Citrus Sinensis ID: 022090

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
Protein Sequence
MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQNLLLEQ
Secondary Structure (PSIPRED)
ccccccccEEEEEcccHHHHHHHHHHHHcccccEEEEccccccccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHcccccccEEccEEEEEEEEcccccEEEEEEcccccccEEEEEEEccEEEEcccccccccccccccccccccccccccEEEccccccccccccccEEEEEcccccHHHHHHHHHccccEEEEEEEcccEEEccccccHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccccHHHccccccEEEcHHHHHHHccccEEEEcccc
Secondary Structure Prediction (SSPRO)
cHHHHcccEEEEEcccHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHEEEEcccHHHcccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEcccccEEEEEEEEccccccEEEEEEEEEEEEEEcccccccccccccccccccccHHcccEEEEccccccccHccccEEEEEEccccHHHHHHHHHHccccEEEEEcccEEEccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHccccccccccccccccccccEEEccccHHHHccccEEEEEccc
Coil and Loop (DISEMBL)
MKEQAAGVEVIMVGAGTSGLATAACLslqsipyviLERENCYASIWKKYSYDRLRLHLAKQfcqlphlpfpssypmfvsRAQFIEHLDHYvshfnigpsiryqrsvesasydeatNMWNvkasnllspgreieeYYSGRFLVVasgettnpftpdirglcsfcssatgtgevihstqykngkpyggknvlvvgsgnsGMEIALDLANHAAktslvvrspvhvLSREMVYLGVVLFkyvpfgwvDTLMVMLSRLVygdlskygipkpregpffmkaaygkypvidagtcekiksgQIQNLLLEQ
Flexible Loop (DISEMBL)
MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHstqykngkpygGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSgqiqnllleq
Low Complexity Region (SEG)
MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQNLLLEQ
Disordered region (IsUnstruct)
******GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQI*******
Disordered Region (DISOPRED)
******G***IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQNLLL**
Disordered Region (DISEMBL)
MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQNLLLEQ
Disordered Region (DISPRO)
*****AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQNLLL**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQNLLLEQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	303	2.2.26 [Sep-21-2011]
Q9FVQ0	383	Flavin-containing monooxy	yes	no	0.914	0.723	0.503	5e-83
Q9SVU0	426	Flavin-containing monooxy	no	no	0.917	0.652	0.465	9e-76
O64489	421	Flavin-containing monooxy	no	no	0.907	0.653	0.496	4e-74
Q9LKC0	424	Flavin-containing monooxy	no	no	0.917	0.655	0.482	9e-74
Q9LPL3	391	Putative flavin-containin	no	no	0.933	0.723	0.467	1e-73
O23024	437	Flavin-containing monooxy	no	no	0.920	0.638	0.458	4e-72
Q8VZ59	417	Flavin-containing monooxy	no	no	0.910	0.661	0.465	5e-70
O49312	431	Putative flavin-containin	no	no	0.910	0.640	0.471	9e-68
Q9SVQ1	415	Flavin-containing monooxy	no	no	0.910	0.665	0.448	3e-67
Q9SZY8	414	Flavin-containing monooxy	no	no	0.897	0.657	0.431	3e-66

>sp|Q9FVQ0|YUC10_ARATH Flavin-containing monooxygenase YUCCA10 OS=Arabidopsis thaliana GN=YUC10 PE=2 SV=1

 Score =  308 bits (788), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 145/288 (50%), Positives = 209/288 (72%), Gaps = 11/288 (3%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP 69
           V++VGAG +GLAT+ CL+  SIP VILE+E+ YAS+WKK +YDRL+LHLAK+FCQLP +P
Sbjct: 5   VVIVGAGPAGLATSVCLNQHSIPNVILEKEDIYASLWKKRAYDRLKLHLAKEFCQLPFMP 64

Query: 70  FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPG 129
                P F+S+  F+ +LD YV+ F+I P  RY R+V+S+++DE+ N W V A N ++  
Sbjct: 65  HGREVPTFMSKELFVNYLDAYVARFDINP--RYNRTVKSSTFDESNNKWRVVAENTVTG- 121

Query: 130 REIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
            E E Y+S  FLVVA+GE  +   P + G+ +F       GE++HS++YK+G+ +  KNV
Sbjct: 122 -ETEVYWS-EFLVVATGENGDGNIPMVEGIDTFG------GEIMHSSEYKSGRDFKDKNV 173

Query: 190 LVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVM 249
           LVVG GNSGMEI+ DL N  A T++++R+P HV+++E+++LG+ L KY P   VDTL+  
Sbjct: 174 LVVGGGNSGMEISFDLCNFGANTTILIRTPRHVVTKEVIHLGMTLLKYAPVAMVDTLVTT 233

Query: 250 LSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           +++++YGDLSKYG+ +P++GPF  K   GK PVID GT EKI+ G+IQ
Sbjct: 234 MAKILYGDLSKYGLFRPKQGPFATKLFTGKAPVIDVGTVEKIRDGEIQ 281

Involved in auxin biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: -

>sp|Q9SVU0|YUC8_ARATH Flavin-containing monooxygenase YUCCA8 OS=Arabidopsis thaliana GN=YUC8 PE=2 SV=1

 Score =  283 bits (725), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 136/292 (46%), Positives = 198/292 (67%), Gaps = 14/292 (4%)

Query: 11  IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
           ++VGAG SGLATAACL  Q++P+V+LER +C AS+W+K +YDRL+LHL KQFCQLP +PF
Sbjct: 26  VIVGAGPSGLATAACLHEQNVPFVVLERADCIASLWQKRTYDRLKLHLPKQFCQLPKMPF 85

Query: 71  PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
           P  +P + ++ QFI++L+ Y + F I P  ++   V++A +DE + +W VK  +  S   
Sbjct: 86  PEDFPEYPTKRQFIDYLESYATRFEINP--KFNECVQTARFDETSGLWRVKTVS-KSEST 142

Query: 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
           + E  Y  R+LVVA+GE      P+I GL  F      +GEVIH+  YK+G+ + GK VL
Sbjct: 143 QTEVEYICRWLVVATGENAERVMPEIDGLSEF------SGEVIHACDYKSGEKFAGKKVL 196

Query: 191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGWVDT 245
           VVG GNSGME++LDLANH AK S+VVRS +HV+ RE++      L + + ++ P   VD 
Sbjct: 197 VVGCGNSGMEVSLDLANHFAKPSMVVRSSLHVMPREVMGKSTFELAMKMLRWFPLWLVDK 256

Query: 246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           ++++LS +V G++ KYG+ +P  GP  +K+  GK PV+D G  EKI+ G+I 
Sbjct: 257 ILLVLSWMVLGNIEKYGLKRPEMGPMELKSVKGKTPVLDIGAIEKIRLGKIN 308

Involved in auxin biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|O64489|YUC9_ARATH Flavin-containing monooxygenase YUCCA9 OS=Arabidopsis thaliana GN=YUC9 PE=2 SV=1

 Score =  278 bits (711), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 145/292 (49%), Positives = 203/292 (69%), Gaps = 17/292 (5%)

Query: 11  IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
           ++VGAG SGLATAACL  Q +P+V++ER +C AS+W+K +YDRL+LHL K+FCQLP +PF
Sbjct: 26  VIVGAGPSGLATAACLHDQGVPFVVVERSDCIASLWQKRTYDRLKLHLPKKFCQLPKMPF 85

Query: 71  PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
           P  YP + ++ QFI++L+ Y + F+I P   + +SVESA +DE + +W V+ +   S G 
Sbjct: 86  PDHYPEYPTKRQFIDYLESYANRFDIKPE--FNKSVESARFDETSGLWRVRTT---SDGE 140

Query: 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
           E+E  Y  R+LVVA+GE      P+I GL +        GEVIH+ +YK+G+ + GK VL
Sbjct: 141 EME--YICRWLVVATGENAERVVPEINGLMT-----EFDGEVIHACEYKSGEKFRGKRVL 193

Query: 191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGWVDT 245
           VVG GNSGME++LDLANH A TS+VVRS VHVL RE++      + V++ K++P   VD 
Sbjct: 194 VVGCGNSGMEVSLDLANHNAITSMVVRSSVHVLPREIMGKSTFGISVMMMKWLPLWLVDK 253

Query: 246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           L+++LS LV G LS YG+ +P  GP  +K+  GK PV+D G  EKIKSG ++
Sbjct: 254 LLLILSWLVLGSLSNYGLKRPDIGPMELKSMTGKTPVLDIGALEKIKSGDVE 305

Involved in auxin biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q9LKC0|YUC5_ARATH Flavin-containing monooxygenase YUCCA5 OS=Arabidopsis thaliana GN=YUC5 PE=2 SV=1

 Score =  276 bits (707), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 141/292 (48%), Positives = 202/292 (69%), Gaps = 14/292 (4%)

Query: 11  IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
           ++VGAG SGLATAACL  + +P+V+LER +C AS+W+K +YDR++LHL K+ CQLP +PF
Sbjct: 26  VIVGAGPSGLATAACLREEGVPFVVLERADCIASLWQKRTYDRIKLHLPKKVCQLPKMPF 85

Query: 71  PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
           P  YP + ++ QFIE+L+ Y + F I P  ++   V+SA YDE + +W +K ++  S G 
Sbjct: 86  PEDYPEYPTKRQFIEYLESYANKFEITP--QFNECVQSARYDETSGLWRIKTTSSSSSGS 143

Query: 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
           E+E  Y  R+LVVA+GE      P+I GL     +    GEVIHS +YK+G+ Y GK+VL
Sbjct: 144 EME--YICRWLVVATGENAEKVVPEIDGL-----TTEFEGEVIHSCEYKSGEKYRGKSVL 196

Query: 191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGWVDT 245
           VVG GNSGME++LDLANH A  S+VVRS VHVL RE++      + ++L K+ P   VD 
Sbjct: 197 VVGCGNSGMEVSLDLANHNANASMVVRSSVHVLPREILGKSSFEISMMLMKWFPLWLVDK 256

Query: 246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           ++++L+ L+ G+L+KYG+ +P  GP  +K   GK PV+D G  EKIKSG+++
Sbjct: 257 ILLILAWLILGNLTKYGLKRPTMGPMELKIVSGKTPVLDIGAMEKIKSGEVE 308

Involved in auxin biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q9LPL3|YUC11_ARATH Putative flavin-containing monooxygenase YUCCA11 OS=Arabidopsis thaliana GN=YUC11 PE=3 SV=1

 Score =  276 bits (707), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 138/295 (46%), Positives = 197/295 (66%), Gaps = 12/295 (4%)

Query: 3   EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQF 62
           E+   + V+++GAG +GLAT+ACL+  +IP +++ER+ C AS+WK+ SYDRL+LHLAKQF
Sbjct: 2   EKEIKILVLIIGAGPAGLATSACLNRLNIPNIVVERDVCSASLWKRRSYDRLKLHLAKQF 61

Query: 63  CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA 122
           CQLPH+PFPS+ P FVS+  FI +LD Y + FN+ P  RY R+V+SA + +    W VK 
Sbjct: 62  CQLPHMPFPSNTPTFVSKLGFINYLDEYATRFNVNP--RYNRNVKSAYFKDG--QWIVKV 117

Query: 123 SNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGK 182
            N  +    + E YS +F+V A+GE      P+I GL       +  G+ +HS++YKNG+
Sbjct: 118 VNKTTA---LIEVYSAKFMVAATGENGEGVIPEIPGLVE-----SFQGKYLHSSEYKNGE 169

Query: 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGW 242
            + GK+VLVVG GNSGMEIA DL+   A  S+VVRS VHVL+R +V +G+ L ++ P   
Sbjct: 170 KFAGKDVLVVGCGNSGMEIAYDLSKCNANVSIVVRSQVHVLTRCIVRIGMSLLRFFPVKL 229

Query: 243 VDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           VD L ++L+ L + + S+YG+ +P  GPF  K   G+   ID G   +IKSG+IQ
Sbjct: 230 VDRLCLLLAELRFRNTSRYGLVRPNNGPFLNKLITGRSATIDVGCVGEIKSGKIQ 284

Involved in auxin biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|O23024|YUC3_ARATH Flavin-containing monooxygenase YUCCA3 OS=Arabidopsis thaliana GN=YUC3 PE=2 SV=1

 Score =  271 bits (694), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 134/292 (45%), Positives = 189/292 (64%), Gaps = 13/292 (4%)

Query: 11  IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
           ++VGAG SGLA AA L  + +P++ILER NC AS+W+  +YDRL+LHL KQFCQLP+ PF
Sbjct: 38  VIVGAGPSGLAVAAGLKREGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNYPF 97

Query: 71  PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
           P  +P + ++ QFI++L+ Y ++F+I P  ++  +V+SA YDE   +W VK  + +    
Sbjct: 98  PDEFPEYPTKFQFIQYLESYAANFDINP--KFNETVQSAKYDETFGLWRVKTISNMGQLG 155

Query: 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
             E  Y  R++VVA+GE      PD  GL  F       G+V+H+  YK+G  Y GK VL
Sbjct: 156 SCEFEYICRWIVVATGENAEKVVPDFEGLEDF------GGDVLHAGDYKSGGRYQGKKVL 209

Query: 191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM-----VYLGVVLFKYVPFGWVDT 245
           VVG GNSGME++LDL NH A  S+VVRS VHVL RE+       LGV + KY+P    D 
Sbjct: 210 VVGCGNSGMEVSLDLYNHGANPSMVVRSAVHVLPREIFGKSTFELGVTMMKYMPVWLADK 269

Query: 246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
            ++ L+R++ G+  KYG+ +P+ GP  +K   GK PV+D G   KI+SG+I+
Sbjct: 270 TILFLARIILGNTDKYGLKRPKIGPLELKNKEGKTPVLDIGALPKIRSGKIK 321

Involved in auxin biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q8VZ59|YUC6_ARATH Flavin-containing monooxygenase YUCCA6 OS=Arabidopsis thaliana GN=YUC6 PE=2 SV=1

 Score =  265 bits (676), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 136/292 (46%), Positives = 182/292 (62%), Gaps = 16/292 (5%)

Query: 11  IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
           ++VGAG SGLATAACL  + I  V+LER NC AS+W+  +YDRL LHL KQFC+LP +PF
Sbjct: 33  VIVGAGPSGLATAACLKERGITSVLLERSNCIASLWQLKTYDRLHLHLPKQFCELPIIPF 92

Query: 71  PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
           P  +P + ++ QFIE+L+ Y   F+I P   + ++VESA++DE   MW V      S G 
Sbjct: 93  PGDFPTYPTKQQFIEYLEDYARRFDIKPE--FNQTVESAAFDENLGMWRVT-----SVGE 145

Query: 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
           E    Y  R+LV A+GE   P  P   G+  F ++    G V H+  YK G  + GK VL
Sbjct: 146 EGTTEYVCRWLVAATGENAEPVVPRFEGMDKFAAA----GVVKHTCHYKTGGDFAGKRVL 201

Query: 191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGWVDT 245
           VVG GNSGME+ LDL N  A+ SLVVR  VHVL REM+      L + L K++P   VD 
Sbjct: 202 VVGCGNSGMEVCLDLCNFGAQPSLVVRDAVHVLPREMLGTSTFGLSMFLLKWLPIRLVDR 261

Query: 246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
            ++++SR + GD +  G+ +PR GP  +K   GK PV+D GT  KIK+G I+
Sbjct: 262 FLLVVSRFILGDTTLLGLNRPRLGPLELKNISGKTPVLDVGTLAKIKTGDIK 313

Involved in auxin biosynthesis. Required for the formation of floral organs and vascular tissues.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|O49312|YUC7_ARATH Putative flavin-containing monooxygenase YUCCA7 OS=Arabidopsis thaliana GN=YUC7 PE=3 SV=1

 Score =  257 bits (656), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 139/295 (47%), Positives = 191/295 (64%), Gaps = 19/295 (6%)

Query: 11  IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
           ++VGAG SGLA AA L  Q +P+VILER NC AS+W+  +YDRL+LHL KQFCQLP+LPF
Sbjct: 33  VIVGAGPSGLAVAADLKRQEVPFVILERANCIASLWQNRTYDRLKLHLPKQFCQLPNLPF 92

Query: 71  PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA---SNLLS 127
           P   P + ++ QFIE+L+ Y +HF++ P  ++  +V+SA YD+   +W V+    S LL 
Sbjct: 93  PEDIPEYPTKYQFIEYLESYATHFDLRP--KFNETVQSAKYDKRFGLWRVQTVLRSELLG 150

Query: 128 PGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGK 187
                E  Y  R+LVVA+GE      P+  GL  F       G+V+H+  YK+G+ Y GK
Sbjct: 151 ---YCEFEYICRWLVVATGENAEKVVPEFEGLEDF------GGDVLHAGDYKSGERYRGK 201

Query: 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGW 242
            VLVVG GNSGME++LDL NH A  S+VVRS VHVL RE++      L V + K++P   
Sbjct: 202 RVLVVGCGNSGMEVSLDLCNHDASPSMVVRSSVHVLPREVLGKSTFELSVTMMKWMPVWL 261

Query: 243 VDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
           VD  +++L+RL+ G+  KYG+ +P  GP  +K   GK PV+D G    IKSG+I+
Sbjct: 262 VDKTLLVLTRLLLGNTDKYGLKRPEIGPLELKNTAGKTPVLDIGAISMIKSGKIK 316

Involved in auxin biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q9SVQ1|YUC2_ARATH Flavin-containing monooxygenase YUCCA2 OS=Arabidopsis thaliana GN=YUC2 PE=2 SV=1

 Score =  255 bits (651), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 131/292 (44%), Positives = 183/292 (62%), Gaps = 16/292 (5%)

Query: 11  IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
           I+VG+G SGLATAACL  + IP +ILER  C AS+W+  +YDRLRLHL K FC+LP +PF
Sbjct: 29  IIVGSGPSGLATAACLKSRDIPSLILERSTCIASLWQHKTYDRLRLHLPKDFCELPLMPF 88

Query: 71  PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
           PSSYP + ++ QF+++L+ Y  HF++ P   + ++VE A +D    +W V+ +       
Sbjct: 89  PSSYPTYPTKQQFVQYLESYAEHFDLKPV--FNQTVEEAKFDRRCGLWRVRTTG--GKKD 144

Query: 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
           E  EY S R+LVVA+GE      P+I G+  F       G ++H++ YK+G+ +  K +L
Sbjct: 145 ETMEYVS-RWLVVATGENAEEVMPEIDGIPDF------GGPILHTSSYKSGEIFSEKKIL 197

Query: 191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV-----LFKYVPFGWVDT 245
           VVG GNSGME+ LDL N  A  SLVVR  VHVL +EM+ +        L K+ P   VD 
Sbjct: 198 VVGCGNSGMEVCLDLCNFNALPSLVVRDSVHVLPQEMLGISTFGISTSLLKWFPVHVVDR 257

Query: 246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
            ++ +SRLV GD  + G+ +P+ GP   K   GK PV+D GT  KI+SG I+
Sbjct: 258 FLLRMSRLVLGDTDRLGLVRPKLGPLERKIKCGKTPVLDVGTLAKIRSGHIK 309

Involved in auxin biosynthesis. Required for the formation of floral organs and vascular tissues.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q9SZY8|YUC1_ARATH Flavin-containing monooxygenase YUCCA1 OS=Arabidopsis thaliana GN=YUC1 PE=2 SV=1

 Score =  252 bits (643), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 126/292 (43%), Positives = 189/292 (64%), Gaps = 20/292 (6%)

Query: 11  IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
           I++GAG SGLAT+ACLS + +P +ILER +  AS+WK  +YDRLRLHL K FC+LP L F
Sbjct: 22  IIIGAGPSGLATSACLSSRGVPSLILERSDSIASLWKSKTYDRLRLHLPKHFCRLPLLDF 81

Query: 71  PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
           P  YP + S+ +F+ +L+ Y SHF I P  R+ ++V++A+YD ++  W VK         
Sbjct: 82  PEYYPKYPSKNEFLAYLESYASHFRIAP--RFNKNVQNAAYDSSSGFWRVKT-------H 132

Query: 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
           +  EY S ++L+VA+GE  +P+ P+I G   F       G+++H+++YK+G+ +  + VL
Sbjct: 133 DNTEYLS-KWLIVATGENADPYFPEIPGRKKFSG-----GKIVHASEYKSGEEFRRQKVL 186

Query: 191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGWVDT 245
           VVG GNSGMEI+LDL  H A   LVVR+ VHVL RE++      +G+ L K +P   VD 
Sbjct: 187 VVGCGNSGMEISLDLVRHNASPHLVVRNTVHVLPREILGVSTFGVGMTLLKCLPLRLVDK 246

Query: 246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
            +++++ L +G+  + G+ +P+ GP  +K   GK PV+D G    I+SG IQ
Sbjct: 247 FLLLMANLSFGNTDRLGLRRPKTGPLELKNVTGKSPVLDVGAMSLIRSGMIQ 298

Catalyze N-oxidation of tryptamine to form N-hydroxyl tryptamine in auxin biosynthesis. Involved during embryogenesis and seedling development. Required for the formation of floral organs and vascular tissues.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
224129714	377	flavine-containing monoxygenase [Populus	0.917	0.737	0.681	1e-110
381216459	381	YUC7 [Fragaria vesca]	0.937	0.745	0.642	1e-104
290467591	374	YUCCA-like protein [Coffea arabica]	0.943	0.764	0.648	1e-102
255559338	377	monooxygenase, putative [Ricinus communi	0.937	0.753	0.635	1e-98
225436805	377	PREDICTED: flavin-containing monooxygena	0.920	0.740	0.627	7e-98
356503887	1043	PREDICTED: auxin response factor 7-like,	0.920	0.267	0.6	9e-97
225436807	393	PREDICTED: flavin-containing monooxygena	0.927	0.715	0.620	3e-96
388513013	384	unknown [Medicago truncatula]	0.930	0.734	0.615	1e-94
388519329	388	unknown [Lotus japonicus]	0.930	0.726	0.597	2e-94
359806440	390	uncharacterized protein LOC100777958 [Gl	0.937	0.728	0.586	1e-93

>gi|224129714|ref|XP_002320653.1| flavine-containing monoxygenase [Populus trichocarpa] gi|222861426|gb|EEE98968.1| flavine-containing monoxygenase [Populus trichocarpa]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/289 (68%), Positives = 233/289 (80%), Gaps = 11/289 (3%)

Query: 11  IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
           I+VGAG SGLAT+ACL+  SIP+++LERE+CYAS+WKKYSYDRLRLHL KQFC+LP + F
Sbjct: 7   IIVGAGPSGLATSACLNQHSIPHILLEREDCYASLWKKYSYDRLRLHLRKQFCELPRMSF 66

Query: 71  PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
           P SYP +V + QF+++LD YVSHF I P   YQRSVE AS+DE    WNVKA N+ S   
Sbjct: 67  PDSYPTYVPKDQFLQYLDDYVSHFKISP--MYQRSVEFASFDEEAKKWNVKARNVSS--G 122

Query: 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
           EIEEY S RFLVVASGET+NPF P+  GL +F      TGEV+HST++KNGK Y  KNVL
Sbjct: 123 EIEEY-SARFLVVASGETSNPFIPEFEGLNTF------TGEVLHSTEFKNGKTYCDKNVL 175

Query: 191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVML 250
           VVGSGNSGMEIALDLANH A+TS+ +RSP+H+LSREMVYLG+ + KY   G VD +MVML
Sbjct: 176 VVGSGNSGMEIALDLANHGARTSIAIRSPIHILSREMVYLGLNMLKYFSCGMVDKVMVML 235

Query: 251 SRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQNL 299
           S+LVYGDLSK+GI +P+EGPFFMK AYGKYPV D GTC KIKSG+IQ L
Sbjct: 236 SKLVYGDLSKHGIKRPKEGPFFMKVAYGKYPVFDVGTCNKIKSGEIQVL 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|381216459|gb|AFG16920.1| YUC7 [Fragaria vesca]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/294 (64%), Positives = 229/294 (77%), Gaps = 10/294 (3%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP 69
           VI+VGAG SGLA A CLS   IPY++LERE+C+AS+WKKYSYDRL LHL KQFC+LPH+ 
Sbjct: 6   VIIVGAGPSGLAVAGCLSRLEIPYLLLEREDCFASLWKKYSYDRLHLHLQKQFCELPHMS 65

Query: 70  FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA-SNLLSP 128
           FPSS P +V + QFI++LD YV+HF I P   YQR+VESA+YDE +  W VKA +N    
Sbjct: 66  FPSSCPTYVPKKQFIQYLDDYVAHFKISP--MYQRNVESATYDEGSERWVVKAMNNDEGC 123

Query: 129 GREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKN 188
           G E+E +  GRFLVVA+GE TNP+ P+I GL SF       GEV+HST++K+G  +  KN
Sbjct: 124 GGEVEVFL-GRFLVVATGEATNPYVPEIEGLSSF------DGEVLHSTRFKSGVEFKNKN 176

Query: 189 VLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMV 248
           VLVVGSGNSGMEIALDLANH A+TS++VRSPVH LS+ MVYL +VL +Y+    VDTLMV
Sbjct: 177 VLVVGSGNSGMEIALDLANHGARTSIIVRSPVHFLSKRMVYLALVLLRYLSLSKVDTLMV 236

Query: 249 MLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQNLLLE 302
           +LS+LVYGDL+KYGI +P+EGPFFMK  YGKYP ID GTC KIKSG+IQ L  E
Sbjct: 237 LLSKLVYGDLAKYGIARPKEGPFFMKIKYGKYPAIDVGTCSKIKSGEIQVLPTE 290

Source: Fragaria vesca

Species: Fragaria vesca

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|290467591|gb|ADD25898.1| YUCCA-like protein [Coffea arabica]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/299 (64%), Positives = 227/299 (75%), Gaps = 13/299 (4%)

Query: 2   KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQ 61
           KEQ     VI+VGAG SGLATAACL+  SIP ++LERE+C+AS+WKKYSYDRL LHLAKQ
Sbjct: 4   KEQV----VIVVGAGPSGLATAACLNNLSIPNIVLEREDCFASLWKKYSYDRLHLHLAKQ 59

Query: 62  FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVK 121
           FCQLP  PFP++YP +V R QF+ +LD YVSHFNI P   YQRSVESA YDEA   W VK
Sbjct: 60  FCQLPLKPFPTTYPTYVPRDQFLRYLDDYVSHFNICP--LYQRSVESARYDEAAEAWIVK 117

Query: 122 ASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNG 181
           A NL S   E  E YS + LVVA+GET++ F P + GL ++       GEVIHST+YKNG
Sbjct: 118 ARNLGSSDSEEMEEYSSKCLVVATGETSDAFIPQLEGLNTYL------GEVIHSTRYKNG 171

Query: 182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFG 241
           K Y  KNVLVVGSGNSGMEIA DL+N+ AKTS+ VRSP+H+LSR MVY+G VL KY    
Sbjct: 172 KSYENKNVLVVGSGNSGMEIAFDLSNYGAKTSIAVRSPLHILSRGMVYIGPVLLKYFSLN 231

Query: 242 WVDTLMVMLSRLVY-GDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQNL 299
            VD L++MLS+L Y GDLS+YGI +P EGPF MK  YGKYPVID GTC+KIKSG+IQ L
Sbjct: 232 TVDWLVLMLSKLWYGGDLSRYGIKRPEEGPFTMKVKYGKYPVIDVGTCQKIKSGEIQVL 290

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559338|ref|XP_002520689.1| monooxygenase, putative [Ricinus communis] gi|223540074|gb|EEF41651.1| monooxygenase, putative [Ricinus communis]

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 190/299 (63%), Positives = 234/299 (78%), Gaps = 15/299 (5%)

Query: 1   MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK 60
           M+EQ A    I+VGAG SGLAT+ACL+L SIP++ILERE+C AS+WKKYSYDRL LHL K
Sbjct: 1   MQEQIA----IIVGAGPSGLATSACLNLYSIPHIILEREDCCASLWKKYSYDRLHLHLKK 56

Query: 61  QFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV 120
           QF +LPH+ FPSS P ++S+ QFI++LD YVSHF I P   YQR VE A+YD+ T  W +
Sbjct: 57  QFSELPHMSFPSSCPTYISKDQFIQYLDGYVSHFKISP--LYQRCVELATYDQGTKKWIL 114

Query: 121 KASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKN 180
           K  N+ S   ++E+Y S RFL+VASGET +PF PD+ GL SF      +G+ +HSTQ+KN
Sbjct: 115 KVRNVNSG--DVEDY-SARFLIVASGETCDPFIPDVEGLNSF------SGDALHSTQFKN 165

Query: 181 GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPF 240
           GK Y  KNVLVVGSGNSGMEIALDL NH AKTS+VVRSPVH+LSREMVYL + + KY P 
Sbjct: 166 GKAYRNKNVLVVGSGNSGMEIALDLVNHGAKTSIVVRSPVHILSREMVYLALAMLKYFPL 225

Query: 241 GWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQNL 299
           G VD+L+V+LS++V+GDL+KYG+ +  EGPFFMK AYGKYP+ID GT  KIKSG+IQ L
Sbjct: 226 GLVDSLLVLLSKVVFGDLTKYGMSRATEGPFFMKVAYGKYPIIDVGTFNKIKSGEIQVL 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436805|ref|XP_002269763.1| PREDICTED: flavin-containing monooxygenase YUCCA10 [Vitis vinifera]

 Score =  363 bits (931), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 182/290 (62%), Positives = 220/290 (75%), Gaps = 11/290 (3%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP 69
           VI+VGAG SGLA A CL   SIPY+ILERE+C AS+WKK +YDRL LHL KQ+C LPH+ 
Sbjct: 6   VIIVGAGPSGLAMAGCLCQLSIPYLILEREDCCASLWKKKAYDRLHLHLPKQYCTLPHME 65

Query: 70  FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPG 129
            P+ +P + SR QF+++LD Y  HFNI P   Y+RSVES S+DE+   WNV   N     
Sbjct: 66  MPADWPKYPSRQQFVQYLDDYADHFNIRP--MYRRSVESGSFDESRGKWNVGVRN--GES 121

Query: 130 REIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
            E+EEY SG FLVVASGET++ F PDI GL +F       G+VIHSTQYKNGK +    V
Sbjct: 122 GELEEY-SGLFLVVASGETSDAFVPDIDGLSTF------IGKVIHSTQYKNGKEFADMKV 174

Query: 190 LVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVM 249
           LVVGSGNSGMEIALDL+N  AKTS+VVRSP+H+LSREMV LG+ L KY+P+  VD+LMV+
Sbjct: 175 LVVGSGNSGMEIALDLSNCGAKTSIVVRSPLHMLSREMVNLGLALLKYIPYNMVDSLMVI 234

Query: 250 LSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQNL 299
           LS+LVYGDL+KYGI +P EGPFF+K  YGKYPV++ GT  KIKSG+IQ L
Sbjct: 235 LSKLVYGDLNKYGITRPEEGPFFLKVKYGKYPVVNTGTFGKIKSGEIQVL 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503887|ref|XP_003520732.1| PREDICTED: auxin response factor 7-like, partial [Glycine max]

 Score =  359 bits (921), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 174/290 (60%), Positives = 225/290 (77%), Gaps = 11/290 (3%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP 69
           VI+VGAG SG++ AAC + QSIPY+ILERE+C AS+WKKYSY+RL LHL KQ+CQLPH P
Sbjct: 30  VIIVGAGPSGISAAACFTKQSIPYIILEREDCSASLWKKYSYERLHLHLRKQYCQLPHKP 89

Query: 70  FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPG 129
           FP+S+P +V + QF+++LD YVSHF I P   Y+R+VE A YD+  + W V A N     
Sbjct: 90  FPASFPPYVPKKQFLQYLDDYVSHFGITP--LYRRTVELAEYDQGCHNWRVMALN--GDS 145

Query: 130 REIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
            ++EEY  GRFLVVA+GETT+PF P+++GL  F       G++IHST +++GK +  ++V
Sbjct: 146 GQLEEY-RGRFLVVATGETTDPFVPELQGLSGF------PGKLIHSTGFRSGKDFKDQHV 198

Query: 190 LVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVM 249
           LVVGSGNSGMEIALDL NH AKTS++VRSPVH LSREMV LG+ L KY+    VD+LMVM
Sbjct: 199 LVVGSGNSGMEIALDLVNHGAKTSILVRSPVHFLSREMVSLGLFLLKYLSLSTVDSLMVM 258

Query: 250 LSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQNL 299
           LS ++YGD++KYG+ +P EGPF+MK  YGKYPVID GT +KIKSG+++ L
Sbjct: 259 LSTMIYGDVTKYGVARPNEGPFYMKVKYGKYPVIDVGTYKKIKSGELKVL 308

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436807|ref|XP_002269844.1| PREDICTED: flavin-containing monooxygenase YUCCA10-like [Vitis vinifera]

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 180/290 (62%), Positives = 222/290 (76%), Gaps = 9/290 (3%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP 69
           VI+VGAG SGLATAA L+L SIP ++LERE+C+A +W+K SYDRL LHL KQ C+L H+P
Sbjct: 21  VIVVGAGPSGLATAASLNLLSIPNIVLEREDCFAPLWQKKSYDRLHLHLPKQACELAHMP 80

Query: 70  FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPG 129
            P+SYP + SR QFI++L  YVSHF I P   Y R VESAS+DE T  W VK   +    
Sbjct: 81  MPTSYPTYPSRLQFIQYLRDYVSHFGISPV--YHRLVESASFDEVTEKWKVKVRVINGGS 138

Query: 130 REIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
            EIEEY S RFLVVASGET++ F P++ GL SF       GEV+HSTQYK GK Y  K V
Sbjct: 139 DEIEEY-SCRFLVVASGETSDAFIPEVEGLSSF------KGEVLHSTQYKCGKEYAEKTV 191

Query: 190 LVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVM 249
           LVVGSGNSGMEIALDL+N+ AKTS+VVRSPVH+LS+E+++LG+ L +Y+PF  V+ L VM
Sbjct: 192 LVVGSGNSGMEIALDLSNYGAKTSIVVRSPVHILSKEIMHLGLFLARYLPFNMVEYLTVM 251

Query: 250 LSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQNL 299
           LS+++YGDL+KYGI +  EGPF +KA YGKYP+ID GT +KIKSG+IQ L
Sbjct: 252 LSKIMYGDLTKYGIIRHEEGPFTVKAKYGKYPIIDLGTYKKIKSGEIQVL 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513013|gb|AFK44568.1| unknown [Medicago truncatula]

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 181/294 (61%), Positives = 221/294 (75%), Gaps = 12/294 (4%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP 69
           V ++GAGTSGLATAACL+ QSIP++ILERENC+AS+W+ Y+YDR+ LHL KQ C+LPH P
Sbjct: 6   VTIIGAGTSGLATAACLTKQSIPFIILERENCFASLWQNYTYDRVHLHLRKQLCELPHFP 65

Query: 70  FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASY-DEATNMWNVKASNLLSP 128
           FP SYP +V + QFIE+L +YV++FNI P   Y R+VE A Y D+    W VKA N  S 
Sbjct: 66  FPPSYPHYVPKKQFIEYLGNYVNNFNINPI--YNRAVELAEYVDDDEKKWRVKAENKSS- 122

Query: 129 GREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKN 188
             E+EEY S RFLVVASGET  P  P + GL +F       G+VIHST+YKNGK +  ++
Sbjct: 123 -GEVEEY-SARFLVVASGETAEPRVPVVEGLENF------KGKVIHSTRYKNGKEFKDEH 174

Query: 189 VLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMV 248
           VLVVGSGNSGMEIALDLAN  AK S++VRSPVH+LSR+M+Y G VL  Y+    V+ L+V
Sbjct: 175 VLVVGSGNSGMEIALDLANFGAKPSIIVRSPVHILSRDMMYYGGVLLNYLSPSTVEKLVV 234

Query: 249 MLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQNLLLE 302
           + SR+VYGDLSKYGIP P EGPF MK  YGK+PVID GT +KIKSG+IQ L  E
Sbjct: 235 IASRIVYGDLSKYGIPFPSEGPFTMKMKYGKFPVIDVGTVKKIKSGEIQVLPAE 288

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519329|gb|AFK47726.1| unknown [Lotus japonicus]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 175/293 (59%), Positives = 217/293 (74%), Gaps = 11/293 (3%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP 69
           VI+VG GTSG+ATA+CL+ +SI Y++LERE+C+AS+W+KY+YDRL LHL KQ C+LPH P
Sbjct: 6   VIIVGGGTSGIATASCLTKKSISYIMLEREDCFASLWQKYTYDRLHLHLRKQSCELPHFP 65

Query: 70  FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPG 129
           FP SYP +V + QFIE+LD+YV HFNI P   Y R+VE A +D +   W VKA N  S  
Sbjct: 66  FPPSYPHYVPKKQFIEYLDNYVKHFNINP--LYHRAVELAEHDNSHQNWRVKAKNRTS-- 121

Query: 130 REIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
             +EEY +G+FLVVA+GET  P  P++ GL  F       G+VIHST YKNGK +  +NV
Sbjct: 122 GHVEEY-AGKFLVVATGETAEPRIPEVEGLEGF------KGKVIHSTGYKNGKEFKNQNV 174

Query: 190 LVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVM 249
           LVVGSGNSGMEI+LDLAN  AK S++VRSPVH L+R+M+Y    L +Y+    V+ L+VM
Sbjct: 175 LVVGSGNSGMEISLDLANLGAKPSIIVRSPVHFLTRDMMYYAGELLRYLSLSTVENLVVM 234

Query: 250 LSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQNLLLE 302
            SR+VYGDLSKYGIP P EGPF MK  YGK+PVID GT  KIKSG+IQ L  E
Sbjct: 235 ASRIVYGDLSKYGIPVPTEGPFTMKMKYGKFPVIDVGTVNKIKSGEIQVLPAE 287

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806440|ref|NP_001241501.1| uncharacterized protein LOC100777958 [Glycine max] gi|255640068|gb|ACU20325.1| unknown [Glycine max]

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 173/295 (58%), Positives = 220/295 (74%), Gaps = 11/295 (3%)

Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
            +VI++GAGTSG+ATA CL+ QSIPY++LERE+C+AS+W+KY+YDRL LHL KQ C+LPH
Sbjct: 5   TKVIIIGAGTSGIATAGCLTKQSIPYIMLEREDCFASLWQKYTYDRLHLHLRKQVCELPH 64

Query: 68  LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS 127
           LPFP SYP +V R QFI++L +YV+HF I P   YQR+VE   YD    +W VKA N  S
Sbjct: 65  LPFPKSYPHYVPRKQFIDYLGNYVNHFEIKP--LYQRAVELVEYDGWKGIWRVKAQNRRS 122

Query: 128 PGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGK 187
              E+EEY +G++LVVASGET  P  P I+GL SF       G+VIHST YKNG  +  K
Sbjct: 123 G--ELEEY-AGKYLVVASGETAEPRLPQIQGLESF------NGKVIHSTAYKNGNEFKNK 173

Query: 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLM 247
           +VLVVGSGNSGMEIALDL+N  AK S++VRSPVH LSR+M+Y   ++  Y+    V+ ++
Sbjct: 174 HVLVVGSGNSGMEIALDLSNFGAKPSIIVRSPVHFLSRDMMYYASLMLNYLSLSTVEKVL 233

Query: 248 VMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQNLLLE 302
           VM+S++VYGDLS+YGIP P EGPF MK  Y K+P+ID GT +KIKS +IQ L  E
Sbjct: 234 VMVSKVVYGDLSEYGIPYPSEGPFTMKMKYAKFPIIDVGTVKKIKSREIQVLPAE 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
TAIR|locus:2028558	383	YUC10 "AT1G48910" [Arabidopsis	0.914	0.723	0.510	1e-75
TAIR|locus:2149524	424	YUC5 "AT5G43890" [Arabidopsis	0.917	0.655	0.482	2.3e-71
TAIR|locus:2020250	421	YUC9 "AT1G04180" [Arabidopsis	0.907	0.653	0.496	4.8e-71
TAIR|locus:2117783	426	YUC8 "AT4G28720" [Arabidopsis	0.914	0.650	0.467	8e-69
TAIR|locus:2026967	391	YUC11 "AT1G21430" [Arabidopsis	0.930	0.721	0.472	6.5e-67
TAIR|locus:2197863	437	YUC3 "YUCCA 3" [Arabidopsis th	0.917	0.636	0.470	8.2e-67
TAIR|locus:2046545	431	YUC7 "AT2G33230" [Arabidopsis	0.910	0.640	0.477	1.5e-65
TAIR|locus:2119340	415	YUC2 "YUCCA2" [Arabidopsis tha	0.910	0.665	0.455	3.8e-62
TAIR|locus:2131322	414	YUC1 "YUCCA 1" [Arabidopsis th	0.897	0.657	0.434	2.1e-61
TAIR|locus:2147962	411	YUC4 "AT5G11320" [Arabidopsis	0.897	0.661	0.362	8.1e-44

TAIR|locus:2028558 YUC10 "AT1G48910" [Arabidopsis thaliana (taxid:3702)]

 Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
 Identities = 147/288 (51%), Positives = 211/288 (73%)

Query:    10 VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP 69
             V++VGAG +GLAT+ CL+  SIP VILE+E+ YAS+WKK +YDRL+LHLAK+FCQLP +P
Sbjct:     5 VVIVGAGPAGLATSVCLNQHSIPNVILEKEDIYASLWKKRAYDRLKLHLAKEFCQLPFMP 64

Query:    70 FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPG 129
                  P F+S+  F+ +LD YV+ F+I P  RY R+V+S+++DE+ N W V A N ++ G
Sbjct:    65 HGREVPTFMSKELFVNYLDAYVARFDINP--RYNRTVKSSTFDESNNKWRVVAENTVT-G 121

Query:   130 REIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
              E E Y+S  FLVVA+GE  +   P + G+ +F     G GE++HS++YK+G+ +  KNV
Sbjct:   122 -ETEVYWS-EFLVVATGENGDGNIPMVEGIDTF-----G-GEIMHSSEYKSGRDFKDKNV 173

Query:   190 LVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVM 249
             LVVG GNSGMEI+ DL N  A T++++R+P HV+++E+++LG+ L KY P   VDTL+  
Sbjct:   174 LVVGGGNSGMEISFDLCNFGANTTILIRTPRHVVTKEVIHLGMTLLKYAPVAMVDTLVTT 233

Query:   250 LSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
             +++++YGDLSKYG+ +P++GPF  K   GK PVID GT EKI+ G+IQ
Sbjct:   234 MAKILYGDLSKYGLFRPKQGPFATKLFTGKAPVIDVGTVEKIRDGEIQ 281

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0022603 "regulation of anatomical structure morphogenesis" evidence=IGI

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2149524 YUC5 "AT5G43890" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 141/292 (48%), Positives = 202/292 (69%)

Query:    11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
             ++VGAG SGLATAACL  + +P+V+LER +C AS+W+K +YDR++LHL K+ CQLP +PF
Sbjct:    26 VIVGAGPSGLATAACLREEGVPFVVLERADCIASLWQKRTYDRIKLHLPKKVCQLPKMPF 85

