Citrus Sinensis ID: 022082

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
Protein Sequence
MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccEEcccccccEEEEEccccEEEEEcccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccEEccccccccEEEEEccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEEEcccccccccccccccEEEEcccccccccccccccccccccccEEEEEEEEEEccccccccccccccccccccccEEEcccccccccccccccccccEEccccccccccccccccccccccccccccccccHHccccccccccccEEccEEEEcccccEEEEEEccccEEEEccccHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccEcccEccccccEEEEEcEEccccEEEEEccccHHHHHcc
Coil and Loop (DISEMBL)
MLDLNLNVMSIEstqqnsdeervGSVVLVekspegssgtsnssvvnadassnvgddescstravagdnsvftFNFDILKvggdsgnvrnenveqnnaasrkefaffpasgggengggqssgswiDLSFDKQQQQYQnqqpqqqegggevrvtqqsspvvkksrrgprsrssqyrgvtfyrrtgrweshiwdcgkqvylggFDTAHAAARAYDRAAIKfrgvdadinfnlADYEDDMKQMKNLTKEEFVHILRRQstgfsrgsskyrgvtlhkcgrwEARMGQFLGKKYIYLGLFDSEVEAARS
Flexible Loop (DISEMBL)
MLDLNLNVMSIestqqnsdeervGSVVLVEkspegssgtsnssvvnadassnvgddescstravagdnsvFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSSGSWIDLSFDKQQQQYQNQQpqqqegggevrvtqqsspvvkksrrgprsrssqyrgvtfyrrtgrweshiWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRrqstgfsrgsskyrgvtlhkcgrwEARMGQFLGKKYIYLGLFDSEVEAARS
Low Complexity Region (SEG)
MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEgssgtsnssvvnadassnvGDDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPAsgggengggqssgsWIDLSFDKqqqqyqnqqpqqqEGGGEVRVTQQSSPVVKKsrrgprsrssQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTahaaaraydraaIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARS
Disordered region (IsUnstruct)
***************************************************************VAGDNSVFTFNFDILKVGG******************************************************************************************YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFD********
Disordered Region (DISOPRED)
MLDLNLN*************************************************************************************************************************************************************************TFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEE********************GVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAA**
Disordered Region (DISEMBL)
MLDLNLNVMSIES**********GSVVLV*******************************TRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSSGSWIDLSFDK******************************************YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARS
Disordered Region (DISPRO)
******************************************************************DNSVFTFNFDILKVG*****************SRKEFAFFPASG***********************************************************SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDS*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	303	2.2.26 [Sep-21-2011]
Q9SK03	449	Ethylene-responsive trans	yes	no	0.828	0.559	0.618	6e-74
Q9LVG2	485	AP2-like ethylene-respons	no	no	0.891	0.556	0.559	7e-66
P47927	432	Floral homeotic protein A	no	no	0.640	0.449	0.724	2e-65
Q9FH95	352	AP2-like ethylene-respons	no	no	0.478	0.411	0.878	3e-63
Q6PV67	325	AP2-like ethylene-respons	no	no	0.386	0.36	0.702	1e-39
Q6PQQ3	558	AP2-like ethylene-respons	no	no	0.495	0.268	0.490	3e-38
Q5YGP7	568	AP2-like ethylene-respons	no	no	0.445	0.237	0.520	2e-37
Q6PV68	346	AP2-like ethylene-respons	no	no	0.422	0.369	0.726	5e-37
Q5YGP8	574	AP2-like ethylene-respons	no	no	0.514	0.271	0.467	6e-37
Q1PFE1	415	AP2-like ethylene-respons	no	no	0.481	0.351	0.496	6e-37

>sp|Q9SK03|RAP27_ARATH Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2

 Score =  277 bits (709), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 188/304 (61%), Positives = 207/304 (68%), Gaps = 53/304 (17%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGS-------SGTSNSSVVNADASSNV 53
           MLDLNLN  S ESTQ   D        L  ++ + S       SGTS SSV+NAD     
Sbjct: 1   MLDLNLNADSPESTQYGGDS------YLDRQTSDNSAGNRVEESGTSTSSVINAD----- 49

Query: 54  GDDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGG- 112
           GD++SCSTRA       FT +FDILKVG  SG    +     +A+  KEF  FP SG   
Sbjct: 50  GDEDSCSTRA-------FTLSFDILKVGSSSGG---DESPAASASVTKEF--FPVSGDCG 97

Query: 113 ---ENGGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPV------VKKSR 163
              +  G  SS +WIDLSFD+              G GE ++             VKKSR
Sbjct: 98  HLRDVEGSSSSRNWIDLSFDRI-------------GDGETKLVTPVPTPAPVPAQVKKSR 144

Query: 164 RGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDA 223
           RGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDA
Sbjct: 145 RGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDA 204

Query: 224 DINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQF 283
           DINF L DYE+DMKQ++NL+KEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQF
Sbjct: 205 DINFTLGDYEEDMKQVQNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQF 264

Query: 284 LGKK 287
           LGKK
Sbjct: 265 LGKK 268

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVG2|TOE2_ARATH AP2-like ethylene-responsive transcription factor TOE2 OS=Arabidopsis thaliana GN=TOE2 PE=1 SV=1

 Score =  251 bits (640), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 161/288 (55%), Positives = 189/288 (65%), Gaps = 18/288 (6%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNV-GDDESC 59
           MLDLNL+V S ESTQ   D   V  V L +      S TSNSSVVNA+ASS + G+DE C
Sbjct: 1   MLDLNLDVDSTESTQNERDSITVKGVSLNQMD---ESVTSNSSVVNAEASSCIDGEDELC 57

Query: 60  STRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGE--NGGG 117
           STR V        F F+ILK     G    E  +   +A      FFP + G    +   
Sbjct: 58  STRTV-------KFQFEILK----GGGEEEEEDDDERSAVMMTKEFFPVAKGMNFMDSSA 106

Query: 118 QSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVT 177
           QSS S +D+SF + +Q           G    RV Q  S  VKKSRRGPRS+SSQYRGVT
Sbjct: 107 QSSRSTVDISFQRGKQGGDFIGSGSGGGDAS-RVMQPPSQPVKKSRRGPRSKSSQYRGVT 165

Query: 178 FYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMK 237
           FYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAA+KFRG++ADINF + DYE+D+K
Sbjct: 166 FYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVKFRGLEADINFVIGDYEEDLK 225

Query: 238 QMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLG 285
           QM NL+KEE V +LRRQS+GFSR +S+Y+GV L K G W A+M Q  G
Sbjct: 226 QMANLSKEEVVQVLRRQSSGFSRNNSRYQGVALQKIGGWGAQMEQLHG 273

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay.

Arabidopsis thaliana (taxid: 3702)

>sp|P47927|AP2_ARATH Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1

 Score =  249 bits (635), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 147/203 (72%), Positives = 161/203 (79%), Gaps = 9/203 (4%)

Query: 105 FFPASGGGENGGGQSSG----SWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVK 160
           FFP      NGGG +SG     W  + F   Q          +       V + + P+ K
Sbjct: 65  FFPEMDS--NGGGVASGFPRAHWFGVKF--CQSDLATGSSAGKATNVAAAVVEPAQPL-K 119

Query: 161 KSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG 220
           KSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG
Sbjct: 120 KSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG 179

Query: 221 VDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARM 280
           V+ADINFN+ DY+DD+KQM NLTKEEFVH+LRRQSTGF RGSSKYRGVTLHKCGRWEARM
Sbjct: 180 VEADINFNIDDYDDDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARM 239

Query: 281 GQFLGKKYIYLGLFDSEVEAARS 303
           GQFLGKKY+YLGLFD+EVEAAR+
Sbjct: 240 GQFLGKKYVYLGLFDTEVEAARA 262

Probable transcriptional activator that promotes early floral meristem identity. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS. It is also required during seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH95|TOE3_ARATH AP2-like ethylene-responsive transcription factor TOE3 OS=Arabidopsis thaliana GN=TOE3 PE=2 SV=1

 Score =  242 bits (617), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 130/148 (87%), Positives = 142/148 (95%)

