   71 (172)
T d1h2ba2          10 APLADAGITAYRAVKKAARTL----------YPGA---YVAIVGV-GGLGHIAVQLLKVM-TPATVIALDVKE--EK-LK   71 (172)
T ss_dssp             GGGGTHHHHHHHHHHHHHTTC----------CTTC---EEEEECC-SHHHHHHHHHHHHH-CCCEEEEEESSH--HH-HH
T ss_pred             hHHHhHHHHHHHHHHHhhhcc----------CCCC---EEEEeCC-ChHHHHHHHHHHhh-cCcccccccchh--HH-HH
Confidence            678887654433322   223          3433   5899998 99999999877644 444455666532  11 11


Q ss_pred             hhcCCCCCCe----eecC-CHHHHHhccccCCCccEEEEcCCchhHHHHHHHHH-HcCCCeEEeCCCCCHHHHHHHHHHh
Q 022057           79 VCDMEQPLEI----PVMS-DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQAT-AFGMRSVVYVPHIQLETVSALSAFC  152 (303)
Q Consensus        79 ~~g~~~~~gv----~v~~-dl~~~l~~~~~~~~~DVvIDfT~p~a~~~~~~~al-~~g~~vVigTTG~~~e~~~~L~~~a  152 (303)
                      ++   .+++.    ...+ ++++.++. .....+|++||++......+....++ ..|.-+++|-++-.  .+....-..
T Consensus        72 ~~---~~~ga~~~i~~~~~~~~~~~~~-~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~--~~~~~~l~~  145 (172)
T d1h2ba2          72 LA---ERLGADHVVDARRDPVKQVMEL-TRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGGEL--RFPTIRVIS  145 (172)
T ss_dssp             HH---HHTTCSEEEETTSCHHHHHHHH-TTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCSSCC--CCCHHHHHH
T ss_pred             HH---hhcccceeecCcccHHHHHHHh-hCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCcccc--cCCHHHHHh
Confidence            11   11221    1112 23333321 11235899999997665555544444 45555556643211  111111123


Q ss_pred             hhcCCeEEEcCCCcHHHHHHHHHHHHh
Q 022057          153 DKASMGCLIAPTLSIGSILLQQAAISA  179 (303)
Q Consensus       153 ~~~~i~vv~a~N~SiGv~ll~~~a~~~  179 (303)
                      ++  +.+.-+..++..  -+.++.+.+
T Consensus       146 k~--~~i~Gs~~~~~~--d~~~~l~l~  168 (172)
T d1h2ba2         146 SE--VSFEGSLVGNYV--ELHELVTLA  168 (172)
T ss_dssp             TT--CEEEECCSCCHH--HHHHHHHHH
T ss_pred             CC--cEEEEEEecCHH--HHHHHHHHH
Confidence            33  666655444432  345555443

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=94.09  E-value=0.034  Score=45.51  Aligned_cols=65  Identities=17%  Similarity=0.118  Sum_probs=44.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|+ |++|+.+++.+. .=++++.+ +|+.....+..      ...++....++++++.      .+|+|+-..
T Consensus        44 ~~~vgiiG~-G~IG~~va~~l~-~fg~~v~~-~d~~~~~~~~~------~~~~~~~~~~l~~~l~------~sD~v~~~~  108 (188)
T d2naca1          44 AMHVGTVAA-GRIGLAVLRRLA-PFDVHLHY-TDRHRLPESVE------KELNLTWHATREDMYP------VCDVVTLNC  108 (188)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHG-GGTCEEEE-ECSSCCCHHHH------HHHTCEECSSHHHHGG------GCSEEEECS
T ss_pred             ccceeeccc-cccchhhhhhhh-ccCceEEE-Eeecccccccc------ccccccccCCHHHHHH------hccchhhcc
Confidence            479999998 999999999876 34777654 66532111111      1234556788999984      799887543

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=94.08  E-value=0.084  Score=45.04  Aligned_cols=116  Identities=14%  Similarity=0.154  Sum_probs=72.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCC------------CCCeeecCCHHHH
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ------------PLEIPVMSDLTMV   97 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~~------------~~gv~v~~dl~~~   97 (303)
                      -.+|+|-|+ |++|+..++.+. +.+..++++.|.+     ..|-|...+.....            ..+.....+.+++
T Consensus        31 g~~v~IqGf-GnVG~~~a~~L~-~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  108 (242)
T d1v9la1          31 GKTVAIQGM-GNVGRWTAYWLE-KMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAI  108 (242)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-TTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGG
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcchh
Confidence            368999997 999999999887 5699999998852     33455444332111            1122233445667


Q ss_pred             HhccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057           98 LGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus        98 l~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G-~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                      +.     .++||++=++..... .+++.   +.+..+|+|-. + ++++.. +   .-+++|+  ++.|-|.
T Consensus       109 ~~-----~~~DIliPcA~~~~I~~~~a~---~i~ak~IvegAN~p~t~~a~-~---~L~~rgI--~~~PD~~  166 (242)
T d1v9la1         109 FK-----LDVDIFVPAAIENVIRGDNAG---LVKARLVVEGANGPTTPEAE-R---ILYERGV--VVVPDIL  166 (242)
T ss_dssp             GG-----CCCSEEEECSCSSCBCTTTTT---TCCCSEEECCSSSCBCHHHH-H---HHHTTTC--EEECHHH
T ss_pred             cc-----ccccEEeecchhccccHHHHH---hcccCEEEecCCCCCChhHH-H---HHHhCCe--EEeCchh
Confidence            75     689999988765444 44443   45778999865 3 555432 2   2344444  5666554

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.07  E-value=0.03  Score=44.74  Aligned_cols=91  Identities=16%  Similarity=0.153  Sum_probs=53.5

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCCc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p  116 (303)
                      +|.|+|++|.+|...++.+. ..+.++++.++++.   . .                  +.+.+    ..+|-+||.+.+
T Consensus        28 ~VlI~ga~g~vG~~~iqla~-~~g~~vi~~~~~~~---~-~------------------~~l~~----~Ga~~vi~~~~~   80 (183)
T d1pqwa_          28 RVLIHSATGGVGMAAVSIAK-MIGARIYTTAGSDA---K-R------------------EMLSR----LGVEYVGDSRSV   80 (183)
T ss_dssp             EEEETTTTSHHHHHHHHHHH-HHTCEEEEEESSHH---H-H------------------HHHHT----TCCSEEEETTCS
T ss_pred             EEEEECCCCCcccccchhhc-cccccceeeecccc---c-c------------------ccccc----ccccccccCCcc
Confidence            69999988999999999665 56889888775421   1 1                  11211    356666666555


Q ss_pred             hhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcC
Q 022057          117 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (303)
Q Consensus       117 ~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~  156 (303)
                      +...+..+..-..|.++|+-++|-  +..+...++.+..|
T Consensus        81 ~~~~~v~~~t~~~g~d~v~d~~g~--~~~~~~~~~l~~~G  118 (183)
T d1pqwa_          81 DFADEILELTDGYGVDVVLNSLAG--EAIQRGVQILAPGG  118 (183)
T ss_dssp             THHHHHHHHTTTCCEEEEEECCCT--HHHHHHHHTEEEEE
T ss_pred             CHHHHHHHHhCCCCEEEEEecccc--hHHHHHHHHhcCCC
Confidence            443333333333566777766663  23444445555443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.91  E-value=0.0085  Score=48.27  Aligned_cols=32  Identities=34%  Similarity=0.477  Sum_probs=26.5

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      +|.|.|++|.+|+..++.+. ..+.+++++.++
T Consensus        30 ~VlI~ga~G~vG~~aiqlak-~~G~~vi~~~~~   61 (171)
T d1iz0a2          30 KVLVQAAAGALGTAAVQVAR-AMGLRVLAAASR   61 (171)
T ss_dssp             EEEESSTTBHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             EEEEEeccccchhhhhhhhc-cccccccccccc
Confidence            69999988999999998665 568898887654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=93.81  E-value=0.13  Score=41.73  Aligned_cols=123  Identities=11%  Similarity=0.093  Sum_probs=65.3

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC------CcEEEEEEecCCC-----CcchhhhhcCC--CCCCeeecCCHHHHHhcc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSHSV-----GEDIGMVCDME--QPLEIPVMSDLTMVLGSI  101 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~------~~eLvg~vd~~~~-----g~d~~~~~g~~--~~~gv~v~~dl~~~l~~~  101 (303)
                      ++||.|+||+|.+|..++-.+.+.+      ..+| -.+|.+..     |... ++-...  ....+.++++..+.+   
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L-~L~di~~~~~~l~g~~m-dl~d~a~~~~~~~~~~~~~~~~~---   98 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIAL-KLLGSERSFQALEGVAM-ELEDSLYPLLREVSIGIDPYEVF---   98 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEE-EEECCGGGHHHHHHHHH-HHHTTTCTTEEEEEEESCHHHHT---
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEE-EEecCccccchhcchhh-hhcccccccccCccccccchhhc---
Confidence            5899999999999999998877532      1223 24453211     1110 111110  112345567777777   


Q ss_pred             ccCCCccEEEEcC-Cc---hhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHH
Q 022057          102 SQSKARAVVIDFT-DA---STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI  177 (303)
Q Consensus       102 ~~~~~~DVvIDfT-~p---~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~  177 (303)
                         .++|+||-.. .|   ......+   ++.+.+++       .+..+.|.+.|.+ ++.+++.+|-   +|.+-.++.
T Consensus        99 ---~~aDvVvi~ag~~rkpg~tR~Dl---l~~N~~I~-------k~~~~~i~~~a~~-~~~vlvv~NP---vd~~t~ia~  161 (175)
T d7mdha1          99 ---EDVDWALLIGAKPRGPGMERAAL---LDINGQIF-------ADQGKALNAVASK-NVKVLVVGNP---CNTNALICL  161 (175)
T ss_dssp             ---TTCSEEEECCCCCCCTTCCHHHH---HHHHHHHH-------HHHHHHHHHHSCT-TCEEEECSSS---HHHHHHHHH
T ss_pred             ---cCCceEEEeeccCCCCCCcHHHH---HHHHHHHH-------HHHHHHHHhhCCC-CcEEEEecCc---HHHHHHHHH
Confidence               4899888544 11   1111111   11111111       2344556666542 3778888993   777777665


Q ss_pred             Hh
Q 022057          178 SA  179 (303)
Q Consensus       178 ~~  179 (303)
                      ..
T Consensus       162 k~  163 (175)
T d7mdha1         162 KN  163 (175)
T ss_dssp             HT
T ss_pred             HH
Confidence            53

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.60  E-value=0.22  Score=41.69  Aligned_cols=79  Identities=22%  Similarity=0.237  Sum_probs=54.5

Q ss_pred             CCCCCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE
Q 022057           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (303)
Q Consensus        30 ~~~~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (303)
                      +|+-+..++.|.|+++++|+.+++.+.+ .+.+|+. .+++.  ...                  +         .-..+
T Consensus         2 ~psl~gK~~lITGas~GIG~aia~~la~-~Ga~V~~-~~r~~--~~~------------------~---------~~~~~   50 (237)
T d1uzma1           2 KPPFVSRSVLVTGGNRGIGLAIAQRLAA-DGHKVAV-THRGS--GAP------------------K---------GLFGV   50 (237)
T ss_dssp             CCCCCCCEEEETTTTSHHHHHHHHHHHH-TTCEEEE-EESSS--CCC------------------T---------TSEEE
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCc--chh------------------c---------CceEE
Confidence            4555556799999999999999999884 6888765 44432  000                  0         11235


Q ss_pred             EEEcCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          110 VIDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      ..|.|.++...+.+..+.+.  ++++++-..|
T Consensus        51 ~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG   82 (237)
T d1uzma1          51 EVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG   82 (237)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             EEecCCHHHHHHHHHHHHHhcCCceEEEeeec
Confidence            66788888888888777765  5788876554

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.54  E-value=0.037  Score=43.99  Aligned_cols=32  Identities=31%  Similarity=0.266  Sum_probs=25.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      -+|.|+|+ |.+|...++.+. ..+.++++ +|.+
T Consensus        29 ~~vlI~Ga-G~vG~~a~q~ak-~~G~~vi~-~~~~   60 (168)
T d1piwa2          29 KKVGIVGL-GGIGSMGTLISK-AMGAETYV-ISRS   60 (168)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HHTCEEEE-EESS
T ss_pred             CEEEEECC-CCcchhHHHHhh-hccccccc-cccc
Confidence            36999998 999999988665 56899876 5643

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.50  E-value=0.13  Score=43.77  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=72.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCC------CCC-CeeecCCHHHHHhccc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME------QPL-EIPVMSDLTMVLGSIS  102 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~------~~~-gv~v~~dl~~~l~~~~  102 (303)
                      -.+|+|-|+ |++|+.+++.+.++-+..++++.|++     ..|.|..++....      ..+ +... -+.++++.   
T Consensus        32 g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~---  106 (239)
T d1gtma1          32 GKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATN-ITNEELLE---  106 (239)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEE-ECHHHHHH---
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCee-eccccccc---
Confidence            468999998 99999999988767799999998853     1233433322100      011 1221 25577876   


Q ss_pred             cCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCCeEEEcCCCc
Q 022057          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS  166 (303)
Q Consensus       103 ~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT--G~~~e~~~~L~~~a~~~~i~vv~a~N~S  166 (303)
                        .++||++=++..... .+++.   +-+..+|+|-.  .++++. .+  .+ .++|  +++.|-|-
T Consensus       107 --~~~DIl~PcA~~~~I~~~~a~---~i~ak~I~e~AN~p~t~ea-~~--~L-~~rg--I~~iPD~~  162 (239)
T d1gtma1         107 --LEVDVLAPAAIEEVITKKNAD---NIKAKIVAEVANGPVTPEA-DE--IL-FEKG--ILQIPDFL  162 (239)
T ss_dssp             --SCCSEEEECSCSCCBCTTGGG---GCCCSEEECCSSSCBCHHH-HH--HH-HHTT--CEEECHHH
T ss_pred             --ccccEEeeccccccccHHHHH---hccccEEEecCCCCCCHHH-HH--HH-HHCC--CEEecchh
Confidence              689999988765444 44443   56888999866  356543 22  23 3444  46667664

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.45  E-value=0.13  Score=40.10  Aligned_cols=32  Identities=31%  Similarity=0.363  Sum_probs=25.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (303)
                      -||+|+|+ |++|..++-.+...+-. ||+ .+|.
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~-L~D~   34 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELV-LIDV   34 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEE-EECC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEec
Confidence            38999998 99999999888766544 554 6774

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.43  E-value=0.23  Score=36.57  Aligned_cols=86  Identities=12%  Similarity=0.062  Sum_probs=48.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeec-CCHHH-HHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTM-VLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~~-~l~~~~~~~~~DVvIDf  113 (303)
                      .||.|+|+ |+.|..-++.+.+ .+.+++- +++.. ..+...++.   ...+... ..+++ .+      ..+|+++-.
T Consensus        13 k~vlVvG~-G~va~~ka~~ll~-~ga~v~v-~~~~~-~~~~~~~~~---~~~i~~~~~~~~~~dl------~~~~lv~~a   79 (113)
T d1pjqa1          13 RDCLIVGG-GDVAERKARLLLE-AGARLTV-NALTF-IPQFTVWAN---EGMLTLVEGPFDETLL------DSCWLAIAA   79 (113)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTBEEEE-EESSC-CHHHHHHHT---TTSCEEEESSCCGGGG------TTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCeEEE-EeccC-ChHHHHHHh---cCCceeeccCCCHHHh------CCCcEEeec
Confidence            58999997 9999999998885 4677654 44422 223333331   2222221 11111 12      356666666


Q ss_pred             CCchhH-HHHHHHHHHcCCCeE
Q 022057          114 TDASTV-YDNVKQATAFGMRSV  134 (303)
Q Consensus       114 T~p~a~-~~~~~~al~~g~~vV  134 (303)
                      |..+.. .+....|.+.|+++=
T Consensus        80 t~d~~~n~~i~~~a~~~~ilVN  101 (113)
T d1pjqa1          80 TDDDTVNQRVSDAAESRRIFCN  101 (113)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCHHHHHHHHHHHHHcCCEEE
Confidence            543333 455566667776654

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=93.39  E-value=0.13  Score=44.34  Aligned_cols=137  Identities=12%  Similarity=0.153  Sum_probs=82.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCC---------------CCCCeeecCCHH
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDME---------------QPLEIPVMSDLT   95 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~~---------------~~~gv~v~~dl~   95 (303)
                      .+|+|-|+ |++|+..++.+.+ .+..++++.|+     ++.|-|..++....               ...+...+ +.+
T Consensus        37 ~~v~IQGf-GnVG~~~a~~L~e-~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  113 (255)
T d1bgva1          37 KTVALAGF-GNVAWGAAKKLAE-LGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF-PGE  113 (255)
T ss_dssp             CEEEECCS-SHHHHHHHHHHHH-HTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE-ETC
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-cCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee-chh
Confidence            58999997 9999999998874 68999999884     23355543332100               00011111 223


Q ss_pred             HHHhccccCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCCeEEEcCCCcH---HH
Q 022057           96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---GS  169 (303)
Q Consensus        96 ~~l~~~~~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G-~~~e~~~~L~~~a~~~~i~vv~a~N~Si---Gv  169 (303)
                      +++.     .++||+|=+...... .+++......|+.+|++-- + .+++.   .+.+.+++|+  ++.|-+..   ||
T Consensus       114 ~~~~-----~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea---~~~ll~~~gI--~vvPD~laNaGGV  183 (255)
T d1bgva1         114 KPWG-----QKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEA---LRFLMQQPNM--VVAPSKAVNAGGV  183 (255)
T ss_dssp             CGGG-----SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHH---HHHHHHCTTC--EEECHHHHTTHHH
T ss_pred             hccc-----ccccEEeeccccccccHHHHHhhhhcCceEEecCCCCCcchHH---HHHHHHhcCC--EEehHhhhcCCce
Confidence            4554     589999866654444 7788888889999999866 3 45543   2223455444  56566532   33


Q ss_pred             HH-HHHHHHHhccCCCc
Q 022057          170 IL-LQQAAISASFHYKN  185 (303)
Q Consensus       170 ~l-l~~~a~~~~~~~~d  185 (303)
                      .+ -.+..+....+.|+
T Consensus       184 ivSy~E~~qn~~~~~w~  200 (255)
T d1bgva1         184 LVSGFEMSQNSERLSWT  200 (255)
T ss_dssp             HHHHHHHHHHHHTSCCC
T ss_pred             eeehhhhhhhhhhhhhh
Confidence            32 13345555555553

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=93.37  E-value=0.19  Score=43.64  Aligned_cols=35  Identities=17%  Similarity=0.274  Sum_probs=29.8

Q ss_pred             CCceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        33 ~~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      |.+.+|.|+|+||.+|+.+++.+.+ .+.++.+++.
T Consensus         1 ~~kktIlVtGatG~iG~~lv~~Ll~-~G~~V~~l~R   35 (350)
T d1xgka_           1 QQKKTIAVVGATGRQGASLIRVAAA-VGHHVRAQVH   35 (350)
T ss_dssp             CCCCCEEEESTTSHHHHHHHHHHHH-TTCCEEEEES
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHh-CCCeEEEEEC
Confidence            3467899999999999999999985 5889888764

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.35  E-value=0.032  Score=44.89  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=27.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      .-||+|+|+ |++|..++-.+...+-+.=+..+|.+
T Consensus        20 ~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          20 NNKITVVGV-GQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             SSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            469999998 99999999988876554434478853