Query:    71 PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
             P  YP + ++ QFIE+L+ Y + F I P  ++   V+SA YDE + +W +K ++  S G 
Sbjct:    86 PEDYPEYPTKRQFIEYLESYANKFEITP--QFNECVQSARYDETSGLWRIKTTSSSSSGS 143

Query:   131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
             E+E  Y  R+LVVA+GE      P+I GL     +    GEVIHS +YK+G+ Y GK+VL
Sbjct:   144 EME--YICRWLVVATGENAEKVVPEIDGL-----TTEFEGEVIHSCEYKSGEKYRGKSVL 196

Query:   191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGWVDT 245
             VVG GNSGME++LDLANH A  S+VVRS VHVL RE++      + ++L K+ P   VD 
Sbjct:   197 VVGCGNSGMEVSLDLANHNANASMVVRSSVHVLPREILGKSSFEISMMLMKWFPLWLVDK 256

Query:   246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
             ++++L+ L+ G+L+KYG+ +P  GP  +K   GK PV+D G  EKIKSG+++
Sbjct:   257 ILLILAWLILGNLTKYGLKRPTMGPMELKIVSGKTPVLDIGAMEKIKSGEVE 308

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009851 "auxin biosynthetic process" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2020250 YUC9 "AT1G04180" [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 145/292 (49%), Positives = 203/292 (69%)

Query:    11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
             ++VGAG SGLATAACL  Q +P+V++ER +C AS+W+K +YDRL+LHL K+FCQLP +PF
Sbjct:    26 VIVGAGPSGLATAACLHDQGVPFVVVERSDCIASLWQKRTYDRLKLHLPKKFCQLPKMPF 85

Query:    71 PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
             P  YP + ++ QFI++L+ Y + F+I P   + +SVESA +DE + +W V+ +   S G 
Sbjct:    86 PDHYPEYPTKRQFIDYLESYANRFDIKPE--FNKSVESARFDETSGLWRVRTT---SDGE 140

Query:   131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
             E+E  Y  R+LVVA+GE      P+I GL +        GEVIH+ +YK+G+ + GK VL
Sbjct:   141 EME--YICRWLVVATGENAERVVPEINGLMTEFD-----GEVIHACEYKSGEKFRGKRVL 193

Query:   191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY-----LGVVLFKYVPFGWVDT 245
             VVG GNSGME++LDLANH A TS+VVRS VHVL RE++      + V++ K++P   VD 
Sbjct:   194 VVGCGNSGMEVSLDLANHNAITSMVVRSSVHVLPREIMGKSTFGISVMMMKWLPLWLVDK 253

Query:   246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
             L+++LS LV G LS YG+ +P  GP  +K+  GK PV+D G  EKIKSG ++
Sbjct:   254 LLLILSWLVLGSLSNYGLKRPDIGPMELKSMTGKTPVLDIGALEKIKSGDVE 305

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2117783 YUC8 "AT4G28720" [Arabidopsis thaliana (taxid:3702)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 136/291 (46%), Positives = 198/291 (68%)

Query:    11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
             ++VGAG SGLATAACL  Q++P+V+LER +C AS+W+K +YDRL+LHL KQFCQLP +PF
Sbjct:    26 VIVGAGPSGLATAACLHEQNVPFVVLERADCIASLWQKRTYDRLKLHLPKQFCQLPKMPF 85

Query:    71 PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
             P  +P + ++ QFI++L+ Y + F I P  ++   V++A +DE + +W VK  +  S   
Sbjct:    86 PEDFPEYPTKRQFIDYLESYATRFEINP--KFNECVQTARFDETSGLWRVKTVSK-SEST 142

Query:   131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
             + E  Y  R+LVVA+GE      P+I GL  F      +GEVIH+  YK+G+ + GK VL
Sbjct:   143 QTEVEYICRWLVVATGENAERVMPEIDGLSEF------SGEVIHACDYKSGEKFAGKKVL 196

Query:   191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGWVDT 245
             VVG GNSGME++LDLANH AK S+VVRS +HV+ RE++      L + + ++ P   VD 
Sbjct:   197 VVGCGNSGMEVSLDLANHFAKPSMVVRSSLHVMPREVMGKSTFELAMKMLRWFPLWLVDK 256

Query:   246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQI 296
             ++++LS +V G++ KYG+ +P  GP  +K+  GK PV+D G  EKI+ G+I
Sbjct:   257 ILLVLSWMVLGNIEKYGLKRPEMGPMELKSVKGKTPVLDIGAIEKIRLGKI 307

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009851 "auxin biosynthetic process" evidence=TAS

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

TAIR|locus:2026967 YUC11 "AT1G21430" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 140/296 (47%), Positives = 198/296 (66%)

Query:     3 EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQF 62
             E+   + V+++GAG +GLAT+ACL+  +IP +++ER+ C AS+WK+ SYDRL+LHLAKQF
Sbjct:     2 EKEIKILVLIIGAGPAGLATSACLNRLNIPNIVVERDVCSASLWKRRSYDRLKLHLAKQF 61

Query:    63 CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA 122
             CQLPH+PFPS+ P FVS+  FI +LD Y + FN+ P  RY R+V+SA + +    W VK 
Sbjct:    62 CQLPHMPFPSNTPTFVSKLGFINYLDEYATRFNVNP--RYNRNVKSAYFKDG--QWIVKV 117

Query:   123 SNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLC-SFCSSATGTGEVIHSTQYKNG 181
              N  +    + E YS +F+V A+GE      P+I GL  SF       G+ +HS++YKNG
Sbjct:   118 VNKTTA---LIEVYSAKFMVAATGENGEGVIPEIPGLVESF------QGKYLHSSEYKNG 168

Query:   182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFG 241
             + + GK+VLVVG GNSGMEIA DL+   A  S+VVRS VHVL+R +V +G+ L ++ P  
Sbjct:   169 EKFAGKDVLVVGCGNSGMEIAYDLSKCNANVSIVVRSQVHVLTRCIVRIGMSLLRFFPVK 228

Query:   242 WVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
              VD L ++L+ L + + S+YG+ +P  GPF  K   G+   ID G   +IKSG+IQ
Sbjct:   229 LVDRLCLLLAELRFRNTSRYGLVRPNNGPFLNKLITGRSATIDVGCVGEIKSGKIQ 284

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0022603 "regulation of anatomical structure morphogenesis" evidence=IGI

TAIR|locus:2197863 YUC3 "YUCCA 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 138/293 (47%), Positives = 192/293 (65%)

Query:    11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
             ++VGAG SGLA AA L  + +P++ILER NC AS+W+  +YDRL+LHL KQFCQLP+ PF
Sbjct:    38 VIVGAGPSGLAVAAGLKREGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNYPF 97

Query:    71 PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA-SNLLSPG 129
             P  +P + ++ QFI++L+ Y ++F+I P  ++  +V+SA YDE   +W VK  SN+   G
Sbjct:    98 PDEFPEYPTKFQFIQYLESYAANFDINP--KFNETVQSAKYDETFGLWRVKTISNMGQLG 155

Query:   130 REIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
                E  Y  R++VVA+GE      PD  GL  F     G G+V+H+  YK+G  Y GK V
Sbjct:   156 -SCEFEYICRWIVVATGENAEKVVPDFEGLEDF-----G-GDVLHAGDYKSGGRYQGKKV 208

Query:   190 LVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGWVD 244
             LVVG GNSGME++LDL NH A  S+VVRS VHVL RE+       LGV + KY+P    D
Sbjct:   209 LVVGCGNSGMEVSLDLYNHGANPSMVVRSAVHVLPREIFGKSTFELGVTMMKYMPVWLAD 268

Query:   245 TLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
               ++ L+R++ G+  KYG+ +P+ GP  +K   GK PV+D G   KI+SG+I+
Sbjct:   269 KTILFLARIILGNTDKYGLKRPKIGPLELKNKEGKTPVLDIGALPKIRSGKIK 321

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009851 "auxin biosynthetic process" evidence=IMP

TAIR|locus:2046545 YUC7 "AT2G33230" [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 141/295 (47%), Positives = 193/295 (65%)

Query:    11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
             ++VGAG SGLA AA L  Q +P+VILER NC AS+W+  +YDRL+LHL KQFCQLP+LPF
Sbjct:    33 VIVGAGPSGLAVAADLKRQEVPFVILERANCIASLWQNRTYDRLKLHLPKQFCQLPNLPF 92

Query:    71 PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA---SNLLS 127
             P   P + ++ QFIE+L+ Y +HF++ P  ++  +V+SA YD+   +W V+    S LL 
Sbjct:    93 PEDIPEYPTKYQFIEYLESYATHFDLRP--KFNETVQSAKYDKRFGLWRVQTVLRSELLG 150

Query:   128 PGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGK 187
                E E  Y  R+LVVA+GE      P+  GL  F     G G+V+H+  YK+G+ Y GK
Sbjct:   151 YC-EFE--YICRWLVVATGENAEKVVPEFEGLEDF-----G-GDVLHAGDYKSGERYRGK 201

Query:   188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----YLGVVLFKYVPFGW 242
              VLVVG GNSGME++LDL NH A  S+VVRS VHVL RE++      L V + K++P   
Sbjct:   202 RVLVVGCGNSGMEVSLDLCNHDASPSMVVRSSVHVLPREVLGKSTFELSVTMMKWMPVWL 261

Query:   243 VDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
             VD  +++L+RL+ G+  KYG+ +P  GP  +K   GK PV+D G    IKSG+I+
Sbjct:   262 VDKTLLVLTRLLLGNTDKYGLKRPEIGPLELKNTAGKTPVLDIGAISMIKSGKIK 316

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009684 "indoleacetic acid biosynthetic process" evidence=IMP

TAIR|locus:2119340 YUC2 "YUCCA2" [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 133/292 (45%), Positives = 186/292 (63%)

Query:    11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
             I+VG+G SGLATAACL  + IP +ILER  C AS+W+  +YDRLRLHL K FC+LP +PF
Sbjct:    29 IIVGSGPSGLATAACLKSRDIPSLILERSTCIASLWQHKTYDRLRLHLPKDFCELPLMPF 88

Query:    71 PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
             PSSYP + ++ QF+++L+ Y  HF++ P   + ++VE A +D    +W V+ +       
Sbjct:    89 PSSYPTYPTKQQFVQYLESYAEHFDLKPV--FNQTVEEAKFDRRCGLWRVRTTG--GKKD 144

Query:   131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
             E  EY S R+LVVA+GE      P+I G+  F     G G ++H++ YK+G+ +  K +L
Sbjct:   145 ETMEYVS-RWLVVATGENAEEVMPEIDGIPDF-----G-GPILHTSSYKSGEIFSEKKIL 197

Query:   191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL---GVV--LFKYVPFGWVDT 245
             VVG GNSGME+ LDL N  A  SLVVR  VHVL +EM+ +   G+   L K+ P   VD 
Sbjct:   198 VVGCGNSGMEVCLDLCNFNALPSLVVRDSVHVLPQEMLGISTFGISTSLLKWFPVHVVDR 257

Query:   246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
              ++ +SRLV GD  + G+ +P+ GP   K   GK PV+D GT  KI+SG I+
Sbjct:   258 FLLRMSRLVLGDTDRLGLVRPKLGPLERKIKCGKTPVLDVGTLAKIRSGHIK 309

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009851 "auxin biosynthetic process" evidence=IMP

TAIR|locus:2131322 YUC1 "YUCCA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 127/292 (43%), Positives = 191/292 (65%)

Query:    11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
             I++GAG SGLAT+ACLS + +P +ILER +  AS+WK  +YDRLRLHL K FC+LP L F
Sbjct:    22 IIIGAGPSGLATSACLSSRGVPSLILERSDSIASLWKSKTYDRLRLHLPKHFCRLPLLDF 81

Query:    71 PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
             P  YP + S+ +F+ +L+ Y SHF I P  R+ ++V++A+YD ++  W VK         
Sbjct:    82 PEYYPKYPSKNEFLAYLESYASHFRIAP--RFNKNVQNAAYDSSSGFWRVKT-------H 132

Query:   131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
             +  EY S ++L+VA+GE  +P+ P+I G   F    +G G+++H+++YK+G+ +  + VL
Sbjct:   133 DNTEYLS-KWLIVATGENADPYFPEIPGRKKF----SG-GKIVHASEYKSGEEFRRQKVL 186

Query:   191 VVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL-----GVVLFKYVPFGWVDT 245
             VVG GNSGMEI+LDL  H A   LVVR+ VHVL RE++ +     G+ L K +P   VD 
Sbjct:   187 VVGCGNSGMEISLDLVRHNASPHLVVRNTVHVLPREILGVSTFGVGMTLLKCLPLRLVDK 246

Query:   246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
              +++++ L +G+  + G+ +P+ GP  +K   GK PV+D G    I+SG IQ
Sbjct:   247 FLLLMANLSFGNTDRLGLRRPKTGPLELKNVTGKSPVLDVGAMSLIRSGMIQ 298

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009851 "auxin biosynthetic process" evidence=RCA;IMP

GO:0022603 "regulation of anatomical structure morphogenesis" evidence=IGI

GO:2000024 "regulation of leaf development" evidence=IGI

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0010229 "inflorescence development" evidence=IGI;RCA

GO:0048825 "cotyledon development" evidence=IGI;RCA

GO:0048827 "phyllome development" evidence=IGI

TAIR|locus:2147962 YUC4 "AT5G11320" [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 105/290 (36%), Positives = 157/290 (54%)

Query:    11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF 70
             I+VGAG SGLA AACLS + +P VILER +C AS+W+K +YDRL+LHL K FC+LP +PF
Sbjct:    18 IIVGAGPSGLAVAACLSNRGVPSVILERTDCLASLWQKRTYDRLKLHLPKHFCELPLMPF 77

Query:    71 PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130
             P ++P + S+  FI +++ Y + FNI P   + ++VE A +D+A+ +WNVK  +    G 
Sbjct:    78 PKNFPKYPSKQLFISYVESYAARFNIKPV--FNQTVEKAEFDDASGLWNVKTQD----G- 130

Query:   131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVL 190
                  Y+  +LVVA+GE   P  P+I GL  F      T      + + N K      V+
Sbjct:   131 ----VYTSTWLVVATGENAEPVFPNIPGLKKFTGPVVHTSAYKSGSAFANRKVL----VV 182

Query:   191 VVGSGNSGMEIALDLAN---HAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLM 247
               G+    + + L   N   H    + V   P          + + L K+ P   VD  +
Sbjct:   183 GCGNSGMEVSLDLCRYNALPHMVVRNSVHVLPRDFFGLSTFGIAMTLLKWFPLKLVDKFL 242

Query:   248 VMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQ 297
             ++L+    G+    G+ +P+ GP  +K   GK PV+D G    I+SGQI+
Sbjct:   243 LLLANSTLGNTDLLGLRRPKTGPIELKNVTGKTPVLDVGAISLIRSGQIK 292

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009851 "auxin biosynthetic process" evidence=RCA;IDA;IMP

GO:0022603 "regulation of anatomical structure morphogenesis" evidence=IGI

GO:2000024 "regulation of leaf development" evidence=IGI

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0010229 "inflorescence development" evidence=IGI;RCA

GO:0048825 "cotyledon development" evidence=IGI;RCA

GO:0048827 "phyllome development" evidence=IGI

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0047434 "indolepyruvate decarboxylase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FVQ0	YUC10_ARATH	1, ., 1, 4, ., 1, 3, ., -	0.5034	0.9141	0.7232	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: FML12 flavine-containing monoxygenase (377 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	303
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	1e-48
pfam00743	532	pfam00743, FMO-like, Flavin-binding monooxygenase-	1e-21
TIGR04046	400	TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido	8e-16
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	5e-14
pfam13434	335	pfam13434, K_oxygenase, L-lysine 6-monooxygenase (	2e-12
PLN02172	461	PLN02172, PLN02172, flavin-containing monooxygenas	3e-10
TIGR04018	316	TIGR04018, Bthiol_YpdA, putative bacillithiol syst	4e-09
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	1e-08
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	2e-05
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	8e-05
COG3486	436	COG3486, IucD, Lysine/ornithine N-monooxygenase [S	1e-04
PRK15317	517	PRK15317, PRK15317, alkyl hydroperoxide reductase	2e-04
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	3e-04
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	0.001
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	0.001

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score =  167 bits (424), Expect = 1e-48
 Identities = 87/292 (29%), Positives = 131/292 (44%), Gaps = 22/292 (7%)

Query: 8   VEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLP 66
            +V ++GAG SGLA A  L    +P +VI E+ +     W+   Y  LRL   K     P
Sbjct: 9   TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFP 68

Query: 67  HLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL 126
            LPF      F   A+  +++  Y+  + +   IR+   VE A +DE T  W V  S+  
Sbjct: 69  FLPFRWD-EAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSD-- 125

Query: 127 SPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGG 186
             G   E   +  F+VVA+G  + P+ PD  GL  F       G ++HS  + N +   G
Sbjct: 126 --GGTGE--LTADFVVVATGHLSEPYIPDFAGLDEF------KGRILHSADWPNPEDLRG 175

Query: 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTL 246
           K VLV+G+G S ++IA +LA   A  +L  RSP H+L +    LG  +   +        
Sbjct: 176 KRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKP--LLGEEVGGRLALRRALPA 233

Query: 247 MVMLSRLVYGDLSK---YGIPKPREGPFFMKA---AYGKYPVIDAGTCEKIK 292
              L R    D        +P        ++A   A  ++ V+DAG  E + 
Sbjct: 234 GWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLG 285

Length = 443

>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like

 Score = 94.5 bits (235), Expect = 1e-21
 Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 21/228 (9%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK---------KYSYDRLRLHLAK 60
           V ++GAG SGL++  C   + +     ER +    +W+            Y  +  + +K
Sbjct: 4   VAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGLWRFTEHVEEGRASIYKSVVTNSSK 63

Query: 61  QFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASY--DEATN-M 117
           +       PFP  YP F+  ++F+E+L  +  HF++   I+++ +V S +   D +T+  
Sbjct: 64  EMSCFSDFPFPEDYPNFMHNSKFLEYLRMFAKHFDLLKYIQFKTTVCSVTKRPDFSTSGQ 123

Query: 118 WNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQ 177
           W V        G++    +    ++V +G  TNP  P    L SF       G+  HS  
Sbjct: 124 WEVVTE---HEGKQESAVFDA--VMVCTGHHTNPHLP----LESFPGINKFKGQYFHSRD 174

Query: 178 YKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR 225
           YK+ + + GK VLV+G GNSG +IA++L+  AA+  L  R+   VLSR
Sbjct: 175 YKHPEGFQGKRVLVIGLGNSGGDIAVELSRTAAQVFLSTRTGSWVLSR 222

This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532

>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family

 Score = 76.6 bits (189), Expect = 8e-16
 Identities = 58/201 (28%), Positives = 92/201 (45%), Gaps = 28/201 (13%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP 69
           V+++GAG +GL+ +  L    I +V+LE+     S W+   +D   L      C+LP  P
Sbjct: 3   VVIIGAGQAGLSVSYYLKQAGIDHVVLEKHTVAHS-WRDERWDSFCLVTPNWQCRLPGHP 61

Query: 70  FPSSYPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSP 128
           +  + P  F+ + + + +LD Y   FN  P +R    V S     A   + V  S     
Sbjct: 62  YDGTDPDGFMVKDEIVAYLDGYARSFN--PPVREGTEVTSLRKHGAGG-FRVSTS----- 113

Query: 129 GREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEV--IHSTQYKNGK--PY 184
                  ++   +V+A+G    P  P +        +     +V  +HS++Y+N    P 
Sbjct: 114 ----AGAFTADQVVIATGGYHVPVIPPL--------AERLPADVLQLHSSEYRNPDQLPD 161

Query: 185 GGKNVLVVGSGNSGMEIALDL 205
           G   VLVVGSG SG +IA DL
Sbjct: 162 GA--VLVVGSGQSGCQIAEDL 180

Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 68.9 bits (169), Expect = 5e-14
 Identities = 47/219 (21%), Positives = 81/219 (36%), Gaps = 34/219 (15%)

Query: 13  VGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQF--------- 62
           VGAG +G+A A  L      P +I++R       W+K+ Y  +RLH    F         
Sbjct: 3   VGAGAAGMAFADHLLDLGDAPVIIVDRGAQPGGHWRKW-YPFVRLHQPSFFYGDFGMPDL 61

Query: 63  --CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV 120
               +   P         S A+   +L+     + +   IR    V +   D     + V
Sbjct: 62  NALSIDTSPKWDGKAELASGAEIAAYLEDLARRYGL--PIRLSTRVTAVERDGGR--FVV 117

Query: 121 KASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKN 180
           + ++         E     ++V A+G  + P  P   G  +         E +H      
Sbjct: 118 RLTD--------GETVRADYVVDATGAFSVPKPPGFPGADA---------EGVHLVDVLE 160

Query: 181 GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
                GK V V+G G++ ++ AL+L +     + + R P
Sbjct: 161 RIDLKGKTVAVIGGGHTAIDAALNLLDLGKDVTWITRRP 199

Length = 202

>gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring)

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 21/147 (14%)

Query: 77  FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136
           F SR +F ++L    S      ++R+   VE    D++  +  V   +    G E    Y
Sbjct: 91  FPSRREFNDYLQWAASQL---ENVRFGAEVEEVEPDDSGFLLRVHTRD---TGTEQT--Y 142

Query: 137 SGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKP--YGGKNVLVVGS 194
             R LV+ +G  T P+ P+       C+       V HS++Y   KP    GK + VVG 
Sbjct: 143 LARNLVLGTG--TTPYIPE-------CAKPLPGERVFHSSEYLLRKPRLLAGKRITVVGG 193

Query: 195 GNSGMEIALDLAN--HAAKTSLVVRSP 219
           G S  EI LDL       + + V R P
Sbjct: 194 GQSAAEIFLDLLRRQPGYQLTWVTRRP 220

This is family of Rossmann fold oxidoreductases that catalyzes the NADPH-dependent hydroxylation of lysine at the N6 position, EC:1.14.13.59. Length = 335

>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX

 Score = 60.3 bits (146), Expect = 3e-10
 Identities = 61/247 (24%), Positives = 99/247 (40%), Gaps = 55/247 (22%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS------------------- 50
           V ++GAG +GL  A  L  +    V+ ERE     +W  Y+                   
Sbjct: 13  VAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV-YTPKSESDPLSLDPTRSIVHS 71

Query: 51  --YDRLRLHLAKQFCQLPHLPF----------PSSYPMFVSRAQFIEHLDHYVSHFNIGP 98
             Y+ LR +L ++       PF             YP   S  + + +L  +   F I  
Sbjct: 72  SVYESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYP---SHREVLAYLQDFAREFKIEE 128

Query: 99  SIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158
            +R++   E    +     W V++ N  S G   +E +    +VV +G  T P    I G
Sbjct: 129 MVRFE--TEVVRVEPVDGKWRVQSKN--SGGFSKDEIFDA--VVVCNGHYTEPNVAHIPG 182

Query: 159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218
           + S+       G+ IHS  Y+   P+  + V+V+G+  SG +I+ D+A         V  
Sbjct: 183 IKSW------PGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAK--------VAK 228

Query: 219 PVHVLSR 225
            VH+ SR
Sbjct: 229 EVHIASR 235

Length = 461

>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family

 Score = 56.4 bits (137), Expect = 4e-09
 Identities = 57/226 (25%), Positives = 89/226 (39%), Gaps = 60/226 (26%)

Query: 9   EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSY----------DRLRLHL 58
           +VI++GAG  GLA A       + Y+I+E+ N   SI   Y Y          +RL    
Sbjct: 1   DVIIIGAGPCGLACAIEAQKAGLSYLIIEKGNLVNSI---YRYPTNMTFFSTSERL---- 53

Query: 59  AKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHY---VSHFNIGPSIRYQRSVESASYDEAT 115
                ++  +PF S  P    +    E L++Y      F +  +IR    V      +  
Sbjct: 54  -----EIGGIPFISENP----KPTRNEALEYYRRVAERFKL--NIRLYEEVLKVKKTDGG 102

Query: 116 NMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGE---- 171
             + V               Y  + ++VA+G    P   ++             GE    
Sbjct: 103 --FEVTTEKGT---------YQAKNVIVATGYYDIPNLLNV------------PGEDLPK 139

Query: 172 VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           V H   YK   PY G+ V+VVG  NS ++ AL+L    A+ ++V R
Sbjct: 140 VSH--YYKEAHPYFGQKVVVVGGSNSAVDAALELYRKGAEVTMVHR 183

Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 44/214 (20%), Positives = 73/214 (34%), Gaps = 44/214 (20%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILEREN--CYAS--IWKKYSYDRLRLHLAKQFCQL 65
           V+++G G +GLA A  L+   +   ++ERE   CY    + KK   +             
Sbjct: 2   VVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLE------------- 48

Query: 66  PHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL 125
                       +  A  +   +     F +   +     V      E T         +
Sbjct: 49  -------VAE-GLELAIGLALPEEVYKEFGV--EVLLGTEVVDIDRGEKT---------V 89

Query: 126 LSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYG 185
           +    E     +   L++A+G    P  P I G+            VI S +        
Sbjct: 90  VLKDVETGREITYDKLIIATG--ARPRIPGIPGVEVA-----TLRGVIDSDEILELLELP 142

Query: 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
            K V+VVG G  G+E+A  LA    + ++V R  
Sbjct: 143 -KRVVVVGGGYIGLELAAALAKLGKEVTVVERRD 175

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 9/84 (10%)

Query: 136 YSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSG 195
           Y  + +++A+G         + G   F       G+ +      +G  + GK+V+V+G G
Sbjct: 102 YEAKAVIIATG--AGARKLGVPGEEEF------EGKGVSYCATCDGF-FKGKDVVVIGGG 152

Query: 196 NSGMEIALDLANHAAKTSLVVRSP 219
           +S +E AL L+  A K +LV R  
Sbjct: 153 DSAVEEALYLSKIAKKVTLVHRRD 176

Length = 305

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 40.3 bits (95), Expect = 8e-05
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
            V+VVG G  G+E A  LA   +K ++V R  
Sbjct: 1   RVVVVGGGYIGLEFASALAKLGSKVTVVERRD 32

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|226017 COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 28/135 (20%)

Query: 77  FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVE---SASYDEATNMWNVKASNLLSPGREIE 133
            + R ++ ++     S     PS+R+   V    S   D    ++ V A+          
Sbjct: 94  HIPRREYNDYCQWAASQL---PSLRFGEEVTDISSLDGDAVVRLFVVTANG--------- 141

Query: 134 EYYSGRFLVVASGETTNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGKP--YGGKNVL 190
             Y  R LV+  G  T P+ P   R L            V HS++Y    P     ++V 
Sbjct: 142 TVYRARNLVLGVG--TQPYIPPCFRSLIG--------ERVFHSSEYLERHPELLQKRSVT 191

Query: 191 VVGSGNSGMEIALDL 205
           V+GSG S  EI LDL
Sbjct: 192 VIGSGQSAAEIFLDL 206

Length = 436

>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 14/22 (63%), Positives = 17/22 (77%)

Query: 186 GKNVLVVGSGNSGMEIALDLAN 207
           GK V V+G GNSG+E A+DLA 
Sbjct: 351 GKRVAVIGGGNSGVEAAIDLAG 372

Length = 517

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           +  K V VVG G+S +E AL L   A K +LV R
Sbjct: 138 FKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHR 171

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 9/92 (9%)

Query: 7  GVEVIMVGAGTSGLATAACLSLQSIPYVILE-RENCYASIWKKYSYDRLRLHLAKQFCQL 65
            +VI+VGAG +GL+ A  L        ILE R+          +       L  Q+   
Sbjct: 7  TADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGE-YTDLGGQYINP 65

Query: 66 PH-------LPFPSSYPMFVSRAQFIEHLDHY 90
           H         F      F+     +      
Sbjct: 66 THDALLAYAKEFGVPLEPFIRDGDNVIGYVGS 97

Length = 450

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 15/27 (55%), Positives = 21/27 (77%)

Query: 180 NGKPYGGKNVLVVGSGNSGMEIALDLA 206
           +G  + GK+V V+G GNSG+E A+DLA
Sbjct: 346 DGPFFKGKDVAVIGGGNSGIEAAIDLA 372

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	303
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	100.0
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	100.0
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	100.0
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	100.0
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	100.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.92
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.92
PRK10262	321	thioredoxin reductase; Provisional	99.92
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.91
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.91
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.9
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.9
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.89
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.89
PRK14694	468	putative mercuric reductase; Provisional	99.89
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.89
PRK14727	479	putative mercuric reductase; Provisional	99.89
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.89
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.89
PRK06370	463	mercuric reductase; Validated	99.88
PLN02507	499	glutathione reductase	99.88
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.88
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	99.88
TIGR02053	463	MerA mercuric reductase. This model represents the	99.87
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.87
PRK06116	450	glutathione reductase; Validated	99.87
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.87
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.87
PRK13748	561	putative mercuric reductase; Provisional	99.87
PTZ00058	561	glutathione reductase; Provisional	99.86
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.86
PTZ00052	499	thioredoxin reductase; Provisional	99.86
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.86
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.86
PLN02546	558	glutathione reductase	99.85
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.85
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.85
PRK12831	464	putative oxidoreductase; Provisional	99.85
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.84
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.84
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.84
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.84
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.83
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.83
PRK07846	451	mycothione reductase; Reviewed	99.83
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.83
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.83
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.83
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.82
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.82
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	99.82
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.81
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.81
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.81
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.81
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.8
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.8
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.79
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.79
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.78
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.78
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.78
PLN02852	491	ferredoxin-NADP+ reductase	99.78
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.78
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.77
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.77
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.76
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.74
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.73
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.73
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.72
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.71
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.7
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.68
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.67
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.67
PRK13984	604	putative oxidoreductase; Provisional	99.66
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.66
PRK09897	534	hypothetical protein; Provisional	99.65
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	99.64
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.61
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.61
PTZ00188	506	adrenodoxin reductase; Provisional	99.6
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.56
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.55
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.52
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.51
COG2081	408	Predicted flavoproteins [General function predicti	99.5
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	99.46
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.43
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.38
PRK06847	375	hypothetical protein; Provisional	99.35
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.34
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.33
PRK10157	428	putative oxidoreductase FixC; Provisional	99.33
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.32
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.32
PRK08244	493	hypothetical protein; Provisional	99.32
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.32
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.31
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.31
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.3
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.3
PRK08013	400	oxidoreductase; Provisional	99.3
PRK06184	502	hypothetical protein; Provisional	99.28
PLN02463	447	lycopene beta cyclase	99.28
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.28
PRK06834	488	hypothetical protein; Provisional	99.26
PRK10015	429	oxidoreductase; Provisional	99.26
PRK07190	487	hypothetical protein; Provisional	99.26
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.26
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.25
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.25
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.25
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.24
PRK07045	388	putative monooxygenase; Reviewed	99.24
PRK06185	407	hypothetical protein; Provisional	99.23
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.23
PRK06126	545	hypothetical protein; Provisional	99.23
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.22
PRK06753	373	hypothetical protein; Provisional	99.22
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.2
PRK08163	396	salicylate hydroxylase; Provisional	99.2
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.19
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.19
PRK07588	391	hypothetical protein; Provisional	99.19
PRK07538	413	hypothetical protein; Provisional	99.19
PRK11445	351	putative oxidoreductase; Provisional	99.18
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.18
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.18
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.16
PRK09126	392	hypothetical protein; Provisional	99.16
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.16
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.16
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.16
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.16
PRK07236	386	hypothetical protein; Provisional	99.15
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.15
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.15
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.13
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.12
PRK08294	634	phenol 2-monooxygenase; Provisional	99.12
PLN02697	529	lycopene epsilon cyclase	99.12
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.11
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.1
PRK06475	400	salicylate hydroxylase; Provisional	99.09
PRK05868	372	hypothetical protein; Validated	99.09
PRK06996	398	hypothetical protein; Provisional	99.09
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.09
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.08
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.06
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.04
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.04
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.03
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.02
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.02
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.01
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.0
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.0
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.99
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.98
PLN02661	357	Putative thiazole synthesis	98.97
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.97
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.97
PLN02985	514	squalene monooxygenase	98.93
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.92
PRK07121	492	hypothetical protein; Validated	98.92
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.92
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.91
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.91
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.89
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.89
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.89
PRK08274	466	tricarballylate dehydrogenase; Validated	98.89
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.88
KOG2755	334	consensus Oxidoreductase [General function predict	98.88
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.88
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.88
PRK08275	554	putative oxidoreductase; Provisional	98.86
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.85
COG0579	429	Predicted dehydrogenase [General function predicti	98.85
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.84
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.84
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.84
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.83
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.83
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.82
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.82
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.82
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.82
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.82
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.82
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.81
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.8
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.8
TIGR02053	463	MerA mercuric reductase. This model represents the	98.8
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.79
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.78
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.78
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.78
PRK07804	541	L-aspartate oxidase; Provisional	98.77
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.77
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.77
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.74
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.74
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.74
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.74
PRK08401	466	L-aspartate oxidase; Provisional	98.74
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.73
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.72
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.72
PRK05257	494	malate:quinone oxidoreductase; Validated	98.71
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.7
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.7
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.7
PRK06370	463	mercuric reductase; Validated	98.7
PRK12839	572	hypothetical protein; Provisional	98.69
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.69
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.69
PLN02815	594	L-aspartate oxidase	98.69
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.68
PRK06175	433	L-aspartate oxidase; Provisional	98.68
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.67
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.67
PRK06116	450	glutathione reductase; Validated	98.67
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.67
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.66
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.65
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.65
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.64
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.63
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.63
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.63
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.63
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.62
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.62
PTZ00367	567	squalene epoxidase; Provisional	98.61
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.61
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.6
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.6
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.6
PRK07846	451	mycothione reductase; Reviewed	98.6
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.59
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.59
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.59
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.59
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.59
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.58
PRK09077	536	L-aspartate oxidase; Provisional	98.58
PLN02507	499	glutathione reductase	98.58
PRK07208	479	hypothetical protein; Provisional	98.58
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.58
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.57
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.57
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.57
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.56
PRK07395	553	L-aspartate oxidase; Provisional	98.56
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.55
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.55
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.55
PRK08071	510	L-aspartate oxidase; Provisional	98.55
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.55
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.54
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.52
PRK14727	479	putative mercuric reductase; Provisional	98.51
PRK14694	468	putative mercuric reductase; Provisional	98.51
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.5
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.48
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.47
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.47
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.47
PTZ00058	561	glutathione reductase; Provisional	98.47
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.46
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.46
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.46
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.46
PRK13748	561	putative mercuric reductase; Provisional	98.43
PRK07233	434	hypothetical protein; Provisional	98.42
PLN02576	496	protoporphyrinogen oxidase	98.4
PTZ00052	499	thioredoxin reductase; Provisional	98.4
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.4
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.39
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.38
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.38
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.37
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	98.37
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.37
PLN02268	435	probable polyamine oxidase	98.36
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.35
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.33
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.33
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.33
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.33
PLN02676	487	polyamine oxidase	98.33
PRK07512	513	L-aspartate oxidase; Provisional	98.32
COG3349	485	Uncharacterized conserved protein [Function unknow	98.32
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.32
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.32
PLN02546	558	glutathione reductase	98.3
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.29
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.28
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.28
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.27
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.26
PLN02568	539	polyamine oxidase	98.23
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.22
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.22
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	98.21
PRK10262	321	thioredoxin reductase; Provisional	98.21
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.19
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.18
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.13
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.13
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.13
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.1
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.09
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.06
PLN02529	738	lysine-specific histone demethylase 1	98.06
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.05
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	98.05
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.04
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.01
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.0
KOG2852	380	consensus Possible oxidoreductase [General functio	98.0
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	97.98
PLN02487	569	zeta-carotene desaturase	97.97
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.95
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	97.94
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.91
KOG2853	509	consensus Possible oxidoreductase [General functio	97.89
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.88
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.88
PLN02612	567	phytoene desaturase	97.87
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.86
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.85
PRK12831	464	putative oxidoreductase; Provisional	97.81
COG3573	552	Predicted oxidoreductase [General function predict	97.8
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.79
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.79
PLN03000	881	amine oxidase	97.77
PLN02976	1713	amine oxidase	97.72
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.72
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.71
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.71
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.7
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.65
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	97.63
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.57
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.54
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.52
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.51
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.49
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.49
PRK02106	560	choline dehydrogenase; Validated	97.45
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.4
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.36
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.34
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.34
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.32
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.32
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.28
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	97.18
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.17
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.16
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.03
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.99
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	96.99
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	96.98
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	96.97
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	96.94
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.91
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.91
PLN02785	587	Protein HOTHEAD	96.89
KOG2960	328	consensus Protein involved in thiamine biosynthesi	96.88
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	96.82
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.82
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.76
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.64
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.59
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.56
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	96.55
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.51
PRK13984	604	putative oxidoreductase; Provisional	96.49
PTZ00188	506	adrenodoxin reductase; Provisional	96.48
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	96.48
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.44
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.41
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.38
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.35
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	96.25
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.21
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.2
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.12
PLN02852	491	ferredoxin-NADP+ reductase	96.08
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.02
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.0
PRK07236	386	hypothetical protein; Provisional	95.91
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	95.91
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	95.89
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.88
PRK06567	1028	putative bifunctional glutamate synthase subunit b	95.86
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.83
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	95.82
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	95.81
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.78
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	95.77
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.76
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.7
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	95.69
PRK06847	375	hypothetical protein; Provisional	95.66
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.66
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.63
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.57
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.56
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.56
PRK08163	396	salicylate hydroxylase; Provisional	95.55
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	95.54
PRK05868	372	hypothetical protein; Validated	95.53
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	95.51
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	95.47
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.46
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.45
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	95.43
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.42
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	95.41
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.39
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.39
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.38
PRK07233	434	hypothetical protein; Provisional	95.37
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	95.35
PRK06753	373	hypothetical protein; Provisional	95.35
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	95.33
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.32
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	95.32
PRK11883	451	protoporphyrinogen oxidase; Reviewed	95.29
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.25
PRK06475	400	salicylate hydroxylase; Provisional	95.22
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	95.19
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.18
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	95.16
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.16
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	95.08
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.08
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	95.05
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	95.05
PRK09126	392	hypothetical protein; Provisional	95.05
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.04
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.04
PRK07588	391	hypothetical protein; Provisional	95.02
PRK07045	388	putative monooxygenase; Reviewed	95.01
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	94.99
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	94.99
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.98
PLN02268	435	probable polyamine oxidase	94.96
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	94.94
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.94
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	94.93
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	94.93
PRK07208	479	hypothetical protein; Provisional	94.91
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.87
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.87
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	94.86
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.86
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	94.85
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.84
PRK11728	393	hydroxyglutarate oxidase; Provisional	94.84
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	94.83
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.83
PRK08013	400	oxidoreductase; Provisional	94.82
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	94.82
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.78
COG3349	485	Uncharacterized conserved protein [Function unknow	94.78
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	94.77
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	94.77
PRK06184	502	hypothetical protein; Provisional	94.76
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.76
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	94.75
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.74
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	94.74
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	94.72
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.71
PRK08244	493	hypothetical protein; Provisional	94.7
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	94.7
PRK04148	134	hypothetical protein; Provisional	94.69
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	94.69
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	94.66
PRK06185	407	hypothetical protein; Provisional	94.64
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	94.63
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	94.63
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.63
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	94.63
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	94.62
PLN02464	627	glycerol-3-phosphate dehydrogenase	94.62
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	94.61
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.61
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	94.59
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	94.58
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	94.58
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.58
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.57

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=100.00  E-value=2.9e-47  Score=349.21  Aligned_cols=274  Identities=33%  Similarity=0.540  Sum_probs=173.3

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC---------CCCceEEecCcccccCCCCCCCCCCCCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY---------SYDRLRLHLAKQFCQLPHLPFPSSYPMFV   78 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (303)
                      ++|+|||||++||++|+.|.+.|+++++||+++.+||+|++.         .|+++..+.++.++.|+++|+|++++.|+
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~   81 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP   81 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence            689999999999999999999999999999999999999852         58899999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCC---CCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCC
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA---TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD  155 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~  155 (303)
                      ++.++.+|++.|++++++..+|+|+++|+++++.++   .+.|.|++.+.+    +.++ -.||.||+|||.++.|++|.
T Consensus        82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g----~~~~-~~fD~VvvatG~~~~P~~P~  156 (531)
T PF00743_consen   82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDG----KEET-EEFDAVVVATGHFSKPNIPE  156 (531)
T ss_dssp             BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTT----EEEE-EEECEEEEEE-SSSCESB--
T ss_pred             CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCC----eEEE-EEeCeEEEcCCCcCCCCCCh
Confidence            999999999999999999999999999999998653   368999886532    3345 57999999999999999995


Q ss_pred             --CCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH-----
Q 022090          156 --IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-----  228 (303)
Q Consensus       156 --~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~-----  228 (303)
                        +||++.|      +|.++|+.+|+++..+++|+|+|||+|+||+|+|.+++..+++|+++.|++.|++|+...     
T Consensus       157 ~~~~G~e~F------~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~  230 (531)
T PF00743_consen  157 PSFPGLEKF------KGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF  230 (531)
T ss_dssp             ---CTGGGH------CSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred             hhhhhhhcC------CeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence              9999999      999999999999999999999999999999999999999999999999999999998653     


Q ss_pred             ------HHHHHHHhhCCHHHHHHHHHHHHHHHhcCccccCCCCCCCCccceeccCCCceEEecchhcccccceEEEEe
Q 022090          229 ------YLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQNLL  300 (303)
Q Consensus       229 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~  300 (303)
                            +....+.+.+|....+.+........+ +.+.+|+. |.++.+      ...|+++++++++|.+|+|+++.
T Consensus       231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~-~~~~~gl~-p~~~~~------~~~~~ind~l~~~i~~G~i~vk~  300 (531)
T PF00743_consen  231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRF-DHENYGLK-PKHRFF------SQHPTINDELPNRIRSGRIKVKP  300 (531)
T ss_dssp             ----------------------------------------------------------------------------EE
T ss_pred             ccccccccccccccccccccccccccccccccc-cccccccc-cccccc------ccccccccccccccccccccccc
Confidence                  111223334555444443332222222 45567774 655544      47899999999999999999864

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8e-39  Score=288.96  Aligned_cols=210  Identities=35%  Similarity=0.635  Sum_probs=195.0

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCCC-eEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHH
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (303)
                      ..++||+|||||++|+++|.+|.++|.+ ++||||++.+||+|+.++|+++.++.+..+++|+++|++ +...++....+
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~~   84 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAEI   84 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-CcccCCCcccH
Confidence            3568999999999999999999999998 999999999999999999999999999999999999987 44566666678


Q ss_pred             HHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022090           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (303)
Q Consensus        84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~  163 (303)
                      .+|+..+++.+++..+|.+++.|+.++++++++.|+|++.++..     .+ +.||+||+|||.++.|++|.|+|.+.| 
T Consensus        85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~-----~~-~~a~~vV~ATG~~~~P~iP~~~G~~~f-  157 (443)
T COG2072          85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT-----GE-LTADFVVVATGHLSEPYIPDFAGLDEF-  157 (443)
T ss_pred             HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe-----ee-EecCEEEEeecCCCCCCCCCCCCccCC-
Confidence            99999999999999999999999999999888899999998743     34 569999999999999999999999999 