Query: 156 SPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAA 215
           SP +KKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAA
Sbjct: 80  SPPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAA 139

Query: 216 IKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGR 275
           IKFRGVDADINF++ DY DD+KQM NLTKEEF+H+LRRQSTGF RGSSKYRGVTLHKCGR
Sbjct: 140 IKFRGVDADINFDIEDYLDDLKQMGNLTKEEFMHVLRRQSTGFPRGSSKYRGVTLHKCGR 199

Query: 276 WEARMGQFLGKKYIYLGLFDSEVEAARS 303
           WE+R+GQFL KKY+YLGLFD+E+EAAR+
Sbjct: 200 WESRLGQFLNKKYVYLGLFDTEIEAARA 227

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6PV67|SNZ_ARATH AP2-like ethylene-responsive transcription factor SNZ OS=Arabidopsis thaliana GN=SNZ PE=2 SV=1

 Score =  163 bits (413), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 100/121 (82%)

Query: 150 RVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAAR 209
           R  Q++  + KKSRRGPRSRSS YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTA+ AAR
Sbjct: 86  RNKQETLVMKKKSRRGPRSRSSHYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYTAAR 145

Query: 210 AYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVT 269
           AYDRAAI+FRG+ ADINF + DY+ D+++MKNL+KEEFV  LRR S   +RG SKY+   
Sbjct: 146 AYDRAAIRFRGLQADINFIVDDYKQDIEKMKNLSKEEFVQSLRRASASLARGGSKYKNTH 205

Query: 270 L 270
           +
Sbjct: 206 M 206

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6PQQ3|AIL5_ARATH AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2

 Score =  159 bits (401), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 113/161 (70%), Gaps = 11/161 (6%)

Query: 154 QSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDT 203
           ++SP  KK+      R+S YRGVT +R TGR+E+H+WD  C        G+QVYLGG+D 
Sbjct: 185 EASPTPKKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDK 244

Query: 204 AHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSS 263
              AARAYD AA+K+ G     NF +++YE ++++MK++T++EFV  LRR+S+GFSRG+S
Sbjct: 245 EDKAARAYDLAALKYWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKSSGFSRGAS 304

Query: 264 KYRGVT-LHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARS 303
            YRGVT  H+ GRW+AR+G+  G K +YLG F ++ EAA +
Sbjct: 305 MYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEA 345

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5YGP7|PLET2_ARATH AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1

 Score =  156 bits (394), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/146 (52%), Positives = 105/146 (71%), Gaps = 11/146 (7%)

Query: 169 RSSQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTAHAAARAYDRAAIKF 218
           R+S YRGVT +R TGR+E+H+WD  C        G+QVYLGG+D    AARAYD AA+K+
Sbjct: 187 RTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKY 246

Query: 219 RGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVT-LHKCGRWE 277
            G     NF + +YE ++++MKN+T++EFV  +RR+S+GFSRG+S YRGVT  H+ GRW+
Sbjct: 247 WGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQ 306

Query: 278 ARMGQFLGKKYIYLGLFDSEVEAARS 303
           AR+G+  G K +YLG F +E EAA +
Sbjct: 307 ARIGRVAGNKDLYLGTFSTEEEAAEA 332

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q6PV68|SMZ_ARATH AP2-like ethylene-responsive transcription factor SMZ OS=Arabidopsis thaliana GN=SMZ PE=2 SV=1

 Score =  155 bits (391), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/128 (72%), Positives = 108/128 (84%)

Query: 151 VTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARA 210
           + + +  +VKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTA+AAARA
Sbjct: 101 LQRNTQKMVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYAAARA 160

Query: 211 YDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTL 270
           YDRAAIKFRG+DADINF + DY  D+ +MKNL K EFV  LRR+S  F RGSSKY+G+ L
Sbjct: 161 YDRAAIKFRGLDADINFVVDDYRHDIDKMKNLNKVEFVQTLRRESASFGRGSSKYKGLAL 220

Query: 271 HKCGRWEA 278
            KC +++ 
Sbjct: 221 QKCTQFKT 228

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5YGP8|PLET1_ARATH AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1

 Score =  154 bits (390), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 114/169 (67%), Gaps = 13/169 (7%)

Query: 146 GGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWD--C--------GKQ 195
           GG + V + ++P       G   R+S YRGVT +R TGR+E+H+WD  C        G+Q
Sbjct: 157 GGALAVVETATPRRALDTFG--QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQ 214

Query: 196 VYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQS 255
           VYLGG+D    AAR+YD AA+K+ G     NF + +YE ++++MK++T++EFV  +RR+S
Sbjct: 215 VYLGGYDKEDKAARSYDLAALKYWGPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKS 274

Query: 256 TGFSRGSSKYRGVT-LHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARS 303
           +GFSRG+S YRGVT  H+ GRW+AR+G+  G K +YLG F +E EAA +
Sbjct: 275 SGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEA 323

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PFE1|AIL1_ARATH AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1

 Score =  154 bits (390), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 78/157 (49%), Positives = 110/157 (70%), Gaps = 11/157 (7%)

Query: 158 VVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTAHAA 207
           V +KS      R+SQYRGVT +R TGR+E+H+WD  C        G+QVYLGG+D    A
Sbjct: 209 VPRKSVDSYGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYDEEEKA 268

Query: 208 ARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRG 267
           ARAYD AA+K+ G    +NF L++YE +++++ N+ ++EFV +LRR S+GFSRG+S YRG
Sbjct: 269 ARAYDLAALKYWGPTTHLNFPLSNYEKEIEELNNMNRQEFVAMLRRNSSGFSRGASVYRG 328

Query: 268 VT-LHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARS 303
           VT  H+ GRW+AR+G+  G K +YLG F ++ EAA +
Sbjct: 329 VTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEA 365

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
449461037	497	PREDICTED: ethylene-responsive transcrip	0.927	0.565	0.648	5e-96
359479031	500	PREDICTED: ethylene-responsive transcrip	0.897	0.544	0.695	5e-92
255578779	499	Protein AINTEGUMENTA, putative [Ricinus	0.891	0.541	0.663	2e-89
356547208	476	PREDICTED: ethylene-responsive transcrip	0.858	0.546	0.684	7e-88
356557477	485	PREDICTED: ethylene-responsive transcrip	0.877	0.548	0.665	4e-87
297746184	478	unnamed protein product [Vitis vinifera]	0.864	0.548	0.683	7e-85
356541277	477	PREDICTED: ethylene-responsive transcrip	0.927	0.589	0.656	2e-82
350539485	474	AP2 transcription factor SlAP2e [Solanum	0.881	0.563	0.579	9e-82
334184539	464	ethylene-responsive transcription factor	0.881	0.575	0.634	2e-81
449448938	456	PREDICTED: ethylene-responsive transcrip	0.864	0.574	0.580	3e-81

>gi|449461037|ref|XP_004148250.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Cucumis sativus] gi|449515297|ref|XP_004164686.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Cucumis sativus]

 Score =  357 bits (915), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 201/310 (64%), Positives = 224/310 (72%), Gaps = 29/310 (9%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGS------SGTSNSSVVNADASSNVG 54
           M DLNLNV S ++ Q+        SVV  EK P+GS      SGTSNSS+VNAD SSN G
Sbjct: 1   MFDLNLNVDSPDAAQKED------SVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGG 54

Query: 55  DDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGEN 114
           DD+SCSTRA      +FTFNF+ILK G  + +V  + +         +F          +
Sbjct: 55  DDDSCSTRA---GGELFTFNFEILKAG-SANDVVTKELFPIGGTVNADFGILQGHNSASS 110

Query: 115 GGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSP-VVKKSRRGPRSRSSQY 173
               S  +WI+L+FD+                GE R  Q   P  VKKSRRGPRSRSSQY
Sbjct: 111 SSTSSRKNWINLAFDRSGS------------AGEGRTVQPVQPQPVKKSRRGPRSRSSQY 158

Query: 174 RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYE 233
           RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAH+AARAYDRAAIKFRGVDADINFNL+DYE
Sbjct: 159 RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYE 218

Query: 234 DDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGL 293
           DD+KQMKNL+KEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQ LGKKYIYLGL
Sbjct: 219 DDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGL 278