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=93.29  E-value=0.078  Score=43.55  Aligned_cols=64  Identities=16%  Similarity=0.136  Sum_probs=43.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .+|+|+|+ |++|+.+++.+. .=++++.+ +|+.....+...      ......+.++++++.      .+|+|+...
T Consensus        48 ~tvgIiG~-G~IG~~va~~l~-~fg~~v~~-~d~~~~~~~~~~------~~~~~~~~~l~~ll~------~sD~v~l~~  111 (191)
T d1gdha1          48 KTLGIYGF-GSIGQALAKRAQ-GFDMDIDY-FDTHRASSSDEA------SYQATFHDSLDSLLS------VSQFFSLNA  111 (191)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-TTTCEEEE-ECSSCCCHHHHH------HHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             cceEEeec-ccchHHHHHHHH-hhcccccc-ccccccccchhh------cccccccCCHHHHHh------hCCeEEecC
Confidence            78999998 999999999766 56788765 665321111111      123344678999995      689988654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.14  E-value=0.05  Score=43.69  Aligned_cols=94  Identities=15%  Similarity=0.128  Sum_probs=49.1

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee---c--CC--HHHHHhccccCCCccE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---M--SD--LTMVLGSISQSKARAV  109 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v---~--~d--l~~~l~~~~~~~~~DV  109 (303)
                      +|.|+|+ |.+|...++.+... +..-|.++|++..  . -+++   .++|...   +  .|  .++.... .....+|+
T Consensus        30 ~VlV~Ga-GgvGl~a~~~ak~~-G~~~Vi~~d~~~~--k-l~~a---~~lGa~~~i~~~~~d~~~~~~~~~-~~~~G~d~  100 (174)
T d1p0fa2          30 TCAVFGL-GGVGFSAIVGCKAA-GASRIIGVGTHKD--K-FPKA---IELGATECLNPKDYDKPIYEVICE-KTNGGVDY  100 (174)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHH-TCSEEEEECSCGG--G-HHHH---HHTTCSEEECGGGCSSCHHHHHHH-HTTSCBSE
T ss_pred             EEEEECC-CchhHHHHHHHHHc-CCceeeccCChHH--H-HHHH---HHcCCcEEEcCCCchhHHHHHHHH-hcCCCCcE
Confidence            6999998 99999999877644 4444556775421  1 1222   1233211   1  11  2333221 01134677


Q ss_pred             EEEcCCchhHHHHHHHHH-H-cCCCeEEeCCC
Q 022057          110 VIDFTDASTVYDNVKQAT-A-FGMRSVVYVPH  139 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al-~-~g~~vVigTTG  139 (303)
                      +||++......+....++ + .|+-+++|.++
T Consensus       101 vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~  132 (174)
T d1p0fa2         101 AVECAGRIETMMNALQSTYCGSGVTVVLGLAS  132 (174)
T ss_dssp             EEECSCCHHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred             EEEcCCCchHHHHHHHHHHHhcCceEEEEEec
Confidence            777775554444444333 3 25666666554

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.06  E-value=0.28  Score=38.26  Aligned_cols=34  Identities=26%  Similarity=0.394  Sum_probs=26.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (303)
                      ..||+|+|+ |.+|..++-.+...+-. ||+ .+|.+
T Consensus         6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~-L~Di~   40 (148)
T d1ldna1           6 GARVVVIGA-GFVGASYVFALMNQGIADEIV-LIDAN   40 (148)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhcCCCceEE-EEeec
Confidence            369999998 99999999988876543 555 68853

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.02  E-value=0.12  Score=41.04  Aligned_cols=94  Identities=19%  Similarity=0.226  Sum_probs=50.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-e--c--CCHHHHHhccccCCCccEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-V--M--SDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v--~--~dl~~~l~~~~~~~~~DVv  110 (303)
                      -+|+|+|+ |.+|...+..+.. -+.+.+.+.|++.  .. -+++   +++|.. +  +  .|+.+.+.++ ....+|++
T Consensus        30 ~~VlI~G~-G~iG~~~~~~ak~-~g~~~v~~~~~~~--~k-~~~a---~~~Ga~~~i~~~~~~~~~~i~~~-t~gg~D~v  100 (174)
T d1f8fa2          30 SSFVTWGA-GAVGLSALLAAKV-CGASIIIAVDIVE--SR-LELA---KQLGATHVINSKTQDPVAAIKEI-TDGGVNFA  100 (174)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHH-HTCSEEEEEESCH--HH-HHHH---HHHTCSEEEETTTSCHHHHHHHH-TTSCEEEE
T ss_pred             CEEEEeCC-CHHHhhhhhcccc-cccceeeeeccHH--HH-HHHH---HHcCCeEEEeCCCcCHHHHHHHH-cCCCCcEE
Confidence            36899998 9999999987764 4566676777532  11 1111   112211 1  1  2333333221 11357888


Q ss_pred             EEcCCchhH-HHHHHHHHHcCCCeEEeCC
Q 022057          111 IDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       111 IDfT~p~a~-~~~~~~al~~g~~vVigTT  138 (303)
                      ||++-.+.. ...++.....|+-+++|.+
T Consensus       101 id~~G~~~~~~~~~~~~~~~G~i~~~G~~  129 (174)
T d1f8fa2         101 LESTGSPEILKQGVDALGILGKIAVVGAP  129 (174)
T ss_dssp             EECSCCHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             EEcCCcHHHHHHHHhcccCceEEEEEeec
Confidence            888754444 3334444455666666643

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=92.98  E-value=0.028  Score=44.83  Aligned_cols=94  Identities=17%  Similarity=0.117  Sum_probs=55.0

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe---eec--CCHHHHHhccccCCCccEEE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVM--SDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv---~v~--~dl~~~l~~~~~~~~~DVvI  111 (303)
                      +|.|+|++|.+|...++.+. ..+.++++...++.   ....+.    ++|.   -.+  .|+.+-+.++.....+|+++
T Consensus        31 ~Vlv~ga~g~vG~~~iqlak-~~Ga~Vi~~~~s~~---k~~~~~----~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~  102 (179)
T d1qora2          31 QFLFHAAAGGVGLIACQWAK-ALGAKLIGTVGTAQ---KAQSAL----KAGAWQVINYREEDLVERLKEITGGKKVRVVY  102 (179)
T ss_dssp             EEEESSTTBHHHHHHHHHHH-HHTCEEEEEESSHH---HHHHHH----HHTCSEEEETTTSCHHHHHHHHTTTCCEEEEE
T ss_pred             EEEEEccccccchHHHHHHH-HhCCeEeecccchH---HHHHHH----hcCCeEEEECCCCCHHHHHHHHhCCCCeEEEE
Confidence            69999998999999999665 57888887655421   111111    1221   112  24444332222234578888


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTT  138 (303)
                      |+...+............|.-+++|..
T Consensus       103 d~~g~~~~~~~~~~l~~~G~~v~~g~~  129 (179)
T d1qora2         103 DSVGRDTWERSLDCLQRRGLMVSFGNS  129 (179)
T ss_dssp             ECSCGGGHHHHHHTEEEEEEEEECCCT
T ss_pred             eCccHHHHHHHHHHHhcCCeeeecccc
Confidence            888777665555555555655555544

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=92.98  E-value=0.16  Score=42.02  Aligned_cols=109  Identities=17%  Similarity=0.232  Sum_probs=69.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .+|+|.|+ |++|+.+++.+.+ .+..|+ +.|.+.  ..+....    ..+.... +.++++.     .++||++=+..
T Consensus        28 k~v~IqG~-G~VG~~~A~~L~~-~Gakvv-v~d~d~--~~~~~~~----~~g~~~~-~~~~~~~-----~~~DI~iPcA~   92 (201)
T d1c1da1          28 LTVLVQGL-GAVGGSLASLAAE-AGAQLL-VADTDT--ERVAHAV----ALGHTAV-ALEDVLS-----TPCDVFAPCAM   92 (201)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----HTTCEEC-CGGGGGG-----CCCSEEEECSC
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCEEE-EecchH--HHHHHHH----hhccccc-Ccccccc-----ccceeeecccc
Confidence            68999997 9999999998875 689887 455431  1111111    2233322 4567775     58999997776


Q ss_pred             chhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057          116 ASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (303)
Q Consensus       116 p~a~-~~~~~~al~~g~~vVigTT--G~~~e~~~~L~~~a~~~~i~vv~a~N~Si  167 (303)
                      .... .+++.   +-+..+|+|-.  .++++..   .+.-+++|  +++.|-|-.
T Consensus        93 ~~~I~~~~a~---~i~ak~i~e~AN~p~~~~~~---~~~L~~rg--I~~iPD~la  139 (201)
T d1c1da1          93 GGVITTEVAR---TLDCSVVAGAANNVIADEAA---SDILHARG--ILYAPDFVA  139 (201)
T ss_dssp             SCCBCHHHHH---HCCCSEECCSCTTCBCSHHH---HHHHHHTT--CEECCHHHH
T ss_pred             cccccHHHHh---hhhhheeeccCCCCcchhhH---HHHhcccc--eEEEehhhh
Confidence            5554 44444   55789999876  2554433   33344544  477888765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.93  E-value=0.061  Score=42.37  Aligned_cols=31  Identities=32%  Similarity=0.380  Sum_probs=24.5

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      +|.|+|+ |.||...++.+. ..+.++++ +|++
T Consensus        29 ~vlV~G~-G~vG~~~~~~ak-~~Ga~vi~-v~~~   59 (170)
T d1e3ja2          29 TVLVIGA-GPIGLVSVLAAK-AYGAFVVC-TARS   59 (170)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCEEEE-EESC
T ss_pred             EEEEEcc-cccchhhHhhHh-hhcccccc-cchH
Confidence            6999997 999999998665 56788775 5543

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=92.92  E-value=0.15  Score=44.28  Aligned_cols=33  Identities=24%  Similarity=0.271  Sum_probs=26.7

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhc-CCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~-~~~eLvg~vd   68 (303)
                      ||||.|.|++|-+|+.+++.+.+. .++.+++ +|
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~-~d   35 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTV-LD   35 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEE-EE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEE-Ee
Confidence            689999999999999999998764 3456664 55

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.84  E-value=0.072  Score=42.81  Aligned_cols=93  Identities=13%  Similarity=0.162  Sum_probs=51.9

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCeee---c---CC-HHHHHhccccCCCcc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPV---M---SD-LTMVLGSISQSKARA  108 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~~~~~g~~~~~gv~v---~---~d-l~~~l~~~~~~~~~D  108 (303)
                      -|+|+|+ |.+|...++.+. ..+. +++ ++|.+..-.+   ++   .++|...   +   ++ .+++.. ......+|
T Consensus        32 tVlI~G~-GgvGl~ai~~ak-~~G~~~Vi-~vd~~~~kl~---~A---k~~GA~~~in~~~~~~~~~~~~~-~~~g~G~d  101 (176)
T d1d1ta2          32 TCVVFGL-GGVGLSVIMGCK-SAGASRII-GIDLNKDKFE---KA---MAVGATECISPKDSTKPISEVLS-EMTGNNVG  101 (176)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCSEEE-EECSCGGGHH---HH---HHHTCSEEECGGGCSSCHHHHHH-HHHTSCCC
T ss_pred             EEEEECC-CchhHHHHHHHH-HcCCceEE-EecCcHHHHH---HH---HhcCCcEEECccccchHHHHHHH-Hhccccce
Confidence            3899998 999999999776 4554 555 4665421111   11   1222211   1   11 222211 01124689


Q ss_pred             EEEEcCCchhHHHHHHH-HHHc-CCCeEEeCCC
Q 022057          109 VVIDFTDASTVYDNVKQ-ATAF-GMRSVVYVPH  139 (303)
Q Consensus       109 VvIDfT~p~a~~~~~~~-al~~-g~~vVigTTG  139 (303)
                      ++||++......+.... +.+. |+-+++|.+.
T Consensus       102 ~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~  134 (176)
T d1d1ta2         102 YTFEVIGHLETMIDALASCHMNYGTSVVVGVPP  134 (176)
T ss_dssp             EEEECSCCHHHHHHHHTTSCTTTCEEEECSCCC
T ss_pred             EEEEeCCchHHHHHHHHHhhcCCeEEEEEEccc
Confidence            99999876665555443 3344 6777888764

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=92.67  E-value=0.12  Score=42.45  Aligned_cols=60  Identities=18%  Similarity=0.207  Sum_probs=41.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .+|+|+|+ |++|+.+++.+. .=++++.+ +|+...  + .      ....+ -+.++++++.      .+|+++-..
T Consensus        46 ktvgIiG~-G~IG~~va~~l~-~fg~~v~~-~d~~~~--~-~------~~~~~-~~~~l~~l~~------~~D~v~~~~  105 (199)
T d1dxya1          46 QTVGVMGT-GHIGQVAIKLFK-GFGAKVIA-YDPYPM--K-G------DHPDF-DYVSLEDLFK------QSDVIDLHV  105 (199)
T ss_dssp             SEEEEECC-SHHHHHHHHHHH-HTTCEEEE-ECSSCC--S-S------CCTTC-EECCHHHHHH------HCSEEEECC
T ss_pred             eeeeeeec-cccccccccccc-ccceeeec-cCCccc--h-h------hhcch-hHHHHHHHHH------hcccceeee
Confidence            68999998 999999999876 45888875 665321  1 0      01111 2458999985      689887654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=92.58  E-value=0.088  Score=43.50  Aligned_cols=62  Identities=15%  Similarity=0.064  Sum_probs=42.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|+|+ |++|+.+++.+. .=++++.+ +|+..  ....+.      .++ ...++++++.      .+|+++-..
T Consensus        43 gk~vgIiG~-G~IG~~va~~l~-~fg~~V~~-~d~~~--~~~~~~------~~~-~~~~l~~~l~------~sDii~~~~  104 (197)
T d1j4aa1          43 DQVVGVVGT-GHIGQVFMQIME-GFGAKVIT-YDIFR--NPELEK------KGY-YVDSLDDLYK------QADVISLHV  104 (197)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHH-HTTCEEEE-ECSSC--CHHHHH------TTC-BCSCHHHHHH------HCSEEEECS
T ss_pred             CCeEEEecc-cccchhHHHhHh-hhcccccc-cCccc--cccccc------cee-eecccccccc------ccccccccC
Confidence            368999998 999999999886 46888875 56532  111111      112 2468999995      689988554

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.56  E-value=0.61  Score=36.38  Aligned_cols=95  Identities=17%  Similarity=0.125  Sum_probs=50.0

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-----cCCHHHHHhcc--ccCCCccE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-----MSDLTMVLGSI--SQSKARAV  109 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-----~~dl~~~l~~~--~~~~~~DV  109 (303)
                      +|+|+|+ |.||...+..+.. -+.+-+-++|+..   +--+++   .++|...     ..+..+....+  .....+|+
T Consensus        29 ~VlI~G~-G~iG~~~~~~a~~-~G~~~Vi~~d~~~---~rl~~a---~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dv  100 (171)
T d1pl8a2          29 KVLVCGA-GPIGMVTLLVAKA-MGAAQVVVTDLSA---TRLSKA---KEIGADLVLQISKESPQEIARKVEGQLGCKPEV  100 (171)
T ss_dssp             EEEEECC-SHHHHHHHHHHHH-TTCSEEEEEESCH---HHHHHH---HHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred             EEEEECC-CccHHHHHHHHHH-cCCceEEeccCCH---HHHHHH---HHhCCcccccccccccccccccccccCCCCceE
Confidence            6999998 9999999987764 5664344466542   111122   1223211     12333322100  01135788


Q ss_pred             EEEcCCchhHHHHHHHHHHcC-CCeEEeCCC
Q 022057          110 VIDFTDASTVYDNVKQATAFG-MRSVVYVPH  139 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~g-~~vVigTTG  139 (303)
                      +||++..+...+....+++.| +=+++|.++
T Consensus       101 vid~~G~~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2         101 TIECTGAEASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             EEECSCCHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             EEeccCCchhHHHHHHHhcCCCEEEEEecCC
Confidence            888886555555554444444 444455543

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.55  E-value=0.95  Score=36.00  Aligned_cols=30  Identities=20%  Similarity=0.294  Sum_probs=24.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      |||+|+|. |.+|-.++..+ + .+++++| +|.
T Consensus         1 MkI~ViGl-G~vGl~~a~~~-a-~g~~V~g-~Di   30 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLL-S-LQNEVTI-VDI   30 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHH-T-TTSEEEE-ECS
T ss_pred             CEEEEECC-ChhHHHHHHHH-H-CCCcEEE-EEC
Confidence            79999997 99999998654 4 5899885 774

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.49  E-value=0.43  Score=39.92  Aligned_cols=78  Identities=26%  Similarity=0.333  Sum_probs=53.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT  114 (303)
                      .++.|.|+++++|+.+++.+.+ .+.+++. .+++.  .++                  +++.++    .+. =+..|.+
T Consensus         6 K~~lITGas~GIG~aia~~l~~-~G~~V~~-~~r~~--~~l------------------~~~~~~----~~~~~~~~Dv~   59 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAK-EGARLVA-CDIEE--GPL------------------REAAEA----VGAHPVVMDVA   59 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHH------------------HHHHHT----TTCEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHH------------------HHHHHH----cCCeEEEEecC
Confidence            3588899999999999999884 6888664 55542  111                  222221    111 2556899


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++++=..|
T Consensus        60 ~~~~v~~~~~~~~~~~g~iDilVnnAG   86 (242)
T d1ulsa_          60 DPASVERGFAEALAHLGRLDGVVHYAG   86 (242)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCceEEEECCc
Confidence            999999888887665  6888885544

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.46  E-value=0.09  Score=41.45  Aligned_cols=89  Identities=11%  Similarity=0.055  Sum_probs=52.6

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee----ec---CCHHHHHhccccCCCccE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP----VM---SDLTMVLGSISQSKARAV  109 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~----v~---~dl~~~l~~~~~~~~~DV  109 (303)
                      .|.|.|+ |.+|...++.+.. -+...+.+++++..-   .+++   .++|..    ..   ++.++.+... ....+|+
T Consensus        31 tVlI~Ga-GGvG~~aiq~ak~-~G~~~vi~~~~~~~k---~~~a---k~lGa~~~i~~~~~~~~~~~~~~~~-~~~g~D~  101 (176)
T d2fzwa2          31 VCAVFGL-GGVGLAVIMGCKV-AGASRIIGVDINKDK---FARA---KEFGATECINPQDFSKPIQEVLIEM-TDGGVDY  101 (176)
T ss_dssp             EEEEECC-SHHHHHHHHHHHH-HTCSEEEEECSCGGG---HHHH---HHHTCSEEECGGGCSSCHHHHHHHH-TTSCBSE
T ss_pred             EEEEecc-hhHHHHHHHHHHH-HhcCceEEEcccHHH---HHHH---HHhCCcEEEeCCchhhHHHHHHHHH-cCCCCcE
Confidence            5999998 8999999987765 455556666654211   1122   122221    11   2333333211 1245899


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCeE
Q 022057          110 VIDFTDASTVYDNVKQATAFGMRSV  134 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~g~~vV  134 (303)
                      +||++-.+...+....+++.|.-++
T Consensus       102 vid~~G~~~~~~~~~~~~~~g~~~~  126 (176)
T d2fzwa2         102 SFECIGNVKVMRAALEACHKGWGVS  126 (176)
T ss_dssp             EEECSCCHHHHHHHHHTBCTTTCEE
T ss_pred             eeecCCCHHHHHHHHHhhcCCceeE
Confidence            9999877777777777777775543

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.38  E-value=0.43  Score=40.10  Aligned_cols=82  Identities=11%  Similarity=0.122  Sum_probs=54.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---EEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (303)
                      ..+.|.|+++.||+.+++.+.+ .+..|+. .+++.  +...+.              .+++.+.    ...+   +..|
T Consensus         6 K~~lITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~~~~~--------------~~~l~~~----~g~~~~~~~~D   63 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAE-AGCSVVV-ASRNL--EEASEA--------------AQKLTEK----YGVETMAFRCD   63 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHH--------------HHHHHHH----HCCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH--------------HHHHHHH----hCCcEEEEEcc
Confidence            3578999999999999999884 6788654 55532  111111              1122211    1223   3458