Q ss_pred             cCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhh
Q 022090          164 SSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (303)
Q Consensus       164 ~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~  227 (303)
                           .|.++|+.++.+...+++|+|+|||+|+||+|++.+|++.|++||++.|++.+++|...
T Consensus       158 -----~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~  216 (443)
T COG2072         158 -----KGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPL  216 (443)
T ss_pred             -----CceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccc
Confidence                 99999999999999999999999999999999999999999999999999999999765

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=100.00  E-value=3e-36  Score=273.33  Aligned_cols=202  Identities=26%  Similarity=0.439  Sum_probs=181.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC--------------------CCCceEEecCcccccC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------------------SYDRLRLHLAKQFCQL   65 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~--------------------~~~~~~~~~~~~~~~~   65 (303)
                      ..++|+|||||++||++|+.|++.|++|++||+++.+||.|...                    +|++++.+.+...+.|
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f   88 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY   88 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence            35899999999999999999999999999999999999999652                    4777888899999999


Q ss_pred             CCCCCCCC-------CCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEee
Q 022090           66 PHLPFPSS-------YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG  138 (303)
Q Consensus        66 ~~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a  138 (303)
                      +++|++..       .+.|+++.++.+|++++++++++..+|+++++|+++++.+  +.|.|.+.++.+   ...+ ..|
T Consensus        89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~~---~~~~-~~~  162 (461)
T PLN02172         89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSGG---FSKD-EIF  162 (461)
T ss_pred             CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCCC---ceEE-EEc
Confidence            99987653       3678999999999999999999998889999999998865  689999875421   2235 679


Q ss_pred             CEEEEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeec
Q 022090          139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (303)
Q Consensus       139 d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~  218 (303)
                      |.||+|||.++.|++|.+||.+.|      .|..+|+..++.+..+++|+|+|||+|.||+|+|.+|+..+.+||+++|+
T Consensus       163 d~VIvAtG~~~~P~~P~ipG~~~f------~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~  236 (461)
T PLN02172        163 DAVVVCNGHYTEPNVAHIPGIKSW------PGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRA  236 (461)
T ss_pred             CEEEEeccCCCCCcCCCCCCcccC------CceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence            999999999999999999999999      99999999999988899999999999999999999999999999999997


Q ss_pred             C
Q 022090          219 P  219 (303)
Q Consensus       219 ~  219 (303)
                      +
T Consensus       237 ~  237 (461)
T PLN02172        237 S  237 (461)
T ss_pred             c
Confidence            6

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.4e-36  Score=268.21  Aligned_cols=201  Identities=35%  Similarity=0.559  Sum_probs=183.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC--------C-CCceEEecCcccccCCCCCCCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------S-YDRLRLHLAKQFCQLPHLPFPSSYPM   76 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (303)
                      ..++|+|||||+|||++|+.|.++|+++++|||.+.+||.|.+.        . |.+++++.++.+++++++|+++..+.
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~   84 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR   84 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence            35799999999999999999999999999999999999999987        5 99999999999999999999998666


Q ss_pred             C-CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCC
Q 022090           77 F-VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD  155 (303)
Q Consensus        77 ~-~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~  155 (303)
                      + +++.++.+||+.|++++++..+|+++++|..++...+ +.|.|...+..+.   ... ..||.|++|||.+..|++|.
T Consensus        85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~---~~~-~ifd~VvVctGh~~~P~~P~  159 (448)
T KOG1399|consen   85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQ---IEE-EIFDAVVVCTGHYVEPRIPQ  159 (448)
T ss_pred             cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcc---eeE-EEeeEEEEcccCcCCCCCCc
Confidence            5 8888999999999999999999999999999887653 6899999875431   245 67999999999987799999


Q ss_pred             CCC--ccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEee
Q 022090          156 IRG--LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR  217 (303)
Q Consensus       156 ~~g--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r  217 (303)
                      ++|  .+.|      .|.++|+.+|+.+..+.+|+|+|||.|+||+|++.+++..+.+|++..+
T Consensus       160 ~~g~~~~~f------~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~  217 (448)
T KOG1399|consen  160 IPGPGIESF------KGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV  217 (448)
T ss_pred             CCCCchhhc------CCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee
Confidence            988  6799      9999999999999999999999999999999999999999999988865

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=100.00  E-value=5.7e-33  Score=227.55  Aligned_cols=191  Identities=35%  Similarity=0.597  Sum_probs=135.9

Q ss_pred             EEECCcHHHHHHHHHHhhCCCC-eEEEecCCCCCCccCcCCCCceEEecCccc---ccCCCCCCCC--------CCCCCC
Q 022090           11 IMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQF---CQLPHLPFPS--------SYPMFV   78 (303)
Q Consensus        11 vIIGaG~aGl~~A~~l~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~~~   78 (303)
                      +|||||++||++|..|.++|.+ ++|||+++.+||.|... ++...+..+..+   +.++++....        ....++
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY-YSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP   79 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH--TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe-CCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence            6999999999999999999998 99999999999999842 222222222221   1222211110        124567


Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCC
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG  158 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g  158 (303)
                      +..++.+|++++++++++..  +++++|+++++++  +.|.|++.++       .+ +.|++||+|||..+.|++|.++|
T Consensus        80 ~~~~v~~yl~~~~~~~~l~i--~~~~~V~~v~~~~--~~w~v~~~~~-------~~-~~a~~VVlAtG~~~~p~~p~~~g  147 (203)
T PF13738_consen   80 SGEEVLDYLQEYAERFGLEI--RFNTRVESVRRDG--DGWTVTTRDG-------RT-IRADRVVLATGHYSHPRIPDIPG  147 (203)
T ss_dssp             BHHHHHHHHHHHHHHTTGGE--ETS--EEEEEEET--TTEEEEETTS--------E-EEEEEEEE---SSCSB---S-TT
T ss_pred             CHHHHHHHHHHHHhhcCccc--ccCCEEEEEEEec--cEEEEEEEec-------ce-eeeeeEEEeeeccCCCCcccccc
Confidence            89999999999999999874  9999999999987  4599999874       47 89999999999888999999999


Q ss_pred             ccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeee
Q 022090          159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV  222 (303)
Q Consensus       159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~  222 (303)
                       ..+       ...+|+.++.+...+++++|+|||+|.||+|++..|++.|.+||+++|++.|+
T Consensus       148 -~~~-------~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~~  203 (203)
T PF13738_consen  148 -SAF-------RPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIWY  203 (203)
T ss_dssp             -GGC-------SEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS----
T ss_pred             -ccc-------cceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCCC
Confidence             222       36789999988888899999999999999999999999999999999999663

...

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.92  E-value=6.4e-24  Score=184.21  Aligned_cols=174  Identities=25%  Similarity=0.383  Sum_probs=134.5

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   87 (303)
                      +||+|||||++|+++|..|++.|.+|+|||+++ .||.|....          .+..++.+      +...+..++..++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~~------~~~~~~~~~~~~l   63 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPGF------PEGISGPELMEKM   63 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCCC------CCCCChHHHHHHH
Confidence            589999999999999999999999999999987 566554210          01111111      1223456888999


Q ss_pred             HHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCCC
Q 022090           88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSAT  167 (303)
Q Consensus        88 ~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~~  167 (303)
                      .++++++++..  ++ ++|++++..+  +.|.|.+.++       .+ +.||+||+|||  +.|..|.+||.+.+     
T Consensus        64 ~~~~~~~gv~~--~~-~~v~~v~~~~--~~~~v~~~~~-------~~-~~~d~liiAtG--~~~~~~~i~g~~~~-----  123 (300)
T TIGR01292        64 KEQAVKFGAEI--IY-EEVIKVDLSD--RPFKVKTGDG-------KE-YTAKAVIIATG--ASARKLGIPGEDEF-----  123 (300)
T ss_pred             HHHHHHcCCeE--EE-EEEEEEEecC--CeeEEEeCCC-------CE-EEeCEEEECCC--CCcccCCCCChhhc-----
Confidence            99999998765  66 8899988765  5688877653       46 89999999999  67778889987766     


Q ss_pred             CCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          168 GTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       168 ~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                       .+..++...........+++++|||+|.+|+|+|..|++.+.+|++++|.+
T Consensus       124 -~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~  174 (300)
T TIGR01292       124 -LGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD  174 (300)
T ss_pred             -CCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence             555455444444445568999999999999999999999999999999987

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.92  E-value=2.7e-25  Score=199.39  Aligned_cols=275  Identities=18%  Similarity=0.176  Sum_probs=166.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC-ccCcCCCCceEEecCcccc-cCCCCC--CCCCCCC-CCCH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFC-QLPHLP--FPSSYPM-FVSR   80 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg-~w~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~-~~~~   80 (303)
                      ..||++|||+|++|..+|.++++.|.+|.++|+...+|| |.+..|.|+..+....... .+....  +-..... -.+.
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~   82 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF   82 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence            469999999999999999999999999999999966666 5566676665443332221 111110  0000011 2345


Q ss_pred             HHHHHHHHHHHHHcCCCceeEeCe-EEEEEEEeCC-CCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCC
Q 022090           81 AQFIEHLDHYVSHFNIGPSIRYQR-SVESASYDEA-TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG  158 (303)
Q Consensus        81 ~~l~~~l~~~~~~~~l~~~i~~~~-~V~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g  158 (303)
                      .+++++.+...+.......-.+.. .|+-+.-... .+..+|.+... +.    ++ ++++++|+|||  |+|..|++++
T Consensus        83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~-~~----~~-~~a~~iiIATG--S~p~~~~~~~  154 (454)
T COG1249          83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGE-DK----ET-ITADNIIIATG--SRPRIPPGPG  154 (454)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCC-Cc----eE-EEeCEEEEcCC--CCCcCCCCCC
Confidence            555555555332221110001111 1222211000 01234544432 11    57 89999999999  9999999888


Q ss_pred             ccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHHhhC
Q 022090          159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYV  238 (303)
Q Consensus       159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~~~l  238 (303)
                      .+..        .++.+.+..... ..|++++|||+|.+|+|+|..++++|.+||+++|.+ ++||.++.+++..+.+.|
T Consensus       155 ~~~~--------~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~-~iLp~~D~ei~~~~~~~l  224 (454)
T COG1249         155 IDGA--------RILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGD-RILPGEDPEISKELTKQL  224 (454)
T ss_pred             CCCC--------eEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCCcCCHHHHHHHHHHH
Confidence            7653        345555544434 679999999999999999999999999999999999 999999999988877766


Q ss_pred             CHHHHHHHHHHHHHHHhcCccccCCCCCCCC-----ccceeccCCCceEEecchhccc-----ccceEEE
Q 022090          239 PFGWVDTLMVMLSRLVYGDLSKYGIPKPREG-----PFFMKAAYGKYPVIDAGTCEKI-----KSGQIQN  298 (303)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i-----~~g~i~~  298 (303)
                      .+..++...+..............+......     .-.+..+.|+.|.++..-++++     ..|.|+|
T Consensus       225 ~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~V  294 (454)
T COG1249         225 EKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKV  294 (454)
T ss_pred             HhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEe
Confidence            5543443333322222111100111100100     1133457788888886655542     2366665

>PRK10262 thioredoxin reductase; Provisional

Probab=99.92  E-value=2.2e-23  Score=182.59  Aligned_cols=177  Identities=18%  Similarity=0.305  Sum_probs=136.4

Q ss_pred             CCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHH
Q 022090            4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (303)
Q Consensus         4 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (303)
                      +...+||+||||||+|+++|..|+++|+++++||+. ..||.+....          ....++.      .+...+..++
T Consensus         3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~----------~~~~~~~------~~~~~~~~~~   65 (321)
T PRK10262          3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTT----------EVENWPG------DPNDLTGPLL   65 (321)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCc----------eECCCCC------CCCCCCHHHH
Confidence            346789999999999999999999999999999965 4666543210          0111111      1223456788


Q ss_pred             HHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022090           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (303)
Q Consensus        84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~  163 (303)
                      .+++.+++..++.+.  +++ +|++++..+  +.|++....        .. +.||+||+|||  +.|+.|++||.+.| 
T Consensus        66 ~~~~~~~~~~~~~~~--~~~-~v~~v~~~~--~~~~v~~~~--------~~-~~~d~vilAtG--~~~~~~~i~g~~~~-  128 (321)
T PRK10262         66 MERMHEHATKFETEI--IFD-HINKVDLQN--RPFRLTGDS--------GE-YTCDALIIATG--ASARYLGLPSEEAF-  128 (321)
T ss_pred             HHHHHHHHHHCCCEE--Eee-EEEEEEecC--CeEEEEecC--------CE-EEECEEEECCC--CCCCCCCCCCHHHc-
Confidence            899999998887643  443 567777654  567776532        36 79999999999  77888999998777 


Q ss_pred             cCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          164 SSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       164 ~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                           .+..+|.+.+.+.....+++++|||+|.+|+|+|..|++.+.+||+++|++
T Consensus       129 -----~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~  179 (321)
T PRK10262        129 -----KGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  179 (321)
T ss_pred             -----CCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence                 677677777766566678999999999999999999999999999999987

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=5.6e-23  Score=176.09  Aligned_cols=173  Identities=24%  Similarity=0.386  Sum_probs=135.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCC-eEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .+||+||||||+||+||..+.+.+.+ ++|+|+.. .||.....      .    ..-.++.      ++.-.+..++++
T Consensus         3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~-~gg~~~~~------~----~venypg------~~~~~~g~~L~~   65 (305)
T COG0492           3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE-PGGQLTKT------T----DVENYPG------FPGGILGPELME   65 (305)
T ss_pred             eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC-cCCccccc------e----eecCCCC------CccCCchHHHHH
Confidence            58999999999999999999999998 56665543 44332111      0    0001111      123345778999


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      .+.+++..++.+.  .. ..|.+++...  +.|.|.+.+        .+ ++++.||+|||  ..++.|.+||.+.|   
T Consensus        66 ~~~~~a~~~~~~~--~~-~~v~~v~~~~--~~F~v~t~~--------~~-~~ak~vIiAtG--~~~~~~~~~~e~e~---  126 (305)
T COG0492          66 QMKEQAEKFGVEI--VE-DEVEKVELEG--GPFKVKTDK--------GT-YEAKAVIIATG--AGARKLGVPGEEEF---  126 (305)
T ss_pred             HHHHHHhhcCeEE--EE-EEEEEEeecC--ceEEEEECC--------Ce-EEEeEEEECcC--CcccCCCCCcchhh---
Confidence            9999999888764  33 6677776654  278888877        46 89999999999  66778888887778   


Q ss_pred             CCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                         .|+.+|++..++. .+++++|+|||+|.+|+|-|..|.+.+.+||+++|++
T Consensus       127 ---~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~  176 (305)
T COG0492         127 ---EGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRD  176 (305)
T ss_pred             ---cCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCc
Confidence               8888999999887 8899999999999999999999999999999999999

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.91  E-value=7.1e-23  Score=189.89  Aligned_cols=175  Identities=19%  Similarity=0.274  Sum_probs=140.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..+||+|||||++|+++|..|++.|++++++++.  +||.|... +            .+..++   . ..+..+.++.+
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~-~------------~~~~~~---~-~~~~~~~~l~~  270 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDT-M------------GIENFI---S-VPETEGPKLAA  270 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeecc-C------------cccccC---C-CCCCCHHHHHH
Confidence            4689999999999999999999999999999864  78887531 1            011111   0 11346778999


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      ++.+.++++++..  +++++|++++..+  +.|.|.+.++       .. +.|+.||+|||  +.|+.|++||.+.|   
T Consensus       271 ~l~~~~~~~gv~i--~~~~~V~~I~~~~--~~~~V~~~~g-------~~-i~a~~vViAtG--~~~r~~~ipG~~~~---  333 (517)
T PRK15317        271 ALEEHVKEYDVDI--MNLQRASKLEPAA--GLIEVELANG-------AV-LKAKTVILATG--ARWRNMNVPGEDEY---  333 (517)
T ss_pred             HHHHHHHHCCCEE--EcCCEEEEEEecC--CeEEEEECCC-------CE-EEcCEEEECCC--CCcCCCCCCCHHHh---
Confidence            9999999998766  8899999998865  6788887654       46 89999999999  56777889998777   


Q ss_pred             CCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                         .+..+++....+.....+++|+|||+|++|+|+|..|+..+.+||++++.+
T Consensus       334 ---~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~  384 (517)
T PRK15317        334 ---RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP  384 (517)
T ss_pred             ---cCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence               676666665555455678999999999999999999999999999999987

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.90  E-value=1.1e-22  Score=186.78  Aligned_cols=208  Identities=15%  Similarity=0.169  Sum_probs=132.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecCc-ccccCCCCC-C-CCCCCCCCCHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAK-QFCQLPHLP-F-PSSYPMFVSRA   81 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~   81 (303)
                      .++||+|||||++|+++|..|++.|.+|++||+++.+||+|.+ .+.++..+.... .+..+...+ + ....+...+..
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA   83 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence            4689999999999999999999999999999998888887643 444432211110 000000000 0 00011223445


Q ss_pred             HHHHHHHH-----------HHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           82 QFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        82 ~l~~~l~~-----------~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      ++.++.+.           ..++.+++.  +.+ ++..++    ...+.|...++     +... +.||+||+|||  +.
T Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~~~----~~~~~v~~~~g-----~~~~-~~~d~lviATG--s~  148 (461)
T PRK05249         84 DLLARADHVINKQVEVRRGQYERNRVDL--IQG-RARFVD----PHTVEVECPDG-----EVET-LTADKIVIATG--SR  148 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEE--EEE-EEEEec----CCEEEEEeCCC-----ceEE-EEcCEEEEcCC--CC
Confidence            55544333           333444432  332 233332    23466665443     2247 89999999999  77


Q ss_pred             CCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHH
Q 022090          151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL  230 (303)
Q Consensus       151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~  230 (303)
                      |..|++++.+..        .++++.+... ....+++++|||+|.+|+|+|..+++.|.+||++++++ +++|..+.++
T Consensus       149 p~~p~~~~~~~~--------~v~~~~~~~~-~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~  218 (461)
T PRK05249        149 PYRPPDVDFDHP--------RIYDSDSILS-LDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD-RLLSFLDDEI  218 (461)
T ss_pred             CCCCCCCCCCCC--------eEEcHHHhhc-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCCcCCHHH
Confidence            888876654321        2344443333 23457999999999999999999999999999999998 7888776666


Q ss_pred             HHHHHhhC
Q 022090          231 GVVLFKYV  238 (303)
Q Consensus       231 ~~~~~~~l  238 (303)
                      ...+.+.+
T Consensus       219 ~~~l~~~l  226 (461)
T PRK05249        219 SDALSYHL  226 (461)
T ss_pred             HHHHHHHH
Confidence            65554443

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.90  E-value=3.8e-22  Score=186.20  Aligned_cols=173  Identities=20%  Similarity=0.380  Sum_probs=133.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .+||+|||||+||+++|..|++.|++|+|||++ ..||.+... +         ....++.       ....+..++.++
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~-~---------~i~~~pg-------~~~~~~~~l~~~   65 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITIT-S---------EVVNYPG-------ILNTTGPELMQE   65 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEec-c---------ccccCCC-------CcCCCHHHHHHH
Confidence            589999999999999999999999999999996 467654321 0         0000111       012345688899


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~  166 (303)
                      +.+.+++++++.   .+++|++++.++  ..+.|...+        .. +.+++||+|||  +.|+.|++||.+.+    
T Consensus        66 l~~~~~~~gv~~---~~~~V~~i~~~~--~~~~V~~~~--------g~-~~a~~lVlATG--a~p~~~~ipG~~~~----  125 (555)
T TIGR03143        66 MRQQAQDFGVKF---LQAEVLDVDFDG--DIKTIKTAR--------GD-YKTLAVLIATG--ASPRKLGFPGEEEF----  125 (555)
T ss_pred             HHHHHHHcCCEE---eccEEEEEEecC--CEEEEEecC--------CE-EEEeEEEECCC--CccCCCCCCCHHHh----
Confidence            999888888763   477888887654  456676644        35 78899999999  67888999998766    


Q ss_pred             CCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       167 ~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                        .+..++.+...+.....+++++|||+|.+|+|+|..|++.|.+||+++|.+
T Consensus       126 --~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~  176 (555)
T TIGR03143       126 --TGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP  176 (555)
T ss_pred             --CCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence              565566555544445678999999999999999999999999999999988

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.89  E-value=5.3e-23  Score=187.61  Aligned_cols=205  Identities=16%  Similarity=0.205  Sum_probs=128.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCCceEEecCcccc----cCCCCCCCCCCCCCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~   81 (303)
                      .+||+|||||++|+++|..|++.|.+|+|+|++. +||++ +..|.|+..+.......    ....+..+.......+..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP   80 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence            5899999999999999999999999999999964 67754 45555553222111110    011111111101112333


Q ss_pred             HHHHHHH-----------HHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           82 QFIEHLD-----------HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        82 ~l~~~l~-----------~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      ++.++..           ..++..+++.  +.++.+.    .+   ..+|....        .. +.||+||+|||  +.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g~~~~----~~---~~~v~v~~--------~~-~~~d~vIiAtG--s~  140 (450)
T TIGR01421        81 ELKEKRDAYVDRLNGIYQKNLEKNKVDV--IFGHARF----TK---DGTVEVNG--------RD-YTAPHILIATG--GK  140 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEEEEE----cc---CCEEEECC--------EE-EEeCEEEEecC--CC
Confidence            4444332           2233334433  4443221    11   12344422        56 89999999999  78


Q ss_pred             CCCC-CCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHH
Q 022090          151 PFTP-DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (303)
Q Consensus       151 p~~p-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~  229 (303)
                      |..| ++||.+..          .++.++.. ....+++++|||+|.+|+|+|..|++.|.+||+++|.+ .+++..+..
T Consensus       141 p~~p~~i~g~~~~----------~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~il~~~d~~  208 (450)
T TIGR01421       141 PSFPENIPGAELG----------TDSDGFFA-LEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE-RVLRSFDSM  208 (450)
T ss_pred             CCCCCCCCCCcee----------EcHHHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCcccCHH
Confidence            8888 78886532          22222222 22247899999999999999999999999999999998 777877766


Q ss_pred             HHHHHHhhCCHHHHH
Q 022090          230 LGVVLFKYVPFGWVD  244 (303)
Q Consensus       230 ~~~~~~~~l~~~~~~  244 (303)
                      ++..+.+.|....++
T Consensus       209 ~~~~~~~~l~~~gI~  223 (450)
T TIGR01421       209 ISETITEEYEKEGIN  223 (450)
T ss_pred             HHHHHHHHHHHcCCE
Confidence            666665555444443

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.89  E-value=1.9e-22  Score=176.38  Aligned_cols=205  Identities=27%  Similarity=0.376  Sum_probs=127.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC-CCeEEEecCCCCCCccCcCC-CCceEEecC--cccccCCCCCCCCC---------
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKKYS-YDRLRLHLA--KQFCQLPHLPFPSS---------   73 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~~~gg~w~~~~-~~~~~~~~~--~~~~~~~~~~~~~~---------   73 (303)
                      .+|+++||.||++|++|..|.+.+ .++..+|+.+..  .|+..+ .++..+..+  +.+..+.+..-+..         
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~   79 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG   79 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence            479999999999999999999986 899999998764  477543 233332222  11111111111111         


Q ss_pred             --------CCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCC--CeEEEEEeecCCCCceeEEEEeeCEEEE
Q 022090           74 --------YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT--NMWNVKASNLLSPGREIEEYYSGRFLVV  143 (303)
Q Consensus        74 --------~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~--~~~~v~~~~~~~~~~~~~~~~~ad~vIl  143 (303)
                              -..+|++.++.+|+++.+++++...  +++++|++|++....  ..|.|.+.+..+   ...+ +.|+.||+
T Consensus        80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v--~~~~~V~~I~~~~~~~~~~~~V~~~~~~g---~~~~-~~ar~vVl  153 (341)
T PF13434_consen   80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQV--RYGSEVTSIEPDDDGDEDLFRVTTRDSDG---DGET-YRARNVVL  153 (341)
T ss_dssp             -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTE--EESEEEEEEEEEEETTEEEEEEEEEETTS----EEE-EEESEEEE
T ss_pred             ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCce--EECCEEEEEEEecCCCccEEEEEEeecCC---CeeE-EEeCeEEE
Confidence                    0145789999999999999998545  999999999987744  358998865222   2367 89999999


Q ss_pred             ccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCC--CCCCCeEEEECCCccHHHHHHHHhhccC--ceEEEeecC
Q 022090          144 ASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGK--PYGGKNVLVVGSGNSGMEIALDLANHAA--KTSLVVRSP  219 (303)
Q Consensus       144 AtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~v~ViG~G~~g~e~a~~l~~~g~--~vt~~~r~~  219 (303)
                      |+|  ..|.+|........      ...++|+.++....  ...+++|+|||||.||+|++..|.+.+.  +|+++.|++
T Consensus       154 a~G--~~P~iP~~~~~~~~------~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~  225 (341)
T PF13434_consen  154 ATG--GQPRIPEWFQDLPG------SPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP  225 (341)
T ss_dssp             ------EE---GGGGGGTT-------TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred             CcC--CCCCCCcchhhcCC------CCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence            999  88888864221111      35689999886532  5567999999999999999999999975  799999999


Q ss_pred             eeeeehhhH
Q 022090          220 VHVLSREMV  228 (303)
Q Consensus       220 ~~~lp~~~~  228 (303)
                       .+.|.++.
T Consensus       226 -~~~~~d~s  233 (341)
T PF13434_consen  226 -GFFPMDDS  233 (341)
T ss_dssp             -S-EB----
T ss_pred             -ccCCCccc
Confidence             77776654

>PRK14694 putative mercuric reductase; Provisional

Probab=99.89  E-value=2.1e-22  Score=184.82  Aligned_cols=209  Identities=16%  Similarity=0.203  Sum_probs=133.6

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecCccccc-CCCCCCCCCC---CCCCC
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ-LPHLPFPSSY---PMFVS   79 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~   79 (303)
                      ..++||+|||||++|+++|..|++.|.+|+|||++ .+||+|.+ .|.|+..+........ ....++....   ..-.+
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~   82 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVD   82 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccC
Confidence            46799999999999999999999999999999997 57887754 3333222111111000 0001100000   11235


Q ss_pred             HHHHHHHHHHHHHHcC-------C----CceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090           80 RAQFIEHLDHYVSHFN-------I----GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (303)
Q Consensus        80 ~~~l~~~l~~~~~~~~-------l----~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~  148 (303)
                      +.++.++..+.+..+.       +    .+. ....+++.++.    ..|.|.+.++     +..+ ++||+||+|||  
T Consensus        83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~-~~~g~v~~id~----~~~~V~~~~g-----~~~~-~~~d~lViATG--  149 (468)
T PRK14694         83 RSALLAQQQARVEELRESKYQSILRENAAIT-VLNGEARFVDE----RTLTVTLNDG-----GEQT-VHFDRAFIGTG--  149 (468)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHhcCCCeE-EEEEEEEEecC----CEEEEEecCC-----CeEE-EECCEEEEeCC--
Confidence            5666666555443221       0    111 22234555532    4588887664     2247 89999999999  


Q ss_pred             CCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH
Q 022090          149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       149 ~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~  228 (303)
                      +.|..|++||.+..        .++++.+... ....+++++|||+|.+|+|+|..|++.|.+||++.+.  .++|..+.
T Consensus       150 s~p~~p~i~G~~~~--------~~~~~~~~~~-l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~--~~l~~~~~  218 (468)
T PRK14694        150 ARPAEPPVPGLAET--------PYLTSTSALE-LDHIPERLLVIGASVVALELAQAFARLGSRVTVLARS--RVLSQEDP  218 (468)
T ss_pred             CCCCCCCCCCCCCC--------ceEcchhhhc-hhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC--CCCCCCCH
Confidence            78889999997643        2344333222 2234789999999999999999999999999999863  57776655


Q ss_pred             HHHHHHHhhC
Q 022090          229 YLGVVLFKYV  238 (303)
Q Consensus       229 ~~~~~~~~~l  238 (303)
                      +++..+.+.|
T Consensus       219 ~~~~~l~~~l  228 (468)
T PRK14694        219 AVGEAIEAAF  228 (468)
T ss_pred             HHHHHHHHHH
Confidence            5555554444

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.89  E-value=1.3e-21  Score=181.20  Aligned_cols=175  Identities=19%  Similarity=0.294  Sum_probs=133.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..+||+|||||++|+++|..|++.|.+|+|++.  .+||.+... . .        +..+...       ......++.+
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~-~-~--------~~~~~~~-------~~~~~~~l~~  271 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDT-V-G--------IENLISV-------PYTTGSQLAA  271 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccC-c-C--------ccccccc-------CCCCHHHHHH
Confidence            468999999999999999999999999999975  478876431 0 0        0001111       1134668888


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      ++.+++++++++.  +.+++|++++..+  +.+.+.+.++       .. +.||+||+|||  +.|+.|++||.+.+   
T Consensus       272 ~l~~~l~~~gv~i--~~~~~V~~I~~~~--~~~~v~~~~g-------~~-i~~d~lIlAtG--a~~~~~~ipG~~~~---  334 (515)
T TIGR03140       272 NLEEHIKQYPIDL--MENQRAKKIETED--GLIVVTLESG-------EV-LKAKSVIVATG--ARWRKLGVPGEKEY---  334 (515)
T ss_pred             HHHHHHHHhCCeE--EcCCEEEEEEecC--CeEEEEECCC-------CE-EEeCEEEECCC--CCcCCCCCCCHHHc---
Confidence            9999888888766  8889999998754  5677777653       46 89999999999  66777889987655   


Q ss_pred             CCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                         .+..++...........+++++|||+|++|+|+|..|++.+.+||++++.+
T Consensus       335 ---~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~  385 (515)
T TIGR03140       335 ---IGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD  385 (515)
T ss_pred             ---CCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence               444444443333334568999999999999999999999999999999887

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK14727 putative mercuric reductase; Provisional

Probab=99.89  E-value=2.5e-22  Score=184.70  Aligned_cols=221  Identities=19%  Similarity=0.190  Sum_probs=134.0

Q ss_pred             CCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecCcccc----cCCCCCCCCCCCC
Q 022090            2 KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFC----QLPHLPFPSSYPM   76 (303)
Q Consensus         2 ~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~   76 (303)
                      ...+.++||+|||+|++|+++|..|+++|.+|+++|+++.+||+|.+ .|.|+..+..+....    ..+.+.++...+ 
T Consensus        11 ~~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~-   89 (479)
T PRK14727         11 TRSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAP-   89 (479)
T ss_pred             ccCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCC-
Confidence            33445799999999999999999999999999999998889998864 345544322221111    111111111111 


Q ss_pred             CCCHHHHHHHHHHHHHHcC---CCceeEeCeEEEE----EEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           77 FVSRAQFIEHLDHYVSHFN---IGPSIRYQRSVES----ASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        77 ~~~~~~l~~~l~~~~~~~~---l~~~i~~~~~V~~----i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      -.+...+..+.........   ....+..+..|+-    ....+ ...+.|...++     +..+ +.||+||+|||  +
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~-~~~v~v~~~~g-----~~~~-~~~d~lViATG--s  160 (479)
T PRK14727         90 SIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKD-GNTLVVRLHDG-----GERV-LAADRCLIATG--S  160 (479)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEec-CCEEEEEeCCC-----ceEE-EEeCEEEEecC--C
Confidence            1234444443333322210   0000000001111    11222 24566665443     2247 89999999999  7


Q ss_pred             CCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHH
Q 022090          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (303)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~  229 (303)
                      .|..|++||.+..        ...++.+... ....+++++|||+|.+|+|+|..+.+.|.+||++++.  .+++..+..
T Consensus       161 ~p~~p~i~G~~~~--------~~~~~~~~l~-~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~--~~l~~~d~~  229 (479)
T PRK14727        161 TPTIPPIPGLMDT--------PYWTSTEALF-SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS--TLLFREDPL  229 (479)
T ss_pred             CCCCCCCCCcCcc--------ceecchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC--CCCCcchHH
Confidence            8899999987532        1222222222 2234689999999999999999999999999999874  577776666


Q ss_pred             HHHHHHhhCCHHHH
Q 022090          230 LGVVLFKYVPFGWV  243 (303)
Q Consensus       230 ~~~~~~~~l~~~~~  243 (303)
                      ++..+.+.|....+
T Consensus       230 ~~~~l~~~L~~~GV  243 (479)
T PRK14727        230 LGETLTACFEKEGI  243 (479)
T ss_pred             HHHHHHHHHHhCCC
Confidence            66555554443333

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.89  E-value=2.3e-22  Score=184.49  Aligned_cols=209  Identities=15%  Similarity=0.097  Sum_probs=130.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCCceEEecCccc-c---cCCCCCCCCCCCCCCCH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQF-C---QLPHLPFPSSYPMFVSR   80 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~   80 (303)
                      .++||+|||||++|+.+|..|++.|.+|+|+|+.+.+||+| +..|+|+..+...... .   ....+..... ....+.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~   81 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG-EPKIDI   81 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC-CCCcCH
Confidence            35899999999999999999999999999999987778854 5556665332111100 0   0011100000 112344


Q ss_pred             HHHHHHHHHHH-----------HHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           81 AQFIEHLDHYV-----------SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        81 ~~l~~~l~~~~-----------~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      ..+.++....+           +..+++.  +. ..+..++    .....|...++     +..+ +.||+||+|||  +
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~gV~~--~~-g~a~~~~----~~~v~v~~~~g-----~~~~-~~~d~lViATG--s  146 (471)
T PRK06467         82 DKMRARKEKVVKQLTGGLAGMAKGRKVTV--VN-GLGKFTG----GNTLEVTGEDG-----KTTV-IEFDNAIIAAG--S  146 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EE-EEEEEcc----CCEEEEecCCC-----ceEE-EEcCEEEEeCC--C
Confidence            45555444332           2334432  22 2233221    13344443332     2257 89999999999  6


Q ss_pred             CCCC-CCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH
Q 022090          150 NPFT-PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       150 ~p~~-p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~  228 (303)
                      .|.. |.+++...         .++.+.+... ....+++++|||+|.+|+|+|..+++.|.+||++++.+ .++|..+.
T Consensus       147 ~p~~~p~~~~~~~---------~v~~~~~~~~-~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~il~~~d~  215 (471)
T PRK06467        147 RPIQLPFIPHDDP---------RIWDSTDALE-LKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD-QVIPAADK  215 (471)
T ss_pred             CCCCCCCCCCCCC---------cEEChHHhhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCCcCCH
Confidence            7753 44444221         2343333333 22346899999999999999999999999999999998 88888777


Q ss_pred             HHHHHHHhhCCHH
Q 022090          229 YLGVVLFKYVPFG  241 (303)
Q Consensus       229 ~~~~~~~~~l~~~  241 (303)
                      .++..+.+.|...
T Consensus       216 ~~~~~~~~~l~~~  228 (471)
T PRK06467        216 DIVKVFTKRIKKQ  228 (471)
T ss_pred             HHHHHHHHHHhhc
Confidence            7776666655443

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.89  E-value=3.5e-22  Score=183.35  Aligned_cols=202  Identities=18%  Similarity=0.222  Sum_probs=127.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCCceEEecCccccc----CCCCCCCCCCCCCCCH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSR   80 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~   80 (303)
                      ..+||+|||||++|+++|..|+++|.+|+|+|+.. +||.| +..+.|+..+........    +..+.+... ....++
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~   80 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDF   80 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCH
Confidence            46899999999999999999999999999999987 77754 556666543222111111    011111100 112355


Q ss_pred             HHHHHHHHHH-----------HHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           81 AQFIEHLDHY-----------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        81 ~~l~~~l~~~-----------~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      .++.+|.++.           .++.+++.  +.+ +++.++.    ..+.|...++     . .. +.||+||+|||  +
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g-~~~~~~~----~~~~v~~~~~-----~-~~-~~~d~lViAtG--s  144 (462)
T PRK06416         81 KKVQEWKNGVVNRLTGGVEGLLKKNKVDI--IRG-EAKLVDP----NTVRVMTEDG-----E-QT-YTAKNIILATG--S  144 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEccC----CEEEEecCCC-----c-EE-EEeCEEEEeCC--C
Confidence            6666664443           33344432  333 3333321    2344543221     1 56 89999999999  6


Q ss_pred             CCCCCCCCCccccccCCCCCcc-EEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH
Q 022090          150 NPFTPDIRGLCSFCSSATGTGE-VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~  228 (303)
                      .|..|  ||.+.       .+. ++++.+... ....+++++|||+|.+|+|+|..|.+.|.+||+++|.+ +++|..+.
T Consensus       145 ~p~~~--pg~~~-------~~~~v~~~~~~~~-~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~  213 (462)
T PRK06416        145 RPREL--PGIEI-------DGRVIWTSDEALN-LDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP-RILPGEDK  213 (462)
T ss_pred             CCCCC--CCCCC-------CCCeEEcchHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CcCCcCCH
Confidence            66543  45432       332 333333322 23457899999999999999999999999999999998 78887665


Q ss_pred             HHHHHHHh
Q 022090          229 YLGVVLFK  236 (303)
Q Consensus       229 ~~~~~~~~  236 (303)
                      ++...+.+
T Consensus       214 ~~~~~l~~  221 (462)
T PRK06416        214 EISKLAER  221 (462)
T ss_pred             HHHHHHHH
Confidence            55554444

>PRK06370 mercuric reductase; Validated

Probab=99.88  E-value=2.8e-22  Score=183.98  Aligned_cols=203  Identities=14%  Similarity=0.174  Sum_probs=127.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCccccc----CCCCCCCCCCCCCCCHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRA   81 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   81 (303)
                      .++||+|||||++|+++|..|++.|.+|+|+|+....|++.+..|.|+..+........    ...+.++.......+..
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   83 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK   83 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence            45999999999999999999999999999999975444344444444322111100000    00111110000123444


Q ss_pred             HHHHHHHHHH-----------HHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           82 QFIEHLDHYV-----------SHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        82 ~l~~~l~~~~-----------~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      .+.++....+           ++. +++.  +.++.+. +      +..+|...+        .+ +.||+||+|||  +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~v--~~g~~~~-~------~~~~v~v~~--------~~-~~~d~lViATG--s  143 (463)
T PRK06370         84 AVMARKRRIRARSRHGSEQWLRGLEGVDV--FRGHARF-E------SPNTVRVGG--------ET-LRAKRIFINTG--A  143 (463)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhcCCCcEE--EEEEEEE-c------cCCEEEECc--------EE-EEeCEEEEcCC--C
Confidence            5554443332           222 3332  4443321 1      113444432        56 89999999999  7


Q ss_pred             CCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHH
Q 022090          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (303)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~  229 (303)
                      .|..|++||.+..        .++++.+... ....+++++|||+|.+|+|+|..+++.|.+||++++.+ +++|..+.+
T Consensus       144 ~p~~p~i~G~~~~--------~~~~~~~~~~-~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~~~~  213 (463)
T PRK06370        144 RAAIPPIPGLDEV--------GYLTNETIFS-LDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP-RLLPREDED  213 (463)
T ss_pred             CCCCCCCCCCCcC--------ceEcchHhhC-ccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CCCcccCHH
Confidence            8899999997642        2344444433 22357999999999999999999999999999999998 788876655


Q ss_pred             HHHHHHhhC
Q 022090          230 LGVVLFKYV  238 (303)
Q Consensus       230 ~~~~~~~~l  238 (303)
                      +...+.+.|
T Consensus       214 ~~~~l~~~l  222 (463)
T PRK06370        214 VAAAVREIL  222 (463)
T ss_pred             HHHHHHHHH
Confidence            555444433

>PLN02507 glutathione reductase

Probab=99.88  E-value=3.4e-22  Score=184.12  Aligned_cols=207  Identities=15%  Similarity=0.121  Sum_probs=132.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEec---------CCCCCCcc-CcCCCCceEEecCcccc----cCCCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILER---------ENCYASIW-KKYSYDRLRLHLAKQFC----QLPHLPFPS   72 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~---------~~~~gg~w-~~~~~~~~~~~~~~~~~----~~~~~~~~~   72 (303)
                      +|||+|||||++|+.+|..|+++|.+|+|+|+         ...+||+| +..|+|+..+.....+.    ....+....
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~  104 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI  104 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence            58999999999999999999999999999996         34578865 55667655442221110    001111110


Q ss_pred             CCCCCCCHHHHHHHHHHHHH-----------HcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEE
Q 022090           73 SYPMFVSRAQFIEHLDHYVS-----------HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL  141 (303)
Q Consensus        73 ~~~~~~~~~~l~~~l~~~~~-----------~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v  141 (303)
                      ......+..++.+++...++           ..+++   ....++..++.    ..+.|...++     +..+ +.||+|
T Consensus       105 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~---~i~g~a~~vd~----~~v~V~~~~g-----~~~~-~~~d~L  171 (499)
T PLN02507        105 NEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK---LYEGEGKIVGP----NEVEVTQLDG-----TKLR-YTAKHI  171 (499)
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE---EEEEEEEEecC----CEEEEEeCCC-----cEEE-EEcCEE
Confidence            00012344455544433322           22332   22233444432    3466766543     2246 899999


Q ss_pred             EEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCee
Q 022090          142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH  221 (303)
Q Consensus       142 IlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~  221 (303)
                      |+|||  +.|..|.+||.+..          .++.+... ....+++++|||+|.+|+|+|..+.+.|.+||+++|.+ .
T Consensus       172 IIATG--s~p~~p~ipG~~~~----------~~~~~~~~-l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~  237 (499)
T PLN02507        172 LIATG--SRAQRPNIPGKELA----------ITSDEALS-LEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE-L  237 (499)
T ss_pred             EEecC--CCCCCCCCCCccce----------echHHhhh-hhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC-C
Confidence            99999  78888889886432          22222222 12347899999999999999999999999999999998 6


Q ss_pred             eeehhhHHHHHHHHhhCCH
Q 022090          222 VLSREMVYLGVVLFKYVPF  240 (303)
Q Consensus       222 ~lp~~~~~~~~~~~~~l~~  240 (303)
                      +++..+.++...+.+.|..
T Consensus       238 ~l~~~d~~~~~~l~~~l~~  256 (499)
T PLN02507        238 PLRGFDDEMRAVVARNLEG  256 (499)
T ss_pred             cCcccCHHHHHHHHHHHHh
Confidence            7777666666555554433

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.88  E-value=9.4e-22  Score=179.48  Aligned_cols=199  Identities=19%  Similarity=0.235  Sum_probs=127.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC-CCCCccCc-CCCCceEEecCcccccCCCCCCCCCCCC-CCCHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKK-YSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQF   83 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~-~~gg~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l   83 (303)
                      .+||+|||||++|+++|..|+++|.+|+|+|+.+ .+||+|.+ .+.+...+.....      .  ..++.. ....+.+
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~------~--~~~~~~~~~~~~~~   74 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ------Q--HTDFVRAIQRKNEV   74 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhc------c--CCCHHHHHHHHHHH
Confidence            4899999999999999999999999999999976 47887643 3333221100000      0  000000 0011222