Query: 294 FDSEVEAARS 303
           FDSEVEAAR+
Sbjct: 279 FDSEVEAARA 288

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479031|ref|XP_002284749.2| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Vitis vinifera]

 Score =  343 bits (880), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 224/322 (69%), Positives = 241/322 (74%), Gaps = 50/322 (15%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGS------SGTSNSSVVNADASSNVG 54
           MLDLNLNV S +STQ         SVV  EK PEGS      SGTSNSS+VNA+ASSN G
Sbjct: 1   MLDLNLNVGSSDSTQHGD------SVVGSEKFPEGSGTQMDESGTSNSSIVNAEASSNGG 54

Query: 55  -DDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGE 113
            DD+SCSTRA  GD   F+ NFDILKVG D G+        N+  +R+    FP S GG 
Sbjct: 55  GDDDSCSTRA--GD--AFSLNFDILKVG-DCGS-------PNDVVTRQ---LFPMSAGGG 99

Query: 114 NGG------GQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPV------VKK 161
            GG      GQSS +WIDLSF++              GG EVRV QQ          VKK
Sbjct: 100 VGGDSVFFQGQSSSNWIDLSFNQSGTV----------GGQEVRVAQQHPQPQQQQQPVKK 149

Query: 162 SRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV 221
           SRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV
Sbjct: 150 SRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV 209

Query: 222 DADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMG 281
           DADINFNL+DY++D+KQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMG
Sbjct: 210 DADINFNLSDYDEDLKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMG 269

Query: 282 QFLGKKYIYLGLFDSEVEAARS 303
           QFLGKKYIYLGLFDSEVEAAR+
Sbjct: 270 QFLGKKYIYLGLFDSEVEAARA 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578779|ref|XP_002530247.1| Protein AINTEGUMENTA, putative [Ricinus communis] gi|223530251|gb|EEF32153.1| Protein AINTEGUMENTA, putative [Ricinus communis]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 219/330 (66%), Positives = 231/330 (70%), Gaps = 60/330 (18%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKS---------------PEGSSGTSNSSVV 45
           MLDLNLNV S ESTQ       V SV L+EK                 EGS  TSNSS+ 
Sbjct: 1   MLDLNLNVESSESTQN------VDSVTLMEKYQYQYQYQYQHQQYNYTEGSGTTSNSSIA 54

Query: 46  NADASSNVGDDESCSTRAVAG------------DNSVFTFNFDILKVGGDSGNVRNENVE 93
           NADASSN   DESCSTRA  G             N ++TFNFDILKVG         N E
Sbjct: 55  NADASSN---DESCSTRAYTGGDTISTTTDSNNKNKIYTFNFDILKVG---------NEE 102

Query: 94  QNNAASRKEFAFFPASGGGENGGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQ 153
             N A       FP     ENG G      IDLSF++QQQQ +         GGEVRV Q
Sbjct: 103 NENGAVIGTKELFPV----ENGHG------IDLSFERQQQQQE-----IIGVGGEVRVMQ 147

Query: 154 QSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDR 213
           Q    VKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDR
Sbjct: 148 QPLQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDR 207

Query: 214 AAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKC 273
           AAIKFRG+DADINFNL DY++D+KQMKNLTKEEFVHILRR STGFSRGSSKYRGVTLHKC
Sbjct: 208 AAIKFRGIDADINFNLGDYDEDLKQMKNLTKEEFVHILRRHSTGFSRGSSKYRGVTLHKC 267

Query: 274 GRWEARMGQFLGKKYIYLGLFDSEVEAARS 303
           GRWEARMGQFLGKKYIYLGLFDSEVEAAR+
Sbjct: 268 GRWEARMGQFLGKKYIYLGLFDSEVEAARA 297

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547208|ref|XP_003542008.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Glycine max]

 Score =  329 bits (844), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 213/311 (68%), Positives = 233/311 (74%), Gaps = 51/311 (16%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCS 60
           MLDLNL   + ESTQ  +DE     +VL++K PE SSGTSNSS+VNA+ SSN   ++SCS
Sbjct: 1   MLDLNL---TAESTQ--NDE----LLVLLDKFPEASSGTSNSSIVNAEGSSN---EDSCS 48

Query: 61  TRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSS 120
           TRA  GD  VFTFNF ILKV   +  V         AA+ KE   FP S   EN  GQSS
Sbjct: 49  TRA--GD--VFTFNFGILKVEAANDVV---------AAATKEL--FPVSS--ENWQGQSS 91

Query: 121 GSW-------IDLSFDKQQQQYQNQQPQQQEGGGEVRVTQ-QSSPVVKKSRRGPRSRSSQ 172
            S        +DLS D+Q               GEV+V Q Q  P VKKSRRGPRSRSSQ
Sbjct: 92  TSLFQARKSLMDLSLDQQH--------------GEVKVVQVQPQPKVKKSRRGPRSRSSQ 137

Query: 173 YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADY 232
           YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG+DADINFNL DY
Sbjct: 138 YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDY 197

Query: 233 EDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLG 292
           E+D+KQMKNL+KEEFVHILRR S+GFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLG
Sbjct: 198 EEDLKQMKNLSKEEFVHILRRHSSGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLG 257

Query: 293 LFDSEVEAARS 303
           LFDSEVEAAR+
Sbjct: 258 LFDSEVEAARA 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557477|ref|XP_003547042.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Glycine max]

 Score =  327 bits (838), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 203/305 (66%), Positives = 221/305 (72%), Gaps = 39/305 (12%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCS 60
           MLDLNLN    ESTQ N       S+VL++K PE S GTSNSSVVNA+ SSN   ++SCS
Sbjct: 1   MLDLNLNA---ESTQNNE------SLVLLDKFPEASLGTSNSSVVNAEGSSN---EDSCS 48

Query: 61  TRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSS 120
           TRA  GD  VF F+F ILKV G      NE V    A + KE   FP S          S
Sbjct: 49  TRA--GD--VFAFSFGILKVEG-----ANEVV----ATATKEL--FPVS----------S 83

Query: 121 GSWIDLSFDKQQQQYQNQQ--PQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTF 178
            +W   S     Q  +N    P   + G    V  Q  P VKKSRRGPRSRSSQYRGVTF
Sbjct: 84  ENWQGQSSTSSSQARKNLMDLPLDHQNGEVKVVQVQPQPQVKKSRRGPRSRSSQYRGVTF 143

Query: 179 YRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQ 238
           YRRTGRWESHIWDCGKQVYLGGFDTAH AARAYDRAAIKFRG+DADINF+L DYE+D+KQ
Sbjct: 144 YRRTGRWESHIWDCGKQVYLGGFDTAHIAARAYDRAAIKFRGLDADINFDLVDYEEDLKQ 203

Query: 239 MKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEV 298
           MKNL+K+EFVHILRR STGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEV
Sbjct: 204 MKNLSKQEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEV 263

Query: 299 EAARS 303
           EAAR+
Sbjct: 264 EAARA 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746184|emb|CBI16240.3| unnamed protein product [Vitis vinifera]

 Score =  320 bits (819), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 212/310 (68%), Positives = 228/310 (73%), Gaps = 48/310 (15%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGS------SGTSNSSVVNADASSNVG 54
           MLDLNLNV S +STQ         SVV  EK PEGS      SGTSNSS+VNA+ASSN G
Sbjct: 1   MLDLNLNVGSSDSTQHGD------SVVGSEKFPEGSGTQMDESGTSNSSIVNAEASSNGG 54

Query: 55  -DDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGE 113
            DD+SCSTRA  GD   F+ NFDILKVG D G+        N+  +R+    FP S GG 
Sbjct: 55  GDDDSCSTRA--GD--AFSLNFDILKVG-DCGS-------PNDVVTRQ---LFPMSAGGG 99

Query: 114 NGGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQY 173
            GG        D  F      +Q Q         +    QQ    VKKSRRGPRSRSSQY
Sbjct: 100 VGG--------DSVF------FQGQV------AQQHPQPQQQQQPVKKSRRGPRSRSSQY 139

Query: 174 RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYE 233
           RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNL+DY+
Sbjct: 140 RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYD 199