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .|.++.+.+.+..+.+.  ++++++=..|
T Consensus        64 v~~~~~v~~~~~~~~~~~g~iDiLVnnAG   92 (251)
T d1vl8a_          64 VSNYEEVKKLLEAVKEKFGKLDTVVNAAG   92 (251)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            99999999988888775  6899986655

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=92.28  E-value=0.033  Score=44.86  Aligned_cols=95  Identities=15%  Similarity=0.148  Sum_probs=61.9

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccc---cCCCccEEEEc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSIS---QSKARAVVIDF  113 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~---~~~~~DVvIDf  113 (303)
                      .|.|.|++|.+|...++... .-+.++++...++.   ....+.    ++|....-+.++...+..   ....+|+++|.
T Consensus        26 ~VLV~gaaGgVG~~avQlAk-~~Ga~Viat~~s~~---k~~~~~----~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~   97 (167)
T d1tt7a2          26 SVLVTGATGGVGGIAVSMLN-KRGYDVVASTGNRE---AADYLK----QLGASEVISREDVYDGTLKALSKQQWQGAVDP   97 (167)
T ss_dssp             CEEEESTTSHHHHHHHHHHH-HHTCCEEEEESSSS---THHHHH----HHTCSEEEEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred             EEEEeCCcchHHHHHHHHHH-HcCCceEEEecCHH---HHHHHH----hhcccceEeccchhchhhhcccCCCceEEEec
Confidence            49999999999999998655 57899998776542   111111    233322223333222111   12458999999


Q ss_pred             CCchhHHHHHHHHHHcCCCeEEeCCC
Q 022057          114 TDASTVYDNVKQATAFGMRSVVYVPH  139 (303)
Q Consensus       114 T~p~a~~~~~~~al~~g~~vVigTTG  139 (303)
                      --.+...+.+......|.-+++|.++
T Consensus        98 vgg~~~~~~~~~l~~~G~iv~~G~~~  123 (167)
T d1tt7a2          98 VGGKQLASLLSKIQYGGSVAVSGLTG  123 (167)
T ss_dssp             CCTHHHHHHHTTEEEEEEEEECCCSS
T ss_pred             CcHHHHHHHHHHhccCceEEEeeccC
Confidence            88887777777777778888888774

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.27  E-value=0.046  Score=44.25  Aligned_cols=91  Identities=11%  Similarity=0.149  Sum_probs=55.4

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .|.|.|++|.+|+..++... .-+.+ ++++.++++   .                  ..++..+    ..+|.+||.+.
T Consensus        33 tVLI~gaaGgVG~~aiQlak-~~Ga~~vi~~~~~~e---~------------------~~~l~~~----~gad~vi~~~~   86 (187)
T d1vj1a2          33 TMVVSGAAGACGSLAGQIGH-LLGCSRVVGICGTQE---K------------------CLFLTSE----LGFDAAVNYKT   86 (187)
T ss_dssp             EEEESSTTSTTGGGHHHHHH-HTTCSEEEEEESSHH---H------------------HHHHHHH----SCCSEEEETTS
T ss_pred             EEEEECCCchhhHHHHHHHH-HcCCcceecccchHH---H------------------Hhhhhhc----ccceEEeeccc
Confidence            59999989999999999765 44654 444333321   0                  0112211    46788888886


Q ss_pred             chhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcC
Q 022057          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~  156 (303)
                      ++.. +.++.....|.++|+-+.|-  +..+...+..+..|
T Consensus        87 ~~~~-~~~~~~~~~GvDvv~D~vGg--~~~~~~~~~l~~~G  124 (187)
T d1vj1a2          87 GNVA-EQLREACPGGVDVYFDNVGG--DISNTVISQMNENS  124 (187)
T ss_dssp             SCHH-HHHHHHCTTCEEEEEESSCH--HHHHHHHTTEEEEE
T ss_pred             hhHH-HHHHHHhccCceEEEecCCc--hhHHHHhhhccccc
Confidence            6544 44444446788888888873  34445545445443

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=92.26  E-value=0.53  Score=35.63  Aligned_cols=115  Identities=10%  Similarity=0.002  Sum_probs=69.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      |||.+.|. -.--....+.+.+..++++.- .+...                   ..+..+.+      .++|+++-+..
T Consensus         1 MKIl~~~~-~~~e~~~l~~~~~~~~~~v~~-~~~~~-------------------~~~~~~~~------~~~d~ii~~~~   53 (131)
T d1dxya2           1 MKIIAYGA-RVDEIQYFKQWAKDTGNTLEY-HTEFL-------------------DENTVEWA------KGFDGINSLQT   53 (131)
T ss_dssp             CEEEECSC-CTTTHHHHHHHHHHHCCEEEE-CSSCC-------------------CTTGGGGG------TTCSEEEECCS
T ss_pred             CEEEEEec-CcCcHHHHHHHHHHcCeEEEE-cCCCC-------------------CHHHHHHh------cCCCEEEEecC
Confidence            57888776 455566666666666777643 11100                   01112222      47898876665


Q ss_pred             chhHHHHHHHHHHcCCCeEEeC-CCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHH------HHHHHHHHhcc
Q 022057          116 ASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCLIAPTLSIGSI------LLQQAAISASF  181 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~vVigT-TG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~------ll~~~a~~~~~  181 (303)
                      .....+.+..+-+.+..+|.-. +|++--+    .++|++.|+++.-.|+++--.+      +|..+++.+.+
T Consensus        54 ~~~~~~vl~~l~~~~Lk~I~~~~vG~d~ID----~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~  122 (131)
T d1dxya2          54 TPYAAGVFEKMHAYGIKFLTIRNVGTDNID----MTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTK  122 (131)
T ss_dssp             SCBCHHHHHHHHHTTCCEEEESSSCCTTBC----HHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHhhcccCCeEEEEEccccccccc----ccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHH
Confidence            5555666666667777777543 4886433    3567788999999999887654      33445555543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=92.23  E-value=0.084  Score=42.06  Aligned_cols=71  Identities=10%  Similarity=0.199  Sum_probs=42.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC-CCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ-PLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~-~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .+|.|+|+ |+.+|.++-++.+ .+.+ +-+++++.  ..+.+++.... ...+... ++++...     .++|++|.+|
T Consensus        19 k~vlIlGa-GGaarai~~al~~-~g~~-i~I~nRt~--~ka~~l~~~~~~~~~~~~~-~~~~~~~-----~~~dliIN~T   87 (170)
T d1nyta1          19 LRILLIGA-GGASRGVLLPLLS-LDCA-VTITNRTV--SRAEELAKLFAHTGSIQAL-SMDELEG-----HEFDLIINAT   87 (170)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCE-EEEECSSH--HHHHHHHHHTGGGSSEEEC-CSGGGTT-----CCCSEEEECC
T ss_pred             CEEEEECC-cHHHHHHHHHhcc-cceE-EEeccchH--HHHHHHHHHHhhccccccc-ccccccc-----cccceeeccc
Confidence            57999998 9999999998875 4677 55677642  22222221111 1122222 3333322     4789999998


Q ss_pred             Cch
Q 022057          115 DAS  117 (303)
Q Consensus       115 ~p~  117 (303)
                      +..
T Consensus        88 p~G   90 (170)
T d1nyta1          88 SSG   90 (170)
T ss_dssp             SCG
T ss_pred             ccC
Confidence            644

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.15  E-value=0.16  Score=40.09  Aligned_cols=85  Identities=7%  Similarity=0.040  Sum_probs=46.7

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe---eec----CCHHHHHhccccCCCccE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVM----SDLTMVLGSISQSKARAV  109 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv---~v~----~dl~~~l~~~~~~~~~DV  109 (303)
                      .|.|+|+ |.+|...+..+...-...++ ++|++..  . .+++   .+.|.   ..+    +.+++.+.. .....+|+
T Consensus        31 tVlV~Ga-GG~G~~~~~~~~~~g~~~Vi-~~~~~~~--k-~~~a---~~~Ga~~~i~~~~~~~~~~~~~~~-~~~~G~D~  101 (176)
T d2jhfa2          31 TCAVFGL-GGVGLSVIMGCKAAGAARII-GVDINKD--K-FAKA---KEVGATECVNPQDYKKPIQEVLTE-MSNGGVDF  101 (176)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCSEEE-EECSCGG--G-HHHH---HHTTCSEEECGGGCSSCHHHHHHH-HTTSCBSE
T ss_pred             EEEEECC-CCcHHHHHHHHHHcCCceEE-eecCcHH--H-HHHH---HHhCCeeEEecCCchhHHHHHHHH-HhcCCCCE
Confidence            4999999 89999999877755444444 5665321  1 1111   12221   111    123333321 11236899


Q ss_pred             EEEcCCchhHHHHHHHHHHcC
Q 022057          110 VIDFTDASTVYDNVKQATAFG  130 (303)
Q Consensus       110 vIDfT~p~a~~~~~~~al~~g  130 (303)
                      +||++......+.....++.+
T Consensus       102 vid~~G~~~~~~~a~~~~~~~  122 (176)
T d2jhfa2         102 SFEVIGRLDTMVTALSCCQEA  122 (176)
T ss_dssp             EEECSCCHHHHHHHHHHBCTT
T ss_pred             EEecCCchhHHHHHHHHHhcC
Confidence            999987766666555555554

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.13  E-value=0.15  Score=41.36  Aligned_cols=60  Identities=23%  Similarity=0.104  Sum_probs=41.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      -.+|+|+|+ |++|+.+++.+. .-++++.+ +|+..  ..        ......-+.++++++.      .+|+++-.
T Consensus        44 ~~~vgiiG~-G~IG~~va~~l~-~fg~~v~~-~d~~~--~~--------~~~~~~~~~~l~ell~------~sDii~i~  103 (188)
T d1sc6a1          44 GKKLGIIGY-GHIGTQLGILAE-SLGMYVYF-YDIEN--KL--------PLGNATQVQHLSDLLN------MSDVVSLH  103 (188)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-HTTCEEEE-ECSSC--CC--------CCTTCEECSCHHHHHH------HCSEEEEC
T ss_pred             ceEEEEeec-ccchhhhhhhcc-cccceEee-ccccc--cc--------hhhhhhhhhhHHHHHh------hccceeec
Confidence            368999998 999999999765 56888775 55432  10        0112233568999995      68988754

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.81  E-value=0.5  Score=39.96  Aligned_cols=80  Identities=20%  Similarity=0.165  Sum_probs=53.3

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcc-hhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---EEEE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED-IGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d-~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (303)
                      .+.|.|+++++|+.+++.+.+ .+..|+. .+++.  ++ +.++               .+.+.+    ...+   +..|
T Consensus         9 ~alITGas~GIG~aia~~la~-~G~~Vv~-~~r~~--~~~~~~~---------------~~~~~~----~g~~~~~~~~D   65 (261)
T d1geea_           9 VVVITGSSTGLGKSMAIRFAT-EKAKVVV-NYRSK--EDEANSV---------------LEEIKK----VGGEAIAVKGD   65 (261)
T ss_dssp             EEEETTCSSHHHHHHHHHHHH-TTCEEEE-EESSC--HHHHHHH---------------HHHHHH----TTCEEEEEECC
T ss_pred             EEEEeCCCcHHHHHHHHHHHH-CCCEEEE-EeCCc--HHHHHHH---------------HHHHHh----cCCcEEEEEcc
Confidence            477889999999999999884 6888775 34331  11 1111               112221    2333   3458


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .|.++.+.+.+..+.+.  ++++++=..|
T Consensus        66 vt~~~~v~~~~~~~~~~~G~iDiLVnnAG   94 (261)
T d1geea_          66 VTVESDVINLVQSAIKEFGKLDVMINNAG   94 (261)
T ss_dssp             TTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEeeccce
Confidence            89999999988888775  6899987665

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=91.80  E-value=0.66  Score=38.85  Aligned_cols=80  Identities=14%  Similarity=0.121  Sum_probs=51.6

Q ss_pred             eE-EEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---EEEE
Q 022057           37 KV-IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (303)
Q Consensus        37 kV-~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (303)
                      || .|.|+++.||+.+++.+. +.+..|+. .+++.  ..+.+..              +++ .+    ...+   +..|
T Consensus         3 KValITGas~GIG~aia~~la-~~Ga~V~i-~~r~~--~~l~~~~--------------~~l-~~----~g~~~~~~~~D   59 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLG-KEGLRVFV-CARGE--EGLRTTL--------------KEL-RE----AGVEADGRTCD   59 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHHHHH--------------HHH-HH----TTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHHH--------------HHH-Hh----cCCcEEEEEee
Confidence            45 577999999999999887 46888654 55542  1111111              111 11    1223   3458


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .|.++.+.+.+..+.+.  +++++|-..|
T Consensus        60 vs~~~~v~~~~~~~~~~~g~iDilVnnAG   88 (257)
T d2rhca1          60 VRSVPEIEALVAAVVERYGPVDVLVNNAG   88 (257)
T ss_dssp             TTCHHHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCEEEeccc
Confidence            99999999999888764  4788885544

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.78  E-value=0.22  Score=45.82  Aligned_cols=32  Identities=25%  Similarity=0.360  Sum_probs=26.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      .||.|+|+ |.+|..+++.+. ..|+.=+-++|.
T Consensus        38 ~kVlvvG~-GglG~ei~k~L~-~~Gvg~i~lvD~   69 (426)
T d1yovb1          38 CKVLVIGA-GGLGCELLKNLA-LSGFRQIHVIDM   69 (426)
T ss_dssp             CCEEEECS-STTHHHHHHHHH-TTTCCCEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHH-HcCCCeEEEEEC
Confidence            58999999 999999999887 456655567774

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.69  E-value=0.19  Score=39.58  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=26.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      +.||+|+|+ |++|+.++-.+....=.||+ .+|.+
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~-L~Di~   36 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIV   36 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEE-EECSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCCCeEE-EEecc
Confidence            469999997 99999999877766545755 78853

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=91.47  E-value=0.53  Score=37.48  Aligned_cols=72  Identities=19%  Similarity=0.147  Sum_probs=42.9

Q ss_pred             ceeEEEEcCCcHHHHH--HHHHHHhcCC---cEEEEEEecCCC-----Ccchhhhh-cCCCCCCeeecCCHHHHHhcccc
Q 022057           35 NIKVIINGAVKEIGRA--AVIAVTKARG---MEVAGAIDSHSV-----GEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQ  103 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~--i~~~i~~~~~---~eLvg~vd~~~~-----g~d~~~~~-g~~~~~gv~v~~dl~~~l~~~~~  103 (303)
                      .|||+|+|+ |..|..  +...+...+.   -||+ .+|.++.     ..+..... ....+..+..++|+++++     
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eiv-L~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL-----   74 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVT-LMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVI-----   74 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEE-EECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH-----
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEE-EEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcc-----
Confidence            479999998 999965  3444544443   4666 5775420     01111111 111244566678999998     


Q ss_pred             CCCccEEEEcC
Q 022057          104 SKARAVVIDFT  114 (303)
Q Consensus       104 ~~~~DVvIDfT  114 (303)
                       .++|+||...
T Consensus        75 -~dad~Vv~~~   84 (171)
T d1obba1          75 -IDADFVINTA   84 (171)
T ss_dssp             -TTCSEEEECC
T ss_pred             -cCCCeEeeec
Confidence             4899998644

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=91.35  E-value=0.2  Score=43.91  Aligned_cols=30  Identities=23%  Similarity=0.313  Sum_probs=24.9

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      +|.|.|++|-+|+.+++.+.+ .+.+++++.
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~-~g~~V~~~~   32 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLE-KGYEVHGIK   32 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             EEEEeCCCcHHHHHHHHHHHH-CcCEEEEEE
Confidence            345999999999999999986 489998654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.14  E-value=0.46  Score=37.08  Aligned_cols=32  Identities=28%  Similarity=0.351  Sum_probs=22.9

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      +|.|+|+ |.+|...+..+... +...|.++|+.
T Consensus        31 ~VlI~G~-Gg~g~~~~~~~~~~-g~~~Vi~~~~~   62 (175)
T d1cdoa2          31 TCAVFGL-GAVGLAAVMGCHSA-GAKRIIAVDLN   62 (175)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHT-TCSEEEEECSC
T ss_pred             EEEEEec-CCccchHHHHHHHH-hhchheeecch
Confidence            5999998 89999888877754 44444456654

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.10  E-value=0.073  Score=43.10  Aligned_cols=96  Identities=17%  Similarity=0.157  Sum_probs=54.0

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecC-CHHHHHhccccCCCccEEEEcCC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      +|.|.|++|.+|...++.+. .-+.++++...++.. .+...-.|  ...-+. ++ +.++.... .....+|+|+|.--
T Consensus        34 ~VLI~gaaGGVG~~aiQlak-~~Ga~Viat~~s~~k-~~~~~~lG--a~~vi~-~~~~~~~~~~~-~~~~gvD~vid~vg  107 (176)
T d1xa0a2          34 PVLVTGATGGVGSLAVSMLA-KRGYTVEASTGKAAE-HDYLRVLG--AKEVLA-REDVMAERIRP-LDKQRWAAAVDPVG  107 (176)
T ss_dssp             CEEESSTTSHHHHHHHHHHH-HTTCCEEEEESCTTC-HHHHHHTT--CSEEEE-CC----------CCSCCEEEEEECST
T ss_pred             EEEEEeccchHHHHHHHHHH-HcCCceEEecCchHH-HHHHHhcc--cceeee-cchhHHHHHHH-hhccCcCEEEEcCC
Confidence            59999999999999999655 579999987764321 11111111  111111 22 22222221 12346899999776


Q ss_pred             chhHHHHHHHHHHcCCCeEEeCC
Q 022057          116 ASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       116 p~a~~~~~~~al~~g~~vVigTT  138 (303)
                      .+.....+......|.=+++|.+
T Consensus       108 g~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2         108 GRTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             TTTHHHHHHTEEEEEEEEECSCC
T ss_pred             chhHHHHHHHhCCCceEEEeecc
Confidence            56555555555556666667766

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.08  E-value=0.88  Score=38.01  Aligned_cols=81  Identities=14%  Similarity=0.132  Sum_probs=50.4

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcCCc
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFTDA  116 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT~p  116 (303)
                      +.|.|+++++|+.+++.+. ..+..|+ +++++.  ..+.+..               +.+.+  ...++ -+..|.|.+
T Consensus        13 alITGas~GIG~a~a~~la-~~Ga~V~-~~~r~~--~~l~~~~---------------~~l~~--~g~~~~~~~~Dvt~~   71 (251)
T d2c07a1          13 ALVTGAGRGIGREIAKMLA-KSVSHVI-CISRTQ--KSCDSVV---------------DEIKS--FGYESSGYAGDVSKK   71 (251)
T ss_dssp             EEEESTTSHHHHHHHHHHT-TTSSEEE-EEESSH--HHHHHHH---------------HHHHT--TTCCEEEEECCTTCH
T ss_pred             EEEeCCCCHHHHHHHHHHH-HcCCEEE-EEECCH--HHHHHHH---------------HHHHh--cCCcEEEEEccCCCH
Confidence            5566999999999999887 5688765 456532  1111111               11111  00112 245688999


Q ss_pred             hhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          117 STVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       117 ~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      +.+.+.+..+.+.  ++++++-..|
T Consensus        72 ~~v~~~~~~~~~~~g~iDilvnnag   96 (251)
T d2c07a1          72 EEISEVINKILTEHKNVDILVNNAG   96 (251)
T ss_dssp             HHHHHHHHHHHHHCSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCceeeeeccc
Confidence            9999888877664  5778876554