Q ss_pred             HHHHHH-----HHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCC
Q 022090           84 IEHLDH-----YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG  158 (303)
Q Consensus        84 ~~~l~~-----~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g  158 (303)
                      .++++.     ..+..+++.  . ..++..++    .+.+.|...++     + .+ +.||+||+|||  +.|..|++||
T Consensus        75 ~~~~~~~~~~~~~~~~gv~~--~-~g~~~~i~----~~~~~v~~~~g-----~-~~-~~~d~lviATG--s~p~~p~i~G  138 (441)
T PRK08010         75 VNFLRNKNFHNLADMPNIDV--I-DGQAEFIN----NHSLRVHRPEG-----N-LE-IHGEKIFINTG--AQTVVPPIPG  138 (441)
T ss_pred             HHHHHHhHHHHHhhcCCcEE--E-EEEEEEec----CCEEEEEeCCC-----e-EE-EEeCEEEEcCC--CcCCCCCCCC
Confidence            233321     111113321  2 22344442    23466665442     1 46 89999999999  7888899999


Q ss_pred             ccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHHhhC
Q 022090          159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYV  238 (303)
Q Consensus       159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~~~l  238 (303)
                      .+.+      .+ ++++.+... ....+++++|||+|.+|+|+|..|.+.|.+||+++|++ .++|..+.++...+.+.|
T Consensus       139 ~~~~------~~-v~~~~~~~~-~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~l~~~l  209 (441)
T PRK08010        139 ITTT------PG-VYDSTGLLN-LKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS-LFLPREDRDIADNIATIL  209 (441)
T ss_pred             ccCC------CC-EEChhHhhc-ccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCCcCHHHHHHHHHHH
Confidence            8654      43 344443333 33457899999999999999999999999999999988 788877666655544443

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.88  E-value=4.5e-22  Score=166.28  Aligned_cols=229  Identities=17%  Similarity=0.163  Sum_probs=157.0

Q ss_pred             CCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCCceEEecCccc----ccCCCCCCCCCCCCC
Q 022090            3 EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQF----CQLPHLPFPSSYPMF   77 (303)
Q Consensus         3 ~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~   77 (303)
                      .....+|.++||||..|+++|+++++.|.++.++|..-.+||++ +..|.|...+-....+    ....++.|+.....-
T Consensus        16 ~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~   95 (478)
T KOG0405|consen   16 ADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS   95 (478)
T ss_pred             ccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence            33457999999999999999999999999999999987788755 4455555443322221    122233344433333


Q ss_pred             CCHHHHHHHHHHHHHHcC-CCceeEeCeEEEEEEEe---CCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           78 VSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYD---EATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        78 ~~~~~l~~~l~~~~~~~~-l~~~i~~~~~V~~i~~~---~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      .+|..+.+.-..++.+++ +-.....+..|.-++-.   ...+...|...++     .... |+++++++|||  ++|.+
T Consensus        96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~-----~~~~-Ytak~iLIAtG--g~p~~  167 (478)
T KOG0405|consen   96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDG-----TKIV-YTAKHILIATG--GRPII  167 (478)
T ss_pred             CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCC-----eeEE-EecceEEEEeC--CccCC
Confidence            456666666666665542 11111222233322211   1223455655554     2256 89999999999  99999


Q ss_pred             CCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHH
Q 022090          154 PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV  233 (303)
Q Consensus       154 p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~  233 (303)
                      |++||.+.-          +.+..+.+ ....|+|++|||+|++|+|+|..++.+|.+++++.|.+ .+|..++..++..
T Consensus       168 PnIpG~E~g----------idSDgff~-Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~-kvLR~FD~~i~~~  235 (478)
T KOG0405|consen  168 PNIPGAELG----------IDSDGFFD-LEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE-KVLRGFDEMISDL  235 (478)
T ss_pred             CCCCchhhc----------cccccccc-hhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecc-hhhcchhHHHHHH
Confidence            999997743          66666655 55678999999999999999999999999999999999 7888888877777


Q ss_pred             HHhhCCHHHHHHHHHHHH
Q 022090          234 LFKYVPFGWVDTLMVMLS  251 (303)
Q Consensus       234 ~~~~l~~~~~~~~~~~~~  251 (303)
                      +.+.|..+.++...++..
T Consensus       236 v~~~~~~~ginvh~~s~~  253 (478)
T KOG0405|consen  236 VTEHLEGRGINVHKNSSV  253 (478)
T ss_pred             HHHHhhhcceeecccccc
Confidence            777776666655444433

>TIGR02053 MerA mercuric reductase

Probab=99.87  E-value=2.7e-22  Score=184.16  Aligned_cols=207  Identities=17%  Similarity=0.207  Sum_probs=129.1

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC-cCCCCceEEecCcccccCCCC-CCCCC-CCCCCCHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQLPHL-PFPSS-YPMFVSRAQFI   84 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~-~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~l~   84 (303)
                      +||+||||||+|+++|..|+++|.+|+|+|++. +||+|. ..|.|+..+........+... .+... .....+...+.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   79 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL   79 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence            699999999999999999999999999999986 677654 344443322211111111000 00000 00112333333


Q ss_pred             HHHH------------HHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           85 EHLD------------HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        85 ~~l~------------~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      .+.+            ..+++++++.  ..+ ++..+      +..+|.+.++     + .. +.+|+||+|||  +.|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~~------~~~~v~v~~g-----~-~~-~~~~~lIiATG--s~p~  141 (463)
T TIGR02053        80 EGKREVVEELRHEKYEDVLSSYGVDY--LRG-RARFK------DPKTVKVDLG-----R-EV-RGAKRFLIATG--ARPA  141 (463)
T ss_pred             HHHHHHHHHHhhhhHHHHHHhCCcEE--EEE-EEEEc------cCCEEEEcCC-----e-EE-EEeCEEEEcCC--CCCC
Confidence            3322            2233444432  222 22221      1245555432     1 46 78999999999  7888


Q ss_pred             CCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHH
Q 022090          153 TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGV  232 (303)
Q Consensus       153 ~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~  232 (303)
                      .|++||.+.+        .++++.+... ....+++++|||+|.+|+|+|..|++.|.+||++++.+ .++|..+.++..
T Consensus       142 ~p~i~G~~~~--------~~~~~~~~~~-~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~  211 (463)
T TIGR02053       142 IPPIPGLKEA--------GYLTSEEALA-LDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD-RLLPREEPEISA  211 (463)
T ss_pred             CCCCCCcccC--------ceECchhhhC-cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-cCCCccCHHHHH
Confidence            9999997653        2344444333 22346899999999999999999999999999999998 788877666665


Q ss_pred             HHHhhCCHHHH
Q 022090          233 VLFKYVPFGWV  243 (303)
Q Consensus       233 ~~~~~l~~~~~  243 (303)
                      .+.+.|....+
T Consensus       212 ~l~~~l~~~gV  222 (463)
T TIGR02053       212 AVEEALAEEGI  222 (463)
T ss_pred             HHHHHHHHcCC
Confidence            55544433333

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.87  E-value=5.8e-22  Score=180.86  Aligned_cols=198  Identities=14%  Similarity=0.165  Sum_probs=125.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCCceEEecCccc----ccCCCCCCCCCCCCCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQF----CQLPHLPFPSSYPMFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   81 (303)
                      +|||+||||||+|+++|..++++|.+|+|+|+. .+||++ +..|.|+..+......    ..++.+..... ..-.+..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~   79 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG-KARFDWK   79 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC-CCCcCHH
Confidence            589999999999999999999999999999995 577754 4455555432111111    01111111000 0012222


Q ss_pred             H-----------HHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           82 Q-----------FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        82 ~-----------l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      .           +.++++..++..+++.  . ..++..++..    ...+. .++       .. +.||+||+|||  +.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~--~-~g~~~~v~~~----~v~v~-~~g-------~~-~~~d~lIiATG--s~  141 (446)
T TIGR01424        80 KLLQKKDDEIARLSGLYKRLLANAGVEL--L-EGRARLVGPN----TVEVL-QDG-------TT-YTAKKILIAVG--GR  141 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcEE--E-EEEEEEecCC----EEEEe-cCC-------eE-EEcCEEEEecC--Cc
Confidence            2           2333344444555543  3 2355555322    23332 121       56 89999999999  88


Q ss_pred             CCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHH
Q 022090          151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL  230 (303)
Q Consensus       151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~  230 (303)
                      |..|++||.+..          +.+.+... ....+++++|||+|.+|+|+|..+++.|.+|+++++.+ .++|..+.++
T Consensus       142 p~~p~i~G~~~~----------~~~~~~~~-l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~~~  209 (446)
T TIGR01424       142 PQKPNLPGHELG----------ITSNEAFH-LPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE-LILRGFDDDM  209 (446)
T ss_pred             CCCCCCCCccce----------echHHhhc-ccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC-CCCcccCHHH
Confidence            888889886532          22222221 12347899999999999999999999999999999998 6777665555


Q ss_pred             HHHHHh
Q 022090          231 GVVLFK  236 (303)
Q Consensus       231 ~~~~~~  236 (303)
                      ...+.+
T Consensus       210 ~~~l~~  215 (446)
T TIGR01424       210 RALLAR  215 (446)
T ss_pred             HHHHHH
Confidence            544443

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06116 glutathione reductase; Validated

Probab=99.87  E-value=1.2e-21  Score=179.24  Aligned_cols=198  Identities=21%  Similarity=0.227  Sum_probs=125.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCCceEEecCccccc-C----CCCCCCCCCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFCQ-L----PHLPFPSSYPMFVS   79 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~   79 (303)
                      ..+||+|||||++|+++|..|+++|.+|+|+|+. .+||+| +..|.|+..+........ +    +.+.+... ....+
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~   80 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVT-ENKFD   80 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCC-CCCcC
Confidence            3589999999999999999999999999999996 577755 444555432211111100 0    00000000 01123


Q ss_pred             HHHHHHHHH-----------HHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090           80 RAQFIEHLD-----------HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (303)
Q Consensus        80 ~~~l~~~l~-----------~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~  148 (303)
                      ...+.++..           +..+..+++.  +.+ +++.++      ..+|.+ ++       .+ +.||+||+|||  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~v~------~~~v~~-~g-------~~-~~~d~lViATG--  140 (450)
T PRK06116         81 WAKLIANRDAYIDRLHGSYRNGLENNGVDL--IEG-FARFVD------AHTVEV-NG-------ER-YTADHILIATG--  140 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEcc------CCEEEE-CC-------EE-EEeCEEEEecC--
Confidence            333333322           2233345443  333 344432      134555 32       57 89999999999  


Q ss_pred             CCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH
Q 022090          149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       149 ~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~  228 (303)
                      +.|..|++||.+..          +++.+... ....+++++|||+|.+|+|+|..|++.|.+||+++|.+ .+++..+.
T Consensus       141 s~p~~p~i~g~~~~----------~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~  208 (450)
T PRK06116        141 GRPSIPDIPGAEYG----------ITSDGFFA-LEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD-APLRGFDP  208 (450)
T ss_pred             CCCCCCCCCCccee----------EchhHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CCccccCH
Confidence            78888999886532          33333332 22346899999999999999999999999999999998 66776555


Q ss_pred             HHHHHHHhh
Q 022090          229 YLGVVLFKY  237 (303)
Q Consensus       229 ~~~~~~~~~  237 (303)
                      .+...+.+.
T Consensus       209 ~~~~~l~~~  217 (450)
T PRK06116        209 DIRETLVEE  217 (450)
T ss_pred             HHHHHHHHH
Confidence            555444443

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.87  E-value=3.2e-21  Score=175.86  Aligned_cols=191  Identities=17%  Similarity=0.167  Sum_probs=122.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC-CCCcc-CcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC-YASIW-KKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~-~gg~w-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      ++||+|||||++|+++|..|++.|.+|+|+|+++. +||++ +..+.|...+.....      .        ..+..++.
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~------~--------~~~~~~~~   68 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAE------K--------NLSFEQVM   68 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhh------c--------CCCHHHHH
Confidence            58999999999999999999999999999999864 57753 433333222111110      0        01222333


Q ss_pred             HHHH-----------HHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           85 EHLD-----------HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        85 ~~l~-----------~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      .+..           +.....+++.  ..+ +...+  +    ..+|....+.    +..+ +.||+||+|||  +.|+.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~gV~~--~~g-~~~~~--~----~~~v~v~~~~----~~~~-~~~d~vViATG--s~~~~  132 (438)
T PRK07251         69 ATKNTVTSRLRGKNYAMLAGSGVDL--YDA-EAHFV--S----NKVIEVQAGD----EKIE-LTAETIVINTG--AVSNV  132 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEc--c----CCEEEEeeCC----CcEE-EEcCEEEEeCC--CCCCC
Confidence            3222           2223333332  222 22111  1    1234443321    1156 89999999999  77888


Q ss_pred             CCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHH
Q 022090          154 PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV  233 (303)
Q Consensus       154 p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~  233 (303)
                      |++||.+..      . .++++.+... ....+++++|||+|.+|+|+|..+++.|.+||+++|++ +++|..+..+...
T Consensus       133 p~i~G~~~~------~-~v~~~~~~~~-~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~  203 (438)
T PRK07251        133 LPIPGLADS------K-HVYDSTGIQS-LETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS-TILPREEPSVAAL  203 (438)
T ss_pred             CCCCCcCCC------C-cEEchHHHhc-chhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-ccCCCCCHHHHHH
Confidence            999997543      2 2344443333 22357899999999999999999999999999999998 7888766555544


Q ss_pred             HHh
Q 022090          234 LFK  236 (303)
Q Consensus       234 ~~~  236 (303)
                      +.+
T Consensus       204 ~~~  206 (438)
T PRK07251        204 AKQ  206 (438)
T ss_pred             HHH
Confidence            443

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.87  E-value=1.4e-21  Score=179.59  Aligned_cols=211  Identities=19%  Similarity=0.199  Sum_probs=129.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecCccccc-C---CCCCCCCCCCCCCCH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ-L---PHLPFPSSYPMFVSR   80 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~   80 (303)
                      ..|||+|||||++|+++|..|+++|.+|+|+|+. .+||+|.+ .|.|+..+......+. .   ..+..... ....+.
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~   80 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVS-GPALDF   80 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCC-CCccCH
Confidence            3689999999999999999999999999999996 67887743 4444432211111100 0   00000000 001233


Q ss_pred             HHHHHH-------HH----HHHHHcCCCceeEeCeEEEEEEEe---CCCCeEEEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090           81 AQFIEH-------LD----HYVSHFNIGPSIRYQRSVESASYD---EATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (303)
Q Consensus        81 ~~l~~~-------l~----~~~~~~~l~~~i~~~~~V~~i~~~---~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG  146 (303)
                      ..+.++       +.    ...++.+++.   +...++.++..   +..+.+.|...++     +..+ +.||+||+|||
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~---~~g~a~~i~~~~~~~~~~~~~v~~~~g-----~~~~-~~~d~lViATG  151 (472)
T PRK05976         81 AKVQERKDGIVDRLTKGVAALLKKGKIDV---FHGIGRILGPSIFSPMPGTVSVETETG-----ENEM-IIPENLLIATG  151 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEE---EEEEEEEeCCCCCcCCceEEEEEeCCC-----ceEE-EEcCEEEEeCC
Confidence            333333       22    2233345442   33455555443   1123566766543     1257 89999999999


Q ss_pred             CCCCCCCCCCCCccccccCCCCCcc-EEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh
Q 022090          147 ETTNPFTPDIRGLCSFCSSATGTGE-VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (303)
Q Consensus       147 ~~~~p~~p~~~g~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~  225 (303)
                        +.|..+  |+.+ +      .+. ++++.+... ....+++++|||+|.+|+|+|..|++.|.+||+++|.+ +++|.
T Consensus       152 --s~p~~~--p~~~-~------~~~~~~~~~~~~~-~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~-~il~~  218 (472)
T PRK05976        152 --SRPVEL--PGLP-F------DGEYVISSDEALS-LETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD-RILPT  218 (472)
T ss_pred             --CCCCCC--CCCC-C------CCceEEcchHhhC-ccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-ccCCc
Confidence              666543  3322 1      222 344443332 22347899999999999999999999999999999998 78888


Q ss_pred             hhHHHHHHHHhhCCH
Q 022090          226 EMVYLGVVLFKYVPF  240 (303)
Q Consensus       226 ~~~~~~~~~~~~l~~  240 (303)
                      .+.+++..+.+.|..
T Consensus       219 ~~~~~~~~l~~~l~~  233 (472)
T PRK05976        219 EDAELSKEVARLLKK  233 (472)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            766666555544433

>PRK13748 putative mercuric reductase; Provisional

Probab=99.87  E-value=3.4e-21  Score=181.01  Aligned_cols=209  Identities=16%  Similarity=0.160  Sum_probs=131.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecCccccc-CCCCC----CCCCCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ-LPHLP----FPSSYPMFVS   79 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~   79 (303)
                      ..+||+|||||++|+++|..|+++|.+|+|||++ .+||+|.+ .|.|+..+........ ....+    ++.. .....
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~  174 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAAT-VPTID  174 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCC-CCccC
Confidence            3589999999999999999999999999999998 68887754 4555443221111100 00111    1111 11234


Q ss_pred             HHHHHHHHHHHHHHcCC-----------CceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090           80 RAQFIEHLDHYVSHFNI-----------GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (303)
Q Consensus        80 ~~~l~~~l~~~~~~~~l-----------~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~  148 (303)
                      ...+.++.........-           .+. .+..++..++    ...+.|...++     +..+ ++||+||+|||  
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~g~~~~~~----~~~~~v~~~~g-----~~~~-~~~d~lviAtG--  241 (561)
T PRK13748        175 RSRLLAQQQARVDELRHAKYEGILDGNPAIT-VLHGEARFKD----DQTLIVRLNDG-----GERV-VAFDRCLIATG--  241 (561)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHhccCCeE-EEEEEEEEec----CCEEEEEeCCC-----ceEE-EEcCEEEEcCC--
Confidence            55666555443332110           111 1222333332    23466665443     2247 89999999999  


Q ss_pred             CCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH
Q 022090          149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       149 ~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~  228 (303)
                      +.|.+|++||.+..        ..+++.+... ....+++++|||+|.+|+|+|..|.+.|.+||+++|.  .++|..+.
T Consensus       242 s~p~~p~i~g~~~~--------~~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~--~~l~~~d~  310 (561)
T PRK13748        242 ASPAVPPIPGLKET--------PYWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS--TLFFREDP  310 (561)
T ss_pred             CCCCCCCCCCCCcc--------ceEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC--ccccccCH
Confidence            78889999997642        1232222211 2234789999999999999999999999999999985  46777666


Q ss_pred             HHHHHHHhhCCH
Q 022090          229 YLGVVLFKYVPF  240 (303)
Q Consensus       229 ~~~~~~~~~l~~  240 (303)
                      +++..+.+.|..
T Consensus       311 ~~~~~l~~~l~~  322 (561)
T PRK13748        311 AIGEAVTAAFRA  322 (561)
T ss_pred             HHHHHHHHHHHH
Confidence            666655554433

>PTZ00058 glutathione reductase; Provisional

Probab=99.86  E-value=4.7e-21  Score=177.55  Aligned_cols=213  Identities=17%  Similarity=0.210  Sum_probs=130.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC-ccCcCCCCceEEecCccccc----CCCCCCCCCCCCCCCH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSR   80 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg-~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~   80 (303)
                      ..+||+|||||++|+++|..+++.|.+|+|+|++. +|| |.+..|.|+..+........    ...+....  ..-.+.
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~--~~~~d~  123 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDT--QFSFNL  123 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCc--cCccCH
Confidence            35899999999999999999999999999999974 566 45556666554433322211    00111110  011233


Q ss_pred             HHHHHHHHHH-----------HHHcCCCceeEeCe-EEEE---EE-----E------eCCCCeEEEEEe---ecCCCCce
Q 022090           81 AQFIEHLDHY-----------VSHFNIGPSIRYQR-SVES---AS-----Y------DEATNMWNVKAS---NLLSPGRE  131 (303)
Q Consensus        81 ~~l~~~l~~~-----------~~~~~l~~~i~~~~-~V~~---i~-----~------~~~~~~~~v~~~---~~~~~~~~  131 (303)
                      ..+.++..++           .+..+++.  ..+. ++.+   +.     .      ..+++..+|...   ...++   
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g---  198 (561)
T PTZ00058        124 PLLVERRDKYIRRLNDIYRQNLKKDNVEY--FEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG---  198 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCcEE--EEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC---
Confidence            3333333332           23334432  2222 1111   00     0      001122233210   00011   


Q ss_pred             eEEEEeeCEEEEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCc
Q 022090          132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK  211 (303)
Q Consensus       132 ~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~  211 (303)
                       .+ ++||+||+|||  +.|..|++||.+.          ++++.++....  .+++++|||+|.+|+|+|..+.+.|.+
T Consensus       199 -~~-i~ad~lVIATG--S~P~~P~IpG~~~----------v~ts~~~~~l~--~pk~VvIIGgG~iGlE~A~~l~~~G~~  262 (561)
T PTZ00058        199 -QV-IEGKNILIAVG--NKPIFPDVKGKEF----------TISSDDFFKIK--EAKRIGIAGSGYIAVELINVVNRLGAE  262 (561)
T ss_pred             -cE-EECCEEEEecC--CCCCCCCCCCcee----------EEEHHHHhhcc--CCCEEEEECCcHHHHHHHHHHHHcCCc
Confidence             46 89999999999  8888899998642          24444443322  279999999999999999999999999


Q ss_pred             eEEEeecCeeeeehhhHHHHHHHHhhCCHHHH
Q 022090          212 TSLVVRSPVHVLSREMVYLGVVLFKYVPFGWV  243 (303)
Q Consensus       212 vt~~~r~~~~~lp~~~~~~~~~~~~~l~~~~~  243 (303)
                      ||++++.+ +++|..+.++...+.+.|....+
T Consensus       263 Vtli~~~~-~il~~~d~~i~~~l~~~L~~~GV  293 (561)
T PTZ00058        263 SYIFARGN-RLLRKFDETIINELENDMKKNNI  293 (561)
T ss_pred             EEEEEecc-cccccCCHHHHHHHHHHHHHCCC
Confidence            99999998 78887776666655554433333

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.86  E-value=2.8e-21  Score=177.43  Aligned_cols=212  Identities=17%  Similarity=0.168  Sum_probs=130.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecCcc----cccCCCCCCCCCCCCCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQ----FCQLPHLPFPSSYPMFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~   81 (303)
                      .+||+|||||++|+++|..|++.|.+|+|+|+ ..+||.|.+ .|.|+..+.....    ...++.+..+.. ....+..
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~~~   80 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKIDFK   80 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccCHH
Confidence            48999999999999999999999999999999 678887753 3333321111100    000111111111 1345677


Q ss_pred             HHHHHHHHHHHHcCCCc-eeEeC-eEEEEEEEeC-CCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCC
Q 022090           82 QFIEHLDHYVSHFNIGP-SIRYQ-RSVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG  158 (303)
Q Consensus        82 ~l~~~l~~~~~~~~l~~-~i~~~-~~V~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g  158 (303)
                      ++.+++++.+..+.... .-.+. ..|.-+.-.. ..+.+++.+ ++       .+ +.||+||+|||+  .  +|.+||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~-------~~-~~~d~lIiATGs--~--~p~ipg  147 (460)
T PRK06292         81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NG-------ER-IEAKNIVIATGS--R--VPPIPG  147 (460)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-Cc-------EE-EEeCEEEEeCCC--C--CCCCCC
Confidence            88888777666442111 00000 0111111000 001133444 22       57 899999999994  4  456666


Q ss_pred             ccccccCCCCCc-cEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHHhh
Q 022090          159 LCSFCSSATGTG-EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKY  237 (303)
Q Consensus       159 ~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~~~  237 (303)
                      .+..      .+ .++++.+... ....+++++|||+|.+|+|+|..|++.|.+||+++|.+ +++|..+.++...+.+.
T Consensus       148 ~~~~------~~~~~~~~~~~~~-~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~~~~~~  219 (460)
T PRK06292        148 VWLI------LGDRLLTSDDAFE-LDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD-RILPLEDPEVSKQAQKI  219 (460)
T ss_pred             Cccc------CCCcEECchHHhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCcchhHHHHHHHHHH
Confidence            5432      22 2333333322 23457999999999999999999999999999999998 78887776666666555


Q ss_pred             CCHH
Q 022090          238 VPFG  241 (303)
Q Consensus       238 l~~~  241 (303)
                      |...
T Consensus       220 l~~~  223 (460)
T PRK06292        220 LSKE  223 (460)
T ss_pred             Hhhc
Confidence            5444

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.86  E-value=1.3e-21  Score=180.45  Aligned_cols=215  Identities=14%  Similarity=0.173  Sum_probs=134.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC--------CCCCc-cCcCCCCceEEecCccccc-----CCCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--------CYASI-WKKYSYDRLRLHLAKQFCQ-----LPHLPFPS   72 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~--------~~gg~-w~~~~~~~~~~~~~~~~~~-----~~~~~~~~   72 (303)
                      .|||+||||||+|+++|..|+++|.+|+|+|+..        .+||+ .+..|+|+..+........     ...+.+. 
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~-   83 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK-   83 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC-
Confidence            5899999999999999999999999999999732        36775 4556666532221111100     0011111 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeC----CCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090           73 SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDE----ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (303)
Q Consensus        73 ~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~----~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~  148 (303)
                       .+.-.+..++.+++...++.++...  ....++..++...    -.+.++|.+.+...    ... +.||+||+|||  
T Consensus        84 -~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~----~~~-i~~d~lIIATG--  153 (499)
T PTZ00052         84 -TSSSFNWGKLVTTVQNHIRSLNFSY--RTGLRSSKVEYINGLAKLKDEHTVSYGDNSQ----EET-ITAKYILIATG--  153 (499)
T ss_pred             -CCCCcCHHHHHHHHHHHHHHhhHHH--HHHhhhcCcEEEEEEEEEccCCEEEEeeCCC----ceE-EECCEEEEecC--
Confidence             0113467788888888776654332  2221111111100    01224455443211    157 89999999999  


Q ss_pred             CCCCCCC-CCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhh
Q 022090          149 TNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (303)
Q Consensus       149 ~~p~~p~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~  227 (303)
                      +.|..|. +||.+.+         .+.+.+... ....+++++|||+|.+|+|+|..|+++|.+||+++++  .+++..+
T Consensus       154 s~p~~p~~i~G~~~~---------~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~~d  221 (499)
T PTZ00052        154 GRPSIPEDVPGAKEY---------SITSDDIFS-LSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS--IPLRGFD  221 (499)
T ss_pred             CCCCCCCCCCCccce---------eecHHHHhh-hhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--cccccCC
Confidence            7788774 8886532         233333322 2234679999999999999999999999999999874  4667766


Q ss_pred             HHHHHHHHhhCCHHHHH
Q 022090          228 VYLGVVLFKYVPFGWVD  244 (303)
Q Consensus       228 ~~~~~~~~~~l~~~~~~  244 (303)
                      .+++..+.+.|....++
T Consensus       222 ~~~~~~l~~~l~~~GV~  238 (499)
T PTZ00052        222 RQCSEKVVEYMKEQGTL  238 (499)
T ss_pred             HHHHHHHHHHHHHcCCE
Confidence            66666655555443333

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.86  E-value=1e-20  Score=173.41  Aligned_cols=207  Identities=18%  Similarity=0.192  Sum_probs=125.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCCceEEecCccccc------CCCCCCCCCCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFCQ------LPHLPFPSSYPMFVS   79 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~   79 (303)
                      ++||+||||||+|+++|..++++|.+|+|+|+...+||++ +..|.|+..+......+.      +..+-..  ...-.+
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~--~~~~~~   80 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIE--VKPTLN   80 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCcc--ccCccC
Confidence            4899999999999999999999999999999877788864 444555443222111110      0011000  011123


Q ss_pred             HHHHHHHHHHHHH-----------HcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090           80 RAQFIEHLDHYVS-----------HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (303)
Q Consensus        80 ~~~l~~~l~~~~~-----------~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~  148 (303)
                      ..++.++....+.           ..+++.  ..+. . .+  .. ...+.|...++     +..+ ++||+||+|||  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g~-a-~~--~~-~~~v~v~~~~g-----~~~~-~~~d~lVIATG--  145 (466)
T PRK06115         81 LAQMMKQKDESVEALTKGVEFLFRKNKVDW--IKGW-G-RL--DG-VGKVVVKAEDG-----SETQ-LEAKDIVIATG--  145 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEE-E-EE--cc-CCEEEEEcCCC-----ceEE-EEeCEEEEeCC--
Confidence            3343333332221           222221  2111 1 11  11 23344544332     2247 89999999999  


Q ss_pred             CCCCCCCCCCccccccCCCCCcc-EEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhh
Q 022090          149 TNPFTPDIRGLCSFCSSATGTGE-VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (303)
Q Consensus       149 ~~p~~p~~~g~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~  227 (303)
                      +.|.  .+||.+.       .+. ++++.+... ....+++++|||+|.+|+|+|..+.+.|.+||++++.+ .++|..+
T Consensus       146 s~p~--~ipg~~~-------~~~~~~~~~~~~~-~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~-~il~~~d  214 (466)
T PRK06115        146 SEPT--PLPGVTI-------DNQRIIDSTGALS-LPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD-RICPGTD  214 (466)
T ss_pred             CCCC--CCCCCCC-------CCCeEECHHHHhC-CccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-CCCCCCC
Confidence            5553  3566532       232 344443333 22357999999999999999999999999999999998 7888766


Q ss_pred             HHHHHHHHhhCCHH
Q 022090          228 VYLGVVLFKYVPFG  241 (303)
Q Consensus       228 ~~~~~~~~~~l~~~  241 (303)
                      .+....+.+.|...
T Consensus       215 ~~~~~~l~~~l~~~  228 (466)
T PRK06115        215 TETAKTLQKALTKQ  228 (466)
T ss_pred             HHHHHHHHHHHHhc
Confidence            66655555544333

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.86  E-value=1.6e-20  Score=172.44  Aligned_cols=211  Identities=13%  Similarity=0.091  Sum_probs=124.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccc-c----CCCCCCCCCCCCCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFC-Q----LPHLPFPSSYPMFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~   81 (303)
                      ++||+|||||++|+++|..|++.|.+|+|+|++...|.+.+..+.|+..+.....+. .    ...+...  .....+..
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~--~~~~~~~~   81 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS--GEVTFDYG   81 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC--cCcccCHH
Confidence            589999999999999999999999999999997544444455555543221111110 0    0001000  01123444


Q ss_pred             HHHHHHHHHHHHc--CCCceeEeC-eEEEEEEEe---CCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCC
Q 022090           82 QFIEHLDHYVSHF--NIGPSIRYQ-RSVESASYD---EATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD  155 (303)
Q Consensus        82 ~l~~~l~~~~~~~--~l~~~i~~~-~~V~~i~~~---~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~  155 (303)
                      .+..+.+...+..  ++..  .+. ..|+.++-.   .+...+.|...++     +..+ +.||+||+|||  +.|..| 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~g~~~~~~~~~v~v~~~~g-----~~~~-~~~d~lViATG--s~p~~~-  150 (466)
T PRK07818         82 AAFDRSRKVAEGRVKGVHF--LMKKNKITEIHGYGTFTDANTLEVDLNDG-----GTET-VTFDNAIIATG--SSTRLL-  150 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHhCCCEEEEEEEEEcCCCEEEEEecCC-----CeeE-EEcCEEEEeCC--CCCCCC-
Confidence            4444444332221  1111  111 123333211   1123344443332     2257 89999999999  666543 


Q ss_pred             CCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHH
Q 022090          156 IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLF  235 (303)
Q Consensus       156 ~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~  235 (303)
                       ||.+.       .+.++.+.+... ....+++++|||+|.+|+|+|..+++.|.+||++++.+ .++|..+.+++..+.
T Consensus       151 -pg~~~-------~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d~~~~~~l~  220 (466)
T PRK07818        151 -PGTSL-------SENVVTYEEQIL-SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD-RALPNEDAEVSKEIA  220 (466)
T ss_pred             -CCCCC-------CCcEEchHHHhc-cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC-CcCCccCHHHHHHHH
Confidence             55432       223344333222 22357899999999999999999999999999999998 888887766666555


Q ss_pred             hhCCH
Q 022090          236 KYVPF  240 (303)
Q Consensus       236 ~~l~~  240 (303)
                      +.|..
T Consensus       221 ~~l~~  225 (466)
T PRK07818        221 KQYKK  225 (466)
T ss_pred             HHHHH
Confidence            54433

>PLN02546 glutathione reductase

Probab=99.85  E-value=2.5e-21  Score=179.41  Aligned_cols=206  Identities=15%  Similarity=0.177  Sum_probs=129.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC---------CCCCCc-cCcCCCCceEEecCccccc----CCCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE---------NCYASI-WKKYSYDRLRLHLAKQFCQ----LPHLPFPS   72 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~---------~~~gg~-w~~~~~~~~~~~~~~~~~~----~~~~~~~~   72 (303)
                      .|||+|||+|++|+.+|..|+++|.+|+|+|+.         ..+||+ .+..|.|+..+........    ...+.+..
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~  158 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY  158 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence            489999999999999999999999999999962         345664 4555555544322211111    01111100


Q ss_pred             CCCCCCCHHHHHHHHHH-----------HHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEE
Q 022090           73 SYPMFVSRAQFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL  141 (303)
Q Consensus        73 ~~~~~~~~~~l~~~l~~-----------~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v  141 (303)
                      ......++..+.++.++           ..+..+++.  + ..+++.++.      .+|... +       .. +.||+|
T Consensus       159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~--i-~G~a~~vd~------~~V~v~-G-------~~-~~~D~L  220 (558)
T PLN02546        159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTL--I-EGRGKIVDP------HTVDVD-G-------KL-YTARNI  220 (558)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE--E-EeEEEEccC------CEEEEC-C-------EE-EECCEE
Confidence            00111334444444333           233334332  2 222333321      234442 2       57 899999


Q ss_pred             EEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCee
Q 022090          142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH  221 (303)
Q Consensus       142 IlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~  221 (303)
                      |+|||  +.|..|++||.+..          +++.+... ....+++++|||+|.+|+|+|..|++.+.+||++++.+ .
T Consensus       221 VIATG--s~p~~P~IpG~~~v----------~~~~~~l~-~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-~  286 (558)
T PLN02546        221 LIAVG--GRPFIPDIPGIEHA----------IDSDAALD-LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-K  286 (558)
T ss_pred             EEeCC--CCCCCCCCCChhhc----------cCHHHHHh-ccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc-c
Confidence            99999  88889999986532          23322222 22357899999999999999999999999999999998 7


Q ss_pred             eeehhhHHHHHHHHhhCCHHHHH
Q 022090          222 VLSREMVYLGVVLFKYVPFGWVD  244 (303)
Q Consensus       222 ~lp~~~~~~~~~~~~~l~~~~~~  244 (303)
                      ++|..+.++...+.+.|....++
T Consensus       287 il~~~d~~~~~~l~~~L~~~GV~  309 (558)
T PLN02546        287 VLRGFDEEVRDFVAEQMSLRGIE  309 (558)
T ss_pred             cccccCHHHHHHHHHHHHHCCcE
Confidence            88877666665555544443333

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.85  E-value=5.1e-21  Score=175.71  Aligned_cols=211  Identities=18%  Similarity=0.158  Sum_probs=131.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC--------CCCCcc-CcCCCCceEEecCccccc----CCCCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--------CYASIW-KKYSYDRLRLHLAKQFCQ----LPHLPFPSS   73 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~--------~~gg~w-~~~~~~~~~~~~~~~~~~----~~~~~~~~~   73 (303)
                      ++||+|||+|++|+.+|..+++.|.+|+++|+..        .+||+| +..|.|+..+........    ...+.+...
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~   81 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE   81 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence            4899999999999999999999999999999731        467754 556777654433222111    011111000


Q ss_pred             CCCCCCHHHHHHHHHHHHHHc-----------CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEE
Q 022090           74 YPMFVSRAQFIEHLDHYVSHF-----------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV  142 (303)
Q Consensus        74 ~~~~~~~~~l~~~l~~~~~~~-----------~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI  142 (303)
                      .....+...+.++..+.+...           +++.   +.....-++    .....|...++     +... +.||+||
T Consensus        82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~---i~G~a~f~~----~~~v~v~~~~g-----~~~~-~~~d~lV  148 (484)
T TIGR01438        82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNY---ENAYAEFVD----KHRIKATNKKG-----KEKI-YSAERFL  148 (484)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEE---EEEEEEEcC----CCEEEEeccCC-----CceE-EEeCEEE
Confidence            001234555555554443332           2221   111111111    12233332222     1257 8999999


Q ss_pred             EccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeee
Q 022090          143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV  222 (303)
Q Consensus       143 lAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~  222 (303)
                      +|||  +.|..|++||.+..         .+++.+... ....+++++|||+|.+|+|+|..|+++|.+||+++| + .+
T Consensus       149 IATG--s~p~~p~ipG~~~~---------~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~-~~  214 (484)
T TIGR01438       149 IATG--ERPRYPGIPGAKEL---------CITSDDLFS-LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-S-IL  214 (484)
T ss_pred             EecC--CCCCCCCCCCccce---------eecHHHhhc-ccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-c-cc
Confidence            9999  78889999987432         133333322 223467999999999999999999999999999998 4 67


Q ss_pred             eehhhHHHHHHHHhhCCHHHHH
Q 022090          223 LSREMVYLGVVLFKYVPFGWVD  244 (303)
Q Consensus       223 lp~~~~~~~~~~~~~l~~~~~~  244 (303)
                      +|..+.+++..+.+.|....++
T Consensus       215 l~~~d~~~~~~l~~~L~~~gV~  236 (484)
T TIGR01438       215 LRGFDQDCANKVGEHMEEHGVK  236 (484)
T ss_pred             ccccCHHHHHHHHHHHHHcCCE
Confidence            7877777776666655544444

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.85  E-value=1.7e-20  Score=171.74  Aligned_cols=204  Identities=15%  Similarity=0.191  Sum_probs=126.9

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCccccc----CCCCCCCCC-CCCCCCHHHH
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQ----LPHLPFPSS-YPMFVSRAQF   83 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~l   83 (303)
                      +|+|||||++|+++|..|++.|.+|+|+|++...|.|.+..|.|+..+........    ...+..+.. .....++..+
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~   81 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM   81 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence            79999999999999999999999999999987555566666666543322111100    001111000 0112345555


Q ss_pred             HHHHHHHHHHc-----------CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           84 IEHLDHYVSHF-----------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        84 ~~~l~~~~~~~-----------~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      .++..+..++.           +++   .+..++..++    .....|...++      ..+ ++||+||+|||  +.|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~a~~~~----~~~v~v~~~~~------~~~-~~~d~lviATG--s~p~  145 (458)
T PRK06912         82 QARKSQIVTQLVQGIQYLMKKNKIK---VIQGKASFET----DHRVRVEYGDK------EEV-VDAEQFIIAAG--SEPT  145 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEcc----CCEEEEeeCCC------cEE-EECCEEEEeCC--CCCC
Confidence            55554443331           221   1122222221    23344544321      147 89999999999  7777


Q ss_pred             CCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHH
Q 022090          153 TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGV  232 (303)
Q Consensus       153 ~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~  232 (303)
                      .|++++.+..        .++++.+... ....+++++|||+|.+|+|+|..+.+.|.+||++++.+ +++|..+.++..
T Consensus       146 ~~p~~~~~~~--------~v~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~ll~~~d~e~~~  215 (458)
T PRK06912        146 ELPFAPFDGK--------WIINSKHAMS-LPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP-QLLPGEDEDIAH  215 (458)
T ss_pred             CCCCCCCCCC--------eEEcchHHhC-ccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCccccHHHHH
Confidence            6766664321        2344433332 33347899999999999999999999999999999998 788876666655


Q ss_pred             HHHhhC
Q 022090          233 VLFKYV  238 (303)
Q Consensus       233 ~~~~~l  238 (303)
                      .+.+.|
T Consensus       216 ~l~~~L  221 (458)
T PRK06912        216 ILREKL  221 (458)
T ss_pred             HHHHHH
Confidence            554433

>PRK12831 putative oxidoreductase; Provisional

Probab=99.85  E-value=1.2e-20  Score=172.32  Aligned_cols=170  Identities=22%  Similarity=0.276  Sum_probs=120.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..++|+|||||++|+++|..|+++|++|+|||+.+.+||.+.+.               ++.+..        +.+++.+
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~~l--------~~~~~~~  195 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG---------------IPEFRL--------PKETVVK  195 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec---------------CCCccC--------CccHHHH
Confidence            46799999999999999999999999999999999888876421               121111        1234666


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      +..+++++++++.  ++++.+..          .+...+.      ... +.||.||+|||+ +.|+.+++||.+.    
T Consensus       196 ~~~~~~~~~gv~i--~~~~~v~~----------~v~~~~~------~~~-~~~d~viiAtGa-~~~~~l~ipG~~~----  251 (464)
T PRK12831        196 KEIENIKKLGVKI--ETNVVVGK----------TVTIDEL------LEE-EGFDAVFIGSGA-GLPKFMGIPGENL----  251 (464)
T ss_pred             HHHHHHHHcCCEE--EcCCEECC----------cCCHHHH------Hhc-cCCCEEEEeCCC-CCCCCCCCCCcCC----
Confidence            6677777778665  77775521          1222221      024 579999999995 2577888988653    


Q ss_pred             CCCCccEEecccCC-------------CCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehh
Q 022090          166 ATGTGEVIHSTQYK-------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE  226 (303)
Q Consensus       166 ~~~~g~~~~~~~~~-------------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~  226 (303)
                         .| ++...++.             ......+++|+|||+|++|+|+|..+.++|.+||+++|++...+|..
T Consensus       252 ---~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~  321 (464)
T PRK12831        252 ---NG-VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPAR  321 (464)
T ss_pred             ---cC-cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCC
Confidence               22 22222221             11234679999999999999999999999999999999875455543

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.84  E-value=2.6e-20  Score=181.56  Aligned_cols=169  Identities=20%  Similarity=0.271  Sum_probs=122.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..++|+|||||||||+||..|++.|++|+|||+.+.+||...+.               +         |.|-...++.+
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG---------------I---------P~~rlp~~vi~  360 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG---------------I---------PEFRLPNQLID  360 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc---------------C---------CCCcChHHHHH
Confidence            46899999999999999999999999999999999999886532               1         22223346677


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      ...+.++..|+.+  ++++.+.          ..+++.+.       .. ..||.||+|||+ ..|+.+++||.+.    
T Consensus       361 ~~i~~l~~~Gv~f--~~n~~vG----------~dit~~~l-------~~-~~yDAV~LAtGA-~~pr~l~IpG~dl----  415 (944)
T PRK12779        361 DVVEKIKLLGGRF--VKNFVVG----------KTATLEDL-------KA-AGFWKIFVGTGA-GLPTFMNVPGEHL----  415 (944)
T ss_pred             HHHHHHHhhcCeE--EEeEEec----------cEEeHHHh-------cc-ccCCEEEEeCCC-CCCCcCCCCCCcC----
Confidence            7777777788765  6666541          12333332       33 478999999995 3678888998653    