Query: 234 DDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGL 293
           +D+KQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGL
Sbjct: 200 EDLKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGL 259

Query: 294 FDSEVEAARS 303
           FDSEVEAAR+
Sbjct: 260 FDSEVEAARA 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541277|ref|XP_003539105.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Glycine max]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 206/314 (65%), Positives = 224/314 (71%), Gaps = 33/314 (10%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEG------SSGTSNSSVVNADASSNVG 54
           MLDLNLN    E T   S+ E   S + +EK P+G       SGTSNSSVVNAD SSN G
Sbjct: 1   MLDLNLNA---EWTDSFSNGE---SPLPLEKFPDGLRNQMAESGTSNSSVVNADGSSNGG 54

Query: 55  DDE-SCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGE 113
            DE S STRA   D+   TFNFDILKV G +G V  E               FP    G 
Sbjct: 55  GDEDSDSTRAA--DDVYTTFNFDILKVEGANGFVTKE--------------LFPVMSEGA 98

Query: 114 NGGGQSSGS----WIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSR 169
            G   SS S    ++DLSFD         +  Q +   + +   Q+    KKSRRGPRSR
Sbjct: 99  KGHATSSFSGTNGFVDLSFDGDGGNTSEMKMLQPQNQNQTQTRTQTQQPAKKSRRGPRSR 158

Query: 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNL 229
           SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNL
Sbjct: 159 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNL 218

Query: 230 ADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYI 289
           +DYEDD+KQM+NL+KEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYI
Sbjct: 219 SDYEDDLKQMQNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYI 278

Query: 290 YLGLFDSEVEAARS 303
           YLGLFDSEVEAAR+
Sbjct: 279 YLGLFDSEVEAARA 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539485|ref|NP_001233891.1| AP2 transcription factor SlAP2e [Solanum lycopersicum] gi|333123376|gb|AEF28823.1| AP2 transcription factor SlAP2e [Solanum lycopersicum]

 Score =  309 bits (792), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 185/319 (57%), Positives = 216/319 (67%), Gaps = 52/319 (16%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCS 60
           MLDLN++V+       N+D   +  V L+++S      TSNSS+ NA+A+++ GD++SC+
Sbjct: 1   MLDLNVSVI------YNND---LPQVSLLDES-----ATSNSSLRNAEATTSAGDEDSCA 46

Query: 61  TRAVAGDNSVFTFNFDILKVGG-----DSGNVRNENVEQNNAASRKEFA---FFPASGGG 112
               A       FNF ILKV G      S N   E   +N   +  +F     FP   G 
Sbjct: 47  GELXA-------FNFGILKVEGAETSRSSNNDDEEGYGKNQRVTHSQFVTRQLFPVDDGE 99

Query: 113 ENG--------GGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRR 164
            N             SG+ I     +  QQ + +QP+QQ               VKKSRR
Sbjct: 100 LNRKQTDRVILSSARSGTSIGFGDVRIIQQQRTEQPKQQ---------------VKKSRR 144

Query: 165 GPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDAD 224
           GPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAH AARAYDRAAIKFRGVDAD
Sbjct: 145 GPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHTAARAYDRAAIKFRGVDAD 204

Query: 225 INFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFL 284
           INF+L+DYE+DM+QMKNL KEEFVH+LRR STGFSRGSSK+RGVTLHKCGRWEARMGQFL
Sbjct: 205 INFSLSDYEEDMQQMKNLGKEEFVHLLRRHSTGFSRGSSKFRGVTLHKCGRWEARMGQFL 264

Query: 285 GKKYIYLGLFDSEVEAARS 303
           GKKYIYLGLFDSEVEAAR+
Sbjct: 265 GKKYIYLGLFDSEVEAARA 283

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184539|ref|NP_001189625.1| ethylene-responsive transcription factor RAP2-7 [Arabidopsis thaliana] gi|330253045|gb|AEC08139.1| ethylene-responsive transcription factor RAP2-7 [Arabidopsis thaliana]

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 203/320 (63%), Positives = 223/320 (69%), Gaps = 53/320 (16%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGS-------SGTSNSSVVNADASSNV 53
           MLDLNLN  S ESTQ   D        L  ++ + S       SGTS SSV+NAD     
Sbjct: 1   MLDLNLNADSPESTQYGGDS------YLDRQTSDNSAGNRVEESGTSTSSVINAD----- 49

Query: 54  GDDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGG- 112
           GD++SCSTRA       FT +FDILKVG  SG    +     +A+  KEF  FP SG   
Sbjct: 50  GDEDSCSTRA-------FTLSFDILKVGSSSGG---DESPAASASVTKEF--FPVSGDCG 97

Query: 113 ---ENGGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPV------VKKSR 163
              +  G  SS +WIDLSFD+              G GE ++             VKKSR
Sbjct: 98  HLRDVEGSSSSRNWIDLSFDRI-------------GDGETKLVTPVPTPAPVPAQVKKSR 144

Query: 164 RGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDA 223
           RGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDA
Sbjct: 145 RGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDA 204

Query: 224 DINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQF 283
           DINF L DYE+DMKQ++NL+KEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQF
Sbjct: 205 DINFTLGDYEEDMKQVQNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQF 264

Query: 284 LGKKYIYLGLFDSEVEAARS 303
           LGKKYIYLGLFDSEVEAAR+
Sbjct: 265 LGKKYIYLGLFDSEVEAARA 284

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448938|ref|XP_004142222.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Cucumis sativus] gi|449518747|ref|XP_004166397.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Cucumis sativus]

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 176/303 (58%), Positives = 202/303 (66%), Gaps = 41/303 (13%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCS 60
           MLDLNL ++  E T   SD   +    L   SP G     +SSV NAD S+  GDD+S S
Sbjct: 1   MLDLNLCILPGEFT---SDGTGLHPFNL---SPSGVESPISSSVHNADHSNVNGDDDS-S 53

Query: 61  TRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSS 120
           + A  G    FTF+F IL          N N +Q     R   A FP +GG  +    S 
Sbjct: 54  SNADCG----FTFSFSILN---------NSNDDQ-----RDRTAQFPVAGGF-SSDVYSQ 94

Query: 121 GSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYR 180
             W D  F +                    V Q+S+   KK RRGP+SRSSQYRGVT+YR
Sbjct: 95  RKWADSDFVRATNGI---------------VVQKSAHPAKKGRRGPKSRSSQYRGVTYYR 139

Query: 181 RTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMK 240
           RTGRWESHIWD GKQVYLGGFDTAH+AARAYDRAAIKFRGV ADINFN++DY +++KQM 
Sbjct: 140 RTGRWESHIWDSGKQVYLGGFDTAHSAARAYDRAAIKFRGVHADINFNISDYNEEIKQMG 199

Query: 241 NLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEA 300
           N +KEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKY+YLGLFDSE+EA
Sbjct: 200 NFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEA 259

Query: 301 ARS 303
           AR+
Sbjct: 260 ARA 262

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
TAIR|locus:2005493	432	AP2 "APETALA 2" [Arabidopsis t	0.501	0.351	0.738	3.9e-60
TAIR|locus:2155598	352	TOE3 "target of early activati	0.488	0.420	0.729	1.5e-58
TAIR|locus:2082732	346	SMZ "SCHLAFMUTZE" [Arabidopsis	0.412	0.361	0.576	1.1e-38
TAIR|locus:2056048	325	SNZ "SCHNARCHZAPFEN" [Arabidop	0.386	0.36	0.555	1.7e-34
TAIR|locus:2173009	558	AIL5 "AINTEGUMENTA-like 5" [Ar	0.495	0.268	0.428	2e-30
TAIR|locus:2030265	415	AT1G72570 [Arabidopsis thalian	0.498	0.363	0.419	3e-30
TAIR|locus:2091891	574	PLT1 "PLETHORA 1" [Arabidopsis	0.514	0.271	0.408	5e-30
TAIR|locus:2008216	568	PLT2 "PLETHORA 2" [Arabidopsis	0.432	0.230	0.464	1.7e-29
TAIR|locus:2137559	555	ANT "AINTEGUMENTA" [Arabidopsi	0.524	0.286	0.411	3.3e-29
TAIR|locus:2200477	345	ADAP "ARIA-interacting double	0.425	0.373	0.464	3.4e-29