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=90.97  E-value=0.042  Score=43.95  Aligned_cols=120  Identities=13%  Similarity=0.140  Sum_probs=61.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .||.|+|+ |+++++++..+.+ .++.-+-+++++.  +.+..+..   ..+.....++   .     ..++|++|.+|+
T Consensus        18 ~~vlIlGa-GGaarai~~aL~~-~g~~~I~I~nR~~--~ka~~L~~---~~~~~~~~~~---~-----~~~~DliINaTp   82 (167)
T d1npya1          18 AKVIVHGS-GGMAKAVVAAFKN-SGFEKLKIYARNV--KTGQYLAA---LYGYAYINSL---E-----NQQADILVNVTS   82 (167)
T ss_dssp             SCEEEECS-STTHHHHHHHHHH-TTCCCEEEECSCH--HHHHHHHH---HHTCEEESCC---T-----TCCCSEEEECSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHH-CCCCEEEEecccH--HHHHHHHH---hhhhhhhhcc---c-----ccchhhheeccc
Confidence            58999998 9999999998875 4554455676642  22222321   1222222221   1     147899999886


Q ss_pred             ch----hH---HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHH-HHHHHHHHh
Q 022057          116 AS----TV---YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI-LLQQAAISA  179 (303)
Q Consensus       116 p~----a~---~~~~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~-ll~~~a~~~  179 (303)
                      .-    .-   .+.-...+..+ .+|+-- -+++.+ -.+.+.|++.|.+++-      |.- |+.|++.++
T Consensus        83 iGm~~~~~~~~l~~~~~~~~~~-~~v~D~-vY~P~~-T~ll~~A~~~G~~~i~------Gl~Mli~Qa~~~f  145 (167)
T d1npya1          83 IGMKGGKEEMDLAFPKAFIDNA-SVAFDV-VAMPVE-TPFIRYAQARGKQTIS------GAAVIVLQAVEQF  145 (167)
T ss_dssp             TTCTTSTTTTSCSSCHHHHHHC-SEEEEC-CCSSSS-CHHHHHHHHTTCEEEC------HHHHHHHHHHHHH
T ss_pred             cCCccccccccccccHhhcCCc-ceEEEE-eeccCC-CHHHHHHHHCCCeEEE------CHHHHHHHHHHHH
Confidence            21    10   01111223333 344321 122222 1366677888887652      443 345555444

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.95  E-value=0.22  Score=43.61  Aligned_cols=133  Identities=11%  Similarity=0.097  Sum_probs=79.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCC-------CCCeeecCCHHHHHhccc
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQ-------PLEIPVMSDLTMVLGSIS  102 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~~~-------~~gv~v~~dl~~~l~~~~  102 (303)
                      -.+|+|-|+ |++|+..++.+. +.+..++++.|+     +..|-|..++.....       ..+..+.  .++++.   
T Consensus        36 gktvaIqGf-GnVG~~~A~~L~-e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~--~~~~~~---  108 (293)
T d1hwxa1          36 DKTFAVQGF-GNVGLHSMRYLH-RFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIY--EGSILE---  108 (293)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-HTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBC--CSCGGG---
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccC--Cccccc---
Confidence            468999998 999999999887 569999999885     234555544431100       0111122  235554   


Q ss_pred             cCCCccEEEEcCCchhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCCeEEEcCCCcH--HHHHH--HHH
Q 022057          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI--GSILL--QQA  175 (303)
Q Consensus       103 ~~~~~DVvIDfT~p~a~-~~~~~~al~~g~~vVigTT-G-~~~e~~~~L~~~a~~~~i~vv~a~N~Si--Gv~ll--~~~  175 (303)
                        .++||+|=+...... .+++.   +-+..+|++-- + .+++. .+   .-+++|  +++.|-|-.  |.+..  .+.
T Consensus       109 --~~~DIliPaA~~~~I~~~~a~---~l~ak~I~EgAN~P~t~eA-~~---~L~~~g--I~viPD~laNAGGV~vSy~Ew  177 (293)
T d1hwxa1         109 --VDCDILIPAASEKQLTKSNAP---RVKAKIIAEGANGPTTPQA-DK---IFLERN--IMVIPDLYLNAGGVTVSYFQI  177 (293)
T ss_dssp             --CCCSEEEECSSSSCBCTTTGG---GCCCSEEECCSSSCBCHHH-HH---HHHHTT--CEEECHHHHTTHHHHHHHHHH
T ss_pred             --CCccEEeeccccccccHHHHH---HHhhCEEeccCCCCCCcch-HH---HHHHCC--CEEeChhhhcCchHHhHHHHH
Confidence              589999977654443 33444   55888999865 3 55543 22   233444  466676543  22222  344


Q ss_pred             HHHhccCCCc
Q 022057          176 AISASFHYKN  185 (303)
Q Consensus       176 a~~~~~~~~d  185 (303)
                      .+.+..+.|+
T Consensus       178 ~qn~~~~~w~  187 (293)
T d1hwxa1         178 LKNLNHVSYG  187 (293)
T ss_dssp             HHHHHTSCTT
T ss_pred             Hhhhhhcccc
Confidence            5666655554

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.95  E-value=0.13  Score=41.79  Aligned_cols=63  Identities=19%  Similarity=0.155  Sum_probs=42.2

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      ..+++|+|+ |++|+.+++.+. .=++++.+ +|+... .....      ..++. +.++++++.      .+|+|+-..
T Consensus        44 ~k~vgiiG~-G~IG~~va~~~~-~fg~~v~~-~d~~~~-~~~~~------~~~~~-~~~l~ell~------~sDiv~~~~  106 (184)
T d1ygya1          44 GKTVGVVGL-GRIGQLVAQRIA-AFGAYVVA-YDPYVS-PARAA------QLGIE-LLSLDDLLA------RADFISVHL  106 (184)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-TTTCEEEE-ECTTSC-HHHHH------HHTCE-ECCHHHHHH------HCSEEEECC
T ss_pred             ceeeeeccc-cchhHHHHHHhh-hccceEEe-ecCCCC-hhHHh------hcCce-eccHHHHHh------hCCEEEEcC
Confidence            368999998 999999999776 45788765 665321 11111      12232 468999995      699988544

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.85  E-value=0.69  Score=38.79  Aligned_cols=80  Identities=25%  Similarity=0.291  Sum_probs=54.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT  114 (303)
                      ..+.|.|+++.+|+++++.+.+ .+.+|+. .|++.  +.+                  +++.+++  ..++ -+..|.|
T Consensus         6 K~alVTGas~GIG~aia~~la~-~Ga~V~~-~~r~~--~~l------------------~~~~~~~--~~~~~~~~~Dvt   61 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVR-EGARVAI-ADINL--EAA------------------RATAAEI--GPAACAIALDVT   61 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHH-TTEEEEE-EESCH--HHH------------------HHHHHHH--CTTEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHH------------------HHHHHHh--CCceEEEEeeCC
Confidence            4678899999999999998884 6888664 55531  111                  1121110  0122 2456899


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++++-..|
T Consensus        62 ~~~~v~~~~~~~~~~~g~iDilVnnAg   88 (256)
T d1k2wa_          62 DQASIDRCVAELLDRWGSIDILVNNAA   88 (256)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCccEEEeecc
Confidence            999999998888775  6899887665

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.76  E-value=0.8  Score=38.31  Aligned_cols=82  Identities=27%  Similarity=0.393  Sum_probs=52.0

Q ss_pred             eE-EEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           37 KV-IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        37 kV-~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      || .|.|+++++|+.+++.+.+ .+..|+ +.+++.  .++.++.              +++-+.   ..++. +..|.|
T Consensus         2 KValITGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~l~~~~--------------~~i~~~---g~~~~~~~~Dv~   60 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVK-DGFAVA-IADYND--ATAKAVA--------------SEINQA---GGHAVAVKVDVS   60 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEcCCccHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH--------------HHHHhc---CCcEEEEEeeCC
Confidence            66 5679999999999999885 588865 456542  1111111              111110   01222 346889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++...+.+..+.+.  ++++++-..|
T Consensus        61 ~~~~v~~~~~~~~~~~g~iDilVnnAG   87 (255)
T d1gega_          61 DRDQVFAAVEQARKTLGGFDVIVNNAG   87 (255)
T ss_dssp             SHHHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCccEEEeccc
Confidence            999999999888764  5888885544

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=90.75  E-value=1  Score=37.84  Aligned_cols=83  Identities=14%  Similarity=0.187  Sum_probs=52.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      .++.|.|+++.||+++++.++ +.+.+|+. ++++.  .++.+.               .+.+.+  ....+. +..|+|
T Consensus         7 K~alITGas~GIG~aia~~la-~~G~~V~i-~~r~~--~~l~~~---------------~~~~~~--~~~~~~~~~~D~s   65 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELA-GLGARVYT-CSRNE--KELDEC---------------LEIWRE--KGLNVEGSVCDLL   65 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHHHH---------------HHHHHH--TTCCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHH---------------HHHHHh--cCCCceEEEeecC
Confidence            468999999999999999888 46787664 55532  121111               111211  001222 246899


Q ss_pred             CchhHHHHHHHHHHc--C-CCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--G-MRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g-~~vVigTTG  139 (303)
                      .++...+.+..+.+.  | +.+++-..|
T Consensus        66 ~~~~~~~~~~~~~~~~~g~idilinnag   93 (258)
T d1ae1a_          66 SRTERDKLMQTVAHVFDGKLNILVNNAG   93 (258)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCcEEEecccc
Confidence            999999988887764  3 677875444

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.72  E-value=0.46  Score=39.52  Aligned_cols=84  Identities=14%  Similarity=0.135  Sum_probs=52.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEE
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVI  111 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvI  111 (303)
                      |..|.|.|+++++|+.+++.+.+  ..+..|+.. +++.  ..+.               +++++...   ..++. +..
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~-~r~~--~~~~---------------~~~~~~~~---~~~~~~~~~   60 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTT-CRNR--EQAK---------------ELEDLAKN---HSNIHILEI   60 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEE-ESCT--TSCH---------------HHHHHHHH---CTTEEEEEC
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEE-ECCH--HHHH---------------HHHHHHhc---CCcEEEEEE
Confidence            45799999999999999998864  578887764 4432  1111               12232221   02222 355


Q ss_pred             EcCCchhHHHHHHHH---HH-cCCCeEEeCCC
Q 022057          112 DFTDASTVYDNVKQA---TA-FGMRSVVYVPH  139 (303)
Q Consensus       112 DfT~p~a~~~~~~~a---l~-~g~~vVigTTG  139 (303)
                      |.|.++...+.+...   .+ .++++++-..|
T Consensus        61 Dvs~~~~v~~~~~~i~~~~~~~~iDiLvnNAg   92 (248)
T d1snya_          61 DLRNFDAYDKLVADIEGVTKDQGLNVLFNNAG   92 (248)
T ss_dssp             CTTCGGGHHHHHHHHHHHHGGGCCSEEEECCC
T ss_pred             EeccHHHHHHHHhhhHHHhhcCCcceEEeecc
Confidence            889998887777654   23 35888876544

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.62  E-value=0.55  Score=44.13  Aligned_cols=101  Identities=13%  Similarity=0.071  Sum_probs=59.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCee-ecCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIP-VMSD   93 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~~~-----~~g~~~~~gv~-v~~d   93 (303)
                      .||.|+|+ |..|..+++.+. .+|+.=+-++|.+.                .|+.-.+     +..+.....+. +..+
T Consensus        26 s~VlvvG~-gglG~Ei~knLv-l~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~~  103 (529)
T d1yova1          26 AHVCLINA-TATGTEILKNLV-LPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEES  103 (529)
T ss_dssp             CEEEECCC-SHHHHHHHHHHH-TTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESSC
T ss_pred             CCEEEECC-CHHHHHHHHHHH-HhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcCC
Confidence            68999998 999999999987 57775556677421                1111111     11221111222 3345


Q ss_pred             HHHHHhcc-ccCCCccEEEEcCCch-hHHHHHHHHHHcCCCeEEeCC
Q 022057           94 LTMVLGSI-SQSKARAVVIDFTDAS-TVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus        94 l~~~l~~~-~~~~~~DVvIDfT~p~-a~~~~~~~al~~g~~vVigTT  138 (303)
                      +++.++.. .--..+|+||+...+. .....-..|.++++|+|.+-+
T Consensus       104 ~~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~~~  150 (529)
T d1yova1         104 PENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRT  150 (529)
T ss_dssp             HHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             chhhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence            55543210 0002579999887544 446666788899999996644

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=90.45  E-value=0.85  Score=38.20  Aligned_cols=84  Identities=23%  Similarity=0.202  Sum_probs=53.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT  114 (303)
                      ..+.|.|+++++|+.+++.+.+ .+..|+. ++++.  .+..+..              +++.++.  ..++ -+..|.|
T Consensus        10 K~alITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~~~~~~--------------~~~~~~~--g~~~~~~~~Dv~   69 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAA-AGANVAV-IYRSA--ADAVEVT--------------EKVGKEF--GVKTKAYQCDVS   69 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHH-TTEEEEE-EESSC--TTHHHHH--------------HHHHHHH--TCCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHHHh--CCceEEEEccCC
Confidence            4678889999999999999885 6888664 55532  1221111              1221110  0122 2456889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++++-..|
T Consensus        70 ~~~~v~~~~~~~~~~~g~iDilVnnAg   96 (260)
T d1h5qa_          70 NTDIVTKTIQQIDADLGPISGLIANAG   96 (260)
T ss_dssp             CHHHHHHHHHHHHHHSCSEEEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCcEeccccc
Confidence            999999999888765  5787876554

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=90.37  E-value=0.17  Score=39.58  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=25.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~   70 (303)
                      -||+|+|+ |++|..++-.+....- -||+ .+|.+
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elv-L~Di~   35 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYV-FIDAN   35 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSS
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEE-EEecc
Confidence            48999997 9999999987776543 3666 67853

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.32  E-value=0.18  Score=39.47  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHh
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTK   57 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~   57 (303)
                      +|||.|+||+|++|+.++-.+..
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~   25 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGN   25 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHT
T ss_pred             ceEEEEECCCCHHHHHHHHHHHH
Confidence            68999999889999999987764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.27  E-value=0.27  Score=38.47  Aligned_cols=95  Identities=18%  Similarity=0.204  Sum_probs=49.3

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--ee-c--CCHHHHHhccccCCCccEEE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PV-M--SDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v-~--~dl~~~l~~~~~~~~~DVvI  111 (303)
                      +|.|+|++|.+|...+..+......++ -+++++.   +-.+++   .++|.  .+ +  .|+.+.+.+......+|+++
T Consensus        30 ~vlV~G~~G~vG~~~~~~~~~~g~~~V-~~~~~~~---~~~~~~---~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vi  102 (170)
T d1jvba2          30 TLLVVGAGGGLGTMAVQIAKAVSGATI-IGVDVRE---EAVEAA---KRAGADYVINASMQDPLAEIRRITESKGVDAVI  102 (170)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCCEE-EEEESSH---HHHHHH---HHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred             EEEEEeccccceeeeeecccccccccc-cccccch---hhHHHH---HHcCCceeeccCCcCHHHHHHHHhhcccchhhh
Confidence            699999889999999987776543454 4455431   111111   11221  11 1  23322221111123578888


Q ss_pred             EcCCchhHHHHHHHH-HHcCCCeEEeCC
Q 022057          112 DFTDASTVYDNVKQA-TAFGMRSVVYVP  138 (303)
Q Consensus       112 DfT~p~a~~~~~~~a-l~~g~~vVigTT  138 (303)
                      |++..+...+....+ ...|.=+++|.+
T Consensus       103 d~~g~~~~~~~a~~~l~~~G~iv~~G~~  130 (170)
T d1jvba2         103 DLNNSEKTLSVYPKALAKQGKYVMVGLF  130 (170)
T ss_dssp             ESCCCHHHHTTGGGGEEEEEEEEECCSS
T ss_pred             cccccchHHHhhhhhcccCCEEEEeccc
Confidence            888655554444333 344455556554

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=90.26  E-value=0.13  Score=45.53  Aligned_cols=32  Identities=25%  Similarity=0.372  Sum_probs=28.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      |||.|.|++|-+|+.+++.+.++.+.+|++ +|
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~-~D   34 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVI-VD   34 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEE-EE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEE-Ee
Confidence            599999999999999999998888999886 55

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=90.14  E-value=1.1  Score=37.61  Aligned_cols=81  Identities=15%  Similarity=0.169  Sum_probs=52.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---EEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (303)
                      ..+.|.|+++.||+.+++.+.+ .+..|+. .+++.  +++.+..              +++-+     ....   +..|
T Consensus         9 K~alITGas~GIG~aia~~la~-~Ga~V~~-~~r~~--~~l~~~~--------------~~~~~-----~g~~~~~~~~D   65 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELAS-LGASVYT-CSRNQ--KELNDCL--------------TQWRS-----KGFKVEASVCD   65 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHH-----TTCEEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHh-----cCCCceEEEee
Confidence            3578999999999999999885 6888664 55532  1111111              11111     1222   3468


Q ss_pred             cCCchhHHHHHHHHHHc---CCCeEEeCCC
Q 022057          113 FTDASTVYDNVKQATAF---GMRSVVYVPH  139 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~---g~~vVigTTG  139 (303)
                      .|.++...+.+..+.+.   .+++++-..|
T Consensus        66 v~~~~~v~~~~~~~~~~~~~~idilvnnAG   95 (259)
T d2ae2a_          66 LSSRSERQELMNTVANHFHGKLNILVNNAG   95 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCceEEEECCc
Confidence            89999999888877653   3788987665

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.14  E-value=0.1  Score=43.07  Aligned_cols=32  Identities=25%  Similarity=0.444  Sum_probs=27.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      |||+++|. +..|..+.+.+.+ .++++++++..
T Consensus         1 MkI~~~G~-~~~~~~~l~~L~~-~~~~i~~V~t~   32 (203)
T d2bw0a2           1 MKIAVIGQ-SLFGQEVYCHLRK-EGHEVVGVFTV   32 (203)
T ss_dssp             CEEEEECC-HHHHHHHHHHHHH-TTCEEEEEEEC
T ss_pred             CEEEEEcC-CHHHHHHHHHHHH-CCCcEEEEEcC
Confidence            79999996 9999999998875 58999999863

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.99  E-value=0.19  Score=43.11  Aligned_cols=32  Identities=25%  Similarity=0.289  Sum_probs=27.5

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      .++.|.|++|-+|+.+++.+.+ .+.+++++..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~-~g~~V~~~~r   33 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLG-KGYEVHGLIR   33 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CEEEEeCCccHHHHHHHHHHHH-CcCEEEEEEC
Confidence            4788999999999999999986 6899987654

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.89  E-value=0.59  Score=39.97  Aligned_cols=85  Identities=14%  Similarity=0.137  Sum_probs=50.3

Q ss_pred             eEEE-EcCCcHHHHHHHHHHHhcCCcEE--EEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccc-cCCCcc-EEE
Q 022057           37 KVII-NGAVKEIGRAAVIAVTKARGMEV--AGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSIS-QSKARA-VVI  111 (303)
Q Consensus        37 kV~V-~G~~GrMG~~i~~~i~~~~~~eL--vg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~-~~~~~D-VvI  111 (303)
                      ||+| .|+++++|+.+++.+.+ .+..+  +....++.  +....               +++..+++. ...++. +..
T Consensus         3 kVvlITGassGIG~a~A~~la~-~Ga~v~~v~~~~~~~--~~~~~---------------l~~~~~~~~~~~~~~~~~~~   64 (285)
T d1jtva_           3 TVVLITGCSSGIGLHLAVRLAS-DPSQSFKVYATLRDL--KTQGR---------------LWEAARALACPPGSLETLQL   64 (285)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHT-CTTCCEEEEEEESCG--GGTHH---------------HHHHHHHTTCCTTSEEEEEC
T ss_pred             CEEEEccCCCHHHHHHHHHHHH-CCCCeEEEEEecCCh--hhhHH---------------HHHHHHHHhccCCceEEEec
Confidence            6665 49999999999998885 55553  33333321  11111               112211100 001222 346