Q ss_pred             CCCCccEEecccCCC--------------C-CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhh
Q 022090          166 ATGTGEVIHSTQYKN--------------G-KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~--------------~-~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~  227 (303)
                         .| ++...++..              . ....+++|+|||+|.+|+|+|..+.+.|++||+++|++...+|...
T Consensus       416 ---~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~  488 (944)
T PRK12779        416 ---LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARV  488 (944)
T ss_pred             ---cC-cEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccH
Confidence               22 222222210              0 1236799999999999999999999999999999998755566443

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.84  E-value=3.2e-20  Score=170.49  Aligned_cols=202  Identities=14%  Similarity=0.177  Sum_probs=123.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC-cCCCCceEEecCccccc----CCCCCCCCCCCCCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   81 (303)
                      .+||+|||||++|+++|..|++.|.+|+|+|+ +.+||+|. ..++|+..+......+.    ...+..... ....+..
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~   78 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE-NVSVDWE   78 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC-CCcCCHH
Confidence            37999999999999999999999999999999 67888764 34555432211111100    000110000 1112344


Q ss_pred             HHHHHHHHH-----------HHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           82 QFIEHLDHY-----------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        82 ~l~~~l~~~-----------~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      .+.++.+..           .+..+++.  .. .++..++    ...+.+...++     . .+ +.||+||+|||  +.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~-g~~~~~~----~~~~~v~~~~g-----~-~~-~~~d~lVlAtG--~~  142 (461)
T TIGR01350        79 KMQKRKNKVVKKLVGGVKGLLKKNKVTV--IK-GEAKFLD----PGTVLVTGENG-----E-ET-LTAKNIIIATG--SR  142 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EE-EEEEEcc----CCEEEEecCCC-----c-EE-EEeCEEEEcCC--CC
Confidence            444443332           22334332  22 2222221    23455554332     1 46 89999999999  77


Q ss_pred             CCCCCCC-CccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHH
Q 022090          151 PFTPDIR-GLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (303)
Q Consensus       151 p~~p~~~-g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~  229 (303)
                      |+.|++| +.         .+..+++.+........+++++|||+|.+|+|+|..|.+.|.+||+++|.+ +++|..+.+
T Consensus       143 p~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~  212 (461)
T TIGR01350       143 PRSLPGPFDF---------DGEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD-RILPGEDAE  212 (461)
T ss_pred             CCCCCCCCCC---------CCceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-CCCCCCCHH
Confidence            7777765 22         222233322222223357899999999999999999999999999999998 777776555


Q ss_pred             HHHHHHh
Q 022090          230 LGVVLFK  236 (303)
Q Consensus       230 ~~~~~~~  236 (303)
                      +...+.+
T Consensus       213 ~~~~~~~  219 (461)
T TIGR01350       213 VSKVVAK  219 (461)
T ss_pred             HHHHHHH
Confidence            5544443

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.84  E-value=5.1e-20  Score=168.88  Aligned_cols=211  Identities=15%  Similarity=0.111  Sum_probs=128.0

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCCceEEecCcccc----cCCCCCCCCC--CCCCCCH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFC----QLPHLPFPSS--YPMFVSR   80 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~   80 (303)
                      ++|+|||+|++|+.+|..|+++|.+|+++|++. +||++ +..|.|+..+.......    ....+.....  .....+.
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   80 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL   80 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence            589999999999999999999999999999976 66654 44444443221111000    0000000000  0001233


Q ss_pred             HHHHHHHHH-----------HHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           81 AQFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        81 ~~l~~~l~~-----------~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      ..+.++..+           .++.++++.  + ..+++.++...+...+.|...++     +..+ +.||+||+|||  +
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~--~-~g~~~~~~~~~~~~~v~V~~~~g-----~~~~-~~~d~lViATG--s  149 (466)
T PRK07845         81 PAVNARVKALAAAQSADIRARLEREGVRV--I-AGRGRLIDPGLGPHRVKVTTADG-----GEET-LDADVVLIATG--A  149 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEE--E-EEEEEEeecccCCCEEEEEeCCC-----ceEE-EecCEEEEcCC--C
Confidence            344433333           334445442  3 33444433111124455655443     1247 89999999999  6


Q ss_pred             CCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHH
Q 022090          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (303)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~  229 (303)
                      .|..|+.++.+.        ..++++.+..+ ....+++++|||+|.+|+|+|..|++.|.+||++++.+ .++|..+..
T Consensus       150 ~p~~~p~~~~~~--------~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~  219 (466)
T PRK07845        150 SPRILPTAEPDG--------ERILTWRQLYD-LDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD-RVLPGEDAD  219 (466)
T ss_pred             CCCCCCCCCCCC--------ceEEeehhhhc-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-cCCCCCCHH
Confidence            776555443221        12445444433 22346899999999999999999999999999999998 788887666


Q ss_pred             HHHHHHhhCCH
Q 022090          230 LGVVLFKYVPF  240 (303)
Q Consensus       230 ~~~~~~~~l~~  240 (303)
                      +...+.+.|..
T Consensus       220 ~~~~l~~~L~~  230 (466)
T PRK07845        220 AAEVLEEVFAR  230 (466)
T ss_pred             HHHHHHHHHHH
Confidence            66555554433

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.84  E-value=6.1e-20  Score=168.85  Aligned_cols=209  Identities=14%  Similarity=0.172  Sum_probs=125.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEec------CCCCCCccCc-CCCCceEEecC-cccccC----CCCCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILER------ENCYASIWKK-YSYDRLRLHLA-KQFCQL----PHLPFPSSY   74 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~------~~~~gg~w~~-~~~~~~~~~~~-~~~~~~----~~~~~~~~~   74 (303)
                      .+||+|||||++|+++|..+++.|.+|+|+|+      ...+||+|.+ .+.|+..+... ..+..+    ..+..+.. 
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~-   82 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD-   82 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC-
Confidence            58999999999999999999999999999998      3567777654 33343211111 000000    11100000 


Q ss_pred             CCCCCHHHHHHHHHH-----------HHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEE
Q 022090           75 PMFVSRAQFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV  143 (303)
Q Consensus        75 ~~~~~~~~l~~~l~~-----------~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIl  143 (303)
                      ..-.+...+.++...           ..+..+++   ....++..++...  +.++|.+....+     .+ ++||+||+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~~~~~~~~~--~~~~v~v~~~~~-----~~-~~~d~lVi  151 (475)
T PRK06327         83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKIT---VLKGRGSFVGKTD--AGYEIKVTGEDE-----TV-ITAKHVII  151 (475)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEEEEEEecCCC--CCCEEEEecCCC-----eE-EEeCEEEE
Confidence            001233344433222           22233433   2333444454333  357777653211     47 89999999


Q ss_pred             ccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeee
Q 022090          144 ASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVL  223 (303)
Q Consensus       144 AtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~l  223 (303)
                      |||  +.|..|+  +.. +      .+..++.++........+++++|||+|.+|+|+|..+.+.|.+||++++.+ .++
T Consensus       152 ATG--s~p~~~p--~~~-~------~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l  219 (475)
T PRK06327        152 ATG--SEPRHLP--GVP-F------DNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP-AFL  219 (475)
T ss_pred             eCC--CCCCCCC--CCC-C------CCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-ccC
Confidence            999  6665332  222 1      223233333222223457999999999999999999999999999999998 777


Q ss_pred             ehhhHHHHHHHHhhCC
Q 022090          224 SREMVYLGVVLFKYVP  239 (303)
Q Consensus       224 p~~~~~~~~~~~~~l~  239 (303)
                      |..+.++...+.+.|.
T Consensus       220 ~~~d~~~~~~~~~~l~  235 (475)
T PRK06327        220 AAADEQVAKEAAKAFT  235 (475)
T ss_pred             CcCCHHHHHHHHHHHH
Confidence            7766555555444433

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.83  E-value=7.9e-20  Score=166.44  Aligned_cols=188  Identities=16%  Similarity=0.191  Sum_probs=120.9

Q ss_pred             CcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ++|+|||||++|+.+|..|++.  +.+|+|+|+++..+       |...         .++...  .  ......+++..
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~-------~~~~---------~lp~~~--~--~~~~~~~~~~~   61 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS-------FANC---------ALPYYI--G--EVVEDRKYALA   61 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc-------cccC---------Ccchhh--c--CccCCHHHccc
Confidence            4899999999999999999887  67999999998643       1110         001100  0  01111222222


Q ss_pred             HH-HHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090           86 HL-DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (303)
Q Consensus        86 ~l-~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~  164 (303)
                      +. ..+.++.+++.  +++++|++|+.++  .  .|.+.++.++  +..+ +.||+||+|||  +.|+.|++++...   
T Consensus        62 ~~~~~~~~~~~i~v--~~~~~V~~Id~~~--~--~v~~~~~~~~--~~~~-~~yd~lviAtG--s~~~~~~~~~~~~---  127 (438)
T PRK13512         62 YTPEKFYDRKQITV--KTYHEVIAINDER--Q--TVTVLNRKTN--EQFE-ESYDKLILSPG--ASANSLGFESDIT---  127 (438)
T ss_pred             CCHHHHHHhCCCEE--EeCCEEEEEECCC--C--EEEEEECCCC--cEEe-eecCEEEECCC--CCCCCCCCCCCCe---
Confidence            22 23345566655  8889999998765  3  3444433211  2245 78999999999  7777666543211   


Q ss_pred             CCCCCccEEecccCCCC-------CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHHhh
Q 022090          165 SATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKY  237 (303)
Q Consensus       165 ~~~~~g~~~~~~~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~~~  237 (303)
                              +......+.       ....+++++|||+|.+|+|+|..|++.|.+||++++++ .+++..+.++...+.+.
T Consensus       128 --------~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~~~d~~~~~~l~~~  198 (438)
T PRK13512        128 --------FTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD-KINKLMDADMNQPILDE  198 (438)
T ss_pred             --------EEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc-ccchhcCHHHHHHHHHH
Confidence                    111111110       11246899999999999999999999999999999998 67776666555555444


Q ss_pred             C
Q 022090          238 V  238 (303)
Q Consensus       238 l  238 (303)
                      |
T Consensus       199 l  199 (438)
T PRK13512        199 L  199 (438)
T ss_pred             H
Confidence            3

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.83  E-value=3.8e-20  Score=169.66  Aligned_cols=222  Identities=14%  Similarity=0.111  Sum_probs=130.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhC-CCCeEEEecC--------CCCCCc-cCcCCCCceEEecCccccc----CCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERE--------NCYASI-WKKYSYDRLRLHLAKQFCQ----LPHLPFP   71 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~iie~~--------~~~gg~-w~~~~~~~~~~~~~~~~~~----~~~~~~~   71 (303)
                      .+|||+|||+|++|+.+|..++++ |.+|+|+|++        ..+||+ .+..|.|+..+........    ...+.+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~   81 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE   81 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence            468999999999999999999997 9999999984        457775 4556666544332221111    0111100


Q ss_pred             CC-CCCCCCHHHHHHHHHHHHHHc--CCCceeEeC--eEEEEEEEeC-CCCeEEEEEeecCCCC-ceeEEEEeeCEEEEc
Q 022090           72 SS-YPMFVSRAQFIEHLDHYVSHF--NIGPSIRYQ--RSVESASYDE-ATNMWNVKASNLLSPG-REIEEYYSGRFLVVA  144 (303)
Q Consensus        72 ~~-~~~~~~~~~l~~~l~~~~~~~--~l~~~i~~~--~~V~~i~~~~-~~~~~~v~~~~~~~~~-~~~~~~~~ad~vIlA  144 (303)
                      .. ...-.++..+.++.+...+..  +...  .+.  ..|+-+.-.. -.+..+|......++. .+..+ +.||+||+|
T Consensus        82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~--~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~-~~~d~lIIA  158 (486)
T TIGR01423        82 FDRSSVKANWKALIAAKNKAVLDINKSYEG--MFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKER-LQAEHILLA  158 (486)
T ss_pred             ccCCccccCHHHHHHHHHHHHHHHHHHHHH--HhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceE-EECCEEEEe
Confidence            00 011234555555555443321  0000  010  0122111000 0011334443210000 01257 899999999


Q ss_pred             cCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhc---cCceEEEeecCee
Q 022090          145 SGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH---AAKTSLVVRSPVH  221 (303)
Q Consensus       145 tG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~---g~~vt~~~r~~~~  221 (303)
                      ||  +.|..|++||.+..          ..+.+... ....+++++|||+|.+|+|+|..+..+   |.+||++++.+ .
T Consensus       159 TG--s~p~~p~i~G~~~~----------~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~-~  224 (486)
T TIGR01423       159 TG--SWPQMLGIPGIEHC----------ISSNEAFY-LDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN-M  224 (486)
T ss_pred             cC--CCCCCCCCCChhhe----------echhhhhc-cccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC-c
Confidence            99  78888999986532          22222222 223478999999999999999877665   89999999998 7


Q ss_pred             eeehhhHHHHHHHHhhCCHHHHH
Q 022090          222 VLSREMVYLGVVLFKYVPFGWVD  244 (303)
Q Consensus       222 ~lp~~~~~~~~~~~~~l~~~~~~  244 (303)
                      ++|..+.+++..+.+.|....++
T Consensus       225 il~~~d~~~~~~l~~~L~~~GI~  247 (486)
T TIGR01423       225 ILRGFDSTLRKELTKQLRANGIN  247 (486)
T ss_pred             cccccCHHHHHHHHHHHHHcCCE
Confidence            88887777776666655444433

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK07846 mycothione reductase; Reviewed

Probab=99.83  E-value=4.7e-20  Score=168.25  Aligned_cols=205  Identities=14%  Similarity=0.143  Sum_probs=124.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCccccc----CCCCCCCCCCCCCCCHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRAQ   82 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~   82 (303)
                      +|||+|||+|++|.++|..+  .|.+|+|+|++...|.|.+..|.|+..+........    .+.+..... ....++.+
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~~   77 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE-LDGVRWPD   77 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC-CCcCCHHH
Confidence            38999999999999988764  599999999976444455666666554322221111    011111000 11235667


Q ss_pred             HHHHHHHHHHHcCCC-ceeE-eC-eEEEEEEEeC-CCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCC
Q 022090           83 FIEHLDHYVSHFNIG-PSIR-YQ-RSVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG  158 (303)
Q Consensus        83 l~~~l~~~~~~~~l~-~~i~-~~-~~V~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g  158 (303)
                      +.++.....++..-. .... +. ..|+-+.-.. -.+..+|.+.++       .+ ++||+||+|||  +.|..|++||
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g-------~~-~~~d~lViATG--s~p~~p~i~g  147 (451)
T PRK07846         78 IVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDG-------EE-ITADQVVIAAG--SRPVIPPVIA  147 (451)
T ss_pred             HHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCC-------CE-EEeCEEEEcCC--CCCCCCCCCC
Confidence            777766655443110 0001 10 1111111000 002245666543       46 89999999999  8888999988


Q ss_pred             ccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHH
Q 022090          159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVL  234 (303)
Q Consensus       159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~  234 (303)
                      .+..        .+..+.+... ....+++++|||+|.+|+|+|..|++.|.+||+++|++ .++|..+.++...+
T Consensus       148 ~~~~--------~~~~~~~~~~-l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~~~~~~l  213 (451)
T PRK07846        148 DSGV--------RYHTSDTIMR-LPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDDDISERF  213 (451)
T ss_pred             cCCc--------cEEchHHHhh-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCHHHHHHH
Confidence            5432        1222222222 22357899999999999999999999999999999998 67776665554433

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.83  E-value=1.1e-19  Score=166.24  Aligned_cols=184  Identities=17%  Similarity=0.297  Sum_probs=120.7

Q ss_pred             cEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            9 EVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +|+|||||++|+++|..|++.+  .+|+|||+++..+  |..              +.++... +   ..+....++..+
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~--------------~~~~~~~-~---~~~~~~~~~~~~   61 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGA--------------CGLPYFV-G---GFFDDPNTMIAR   61 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eec--------------CCCceEe-c---cccCCHHHhhcC
Confidence            7999999999999999999875  5899999988643  110              0001100 0   011122334444


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEe--eCEEEEccCCCCCCCCCCCCCcccccc
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS--GRFLVVASGETTNPFTPDIRGLCSFCS  164 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~--ad~vIlAtG~~~~p~~p~~~g~~~~~~  164 (303)
                      ..+.+++.+++.  +++++|++++.++  .  .|.+.+..++    .. +.  ||+||+|||  +.|..|.+||.+.   
T Consensus        62 ~~~~~~~~gv~~--~~~~~V~~id~~~--~--~v~~~~~~~~----~~-~~~~yd~lviAtG--~~~~~~~i~g~~~---  125 (444)
T PRK09564         62 TPEEFIKSGIDV--KTEHEVVKVDAKN--K--TITVKNLKTG----SI-FNDTYDKLMIATG--ARPIIPPIKNINL---  125 (444)
T ss_pred             CHHHHHHCCCeE--EecCEEEEEECCC--C--EEEEEECCCC----CE-EEecCCEEEECCC--CCCCCCCCCCcCC---
Confidence            445556667654  7889999998765  3  3444331111    33 45  999999999  7788888888753   


Q ss_pred             CCCCCccEEecccCCCC-------CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh-hhHHHHHHH
Q 022090          165 SATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR-EMVYLGVVL  234 (303)
Q Consensus       165 ~~~~~g~~~~~~~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~-~~~~~~~~~  234 (303)
                          . .+++...+.+.       ....+++++|||+|.+|+|+|..+.+.|.+|+++++.+ .++|. .+.++...+
T Consensus       126 ----~-~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~~l  197 (444)
T PRK09564        126 ----E-NVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED-RILPDSFDKEITDVM  197 (444)
T ss_pred             ----C-CEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc-ccCchhcCHHHHHHH
Confidence                1 23333322111       11346899999999999999999999999999999988 66663 333444333

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.83  E-value=4.2e-20  Score=173.50  Aligned_cols=213  Identities=14%  Similarity=0.132  Sum_probs=130.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC-CCCCCc-cCcCCCCceEEecCccc------------ccCCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NCYASI-WKKYSYDRLRLHLAKQF------------CQLPHLPFP   71 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~-~~~gg~-w~~~~~~~~~~~~~~~~------------~~~~~~~~~   71 (303)
                      ..|||+|||+|++|+.+|..++++|.+|+|||++ ..+||+ .+..|.|+..+......            +.+....+|
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~  194 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFK  194 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecccc
Confidence            3689999999999999999999999999999975 356774 44555554432211111            011100000


Q ss_pred             --------CC----CCCCCCHHHHHHHHHHHHHHcC--CCc-----eeEeCeEEEEEEEeCC--CCeEEEEEeecCCCCc
Q 022090           72 --------SS----YPMFVSRAQFIEHLDHYVSHFN--IGP-----SIRYQRSVESASYDEA--TNMWNVKASNLLSPGR  130 (303)
Q Consensus        72 --------~~----~~~~~~~~~l~~~l~~~~~~~~--l~~-----~i~~~~~V~~i~~~~~--~~~~~v~~~~~~~~~~  130 (303)
                              ..    .....++..+.++.+...+...  +..     .+...++...+.....  .+..+|.....  +  
T Consensus       195 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~--g--  270 (659)
T PTZ00153        195 NGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKS--G--  270 (659)
T ss_pred             ccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccC--C--
Confidence                    00    0112366777777776655431  110     0011111222222110  01122333211  1  


Q ss_pred             eeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccC
Q 022090          131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA  210 (303)
Q Consensus       131 ~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~  210 (303)
                        .+ +.||+||+|||  +.|..|++++.+..        .++++.+... ....+++++|||+|.+|+|+|..+.++|.
T Consensus       271 --~~-i~ad~lIIATG--S~P~~P~~~~~~~~--------~V~ts~d~~~-l~~lpk~VvIVGgG~iGvE~A~~l~~~G~  336 (659)
T PTZ00153        271 --KE-FKVKNIIIATG--STPNIPDNIEVDQK--------SVFTSDTAVK-LEGLQNYMGIVGMGIIGLEFMDIYTALGS  336 (659)
T ss_pred             --EE-EECCEEEEcCC--CCCCCCCCCCCCCC--------cEEehHHhhh-hhhcCCceEEECCCHHHHHHHHHHHhCCC
Confidence              57 89999999999  78887776554321        2444433322 22347899999999999999999999999


Q ss_pred             ceEEEeecCeeeeehhhHHHHHHHHhh
Q 022090          211 KTSLVVRSPVHVLSREMVYLGVVLFKY  237 (303)
Q Consensus       211 ~vt~~~r~~~~~lp~~~~~~~~~~~~~  237 (303)
                      +||++++.+ .++|..+.+++..+.+.
T Consensus       337 eVTLIe~~~-~ll~~~d~eis~~l~~~  362 (659)
T PTZ00153        337 EVVSFEYSP-QLLPLLDADVAKYFERV  362 (659)
T ss_pred             eEEEEeccC-cccccCCHHHHHHHHHH
Confidence            999999999 78887777666655553

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.83  E-value=1.7e-19  Score=161.47  Aligned_cols=169  Identities=20%  Similarity=0.328  Sum_probs=117.6

Q ss_pred             CcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ++|+|||||+||+.+|..|++.  ..+|+|+++++...       |....+              +..........++..
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-------y~~~~l--------------~~~~~~~~~~~~~~~   61 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-------YNKPDL--------------SHVFSQGQRADDLTR   61 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------cCcCcC--------------cHHHhCCCCHHHhhc
Confidence            5899999999999999999886  45899999987421       211100              000111122234443


Q ss_pred             H-HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090           86 H-LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (303)
Q Consensus        86 ~-l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~  164 (303)
                      + ..+++++++++.  +++++|++++.+.    +.|...+        .. +.||+||+|||  +.|..|++||.+..  
T Consensus        62 ~~~~~~~~~~gv~~--~~~~~V~~id~~~----~~v~~~~--------~~-~~yd~LVlATG--~~~~~p~i~G~~~v--  122 (377)
T PRK04965         62 QSAGEFAEQFNLRL--FPHTWVTDIDAEA----QVVKSQG--------NQ-WQYDKLVLATG--ASAFVPPIPGRELM--  122 (377)
T ss_pred             CCHHHHHHhCCCEE--ECCCEEEEEECCC----CEEEECC--------eE-EeCCEEEECCC--CCCCCCCCCCCceE--
Confidence            2 455667777665  7889999998755    4555432        56 89999999999  77888889886431  


Q ss_pred             CCCCCccEEecccCCC-----CCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh
Q 022090          165 SATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (303)
Q Consensus       165 ~~~~~g~~~~~~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~  225 (303)
                              ++.....+     .....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ +++++
T Consensus       123 --------~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~-~~l~~  179 (377)
T PRK04965        123 --------LTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA-SLLAS  179 (377)
T ss_pred             --------EEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-cccch
Confidence                    22211111     111246899999999999999999999999999999998 66655

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.82  E-value=9.9e-20  Score=166.03  Aligned_cols=161  Identities=19%  Similarity=0.218  Sum_probs=113.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+.               ++.+         ....++.+
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip~~---------~~~~~~~~  187 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG---------------IPEF---------RLPKEIVV  187 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec---------------CCCc---------cCCHHHHH
Confidence            45799999999999999999999999999999998888876421               1111         11135555


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      ...+.++..+++.  ++++.+      .    ..+.+.+        .. ..||+||+|||+ +.|..|++||.+.    
T Consensus       188 ~~~~~l~~~gv~~--~~~~~v------~----~~v~~~~--------~~-~~yd~viiAtGa-~~p~~~~ipG~~~----  241 (449)
T TIGR01316       188 TEIKTLKKLGVTF--RMNFLV------G----KTATLEE--------LF-SQYDAVFIGTGA-GLPKLMNIPGEEL----  241 (449)
T ss_pred             HHHHHHHhCCcEE--EeCCcc------C----CcCCHHH--------HH-hhCCEEEEeCCC-CCCCcCCCCCCCC----
Confidence            5555666667654  666543      1    1233322        23 468999999995 2678888888653    


Q ss_pred             CCCCccEEecccCC--------------CCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCe
Q 022090          166 ATGTGEVIHSTQYK--------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (303)
Q Consensus       166 ~~~~g~~~~~~~~~--------------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~  220 (303)
                         .+ +++..++.              ......+++|+|||+|++|+|+|..+.+.|.+||+++|++.
T Consensus       242 ---~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       242 ---CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             ---CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence               22 23322221              11123579999999999999999999999999999999874

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.82  E-value=4.1e-21  Score=168.57  Aligned_cols=208  Identities=19%  Similarity=0.220  Sum_probs=139.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      +++|||||||++|+.+|..|.+..  .+++++|+++..-       +..+..               +-.....+..++.
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-------~~plL~---------------eva~g~l~~~~i~   60 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-------FTPLLY---------------EVATGTLSESEIA   60 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc-------cchhhh---------------hhhcCCCChhhee
Confidence            468999999999999999999974  8999999987521       111110               0111223334445


Q ss_pred             HHHHHHHHHcC-CCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022090           85 EHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (303)
Q Consensus        85 ~~l~~~~~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~  163 (303)
                      .-++..++..+ ++   ....+|++|+.+.    .+|.+.+.       .. +.||+||+|+|  +.+..+.+||..+++
T Consensus        61 ~p~~~~~~~~~~v~---~~~~~V~~ID~~~----k~V~~~~~-------~~-i~YD~LVvalG--s~~~~fgi~G~~E~a  123 (405)
T COG1252          61 IPLRALLRKSGNVQ---FVQGEVTDIDRDA----KKVTLADL-------GE-ISYDYLVVALG--SETNYFGIPGAAEYA  123 (405)
T ss_pred             ccHHHHhcccCceE---EEEEEEEEEcccC----CEEEeCCC-------cc-ccccEEEEecC--CcCCcCCCCCHHHhC
Confidence            55566655443 22   4567899998877    66777763       46 89999999999  888888899976652


Q ss_pred             -------cCCCCCccEEecccCCC-CCC-CCCCeEEEECCCccHHHHHHHHhhccC-------------ceEEEeecCee
Q 022090          164 -------SSATGTGEVIHSTQYKN-GKP-YGGKNVLVVGSGNSGMEIALDLANHAA-------------KTSLVVRSPVH  221 (303)
Q Consensus       164 -------~~~~~~g~~~~~~~~~~-~~~-~~~~~v~ViG~G~~g~e~a~~l~~~g~-------------~vt~~~r~~~~  221 (303)
                             ++.++..++....+..+ ... ..-.+++|+|+|++|+|+|.+|+++..             +|+++++.| .
T Consensus       124 ~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p-~  202 (405)
T COG1252         124 FGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP-R  202 (405)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc-h
Confidence                   00011111110000001 000 012379999999999999999997643             899999999 9


Q ss_pred             eeehhhHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q 022090          222 VLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLV  254 (303)
Q Consensus       222 ~lp~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  254 (303)
                      +||.+..+++...++.|.+..++..++..+..+
T Consensus       203 ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v  235 (405)
T COG1252         203 ILPMFPPKLSKYAERALEKLGVEVLLGTPVTEV  235 (405)
T ss_pred             hccCCCHHHHHHHHHHHHHCCCEEEcCCceEEE
Confidence            999988888887777777777766655544443

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=99.82  E-value=7.6e-20  Score=154.86  Aligned_cols=224  Identities=13%  Similarity=0.113  Sum_probs=150.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCCceEEecCcccccCCCC-CCC----CCCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFCQLPHL-PFP----SSYPMFVS   79 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~   79 (303)
                      ..+||+|||+||+|..+|.++++.|++.+++|++..+||++ +..|.|+..+.....+++.... .+.    +-.+.-.+
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d  117 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD  117 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence            46899999999999999999999999999999999999865 4455555444333333322111 000    01122334


Q ss_pred             HHHHHHHHHHHHHHc--CCCceeEeC-eEEEEEE---EeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           80 RAQFIEHLDHYVSHF--NIGPSIRYQ-RSVESAS---YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        80 ~~~l~~~l~~~~~~~--~l~~~i~~~-~~V~~i~---~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      ...+++.....++++  ++..  .|. ..|+-+.   .-.+.....+.-.++     +... ++++++|+|||  |.  +
T Consensus       118 l~~~~~~k~~~vk~Lt~gi~~--lfkknkV~~~kG~gsf~~p~~V~v~k~dg-----~~~i-i~aKnIiiATG--Se--V  185 (506)
T KOG1335|consen  118 LQAMMKAKDNAVKQLTGGIEN--LFKKNKVTYVKGFGSFLDPNKVSVKKIDG-----EDQI-IKAKNIIIATG--SE--V  185 (506)
T ss_pred             HHHHHHHHHHHHHHHhhHHHH--HhhhcCeEEEeeeEeecCCceEEEeccCC-----CceE-EeeeeEEEEeC--Cc--c
Confidence            556666666655544  1111  111 1222221   111112233333333     3367 99999999999  42  5


Q ss_pred             CCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHH
Q 022090          154 PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV  233 (303)
Q Consensus       154 p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~  233 (303)
                      +++||++-       ++..+-+++-.-....-|++++|||+|.+|+|++.-..++|++||+++-.+ .+.+..+.+++..
T Consensus       186 ~~~PGI~I-------DekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~-~i~~~mD~Eisk~  257 (506)
T KOG1335|consen  186 TPFPGITI-------DEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD-QIGGVMDGEISKA  257 (506)
T ss_pred             CCCCCeEe-------cCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehh-hhccccCHHHHHH
Confidence            56788754       454454554444466779999999999999999999999999999999999 8999988899998


Q ss_pred             HHhhCCHHHHHHHHHH
Q 022090          234 LFKYVPFGWVDTLMVM  249 (303)
Q Consensus       234 ~~~~l~~~~~~~~~~~  249 (303)
                      +++.|.++.+++.+.+
T Consensus       258 ~qr~L~kQgikF~l~t  273 (506)
T KOG1335|consen  258 FQRVLQKQGIKFKLGT  273 (506)
T ss_pred             HHHHHHhcCceeEecc
Confidence            8888887777766554

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.81  E-value=2.2e-19  Score=161.63  Aligned_cols=172  Identities=19%  Similarity=0.250  Sum_probs=111.7

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .+|+|||||++|+++|..|++.|.  +|+++++++...       |....+  +..+..   .+...  ..+..      
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-------y~r~~l--~~~~~~---~~~~~--~~~~~------   63 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-------YERPPL--SKSMLL---EDSPQ--LQQVL------   63 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-------CCCCCC--CHHHHC---CCCcc--ccccC------
Confidence            589999999999999999999876  799999987542       221110  000000   00000  00000      


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                       -.++....+++.  +.++.|+.++...    ..|.+.++       .+ +.||+||+|||  +.|+.+++++...    
T Consensus        64 -~~~~~~~~~i~~--~~g~~V~~id~~~----~~v~~~~g-------~~-~~yd~LViATG--s~~~~~p~~~~~~----  122 (396)
T PRK09754         64 -PANWWQENNVHL--HSGVTIKTLGRDT----RELVLTNG-------ES-WHWDQLFIATG--AAARPLPLLDALG----  122 (396)
T ss_pred             -CHHHHHHCCCEE--EcCCEEEEEECCC----CEEEECCC-------CE-EEcCEEEEccC--CCCCCCCCCCcCC----
Confidence             012233446554  7888899998765    45666554       56 89999999999  6666666554321    


Q ss_pred             CCCCccEEecccCCC-----CCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh
Q 022090          166 ATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~  225 (303)
                         . .++......+     .....+++++|||+|.+|+|+|..|.+.|.+||++++.+ .++++
T Consensus       123 ---~-~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~  182 (396)
T PRK09754        123 ---E-RCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA-TVMGR  182 (396)
T ss_pred             ---C-CEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-cchhh
Confidence               1 1222111111     112247899999999999999999999999999999998 66665

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.81  E-value=2.4e-19  Score=173.35  Aligned_cols=185  Identities=19%  Similarity=0.192  Sum_probs=128.0

Q ss_pred             CcEEEECCcHHHHHHHHHHhhC----CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~----g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (303)
                      .+|+|||+|++|+.+|..|.+.    +++|+||++++..+       |..+.+...     +         .. ...+++
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~-------Y~r~~L~~~-----~---------~~-~~~~~l   61 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA-------YDRVHLSSY-----F---------SH-HTAEEL   61 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc-------ccCCcchHh-----H---------cC-CCHHHc
Confidence            5899999999999999999764    47999999998753       433322110     0         00 112333


Q ss_pred             HHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022090           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (303)
Q Consensus        84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~  163 (303)
                      ......+.+..+++.  +.++.|+.++...    ..|.+.++       .. +.||+||+|||  +.|..|++||.+.. 
T Consensus        62 ~~~~~~~~~~~gI~~--~~g~~V~~Id~~~----~~V~~~~G-------~~-i~yD~LVIATG--s~p~~p~ipG~~~~-  124 (847)
T PRK14989         62 SLVREGFYEKHGIKV--LVGERAITINRQE----KVIHSSAG-------RT-VFYDKLIMATG--SYPWIPPIKGSETQ-  124 (847)
T ss_pred             cCCCHHHHHhCCCEE--EcCCEEEEEeCCC----cEEEECCC-------cE-EECCEEEECCC--CCcCCCCCCCCCCC-
Confidence            333445556667665  8888999997754    55666553       56 89999999999  88889999997642 


Q ss_pred             cCCCCCccEEecccCCCC-----CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh-hhHHHHHHHHhh
Q 022090          164 SSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR-EMVYLGVVLFKY  237 (303)
Q Consensus       164 ~~~~~~g~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~-~~~~~~~~~~~~  237 (303)
                            + ++......+.     ....+++++|||+|.+|+|+|..|.++|.+||++++.+ +++|+ .+...+..+.+.
T Consensus       125 ------~-v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~-~ll~~~ld~~~~~~l~~~  196 (847)
T PRK14989        125 ------D-CFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP-MLMAEQLDQMGGEQLRRK  196 (847)
T ss_pred             ------C-eEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc-cchhhhcCHHHHHHHHHH
Confidence                  2 2222111110     12246899999999999999999999999999999998 77775 344555555444


Q ss_pred             CC
Q 022090          238 VP  239 (303)
Q Consensus       238 l~  239 (303)
                      |.
T Consensus       197 L~  198 (847)
T PRK14989        197 IE  198 (847)
T ss_pred             HH
Confidence            43

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.81  E-value=5.5e-19  Score=170.42  Aligned_cols=170  Identities=25%  Similarity=0.323  Sum_probs=116.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..++|+|||||+||+++|..|+++|++|+|||+.+.+||.+++.               ++.         +....++.+
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~---------------IP~---------~Rlp~evL~  593 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI---------------IPQ---------FRIPAELIQ  593 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee---------------ccc---------ccccHHHHH
Confidence            45799999999999999999999999999999999999876531               111         111134455


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      +..+.+...++++  ++++.+ .+..+           +.       .. ..||+||+|||+. .+..+.++|.+.    
T Consensus       594 ~die~l~~~GVe~--~~gt~V-di~le-----------~L-------~~-~gYDaVILATGA~-~~~~l~IpG~~~----  646 (1019)
T PRK09853        594 HDIEFVKAHGVKF--EFGCSP-DLTVE-----------QL-------KN-EGYDYVVVAIGAD-KNGGLKLEGGNQ----  646 (1019)
T ss_pred             HHHHHHHHcCCEE--EeCcee-EEEhh-----------hh-------ee-ccCCEEEECcCCC-CCCCCCCCCccC----
Confidence            5556666677655  777765 22111           11       34 5689999999953 344456776531    


Q ss_pred             CCCCccEEecccCCC------CCCCCCCeEEEECCCccHHHHHHHHhhcc--CceEEEeecCeeeeehhhHHHH
Q 022090          166 ATGTGEVIHSTQYKN------GKPYGGKNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSPVHVLSREMVYLG  231 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~------~~~~~~~~v~ViG~G~~g~e~a~~l~~~g--~~vt~~~r~~~~~lp~~~~~~~  231 (303)
                           .+++..++..      .....+++|+|||+|++|+|+|..+.+.+  .+||+++|++...+|.....+.
T Consensus       647 -----gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle  715 (1019)
T PRK09853        647 -----NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYE  715 (1019)
T ss_pred             -----CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHH
Confidence                 1222222211      12235899999999999999999998884  4899999998667776554443

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=1e-18  Score=137.88  Aligned_cols=175  Identities=16%  Similarity=0.269  Sum_probs=133.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC----CCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN----CYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ   82 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~----~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (303)
                      .-+|+|||+||++..+|..++++..+.++||--.    ..||+.          ......-.||.      +|+-....+
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQL----------tTTT~veNfPG------FPdgi~G~~   71 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQL----------TTTTDVENFPG------FPDGITGPE   71 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCcee----------eeeeccccCCC------CCcccccHH
Confidence            3489999999999999999999999999999532    223321          11111111222      233345789


Q ss_pred             HHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCc-cc
Q 022090           83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGL-CS  161 (303)
Q Consensus        83 l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~-~~  161 (303)
                      +++.+++...++|.+   .+...|.+++...  ..|.|.++.        +. +.+|.||+|||.  ..+...+||. +.
T Consensus        72 l~d~mrkqs~r~Gt~---i~tEtVskv~~ss--kpF~l~td~--------~~-v~~~avI~atGA--sAkRl~~pg~ge~  135 (322)
T KOG0404|consen   72 LMDKMRKQSERFGTE---IITETVSKVDLSS--KPFKLWTDA--------RP-VTADAVILATGA--SAKRLHLPGEGEG  135 (322)
T ss_pred             HHHHHHHHHHhhcce---eeeeehhhccccC--CCeEEEecC--------Cc-eeeeeEEEeccc--ceeeeecCCCCcc
Confidence            999999999999977   4556788887765  678888865        46 799999999994  4455667765 32


Q ss_pred             -cccCCCCCccEEecccCCCCCC--CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          162 -FCSSATGTGEVIHSTQYKNGKP--YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       162 -~~~~~~~~g~~~~~~~~~~~~~--~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                       |      ..+-+.++..++...  +++|..+|||+|-+|+|-|..|...+++|++++|++
T Consensus       136 ~f------WqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd  190 (322)
T KOG0404|consen  136 EF------WQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRD  190 (322)
T ss_pred             hH------HhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhh
Confidence             5      566677888887544  789999999999999999999999999999999999

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.80  E-value=2.7e-19  Score=172.91  Aligned_cols=181  Identities=20%  Similarity=0.235  Sum_probs=124.0

Q ss_pred             EEEECCcHHHHHHHHHHhhC---CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090           10 VIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus        10 vvIIGaG~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      |+|||+|++|+.+|..|++.   +++|+||++.+..+       |..+.+.         .     ......+.+++...
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L~---------~-----~l~g~~~~~~l~~~   59 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILLS---------S-----VLQGEADLDDITLN   59 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------ccccccc---------H-----HHCCCCCHHHccCC
Confidence            68999999999999998875   46999999998753       3222110         0     00111122333333


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~  166 (303)
                      ..++.++.+++.  +++++|++++...    +.|.+.++       .+ +.||+||+|||  +.|+.|++||.+.     
T Consensus        60 ~~~~~~~~gv~~--~~g~~V~~Id~~~----k~V~~~~g-------~~-~~yD~LVlATG--s~p~~p~ipG~~~-----  118 (785)
T TIGR02374        60 SKDWYEKHGITL--YTGETVIQIDTDQ----KQVITDAG-------RT-LSYDKLILATG--SYPFILPIPGADK-----  118 (785)
T ss_pred             CHHHHHHCCCEE--EcCCeEEEEECCC----CEEEECCC-------cE-eeCCEEEECCC--CCcCCCCCCCCCC-----
Confidence            344556667665  8899999998765    56777654       56 89999999999  7888999999764     


Q ss_pred             CCCccEEecccCCC-----CCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehh-hHHHHHHHHh
Q 022090          167 TGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE-MVYLGVVLFK  236 (303)
Q Consensus       167 ~~~g~~~~~~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~-~~~~~~~~~~  236 (303)
                        .+ ++......+     .....+++++|||+|.+|+|+|..|.+.|.+||++++.+ +++++. +...+..+.+
T Consensus       119 --~~-v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~-~ll~~~ld~~~~~~l~~  190 (785)
T TIGR02374       119 --KG-VYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP-GLMAKQLDQTAGRLLQR  190 (785)
T ss_pred             --CC-EEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC-chhhhhcCHHHHHHHHH
Confidence              22 222221111     011246899999999999999999999999999999998 676653 2333433333

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.80  E-value=5.7e-19  Score=170.57  Aligned_cols=169  Identities=24%  Similarity=0.320  Sum_probs=117.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..++|+|||||+||+++|..|+++|++|+|||+.+.+||.+.+.               ++.+..|         .++.+
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~rlp---------~~~~~  485 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG---------------IPEFRLP---------KKIVD  485 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------CCCCCCC---------HHHHH
Confidence            45799999999999999999999999999999998888876432               1221111         24555


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      ...+.++++++++  ++++.+.          ..+.+.+.       .. ..||.||+|||+ +.|+.+++||.+.    
T Consensus       486 ~~~~~l~~~gv~~--~~~~~v~----------~~v~~~~l-------~~-~~ydavvlAtGa-~~~~~l~ipG~~~----  540 (752)
T PRK12778        486 VEIENLKKLGVKF--ETDVIVG----------KTITIEEL-------EE-EGFKGIFIASGA-GLPNFMNIPGENS----  540 (752)
T ss_pred             HHHHHHHHCCCEE--ECCCEEC----------CcCCHHHH-------hh-cCCCEEEEeCCC-CCCCCCCCCCCCC----
Confidence            5556666777655  6666441          11222221       34 569999999995 2577888888653    


Q ss_pred             CCCCccEEecccCC-------------CCCCCCCCeEEEECCCccHHHHHHHHhhccCc-eEEEeecCeeeeehhh
Q 022090          166 ATGTGEVIHSTQYK-------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSPVHVLSREM  227 (303)
Q Consensus       166 ~~~~g~~~~~~~~~-------------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-vt~~~r~~~~~lp~~~  227 (303)
                         .| +++..++.             ......+++|+|||+|++|+|+|..+.+.|.+ ||+++|++...+|...
T Consensus       541 ---~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~  612 (752)
T PRK12778        541 ---NG-VMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARL  612 (752)
T ss_pred             ---CC-cEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCH
Confidence               12 23322211             11224579999999999999999999999987 9999998755566543

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.79  E-value=5.9e-19  Score=161.62  Aligned_cols=167  Identities=20%  Similarity=0.271  Sum_probs=117.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..++|+|||||++|+++|..|++.|++|+|+|+.+.+||.+...               ++         .+....++.+
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g---------------ip---------~~~~~~~~~~  194 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG---------------IP---------EFRLPKDIVD  194 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc---------------CC---------CccCCHHHHH
Confidence            45799999999999999999999999999999999888875431               11         1111236667