TAIR|locus:2005493 AP2 "APETALA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 113/153 (73%), Positives = 124/153 (81%)

Query:   151 VTQQSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTXXXXXXX 210
             V + + P+ KK          QYRGVTFYRRTGRWESHIWDCGKQVYLGGFDT       
Sbjct:   111 VVEPAQPL-KKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARA 169

Query:   211 XXXXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTL 270
                  IKFRGV+ADINFN+ DY+DD+KQM NLTKEEFVH+LRRQSTGF RGSSKYRGVTL
Sbjct:   170 YDRAAIKFRGVEADINFNIDDYDDDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL 229

Query:   271 HKCGRWEARMGQFLGKKYIYLGLFDSEVEAARS 303
             HKCGRWEARMGQFLGKKY+YLGLFD+EVEAAR+
Sbjct:   230 HKCGRWEARMGQFLGKKYVYLGLFDTEVEAARA 262

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0010073 "meristem maintenance" evidence=IMP

GO:0009888 "tissue development" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA;TAS

GO:0048481 "ovule development" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009908 "flower development" evidence=TAS

GO:0019953 "sexual reproduction" evidence=TAS

TAIR|locus:2155598 TOE3 "target of early activation tagged (EAT) 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 108/148 (72%), Positives = 120/148 (81%)

Query:   156 SPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTXXXXXXXXXXXX 215
             SP +KK          QYRGVTFYRRTGRWESHIWDCGKQVYLGGFDT            
Sbjct:    80 SPPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAA 139

Query:   216 IKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGR 275
             IKFRGVDADINF++ DY DD+KQM NLTKEEF+H+LRRQSTGF RGSSKYRGVTLHKCGR
Sbjct:   140 IKFRGVDADINFDIEDYLDDLKQMGNLTKEEFMHVLRRQSTGFPRGSSKYRGVTLHKCGR 199

Query:   276 WEARMGQFLGKKYIYLGLFDSEVEAARS 303
             WE+R+GQFL KKY+YLGLFD+E+EAAR+
Sbjct:   200 WESRLGQFLNKKYVYLGLFDTEIEAARA 227

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009408 "response to heat" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2082732 SMZ "SCHLAFMUTZE" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 72/125 (57%), Positives = 85/125 (68%)

Query:   153 QQSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTXXXXXXXXX 212
             + +  +VKK          QYRGVTFYRRTGRWESHIWDCGKQVYLGGFDT         
Sbjct:   103 RNTQKMVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYAAARAYD 162

Query:   213 XXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHK 272
                IKFRG+DADINF + DY  D+ +MKNL K EFV  LRR+S  F RGSSKY+G+ L K
Sbjct:   163 RAAIKFRGLDADINFVVDDYRHDIDKMKNLNKVEFVQTLRRESASFGRGSSKYKGLALQK 222

Query:   273 CGRWE 277
             C +++
Sbjct:   223 CTQFK 227

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009658 "chloroplast organization" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2056048 SNZ "SCHNARCHZAPFEN" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 65/117 (55%), Positives = 78/117 (66%)

Query:   150 RVTQQSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTXXXXXX 209
             R  Q++  + KK           YRGVTFYRRTGRWESHIWDCGKQVYLGGFDT      
Sbjct:    86 RNKQETLVMKKKSRRGPRSRSSHYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYTAAR 145

Query:   210 XXXXXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYR 266
                   I+FRG+ ADINF + DY+ D+++MKNL+KEEFV  LRR S   +RG SKY+
Sbjct:   146 AYDRAAIRFRGLQADINFIVDDYKQDIEKMKNLSKEEFVQSLRRASASLARGGSKYK 202

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2173009 AIL5 "AINTEGUMENTA-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 2.0e-30, P = 2.0e-30
 Identities = 69/161 (42%), Positives = 101/161 (62%)

Query:   154 QSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDT 203
             ++SP  KK           YRGVT +R TGR+E+H+WD  C        G+QVYLGG+D 
Sbjct:   185 EASPTPKKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDK 244

Query:   204 XXXXXXXXXXXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSS 263
                         +K+ G     NF +++YE ++++MK++T++EFV  LRR+S+GFSRG+S
Sbjct:   245 EDKAARAYDLAALKYWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKSSGFSRGAS 304

Query:   264 KYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAARS 303
              YRGVT H + GRW+AR+G+  G K +YLG F ++ EAA +
Sbjct:   305 MYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEA 345

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009791 "post-embryonic development" evidence=IMP

GO:0009845 "seed germination" evidence=RCA;IMP

GO:0040019 "positive regulation of embryonic development" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS;IMP

TAIR|locus:2030265 AT1G72570 [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 68/162 (41%), Positives = 99/162 (61%)

Query:   153 QQSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFD 202
             Q    V +K          QYRGVT +R TGR+E+H+WD  C        G+QVYLGG+D
Sbjct:   204 QVKESVPRKSVDSYGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYD 263

Query:   203 TXXXXXXXXXXXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGS 262
                          +K+ G    +NF L++YE +++++ N+ ++EFV +LRR S+GFSRG+
Sbjct:   264 EEEKAARAYDLAALKYWGPTTHLNFPLSNYEKEIEELNNMNRQEFVAMLRRNSSGFSRGA 323

Query:   263 SKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAARS 303
             S YRGVT H + GRW+AR+G+  G K +YLG F ++ EAA +
Sbjct:   324 SVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEA 365

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2091891 PLT1 "PLETHORA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 5.0e-30, P = 5.0e-30
 Identities = 69/169 (40%), Positives = 104/169 (61%)

Query:   146 GGEVRVTQQSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWD--C--------GKQ 195
             GG + V + ++P  ++           YRGVT +R TGR+E+H+WD  C        G+Q
Sbjct:   157 GGALAVVETATP--RRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQ 214

Query:   196 VYLGGFDTXXXXXXXXXXXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQS 255
             VYLGG+D             +K+ G     NF + +YE ++++MK++T++EFV  +RR+S
Sbjct:   215 VYLGGYDKEDKAARSYDLAALKYWGPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKS 274

Query:   256 TGFSRGSSKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAARS 303
             +GFSRG+S YRGVT H + GRW+AR+G+  G K +YLG F +E EAA +
Sbjct:   275 SGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEA 323

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2008216 PLT2 "PLETHORA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 1.7e-29, P = 1.7e-29
 Identities = 66/142 (46%), Positives = 94/142 (66%)

Query:   173 YRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTXXXXXXXXXXXXIKFRGVD 222
             YRGVT +R TGR+E+H+WD  C        G+QVYLGG+D             +K+ G  
Sbjct:   191 YRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPS 250

Query:   223 ADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLH-KCGRWEARMG 281
                NF + +YE ++++MKN+T++EFV  +RR+S+GFSRG+S YRGVT H + GRW+AR+G
Sbjct:   251 TTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIG 310

Query:   282 QFLGKKYIYLGLFDSEVEAARS 303
             +  G K +YLG F +E EAA +
Sbjct:   311 RVAGNKDLYLGTFSTEEEAAEA 332

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2137559 ANT "AINTEGUMENTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 3.3e-29, P = 3.3e-29
 Identities = 70/170 (41%), Positives = 101/170 (59%)

Query:   145 GGGEVRVTQQSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDC----------GK 194
             G  +V V  Q   V +K          QYRGVT +R TGR+E+H+WD           G+
Sbjct:   256 GQEDVVVVGQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSFKKEGHSRKGR 315

Query:   195 QVYLGGFDTXXXXXXXXXXXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQ 254
             QVYLGG+D             +K+ G     NF+  +Y+ +++ MKN+T++E+V  LRR+
Sbjct:   316 QVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFSAENYQKEIEDMKNMTRQEYVAHLRRK 375

Query:   255 STGFSRGSSKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAARS 303
             S+GFSRG+S YRGVT H + GRW+AR+G+  G K +YLG F ++ EAA +
Sbjct:   376 SSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEA 425

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0042127 "regulation of cell proliferation" evidence=RCA;IMP