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCCC
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVPH  139 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTTG  139 (303)
                      |.|.++...+.+..+.+.++++++-..|
T Consensus        65 Dv~~~~~~~~~~~~~~~g~idilvnnag   92 (285)
T d1jtva_          65 DVRDSKSVAAARERVTEGRVDVLVCNAG   92 (285)
T ss_dssp             CTTCHHHHHHHHHTCTTSCCSEEEECCC
T ss_pred             cccchHhhhhhhhhccccchhhhhhccc
Confidence            8899999988888877777888876654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=89.77  E-value=1.1  Score=34.15  Aligned_cols=120  Identities=14%  Similarity=0.197  Sum_probs=61.7

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCC--CCcchhhhhcCCCCCCeee-c---CCHHHHHhccccCCCccEE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~--~g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVv  110 (303)
                      .|.|+|+ |++|+.+++.+.+. +.+++. +|.+.  .-....+..    ..++.+ +   .+.+-+...  .-.++|++
T Consensus         5 HiII~G~-g~~g~~l~~~L~~~-~~~v~v-Id~d~~~~~~~~~~~~----~~~~~vi~Gd~~d~~~L~~a--~i~~a~~v   75 (153)
T d1id1a_           5 HFIVCGH-SILAINTILQLNQR-GQNVTV-ISNLPEDDIKQLEQRL----GDNADVIPGDSNDSSVLKKA--GIDRCRAI   75 (153)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHT-TCCEEE-EECCCHHHHHHHHHHH----CTTCEEEESCTTSHHHHHHH--TTTTCSEE
T ss_pred             EEEEECC-CHHHHHHHHHHHHc-CCCEEE-EeccchhHHHHHHHhh----cCCcEEEEccCcchHHHHHh--ccccCCEE
Confidence            5899998 99999999998854 666664 44321  000111111    234443 2   233222111  12468888


Q ss_pred             EEcCCchhH-HHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHH
Q 022057          111 IDFTDASTV-YDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (303)
Q Consensus       111 IDfT~p~a~-~~~~~~al~~--g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll  172 (303)
                      |-.|.-+.. ...+..+.+.  .+++|.-+  .+++..+.+    ++.|+..+++|.. ++...|
T Consensus        76 i~~~~~d~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l----~~~Gad~vi~p~~-~~~~~l  133 (153)
T d1id1a_          76 LALSDNDADNAFVVLSAKDMSSDVKTVLAV--SDSKNLNKI----KMVHPDIILSPQL-FGSEIL  133 (153)
T ss_dssp             EECSSCHHHHHHHHHHHHHHTSSSCEEEEC--SSGGGHHHH----HTTCCSEEECHHH-HHHHHH
T ss_pred             EEccccHHHHHHHHHHHHHhCCCCceEEEE--cCHHHHHHH----HHCCCCEEECHHH-HHHHHH
Confidence            866654433 3333444443  33555433  333333334    4456777888743 444433

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=89.75  E-value=1.8  Score=36.62  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=20.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKA   58 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~   58 (303)
                      |||.|.|++|-+|+.+++.+.++
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~   23 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAG   23 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC
Confidence            69999999999999999988763

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=89.65  E-value=0.8  Score=38.28  Aligned_cols=82  Identities=17%  Similarity=0.135  Sum_probs=52.2

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      ..+.|.|++++||+.+++.+.+ .+..|+ +.+++.  +.+.+.               .+.+..   ..++. +..|.|
T Consensus         7 K~alVTGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~~~~~---------------~~~~~~---~~~~~~~~~Dv~   64 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVE-EGAKVM-ITGRHS--DVGEKA---------------AKSVGT---PDQIQFFQHDSS   64 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHH---------------HHHHCC---TTTEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHH---------------HHHhCC---CCcEEEEEccCC
Confidence            3577889999999999998874 688865 455531  111111               111210   11222 345889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++++-..|
T Consensus        65 ~~~~v~~~~~~~~~~~G~iDiLVnnAg   91 (251)
T d1zk4a1          65 DEDGWTKLFDATEKAFGPVSTLVNNAG   91 (251)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCceEEEeccc
Confidence            999998888887764  6888886544

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=89.57  E-value=1.3  Score=37.08  Aligned_cols=80  Identities=19%  Similarity=0.243  Sum_probs=52.2

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---EEEEc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDf  113 (303)
                      .+.|.|+++.+|+.+++.+.+ .+..|+ ++|++.  +.+.+.               .+.+.+    ...+   +..|.
T Consensus         7 ~alITGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~l~~~---------------~~~~~~----~g~~~~~~~~Dv   63 (260)
T d1zema1           7 VCLVTGAGGNIGLATALRLAE-EGTAIA-LLDMNR--EALEKA---------------EASVRE----KGVEARSYVCDV   63 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHH---------------HHHHHT----TTSCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHH---------------HHHHHh----cCCcEEEEEccC
Confidence            577889999999999999874 688865 466542  111111               111211    2222   35688


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      |.++.+.+.+..+.+.  ++++++-..|
T Consensus        64 ~~~~~v~~~~~~~~~~~g~iDilVnnaG   91 (260)
T d1zema1          64 TSEEAVIGTVDSVVRDFGKIDFLFNNAG   91 (260)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCeehhhhc
Confidence            9999999988887665  6888885443

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.41  E-value=1.1  Score=37.53  Aligned_cols=82  Identities=16%  Similarity=0.190  Sum_probs=53.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE---EEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---vID  112 (303)
                      .++.|.|+++.+|+++++.+.+ .+.+|+. .+++.. +.+.++               .+.+.+    ...++   ..|
T Consensus        19 K~~lITGas~GIG~aia~~la~-~Ga~Vvi-~~~~~~-~~~~~~---------------~~~~~~----~g~~~~~~~~D   76 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGR-RGCKVIV-NYANST-ESAEEV---------------VAAIKK----NGSDAACVKAN   76 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEE-EESSCH-HHHHHH---------------HHHHHH----TTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-cCCEEEE-EeCCch-HHHHHH---------------HHHHHh----hCCceeeEeCC
Confidence            4788999999999999999885 6888764 443210 111111               111211    23333   347


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .+.++.+.+.+..+.+.  ++++++-..|
T Consensus        77 ~~~~~~v~~~~~~~~~~~g~idilV~nag  105 (272)
T d1g0oa_          77 VGVVEDIVRMFEEAVKIFGKLDIVCSNSG  105 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCccccccc
Confidence            88999999988877664  6788887765

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.18  E-value=0.96  Score=37.77  Aligned_cols=79  Identities=23%  Similarity=0.260  Sum_probs=51.7

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcCC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFTD  115 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT~  115 (303)
                      .+.|.|+++.+|+++++.+. ..+.+|+. .+++.  +.+.++.              ++ +.     ..+ -+..|.|.
T Consensus         8 ~alITGas~GIG~aia~~la-~~G~~V~~-~~r~~--~~~~~~~--------------~~-~~-----~~~~~~~~Dv~~   63 (244)
T d1nffa_           8 VALVSGGARGMGASHVRAMV-AEGAKVVF-GDILD--EEGKAMA--------------AE-LA-----DAARYVHLDVTQ   63 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHHHHH--------------HH-TG-----GGEEEEECCTTC
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHHH--------------HH-hh-----CcceEEEeecCC
Confidence            46778999999999999888 46888764 55532  1111111              11 11     112 24468899


Q ss_pred             chhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       116 p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      ++.+.+.++.+.+.  ++++++-..|
T Consensus        64 ~~~v~~~~~~~~~~~g~idilinnAG   89 (244)
T d1nffa_          64 PAQWKAAVDTAVTAFGGLHVLVNNAG   89 (244)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEECCc
Confidence            99998888877764  5888876655

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.13  E-value=1.6  Score=36.44  Aligned_cols=82  Identities=15%  Similarity=0.244  Sum_probs=54.4

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE---EEEc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VIDF  113 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---vIDf  113 (303)
                      .+.|.|+++++|+.+++.+.+ .+..++. .+++.  .++.+++              +++-+.   ..+..+   ..|.
T Consensus        12 v~lITGas~GIG~aiA~~la~-~G~~Vv~-~~r~~--~~l~~~~--------------~~l~~~---~~~~~~~~~~~Dl   70 (257)
T d1xg5a_          12 LALVTGASGGIGAAVARALVQ-QGLKVVG-CARTV--GNIEELA--------------AECKSA---GYPGTLIPYRCDL   70 (257)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCSSEEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHhc---CCCceEEEEEccC
Confidence            488999999999999999885 6888765 44431  1222111              112110   012233   3588


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      |.++.+.+.+..+.+.  ++++++=..|
T Consensus        71 s~~~~v~~~v~~~~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          71 SNEEDILSMFSAIRSQHSGVDICINNAG   98 (257)
T ss_dssp             TCHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEeccc
Confidence            9999999999888876  6888887665

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.07  E-value=1.9  Score=36.89  Aligned_cols=86  Identities=16%  Similarity=0.186  Sum_probs=53.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---EEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (303)
                      ..+.|.|+++++|+.+++.+.+ .+..|+. .+++.  ..+.+.+              +++.+.........   +..|
T Consensus        13 KvalITGas~GIG~aia~~la~-~Ga~Vvi-~~r~~--~~l~~~~--------------~el~~~~~~~~~~~~~~~~~D   74 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLE-LGSNVVI-ASRKL--ERLKSAA--------------DELQANLPPTKQARVIPIQCN   74 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHTSCTTCCCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHhhhccccCceEEEEecc
Confidence            4588999999999999999885 6888664 55531  1111111              11111000001222   3458


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .|.++.+.+.+..+.+.  ++++++=..|
T Consensus        75 vs~~~~v~~~~~~~~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          75 IRNEEEVNNLVKSTLDTFGKINFLVNNGG  103 (297)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCeEEEEeecc
Confidence            89999999998888764  6888886544

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=89.06  E-value=1.3  Score=36.89  Aligned_cols=78  Identities=23%  Similarity=0.256  Sum_probs=51.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      ..+.|.|++++||+.+++.+. +.+..|+ +.+++.   +..+.+               +.+.      ..-+-.|.|.
T Consensus         6 K~alITGas~GIG~aia~~la-~~G~~V~-~~~~~~---~~~~~~---------------~~~~------~~~~~~Dv~~   59 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFA-REGALVA-LCDLRP---EGKEVA---------------EAIG------GAFFQVDLED   59 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEE-EEESST---THHHHH---------------HHHT------CEEEECCTTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCH---HHHHHH---------------HHcC------CeEEEEeCCC
Confidence            357889999999999999988 4678765 455542   111111               1111      1124568899


Q ss_pred             chhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       116 p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      ++...+.+..+.+.  ++++++-..|
T Consensus        60 ~~~v~~~~~~~~~~~G~iDiLVnnAG   85 (248)
T d2d1ya1          60 ERERVRFVEEAAYALGRVDVLVNNAA   85 (248)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeCc
Confidence            99998888877765  5888885544

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.02  E-value=0.13  Score=40.37  Aligned_cols=25  Identities=20%  Similarity=0.480  Sum_probs=22.4

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKAR   59 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~   59 (303)
                      +|||.|+||+|++|+.++-.+...+
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcc
Confidence            6999999999999999999888654

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.97  E-value=1.4  Score=37.86  Aligned_cols=89  Identities=25%  Similarity=0.230  Sum_probs=53.1

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCCc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p  116 (303)
                      .+.|.|+++++|+.+++.+. ..++.++ +.|...   +.....        .....++++.+++ ......+..|.+.+
T Consensus         9 valITGas~GIG~aiA~~la-~~Ga~Vv-i~d~~~---~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~d~~~~   74 (302)
T d1gz6a_           9 VVLVTGAGGGLGRAYALAFA-ERGALVV-VNDLGG---DFKGVG--------KGSSAADKVVEEI-RRRGGKAVANYDSV   74 (302)
T ss_dssp             EEEETTTTSHHHHHHHHHHH-HTTCEEE-EECCCB---CTTSCB--------CCSHHHHHHHHHH-HHTTCEEEEECCCG
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HcCCEEE-EEeCCc---hhhhhh--------hhHHHHHHHHHHH-hhcccccccccchH
Confidence            47788999999999999888 5688765 455421   000000        0001112222110 01345678889988


Q ss_pred             hhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          117 STVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       117 ~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      +...+.+..+.+.  +++++|-.-|
T Consensus        75 ~~~~~~v~~~~~~~G~iDiLVnNAG   99 (302)
T d1gz6a_          75 EAGEKLVKTALDTFGRIDVVVNNAG   99 (302)
T ss_dssp             GGHHHHHHHHHHHTSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCc
Confidence            8888888877764  5888875544

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=88.64  E-value=0.77  Score=38.65  Aligned_cols=82  Identities=22%  Similarity=0.219  Sum_probs=52.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      ..+.|.|+++++|+.+++.+.+ .+.+|+ ++|++.  ..+.++.               +.+..   ..... +..|.|
T Consensus         7 KvalITGas~GIG~aia~~la~-~Ga~V~-i~~r~~--~~~~~~~---------------~~l~~---~~~~~~~~~Dv~   64 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVR-YGAKVV-IADIAD--DHGQKVC---------------NNIGS---PDVISFVHCDVT   64 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHHH---------------HHHCC---TTTEEEEECCTT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH---------------HHhcC---CCceEEEEccCC
Confidence            3577889999999999999874 688865 456542  1111111               11110   01122 345889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++++-..|
T Consensus        65 ~~~~v~~~~~~~~~~~g~iD~lVnnAG   91 (268)
T d2bgka1          65 KDEDVRNLVDTTIAKHGKLDIMFGNVG   91 (268)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCcceeccccc
Confidence            999998888877765  6888885443

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=88.54  E-value=0.89  Score=37.85  Aligned_cols=80  Identities=20%  Similarity=0.362  Sum_probs=52.8

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCCc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~p  116 (303)
                      .+.|.|++++||+.+++.+.+ .+..++. .+++.  +.+.++               .+.+..    ...-+..|.|.+
T Consensus         6 ~alITGas~GIG~a~a~~l~~-~G~~Vv~-~~r~~--~~l~~~---------------~~~~~~----~~~~~~~Dv~~~   62 (243)
T d1q7ba_           6 IALVTGASRGIGRAIAETLAA-RGAKVIG-TATSE--NGAQAI---------------SDYLGA----NGKGLMLNVTDP   62 (243)
T ss_dssp             EEEESSCSSHHHHHHHHHHHH-TTCEEEE-EESSH--HHHHHH---------------HHHHGG----GEEEEECCTTCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-cCCEEEE-EeCCH--HHHHHH---------------HHHhCC----CCcEEEEEecCH
Confidence            466779999999999999884 6888764 55532  111111               111210    112356789999


Q ss_pred             hhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          117 STVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       117 ~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      +...+.+..+.+.  ++++++-..|
T Consensus        63 ~~v~~~~~~~~~~~g~iDilVnnAg   87 (243)
T d1q7ba_          63 ASIESVLEKIRAEFGEVDILVNNAG   87 (243)
T ss_dssp             HHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred             HHhhhhhhhhhcccCCcceehhhhh
Confidence            9999888888765  5888886654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.51  E-value=0.53  Score=36.25  Aligned_cols=127  Identities=16%  Similarity=0.155  Sum_probs=63.7

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee---c--CCHHHHHhccccCCCccEEE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---M--SDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v---~--~dl~~~l~~~~~~~~~DVvI  111 (303)
                      +|.|.|+ |.+|...+..+. ..+.++++ ++.+.  .... ++   +++|...   +  .++.+.+...  ..+.|.+|
T Consensus        30 ~vlv~G~-G~iG~~a~~~a~-~~g~~v~~-~~~~~--~r~~-~~---k~~Ga~~~~~~~~~~~~~~~~~~--~~~~~~~v   98 (168)
T d1rjwa2          30 WVAIYGI-GGLGHVAVQYAK-AMGLNVVA-VDIGD--EKLE-LA---KELGADLVVNPLKEDAAKFMKEK--VGGVHAAV   98 (168)
T ss_dssp             EEEEECC-STTHHHHHHHHH-HTTCEEEE-ECSCH--HHHH-HH---HHTTCSEEECTTTSCHHHHHHHH--HSSEEEEE
T ss_pred             EEEEeec-ccchhhhhHHHh-cCCCeEec-cCCCH--HHhh-hh---hhcCcceecccccchhhhhcccc--cCCCceEE
Confidence            6899997 999999887666 56778654 44321  1111 11   1233211   1  2444433211  13456666


Q ss_pred             EcCCchhHHHHHHHHHH-cCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHh
Q 022057          112 DFTDASTVYDNVKQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~-~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~  179 (303)
                      +++......+....+++ .|+=+++|.++-+. ......-.-+  ++.++-+.+++.  ..+.++.+.+
T Consensus        99 ~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~~~-~~~~~~~~~~--~~~i~gs~~~~~--~~~~~~l~l~  162 (168)
T d1rjwa2          99 VTAVSKPAFQSAYNSIRRGGACVLVGLPPEEM-PIPIFDTVLN--GIKIIGSIVGTR--KDLQEALQFA  162 (168)
T ss_dssp             ESSCCHHHHHHHHHHEEEEEEEEECCCCSSEE-EEEHHHHHHT--TCEEEECCSCCH--HHHHHHHHHH
T ss_pred             eecCCHHHHHHHHHHhccCCceEecccccCCC-CCCHHHHHHC--CcEEEEEeeCCH--HHHHHHHHHH
Confidence            77755555555555554 45555555543211 1111122233  367666555543  3466665544

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=88.13  E-value=0.16  Score=40.91  Aligned_cols=97  Identities=7%  Similarity=0.045  Sum_probs=50.9

Q ss_pred             EEEE-cCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee---ecC-----CHHHHHhccc--cCCC
Q 022057           38 VIIN-GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP---VMS-----DLTMVLGSIS--QSKA  106 (303)
Q Consensus        38 V~V~-G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~---v~~-----dl~~~l~~~~--~~~~  106 (303)
                      |.|+ |++|.+|+..++... .-++++++++..+..-++..+.+   .++|..   .++     ++.+.+.+..  ....
T Consensus        32 vli~~ga~g~vG~~aiqlAk-~~Ga~vI~~v~~~~~~~~~~~~~---~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          32 WFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASL---KELGATQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             EEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHH---HHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             EEEEeCCCchHHHHHHHHHh-hcCCeEEEEEecccccchHHhhh---hhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence            6665 778999999998665 46899999886532111111111   122221   111     1111111000  0134


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       107 ~DVvIDfT~p~a~~~~~~~al~~g~~vVigTT  138 (303)
                      +|+++|+...+.....+......|.=+++|.+
T Consensus       108 vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~~  139 (189)
T d1gu7a2         108 AKLALNCVGGKSSTGIARKLNNNGLMLTYGGM  139 (189)
T ss_dssp             EEEEEESSCHHHHHHHHHTSCTTCEEEECCCC
T ss_pred             ceEEEECCCcchhhhhhhhhcCCcEEEEECCc
Confidence            78888887766666665555555555556643

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=88.12  E-value=0.19  Score=42.50  Aligned_cols=111  Identities=9%  Similarity=0.150  Sum_probs=67.5

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      -.+|+|-|+ |++|+.+++.+. +.+..++. +|.+.  .....+..   ..+.. ..+.++++.     .++||++=+.
T Consensus        39 g~~v~IqG~-GnVG~~~a~~L~-~~Gakvv~-~d~~~--~~~~~~~~---~~g~~-~~~~~~~~~-----~~cDIl~PcA  104 (230)
T d1leha1          39 GLAVSVQGL-GNVAKALCKKLN-TEGAKLVV-TDVNK--AAVSAAVA---EEGAD-AVAPNAIYG-----VTCDIFAPCA  104 (230)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-HTTCEEEE-ECSCH--HHHHHHHH---HHCCE-ECCGGGTTT-----CCCSEEEECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HCCCEEEe-ecccH--HHHHHHHH---hcCCc-ccCCccccc-----ccccEecccc
Confidence            368999998 999999999887 46898885 34321  11111211   12222 234566765     6899999887