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      +..+.++.++++.  ++++.+..          .+.+.+        .. +.||+||+|||+ ..|..+.+||.+.    
T Consensus       195 ~~~~~l~~~gv~~--~~~~~v~~----------~v~~~~--------~~-~~~d~vvlAtGa-~~~~~~~i~G~~~----  248 (457)
T PRK11749        195 REVERLLKLGVEI--RTNTEVGR----------DITLDE--------LR-AGYDAVFIGTGA-GLPRFLGIPGENL----  248 (457)
T ss_pred             HHHHHHHHcCCEE--EeCCEECC----------ccCHHH--------HH-hhCCEEEEccCC-CCCCCCCCCCccC----
Confidence            7777777777655  67765511          112222        23 578999999995 2466667887653    


Q ss_pred             CCCCccEEecccCCC--------CCCCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecCeeeeehh
Q 022090          166 ATGTGEVIHSTQYKN--------GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSRE  226 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~--------~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~~~~lp~~  226 (303)
                         .+ +++..++..        .....+++|+|||+|.+|+|+|..+.+.|. +||+++|++...+|..
T Consensus       249 ---~g-v~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~  314 (457)
T PRK11749        249 ---GG-VYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPAS  314 (457)
T ss_pred             ---CC-cEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC
Confidence               22 233222211        112358999999999999999999999987 8999999875556553

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.8e-18  Score=144.35  Aligned_cols=219  Identities=19%  Similarity=0.232  Sum_probs=147.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEec--CCCCCCccCc-------CCCCceEEecCc----ccccCCCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILER--ENCYASIWKK-------YSYDRLRLHLAK----QFCQLPHLPFPS   72 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~--~~~~gg~w~~-------~~~~~~~~~~~~----~~~~~~~~~~~~   72 (303)
                      ..||++|||||.+||+||++++..|.+|.++|-  -...|..|.-       .+.|...++...    .+.....+.|..
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~~   97 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWNV   97 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            468999999999999999999999999999984  2235555643       222222111110    000111111221


Q ss_pred             CC-CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCC----eEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           73 SY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN----MWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        73 ~~-~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~----~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      .. .--+++..+.+..++.++..++-.++.++.  ..+...+.-+    ..++...+..+   +.+. ++++.+++||| 
T Consensus        98 ~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~Lre--KkV~Y~NsygeFv~~h~I~at~~~g---k~~~-~ta~~fvIatG-  170 (503)
T KOG4716|consen   98 DEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLRE--KKVEYINSYGEFVDPHKIKATNKKG---KERF-LTAENFVIATG-  170 (503)
T ss_pred             ccccccccHHHHHHHHHHHhhhccceEEEEecc--ceeeeeecceeecccceEEEecCCC---ceEE-eecceEEEEec-
Confidence            11 234578899999999998887665333332  2222222112    23344333221   3366 89999999999 


Q ss_pred             CCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhh
Q 022090          148 TTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (303)
Q Consensus       148 ~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~  227 (303)
                       .+|+.|++||...+         .+.|.+... ..+.+.+.+|||+|++|+|+|..|+..|.+||++.|+-  +|..++
T Consensus       171 -~RPrYp~IpG~~Ey---------~ITSDDlFs-l~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI--~LrGFD  237 (503)
T KOG4716|consen  171 -LRPRYPDIPGAKEY---------GITSDDLFS-LPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI--LLRGFD  237 (503)
T ss_pred             -CCCCCCCCCCceee---------eeccccccc-ccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe--eccccc
Confidence             89999999997765         366666555 66678888999999999999999999999999999984  777777


Q ss_pred             HHHHHHHHhhCCHHHHH
Q 022090          228 VYLGVVLFKYVPFGWVD  244 (303)
Q Consensus       228 ~~~~~~~~~~l~~~~~~  244 (303)
                      .+++..+...|....+.
T Consensus       238 qdmae~v~~~m~~~Gik  254 (503)
T KOG4716|consen  238 QDMAELVAEHMEERGIK  254 (503)
T ss_pred             HHHHHHHHHHHHHhCCc
Confidence            78877776666554444

>TIGR03452 mycothione_red mycothione reductase

Probab=99.78  E-value=1.3e-18  Score=159.03  Aligned_cols=204  Identities=14%  Similarity=0.167  Sum_probs=118.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCccccc----CCCCCCCCCCCCCCCHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRAQ   82 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~   82 (303)
                      +|||+|||+|++|..+|..  .+|.+|+++|++...|.|.+..|.|+..+........    ...+..... ....++..
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~d~~~   78 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE-IDSVRWPD   78 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC-CCccCHHH
Confidence            5899999999999998654  4699999999965444455666666654432222111    111111100 11235666


Q ss_pred             HHHHHHH-HHHHc-CCCceeEeC---eEEEEEEEeC-CCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCC
Q 022090           83 FIEHLDH-YVSHF-NIGPSIRYQ---RSVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI  156 (303)
Q Consensus        83 l~~~l~~-~~~~~-~l~~~i~~~---~~V~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~  156 (303)
                      ++++... ..+.. .........   ..|+-+.-.. -.+.++|.+.++       .+ ++||+||+|||  +.|..|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g-------~~-~~~d~lIiATG--s~p~~p~~  148 (452)
T TIGR03452        79 IVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDG-------EE-ITGDQIVIAAG--SRPYIPPA  148 (452)
T ss_pred             HHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCC-------cE-EEeCEEEEEEC--CCCCCCCC
Confidence            6666544 22221 000000100   1111111000 012356666543       46 89999999999  77877764


Q ss_pred             CCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHH
Q 022090          157 RGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV  233 (303)
Q Consensus       157 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~  233 (303)
                      .+....        .+..+.+... ....+++++|||+|.+|+|+|..|.+.|.+||++++.+ .++|..+.++...
T Consensus       149 ~~~~~~--------~~~~~~~~~~-l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~~~~~~  215 (452)
T TIGR03452       149 IADSGV--------RYHTNEDIMR-LPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHLDEDISDR  215 (452)
T ss_pred             CCCCCC--------EEEcHHHHHh-hhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC-ccccccCHHHHHH
Confidence            332111        1222222222 22347899999999999999999999999999999998 5777655555433

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.78  E-value=3.5e-19  Score=161.55  Aligned_cols=201  Identities=18%  Similarity=0.163  Sum_probs=123.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .+++|||||||++|+.+|+.|...+++|+|||+++..-       |..+               .+.......+.+++..
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~---------------l~~~~~g~~~~~~~~~   66 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPL---------------LPQTTTGTLEFRSICE   66 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhh---------------HHHhcccCCChHHhHH
Confidence            46799999999999999999987789999999887421       1100               0000011122334444


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeec-----CCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcc
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL-----LSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLC  160 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~  160 (303)
                      .+...++.++..   ....+|++|+.++  ..+.+...+.     .++    .+ +.||+||+|||  +.|..|.+||.+
T Consensus        67 ~~~~~~~~~~~~---~i~~~V~~Id~~~--~~v~~~~~~~~~~~~~~g----~~-i~yD~LViAtG--s~~~~~~ipG~~  134 (424)
T PTZ00318         67 PVRPALAKLPNR---YLRAVVYDVDFEE--KRVKCGVVSKSNNANVNT----FS-VPYDKLVVAHG--ARPNTFNIPGVE  134 (424)
T ss_pred             HHHHHhccCCeE---EEEEEEEEEEcCC--CEEEEecccccccccCCc----eE-ecCCEEEECCC--cccCCCCCCCHH
Confidence            455555555543   4567899998765  4444422111     111    57 89999999999  777888888865


Q ss_pred             ccccCCCCCccEEecccC----------C---CC---CCCCCCeEEEECCCccHHHHHHHHhhc--------------cC
Q 022090          161 SFCSSATGTGEVIHSTQY----------K---NG---KPYGGKNVLVVGSGNSGMEIALDLANH--------------AA  210 (303)
Q Consensus       161 ~~~~~~~~~g~~~~~~~~----------~---~~---~~~~~~~v~ViG~G~~g~e~a~~l~~~--------------g~  210 (303)
                      ...  ...+. +-+....          .   ..   .....++++|||+|.+|+|+|..|++.              +.
T Consensus       135 e~~--~~~~~-~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~  211 (424)
T PTZ00318        135 ERA--FFLKE-VNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEEC  211 (424)
T ss_pred             HcC--CCCCC-HHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccC
Confidence            320  00000 0000000          0   00   011235899999999999999999863              67


Q ss_pred             ceEEEeecCeeeeehhhHHHHHHHHhhCCHHHHH
Q 022090          211 KTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVD  244 (303)
Q Consensus       211 ~vt~~~r~~~~~lp~~~~~~~~~~~~~l~~~~~~  244 (303)
                      +||++++.+ .++|..+..++..+.+.|....++
T Consensus       212 ~Vtlv~~~~-~ll~~~~~~~~~~~~~~L~~~gV~  244 (424)
T PTZ00318        212 KVTVLEAGS-EVLGSFDQALRKYGQRRLRRLGVD  244 (424)
T ss_pred             EEEEEcCCC-cccccCCHHHHHHHHHHHHHCCCE
Confidence            899999998 777766555555555544443343

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.78  E-value=1.4e-18  Score=164.92  Aligned_cols=171  Identities=18%  Similarity=0.251  Sum_probs=117.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..++|+|||||++|+++|..|++.|++|++||+.+.+||.|...               ++.         +....++.+
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------------ip~---------~~~~~~~~~  247 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------------IPR---------FRLPESVID  247 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------------CCC---------CCCCHHHHH
Confidence            34799999999999999999999999999999999999987532               111         111234555


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      +..+.+..++++.  ++++.+. .         .+...+        .. ..||.||+|||+. .+..+++||.+.    
T Consensus       248 ~~~~~l~~~Gv~i--~~~~~v~-~---------dv~~~~--------~~-~~~DaVilAtGa~-~~~~~~ipG~~~----  301 (652)
T PRK12814        248 ADIAPLRAMGAEF--RFNTVFG-R---------DITLEE--------LQ-KEFDAVLLAVGAQ-KASKMGIPGEEL----  301 (652)
T ss_pred             HHHHHHHHcCCEE--EeCCccc-C---------ccCHHH--------HH-hhcCEEEEEcCCC-CCCCCCCCCcCc----
Confidence            6666667777654  6666441 1         111221        22 4589999999952 234567888653    


Q ss_pred             CCCCccEEecccCC-----CCCCCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecCeeeeehhhHHH
Q 022090          166 ATGTGEVIHSTQYK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMVYL  230 (303)
Q Consensus       166 ~~~~g~~~~~~~~~-----~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~~~~lp~~~~~~  230 (303)
                         .+ ++...++.     ......+++|+|||+|++|+|+|..+.+.|. +||+++|++...||....++
T Consensus       302 ---~g-v~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei  368 (652)
T PRK12814        302 ---PG-VISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEI  368 (652)
T ss_pred             ---CC-cEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH
Confidence               22 22222221     1123468999999999999999999999986 59999999855677654433

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.78  E-value=3.2e-18  Score=155.57  Aligned_cols=166  Identities=19%  Similarity=0.160  Sum_probs=111.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhh--CCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSL--QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~--~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (303)
                      .+++|+||||||||+++|..|++  .|++|+|||+.+.+||.+++..-                       |.++....+
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gva-----------------------P~~~~~k~v   81 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVA-----------------------PDHPETKNV   81 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccC-----------------------CCcchhHHH
Confidence            35789999999999999999987  69999999999999987664310                       222333456


Q ss_pred             HHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022090           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (303)
Q Consensus        84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~  163 (303)
                      ...+.+.++..++.+  +.+..+.          ..+...+        -. ..||.||+|||+. .++.+.+||.+.  
T Consensus        82 ~~~~~~~~~~~~v~~--~~nv~vg----------~dvtl~~--------L~-~~yDaVIlAtGa~-~~~~l~IpG~d~--  137 (491)
T PLN02852         82 TNQFSRVATDDRVSF--FGNVTLG----------RDVSLSE--------LR-DLYHVVVLAYGAE-SDRRLGIPGEDL--  137 (491)
T ss_pred             HHHHHHHHHHCCeEE--EcCEEEC----------ccccHHH--------Hh-hhCCEEEEecCCC-CCCCCCCCCCCC--
Confidence            666666666655543  5554441          1122222        23 4689999999952 235667888653  


Q ss_pred             cCCCCCccEEecccCC----------C--CCCCCCCeEEEECCCccHHHHHHHHhhc--------------------c-C
Q 022090          164 SSATGTGEVIHSTQYK----------N--GKPYGGKNVLVVGSGNSGMEIALDLANH--------------------A-A  210 (303)
Q Consensus       164 ~~~~~~g~~~~~~~~~----------~--~~~~~~~~v~ViG~G~~g~e~a~~l~~~--------------------g-~  210 (303)
                           .| ++...++.          .  .....+++++|||+|++|+|+|..|.+.                    + .
T Consensus       138 -----~g-V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~  211 (491)
T PLN02852        138 -----PG-VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVR  211 (491)
T ss_pred             -----CC-eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCC
Confidence                 22 22222221          0  0123579999999999999999998875                    4 4


Q ss_pred             ceEEEeecCeeeee
Q 022090          211 KTSLVVRSPVHVLS  224 (303)
Q Consensus       211 ~vt~~~r~~~~~lp  224 (303)
                      +|+++.|+...-++
T Consensus       212 ~V~iv~RRg~~~~~  225 (491)
T PLN02852        212 KVYLVGRRGPVQAA  225 (491)
T ss_pred             EEEEEEcCChHhCC
Confidence            69999999843333

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=2.4e-18  Score=144.23  Aligned_cols=177  Identities=19%  Similarity=0.296  Sum_probs=138.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..|||+||||||+|-++|...+++|++.-++-  ..+||+-..    .+.+.      .|-..       .+....++..
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvld----T~~IE------NfIsv-------~~teGpkl~~  270 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLD----TMGIE------NFISV-------PETEGPKLAA  270 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeecc----ccchh------heecc-------ccccchHHHH
Confidence            46899999999999999999999999886553  235554221    11110      00111       1234568899


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCC-CCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEA-TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~  164 (303)
                      .+.+.+++|.++.  ....+.+.+.+... ++-..|++.++       .. ++++.+|++||..|+  -.++||.+.|  
T Consensus       271 ale~Hv~~Y~vDi--mn~qra~~l~~a~~~~~l~ev~l~nG-------av-LkaktvIlstGArWR--n~nvPGE~e~--  336 (520)
T COG3634         271 ALEAHVKQYDVDV--MNLQRASKLEPAAVEGGLIEVELANG-------AV-LKARTVILATGARWR--NMNVPGEDEY--  336 (520)
T ss_pred             HHHHHHhhcCchh--hhhhhhhcceecCCCCccEEEEecCC-------ce-eccceEEEecCcchh--cCCCCchHHH--
Confidence            9999999999876  66677788877432 34678888886       56 899999999996554  4589999998  


Q ss_pred             CCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       165 ~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                          +..-..+|-.++...+++|+|+|||+|+||+|.|-+|+....+||+++-.+
T Consensus       337 ----rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~  387 (520)
T COG3634         337 ----RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP  387 (520)
T ss_pred             ----hhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence                888788899999999999999999999999999999999999999998776

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.77  E-value=2.6e-18  Score=169.10  Aligned_cols=168  Identities=18%  Similarity=0.219  Sum_probs=117.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .++|+|||||||||++|..|+++|++|+|||+.+.+||..++.               +         +.+....++.+.
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g---------------i---------p~~rl~~e~~~~  485 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG---------------I---------PSFRLPRDIIDR  485 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc---------------C---------CccCCCHHHHHH
Confidence            5799999999999999999999999999999999888764321               1         122223466677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~  166 (303)
                      ..+.++.+|++.  ++++.+.        ..  +...+..      .. ..||.||+|||+ ..|+.+++||.+.     
T Consensus       486 ~~~~l~~~Gv~~--~~~~~vg--------~~--~~~~~l~------~~-~~yDaViIATGa-~~pr~l~IpG~~l-----  540 (1006)
T PRK12775        486 EVQRLVDIGVKI--ETNKVIG--------KT--FTVPQLM------ND-KGFDAVFLGVGA-GAPTFLGIPGEFA-----  540 (1006)
T ss_pred             HHHHHHHCCCEE--EeCCccC--------Cc--cCHHHHh------hc-cCCCEEEEecCC-CCCCCCCCCCcCC-----
Confidence            777777788665  7775431        11  1111110      13 468999999995 2577888998642     


Q ss_pred             CCCccEEecccCC--------------CCCCCCCCeEEEECCCccHHHHHHHHhhccCc-eEEEeecCeeeeehh
Q 022090          167 TGTGEVIHSTQYK--------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSPVHVLSRE  226 (303)
Q Consensus       167 ~~~g~~~~~~~~~--------------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-vt~~~r~~~~~lp~~  226 (303)
                        .| +++..++.              +.....+++|+|||+|++|+|+|..+.++|.+ |++++|+....+|..
T Consensus       541 --~g-V~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~  612 (1006)
T PRK12775        541 --GQ-VYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPAR  612 (1006)
T ss_pred             --CC-cEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCC
Confidence              22 33333221              11234689999999999999999999999875 899988775555544

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.77  E-value=5.9e-18  Score=150.03  Aligned_cols=175  Identities=20%  Similarity=0.231  Sum_probs=112.9

Q ss_pred             CCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHH
Q 022090            4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (303)
Q Consensus         4 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (303)
                      +...++|+|||+|++|+++|..|++.|++|+++|+.+.+||.+... +              +..        ..+.+.+
T Consensus        15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~-~--------------~~~--------~~~~~~~   71 (352)
T PRK12770         15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG-I--------------PEF--------RIPIERV   71 (352)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec-C--------------ccc--------ccCHHHH
Confidence            3346799999999999999999999999999999998888765321 0              000        0122334


Q ss_pred             HHHHHHHHHHcCCCceeEeCeEEEEEEE--eCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccc
Q 022090           84 IEHLDHYVSHFNIGPSIRYQRSVESASY--DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS  161 (303)
Q Consensus        84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~--~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~  161 (303)
                      ......+. +.++..  +.++.+..+..  ....+.+.......     +... +.||+||+|||+ ..|..|++||.+.
T Consensus        72 ~~~~~~l~-~~~i~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~d~lviAtGs-~~~~~~~ipg~~~  141 (352)
T PRK12770         72 REGVKELE-EAGVVF--HTRTKVCCGEPLHEEEGDEFVERIVSL-----EELV-KKYDAVLIATGT-WKSRKLGIPGEDL  141 (352)
T ss_pred             HHHHHHHH-hCCeEE--ecCcEEeeccccccccccccccccCCH-----HHHH-hhCCEEEEEeCC-CCCCcCCCCCccc
Confidence            44444443 346544  77777765532  11112232221111     1134 689999999994 2467788888653


Q ss_pred             cccCCCCCccEEeccc--------------CCCCCCCCCCeEEEECCCccHHHHHHHHhhccCc-eEEEeecC
Q 022090          162 FCSSATGTGEVIHSTQ--------------YKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSP  219 (303)
Q Consensus       162 ~~~~~~~~g~~~~~~~--------------~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-vt~~~r~~  219 (303)
                             .+ ++.+.+              ........+++++|||+|.+|+|+|..|...|.+ ||++.|++
T Consensus       142 -------~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        142 -------PG-VYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             -------cC-ceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence                   11 122110              0011123478999999999999999999999987 99999876

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.76  E-value=7.1e-18  Score=163.48  Aligned_cols=168  Identities=21%  Similarity=0.280  Sum_probs=110.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .++|+||||||||++||..|++.|++|+|||+.+.+||...+.               ++.+         ....++.++
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~---------------IP~~---------rlp~e~l~~  592 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI---------------IPEF---------RISAESIQK  592 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec---------------cccc---------CCCHHHHHH
Confidence            4799999999999999999999999999999999988875321               1111         111244455


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~  166 (303)
                      ..+.+..+++++  ++++..          ...  ....       .. ..||+||+|||+. .+..+.++|....    
T Consensus       593 ~ie~l~~~GVe~--~~g~~~----------d~~--ve~l-------~~-~gYDaVIIATGA~-~~~~l~I~G~~~~----  645 (1012)
T TIGR03315       593 DIELVKFHGVEF--KYGCSP----------DLT--VAEL-------KN-QGYKYVILAIGAW-KHGPLRLEGGGER----  645 (1012)
T ss_pred             HHHHHHhcCcEE--EEeccc----------ceE--hhhh-------hc-ccccEEEECCCCC-CCCCCCcCCCCcc----
Confidence            555556666544  554210          011  1111       23 5689999999952 2344466664321    


Q ss_pred             CCCccEEecccCCC------CCCCCCCeEEEECCCccHHHHHHHHhhc-cC-ceEEEeecCeeeeehhhHHH
Q 022090          167 TGTGEVIHSTQYKN------GKPYGGKNVLVVGSGNSGMEIALDLANH-AA-KTSLVVRSPVHVLSREMVYL  230 (303)
Q Consensus       167 ~~~g~~~~~~~~~~------~~~~~~~~v~ViG~G~~g~e~a~~l~~~-g~-~vt~~~r~~~~~lp~~~~~~  230 (303)
                           ++...++..      .....+++|+|||+|++|+|+|..+.+. |. +|++++|++...+|....++
T Consensus       646 -----v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl  712 (1012)
T TIGR03315       646 -----VLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREEL  712 (1012)
T ss_pred             -----eeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHH
Confidence                 222222211      1223589999999999999999999887 64 79999998856667655443

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.74  E-value=3.2e-17  Score=156.20  Aligned_cols=169  Identities=17%  Similarity=0.221  Sum_probs=114.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..++|+|||||++||++|..|++.|++|+|||+.+.+||.+.+.               ++         .+....++.+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g---------------ip---------~~~l~~~~~~  381 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG---------------IP---------AFKLDKSLLA  381 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec---------------CC---------CccCCHHHHH
Confidence            35799999999999999999999999999999999999876532               11         1111234555


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      +..+.++.+|++.  ++++.|..          .+...+        .. ..||.||+|||+. .+..+.++|.+.    
T Consensus       382 ~~~~~~~~~Gv~~--~~~~~v~~----------~i~~~~--------~~-~~~DavilAtGa~-~~~~l~i~g~~~----  435 (654)
T PRK12769        382 RRREIFSAMGIEF--ELNCEVGK----------DISLES--------LL-EDYDAVFVGVGTY-RSMKAGLPNEDA----  435 (654)
T ss_pred             HHHHHHHHCCeEE--ECCCEeCC----------cCCHHH--------HH-hcCCEEEEeCCCC-CCCCCCCCCCCC----
Confidence            5566677777655  77775521          011111        22 4689999999963 334456666542    


Q ss_pred             CCCCccEEec--------------ccCCC--CCCCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecCeeeeehhhH
Q 022090          166 ATGTGEVIHS--------------TQYKN--GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       166 ~~~~g~~~~~--------------~~~~~--~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~~~~lp~~~~  228 (303)
                         .|. ++.              .....  .....+++|+|||+|.+|+|+|..+.++|. +||+++|++...+|....
T Consensus       436 ---~Gv-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~  511 (654)
T PRK12769        436 ---PGV-YDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKK  511 (654)
T ss_pred             ---CCe-EEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHH
Confidence               221 111              00100  012457899999999999999999999986 699999987555665443

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.73  E-value=8.5e-17  Score=147.36  Aligned_cols=169  Identities=17%  Similarity=0.230  Sum_probs=115.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..++|+|||+|++|+++|..|++.|++|+++|+.+.+||.+...               ++.         +....++.+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g---------------ip~---------~~~~~~~~~  195 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG---------------IPS---------FKLDKAVLS  195 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec---------------Ccc---------ccCCHHHHH
Confidence            45799999999999999999999999999999999998876532               111         111235666


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      +..+.++.+|++.  ++++.+...          +...+        .. ..||.||+|||+.. +..+++||.+.    
T Consensus       196 ~~~~~~~~~Gv~~--~~~~~v~~~----------~~~~~--------~~-~~~D~vilAtGa~~-~~~~~i~g~~~----  249 (467)
T TIGR01318       196 RRREIFTAMGIEF--HLNCEVGRD----------ISLDD--------LL-EDYDAVFLGVGTYR-SMRGGLPGEDA----  249 (467)
T ss_pred             HHHHHHHHCCCEE--ECCCEeCCc----------cCHHH--------HH-hcCCEEEEEeCCCC-CCcCCCCCcCC----
Confidence            6777778888765  777766210          11111        23 46899999999422 23456777543    


Q ss_pred             CCCCccEEeccc-----------CC-----CCCCCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecCeeeeehhhH
Q 022090          166 ATGTGEVIHSTQ-----------YK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       166 ~~~~g~~~~~~~-----------~~-----~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~~~~lp~~~~  228 (303)
                         .| +++..+           ..     ......+++++|||+|++|+|+|..+.++|. +||+++|++...+|....
T Consensus       250 ---~g-V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~  325 (467)
T TIGR01318       250 ---PG-VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRR  325 (467)
T ss_pred             ---CC-cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHH
Confidence               22 121110           00     0012357999999999999999999999985 799999988556665543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.73  E-value=2.3e-17  Score=151.54  Aligned_cols=158  Identities=22%  Similarity=0.249  Sum_probs=106.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .++|+|||||++|+++|..|++.|++|+|||+.+.+||.+...               ++         .+....++...
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip---------~~~~~~~~~~~  198 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG---------------IP---------DFKLEKEVIDR  198 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec---------------CC---------cccCCHHHHHH
Confidence            4799999999999999999999999999999999988876432               11         11112345555


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~  166 (303)
                      ..+.+..++++.  ++++.+.. +         +....        .. ..||.||+|||+. .|..+.+||.+.     
T Consensus       199 ~~~~~~~~gv~~--~~~~~v~~-~---------~~~~~--------~~-~~~d~vvlAtGa~-~~~~l~ipG~~~-----  251 (471)
T PRK12810        199 RIELMEAEGIEF--RTNVEVGK-D---------ITAEE--------LL-AEYDAVFLGTGAY-KPRDLGIPGRDL-----  251 (471)
T ss_pred             HHHHHHhCCcEE--EeCCEECC-c---------CCHHH--------HH-hhCCEEEEecCCC-CCCcCCCCCccC-----
Confidence            556667777655  77765521 0         00111        23 5789999999942 366677888643     


Q ss_pred             CCCccEEeccc-------------CCCCCCCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeec
Q 022090          167 TGTGEVIHSTQ-------------YKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRS  218 (303)
Q Consensus       167 ~~~g~~~~~~~-------------~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~  218 (303)
                        .| +.+..+             ........+++|+|||+|++|+|+|..+.+.|. +||...+.
T Consensus       252 --~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~  314 (471)
T PRK12810        252 --DG-VHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM  314 (471)
T ss_pred             --CC-cEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence              22 222111             011123468999999999999999999888886 68855433

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.72  E-value=2.3e-16  Score=135.52  Aligned_cols=204  Identities=25%  Similarity=0.370  Sum_probs=138.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCC-CCeEEEecCCCCCCccCcCCC-CceEEecC--cccc-------cCCCCC-----
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKKYSY-DRLRLHLA--KQFC-------QLPHLP-----   69 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~~~gg~w~~~~~-~~~~~~~~--~~~~-------~~~~~~-----   69 (303)
                      ...|++.||-||+-|++|..|.+.+ .++..+||.+..  .|+..+. ++..+..+  +.+.       .|+++.     
T Consensus         4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h   81 (436)
T COG3486           4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH   81 (436)
T ss_pred             cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence            4689999999999999999999985 789999998865  3765421 22211111  0110       000000     


Q ss_pred             -----CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEc
Q 022090           70 -----FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA  144 (303)
Q Consensus        70 -----~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlA  144 (303)
                           +-.....++++.++.+|++|.+.++. ..  +|+++|+.|...+.+....+.....+.     .. +.|+.||++
T Consensus        82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~-~~--rfg~~V~~i~~~~~d~~~~~~~~t~~~-----~~-y~ar~lVlg  152 (436)
T COG3486          82 GRLYEFLNYETFHIPRREYNDYCQWAASQLP-SL--RFGEEVTDISSLDGDAVVRLFVVTANG-----TV-YRARNLVLG  152 (436)
T ss_pred             chHhhhhhhhcccccHHHHHHHHHHHHhhCC-cc--ccCCeeccccccCCcceeEEEEEcCCC-----cE-EEeeeEEEc
Confidence                 00011356789999999999999883 33  999999977443333334422222211     47 899999999


Q ss_pred             cCCCCCCCCCC-CCCccccccCCCCCccEEecccCCCCC-CCCCC-eEEEECCCccHHHHHHHHhhc----cCceEEEee
Q 022090          145 SGETTNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGK-PYGGK-NVLVVGSGNSGMEIALDLANH----AAKTSLVVR  217 (303)
Q Consensus       145 tG~~~~p~~p~-~~g~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~-~v~ViG~G~~g~e~a~~l~~~----g~~vt~~~r  217 (303)
                      +|  ..|.+|+ +..+.        ..+++|++++.... ....+ .|.|||+|.||+|+..+|...    ..++.|+.|
T Consensus       153 ~G--~~P~IP~~f~~l~--------~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR  222 (436)
T COG3486         153 VG--TQPYIPPCFRSLI--------GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITR  222 (436)
T ss_pred             cC--CCcCCChHHhCcC--------ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeec
Confidence            99  8899885 33222        33689999997532 33344 499999999999999999875    245889999


Q ss_pred             cCeeeeehhhHHHH
Q 022090          218 SPVHVLSREMVYLG  231 (303)
Q Consensus       218 ~~~~~lp~~~~~~~  231 (303)
                      ++ ..+|.+..+++
T Consensus       223 ~~-gf~p~d~Skf~  235 (436)
T COG3486         223 SS-GFLPMDYSKFG  235 (436)
T ss_pred             cC-CCCccccchhh
Confidence            98 78887665443

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.71  E-value=6.4e-17  Score=144.25  Aligned_cols=181  Identities=16%  Similarity=0.228  Sum_probs=114.9

Q ss_pred             cEEEECCcHHHHHHHHHHhhC---CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            9 EVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      +|+|||||++|+.+|.+|+++   +.+|+|+|+++..-       |...               .+.......+.+++..
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~---------------~~~~~~g~~~~~~~~~   58 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGM---------------LPGMIAGHYSLDEIRI   58 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccch---------------hhHHHheeCCHHHhcc
Confidence            589999999999999999644   68999999887521       1110               0000011122345555


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      .+.+++++++++.  . ..+|++++.+.    ..|.+.++       .+ +.||+||+|||  +.|..|.+||....   
T Consensus        59 ~~~~~~~~~gv~~--~-~~~v~~id~~~----~~V~~~~g-------~~-~~yD~LviAtG--~~~~~~~i~g~~~~---  118 (364)
T TIGR03169        59 DLRRLARQAGARF--V-IAEATGIDPDR----RKVLLANR-------PP-LSYDVLSLDVG--STTPLSGVEGAADL---  118 (364)
T ss_pred             cHHHHHHhcCCEE--E-EEEEEEEeccc----CEEEECCC-------Cc-ccccEEEEccC--CCCCCCCCCccccc---
Confidence            5666777777653  4 35788998765    35776654       46 89999999999  78888888885332   


Q ss_pred             CCCCccEEe---ccc----CCCC--CCCCCCeEEEECCCccHHHHHHHHhhc----c--CceEEEeecCeeeeehhhHHH
Q 022090          166 ATGTGEVIH---STQ----YKNG--KPYGGKNVLVVGSGNSGMEIALDLANH----A--AKTSLVVRSPVHVLSREMVYL  230 (303)
Q Consensus       166 ~~~~g~~~~---~~~----~~~~--~~~~~~~v~ViG~G~~g~e~a~~l~~~----g--~~vt~~~r~~~~~lp~~~~~~  230 (303)
                         .-....   ...    +...  ....+++++|||+|.+|+|+|..|++.    |  .+|+++ +.+ .+++.....+
T Consensus       119 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~-~~l~~~~~~~  193 (364)
T TIGR03169       119 ---AVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA-SLLPGFPAKV  193 (364)
T ss_pred             ---ccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC-cccccCCHHH
Confidence               000000   000    1000  012357999999999999999999863    3  479998 555 5666544444


Q ss_pred             HHHHHh
Q 022090          231 GVVLFK  236 (303)
Q Consensus       231 ~~~~~~  236 (303)
                      ...+.+
T Consensus       194 ~~~~~~  199 (364)
T TIGR03169       194 RRLVLR  199 (364)
T ss_pred             HHHHHH
Confidence            444333

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.70  E-value=2.2e-16  Score=149.94  Aligned_cols=169  Identities=15%  Similarity=0.193  Sum_probs=115.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..++|+|||+|++|+++|..|++.|++|++||+.+.+||.|.+..               +.+.        .+ .++.+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gi---------------p~~~--------l~-~~~~~  364 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGI---------------PPFK--------LD-KTVLS  364 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccC---------------Cccc--------CC-HHHHH
Confidence            358999999999999999999999999999999999999876431               1111        11 34555


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      ...+.++.+|++.  ++++.+..          .+.+.+        .. ..||.||+|||+. .+..+.+||.+.    
T Consensus       365 ~~~~~~~~~Gv~~--~~~~~v~~----------~~~~~~--------l~-~~~DaV~latGa~-~~~~~~i~g~~~----  418 (639)
T PRK12809        365 QRREIFTAMGIDF--HLNCEIGR----------DITFSD--------LT-SEYDAVFIGVGTY-GMMRADLPHEDA----  418 (639)
T ss_pred             HHHHHHHHCCeEE--EcCCccCC----------cCCHHH--------HH-hcCCEEEEeCCCC-CCCCCCCCCCcc----
Confidence            5666777778665  77765521          011111        23 4689999999963 344556777543    


Q ss_pred             CCCCccEEec-----------ccCCC-----CCCCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecCeeeeehhhH
Q 022090          166 ATGTGEVIHS-----------TQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       166 ~~~~g~~~~~-----------~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~~~~lp~~~~  228 (303)
                         .|. ++.           .....     .....+++++|||+|.+|+|+|..+.++|. +||+++|++...+|....
T Consensus       419 ---~gv-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~  494 (639)
T PRK12809        419 ---PGV-IQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRK  494 (639)
T ss_pred             ---CCc-EeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH
Confidence               232 111           00000     122357999999999999999999888885 799999987555665544

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.68  E-value=1.2e-15  Score=150.88  Aligned_cols=175  Identities=13%  Similarity=0.124  Sum_probs=113.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .+||+|||||||||++|..|++.|.+|+|+|+++.+||.+....         .   ..         + -.+..++...
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---------~---~~---------~-g~~~~~~~~~  220 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---------E---TI---------D-GKPAADWAAA  220 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---------c---cc---------C-CccHHHHHHH
Confidence            57999999999999999999999999999999999998765321         0   00         0 0112234333


Q ss_pred             HHHHHHHcC-CCceeEeCeEEEEEEEeCCCCeEEEEEe--------ecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCC
Q 022090           87 LDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKAS--------NLLSPGREIEEYYSGRFLVVASGETTNPFTPDIR  157 (303)
Q Consensus        87 l~~~~~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~--------~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~  157 (303)
                      +.+.++.++ +..  +.+++|..+....  ....+...        .+... ..... +.++.||+|||  +.++.|++|
T Consensus       221 ~~~~l~~~~~v~v--~~~t~V~~i~~~~--~v~~v~~~~~~~~~~~~~~~~-~~~~~-i~a~~VILATG--a~~r~~pip  292 (985)
T TIGR01372       221 TVAELTAMPEVTL--LPRTTAFGYYDHN--TVGALERVTDHLDAPPKGVPR-ERLWR-IRAKRVVLATG--AHERPLVFA  292 (985)
T ss_pred             HHHHHhcCCCcEE--EcCCEEEEEecCC--eEEEEEEeeeccccccCCccc-cceEE-EEcCEEEEcCC--CCCcCCCCC
Confidence            444444443 443  7788888774321  11111100        00000 01136 89999999999  677788888


Q ss_pred             CccccccCCCCCccEEec---ccCCC-CCCCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecC
Q 022090          158 GLCSFCSSATGTGEVIHS---TQYKN-GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (303)
Q Consensus       158 g~~~~~~~~~~~g~~~~~---~~~~~-~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~  219 (303)
                      |.+.       .|. +..   ..+.. .....+++++|||+|.+|+|+|..|++.|. .|+++++.+
T Consensus       293 G~~~-------pgV-~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~  351 (985)
T TIGR01372       293 NNDR-------PGV-MLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA  351 (985)
T ss_pred             CCCC-------CCc-EEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc
Confidence            8653       232 221   11111 122357999999999999999999999995 578887776

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.67  E-value=5.6e-16  Score=142.57  Aligned_cols=159  Identities=22%  Similarity=0.249  Sum_probs=108.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .++|+|||+|++|+++|..|++.|++|+|||+.+.+||...+.               ++         .+....++..+
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g---------------ip---------~~~~~~~~~~~  198 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG---------------IP---------NMKLDKAIVDR  198 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc---------------CC---------CccCCHHHHHH
Confidence            4799999999999999999999999999999999888764321               11         11111245555


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~  166 (303)
                      ..+.++.++++.  ++++.+.. +         +....        .. ..||.||+|||.. .|..+++||.+.     
T Consensus       199 ~~~~~~~~Gv~~--~~~~~v~~-~---------~~~~~--------~~-~~~d~VilAtGa~-~~~~l~i~G~~~-----  251 (485)
T TIGR01317       199 RIDLLSAEGIDF--VTNTEIGV-D---------ISADE--------LK-EQFDAVVLAGGAT-KPRDLPIPGREL-----  251 (485)
T ss_pred             HHHHHHhCCCEE--ECCCEeCC-c---------cCHHH--------HH-hhCCEEEEccCCC-CCCcCCCCCcCC-----
Confidence            556667677665  77776631 0         11111        23 5789999999942 367788888642     


Q ss_pred             CCCccEEecccC--------C-------CCCCCCCCeEEEECCCccHHHHHHHHhhcc-CceEEEeecC
Q 022090          167 TGTGEVIHSTQY--------K-------NGKPYGGKNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP  219 (303)
Q Consensus       167 ~~~g~~~~~~~~--------~-------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g-~~vt~~~r~~  219 (303)
                        .|. ....++        .       ......+++|+|||+|++|+|+|..+.+.+ .+|+++++.+
T Consensus       252 --~gV-~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~  317 (485)
T TIGR01317       252 --KGI-HYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP  317 (485)
T ss_pred             --CCc-EeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence              221 111100        0       012246799999999999999988888876 4699998877

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.67  E-value=5.2e-16  Score=142.07  Aligned_cols=205  Identities=19%  Similarity=0.188  Sum_probs=153.3

Q ss_pred             CcEEEECCcHHHHHHHHHHhhC---CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      .+++|||.|++|..+...+.+.   -+++++|-..+.+.       |....++.-        +      +.--+.+++.
T Consensus         4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n-------Y~Ri~Ls~v--------l------~~~~~~edi~   62 (793)
T COG1251           4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN-------YNRILLSSV--------L------AGEKTAEDIS   62 (793)
T ss_pred             eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc-------ccceeeccc--------c------CCCccHHHHh
Confidence            5899999999999999999884   46899998887653       655544311        1      1111233444


Q ss_pred             HHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (303)
Q Consensus        85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~  164 (303)
                      -.-..+.++.++..  +.+..|+.|+++.    ..|+++.+       .. +.||.||+|||  |.|.+|++||.+.+  
T Consensus        63 l~~~dwy~~~~i~L--~~~~~v~~idr~~----k~V~t~~g-------~~-~~YDkLilATG--S~pfi~PiPG~~~~--  124 (793)
T COG1251          63 LNRNDWYEENGITL--YTGEKVIQIDRAN----KVVTTDAG-------RT-VSYDKLIIATG--SYPFILPIPGSDLP--  124 (793)
T ss_pred             ccchhhHHHcCcEE--EcCCeeEEeccCc----ceEEccCC-------cE-eecceeEEecC--ccccccCCCCCCCC--
Confidence            44556777777665  9999999998876    66777775       56 89999999999  99999999998754  


Q ss_pred             CCCCCccEEecccCCCC-----CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH-HHHHHHHhhC
Q 022090          165 SATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-YLGVVLFKYV  238 (303)
Q Consensus       165 ~~~~~g~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~-~~~~~~~~~l  238 (303)
                           + ++...++.+-     .....++.+|||+|.-|+|+|..|.+.|-++++++-++ ++|-+..+ ..+..|...+
T Consensus       125 -----~-v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~-~lMerQLD~~ag~lL~~~l  197 (793)
T COG1251         125 -----G-VFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP-TLMERQLDRTAGRLLRRKL  197 (793)
T ss_pred             -----C-eeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc-hHHHHhhhhHHHHHHHHHH
Confidence                 2 2333322221     11124568999999999999999999999999999999 88887766 5556677789


Q ss_pred             CHHHHHHHHHHHHHHHhcCc
Q 022090          239 PFGWVDTLMVMLSRLVYGDL  258 (303)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~  258 (303)
                      +..++++.+.+.+..+.++.
T Consensus       198 e~~Gi~~~l~~~t~ei~g~~  217 (793)
T COG1251         198 EDLGIKVLLEKNTEEIVGED  217 (793)
T ss_pred             HhhcceeecccchhhhhcCc
Confidence            99999988888888887633

>PRK13984 putative oxidoreductase; Provisional

Probab=99.66  E-value=6.3e-16  Score=146.37  Aligned_cols=157  Identities=17%  Similarity=0.246  Sum_probs=106.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..++|+|||+|++|+++|..|+++|++|+|+|+.+..||.+...               ++.         +....++..
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~---------------i~~---------~~~~~~~~~  337 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG---------------IPS---------YRLPDEALD  337 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec---------------CCc---------ccCCHHHHH
Confidence            45789999999999999999999999999999999888765421               111         111134455


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      ...+.++.++++.  ++++.|..    +      +....        .. ..||+||+|||+ ..|+.+++||.+.    
T Consensus       338 ~~~~~~~~~gv~~--~~~~~v~~----~------~~~~~--------~~-~~yD~vilAtGa-~~~r~l~i~G~~~----  391 (604)
T PRK13984        338 KDIAFIEALGVKI--HLNTRVGK----D------IPLEE--------LR-EKHDAVFLSTGF-TLGRSTRIPGTDH----  391 (604)
T ss_pred             HHHHHHHHCCcEE--ECCCEeCC----c------CCHHH--------HH-hcCCEEEEEcCc-CCCccCCCCCcCC----
Confidence            5556667777655  77776621    0      11111        23 578999999995 2356778888653    


Q ss_pred             CCCCccEEecccCCC----------CCCCCCCeEEEECCCccHHHHHHHHhhccC------ceEEEe
Q 022090          166 ATGTGEVIHSTQYKN----------GKPYGGKNVLVVGSGNSGMEIALDLANHAA------KTSLVV  216 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~----------~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~------~vt~~~  216 (303)
                         .+ +++..++..          .....+++|+|||+|.+|+|+|..+.+++.      +|+++.
T Consensus       392 ---~g-v~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~  454 (604)
T PRK13984        392 ---PD-VIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS  454 (604)
T ss_pred             ---cC-eEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence               22 222222211          012246899999999999999999998753      678764