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=IMP;RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0007276 "gamete generation" evidence=IMP

TAIR|locus:2200477 ADAP "ARIA-interacting double AP2 domain protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 65/140 (46%), Positives = 92/140 (65%)

Query:   173 YRGVTFYRRTGRWESHIWDC----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGVD 222
             +RGVT +R TGR+E+H+WD           G+QVYLG +D             +K+ G D
Sbjct:    59 HRGVTRHRWTGRYEAHLWDKNSWNETQTKKGRQVYLGAYDEEDAAARAYDLAALKYWGRD 118

Query:   223 ADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKC-GRWEARMG 281
               +NF L +YE+D+K+M++ +KEE++  LRR+S+GFSRG SKYRGV  H   GRWEAR+G
Sbjct:   119 TILNFPLCNYEEDIKEMESQSKEEYIGSLRRKSSGFSRGVSKYRGVAKHHHNGRWEARIG 178

Query:   282 QFLGKKYIYLGLFDSEVEAA 301
             +  G KY+YLG + ++ EAA
Sbjct:   179 RVFGNKYLYLGTYATQEEAA 198

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IMP

GO:0040008 "regulation of growth" evidence=IMP

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IPI

GO:0045723 "positive regulation of fatty acid biosynthetic process" evidence=IGI;IMP

GO:1901959 "positive regulation of cutin biosynthetic process" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=ISS

GO:0003677 "DNA binding" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.4__825__AT2G28550.1 annotation not avaliable (444 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	303
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	4e-25
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	5e-23
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-13
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-12
pfam00847	53	pfam00847, AP2, AP2 domain	4e-10
pfam00847	53	pfam00847, AP2, AP2 domain	4e-04

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 95.0 bits (237), Expect = 4e-25
 Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 3/64 (4%)

Query: 172 QYRGVTFYRRTGRWESHIWD--CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNL 229
           +YRGV   R  G+W + I D   GK+V+LG FDTA  AARAYDRAA KFRG  A +NF  
Sbjct: 1   KYRGVRQ-RPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 230 ADYE 233
           + Y+
Sbjct: 60  SLYD 63

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 89.3 bits (222), Expect = 5e-23
 Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 3/59 (5%)

Query: 171 SQYRGVTFYRRTGRWESHIWDC--GKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINF 227
           S+YRGV   R  G+W + I D   G++++LG FDTA  AARAYDRAA+K RG  A +NF
Sbjct: 1   SKYRGVRQ-RPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNF 58

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 264 KYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARS 303
           KYRGV     G+W A +      K ++LG FD+  EAAR+
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARA 40

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 60.4 bits (147), Expect = 3e-12
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 263 SKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARS 303
           SKYRGV     G+W A +    G + I+LG FD+  EAAR+
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARA 41

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 54.2 bits (131), Expect = 4e-10
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 171 SQYRGVTFYRRTGRWESHIWDCG----KQVYLGGFDTAHAAARAYDRAAIKFRG 220
           S Y+GV + +R GRW + I D G    K+  LG F T   AARA   A +K RG
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTEE-AARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 263 SKYRGVTLHKC-GRWEA--RMGQFLGKKYIYLGLFDSEVEAAR 302
           S Y+GV   K  GRW A  R      KK   LG F +E EAAR
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTE-EAAR 42

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	303
PHA00280	121	putative NHN endonuclease	99.94
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.77
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.74
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.25
PHA00280	121	putative NHN endonuclease	99.14
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.04
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	98.9
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	98.27
PF13392	46	HNH_3: HNH endonuclease; PDB: 1U3E_M.	96.25

>PHA00280 putative NHN endonuclease

Probab=99.94  E-value=8.3e-27  Score=195.02  Aligned_cols=94  Identities=17%  Similarity=0.184  Sum_probs=86.2

Q ss_pred             Ccc-cccccccccccCCccccccCCCcccccccCCccccCCCCCCCCCCCCceeeeEeeCCCeEEEEEEeCCEEEEecCC
Q 022082          123 WID-LSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGF  201 (303)
Q Consensus       123 ~~~-~~iDhi~~~~~~n~~~Nlr~~~~~t~~~qN~~n~kk~r~~~~~~tSgyrGV~~~k~~gkW~A~I~~~gK~~~LG~F  201 (303)
                      ||. +.|||||+++.||+|+|||+   +| .+||++|.++.    ++|+|||+||+|++..+||+|+|+++||+++||+|
T Consensus        26 ~P~g~~VdHidg~~~dnri~NLr~---~T-~~eN~~N~~~~----~~N~SG~kGV~~~k~~~kw~A~I~~~gK~~~lG~f   97 (121)
T PHA00280         26 IPKGYYIDHIDGNPLNDALDNLRL---AL-PKENSWNMKTP----KSNTSGLKGLSWSKEREMWRGTVTAEGKQHNFRSR   97 (121)
T ss_pred             CCCCCEEEcCCCCCCCCcHHHhhh---cC-HHHHhcccCCC----CCCCCCCCeeEEecCCCeEEEEEEECCEEEEcCCC
Confidence            554 78999999999999999998   77 88888887665    89999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHhcCCCccc
Q 022082          202 DTAHAAARAYDRAAIKFRGVDADI  225 (303)
Q Consensus       202 ~t~eeAA~AYd~Aa~~~~G~~a~~  225 (303)
                      +++|+|+.||+ ++.++||+||..
T Consensus        98 ~~~e~A~~a~~-~~~~lhGeFa~~  120 (121)
T PHA00280         98 DLLEVVAWIYR-TRRELHGQFARF  120 (121)
T ss_pred             CCHHHHHHHHH-HHHHHhhccccC
Confidence            99999999997 778999998853

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.77  E-value=7.1e-19  Score=129.78  Aligned_cols=59  Identities=53%  Similarity=0.862  Sum_probs=55.8

Q ss_pred             CCceeeeEeeCCCeEEEEEEeC--CEEEEecCCCcHHHHHHHHHHHHHHhcCCCcccCCCCC
Q 022082          171 SQYRGVTFYRRTGRWESHIWDC--GKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLA  230 (303)
Q Consensus       171 SgyrGV~~~k~~gkW~A~I~~~--gK~~~LG~F~t~eeAA~AYd~Aa~~~~G~~a~~NFp~~  230 (303)
                      |+|+||++++. |||+|+|+++  ||++|||+|+|+|||+.|||.|+++++|.++.+|||.+
T Consensus         1 s~~~GV~~~~~-gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPW-GKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCC-CcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            79999998765 9999999999  99999999999999999999999999999999999863

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.74  E-value=4.4e-18  Score=127.00  Aligned_cols=61  Identities=57%  Similarity=0.920  Sum_probs=57.7

Q ss_pred             CceeeeEeeCCCeEEEEEEe--CCEEEEecCCCcHHHHHHHHHHHHHHhcCCCcccCCCCCcch
Q 022082          172 QYRGVTFYRRTGRWESHIWD--CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYE  233 (303)
Q Consensus       172 gyrGV~~~k~~gkW~A~I~~--~gK~~~LG~F~t~eeAA~AYd~Aa~~~~G~~a~~NFp~~~y~  233 (303)
                      +|+||++ ++.|||+|+|++  ++|+++||+|+|+||||.|||.|+++++|.++.+|||.++|+
T Consensus         1 ~~kGV~~-~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQ-RPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEe-CCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            5899997 466999999999  999999999999999999999999999999999999999986

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.25  E-value=1.6e-11  Score=88.55  Aligned_cols=51  Identities=33%  Similarity=0.549  Sum_probs=47.2

Q ss_pred             CCceeeeEeeCCCeEEEEEEeC-----CEEEEecCCCcHHHHHHHHHHHHHHhcCC
Q 022082          171 SQYRGVTFYRRTGRWESHIWDC-----GKQVYLGGFDTAHAAARAYDRAAIKFRGV  221 (303)
Q Consensus       171 SgyrGV~~~k~~gkW~A~I~~~-----gK~~~LG~F~t~eeAA~AYd~Aa~~~~G~  221 (303)
                      |+|+||+|++..++|+|+|++.     +|.++||.|++++||++||+.++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            7999999999999999999983     49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PHA00280 putative NHN endonuclease