Q ss_pred             CchhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCCeEEEcCCCcH
Q 022057          115 DASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (303)
Q Consensus       115 ~p~a~-~~~~~~al~~g~~vVigTT--G~~~e~~~~L~~~a~~~~i~vv~a~N~Si  167 (303)
                      ..... .+++.   +-+..+|+|-.  +++..+..+   .-+++  .+++.|-|-.
T Consensus       105 ~~~~I~~~~~~---~l~ak~Ive~ANn~~t~~ea~~---~L~~r--GI~~iPD~la  152 (230)
T d1leha1         105 LGAVLNDFTIP---QLKAKVIAGSADNQLKDPRHGK---YLHEL--GIVYAPDYVI  152 (230)
T ss_dssp             CSCCBSTTHHH---HCCCSEECCSCSCCBSSHHHHH---HHHHH--TCEECCHHHH
T ss_pred             cccccChHHhh---ccCccEEEecccCCCCCchHHH---HHHhh--CcEEEeehhh
Confidence            65554 44444   55788999876  455323222   22333  4577787643

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.10  E-value=1.8  Score=34.10  Aligned_cols=73  Identities=18%  Similarity=0.140  Sum_probs=42.0

Q ss_pred             ceeEEEEcCCcH--HHHHHHHHHHhcCCc---EEEEEEecCCC---Ccchhh-----hhcCCCCCCeeecCCHHHHHhcc
Q 022057           35 NIKVIINGAVKE--IGRAAVIAVTKARGM---EVAGAIDSHSV---GEDIGM-----VCDMEQPLEIPVMSDLTMVLGSI  101 (303)
Q Consensus        35 ~ikV~V~G~~Gr--MG~~i~~~i~~~~~~---eLvg~vd~~~~---g~d~~~-----~~g~~~~~gv~v~~dl~~~l~~~  101 (303)
                      +|||+|+|+ |.  .+..++..+...+.+   || ..+|.++.   ++....     +.+...+..+..++|..+.+   
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI-~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al---   75 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGEL-WLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRAL---   75 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEE-EEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH---
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEE-EEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhc---
Confidence            489999998 84  456677777766653   44 46775320   111110     11111223344577888877   


Q ss_pred             ccCCCccEEEEcCC
Q 022057          102 SQSKARAVVIDFTD  115 (303)
Q Consensus       102 ~~~~~~DVvIDfT~  115 (303)
                         .++|+||....
T Consensus        76 ---~gaDvVv~ta~   86 (169)
T d1s6ya1          76 ---DGADFVTTQFR   86 (169)
T ss_dssp             ---TTCSEEEECCC
T ss_pred             ---CCCCEEEEccc
Confidence               47899986553

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.04  E-value=0.32  Score=38.99  Aligned_cols=98  Identities=10%  Similarity=0.155  Sum_probs=59.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .+++|+|+ |++|+.+++.+.. -++.++ ++|.+.. +.+....     .|.. ..++++++      ...|++|-.|-
T Consensus        25 k~v~V~Gy-G~iG~g~A~~~rg-~G~~V~-v~e~dp~-~al~A~~-----dG~~-v~~~~~a~------~~adivvtaTG   88 (163)
T d1li4a1          25 KVAVVAGY-GDVGKGCAQALRG-FGARVI-ITEIDPI-NALQAAM-----EGYE-VTTMDEAC------QEGNIFVTTTG   88 (163)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCHH-HHHHHHH-----TTCE-ECCHHHHT------TTCSEEEECSS
T ss_pred             CEEEEecc-ccccHHHHHHHHh-CCCeeE-eeecccc-hhHHhhc-----CceE-eeehhhhh------hhccEEEecCC
Confidence            57999997 9999999998774 577665 4554320 1111111     1222 23577777      47899887773


Q ss_pred             -chhH-HHHHHHHHHcCCCeEEeCCC-CCHH-HHHHHHHHh
Q 022057          116 -ASTV-YDNVKQATAFGMRSVVYVPH-IQLE-TVSALSAFC  152 (303)
Q Consensus       116 -p~a~-~~~~~~al~~g~~vVigTTG-~~~e-~~~~L~~~a  152 (303)
                       +... .++++   +.+-.++++..| |+.| +.+.|++.+
T Consensus        89 n~~vI~~eh~~---~MKdgaIL~N~Ghfd~EId~~~L~~~~  126 (163)
T d1li4a1          89 CIDIILGRHFE---QMKDDAIVCNIGHFDVEIDVKWLNENA  126 (163)
T ss_dssp             CSCSBCHHHHT---TCCTTEEEEECSSSTTSBCHHHHHHHC
T ss_pred             CccchhHHHHH---hccCCeEEEEeccccceecHHHHhhcc
Confidence             3333 55554   566667777765 5443 455666654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=87.93  E-value=1.7  Score=36.22  Aligned_cols=81  Identities=19%  Similarity=0.144  Sum_probs=53.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---EEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (303)
                      ..+.|.|+++++|+++++.+. ..+..|+. .+++.  +.+.++.              +++-+     ...+   +..|
T Consensus        12 K~alITGas~GIG~aia~~la-~~Ga~V~~-~~r~~--~~~~~~~--------------~~l~~-----~g~~~~~~~~D   68 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFA-TAGASVVV-SDINA--DAANHVV--------------DEIQQ-----LGGQAFACRCD   68 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHH-TTTCEEEE-EESCH--HHHHHHH--------------HHHHH-----TTCCEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHHH--------------HHHHH-----cCCcEEEEEcc
Confidence            467889999999999999887 56888764 55532  1111111              11111     1222   3568


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .|.++...+.+..+.+.  ++++++-..|
T Consensus        69 vs~~~~~~~~~~~~~~~~g~iDilvnnAG   97 (255)
T d1fmca_          69 ITSEQELSALADFAISKLGKVDILVNNAG   97 (255)
T ss_dssp             TTCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEeeeCCc
Confidence            89999998888887775  6888987765

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.90  E-value=1.8  Score=36.16  Aligned_cols=84  Identities=13%  Similarity=0.111  Sum_probs=54.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT  114 (303)
                      ..+.|.|+++++|+.+++.+.+ .+..|+. ++++.  .++.+..              +++-+.   ..++ -+..|.|
T Consensus         9 K~alVTGas~GIG~aiA~~la~-~Ga~V~~-~~r~~--~~l~~~~--------------~~~~~~---~~~~~~~~~Dv~   67 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAG-FGAVIHT-CARNE--YELNECL--------------SKWQKK---GFQVTGSVCDAS   67 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHhc---CCceEEEeccCC
Confidence            5688999999999999999885 6887765 55532  1111111              111110   0122 2345889


Q ss_pred             CchhHHHHHHHHHHc--C-CCeEEeCCCC
Q 022057          115 DASTVYDNVKQATAF--G-MRSVVYVPHI  140 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g-~~vVigTTG~  140 (303)
                      .++...+.+..+.+.  | +++++-..|.
T Consensus        68 ~~~~v~~~~~~~~~~~~g~idilvnnAG~   96 (259)
T d1xq1a_          68 LRPEREKLMQTVSSMFGGKLDILINNLGA   96 (259)
T ss_dssp             SHHHHHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCcccccccccc
Confidence            999998888877664  4 7888876653

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=87.82  E-value=2.2  Score=35.28  Aligned_cols=80  Identities=19%  Similarity=0.203  Sum_probs=52.7

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcCC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFTD  115 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT~  115 (303)
                      .+.|.|+++.||+.+++.+. ..+..++. .|++.. +..                  ++.+++.  ..++ =+..|.|.
T Consensus         7 valVTGas~GIG~aia~~la-~~Ga~V~~-~~~~~~-~~~------------------~~~~~~~--g~~~~~~~~Dvs~   63 (247)
T d2ew8a1           7 LAVITGGANGIGRAIAERFA-VEGADIAI-ADLVPA-PEA------------------EAAIRNL--GRRVLTVKCDVSQ   63 (247)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEEE-EESSCC-HHH------------------HHHHHHT--TCCEEEEECCTTC
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCch-HHH------------------HHHHHHc--CCcEEEEEeeCCC
Confidence            47788999999999999987 56887664 455321 111                  1122110  0122 23558899


Q ss_pred             chhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       116 p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      ++.+.+.+..+.+.  ++++++-..|
T Consensus        64 ~~~v~~~~~~~~~~~G~iDilVnnAG   89 (247)
T d2ew8a1          64 PGDVEAFGKQVISTFGRCDILVNNAG   89 (247)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            99999988888775  6899887655

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.67  E-value=0.81  Score=38.37  Aligned_cols=81  Identities=15%  Similarity=0.120  Sum_probs=51.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      ..+.|.|+++.+|+.+++.+.+ .+..++ +.|++.  ..+.++               .+.+..    ...-+..|.+.
T Consensus         7 K~alITGas~GIG~aia~~la~-~Ga~V~-~~~~~~--~~~~~~---------------~~~~~~----~~~~~~~Dv~~   63 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLG-EGAKVA-FSDINE--AAGQQL---------------AAELGE----RSMFVRHDVSS   63 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHH---------------HHHHCT----TEEEECCCTTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHH---------------HHHhCC----CeEEEEeecCC
Confidence            3577789999999999999884 688865 455431  111111               111110    11233457888


Q ss_pred             chhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       116 p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      ++...+.+..+.+.  ++++++-..|
T Consensus        64 ~~~~~~~~~~~~~~~g~iDilVnnAG   89 (253)
T d1hxha_          64 EADWTLVMAAVQRRLGTLNVLVNNAG   89 (253)
T ss_dssp             HHHHHHHHHHHHHHHCSCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHhCCCCeEEeccc
Confidence            99888888877664  6788887765

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.58  E-value=0.2  Score=44.15  Aligned_cols=89  Identities=10%  Similarity=-0.027  Sum_probs=54.6

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT  114 (303)
                      .-.++|+|+ |.+++.+++++.....++=+-+++++.  ..+..++...+..++.+..+.++.+      .++||||-+|
T Consensus       125 ~~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~--e~~~~~~~~~~~~~~~~~~~~~~a~------~~aDiV~taT  195 (320)
T d1omoa_         125 SSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVRE--KAAKKFVSYCEDRGISASVQPAEEA------SRCDVLVTTT  195 (320)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSH--HHHHHHHHHHHHTTCCEEECCHHHH------TSSSEEEECC
T ss_pred             ccEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCH--HHHHHHHHHHHhcCCccccchhhhh------ccccEEEEec
Confidence            357999997 999999999998766677777887642  2222222111123444555566666      4799998666


Q ss_pred             C-chhHHHHHHHHHHcCCCeE
Q 022057          115 D-ASTVYDNVKQATAFGMRSV  134 (303)
Q Consensus       115 ~-p~a~~~~~~~al~~g~~vV  134 (303)
                      + .+.+.+  ...++.|.++.
T Consensus       196 ~s~~P~~~--~~~l~~G~hv~  214 (320)
T d1omoa_         196 PSRKPVVK--AEWVEEGTHIN  214 (320)
T ss_dssp             CCSSCCBC--GGGCCTTCEEE
T ss_pred             cCcccccc--hhhcCCCCeEe
Confidence            3 222211  12356777665

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.21  E-value=0.24  Score=42.85  Aligned_cols=33  Identities=21%  Similarity=0.239  Sum_probs=27.9

Q ss_pred             CceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEE
Q 022057           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (303)
Q Consensus        34 ~~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~v   67 (303)
                      |.-||.|.|++|-+|+.+++.+.+ .+.+++++-
T Consensus         1 M~kKILITG~tGfIGs~lv~~Ll~-~g~~V~~ld   33 (346)
T d1ek6a_           1 MAEKVLVTGGAGYIGSHTVLELLE-AGYLPVVID   33 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHH-CcCEEEEEE
Confidence            456899999999999999999985 478888753

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.17  E-value=1.4  Score=36.84  Aligned_cols=86  Identities=20%  Similarity=0.234  Sum_probs=52.5

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcCC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT~  115 (303)
                      .+.|.|+++.+|+.+++.+. ..+.+|+ +.+++.  ..+.+..              +++.+.-....++. +..|.|.
T Consensus         7 valVTGas~GIG~aia~~la-~~Ga~V~-~~~r~~--~~l~~~~--------------~~l~~~~~~~~~~~~~~~Dvt~   68 (264)
T d1spxa_           7 VAIITGSSNGIGRATAVLFA-REGAKVT-ITGRHA--ERLEETR--------------QQILAAGVSEQNVNSVVADVTT   68 (264)
T ss_dssp             EEEETTTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHHH--------------HHHHHTTCCGGGEEEEECCTTS
T ss_pred             EEEEeCcCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHHH--------------HHHHhcCCCcCceEEEEccCCC
Confidence            35677999999999999887 4688865 456542  1111111              11111000000121 3568999


Q ss_pred             chhHHHHHHHHHHc--CCCeEEeCCCC
Q 022057          116 ASTVYDNVKQATAF--GMRSVVYVPHI  140 (303)
Q Consensus       116 p~a~~~~~~~al~~--g~~vVigTTG~  140 (303)
                      ++...+.+..+.+.  ++++++-..|.
T Consensus        69 ~~~v~~~~~~~~~~~g~iDilvnnAG~   95 (264)
T d1spxa_          69 DAGQDEILSTTLGKFGKLDILVNNAGA   95 (264)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC-
T ss_pred             HHHHHHHHHHHHHHhCCCCEeeccccc
Confidence            99999988888764  68998876653

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=86.69  E-value=1.5  Score=36.75  Aligned_cols=80  Identities=20%  Similarity=0.168  Sum_probs=52.4

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT  114 (303)
                      ..+.|.|++++||+.+++.+.+ .++.++ +.|++.  +++                  +++.+++  ..++. +..|.|
T Consensus         6 K~alVTGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~~------------------~~~~~~~--~~~~~~~~~Dv~   61 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVA-AGARVV-LADVLD--EEG------------------AATAREL--GDAARYQHLDVT   61 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHH------------------HHHHHTT--GGGEEEEECCTT
T ss_pred             CEEEEeCcCCHHHHHHHHHHHH-CCCEEE-EEECCH--HHH------------------HHHHHHh--CCceEEEEcccC
Confidence            3588999999999999999885 688865 455532  111                  1222110  01122 356789


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++...+.+..+.+.  ++++++=.-|
T Consensus        62 ~~~~v~~~~~~~~~~~g~iDilVnnAg   88 (254)
T d1hdca_          62 IEEDWQRVVAYAREEFGSVDGLVNNAG   88 (254)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCccEEEecCc
Confidence            999998888877664  6888876554

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=86.68  E-value=0.92  Score=38.71  Aligned_cols=32  Identities=19%  Similarity=0.206  Sum_probs=27.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      .||.|.|++|-+|+.+++.+.+ .+.++.+ +++
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~-~g~~V~~-~~r   40 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQT-MGATVKG-YSL   40 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EEC
Confidence            6999999999999999999885 5788765 554

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=86.68  E-value=2.1  Score=35.69  Aligned_cols=82  Identities=22%  Similarity=0.308  Sum_probs=51.8

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---EEEEc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDf  113 (303)
                      .+.|.|+++.||+.+++.+.+ .+..|+ +.+++.  +.+.+.              .+++.+.   ..+..   +..|.
T Consensus         6 ~alITGas~GIG~aia~~la~-~Ga~V~-i~~r~~--~~l~~~--------------~~~~~~~---~~~~~~~~~~~Dv   64 (258)
T d1iy8a_           6 VVLITGGGSGLGRATAVRLAA-EGAKLS-LVDVSS--EGLEAS--------------KAAVLET---APDAEVLTTVADV   64 (258)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHH--------------HHHHHHH---CTTCCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHH--------------HHHHHhh---CCCCeEEEEeccC
Confidence            577889999999999998884 688865 455532  111111              0112110   01222   34589


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      |.++.+.+.+..+.+.  ++++++-..|
T Consensus        65 t~~~~v~~~~~~~~~~~G~iDiLVnnAG   92 (258)
T d1iy8a_          65 SDEAQVEAYVTATTERFGRIDGFFNNAG   92 (258)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence            9999999888877664  5888875544

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=86.65  E-value=1.6  Score=36.27  Aligned_cols=80  Identities=20%  Similarity=0.217  Sum_probs=50.4

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---EEEEcC
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDFT  114 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDfT  114 (303)
                      |.|.|+++++|+++++.+.+ .+..++....++.  ..+.++               .+.+++    ...+   +..|.+
T Consensus         4 ~lITGas~GIG~a~a~~la~-~Ga~V~i~~~~~~--~~~~~~---------------~~~~~~----~g~~~~~~~~Dv~   61 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGK-AGCKVLVNYARSA--KAAEEV---------------SKQIEA----YGGQAITFGGDVS   61 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH---------------HHHHHH----HTCEEEEEECCTT
T ss_pred             EEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHH---------------HHHHHH----cCCcEEEEeCCCC
Confidence            56779999999999999884 6888764333321  111111               111111    1122   345889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++++=..|
T Consensus        62 ~~~~v~~~~~~~~~~~g~iDiLVnnAg   88 (244)
T d1edoa_          62 KEADVEAMMKTAIDAWGTIDVVVNNAG   88 (244)
T ss_dssp             SHHHHHHHHHHHHHHSSCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCccccccc
Confidence            999998888877765  5788875544

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.43  E-value=1.2  Score=37.06  Aligned_cols=33  Identities=33%  Similarity=0.534  Sum_probs=26.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      .++.|.|+++++|+++++.+.+ .+.+++. +|++
T Consensus         8 K~~lITGas~GIG~aia~~la~-~G~~V~~-~~r~   40 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHA-TGARVVA-VSRT   40 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEE-EESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-cCCEEEE-EECC
Confidence            4788999999999999999884 6888664 5554

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.32  E-value=1.1  Score=36.97  Aligned_cols=81  Identities=14%  Similarity=0.137  Sum_probs=49.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDf  113 (303)
                      ..|.|.|+++++|+++++.+.++.. ..|+. .+++.  ..+.++.               +...     .++. +..|.
T Consensus         4 KtilITGassGIG~a~a~~la~~G~~~~Vi~-~~R~~--~~~~~l~---------------~~~~-----~~~~~~~~Dv   60 (250)
T d1yo6a1           4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIA-TARDV--EKATELK---------------SIKD-----SRVHVLPLTV   60 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHTCTTCCEEEE-EESSG--GGCHHHH---------------TCCC-----TTEEEEECCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEE-EeCCH--HHHHHHH---------------HhhC-----CceEEEEEec
Confidence            4688889999999999999886532 35554 33331  1111111               1110     1233 34588


Q ss_pred             CCchhHHHHHHHHHH----cCCCeEEeCCC
Q 022057          114 TDASTVYDNVKQATA----FGMRSVVYVPH  139 (303)
Q Consensus       114 T~p~a~~~~~~~al~----~g~~vVigTTG  139 (303)
                      |.++...+.+..+.+    .++++++-..|
T Consensus        61 s~~~~v~~~~~~i~~~~~~~~idilinnAG   90 (250)
T d1yo6a1          61 TCDKSLDTFVSKVGEIVGSDGLSLLINNAG   90 (250)
T ss_dssp             TCHHHHHHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCeEEEEEcCc
Confidence            988888887777655    25889986655

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=86.26  E-value=1.4  Score=36.71  Aligned_cols=82  Identities=17%  Similarity=0.181  Sum_probs=50.2

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccE---EEEc
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VIDF  113 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---vIDf  113 (303)
                      .+.|.|+++.||+.+++.+. ..++.|+. .+++.. ..+.++.              +++.+.    ....+   ..|.
T Consensus         6 ~alITGas~GIG~aiA~~la-~~Ga~V~~-~~r~~~-~~~~~~~--------------~~~~~~----~g~~~~~~~~Dv   64 (260)
T d1x1ta1           6 VAVVTGSTSGIGLGIATALA-AQGADIVL-NGFGDA-AEIEKVR--------------AGLAAQ----HGVKVLYDGADL   64 (260)
T ss_dssp             EEEETTCSSHHHHHHHHHHH-HTTCEEEE-ECCSCH-HHHHHHH--------------HHHHHH----HTSCEEEECCCT
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EeCCcH-HHHHHHH--------------HHHHHh----cCCcEEEEECCC
Confidence            46778999999999999888 46887654 444310 1111111              111110    12233   3588