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.66  E-value=2.9e-16  Score=135.25  Aligned_cols=217  Identities=17%  Similarity=0.124  Sum_probs=142.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ++++|+|+|+|.+|.++++.|...-++|+++...+.+-=+|.                      .|...-.-.....+.+
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPL----------------------LpS~~vGTve~rSIvE  111 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPL----------------------LPSTTVGTVELRSIVE  111 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeec----------------------cCCccccceeehhhhh
Confidence            468999999999999999999999999999988775321111                      1111122233446777


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc--
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC--  163 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~--  163 (303)
                      -....++..+-..+ .++.+.+.++++.  ....+.....++.. .+.. +.||+||+|+|  ..++.+.+||....+  
T Consensus       112 PIr~i~r~k~~~~~-y~eAec~~iDp~~--k~V~~~s~t~~~~~-~e~~-i~YDyLViA~G--A~~~TFgipGV~e~~~F  184 (491)
T KOG2495|consen  112 PIRAIARKKNGEVK-YLEAECTKIDPDN--KKVHCRSLTADSSD-KEFV-IGYDYLVIAVG--AEPNTFGIPGVEENAHF  184 (491)
T ss_pred             hHHHHhhccCCCce-EEecccEeecccc--cEEEEeeeccCCCc-ceee-ecccEEEEecc--CCCCCCCCCchhhchhh
Confidence            77777765543332 5667778887765  33333332222211 3357 89999999999  778888899875531  


Q ss_pred             -----cCCCCCccEEecccCCCCC------CCCCCeEEEECCCccHHHHHHHHhhc--------------cCceEEEeec
Q 022090          164 -----SSATGTGEVIHSTQYKNGK------PYGGKNVLVVGSGNSGMEIALDLANH--------------AAKTSLVVRS  218 (303)
Q Consensus       164 -----~~~~~~g~~~~~~~~~~~~------~~~~~~v~ViG~G~~g~e~a~~l~~~--------------g~~vt~~~r~  218 (303)
                           ++++|...++++.+...-.      ..+--+++|||||++|+|+|.+|++.              -.+||+++..
T Consensus       185 LKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~  264 (491)
T KOG2495|consen  185 LKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAA  264 (491)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccc
Confidence                 2223333333322211111      11123699999999999999999864              1379999999


Q ss_pred             CeeeeehhhHHHHHHHHhhCCHHHHHHHHHHHHH
Q 022090          219 PVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSR  252 (303)
Q Consensus       219 ~~~~lp~~~~~~~~~~~~~l~~~~~~~~~~~~~~  252 (303)
                      | .+|+.++.++....++.+....++....++++
T Consensus       265 d-~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk  297 (491)
T KOG2495|consen  265 D-HILNMFDKRLVEYAENQFVRDGIDLDTGTMVK  297 (491)
T ss_pred             h-hHHHHHHHHHHHHHHHHhhhccceeecccEEE
Confidence            9 89999999888877777777666655554443

>PRK09897 hypothetical protein; Provisional

Probab=99.65  E-value=9.5e-15  Score=134.45  Aligned_cols=189  Identities=15%  Similarity=0.182  Sum_probs=114.5

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCC-Cc-cCcCCC-CceEEec-----C---cccccCCCC------
Q 022090            8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYA-SI-WKKYSY-DRLRLHL-----A---KQFCQLPHL------   68 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~g-g~-w~~~~~-~~~~~~~-----~---~~~~~~~~~------   68 (303)
                      ++|+|||||++|+++|.+|.+.+  .+|+|||++..+| |. |....- ..+..+.     +   ..+..+...      
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            58999999999999999998764  5899999988777 43 432110 1111110     0   011111000      


Q ss_pred             ---CC---CCCCCCCCCHHHHHHHHHHHHHH-------cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090           69 ---PF---PSSYPMFVSRAQFIEHLDHYVSH-------FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (303)
Q Consensus        69 ---~~---~~~~~~~~~~~~l~~~l~~~~~~-------~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (303)
                         ..   ......|+++..+.+|+++..+.       .+....++.+++|++++..+  +.|.|.+.++.      .. 
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t~~gg------~~-  152 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLATNQDL------PS-  152 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEECCCC------eE-
Confidence               00   00113567776666666664432       23234456788999998765  56888775431      46 


Q ss_pred             EeeCEEEEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCC--CCCCCCCeEEEECCCccHHHHHHHHhhcc----
Q 022090          136 YSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKN--GKPYGGKNVLVVGSGNSGMEIALDLANHA----  209 (303)
Q Consensus       136 ~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~v~ViG~G~~g~e~a~~l~~~g----  209 (303)
                      +.+|.||+|||+.. |..+  ++...|          + ...|..  .....+.+|+|+|.|.+++|++..|...|    
T Consensus       153 i~aD~VVLAtGh~~-p~~~--~~~~~y----------i-~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~  218 (534)
T PRK09897        153 ETFDLAVIATGHVW-PDEE--EATRTY----------F-PSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFI  218 (534)
T ss_pred             EEcCEEEECCCCCC-CCCC--hhhccc----------c-CCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCcee
Confidence            79999999999632 2211  111112          1 111111  01223689999999999999999998663    


Q ss_pred             -----------------CceEEEeecC
Q 022090          210 -----------------AKTSLVVRSP  219 (303)
Q Consensus       210 -----------------~~vt~~~r~~  219 (303)
                                       .++++++|+.
T Consensus       219 ~~~~~~~~l~y~~sg~~~~I~a~SRrG  245 (534)
T PRK09897        219 EDDKQHVVFHRDNASEKLNITLMSRTG  245 (534)
T ss_pred             ccCCCcceeeecCCCCCceEEEEeCCC
Confidence                             2688999987

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=99.64  E-value=2.8e-15  Score=131.32  Aligned_cols=194  Identities=23%  Similarity=0.254  Sum_probs=134.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      ...++|||+|++|..|+..+.+.|.  +++++.+...+.       |...++.....  +              ....+.
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p-------ydr~~Ls~~~~--~--------------~~~~~a  130 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP-------YDRARLSKFLL--T--------------VGEGLA  130 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc-------ccchhccccee--e--------------cccccc
Confidence            3579999999999999999999986  788887666532       33322111000  0              011222


Q ss_pred             HHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (303)
Q Consensus        85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~  164 (303)
                      ....++.+.++++.  ++++.|+.++...    .+|.+.++       +. ++|+++++|||  +.+++|++||.+..  
T Consensus       131 ~r~~e~Yke~gIe~--~~~t~v~~~D~~~----K~l~~~~G-------e~-~kys~LilATG--s~~~~l~~pG~~~~--  192 (478)
T KOG1336|consen  131 KRTPEFYKEKGIEL--ILGTSVVKADLAS----KTLVLGNG-------ET-LKYSKLIIATG--SSAKTLDIPGVELK--  192 (478)
T ss_pred             ccChhhHhhcCceE--EEcceeEEeeccc----cEEEeCCC-------ce-eecceEEEeec--CccccCCCCCcccc--
Confidence            22334566678777  9999999998876    66777776       67 89999999999  68889999997632  


Q ss_pred             CCCCCccEEecccCCCC-----CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH-HHHHHHHhhC
Q 022090          165 SATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-YLGVVLFKYV  238 (303)
Q Consensus       165 ~~~~~g~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~-~~~~~~~~~l  238 (303)
                            .+....+..+.     ......+|+++|+|..|+|+|..|...+.+||++++.+ |.+|+... .+++.+...+
T Consensus       193 ------nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~-~~~~~lf~~~i~~~~~~y~  265 (478)
T KOG1336|consen  193 ------NVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP-WLLPRLFGPSIGQFYEDYY  265 (478)
T ss_pred             ------ceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc-cchhhhhhHHHHHHHHHHH
Confidence                  12222222211     11236789999999999999999999999999999999 99997433 5555555555


Q ss_pred             CHHHHHHHHH
Q 022090          239 PFGWVDTLMV  248 (303)
Q Consensus       239 ~~~~~~~~~~  248 (303)
                      .+..++..+.
T Consensus       266 e~kgVk~~~~  275 (478)
T KOG1336|consen  266 ENKGVKFYLG  275 (478)
T ss_pred             HhcCeEEEEe
Confidence            5555444333

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.61  E-value=4.9e-15  Score=139.09  Aligned_cols=168  Identities=20%  Similarity=0.262  Sum_probs=110.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..++|+|||+|++||++|..|++.|++|+++|+.+.+||.+.+.               ++.+.         -..++.+
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~~---------~~~~~~~  191 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG---------------IPAYR---------LPREVLD  191 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------CCCcc---------CCHHHHH
Confidence            45789999999999999999999999999999999999876532               11111         1124444


Q ss_pred             HHHHHHHHcCCCceeEeCeEE-EEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090           86 HLDHYVSHFNIGPSIRYQRSV-ESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~  164 (303)
                      ...+.+..++++.  ++++.+ .++..+           .        .. ..||.||+|||... +....+++.+.   
T Consensus       192 ~~l~~~~~~Gv~~--~~~~~~~~~~~~~-----------~--------~~-~~~D~Vi~AtG~~~-~~~~~i~g~~~---  245 (564)
T PRK12771        192 AEIQRILDLGVEV--RLGVRVGEDITLE-----------Q--------LE-GEFDAVFVAIGAQL-GKRLPIPGEDA---  245 (564)
T ss_pred             HHHHHHHHCCCEE--EeCCEECCcCCHH-----------H--------HH-hhCCEEEEeeCCCC-CCcCCCCCCcc---
Confidence            4455566677554  666544 221110           0        12 35799999999532 23345666432   


Q ss_pred             CCCCCccEEecccCC-----CCCCCCCCeEEEECCCccHHHHHHHHhhcc-CceEEEeecCeeeeehhhH
Q 022090          165 SATGTGEVIHSTQYK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       165 ~~~~~g~~~~~~~~~-----~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g-~~vt~~~r~~~~~lp~~~~  228 (303)
                          .|. ++...+.     ......+++++|||+|.+|+|++..+.+++ .+|++++|.+...+|....
T Consensus       246 ----~gv-~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~  310 (564)
T PRK12771        246 ----AGV-LDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDE  310 (564)
T ss_pred             ----CCc-EEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHH
Confidence                222 2211111     112345799999999999999999999988 6799999987545554433

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.61  E-value=2.1e-15  Score=144.32  Aligned_cols=201  Identities=11%  Similarity=0.123  Sum_probs=111.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-------CCCCceEEe-cCcccccCCCCCCCCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-------YSYDRLRLH-LAKQFCQLPHLPFPSSYPMF   77 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   77 (303)
                      ..++|+||||||||+++|..|++.|++|++||+.+..|+....       ..|..+... .+...-....+..|..   +
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R---~  458 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVR---W  458 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcccc---c
Confidence            4679999999999999999999999999999997655443110       000000000 0000000001111100   0


Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCC
Q 022090           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIR  157 (303)
Q Consensus        78 ~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~  157 (303)
                       + ....+.++... ..+..+.++.+..+   ..       .++.++-       .. ..||.||+|||+ ..|+.+++|
T Consensus       459 -~-k~~l~~i~~il-~~g~~v~~~~gv~l---G~-------dit~edl-------~~-~gyDAV~IATGA-~kpr~L~IP  516 (1028)
T PRK06567        459 -D-KNNLDILRLIL-ERNNNFKYYDGVAL---DF-------NITKEQA-------FD-LGFDHIAFCIGA-GQPKVLDIE  516 (1028)
T ss_pred             -h-HHHHHHHHHHH-hcCCceEEECCeEE---Cc-------cCCHHHH-------hh-cCCCEEEEeCCC-CCCCCCCCC
Confidence             1 12222222222 22333422334332   10       1111111       23 568999999994 267888899


Q ss_pred             CccccccCCCCCccEEecccCCCC-------------CCCCCCeEEEECCCccHHHHHHHHhh---ccCceEEEeecCee
Q 022090          158 GLCSFCSSATGTGEVIHSTQYKNG-------------KPYGGKNVLVVGSGNSGMEIALDLAN---HAAKTSLVVRSPVH  221 (303)
Q Consensus       158 g~~~~~~~~~~~g~~~~~~~~~~~-------------~~~~~~~v~ViG~G~~g~e~a~~l~~---~g~~vt~~~r~~~~  221 (303)
                      |.+.       .| ++...++...             ....+++|+|||||++|+|+|.....   .+.++++....+ .
T Consensus       517 Geda-------~G-V~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~-~  587 (1028)
T PRK06567        517 NFEA-------KG-VKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIE-K  587 (1028)
T ss_pred             CccC-------CC-eEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhh-h
Confidence            8753       22 2333322111             11236899999999999999996654   356677766665 6


Q ss_pred             eeehhhHHHHHHHHhhCCH
Q 022090          222 VLSREMVYLGVVLFKYVPF  240 (303)
Q Consensus       222 ~lp~~~~~~~~~~~~~l~~  240 (303)
                      .+|..+.+++..+...+-.
T Consensus       588 ~~~~~d~eia~~f~~h~r~  606 (1028)
T PRK06567        588 DLTEEDKEIAEEFIAHAKL  606 (1028)
T ss_pred             hcccccHHHHHHHHHHHHh
Confidence            7787777776655554433

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.60  E-value=4e-14  Score=127.15  Aligned_cols=44  Identities=20%  Similarity=0.167  Sum_probs=39.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHh-hCCCCeEEEecCCCCCCccCcC
Q 022090            6 AGVEVIMVGAGTSGLATAACLS-LQSIPYVILERENCYASIWKKY   49 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~-~~g~~v~iie~~~~~gg~w~~~   49 (303)
                      .+++|+||||||||+.+|..|+ +.|++|+|||+.+.+||.+++.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G   82 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG   82 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence            4578999999999999999875 5699999999999999988754

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.56  E-value=3.2e-13  Score=119.32  Aligned_cols=195  Identities=18%  Similarity=0.207  Sum_probs=120.8

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCC---CCeEEEecCCCCCCccCc-CCCCceEEecCccccc-C-CCCC------------
Q 022090            8 VEVIMVGAGTSGLATAACLSLQS---IPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ-L-PHLP------------   69 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g---~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~~-~-~~~~------------   69 (303)
                      ++|+|||+|++|+++|.+|.+.-   ..+.|||+...+|.--.+ ..-+...++.+...+. + ++.|            
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~   81 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ   81 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence            68999999999999999999862   249999999887753322 2122222333322221 1 2211            


Q ss_pred             -------CCCCCCCCCCHHHHHHHHHHHHHHc----CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEee
Q 022090           70 -------FPSSYPMFVSRAQFIEHLDHYVSHF----NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG  138 (303)
Q Consensus        70 -------~~~~~~~~~~~~~l~~~l~~~~~~~----~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a  138 (303)
                             ...+-+.|+++.-+.+|+.++...+    .-....+...+.+++.+.+..+.|.+...++       .. ..|
T Consensus        82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g-------~~-~~a  153 (474)
T COG4529          82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG-------PS-EIA  153 (474)
T ss_pred             ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC-------Ce-eee
Confidence                   1123356788888888887765433    2111124556777777765456777777775       45 689


Q ss_pred             CEEEEccCCCCCCCCCCCCCccccccCCCCCcc-EEecccCCCC---CCCCCCeEEEECCCccHHHHHHHHhhccCc--e
Q 022090          139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTGE-VIHSTQYKNG---KPYGGKNVLVVGSGNSGMEIALDLANHAAK--T  212 (303)
Q Consensus       139 d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~-~~~~~~~~~~---~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~--v  212 (303)
                      |.+|+|||+... ..+. - ...+      .+. -+....|...   ......+|+|+|+|.+-+|....|.++|++  |
T Consensus       154 d~~Vlatgh~~~-~~~~-~-~~~~------~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~I  224 (474)
T COG4529         154 DIIVLATGHSAP-PADP-A-ARDL------KGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPI  224 (474)
T ss_pred             eEEEEeccCCCC-Ccch-h-hhcc------CCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccce
Confidence            999999996332 2222 1 1111      111 1222222211   122356799999999999999999999864  9


Q ss_pred             EEEeecC
Q 022090          213 SLVVRSP  219 (303)
Q Consensus       213 t~~~r~~  219 (303)
                      |++.|+.
T Consensus       225 t~iSRrG  231 (474)
T COG4529         225 TAISRRG  231 (474)
T ss_pred             EEEeccc
Confidence            9999998

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.55  E-value=2.4e-14  Score=129.12  Aligned_cols=158  Identities=22%  Similarity=0.288  Sum_probs=112.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .++|+||||||+||++|..|+++|++|+++|+.+..||...+.                        .|.|-...++.+.
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG------------------------IP~~kl~k~i~d~  178 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG------------------------IPDFKLPKDILDR  178 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec------------------------CchhhccchHHHH
Confidence            4799999999999999999999999999999999999875543                        1233333477788


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~  166 (303)
                      ..++.++.|+++  +.++++-.          .++.+.        -. -.+|.|++|+|. ..|+..++||.+.     
T Consensus       179 ~i~~l~~~Gv~~--~~~~~vG~----------~it~~~--------L~-~e~Dav~l~~G~-~~~~~l~i~g~d~-----  231 (457)
T COG0493         179 RLELLERSGVEF--KLNVRVGR----------DITLEE--------LL-KEYDAVFLATGA-GKPRPLDIPGEDA-----  231 (457)
T ss_pred             HHHHHHHcCeEE--EEcceECC----------cCCHHH--------HH-HhhCEEEEeccc-cCCCCCCCCCcCC-----
Confidence            888888888554  77776621          122222        12 245999999996 5667677887652     


Q ss_pred             CCCccEEecccC------------C--CCCCCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeec
Q 022090          167 TGTGEVIHSTQY------------K--NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRS  218 (303)
Q Consensus       167 ~~~g~~~~~~~~------------~--~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~  218 (303)
                        .| +....++            .  ......+++++|||+|.|++|++....+.|. +|+.+++.
T Consensus       232 --~g-v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~  295 (457)
T COG0493         232 --KG-VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYRE  295 (457)
T ss_pred             --Cc-chHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccc
Confidence              12 1111111            1  1122245999999999999999999999987 58887543

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.52  E-value=2e-13  Score=116.16  Aligned_cols=149  Identities=21%  Similarity=0.227  Sum_probs=99.2

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHH
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ   82 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (303)
                      ...+.|+|||+||||+.+|..|.++  +++|.|+|+.+.+.|..++..-                       |.++.-..
T Consensus        18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVA-----------------------PDHpEvKn   74 (468)
T KOG1800|consen   18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVA-----------------------PDHPEVKN   74 (468)
T ss_pred             cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccC-----------------------CCCcchhh
Confidence            3456999999999999999999985  6899999999988887665411                       22333344


Q ss_pred             HHHHHHHHHHHcCCCceeEeCeEE-EEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccc
Q 022090           83 FIEHLDHYVSHFNIGPSIRYQRSV-ESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS  161 (303)
Q Consensus        83 l~~~l~~~~~~~~l~~~i~~~~~V-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~  161 (303)
                      +.+.+.+.+++.....  .-|.+| ..           +.++.        -+ -.||.||+|.|+ ..++..+|||.+.
T Consensus        75 vintFt~~aE~~rfsf--~gNv~vG~d-----------vsl~e--------L~-~~ydavvLaYGa-~~dR~L~IPGe~l  131 (468)
T KOG1800|consen   75 VINTFTKTAEHERFSF--FGNVKVGRD-----------VSLKE--------LT-DNYDAVVLAYGA-DGDRRLDIPGEEL  131 (468)
T ss_pred             HHHHHHHHhhccceEE--Eecceeccc-----------ccHHH--------Hh-hcccEEEEEecC-CCCcccCCCCccc
Confidence            5556666666544332  333333 11           22222        23 368999999997 3567788999762


Q ss_pred             cccCCCCCccEEecccCC-----------CCCCCCCCeEEEECCCccHHHHHHHHhh
Q 022090          162 FCSSATGTGEVIHSTQYK-----------NGKPYGGKNVLVVGSGNSGMEIALDLAN  207 (303)
Q Consensus       162 ~~~~~~~~g~~~~~~~~~-----------~~~~~~~~~v~ViG~G~~g~e~a~~l~~  207 (303)
                             .| ++...++.           ...++...+++|||.|++|+|+|+.|..
T Consensus       132 -------~~-V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls  180 (468)
T KOG1800|consen  132 -------SG-VISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLS  180 (468)
T ss_pred             -------cc-ceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhC
Confidence                   22 22222211           1234557899999999999999999764

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.51  E-value=1.5e-13  Score=125.15  Aligned_cols=159  Identities=18%  Similarity=0.324  Sum_probs=100.4

Q ss_pred             HHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCC-CCCHHHHHHH-HHHHHHHcCC
Q 022090           21 ATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQFIEH-LDHYVSHFNI   96 (303)
Q Consensus        21 ~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~-l~~~~~~~~l   96 (303)
                      ++|..|++.  ..+|+|||+++...       |...         .++..     ... .....++..+ ...+.+++++
T Consensus         1 saA~~l~~~~~~~~Vtlid~~~~~~-------~~~~---------~l~~~-----~~g~~~~~~~~~~~~~~~~~~~~gv   59 (427)
T TIGR03385         1 SAASRVRRLDKESDIIVFEKTEDVS-------FANC---------GLPYV-----IGGVIDDRNKLLAYTPEVFIKKRGI   59 (427)
T ss_pred             CHHHHHHhhCCCCcEEEEEcCCcee-------EEcC---------CCCeE-----eccccCCHHHcccCCHHHHHHhcCC
Confidence            367888876  46899999988532       1000         00000     001 1112233333 2345566776


Q ss_pred             CceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEe--eCEEEEccCCCCCCCCCCCCCccccccCCCCCccEEe
Q 022090           97 GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS--GRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIH  174 (303)
Q Consensus        97 ~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~--ad~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~  174 (303)
                      +.  +++++|++++..+    .+|.+.+..++    .. +.  ||+||+|||  +.|..|.+||.+.       . .+++
T Consensus        60 ~~--~~~~~V~~id~~~----~~v~~~~~~~~----~~-~~~~yd~lIiATG--~~p~~~~i~G~~~-------~-~v~~  118 (427)
T TIGR03385        60 DV--KTNHEVIEVNDER----QTVVVRNNKTN----ET-YEESYDYLILSPG--ASPIVPNIEGINL-------D-IVFT  118 (427)
T ss_pred             eE--EecCEEEEEECCC----CEEEEEECCCC----CE-EecCCCEEEECCC--CCCCCCCCCCcCC-------C-CEEE
Confidence            64  7889999998655    34444432211    35 66  999999999  7888888988652       1 1222


Q ss_pred             cccCCCC-------CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeee
Q 022090          175 STQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV  222 (303)
Q Consensus       175 ~~~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~  222 (303)
                      .....+.       ....+++++|||+|.+|+|+|..|.+.|.+||++++.+ .+
T Consensus       119 ~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~  172 (427)
T TIGR03385       119 LRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE-RI  172 (427)
T ss_pred             ECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-cc
Confidence            2221110       01346899999999999999999999999999999988 44

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.50  E-value=8.5e-14  Score=120.06  Aligned_cols=135  Identities=16%  Similarity=0.203  Sum_probs=93.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC--------ccCc---CCCCceEEecC---cc----cccCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--------IWKK---YSYDRLRLHLA---KQ----FCQLPHL   68 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg--------~w~~---~~~~~~~~~~~---~~----~~~~~~~   68 (303)
                      .+||+|||||+||+.||..++++|.+|+|||+.+.+|-        -++.   ..+.....+.|   ..    +..|...
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~   82 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE   82 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence            57999999999999999999999999999999997763        1111   11111111111   00    0001000


Q ss_pred             -----------CCC--CCCCCCC---CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCcee
Q 022090           69 -----------PFP--SSYPMFV---SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI  132 (303)
Q Consensus        69 -----------~~~--~~~~~~~---~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~  132 (303)
                                 ++.  ..-..||   ....+.+.+...+++.++..  +++++|.+++.++  ..+.+.+.++       
T Consensus        83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i--~~~~~v~~v~~~~--~~f~l~t~~g-------  151 (408)
T COG2081          83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTI--RTRSRVSSVEKDD--SGFRLDTSSG-------  151 (408)
T ss_pred             HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEE--EecceEEeEEecC--ceEEEEcCCC-------
Confidence                       000  0001233   46788888888999888776  9999999999886  6788988875       


Q ss_pred             EEEEeeCEEEEccCCCCCCCC
Q 022090          133 EEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus       133 ~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      .+ +.||.||+|||..|.|..
T Consensus       152 ~~-i~~d~lilAtGG~S~P~l  171 (408)
T COG2081         152 ET-VKCDSLILATGGKSWPKL  171 (408)
T ss_pred             CE-EEccEEEEecCCcCCCCC
Confidence            47 899999999998777643

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=99.46  E-value=1.5e-12  Score=101.68  Aligned_cols=126  Identities=20%  Similarity=0.230  Sum_probs=88.9

Q ss_pred             EEECCcHHHHHHHHHHhhC-----CCCeEEEecCCCC-CCccCcCCCCceEEecCcccccC-CCCC--------------
Q 022090           11 IMVGAGTSGLATAACLSLQ-----SIPYVILERENCY-ASIWKKYSYDRLRLHLAKQFCQL-PHLP--------------   69 (303)
Q Consensus        11 vIIGaG~aGl~~A~~l~~~-----g~~v~iie~~~~~-gg~w~~~~~~~~~~~~~~~~~~~-~~~~--------------   69 (303)
                      +|||+|++|++++.+|.++     ..+|+|||+++.. |+.|.....+...++.+...+.. ++.+              
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~   80 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD   80 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence            6999999999999999887     4589999997664 45777654445555555444333 2211              


Q ss_pred             --CCCCCCCCCCHHHHHHHHHHHHHHc------CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEE
Q 022090           70 --FPSSYPMFVSRAQFIEHLDHYVSHF------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL  141 (303)
Q Consensus        70 --~~~~~~~~~~~~~l~~~l~~~~~~~------~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v  141 (303)
                        .......|+++..+.+||.+..+..      ++.+. +...+|++++..+  +.|.|.+.++       .. +.||.|
T Consensus        81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~-~~~~~V~~i~~~~--~~~~v~~~~g-------~~-~~~d~V  149 (156)
T PF13454_consen   81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVR-HVRAEVVDIRRDD--DGYRVVTADG-------QS-IRADAV  149 (156)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEE-EEeeEEEEEEEcC--CcEEEEECCC-------CE-EEeCEE
Confidence              0112346889999999998876653      22221 3467889998876  5588888775       56 899999


Q ss_pred             EEccCC
Q 022090          142 VVASGE  147 (303)
Q Consensus       142 IlAtG~  147 (303)
                      |+|||+
T Consensus       150 vLa~Gh  155 (156)
T PF13454_consen  150 VLATGH  155 (156)
T ss_pred             EECCCC
Confidence            999994

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.43  E-value=9.4e-13  Score=117.82  Aligned_cols=134  Identities=19%  Similarity=0.300  Sum_probs=74.4

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC--------ccCc-C---CCCceEEe---cCccc----ccCC--
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--------IWKK-Y---SYDRLRLH---LAKQF----CQLP--   66 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg--------~w~~-~---~~~~~~~~---~~~~~----~~~~--   66 (303)
                      |||+|||||+|||.||..|++.|.+|+|+|+++.+|-        -++. +   .+......   .+..+    ..|+  
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~   80 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE   80 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence            6999999999999999999999999999999997763        1110 0   00011100   00000    0000  


Q ss_pred             ---------CCCC--CCC---CCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCcee
Q 022090           67 ---------HLPF--PSS---YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI  132 (303)
Q Consensus        67 ---------~~~~--~~~---~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~  132 (303)
                               ..+.  ..+   +|.--...++.+.|.+.+++.+++.  +++++|.++..++ ++.|.|.+++.       
T Consensus        81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i--~~~~~V~~i~~~~-~~~f~v~~~~~-------  150 (409)
T PF03486_consen   81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEI--HFNTRVKSIEKKE-DGVFGVKTKNG-------  150 (409)
T ss_dssp             HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EE--E-S--EEEEEEET-TEEEEEEETTT-------
T ss_pred             HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEE--EeCCEeeeeeecC-CceeEeeccCc-------
Confidence                     0000  000   1122246788899999999888766  9999999998876 34588888432       


Q ss_pred             EEEEeeCEEEEccCCCCCCC
Q 022090          133 EEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus       133 ~~~~~ad~vIlAtG~~~~p~  152 (303)
                      .. +.+|.||+|||..+.|.
T Consensus       151 ~~-~~a~~vILAtGG~S~p~  169 (409)
T PF03486_consen  151 GE-YEADAVILATGGKSYPK  169 (409)
T ss_dssp             EE-EEESEEEE----SSSGG
T ss_pred             cc-ccCCEEEEecCCCCccc
Confidence            67 89999999999766554

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.38  E-value=6.2e-12  Score=108.62  Aligned_cols=128  Identities=16%  Similarity=0.212  Sum_probs=85.1

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCC-----CCc--------------eEEecC-cccccCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS-----YDR--------------LRLHLA-KQFCQLPH   67 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~-----~~~--------------~~~~~~-~~~~~~~~   67 (303)
                      +||+|||||++|+++|..|++.|++|+|+|+....+..|....     ...              ...... ....   .
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~   77 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSV---E   77 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEE---E
Confidence            5999999999999999999999999999999976554322110     000              000000 0000   1


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           68 LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        68 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      .+.+.......++..+.+.+.+.+.+.+++.  +++++|+++..++  +.+.+...++      ..+ +++|+||+|+|.
T Consensus        78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~--~~~~~v~~~~~~~--~~~~~~~~~~------~~~-~~a~~vv~a~G~  146 (295)
T TIGR02032        78 IPIETELAYVIDRDAFDEQLAERAQEAGAEL--RLGTTVLDVEIHD--DRVVVIVRGG------EGT-VTAKIVIGADGS  146 (295)
T ss_pred             eccCCCcEEEEEHHHHHHHHHHHHHHcCCEE--EeCcEEeeEEEeC--CEEEEEEcCc------cEE-EEeCEEEECCCc
Confidence            1111111223568889999999888877665  8999999998766  4455554432      157 899999999997


Q ss_pred             CC
Q 022090          148 TT  149 (303)
Q Consensus       148 ~~  149 (303)
                      ++
T Consensus       147 ~s  148 (295)
T TIGR02032       147 RS  148 (295)
T ss_pred             ch
Confidence            55

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK06847 hypothetical protein; Provisional

Probab=99.35  E-value=7.6e-11  Score=105.58  Aligned_cols=133  Identities=19%  Similarity=0.200  Sum_probs=87.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC----cc--Cc------------------CCCCceEEecCc--
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS----IW--KK------------------YSYDRLRLHLAK--   60 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg----~w--~~------------------~~~~~~~~~~~~--   60 (303)
                      .+||+|||||++|+++|..|++.|++|+|+|+++....    ..  ..                  ............  
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~   83 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT   83 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence            57999999999999999999999999999999764221    00  00                  001111111111  


Q ss_pred             ccccCCCCCC-CCCC--CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEe
Q 022090           61 QFCQLPHLPF-PSSY--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS  137 (303)
Q Consensus        61 ~~~~~~~~~~-~~~~--~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~  137 (303)
                      ....++.... ...+  .....+.++.+++.+.+...++.+  +++++|++++.++  +.+.+.+.++       .+ +.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-~~  151 (375)
T PRK06847         84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADV--RLGTTVTAIEQDD--DGVTVTFSDG-------TT-GR  151 (375)
T ss_pred             EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEE--EeCCEEEEEEEcC--CEEEEEEcCC-------CE-EE
Confidence            0111110000 0011  123567889999999888777655  8999999998755  5577777654       56 89


Q ss_pred             eCEEEEccCCCCCC
Q 022090          138 GRFLVVASGETTNP  151 (303)
Q Consensus       138 ad~vIlAtG~~~~p  151 (303)
                      +|.||.|+|.++..
T Consensus       152 ad~vI~AdG~~s~~  165 (375)
T PRK06847        152 YDLVVGADGLYSKV  165 (375)
T ss_pred             cCEEEECcCCCcch
Confidence            99999999976643

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.34  E-value=3.4e-11  Score=108.32  Aligned_cols=135  Identities=16%  Similarity=0.155  Sum_probs=84.6

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecC-CC---CCCccCc--------------CCCCceEEecCcccccCCCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERE-NC---YASIWKK--------------YSYDRLRLHLAKQFCQLPHLP   69 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~-~~---~gg~w~~--------------~~~~~~~~~~~~~~~~~~~~~   69 (303)
                      +||+||||||+|+++|..|++.|++|+++|+. ..   .|+....              +.+....+..+.........+
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP   80 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence            69999999999999999999999999999997 21   1111100              111222222221100000111


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecC---CCCceeEEEEeeCEEEEccC
Q 022090           70 FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL---SPGREIEEYYSGRFLVVASG  146 (303)
Q Consensus        70 ~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~---~~~~~~~~~~~ad~vIlAtG  146 (303)
                      .+..+....++..+.++|.+.+.+.+.+.  +. ..|+++..++  +.+.+...++.   ++  +..+ +.++.||.|+|
T Consensus        81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v--~~-~~v~~v~~~~--~~~~v~~~~~~~~~~~--~~~~-i~a~~VI~AdG  152 (388)
T TIGR02023        81 SEDGYVGMVRREVFDSYLRERAQKAGAEL--IH-GLFLKLERDR--DGVTLTYRTPKKGAGG--EKGS-VEADVVIGADG  152 (388)
T ss_pred             CCCCceEeeeHHHHHHHHHHHHHhCCCEE--Ee-eEEEEEEEcC--CeEEEEEEeccccCCC--cceE-EEeCEEEECCC
Confidence            11112223688999999999988888764  44 4688887655  56777766421   11  2257 89999999999


Q ss_pred             CCCC
Q 022090          147 ETTN  150 (303)
Q Consensus       147 ~~~~  150 (303)
                      .+|.
T Consensus       153 ~~S~  156 (388)
T TIGR02023       153 ANSP  156 (388)
T ss_pred             CCcH
Confidence            7663

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.33  E-value=1.9e-11  Score=103.25  Aligned_cols=140  Identities=16%  Similarity=0.188  Sum_probs=85.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC-ccCcC-CCCceEEecC-cccccCCCCCCCCCCC--CCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKY-SYDRLRLHLA-KQFCQLPHLPFPSSYP--MFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg-~w~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~   81 (303)
                      .+||+|||||++|+++|..|++.|++|+++|+...+|| .|... .++...+... ..+..--..++.....  ...++.
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~  104 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV  104 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence            57999999999999999999999999999999987765 45322 1222111110 0000000111111101  123577


Q ss_pred             HHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeec----CCCCceeEEEEeeCEEEEccCCCC
Q 022090           82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL----LSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        82 ~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~----~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      ++...|.+.+.+.+...  ++++.|+++..++++..+-+.....    .+..++... +.++.||+|||+++
T Consensus       105 ~l~~~L~~~A~~~Gv~I--~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~-i~Ak~VI~ATG~~a  173 (257)
T PRK04176        105 EAAAKLAAAAIDAGAKI--FNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLT-IEAKAVVDATGHDA  173 (257)
T ss_pred             HHHHHHHHHHHHcCCEE--EcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEE-EEcCEEEEEeCCCc
Confidence            88888888888888665  8899999987655222232332210    000001257 89999999999755

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.33  E-value=4.2e-11  Score=108.88  Aligned_cols=132  Identities=18%  Similarity=0.172  Sum_probs=83.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC-------ccCcC---CCC---------ceEEe------cCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-------IWKKY---SYD---------RLRLH------LAK   60 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg-------~w~~~---~~~---------~~~~~------~~~   60 (303)
                      ..+||+|||||++|+++|..|+++|++|+|+||.+..|.       .+...   .++         .....      ...
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEK   83 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCC
Confidence            458999999999999999999999999999999876542       11110   001         00000      000


Q ss_pred             ccc--cCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEE
Q 022090           61 QFC--QLPHLPF--PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY  136 (303)
Q Consensus        61 ~~~--~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~  136 (303)
                      ...  .+.....  +........+.++.++|.+.+++.|++.  +.+++|+++..++  +.+.+...++       .+ +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--g~v~~v~~~g-------~~-i  151 (428)
T PRK10157         84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQL--ITGIRVDNLVQRD--GKVVGVEADG-------DV-I  151 (428)
T ss_pred             CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEE--ECCCEEEEEEEeC--CEEEEEEcCC-------cE-E
Confidence            000  0100000  0001112367888899999998888765  8899999987654  4443333332       46 8


Q ss_pred             eeCEEEEccCCCC
Q 022090          137 SGRFLVVASGETT  149 (303)
Q Consensus       137 ~ad~vIlAtG~~~  149 (303)
                      .++.||+|+|.++
T Consensus       152 ~A~~VI~A~G~~s  164 (428)
T PRK10157        152 EAKTVILADGVNS  164 (428)
T ss_pred             ECCEEEEEeCCCH
Confidence            9999999999754

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.32  E-value=1.1e-13  Score=113.01  Aligned_cols=152  Identities=21%  Similarity=0.226  Sum_probs=85.8

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH---
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE---   85 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---   85 (303)
                      ||+|||||++|+++|..|++.+.+++++|+.+..+.....  .+.....                 ........+..   
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~--~~~~~~~-----------------~~~~~~~~~~~~~~   61 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGC--IPSPLLV-----------------EIAPHRHEFLPARL   61 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSH--HHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccc--ccccccc-----------------cccccccccccccc
Confidence            7999999999999999999999999999887642210000  0000000                 00000001110   


Q ss_pred             -HHHHHHHHcCCCceeEeCeEEEEEEEeCCC---CeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccc
Q 022090           86 -HLDHYVSHFNIGPSIRYQRSVESASYDEAT---NMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS  161 (303)
Q Consensus        86 -~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~---~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~  161 (303)
                       .+.+.+...+++.  ++++++.+++.....   ..+.+......    +..+ +.||+||+|||  +.|..|.+||.+.
T Consensus        62 ~~~~~~~~~~~v~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~----~~~~-~~~d~lviAtG--~~~~~~~i~g~~~  132 (201)
T PF07992_consen   62 FKLVDQLKNRGVEI--RLNAKVVSIDPESKRVVCPAVTIQVVETG----DGRE-IKYDYLVIATG--SRPRTPNIPGEEV  132 (201)
T ss_dssp             GHHHHHHHHHTHEE--EHHHTEEEEEESTTEEEETCEEEEEEETT----TEEE-EEEEEEEEEST--EEEEEESSTTTTT
T ss_pred             cccccccccceEEE--eeccccccccccccccccCcccceeeccC----CceE-ecCCeeeecCc--cccceeecCCCcc
Confidence             1222223445443  678899999876621   12233222211    2267 89999999999  7788888998632


Q ss_pred             cccCCCCCccEEecccCCCCCCCCCCeEEEEC
Q 022090          162 FCSSATGTGEVIHSTQYKNGKPYGGKNVLVVG  193 (303)
Q Consensus       162 ~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG  193 (303)
                      ..    ....+.++..+.. ....+++++|||
T Consensus       133 ~~----~~~~~~~~~~~~~-~~~~~~~v~VvG  159 (201)
T PF07992_consen  133 AY----FLRGVDDAQRFLE-LLESPKRVAVVG  159 (201)
T ss_dssp             EC----BTTSEEHHHHHHT-HSSTTSEEEEES
T ss_pred             cc----ccccccccccccc-cccccccccccc
Confidence            10    0122333333333 222345999999

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.32  E-value=1.4e-11  Score=109.06  Aligned_cols=135  Identities=21%  Similarity=0.205  Sum_probs=83.8

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-----------------------C---CCCceEEecC--
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-----------------------Y---SYDRLRLHLA--   59 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-----------------------~---~~~~~~~~~~--   59 (303)
                      +||+|||||++|+++|..|+++|++|+|||+.+........                       .   ..........  
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~   81 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS   81 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence            69999999999999999999999999999997643211000                       0   0000111111  


Q ss_pred             ---------cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCc
Q 022090           60 ---------KQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR  130 (303)
Q Consensus        60 ---------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~  130 (303)
                               .....+. ...+........+..+.+.|.+.+++.++..  +++++++++..+.  +..++.+.+...+  
T Consensus        82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i--~~~~~v~~~~~d~--~~~~~~~~~~~~g--  154 (356)
T PF01494_consen   82 DSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGVDI--RFGTRVVSIEQDD--DGVTVVVRDGEDG--  154 (356)
T ss_dssp             TSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEE--EESEEEEEEEEET--TEEEEEEEETCTC--
T ss_pred             Cccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhh--eeeeecccccccc--cccccccccccCC--
Confidence                     0000011 0001111223467899999999999888544  9999999998876  4455555554333  


Q ss_pred             eeEEEEeeCEEEEccCCCCC
Q 022090          131 EIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       131 ~~~~~~~ad~vIlAtG~~~~  150 (303)
                      +..+ +++|.||.|+|.+|.
T Consensus       155 ~~~~-i~adlvVgADG~~S~  173 (356)
T PF01494_consen  155 EEET-IEADLVVGADGAHSK  173 (356)
T ss_dssp             EEEE-EEESEEEE-SGTT-H
T ss_pred             ceeE-EEEeeeecccCcccc
Confidence            4457 899999999998773

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08244 hypothetical protein; Provisional

Probab=99.32  E-value=6.9e-11  Score=109.67  Aligned_cols=133  Identities=18%  Similarity=0.232  Sum_probs=84.0

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC-------------------ccCc-----CCCCceEEecCcccc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-------------------IWKK-----YSYDRLRLHLAKQFC   63 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg-------------------~w~~-----~~~~~~~~~~~~~~~   63 (303)
                      +||+||||||+|+++|..|++.|++|+|+|+.+....                   .|..     ..+............
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   82 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL   82 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence            7999999999999999999999999999999764321                   0000     001111111000000


Q ss_pred             cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEE
Q 022090           64 QLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV  143 (303)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIl  143 (303)
                      .+...+.+..+....++..+.+.+.+.++..+++.  ++++++++++.++  +..++.+.+..+    ..+ +++|+||.
T Consensus        83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~~~g----~~~-i~a~~vVg  153 (493)
T PRK08244         83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEI--FRGAEVLAVRQDG--DGVEVVVRGPDG----LRT-LTSSYVVG  153 (493)
T ss_pred             CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeE--EeCCEEEEEEEcC--CeEEEEEEeCCc----cEE-EEeCEEEE
Confidence            11111101111122467788888888888777655  9999999998765  456666654221    147 89999999


Q ss_pred             ccCCCC
Q 022090          144 ASGETT  149 (303)
Q Consensus       144 AtG~~~  149 (303)
                      |+|.+|
T Consensus       154 ADG~~S  159 (493)
T PRK08244        154 ADGAGS  159 (493)
T ss_pred             CCCCCh
Confidence            999866

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.32  E-value=5.5e-12  Score=119.69  Aligned_cols=152  Identities=20%  Similarity=0.275  Sum_probs=104.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .++|+|||+||+||+||-+|.+.|+.|+++||.+..||...+. .|.+.                       ....+.+.
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg-ipnmk-----------------------ldk~vv~r 1840 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG-IPNMK-----------------------LDKFVVQR 1840 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec-CCccc-----------------------hhHHHHHH
Confidence            4799999999999999999999999999999999999986543 22221                       11234555