Probab=99.14  E-value=1.3e-10  Score=97.61  Aligned_cols=90  Identities=13%  Similarity=0.058  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhcCCCcc---cCCC-CCcchhhHHHhhcCCHHHHHHHhhccccCcccCCCcccceeeec-CCeeeEEEce
Q 022082          208 ARAYDRAAIKFRGVDAD---INFN-LADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQ  282 (303)
Q Consensus       208 A~AYd~Aa~~~~G~~a~---~NFp-~~~y~~eL~qLrslSkEE~v~~LRr~S~g~~r~sSkYRGVs~~k-~GKW~ArIg~  282 (303)
                      ..+...+...++|.-..   +.+- -......+.+|+.++..+...+.+..+    .++|+|+||+|++ .+||+|+|  
T Consensus        12 ~~~Hrlvw~~~~G~~P~g~~VdHidg~~~dnri~NLr~~T~~eN~~N~~~~~----~N~SG~kGV~~~k~~~kw~A~I--   85 (121)
T PHA00280         12 PRRHIQVWEAANGPIPKGYYIDHIDGNPLNDALDNLRLALPKENSWNMKTPK----SNTSGLKGLSWSKEREMWRGTV--   85 (121)
T ss_pred             hhHhHhhhHHHHCCCCCCCEEEcCCCCCCCCcHHHhhhcCHHHHhcccCCCC----CCCCCCCeeEEecCCCeEEEEE--
Confidence            34555666677775321   1111 122335789999999999998866543    7889999999984 89999999  


Q ss_pred             ecCCeEEEecCCCCHHHHhcC
Q 022082          283 FLGKKYIYLGLFDSEVEAARS  303 (303)
Q Consensus       283 ~~ggK~~~LG~F~teeEAArA  303 (303)
                      .+++|.++||.|+++|+|+.|
T Consensus        86 ~~~gK~~~lG~f~~~e~A~~a  106 (121)
T PHA00280         86 TAEGKQHNFRSRDLLEVVAWI  106 (121)
T ss_pred             EECCEEEEcCCCCCHHHHHHH
Confidence            789999999999999999864

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.04  E-value=1.6e-10  Score=85.22  Aligned_cols=39  Identities=46%  Similarity=0.734  Sum_probs=35.6

Q ss_pred             CcccceeeecCCeeeEEEceecC--CeEEEecCCCCHHHHhcC
Q 022082          263 SKYRGVTLHKCGRWEARMGQFLG--KKYIYLGLFDSEVEAARS  303 (303)
Q Consensus       263 SkYRGVs~~k~GKW~ArIg~~~g--gK~~~LG~F~teeEAArA  303 (303)
                      |+|+||++++.|||+|+|  .+.  +|.++||+|+|+||||+|
T Consensus         1 s~~~GV~~~~~gkw~A~I--~~~~~gk~~~lG~f~t~eeAa~A   41 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEI--RDPSGGRRIWLGTFDTAEEAARA   41 (61)
T ss_pred             CCccCEEECCCCcEEEEE--EeCCCCceEccCCCCCHHHHHHH
Confidence            689999998889999999  555  999999999999999976

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=98.90  E-value=1.2e-09  Score=81.47  Aligned_cols=40  Identities=43%  Similarity=0.708  Sum_probs=35.7

Q ss_pred             cccceeeecCCeeeEEEceecCCeEEEecCCCCHHHHhcC
Q 022082          264 KYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARS  303 (303)
Q Consensus       264 kYRGVs~~k~GKW~ArIg~~~ggK~~~LG~F~teeEAArA  303 (303)
                      +|+||++++.|||+|+|....++|.++||+|+|+||||.|
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~A   40 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARA   40 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHH
Confidence            5899998888999999954448999999999999999976

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=98.27  E-value=9.8e-07  Score=63.43  Aligned_cols=41  Identities=39%  Similarity=0.670  Sum_probs=34.0

Q ss_pred             Ccccceeeec-CCeeeEEEceec-C--CeEEEecCCCCHHHHhcC
Q 022082          263 SKYRGVTLHK-CGRWEARMGQFL-G--KKYIYLGLFDSEVEAARS  303 (303)
Q Consensus       263 SkYRGVs~~k-~GKW~ArIg~~~-g--gK~~~LG~F~teeEAArA  303 (303)
                      |+|+||++++ .++|+|+|.... +  +|.++||.|++++||++|
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~   45 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRA   45 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHH
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHH
Confidence            6899999985 899999996421 1  499999999999999864

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF13392 HNH_3: HNH endonuclease; PDB: 1U3E_M

Probab=96.25  E-value=0.00068  Score=47.27  Aligned_cols=22  Identities=9%  Similarity=0.169  Sum_probs=15.6

Q ss_pred             cccccccccccccCCccccccC
Q 022082          124 IDLSFDKQQQQYQNQQPQQQEG  145 (303)
Q Consensus       124 ~~~~iDhi~~~~~~n~~~Nlr~  145 (303)
                      .++.|||+|+++.+|+++||+.
T Consensus        17 ~~~~v~H~~~~~~~n~~~NL~~   38 (46)
T PF13392_consen   17 EGYVVDHKDGNKTDNRPENLRW   38 (46)
T ss_dssp             TT-EEEETTS-TT---GGGEEE
T ss_pred             CCCEEEeCCCCCCCCCHHHceE
Confidence            4579999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	303
1gcc_A	63	Ethylene responsive element binding factor 1; tran	3e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 67.7 bits (166), Expect = 3e-15
 Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 6/60 (10%)

Query: 172 QYRGVTFYRRT-GRWESHIWD---CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINF 227
            YRGV   +R  G++ + I D    G +V+LG F+TA  AA AYDRAA + RG  A +NF
Sbjct: 2   HYRGVR--QRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 38/245 (15%), Positives = 72/245 (29%), Gaps = 57/245 (23%)

Query: 71  FTFNFDILKVGGDSGNV-RNENVE----QNNAASRKEFAFFPASGGGENGGGQSSGSWID 125
           F  NFD   V     ++   E ++      +A S     F+      E    +     + 
Sbjct: 29  FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88

Query: 126 LSFD--KQQQQYQNQQPQQQEGG--GEVRVTQQSSPVVKK---SRRGP----RS-----R 169
           +++       + + +QP         +       + V  K   SR  P    R      R
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINF-- 227
            ++   V      G         GK   +     A     +Y         +     F  
Sbjct: 149 PAKN--VLIDGVLG--------SGKTW-V-----ALDVCLSYKVQCKMDFKI-----FWL 187

Query: 228 NLADY---EDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFL 284
           NL +    E  ++ ++ L     ++ +    T  S  SS  +     +    +A + + L
Sbjct: 188 NLKNCNSPETVLEMLQKL-----LYQIDPNWTSRSDHSSNIK----LRIHSIQAELRRLL 238

Query: 285 -GKKY 288
             K Y
Sbjct: 239 KSKPY 243

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	303
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.8
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.06
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	98.97
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	96.65
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	89.96

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.80  E-value=5.7e-20  Score=136.53  Aligned_cols=58  Identities=48%  Similarity=0.751  Sum_probs=54.3

Q ss_pred             CceeeeEeeCCCeEEEEEEe---CCEEEEecCCCcHHHHHHHHHHHHHHhcCCCcccCCCCC
Q 022082          172 QYRGVTFYRRTGRWESHIWD---CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLA  230 (303)
Q Consensus       172 gyrGV~~~k~~gkW~A~I~~---~gK~~~LG~F~t~eeAA~AYd~Aa~~~~G~~a~~NFp~~  230 (303)
                      +|+||+++ ++|||+|+|++   +|+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         2 ~yrGV~~r-~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQR-PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEE-TTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeC-CCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            69999974 68999999998   589999999999999999999999999999999999964

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.06  E-value=6.4e-11  Score=87.63  Aligned_cols=40  Identities=28%  Similarity=0.523  Sum_probs=35.2