Q ss_pred             CCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       114 T~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      |.++.+.+.+..+.+.  +++++|=..|
T Consensus        65 ~~~~~v~~~~~~~~~~~G~iDiLVnnAG   92 (260)
T d1x1ta1          65 SKGEAVRGLVDNAVRQMGRIDILVNNAG   92 (260)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCcEEEeecc
Confidence            9999998888877663  5888875544

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=86.10  E-value=1.7  Score=36.63  Aligned_cols=84  Identities=12%  Similarity=0.141  Sum_probs=51.9

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT  114 (303)
                      ..+.|.|++|++|+.+++.+.+ .+.+|+. ++++.  .+..+..              +++.+..  .... -+..|.+
T Consensus        26 K~alITGas~GIG~aiA~~la~-~Ga~Vii-~~r~~--~~l~~~~--------------~~l~~~~--g~~~~~~~~D~~   85 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSS-LGAQCVI-ASRKM--DVLKATA--------------EQISSQT--GNKVHAIQCDVR   85 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHHH--SSCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-cCCEEEE-EECCH--HHHHHHH--------------HHHHHhc--CCceEEEEeccc
Confidence            3588899999999999998884 6888775 55432  1111111              1222110  0112 2345889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++++-..|
T Consensus        86 ~~~~v~~~~~~~~~~~g~iDilvnnAg  112 (294)
T d1w6ua_          86 DPDMVQNTVSELIKVAGHPNIVINNAA  112 (294)
T ss_dssp             CHHHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred             ChHHHHHHhhhhhhhccccchhhhhhh
Confidence            999888777766553  4788877665

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=85.85  E-value=2  Score=35.42  Aligned_cols=80  Identities=18%  Similarity=0.214  Sum_probs=49.6

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCcE------EEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGME------VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---  108 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~e------Lvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---  108 (303)
                      |.|.|+++++|+.+++.+.+ .+..      .+...+++.  .++.++.              +++-+     ....   
T Consensus         4 vlITGas~GIG~aia~~la~-~G~~~~~~~~~v~~~~r~~--~~l~~~~--------------~~~~~-----~g~~~~~   61 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFAR-AARHHPDFEPVLVLSSRTA--ADLEKIS--------------LECRA-----EGALTDT   61 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-HTTTCTTCCEEEEEEESCH--HHHHHHH--------------HHHHT-----TTCEEEE
T ss_pred             EEEccCCCHHHHHHHHHHHH-hCccccccCcEEEEEeCCH--HHHHHHH--------------HHHHh-----cCCcEEE
Confidence            45789999999999999875 3433      344455431  1111111              11111     2222   


Q ss_pred             EEEEcCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          109 VVIDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       109 VvIDfT~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      +..|.|.++...+.+..+.+.  ++++++=..|
T Consensus        62 ~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAg   94 (240)
T d2bd0a1          62 ITADISDMADVRRLTTHIVERYGHIDCLVNNAG   94 (240)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred             EEecCCCHHHHHHHHHHHHHHcCCcceeecccc
Confidence            345899999999988887764  5888886655

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.81  E-value=1.2  Score=37.36  Aligned_cols=79  Identities=19%  Similarity=0.183  Sum_probs=53.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCC-ccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA-RAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~-~DVvIDfT  114 (303)
                      ..+.|.|+++.||+.+++.+.+ .+..|+. .|++.  +.+                  +++.+++   .+ .=+..|.|
T Consensus         7 K~alITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~~------------------~~~~~~~---~~~~~~~~Dvs   61 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVN-SGARVVI-CDKDE--SGG------------------RALEQEL---PGAVFILCDVT   61 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHH------------------HHHHHHC---TTEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHH------------------HHHHHhc---CCCeEEEccCC
Confidence            3588999999999999998884 6888665 55531  111                  1121110   12 22456889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++++-..|
T Consensus        62 ~~~~v~~~~~~~~~~~g~iDilVnnAG   88 (250)
T d1ydea1          62 QEDDVKTLVSETIRRFGRLDCVVNNAG   88 (250)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEeccc
Confidence            999998888887764  6888886654

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=85.76  E-value=4.2  Score=30.54  Aligned_cols=61  Identities=10%  Similarity=0.092  Sum_probs=42.3

Q ss_pred             CCccEEEEcCCchhHHHHHHHHHHcCCCeEEeC-CCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHH
Q 022057          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (303)
Q Consensus       105 ~~~DVvIDfT~p~a~~~~~~~al~~g~~vVigT-TG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv  169 (303)
                      .++|+++-+.......+.+..+.+.++.+|.-. +|++-=+    .++|+++|+++.-+|.+|.--
T Consensus        44 ~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG~d~ID----~~aa~~~gI~V~N~P~~svae  105 (134)
T d1j4aa2          44 KGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNID----MAKAKELGFQITNVPVYSYTT  105 (134)
T ss_dssp             TTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBC----HHHHHHTTCEEECCCCSCCBH
T ss_pred             cCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCCcCccC----HHHHHhCCeEEEECCCCcHHH
Confidence            478988865554455667777777788777543 3776422    455677899999999988543

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.67  E-value=1.4  Score=34.33  Aligned_cols=68  Identities=10%  Similarity=0.033  Sum_probs=38.5

Q ss_pred             eeEEEEcCCcHHHHHHH--HHHHhcCC---cEEEEEEecCCCCcchh---h----hhcCCCCCCeeecCCHHHHHhcccc
Q 022057           36 IKVIINGAVKEIGRAAV--IAVTKARG---MEVAGAIDSHSVGEDIG---M----VCDMEQPLEIPVMSDLTMVLGSISQ  103 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~--~~i~~~~~---~eLvg~vd~~~~g~d~~---~----~~g~~~~~gv~v~~dl~~~l~~~~~  103 (303)
                      |||+|+|+ |..|...+  ..+...++   -|| ..+|.+.  ..++   +    ...  ....+.++++.++.+     
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el-~L~Did~--~k~~~~~d~~~~~~~--~~~~~~~t~~~~~~l-----   69 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEV-IFYDIDE--EKQKIVVDFVKRLVK--DRFKVLISDTFEGAV-----   69 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEE-EEECSCH--HHHHHHHHHHHHHHT--TSSEEEECSSHHHHH-----
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEE-EEEecCc--HHHHHHHHHHHhhhc--cCceEEEecCccccc-----
Confidence            79999998 97775543  22332332   344 4678542  1111   1    111  244566677888877     


Q ss_pred             CCCccEEEEcCC
Q 022057          104 SKARAVVIDFTD  115 (303)
Q Consensus       104 ~~~~DVvIDfT~  115 (303)
                       .++|+||-...
T Consensus        70 -~~aDvVVita~   80 (162)
T d1up7a1          70 -VDAKYVIFQFR   80 (162)
T ss_dssp             -TTCSEEEECCC
T ss_pred             -CCCCEEEEecc
Confidence             47898886543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.65  E-value=0.95  Score=36.06  Aligned_cols=33  Identities=15%  Similarity=0.205  Sum_probs=27.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++. ++++
T Consensus        24 K~vlItGasgGIG~~ia~~la~-~G~~V~~-~~r~   56 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAG-EGAEVVL-CGRK   56 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHh-hccchhh-cccc
Confidence            6899999999999999998885 5788765 5553

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=85.60  E-value=0.25  Score=39.92  Aligned_cols=32  Identities=16%  Similarity=0.242  Sum_probs=25.8

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      -||+|+|+ |.||+.|+..++ ..|++++ ++|++
T Consensus         5 ~~vaViGa-G~mG~~iA~~~a-~~G~~V~-l~D~~   36 (186)
T d1wdka3           5 KQAAVLGA-GIMGGGIAYQSA-SKGTPIL-MKDIN   36 (186)
T ss_dssp             SSEEEECC-HHHHHHHHHHHH-HTTCCEE-EECSS
T ss_pred             CEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEECC
Confidence            47999998 999999998766 4688876 57754

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=85.60  E-value=0.8  Score=41.45  Aligned_cols=87  Identities=17%  Similarity=0.213  Sum_probs=59.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCC--HHHHHhccccCCCccEEEEc
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~d--l~~~l~~~~~~~~~DVvIDf  113 (303)
                      .+|.+.|+ |.-|+..++.+. +.++++++++|.....  .++     .-.|+||.+.  +.+....    ..-.+.|++
T Consensus        39 ~~~~l~g~-~~~~~~~~~~~~-~~~~~v~~~~d~~~~~--~~~-----~~~g~pv~s~~~~~~~~~~----~~~~~~v~~  105 (395)
T d2py6a1          39 TRLVILGT-KGFGAHLMNVRH-ERPCEVIAAVDDFRYH--SGE-----LYYGLPIISTDRFTELATH----DRDLVALNT  105 (395)
T ss_dssp             CEEEEECS-SSTHHHHHSCSS-SCSSEEEEEECTTTTT--SCC-----EETTEEEECHHHHHHHHHT----CTTEEEEEC
T ss_pred             ceEEEEcC-chhHHHHHHHHH-HCCceEEEEecCchhh--cCc-----eecceEeecHHHhhhhhhc----cCcEEEEEe
Confidence            57999998 999999998665 6789999999974311  111     1358888653  2233321    233478888


Q ss_pred             CCchhHHHHH-HHHHHcCCCeEE
Q 022057          114 TDASTVYDNV-KQATAFGMRSVV  135 (303)
Q Consensus       114 T~p~a~~~~~-~~al~~g~~vVi  135 (303)
                      +.++...... ..+.++|+|.+-
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~  128 (395)
T d2py6a1         106 CRYDGPKRFFDQICRTHGIPHLN  128 (395)
T ss_dssp             CCSHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccccchhhHHHHHHHhcCCcccc
Confidence            8777775555 566788988763

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.54  E-value=1.2  Score=37.63  Aligned_cols=86  Identities=26%  Similarity=0.291  Sum_probs=53.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT  114 (303)
                      ..+.|.|+++.+|+++++.+.+ .+..|+ +.|++.  ..+.+..              +++.+.-....++ -+..|.|
T Consensus         5 K~alITGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~l~~~~--------------~~i~~~~~~~~~~~~~~~Dv~   66 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAK-EGAQVT-ITGRNE--DRLEETK--------------QQILKAGVPAEKINAVVADVT   66 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHHH--------------HHHHHTTCCGGGEEEEECCTT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH--------------HHHHHcCCCCcceEEEEeeCC
Confidence            3578999999999999999884 688866 455532  1111111              1111100000012 1456899


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++...+.+..+.+.  ++++++-..|
T Consensus        67 ~~~~v~~~~~~~~~~~G~iDilVnnAG   93 (274)
T d1xhla_          67 EASGQDDIINTTLAKFGKIDILVNNAG   93 (274)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCceEEEeecc
Confidence            999999988888764  5788886544

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=85.27  E-value=2  Score=36.15  Aligned_cols=72  Identities=13%  Similarity=0.048  Sum_probs=48.4

Q ss_pred             CCCeeecCCHHHHHhccccCCCccEEEEcC-CchhHHHHHHHHHHcCC--CeEEeCCCCCHHHHHHHHHHhhhcCCeEEE
Q 022057           85 PLEIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGM--RSVVYVPHIQLETVSALSAFCDKASMGCLI  161 (303)
Q Consensus        85 ~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT-~p~a~~~~~~~al~~g~--~vVigTTG~~~e~~~~L~~~a~~~~i~vv~  161 (303)
                      +.|+.+++|..+++      .++|++|-+. .++...+.++..+++-.  .+|+-++..+.....++.+..++.++.++=
T Consensus       126 e~Gv~v~~d~~Eav------~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi~  199 (242)
T d2b0ja2         126 DVGLKVTSDDREAV------EGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITS  199 (242)
T ss_dssp             GGTCEEESCHHHHH------TTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEE
T ss_pred             HCCCEEECCHHHHH------hcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEEC
Confidence            45678888888888      4789988776 34556667666655433  255555555666667777777777777653


Q ss_pred             c
Q 022057          162 A  162 (303)
Q Consensus       162 a  162 (303)
                      .
T Consensus       200 ~  200 (242)
T d2b0ja2         200 Y  200 (242)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.24  E-value=0.38  Score=42.31  Aligned_cols=31  Identities=26%  Similarity=0.396  Sum_probs=27.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      |||.|.|++|-+|+.+++.+.+ .+.++++ +|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~-~g~~V~~-iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSK-KNYEVCI-VD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EE
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CcCEEEE-Ee
Confidence            6999999999999999999885 6789876 44

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=85.22  E-value=0.93  Score=36.53  Aligned_cols=32  Identities=28%  Similarity=0.279  Sum_probs=23.1

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      .|.|+|| |.+|...+..+... +..-+.++|+.
T Consensus        28 tVlV~Ga-G~vGl~a~~~ak~~-ga~~Vi~~d~~   59 (195)
T d1kola2          28 TVYVAGA-GPVGLAAAASARLL-GAAVVIVGDLN   59 (195)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHT-TCSEEEEEESC
T ss_pred             EEEEECc-CHHHHHHHHHHHhh-cccceeeeccc
Confidence            6899998 99998888876644 44444456653

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=85.21  E-value=2.3  Score=34.78  Aligned_cols=31  Identities=23%  Similarity=0.348  Sum_probs=24.2

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      |.|.|++|-+|+.+++.+.+....++++ +|.
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~-~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILV-VDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEE-EEC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEE-EEC
Confidence            7899999999999999998663245554 663

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.20  E-value=1.5  Score=36.87  Aligned_cols=86  Identities=23%  Similarity=0.244  Sum_probs=53.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT  114 (303)
                      ..+.|.|++++||+.+++.+.+ .+..|+. .+++.  ..+.+..              +++.+.-....++ =+..|.|
T Consensus         6 K~alVTGas~GIG~aia~~la~-~Ga~V~l-~~r~~--~~l~~~~--------------~~l~~~~~~~~~~~~~~~Dvs   67 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQ-EGANVTI-TGRSS--ERLEETR--------------QIILKSGVSEKQVNSVVADVT   67 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHTTTCCGGGEEEEECCTT
T ss_pred             CEEEEeCcCcHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHhcCCCCCceEEEEccCC
Confidence            4678889999999999998874 6787654 55532  1111111              1111100000011 1355889


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++.+.+.+..+.+.  ++++++-..|
T Consensus        68 ~~~~v~~~~~~~~~~~g~iDilvnnAG   94 (272)
T d1xkqa_          68 TEDGQDQIINSTLKQFGKIDVLVNNAG   94 (272)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCceEEEeCCc
Confidence            999999988888775  6898886654

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=84.94  E-value=0.54  Score=41.83  Aligned_cols=90  Identities=14%  Similarity=0.130  Sum_probs=57.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCCCCCCe--eecCCHHHHHhccccCCCccEEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvID  112 (303)
                      -.++|+|+ |.+++.+++++....+++=+-+++++.  .....++ .+....|+  .+.+|+++++      ..+||++-
T Consensus       129 ~~l~iiG~-G~QA~~~~~a~~~v~~i~~V~v~~r~~--~~~~~~~~~l~~~~g~~v~~~~s~~eav------~~ADIi~t  199 (340)
T d1x7da_         129 RKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDP--LATAKLIANLKEYSGLTIRRASSVAEAV------KGVDIITT  199 (340)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSH--HHHHHHHHHHTTCTTCEEEECSSHHHHH------TTCSEEEE
T ss_pred             ceEEEEcc-cHHHHHHHHHHhhhcceeeeEEEecCh--HHHHHHHHhhhhccCCCceecCCHHHHH------hcCCceee
Confidence            57999997 999999999998877788888888652  1111121 11122344  4588999998      47999987


Q ss_pred             cCCchhHHHHH-HHHHHcCCCeE
Q 022057          113 FTDASTVYDNV-KQATAFGMRSV  134 (303)
Q Consensus       113 fT~p~a~~~~~-~~al~~g~~vV  134 (303)
                      +|........+ ...++-|.++.
T Consensus       200 ~Tas~s~~Pv~~~~~l~pG~hI~  222 (340)
T d1x7da_         200 VTADKAYATIITPDMLEPGMHLN  222 (340)
T ss_dssp             CCCCSSEEEEECGGGCCTTCEEE
T ss_pred             ccccCCCCcccchhhcCCCCEEe
Confidence            77322111111 13456777764

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=84.42  E-value=0.76  Score=36.49  Aligned_cols=33  Identities=12%  Similarity=0.110  Sum_probs=26.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      .+|.|+|+ |.+|+.++..+... +..-+-+++++
T Consensus        19 k~vlIlGa-GGaarai~~al~~~-g~~~i~i~nR~   51 (182)
T d1vi2a1          19 KTMVLLGA-GGASTAIGAQGAIE-GLKEIKLFNRR   51 (182)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TCSEEEEEECS
T ss_pred             CEEEEECC-cHHHHHHHHHHhhc-CCceEeeeccc
Confidence            58999998 99999999888764 66666677764

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.37  E-value=2  Score=35.66  Aligned_cols=86  Identities=19%  Similarity=0.222  Sum_probs=53.1

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc-EEEEcCC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDfT~  115 (303)
                      .+.|.|+++++|+++++.+.+ .+..++. ++++.  +...+..              +++.+. ....++. +..|.|.
T Consensus         5 valITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~~~~~~--------------~~l~~~-~~~~~~~~~~~Dv~~   65 (254)
T d2gdza1           5 VALVTGAAQGIGRAFAEALLL-KGAKVAL-VDWNL--EAGVQCK--------------AALHEQ-FEPQKTLFIQCDVAD   65 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHTTT-SCGGGEEEEECCTTS
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHHh-cCCCcEEEEEeecCC
Confidence            467779999999999999884 6888654 55431  1111110              111110 0001111 3458999


Q ss_pred             chhHHHHHHHHHHc--CCCeEEeCCCCC
Q 022057          116 ASTVYDNVKQATAF--GMRSVVYVPHIQ  141 (303)
Q Consensus       116 p~a~~~~~~~al~~--g~~vVigTTG~~  141 (303)
                      ++.+.+.+..+.+.  ++++++-..|..
T Consensus        66 ~~~v~~~~~~~~~~~G~iDilVnnAg~~   93 (254)
T d2gdza1          66 QQQLRDTFRKVVDHFGRLDILVNNAGVN   93 (254)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHHHcCCcCeeccccccc
Confidence            99999888887663  588998877754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=83.97  E-value=2.1  Score=31.55  Aligned_cols=109  Identities=14%  Similarity=0.116  Sum_probs=56.0

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-cC---CHHHHHhccccCCCccEEEEc
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS---DLTMVLGSISQSKARAVVIDF  113 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~---dl~~~l~~~~~~~~~DVvIDf  113 (303)
                      |.|+|+ |++|+.+++.+...   +++ +++.+.  .....+.    ..|+.+ +.   +. +.+.+ ..-.+++.+|-.
T Consensus         3 ivI~G~-g~~g~~l~~~L~~~---~i~-vi~~d~--~~~~~~~----~~~~~~i~Gd~~~~-~~L~~-a~i~~A~~vi~~   69 (129)
T d2fy8a1           3 VVICGW-SESTLECLRELRGS---EVF-VLAEDE--NVRKKVL----RSGANFVHGDPTRV-SDLEK-ANVRGARAVIVN   69 (129)
T ss_dssp             EEEESC-CHHHHHHHHTSCGG---GEE-EEESCT--THHHHHH----HTTCEEEESCTTSH-HHHHH-TTCTTCSEEEEC
T ss_pred             EEEECC-CHHHHHHHHHHcCC---CCE-EEEcch--HHHHHHH----hcCccccccccCCH-HHHHH-hhhhcCcEEEEe
Confidence            789998 99999999987543   343 456532  1111111    234433 22   33 33321 112467888866