Q ss_pred             cccceeeecCCeeeEEEceec-CCeEEEecCCCCHHHHhcC
Q 022082          264 KYRGVTLHKCGRWEARMGQFL-GKKYIYLGLFDSEVEAARS  303 (303)
Q Consensus       264 kYRGVs~~k~GKW~ArIg~~~-ggK~~~LG~F~teeEAArA  303 (303)
                      +|+||++++.|||+|+|.... .+++++||+|+|+||||+|
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~A   42 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALA   42 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHH
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHH
Confidence            699999988999999996443 4789999999999999986

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=98.97  E-value=9.5e-12  Score=107.90  Aligned_cols=78  Identities=8%  Similarity=-0.022  Sum_probs=64.0

Q ss_pred             CcccccccccccccCCccccccCCCcccccccCCccccCCCCCCCCCCCCceeeeEeeCCCeEEEEEEeCCEEEEecCCC
Q 022082          123 WIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFD  202 (303)
Q Consensus       123 ~~~~~iDhi~~~~~~n~~~Nlr~~~~~t~~~qN~~n~kk~r~~~~~~tSgyrGV~~~k~~gkW~A~I~~~gK~~~LG~F~  202 (303)
                      +++++|||||+++.||+++|||+   +| .++|+.+..+.    ..+ ...+||.+ +..++|.+.|.++ +.++||.|.
T Consensus        68 ~~~~~v~H~dg~k~nn~~~NL~~---~t-~~eN~~~~~~~----~~~-~~~~g~~~-~~~~k~~~vi~~~-~~~~~~~f~  136 (174)
T 1u3e_M           68 EEGLVVDHKDGNKDNNLSTNLRW---VT-QKINVENQMSR----GTL-NVSKAQQI-AKIKNQKPIIVIS-PDGIEKEYP  136 (174)
T ss_dssp             CTTCEEEETTSCTTCCCGGGEEE---EC-HHHHHHHHHHH----TCC-CCHHHHHH-HHHHTCCCEEEEC-TTSCEEEES
T ss_pred             CCCCEEEcCCCCCCCCCHHHcEE---CC-HHHHhhccccc----Ccc-cceeeeee-ccCCCCceEEEEc-CCceEEeeC
Confidence            45689999999999999999998   77 77877776554    111 12578887 7778899999998 778899999


Q ss_pred             cHHHHHHHH
Q 022082          203 TAHAAARAY  211 (303)
Q Consensus       203 t~eeAA~AY  211 (303)
                      |.+|||++|
T Consensus       137 s~~eAa~~~  145 (174)
T 1u3e_M          137 STKCACEEL  145 (174)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            999999986

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=96.65  E-value=0.0018  Score=49.22  Aligned_cols=29  Identities=28%  Similarity=0.536  Sum_probs=25.9

Q ss_pred             CCCCCceeeeEeeCCCeEEEEEEeCCEEE
Q 022082          168 SRSSQYRGVTFYRRTGRWESHIWDCGKQV  196 (303)
Q Consensus       168 ~~tSgyrGV~~~k~~gkW~A~I~~~gK~~  196 (303)
                      ..+|||+||+|+++.+.|.|+-..+|++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence            46899999999999999999999998864

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=89.96  E-value=0.018  Score=49.31  Aligned_cols=62  Identities=8%  Similarity=-0.043  Sum_probs=44.8

Q ss_pred             hhHHHhhcCCHHHHHHHhhccccCcccCCCcccceeeecCCeeeEEEceecCCeEEEecCCCCHHHHhcC
Q 022082          234 DDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARS  303 (303)
Q Consensus       234 ~eL~qLrslSkEE~v~~LRr~S~g~~r~sSkYRGVs~~k~GKW~ArIg~~~ggK~~~LG~F~teeEAArA  303 (303)
                      ..+.+|+-++..|.........     ..+..+||.+.+.++|.+.|  ... +..+||.|.|.+|||+|
T Consensus        83 n~~~NL~~~t~~eN~~~~~~~~-----~~~~~~g~~~~~~~k~~~vi--~~~-~~~~~~~f~s~~eAa~~  144 (174)
T 1u3e_M           83 NLSTNLRWVTQKINVENQMSRG-----TLNVSKAQQIAKIKNQKPII--VIS-PDGIEKEYPSTKCACEE  144 (174)
T ss_dssp             CCGGGEEEECHHHHHHHHHHHT-----CCCCHHHHHHHHHHTCCCEE--EEC-TTSCEEEESCHHHHHHH
T ss_pred             CCHHHcEECCHHHHhhcccccC-----cccceeeeeeccCCCCceEE--EEc-CCceEEeeCCHHHHHHH
Confidence            4688999999999987755432     11225677663356799999  444 55689999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	303
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	5e-21
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	4e-09

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 82.4 bits (204), Expect = 5e-21
 Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 172 QYRGVTFYRRTGRWESHIWD---CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINF 227
            YRGV   R  G++ + I D    G +V+LG F+TA  AA AYDRAA + RG  A +NF
Sbjct: 2   HYRGVR-QRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 50.1 bits (120), Expect = 4e-09
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 264 KYRGVTLHKCGRWEARMGQFLGK-KYIYLGLFDSEVEAAR 302
            YRGV     G++ A +         ++LG F++  +AA 
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAAL 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	303
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.8
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.14
d1u3em1	105	Intron-encoded homing endonuclease I-HmuI {Bacteri	96.53

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=1.7e-20  Score=137.64  Aligned_cols=58  Identities=48%  Similarity=0.751  Sum_probs=53.5

Q ss_pred             CceeeeEeeCCCeEEEEEEe---CCEEEEecCCCcHHHHHHHHHHHHHHhcCCCcccCCCCC
Q 022082          172 QYRGVTFYRRTGRWESHIWD---CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLA  230 (303)
Q Consensus       172 gyrGV~~~k~~gkW~A~I~~---~gK~~~LG~F~t~eeAA~AYd~Aa~~~~G~~a~~NFp~~  230 (303)
                      +|+||+++ .+|||+|+|++   +++++|||+|+|+||||+|||.|+++++|..+.+|||+.
T Consensus         2 ~yrGVr~r-~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQR-PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEE-TTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeEC-CCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            59999975 67999999985   678999999999999999999999999999999999964

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.14  E-value=8.7e-12  Score=90.71  Aligned_cols=40  Identities=28%  Similarity=0.516  Sum_probs=35.2

Q ss_pred             cccceeeecCCeeeEEEcee-cCCeEEEecCCCCHHHHhcC
Q 022082          264 KYRGVTLHKCGRWEARMGQF-LGKKYIYLGLFDSEVEAARS  303 (303)
Q Consensus       264 kYRGVs~~k~GKW~ArIg~~-~ggK~~~LG~F~teeEAArA  303 (303)
                      +|+||++++.|||+|+|... ..+++++||+|+|+||||+|
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArA   42 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALA   42 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHH
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHH
Confidence            59999998899999999542 46688999999999999986

>d1u3em1 d.4.1.3 (M:1-105) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SP01 [TaxId: 10685]}

class: Alpha and beta proteins (a+b)
fold: His-Me finger endonucleases
superfamily: His-Me finger endonucleases
family: Intron-encoded homing endonucleases
domain: Intron-encoded homing endonuclease I-HmuI
species: Bacteriophage SP01 [TaxId: 10685]

Probab=96.53  E-value=9.5e-05  Score=57.24  Aligned_cols=34  Identities=12%  Similarity=0.029  Sum_probs=27.7

Q ss_pred             cccccccccccccCCccccccCCCcccccccCCccccC
Q 022082          124 IDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKK  161 (303)
Q Consensus       124 ~~~~iDhi~~~~~~n~~~Nlr~~~~~t~~~qN~~n~kk  161 (303)
                      ....|||||+++.||+++|||+   +| .++|..+..+
T Consensus        69 ~~~~VdHidgnk~nN~~~NL~w---~T-~~eN~~~~~~  102 (105)
T d1u3em1          69 EGLVVDHKDGNKDNNLSTNLRW---VT-QKINVENQMS  102 (105)
T ss_dssp             TTCEEEETTSCTTCCCGGGEEE---EC-HHHHHHHHHH
T ss_pred             CCCEEEeCCCCCCCCCHHHcEE---cC-HHHHHhhHHh
Confidence            4568999999999999999998   77 6676665443