Q ss_pred             CCchhH-HHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCC
Q 022057          114 TDASTV-YDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (303)
Q Consensus       114 T~p~a~-~~~~~~al~~--g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~  165 (303)
                      +.-+.. ...+..+.+.  ..++|.-+  .+++..+.++.+    |+..+++|+-
T Consensus        70 ~~~d~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l~~~----G~d~vi~p~~  118 (129)
T d2fy8a1          70 LESDSETIHCILGIRKIDESVRIIAEA--ERYENIEQLRMA----GADQVISPFV  118 (129)
T ss_dssp             CSSHHHHHHHHHHHHHHCSSSCEEEEC--SSGGGHHHHHHH----HCSEEECHHH
T ss_pred             ccchhhhHHHHHHHHHHCCCceEEEEE--cCHHHHHHHHHC----CCCEEEChHH
Confidence            644433 3333333343  34555543  344444455443    4556777764

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.56  E-value=0.71  Score=38.13  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=26.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      .++.|.|+++.||+.+++.+.+ .+.+|+. .+++
T Consensus         5 K~~lVTGas~GIG~aia~~l~~-~Ga~V~~-~~r~   37 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQ-EGAEVTI-CARN   37 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEE-EECC
Confidence            4689999999999999998884 6888664 5553

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.36  E-value=1.2  Score=36.93  Aligned_cols=75  Identities=12%  Similarity=0.100  Sum_probs=46.4

Q ss_pred             ceeEEEE-cCCcHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---
Q 022057           35 NIKVIIN-GAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---  108 (303)
Q Consensus        35 ~ikV~V~-G~~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---  108 (303)
                      .=||+|+ |+++++|+.+++.+.+  .+++.++. ++++.  ..+.++.              +++...   ..+..   
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~-~~r~~--~~l~~~~--------------~~l~~~---~~~~~~~~   64 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLV-SARSE--SMLRQLK--------------EELGAQ---QPDLKVVL   64 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEE-EESCH--HHHHHHH--------------HHHHHH---CTTSEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEE-EECCH--HHHHHHH--------------HHHHhh---cCCceEEE
Confidence            3466666 9999999999999875  47888875 44431  1111111              111110   01222   


Q ss_pred             EEEEcCCchhHHHHHHHHHHc
Q 022057          109 VVIDFTDASTVYDNVKQATAF  129 (303)
Q Consensus       109 VvIDfT~p~a~~~~~~~al~~  129 (303)
                      +..|.|.++...+.+..+.+.
T Consensus        65 ~~~Dvs~~~~v~~l~~~~~~~   85 (259)
T d1oaaa_          65 AAADLGTEAGVQRLLSAVREL   85 (259)
T ss_dssp             EECCTTSHHHHHHHHHHHHHS
T ss_pred             EEccCCCHHHHHHHHHHHHHh
Confidence            345899999999988887774

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.34  E-value=0.63  Score=39.28  Aligned_cols=31  Identities=16%  Similarity=0.331  Sum_probs=27.0

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      ||.|.|++|-+|+.+++.+.+ .++++.++..
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~-~g~~V~~~~r   32 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLE-KGYRVHGLVA   32 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHH-CcCEEEEEEC
Confidence            799999999999999999885 4899987643

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=83.16  E-value=1.4  Score=36.66  Aligned_cols=82  Identities=22%  Similarity=0.241  Sum_probs=52.7

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---EEEE
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (303)
                      ..+.|.|+++.+|+++++.+. ..+.+++...+++.  +.+.+               ..+.+.+    ...+   +..|
T Consensus         7 K~alITGas~GIG~aia~~la-~~G~~Vvi~~~~~~--~~~~~---------------~~~~~~~----~g~~~~~~~~D   64 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELG-RRGASVVVNYGSSS--KAAEE---------------VVAELKK----LGAQGVAIQAD   64 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCH--HHHHH---------------HHHHHHH----TTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEcCCCh--HHHHH---------------HHHHHHH----cCCCceEecCC
Confidence            357899999999999999888 57888875444431  11111               1122211    2223   4558


Q ss_pred             cCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       113 fT~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      ++.++...+.+..+.+.  ++++++-..|
T Consensus        65 ~~~~~~v~~~~~~~~~~~g~idilinnag   93 (259)
T d1ja9a_          65 ISKPSEVVALFDKAVSHFGGLDFVMSNSG   93 (259)
T ss_dssp             TTSHHHHHHHHHHHHHHHSCEEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCcEEEeccc
Confidence            89999998888766654  5777776655

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.01  E-value=2  Score=32.84  Aligned_cols=30  Identities=33%  Similarity=0.398  Sum_probs=23.8

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      +|.|+|+ |.+|...++.+.. -+.+++++ |+
T Consensus        30 ~VlV~Ga-G~vG~~~~~~ak~-~G~~Vi~~-~~   59 (166)
T d1llua2          30 WVAISGI-GGLGHVAVQYARA-MGLHVAAI-DI   59 (166)
T ss_dssp             EEEEECC-SHHHHHHHHHHHH-TTCEEEEE-ES
T ss_pred             EEEEeec-cccHHHHHHHHHH-cCCcccee-cc
Confidence            6999998 9999999987664 57887764 54

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=82.80  E-value=0.36  Score=38.36  Aligned_cols=33  Identities=15%  Similarity=0.267  Sum_probs=25.1

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      ..+|.|+|+ |++++.++.++.+ ..-++. +++++
T Consensus        18 ~k~vlIlGa-GGaarai~~aL~~-~~~~i~-I~nR~   50 (171)
T d1p77a1          18 NQHVLILGA-GGATKGVLLPLLQ-AQQNIV-LANRT   50 (171)
T ss_dssp             TCEEEEECC-SHHHHTTHHHHHH-TTCEEE-EEESS
T ss_pred             CCEEEEECC-cHHHHHHHHHHcc-cCceee-eccch
Confidence            357999998 9999999998875 345644 66664

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=82.50  E-value=1.6  Score=36.16  Aligned_cols=98  Identities=17%  Similarity=0.145  Sum_probs=50.0

Q ss_pred             eEEEE-cCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh----cCCCCCCeeecCCHHHHHhccccCCCccEEE
Q 022057           37 KVIIN-GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----DMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (303)
Q Consensus        37 kV~V~-G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~----g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (303)
                      .|+|+ |+++++|+++++.+. ..+..++....++.  .++..+.    .......+.+..|.......  .....+...
T Consensus         3 pVAlITGas~GIG~aiA~~la-~~Ga~V~i~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~   77 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLH-AEGYAVCLHYHRSA--AEANALSATLNARRPNSAITVQADLSNVATA--PVSGADGSA   77 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCH--HHHHHHHHHHHHHSTTCEEEEECCCSSSCBC--CCC----CC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCCH--HHHHHHHHHHHhhcCCceEEEEeeccccccc--ccccccccc
Confidence            46655 999999999999988 56888875444321  1111110    00001111111111111000  001123345


Q ss_pred             EcCCchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          112 DFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      |.|.++...+.+..+.+.  +++++|-..|
T Consensus        78 dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG  107 (284)
T d1e7wa_          78 PVTLFTRCAELVAACYTHWGRCDVLVNNAS  107 (284)
T ss_dssp             CBCHHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCCEEEecCC
Confidence            677788888877777654  5788886655

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=82.23  E-value=0.68  Score=35.87  Aligned_cols=33  Identities=24%  Similarity=0.204  Sum_probs=26.0

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEec
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (303)
                      ||+|+|++|++|+.++-.+..++-..=+..+|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            899999779999999998887765533346773

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.73  E-value=0.71  Score=39.60  Aligned_cols=32  Identities=25%  Similarity=0.312  Sum_probs=27.0

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      |.+|.|.|++|-+|+.+++.+.+ .+.++.+ +|
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~-~g~~V~~-~d   47 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLK-LDQKVVG-LD   47 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHH-CcCEEEE-EE
Confidence            45788899999999999998885 5889887 44

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=81.55  E-value=0.77  Score=39.53  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=28.3

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      -||.|.|++|-+|+.+++.+.+ .|.++++.+.
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~-~G~~V~~~vR   43 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLE-HGYKVRGTAR   43 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CcCEEEEEeC
Confidence            5899999999999999998885 4899998764

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=80.81  E-value=0.34  Score=38.89  Aligned_cols=90  Identities=17%  Similarity=0.177  Sum_probs=57.6

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee---cCCH--HHHHhccccCCCccEEE
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDL--TMVLGSISQSKARAVVI  111 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v---~~dl--~~~l~~~~~~~~~DVvI  111 (303)
                      .|.|.|++|.+|...++.+. .-+.++++...++.   . .+.+   .++|...   +++.  .+.+.    ....|.+|
T Consensus        34 ~vlV~gasGGVG~~aiQlAk-~~Ga~Via~~~~~~---k-~~~~---~~lGad~vi~~~~~~~~~~l~----~~~~~~vv  101 (177)
T d1o89a2          34 EIVVTGASGGVGSTAVALLH-KLGYQVVAVSGRES---T-HEYL---KSLGASRVLPRDEFAESRPLE----KQVWAGAI  101 (177)
T ss_dssp             EEEESSTTSHHHHHHHHHHH-HTTCCEEEEESCGG---G-HHHH---HHHTEEEEEEGGGSSSCCSSC----CCCEEEEE
T ss_pred             cEEEEEccccchHHHHHHHH-HcCCCeEEEecchh---H-HHHH---HhhccccccccccHHHHHHHH----hhcCCeeE
Confidence            58999999999999999665 57999998765432   1 1111   1223322   2211  11222    24579999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCeEEeCC
Q 022057          112 DFTDASTVYDNVKQATAFGMRSVVYVP  138 (303)
Q Consensus       112 DfT~p~a~~~~~~~al~~g~~vVigTT  138 (303)
                      |+--.+...+.+......|.=+.+|..
T Consensus       102 D~Vgg~~~~~~l~~l~~~Griv~~G~~  128 (177)
T d1o89a2         102 DTVGDKVLAKVLAQMNYGGCVAACGLA  128 (177)
T ss_dssp             ESSCHHHHHHHHHTEEEEEEEEECCCT
T ss_pred             EEcchHHHHHHHHHhccccceEeeccc
Confidence            998777666676666667777777765

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=80.63  E-value=1.2  Score=36.96  Aligned_cols=80  Identities=21%  Similarity=0.295  Sum_probs=52.6

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCC-ccEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA-RAVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~-~DVvIDfT  114 (303)
                      ..+.|.|+++.+|+.+++.+. ..+++++. .+++.  +++                  +++++++  ..+ .-+..|++
T Consensus         6 K~alItGas~GIG~aia~~l~-~~G~~V~~-~~r~~--~~~------------------~~~~~~~--~~~~~~~~~Dls   61 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFA-REGASLVA-VDREE--RLL------------------AEAVAAL--EAEAIAVVADVS   61 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEE-EESCH--HHH------------------HHHHHTC--CSSEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCH--HHH------------------HHHHHHc--CCceEEEEecCC
Confidence            357788999999999999988 46888874 44431  111                  2222210  011 12456899


Q ss_pred             CchhHHHHHHHHHH--cCCCeEEeCCC
Q 022057          115 DASTVYDNVKQATA--FGMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~--~g~~vVigTTG  139 (303)
                      .++...+.+..+.+  -++++++--.|
T Consensus        62 ~~~~i~~~~~~i~~~~g~iDiLinnAg   88 (241)
T d2a4ka1          62 DPKAVEAVFAEALEEFGRLHGVAHFAG   88 (241)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEEGGG
T ss_pred             CHHHHHHHHHHHHHHhCCccEeccccc
Confidence            99999888887776  35888877543

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.44  E-value=0.76  Score=39.18  Aligned_cols=31  Identities=26%  Similarity=0.408  Sum_probs=26.8

Q ss_pred             eE-EEEcCCcHHHHHHHHHHHhcCCcEEEEEEe
Q 022057           37 KV-IINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (303)
Q Consensus        37 kV-~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd   68 (303)
                      || .|.|++|-+|+.+++.+.+ .+.+++++..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~-~g~~V~~i~r   33 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLE-KGYEVHGIVR   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CEEEEecCCcHHHHHHHHHHHH-CcCEEEEEEC
Confidence            78 6999999999999999986 5999988543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=80.40  E-value=2.6  Score=35.40  Aligned_cols=80  Identities=20%  Similarity=0.245  Sum_probs=52.0

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCc-cEEEEcC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDfT  114 (303)
                      ..+.|.|+++++|+++++.+.+ .+.+|+. ++++.  +.+.++               .+-+.     .++ -+..|.+
T Consensus         6 K~alITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~l~~~---------------~~~~~-----~~~~~~~~Dv~   61 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVA-EGAKVAV-LDKSA--ERLAEL---------------ETDHG-----DNVLGIVGDVR   61 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHH---------------HHHHG-----GGEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH---------------HHHcC-----CCeeEEecccc
Confidence            3588899999999999999885 6888765 55431  111111               11111     122 2345888


Q ss_pred             CchhHHHHHHHHHHc--CCCeEEeCCC
Q 022057          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~~--g~~vVigTTG  139 (303)
                      .++...+.+..+.+.  ++++++-.-|
T Consensus        62 ~~~~~~~~~~~~~~~~g~idilvnnAG   88 (276)
T d1bdba_          62 SLEDQKQAASRCVARFGKIDTLIPNAG   88 (276)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             cHHHHHHHHHHHHHHhCCccccccccc
Confidence            999888888877765  6888875544

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.31  E-value=0.8  Score=37.60  Aligned_cols=32  Identities=34%  Similarity=0.451  Sum_probs=26.9

Q ss_pred             eEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        37 kV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      ||.|.|++|.+|+++++.+.+ .+.+|+. +|+.
T Consensus         4 kVlITGas~GIG~aia~~l~~-~G~~V~~-~~~~   35 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKK-NGYTVLN-IDLS   35 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTEEEEE-EESS
T ss_pred             EEEEECCCCHHHHHHHHHHHH-CCCEEEE-EECC
Confidence            789999999999999999885 6888664 6654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=80.30  E-value=1.1  Score=31.34  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=25.8

Q ss_pred             ceeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecC
Q 022057           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (303)
Q Consensus        35 ~ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (303)
                      |.+|+|+|+ |..||+++.+.. .=++++. ++|++
T Consensus         1 ~k~vgIlG~-GQLgrMl~~Aa~-~LG~~v~-vldp~   33 (78)
T d3etja2           1 MKQVCVLGN-GQLGRMLRQAGE-PLGIAVW-PVGLD   33 (78)
T ss_dssp             CEEEEEEBC-SHHHHHHHHHHG-GGTEEEE-EECTT
T ss_pred             CCEEEEEcC-CHHHHHHHHHHH-HcCCEEE-EEcCC
Confidence            468999997 999999998765 4577766 46654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.26  E-value=4.2  Score=33.57  Aligned_cols=79  Identities=19%  Similarity=0.276  Sum_probs=50.8

Q ss_pred             EEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCcc---EEEEcC
Q 022057           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDFT  114 (303)
Q Consensus        38 V~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDfT  114 (303)
                      +.|.|+++++|+.+++.+. +.+..|+. +|++.  .++.++.              +++ .+    ....   +..|.|
T Consensus        10 ~lITGas~GIG~~ia~~la-~~G~~V~l-~~r~~--~~l~~~~--------------~~~-~~----~~~~~~~~~~Dvs   66 (244)
T d1yb1a_          10 VLITGAGHGIGRLTAYEFA-KLKSKLVL-WDINK--HGLEETA--------------AKC-KG----LGAKVHTFVVDCS   66 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHHHHH--------------HHH-HH----TTCCEEEEECCTT
T ss_pred             EEEeCCCcHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHHH--------------HHH-Hh----cCCcEEEEEeeCC
Confidence            5677999999999999988 46888664 66542  1222211              111 11    1222   355889


Q ss_pred             CchhHHHHHHHHHH-cC-CCeEEeCCC
Q 022057          115 DASTVYDNVKQATA-FG-MRSVVYVPH  139 (303)
Q Consensus       115 ~p~a~~~~~~~al~-~g-~~vVigTTG  139 (303)
                      .++.+.+.++.+.+ .| +++++-..|
T Consensus        67 ~~~~v~~~~~~i~~~~g~idilinnag   93 (244)
T d1yb1a_          67 NREDIYSSAKKVKAEIGDVSILVNNAG   93 (244)
T ss_dssp             CHHHHHHHHHHHHHHTCCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCceeEeecc
Confidence            99999888887754 54 777776654

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.15  E-value=1.6  Score=35.22  Aligned_cols=149  Identities=15%  Similarity=0.174  Sum_probs=81.1

Q ss_pred             eeEEEEcCCcHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeecCCHHHHHhccccCCCccEEEEcCC
Q 022057           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (303)
Q Consensus        36 ikV~V~G~~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDfT~  115 (303)
                      .+|+|+|+ |.-|++++..+. +.+++++-.+.+..  .. -+.+   .+-|..+ -+++|+..      .+|+|.-.++
T Consensus        17 k~IaViGY-GsQG~AhAlNLr-DSG~~V~VGLr~gs--~s-~~~A---~~~Gf~v-~~~~eA~~------~aDiim~L~P   81 (182)
T d1np3a2          17 KKVAIIGY-GSQGHAHACNLK-DSGVDVTVGLRSGS--AT-VAKA---EAHGLKV-ADVKTAVA------AADVVMILTP   81 (182)
T ss_dssp             SCEEEECC-SHHHHHHHHHHH-HTTCCEEEECCTTC--HH-HHHH---HHTTCEE-ECHHHHHH------TCSEEEECSC
T ss_pred             CEEEEEee-CcHhHHHHhhhh-hcCCCEEEEcCCCC--cc-HHHH---hhhcccc-ccHHHHhh------hcCeeeeecc
Confidence            58999998 999999999887 67888876665421  11 1111   1234444 35677774      7999886664


Q ss_pred             chhHHHH----HHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCCeEEEcCCCcHHHHHHHHHHHHhccCCCcEEEEEc
Q 022057          116 ASTVYDN----VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES  191 (303)
Q Consensus       116 p~a~~~~----~~~al~~g~~vVigTTG~~~e~~~~L~~~a~~~~i~vv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~  191 (303)
                      -+...+.    +.-.++.|.-+.. ..||+-- +..|   --..++-++..+-=+.|..+=..+.+--  -.+-.  +=.
T Consensus        82 D~~q~~vy~~~I~p~lk~g~~L~F-aHGfnIh-~~~I---~pp~~vdV~mvAPKgpG~~VR~~y~~G~--Gvp~l--~AV  152 (182)
T d1np3a2          82 DEFQGRLYKEEIEPNLKKGATLAF-AHGFSIH-YNQV---VPRADLDVIMIAPKAPGHTVRSEFVKGG--GIPDL--IAI  152 (182)
T ss_dssp             HHHHHHHHHHHTGGGCCTTCEEEE-SCCHHHH-TTSS---CCCTTCEEEEEEESSCSHHHHHHHHTTC--CCCEE--EEE
T ss_pred             hHHHHHHHHHhhhhhcCCCcEEEE-eccceEE-eeee---ecCCCCceEeeccccccchhHHHhhcCC--ccceE--EEE
Confidence            3333333    3333455555544 3466531 1111   1123355555444556664444443211  11222  222


Q ss_pred             cCCCCCCCcHHHHHHHHHHHh
Q 022057          192 RPNARDFPSPDATQIANNLSN  212 (303)
Q Consensus       192 Hh~K~DaPSGTA~~l~~~i~~  212 (303)
                      |   .| +||.|+.++-+.+.
T Consensus       153 ~---qD-~sg~A~~~alayA~  169 (182)
T d1np3a2         153 Y---QD-ASGNAKNVALSYAC  169 (182)
T ss_dssp             E---EC-SSSCHHHHHHHHHH
T ss_pred             E---eC-CCccHHHHHHHHHH
Confidence            2   23 68888888877765