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~  166 (303)
                      -.+...+.|+++  ..|+++-.          .+..+.        -. -+.|.||+|+|+ ..|+-.++||.+.     
T Consensus      1841 rv~ll~~egi~f--~tn~eigk----------~vs~d~--------l~-~~~daiv~a~gs-t~prdlpv~grd~----- 1893 (2142)
T KOG0399|consen 1841 RVDLLEQEGIRF--VTNTEIGK----------HVSLDE--------LK-KENDAIVLATGS-TTPRDLPVPGRDL----- 1893 (2142)
T ss_pred             HHHHHHhhCceE--Eeeccccc----------cccHHH--------Hh-hccCeEEEEeCC-CCCcCCCCCCccc-----
Confidence            555666667766  56655521          122221        12 356899999996 4677777888764     


Q ss_pred             CCCc-----cEEecc--------cCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCc
Q 022090          167 TGTG-----EVIHST--------QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK  211 (303)
Q Consensus       167 ~~~g-----~~~~~~--------~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~  211 (303)
                        +|     ..+|..        .-.+....++|+|+|||+|-+|-|+...-.+.|.+
T Consensus      1894 --kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~ 1949 (2142)
T KOG0399|consen 1894 --KGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCK 1949 (2142)
T ss_pred             --cccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccc
Confidence              22     112211        00112334689999999999999999988888865

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.31  E-value=3.6e-11  Score=101.17  Aligned_cols=140  Identities=20%  Similarity=0.236  Sum_probs=86.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC-CccCcCC-CCceEEecC-cccccCCCCCCCCCCC--CCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-SIWKKYS-YDRLRLHLA-KQFCQLPHLPFPSSYP--MFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g-g~w~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~   81 (303)
                      .+||+|||||++|+++|..|+++|.+|+|+||+..+| +.|.... ++.+.+..+ ..+......++...-.  ...++.
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~  100 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA  100 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence            5899999999999999999999999999999998775 4664321 222111111 0111111112111111  123567


Q ss_pred             HHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCC-CeEEEEEeecC---CC-CceeEEEEeeCEEEEccCCCC
Q 022090           82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT-NMWNVKASNLL---SP-GREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        82 ~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~-~~~~v~~~~~~---~~-~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      ++...+...+.+.+++.  ++++.|+++..+++. ...-|.+....   .+ ..+... +.++.||.|||+.+
T Consensus       101 el~~~L~~~a~e~GV~I--~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~-i~Ak~VVdATG~~a  170 (254)
T TIGR00292       101 EFISTLASKALQAGAKI--FNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLT-QRSRVVVDATGHDA  170 (254)
T ss_pred             HHHHHHHHHHHHcCCEE--ECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEE-EEcCEEEEeecCCc
Confidence            88888888888888665  889999999876532 12223332110   00 001257 89999999999643

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.31  E-value=1e-10  Score=109.53  Aligned_cols=137  Identities=19%  Similarity=0.273  Sum_probs=87.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc------------------------CCCCceEEecCc-
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK------------------------YSYDRLRLHLAK-   60 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~------------------------~~~~~~~~~~~~-   60 (303)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.+......+.                        ............ 
T Consensus         9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g   88 (538)
T PRK06183          9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKG   88 (538)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCC
Confidence            4689999999999999999999999999999998754321110                        001112221111 


Q ss_pred             -ccccCCC-CCCCCCCC--CCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090           61 -QFCQLPH-LPFPSSYP--MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (303)
Q Consensus        61 -~~~~~~~-~~~~~~~~--~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (303)
                       ....+.. ...+..++  ...++..+.+.|.+.+.++ +++  ++++++|++++.++  +.+++++.+.++   +..+ 
T Consensus        89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~--v~~g~~v~~i~~~~--~~v~v~~~~~~G---~~~~-  160 (538)
T PRK06183         89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVR--VRFGHEVTALTQDD--DGVTVTLTDADG---QRET-  160 (538)
T ss_pred             CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcE--EEcCCEEEEEEEcC--CeEEEEEEcCCC---CEEE-
Confidence             1111110 00001111  2235667888888877665 544  49999999998876  557777764211   2357 


Q ss_pred             EeeCEEEEccCCCCC
Q 022090          136 YSGRFLVVASGETTN  150 (303)
Q Consensus       136 ~~ad~vIlAtG~~~~  150 (303)
                      +++|+||.|+|.+|.
T Consensus       161 i~ad~vVgADG~~S~  175 (538)
T PRK06183        161 VRARYVVGCDGANSF  175 (538)
T ss_pred             EEEEEEEecCCCchh
Confidence            899999999998774

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.30  E-value=6e-11  Score=106.93  Aligned_cols=137  Identities=15%  Similarity=0.218  Sum_probs=86.9

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC----C--------------------ccCc------CC
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----S--------------------IWKK------YS   50 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g----g--------------------~w~~------~~   50 (303)
                      |+. ...+||+|||||++|+++|..|+++|++|+|+|+.+...    +                    .|..      ..
T Consensus         1 ~~~-~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~   79 (392)
T PRK08773          1 MSR-RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQP   79 (392)
T ss_pred             CCC-CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCc
Confidence            533 456899999999999999999999999999999976321    1                    0100      00


Q ss_pred             CCceEEecCc--ccccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCC
Q 022090           51 YDRLRLHLAK--QFCQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS  127 (303)
Q Consensus        51 ~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~  127 (303)
                      +..+.+....  ....+..... +.......++..+.+.+.+.+++.+++.  +++++|+++..++  +.++|++.++  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i--~~~~~v~~i~~~~--~~v~v~~~~g--  153 (392)
T PRK08773         80 YRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQL--HCPARVVALEQDA--DRVRLRLDDG--  153 (392)
T ss_pred             ccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEE--EcCCeEEEEEecC--CeEEEEECCC--
Confidence            1111111100  0001110000 0001112456788888888888777655  8899999998765  5677777653  


Q ss_pred             CCceeEEEEeeCEEEEccCCCCC
Q 022090          128 PGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       128 ~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                           .+ +.+|.||.|+|.++.
T Consensus       154 -----~~-~~a~~vV~AdG~~S~  170 (392)
T PRK08773        154 -----RR-LEAALAIAADGAAST  170 (392)
T ss_pred             -----CE-EEeCEEEEecCCCch
Confidence                 46 899999999997663

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.30  E-value=1.2e-11  Score=111.87  Aligned_cols=179  Identities=22%  Similarity=0.256  Sum_probs=110.0

Q ss_pred             EEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCC-CCCHHHHHHH
Q 022090           10 VIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQFIEH   86 (303)
Q Consensus        10 vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~   86 (303)
                      ++|||+|++|+++|..|.+.  +.+++++.+.....       |...              +.+..... ......+...
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~-------~~~~--------------~~~~~~~~~~~~~~~~~~~   59 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYS-------YYRC--------------PLSLYVGGGIASLEDLRYP   59 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCC-------CCCC--------------ccchHHhcccCCHHHhccc
Confidence            58999999999999998886  45888887766432       1000              00000000 0011111111


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~  166 (303)
                      .. +....++..  +.+++|++++...    ..|.+.++        + +.+|++++|||  +.|..++  +.  +    
T Consensus        60 ~~-~~~~~~i~~--~~~~~v~~id~~~----~~v~~~~g--------~-~~yd~LvlatG--a~~~~~~--~~--~----  113 (415)
T COG0446          60 PR-FNRATGIDV--RTGTEVTSIDPEN----KVVLLDDG--------E-IEYDYLVLATG--ARPRPPP--IS--D----  113 (415)
T ss_pred             ch-hHHhhCCEE--eeCCEEEEecCCC----CEEEECCC--------c-ccccEEEEcCC--CcccCCC--cc--c----
Confidence            11 113445544  8889999998765    45666653        4 78999999999  6666554  11  1    


Q ss_pred             CCCccEEecccCCCCC-----CCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhh-HHHHHHHHhhC
Q 022090          167 TGTGEVIHSTQYKNGK-----PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM-VYLGVVLFKYV  238 (303)
Q Consensus       167 ~~~g~~~~~~~~~~~~-----~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~-~~~~~~~~~~l  238 (303)
                        ..............     ....++++|||+|..|+|+|..+.++|.+|++++..+ ++++... ..++..+.+.+
T Consensus       114 --~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~-~~~~~~~~~~~~~~~~~~l  188 (415)
T COG0446         114 --WEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD-RLGGQLLDPEVAEELAELL  188 (415)
T ss_pred             --cCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc-ccchhhhhHHHHHHHHHHH
Confidence              11112222111111     1114899999999999999999999999999999999 7777765 44444444433

>PRK08013 oxidoreductase; Provisional

Probab=99.30  E-value=5e-11  Score=107.69  Aligned_cols=132  Identities=17%  Similarity=0.252  Sum_probs=84.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC---C----------------------ccCc------CCCCceE
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---S----------------------IWKK------YSYDRLR   55 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g---g----------------------~w~~------~~~~~~~   55 (303)
                      .+||+||||||+|+++|..|++.|++|+|+|+.+...   |                      .|..      ..+..+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~   82 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME   82 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence            3799999999999999999999999999999976421   1                      1111      0111111


Q ss_pred             EecCcccccCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCce
Q 022090           56 LHLAKQFCQLPHLPFPSSYP---MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE  131 (303)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~  131 (303)
                      ...................+   ...++..+.+.|.+.+... +++.  +++++|++++.++  +.+.|++.++      
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i--~~~~~v~~i~~~~--~~v~v~~~~g------  152 (400)
T PRK08013         83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITL--LAPAELQQVAWGE--NEAFLTLKDG------  152 (400)
T ss_pred             EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEE--EcCCeeEEEEecC--CeEEEEEcCC------
Confidence            11111000000000000111   1245778888888877765 4444  8999999997765  4567777654      


Q ss_pred             eEEEEeeCEEEEccCCCCC
Q 022090          132 IEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       132 ~~~~~~ad~vIlAtG~~~~  150 (303)
                       .+ +++|.||.|+|.+|.
T Consensus       153 -~~-i~a~lvVgADG~~S~  169 (400)
T PRK08013        153 -SM-LTARLVVGADGANSW  169 (400)
T ss_pred             -CE-EEeeEEEEeCCCCcH
Confidence             57 899999999998774

>PRK06184 hypothetical protein; Provisional

Probab=99.28  E-value=1.8e-10  Score=107.12  Aligned_cols=135  Identities=19%  Similarity=0.273  Sum_probs=84.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC------ccCc------------------CCCCceEEecC-cc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWKK------------------YSYDRLRLHLA-KQ   61 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg------~w~~------------------~~~~~~~~~~~-~~   61 (303)
                      .+||+||||||+|+++|..|+++|++|+|+|+.+....      .+..                  ..++....... ..
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~   82 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS   82 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence            47999999999999999999999999999999764421      1100                  01111111111 00


Q ss_pred             cccCCCC----CC---CCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEE
Q 022090           62 FCQLPHL----PF---PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE  134 (303)
Q Consensus        62 ~~~~~~~----~~---~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~  134 (303)
                      .......    +.   +.......++..+.+.|.+.+...+++.  ++++++++++.++  +.+++.+.+..++    .+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i--~~~~~v~~i~~~~--~~v~v~~~~~~~~----~~  154 (502)
T PRK06184         83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRV--EFGCELVGFEQDA--DGVTARVAGPAGE----ET  154 (502)
T ss_pred             EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEE--EeCcEEEEEEEcC--CcEEEEEEeCCCe----EE
Confidence            0000000    00   0001122456677778888887777554  9999999998765  4466666432221    57


Q ss_pred             EEeeCEEEEccCCCCC
Q 022090          135 YYSGRFLVVASGETTN  150 (303)
Q Consensus       135 ~~~ad~vIlAtG~~~~  150 (303)
                       +++|+||.|+|.+|.
T Consensus       155 -i~a~~vVgADG~~S~  169 (502)
T PRK06184        155 -VRARYLVGADGGRSF  169 (502)
T ss_pred             -EEeCEEEECCCCchH
Confidence             899999999998763

>PLN02463 lycopene beta cyclase

Probab=99.28  E-value=6.7e-11  Score=107.45  Aligned_cols=127  Identities=15%  Similarity=0.151  Sum_probs=83.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC-----CccCc------------CCCCceEEecCcccccCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-----SIWKK------------YSYDRLRLHLAKQFCQLPHL   68 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g-----g~w~~------------~~~~~~~~~~~~~~~~~~~~   68 (303)
                      ..+||+|||||++|+++|..|++.|++|+++|+.+...     +.|..            ..++...+.......  ...
T Consensus        27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~--~~~  104 (447)
T PLN02463         27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKK--KDL  104 (447)
T ss_pred             cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCC--ccc
Confidence            35799999999999999999999999999999975321     22221            011111111000000  000


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090           69 PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (303)
Q Consensus        69 ~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~  148 (303)
                        ... -...++..+.+++.+.+...++..   .+.+|++++..+  +.+.|++.++       .+ ++++.||.|+|..
T Consensus       105 --~~~-y~~V~R~~L~~~Ll~~~~~~GV~~---~~~~V~~I~~~~--~~~~V~~~dG-------~~-i~A~lVI~AdG~~  168 (447)
T PLN02463        105 --DRP-YGRVNRKKLKSKMLERCIANGVQF---HQAKVKKVVHEE--SKSLVVCDDG-------VK-IQASLVLDATGFS  168 (447)
T ss_pred             --cCc-ceeEEHHHHHHHHHHHHhhcCCEE---EeeEEEEEEEcC--CeEEEEECCC-------CE-EEcCEEEECcCCC
Confidence              000 122468889999988887777653   357888888765  5677887764       47 8999999999975


Q ss_pred             CC
Q 022090          149 TN  150 (303)
Q Consensus       149 ~~  150 (303)
                      +.
T Consensus       169 s~  170 (447)
T PLN02463        169 RC  170 (447)
T ss_pred             cC
Confidence            53

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.28  E-value=1.2e-10  Score=105.78  Aligned_cols=136  Identities=20%  Similarity=0.299  Sum_probs=82.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC----C-----------------ccCc-----CCCCceEEecC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----S-----------------IWKK-----YSYDRLRLHLA   59 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g----g-----------------~w~~-----~~~~~~~~~~~   59 (303)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.+...    |                 .|..     .....+.....
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   96 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA   96 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence            35899999999999999999999999999999987532    1                 1110     00111111111


Q ss_pred             c--ccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090           60 K--QFCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (303)
Q Consensus        60 ~--~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (303)
                      .  ....+.......... ....+..+.+.|.+.+... ++.  +++++++++++.++  +.+.|.+.+++    +..+ 
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~v~~~~--~~~~v~~~~~~----~~~~-  167 (415)
T PRK07364         97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNIT--WLCPAEVVSVEYQQ--DAATVTLEIEG----KQQT-  167 (415)
T ss_pred             CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecC--CeeEEEEccCC----cceE-
Confidence            0  001111100000001 1123346777777766655 444  48899999997765  55777776432    1247 


Q ss_pred             EeeCEEEEccCCCCC
Q 022090          136 YSGRFLVVASGETTN  150 (303)
Q Consensus       136 ~~ad~vIlAtG~~~~  150 (303)
                      +++|.||.|+|.+|.
T Consensus       168 i~adlvIgADG~~S~  182 (415)
T PRK07364        168 LQSKLVVAADGARSP  182 (415)
T ss_pred             EeeeEEEEeCCCCch
Confidence            899999999998774

>PRK06834 hypothetical protein; Provisional

Probab=99.26  E-value=1.6e-10  Score=106.67  Aligned_cols=132  Identities=20%  Similarity=0.274  Sum_probs=84.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC-------CccCc--------CCCCceE-----E---ecCcccc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-------SIWKK--------YSYDRLR-----L---HLAKQFC   63 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g-------g~w~~--------~~~~~~~-----~---~~~~~~~   63 (303)
                      .+||+||||||+|+++|..|++.|++|+|+|+.+...       +.+..        ..++.+.     .   .......
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   82 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL   82 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence            3799999999999999999999999999999976421       11110        0011000     0   0000000


Q ss_pred             cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEE
Q 022090           64 QLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV  143 (303)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIl  143 (303)
                      .+...+....+.....+..+.+.|.+.+++.++.+  +++++|++++.++  +.+.+++.++       .+ +++|+||.
T Consensus        83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i--~~~~~v~~v~~~~--~~v~v~~~~g-------~~-i~a~~vVg  150 (488)
T PRK06834         83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPI--YRGREVTGFAQDD--TGVDVELSDG-------RT-LRAQYLVG  150 (488)
T ss_pred             ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEcC--CeEEEEECCC-------CE-EEeCEEEE
Confidence            11111100011222456778888888888777555  9999999998865  4577766543       46 89999999


Q ss_pred             ccCCCCC
Q 022090          144 ASGETTN  150 (303)
Q Consensus       144 AtG~~~~  150 (303)
                      |+|.+|.
T Consensus       151 ADG~~S~  157 (488)
T PRK06834        151 CDGGRSL  157 (488)
T ss_pred             ecCCCCC
Confidence            9998663

>PRK10015 oxidoreductase; Provisional

Probab=99.26  E-value=1.8e-10  Score=104.78  Aligned_cols=132  Identities=13%  Similarity=0.126  Sum_probs=82.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc------cCcCC----CCceE---------------EecCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI------WKKYS----YDRLR---------------LHLAK   60 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~------w~~~~----~~~~~---------------~~~~~   60 (303)
                      ..+||+|||||++|+++|..|++.|++|+++|+.+..|..      .....    .+.+.               .....
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~   83 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE   83 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence            4589999999999999999999999999999998765421      00000    11100               00000


Q ss_pred             c--cccCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEE
Q 022090           61 Q--FCQLPHLP--FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY  136 (303)
Q Consensus        61 ~--~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~  136 (303)
                      .  ...+....  .+........+..+..+|.+.++..+.+.  +.+++|+.+..++  +.+.....++       .+ +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--~~v~~v~~~~-------~~-i  151 (429)
T PRK10015         84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQF--IPGVRVDALVREG--NKVTGVQAGD-------DI-L  151 (429)
T ss_pred             CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEE--ECCcEEEEEEEeC--CEEEEEEeCC-------eE-E
Confidence            0  00000000  00000112357888888988888888665  8889999987654  3444332221       57 8


Q ss_pred             eeCEEEEccCCCC
Q 022090          137 SGRFLVVASGETT  149 (303)
Q Consensus       137 ~ad~vIlAtG~~~  149 (303)
                      .++.||+|+|.++
T Consensus       152 ~A~~VI~AdG~~s  164 (429)
T PRK10015        152 EANVVILADGVNS  164 (429)
T ss_pred             ECCEEEEccCcch
Confidence            9999999999755

>PRK07190 hypothetical protein; Provisional

Probab=99.26  E-value=1.8e-10  Score=106.20  Aligned_cols=135  Identities=16%  Similarity=0.203  Sum_probs=84.9

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc--------------C----------CCCceEE
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--------------Y----------SYDRLRL   56 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~--------------~----------~~~~~~~   56 (303)
                      |++  ..+||+||||||+|+++|..|+++|++|+|+|+.+.....-+.              .          .+.....
T Consensus         1 m~~--~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~   78 (487)
T PRK07190          1 MST--QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSV   78 (487)
T ss_pred             CCC--ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEE
Confidence            653  3579999999999999999999999999999998754211000              0          0000000


Q ss_pred             ecCcccccCCC--C-CCCCC-C--CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCc
Q 022090           57 HLAKQFCQLPH--L-PFPSS-Y--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR  130 (303)
Q Consensus        57 ~~~~~~~~~~~--~-~~~~~-~--~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~  130 (303)
                      ...........  + ..+.. .  ....++..+.+.|.+.++..++++  +++++|++++.++  +.+.+.+.++     
T Consensus        79 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v--~~~~~v~~l~~~~--~~v~v~~~~g-----  149 (487)
T PRK07190         79 WANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAV--KRNTSVVNIELNQ--AGCLTTLSNG-----  149 (487)
T ss_pred             ecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEE--EeCCEEEEEEEcC--CeeEEEECCC-----
Confidence            00011100000  0 00000 0  112356677778888888777665  9999999998876  4466665443     


Q ss_pred             eeEEEEeeCEEEEccCCCC
Q 022090          131 EIEEYYSGRFLVVASGETT  149 (303)
Q Consensus       131 ~~~~~~~ad~vIlAtG~~~  149 (303)
                        .+ +.+++||.|+|.+|
T Consensus       150 --~~-v~a~~vVgADG~~S  165 (487)
T PRK07190        150 --ER-IQSRYVIGADGSRS  165 (487)
T ss_pred             --cE-EEeCEEEECCCCCH
Confidence              47 89999999999766

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.26  E-value=8.9e-11  Score=105.83  Aligned_cols=132  Identities=17%  Similarity=0.135  Sum_probs=86.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc--CCC--------CceE----EecCcccccCCCCC---
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--YSY--------DRLR----LHLAKQFCQLPHLP---   69 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~--~~~--------~~~~----~~~~~~~~~~~~~~---   69 (303)
                      .+||+||||||||++||+.|++.|++|+++|+.+.+|.--..  ..+        +...    .........++...   
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~   82 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAI   82 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEE
Confidence            589999999999999999999999999999998877641110  000        0000    00000000001000   


Q ss_pred             -CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090           70 -FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (303)
Q Consensus        70 -~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~  148 (303)
                       .+.......++..+.++|...+++.|.+.  +.++.+..+..++  +...+....+.      .+ +++++||.|+|.+
T Consensus        83 ~~~~~~~y~v~R~~fd~~La~~A~~aGae~--~~~~~~~~~~~~~--~~~~~~~~~~~------~e-~~a~~vI~AdG~~  151 (396)
T COG0644          83 EVPVGEGYIVDRAKFDKWLAERAEEAGAEL--YPGTRVTGVIRED--DGVVVGVRAGD------DE-VRAKVVIDADGVN  151 (396)
T ss_pred             ecCCCceEEEEhHHhhHHHHHHHHHcCCEE--EeceEEEEEEEeC--CcEEEEEEcCC------EE-EEcCEEEECCCcc
Confidence             00000112358899999999999999877  8999999998876  33444443321      47 8999999999964


Q ss_pred             C
Q 022090          149 T  149 (303)
Q Consensus       149 ~  149 (303)
                      +
T Consensus       152 s  152 (396)
T COG0644         152 S  152 (396)
T ss_pred             h
Confidence            4

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.25  E-value=3.1e-10  Score=106.60  Aligned_cols=139  Identities=17%  Similarity=0.236  Sum_probs=86.0

Q ss_pred             CCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc--------------CCCC----------ceE-Eec
Q 022090            4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--------------YSYD----------RLR-LHL   58 (303)
Q Consensus         4 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~--------------~~~~----------~~~-~~~   58 (303)
                      .+..+||+|||||++|+++|..|++.|++|+|+|+.+......+.              ...+          ... ...
T Consensus        20 ~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~   99 (547)
T PRK08132         20 DPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLR   99 (547)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeC
Confidence            345689999999999999999999999999999998754321100              0000          000 000


Q ss_pred             CcccccCCCCCCC-CCCCCC--CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090           59 AKQFCQLPHLPFP-SSYPMF--VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (303)
Q Consensus        59 ~~~~~~~~~~~~~-~~~~~~--~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (303)
                      ......+...+.. ..++.+  .++..+..+|.+.+.+.+. ..++++++|++++.++  +.+++.+.+.++    ..+ 
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~-v~v~~~~~v~~i~~~~--~~v~v~~~~~~g----~~~-  171 (547)
T PRK08132        100 DEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPN-IDLRWKNKVTGLEQHD--DGVTLTVETPDG----PYT-  171 (547)
T ss_pred             CCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCC-cEEEeCCEEEEEEEcC--CEEEEEEECCCC----cEE-
Confidence            1111111111100 111111  3566788888888776531 3458999999998765  456666554221    147 


Q ss_pred             EeeCEEEEccCCCCC
Q 022090          136 YSGRFLVVASGETTN  150 (303)
Q Consensus       136 ~~ad~vIlAtG~~~~  150 (303)
                      +++|+||.|+|.+|.
T Consensus       172 i~ad~vVgADG~~S~  186 (547)
T PRK08132        172 LEADWVIACDGARSP  186 (547)
T ss_pred             EEeCEEEECCCCCcH
Confidence            899999999997664

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.25  E-value=1.1e-10  Score=105.14  Aligned_cols=133  Identities=19%  Similarity=0.293  Sum_probs=84.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC------------------ccCc-----CCCCceEEecCcc-
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------------------IWKK-----YSYDRLRLHLAKQ-   61 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg------------------~w~~-----~~~~~~~~~~~~~-   61 (303)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.+..+.                  .|..     ..+..+.+..... 
T Consensus         6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~   85 (388)
T PRK07494          6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGR   85 (388)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCC
Confidence            457999999999999999999999999999999864321                  1211     0111222211110 


Q ss_pred             ccc-----CCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090           62 FCQ-----LPHLPFPSS-YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (303)
Q Consensus        62 ~~~-----~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (303)
                      ...     +........ +....++..+.+.+.+.+..++...  +++++|++++.++  +.|.|++.++       .+ 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-  153 (388)
T PRK07494         86 LIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT--RFGDEAESVRPRE--DEVTVTLADG-------TT-  153 (388)
T ss_pred             CCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE--EECCeeEEEEEcC--CeEEEEECCC-------CE-
Confidence            000     000000000 1112456788888888777665333  7899999998765  5688877653       56 


Q ss_pred             EeeCEEEEccCCCCC
Q 022090          136 YSGRFLVVASGETTN  150 (303)
Q Consensus       136 ~~ad~vIlAtG~~~~  150 (303)
                      +++|.||.|+|.+|.
T Consensus       154 ~~a~~vI~AdG~~S~  168 (388)
T PRK07494        154 LSARLVVGADGRNSP  168 (388)
T ss_pred             EEEeEEEEecCCCch
Confidence            899999999997663

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.25  E-value=1.8e-10  Score=103.66  Aligned_cols=129  Identities=18%  Similarity=0.193  Sum_probs=82.9

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCC----ceEEec--Cccc-----ccCCCCCCCCCCCC-
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYD----RLRLHL--AKQF-----CQLPHLPFPSSYPM-   76 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~----~~~~~~--~~~~-----~~~~~~~~~~~~~~-   76 (303)
                      ||+|||||++|+++|..|++.|++|+|+|+++..++.+....+.    .+.+..  ....     ..++........+. 
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            79999999999999999999999999999988776532211111    010000  0000     00010000001111 


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        77 ~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      ..++..+.+++.+.+...++.   .+..+|..+.... .+.|.|++.++       .+ ++++.||.|+|..+
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~---~~~~~v~~i~~~~-~~~~~v~~~~g-------~~-~~a~~VI~A~G~~s  141 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVL---WLERKAIHAEADG-VALSTVYCAGG-------QR-IQARLVIDARGFGP  141 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcE---EEccEEEEEEecC-CceeEEEeCCC-------CE-EEeCEEEECCCCch
Confidence            256788999998888877754   3466788887652 35677877653       46 89999999999765

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.24  E-value=1.5e-10  Score=104.63  Aligned_cols=132  Identities=20%  Similarity=0.292  Sum_probs=84.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCCC---------------------ccCc-----CCCCceEEec
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYAS---------------------IWKK-----YSYDRLRLHL   58 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~gg---------------------~w~~-----~~~~~~~~~~   58 (303)
                      ++||+|||||++|+++|..|++.|  ++|+|+|+.+....                     .|..     .....+....
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~   80 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD   80 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence            379999999999999999999995  99999999764210                     1100     0011111111


Q ss_pred             Ccc-------cccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCc
Q 022090           59 AKQ-------FCQLPHLP-FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR  130 (303)
Q Consensus        59 ~~~-------~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~  130 (303)
                      ...       ...+.... ....+....++..+.+.|.+.+...++..  +++++|++++.++  +.+.|.+.++     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~g-----  151 (403)
T PRK07333         81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDL--REATSVTDFETRD--EGVTVTLSDG-----  151 (403)
T ss_pred             CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEcC--CEEEEEECCC-----
Confidence            000       00000000 00011123567889999998888777655  8999999998765  5677777653     


Q ss_pred             eeEEEEeeCEEEEccCCCCC
Q 022090          131 EIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       131 ~~~~~~~ad~vIlAtG~~~~  150 (303)
                        .+ +.+|.||.|+|.+|.
T Consensus       152 --~~-~~ad~vI~AdG~~S~  168 (403)
T PRK07333        152 --SV-LEARLLVAADGARSK  168 (403)
T ss_pred             --CE-EEeCEEEEcCCCChH
Confidence              46 899999999997653

>PRK07045 putative monooxygenase; Reviewed

Probab=99.24  E-value=1.8e-10  Score=103.64  Aligned_cols=135  Identities=22%  Similarity=0.279  Sum_probs=84.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC----CC--ccCcC-------------------CCCceEEecCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----AS--IWKKY-------------------SYDRLRLHLAK   60 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~----gg--~w~~~-------------------~~~~~~~~~~~   60 (303)
                      ..+||+||||||+|+++|..|++.|++|+|+|+.+..    ++  .+...                   ....+......
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g   83 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK   83 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence            4579999999999999999999999999999988754    21  11110                   00111111111


Q ss_pred             c-cccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEe
Q 022090           61 Q-FCQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS  137 (303)
Q Consensus        61 ~-~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~  137 (303)
                      . ...+..... +..+....++..+.+.+.+.+... ++  .++++++|++++.++++..+.|++.++       .+ +.
T Consensus        84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~~~~~~~v~~~~g-------~~-~~  153 (388)
T PRK07045         84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNV--RLRFETSIERIERDADGTVTSVTLSDG-------ER-VA  153 (388)
T ss_pred             cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCe--eEEeCCEEEEEEECCCCcEEEEEeCCC-------CE-EE
Confidence            0 110110000 011111245677888777766543 44  459999999998876333456776553       46 89


Q ss_pred             eCEEEEccCCCCC
Q 022090          138 GRFLVVASGETTN  150 (303)
Q Consensus       138 ad~vIlAtG~~~~  150 (303)
                      +|.||.|+|.+|.
T Consensus       154 ~~~vIgADG~~S~  166 (388)
T PRK07045        154 PTVLVGADGARSM  166 (388)
T ss_pred             CCEEEECCCCChH
Confidence            9999999998773

>PRK06185 hypothetical protein; Provisional

Probab=99.23  E-value=2.3e-10  Score=103.60  Aligned_cols=137  Identities=18%  Similarity=0.351  Sum_probs=83.3

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC-----CC--------------ccCcC------CCCceEEecC
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-----AS--------------IWKKY------SYDRLRLHLA   59 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~-----gg--------------~w~~~------~~~~~~~~~~   59 (303)
                      ...+||+|||||++|+++|..|++.|++|+|+|+.+..     +.              .|..-      .+..+.....
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~   83 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIG   83 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence            35689999999999999999999999999999997532     11              11110      0111111111


Q ss_pred             cc-c--ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090           60 KQ-F--CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (303)
Q Consensus        60 ~~-~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (303)
                      .. .  ..+...+.+..+..+.++..+.+.+.+.+... ++.  ++++++|+++..++ +....|.+...++    ..+ 
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~~~~~~-~~v~~v~~~~~~g----~~~-  155 (407)
T PRK06185         84 GRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFT--LRMGAEVTGLIEEG-GRVTGVRARTPDG----PGE-  155 (407)
T ss_pred             CeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcE--EEeCCEEEEEEEeC-CEEEEEEEEcCCC----cEE-
Confidence            11 0  11111111111222356778888888877664 544  48899999998765 2222244432211    146 


Q ss_pred             EeeCEEEEccCCCC
Q 022090          136 YSGRFLVVASGETT  149 (303)
Q Consensus       136 ~~ad~vIlAtG~~~  149 (303)
                      +.++.||.|+|.+|
T Consensus       156 i~a~~vI~AdG~~S  169 (407)
T PRK06185        156 IRADLVVGADGRHS  169 (407)
T ss_pred             EEeCEEEECCCCch
Confidence            89999999999876

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.23  E-value=9.1e-11  Score=106.21  Aligned_cols=131  Identities=16%  Similarity=0.264  Sum_probs=81.8

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC-------------CC--------------ccCc----C--CCCce
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-------------AS--------------IWKK----Y--SYDRL   54 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~-------------gg--------------~w~~----~--~~~~~   54 (303)
                      +||+|||||++|+++|..|++.|++|+|+|+.+..             +.              .|..    .  .+..+
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~   82 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM   82 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence            69999999999999999999999999999997621             00              1100    0  01111


Q ss_pred             EEecCccc--ccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCce
Q 022090           55 RLHLAKQF--CQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE  131 (303)
Q Consensus        55 ~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~  131 (303)
                      ........  ..+...... .......++..+.+.+.+.++..+++  +++++++++++.++  +.+.|.+.++      
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~--~~v~v~~~~g------  152 (405)
T PRK05714         83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIG--LLANARLEQMRRSG--DDWLLTLADG------  152 (405)
T ss_pred             EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCE--EEcCCEEEEEEEcC--CeEEEEECCC------
Confidence            11111100  001000000 00011234567777777777666654  48899999998765  5588877654      


Q ss_pred             eEEEEeeCEEEEccCCCCC
Q 022090          132 IEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       132 ~~~~~~ad~vIlAtG~~~~  150 (303)
                       .+ +.+|.||.|+|.+|.
T Consensus       153 -~~-~~a~~vVgAdG~~S~  169 (405)
T PRK05714        153 -RQ-LRAPLVVAADGANSA  169 (405)
T ss_pred             -CE-EEeCEEEEecCCCch
Confidence             46 899999999998764

>PRK06126 hypothetical protein; Provisional

Probab=99.23  E-value=4.5e-10  Score=105.54  Aligned_cols=140  Identities=17%  Similarity=0.191  Sum_probs=85.1

Q ss_pred             CCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc-------------------cCc---CCCC------ceE
Q 022090            4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-------------------WKK---YSYD------RLR   55 (303)
Q Consensus         4 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~-------------------w~~---~~~~------~~~   55 (303)
                      .+..++|+|||||++|+++|..|+++|++|+|+|+.+.....                   |..   ..++      ...
T Consensus         4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~   83 (545)
T PRK06126          4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAY   83 (545)
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceE
Confidence            345689999999999999999999999999999997642210                   000   0000      000


Q ss_pred             Ee--cCcccccCCC--C----CC--------CC-CCCCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCe
Q 022090           56 LH--LAKQFCQLPH--L----PF--------PS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNM  117 (303)
Q Consensus        56 ~~--~~~~~~~~~~--~----~~--------~~-~~~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~  117 (303)
                      ..  ....+..+..  .    ..        .. ......++..+...|.+.+++. +++.  +++++|++++.++  +.
T Consensus        84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i--~~~~~v~~i~~~~--~~  159 (545)
T PRK06126         84 FTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTL--RYGHRLTDFEQDA--DG  159 (545)
T ss_pred             EecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceE--EeccEEEEEEECC--Ce
Confidence            00  0000000000  0    00        00 0012245677888888877764 5444  9999999998765  44


Q ss_pred             EEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090          118 WNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       118 ~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      +++.+.+..++  +..+ +.+|+||.|+|.+|.
T Consensus       160 v~v~~~~~~~g--~~~~-i~ad~vVgADG~~S~  189 (545)
T PRK06126        160 VTATVEDLDGG--ESLT-IRADYLVGCDGARSA  189 (545)
T ss_pred             EEEEEEECCCC--cEEE-EEEEEEEecCCcchH
Confidence            66666542222  3357 899999999998763

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.22  E-value=2e-10  Score=103.25  Aligned_cols=133  Identities=21%  Similarity=0.311  Sum_probs=86.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC-CCC---C----------------CccCc------CCCCceEEecCc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NCY---A----------------SIWKK------YSYDRLRLHLAK   60 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~-~~~---g----------------g~w~~------~~~~~~~~~~~~   60 (303)
                      .+||+|||||++|+++|..|++.|++|+|+|+. ...   |                |.+..      ..+.........
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~   81 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG   81 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence            479999999999999999999999999999998 211   1                01000      011111111111


Q ss_pred             c-cccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEe-ecCCCCceeEEEEe
Q 022090           61 Q-FCQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEYYS  137 (303)
Q Consensus        61 ~-~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~~~  137 (303)
                      . ...+...... .......++.++.+.|.+.+...+. +.++++++|+.++.++  +..++++. ++       ++ ++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-v~~~~~~~v~~~~~~~--~~v~v~l~~dG-------~~-~~  150 (387)
T COG0654          82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPN-VTLRFGAEVEAVEQDG--DGVTVTLSFDG-------ET-LD  150 (387)
T ss_pred             ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCC-cEEEcCceEEEEEEcC--CceEEEEcCCC-------cE-Ee
Confidence            1 1111111111 1112235688999999998887652 3348999999999887  45667776 43       47 89


Q ss_pred             eCEEEEccCCCCC
Q 022090          138 GRFLVVASGETTN  150 (303)
Q Consensus       138 ad~vIlAtG~~~~  150 (303)
                      ||.||.|+|.+|.
T Consensus       151 a~llVgADG~~S~  163 (387)
T COG0654         151 ADLLVGADGANSA  163 (387)
T ss_pred             cCEEEECCCCchH
Confidence            9999999998773

>PRK06753 hypothetical protein; Provisional

Probab=99.22  E-value=2.6e-10  Score=102.07  Aligned_cols=127  Identities=19%  Similarity=0.247  Sum_probs=81.1

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc-------------------cCc-----CCCCceEEecCccccc
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-------------------WKK-----YSYDRLRLHLAKQFCQ   64 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~-------------------w~~-----~~~~~~~~~~~~~~~~   64 (303)
                      +|+|||||++|+++|..|++.|++|+|+|+++.....                   |..     .....+....+... .
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~-~   80 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT-L   80 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-E
Confidence            7999999999999999999999999999998754311                   000     00111111111100 0


Q ss_pred             CCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEE
Q 022090           65 LPHLPFPSS-YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV  143 (303)
Q Consensus        65 ~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIl  143 (303)
                      +...++... .....++..+.+.|.+.+..    ..++++++|++++.++  +.+.|++.++       .+ +.+|.||.
T Consensus        81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~~~~vig  146 (373)
T PRK06753         81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVKE----DAIFTGKEVTKIENET--DKVTIHFADG-------ES-EAFDLCIG  146 (373)
T ss_pred             EeecccccCCccccccHHHHHHHHHHhCCC----ceEEECCEEEEEEecC--CcEEEEECCC-------CE-EecCEEEE
Confidence            001111111 11234677887777766542    2458999999998654  5678877664       56 89999999


Q ss_pred             ccCCCCC
Q 022090          144 ASGETTN  150 (303)
Q Consensus       144 AtG~~~~  150 (303)
                      |+|.+|.
T Consensus       147 adG~~S~  153 (373)
T PRK06753        147 ADGIHSK  153 (373)
T ss_pred             CCCcchH
Confidence            9997664

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.20  E-value=1.5e-10  Score=92.00  Aligned_cols=135  Identities=20%  Similarity=0.264  Sum_probs=84.7

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC-CccCcC-CCCceEEecCcccc-cCCCCCCCCCCCCC--CCHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-SIWKKY-SYDRLRLHLAKQFC-QLPHLPFPSSYPMF--VSRAQ   82 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g-g~w~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~   82 (303)
                      .||+|+||||+||+||+.|++.|.+|+|||++..+| |.|.-. .++.+.+..+.... .--..++.+.-..+  .+..+
T Consensus        31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e  110 (262)
T COG1635          31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAE  110 (262)
T ss_pred             ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHH
Confidence            599999999999999999999999999999986655 588754 34555554443211 00111111111112  24566


Q ss_pred             HHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCe------EEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM------WNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        83 l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~------~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      +...+...+-+.+...  +..+.|+++-..++...      |+.....+-.  +.... +++++||-|||+
T Consensus       111 ~~skl~~~a~~aGaki--~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lh--vDPl~-i~a~~VvDaTGH  176 (262)
T COG1635         111 FASKLAARALDAGAKI--FNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLH--VDPLT-IRAKAVVDATGH  176 (262)
T ss_pred             HHHHHHHHHHhcCcee--eecceEEEEEEecCCceEEEEEecchhhhcccc--cCcce-eeEEEEEeCCCC
Confidence            6777776666677554  77788888876653221      3222211111  12256 899999999996

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.20  E-value=1.7e-10  Score=104.19  Aligned_cols=134  Identities=22%  Similarity=0.236  Sum_probs=83.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC------ccCc--------CC----------CCceEEecC---
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWKK--------YS----------YDRLRLHLA---   59 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg------~w~~--------~~----------~~~~~~~~~---   59 (303)
                      +.||+|||||++|+++|..|++.|++|+|+|+.+..+.      .+..        ..          ...+.....   
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~   83 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA   83 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence            47999999999999999999999999999999875432      1110        00          011111100   


Q ss_pred             cccccCCCC-CCCCC--CC-CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090           60 KQFCQLPHL-PFPSS--YP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (303)
Q Consensus        60 ~~~~~~~~~-~~~~~--~~-~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (303)
                      .....++.. .+...  .+ ....+.++.+.|.+.+...+ ...+++++++++++.++  +.+.+.+.++       .+ 
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~v~~~~~~~v~~i~~~~--~~v~v~~~~g-------~~-  152 (396)
T PRK08163         84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHP-LVEFRTSTHVVGIEQDG--DGVTVFDQQG-------NR-  152 (396)
T ss_pred             CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcC-CcEEEeCCEEEEEecCC--CceEEEEcCC-------CE-
Confidence            000000000 00000  01 12467788888888776654 13348899999998654  4577776554       56 


Q ss_pred             EeeCEEEEccCCCCCC
Q 022090          136 YSGRFLVVASGETTNP  151 (303)
Q Consensus       136 ~~ad~vIlAtG~~~~p  151 (303)
                      +.+|.||.|+|.+|..
T Consensus       153 ~~ad~vV~AdG~~S~~  168 (396)
T PRK08163        153 WTGDALIGCDGVKSVV  168 (396)
T ss_pred             EecCEEEECCCcChHH
Confidence            8999999999987643

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.19  E-value=1.3e-10  Score=95.21  Aligned_cols=124  Identities=17%  Similarity=0.168  Sum_probs=79.1

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcc--------------------------
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQ--------------------------   61 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~--------------------------   61 (303)
                      .+|+|||+|++|++||..|+..|.+|++|||...+||-...+.-+....+....                          
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~   81 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT   81 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence            479999999999999999999999999999999999854332222211111111                          


Q ss_pred             --cccCCCC---CCCCC--CCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEE
Q 022090           62 --FCQLPHL---PFPSS--YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE  134 (303)
Q Consensus        62 --~~~~~~~---~~~~~--~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~  134 (303)
                        ...+...   +.++.  |...+.-..+..++.     -++++  .++++|+.+...+  +.|++..+++.      ..
T Consensus        82 ~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA-----tdL~V--~~~~rVt~v~~~~--~~W~l~~~~g~------~~  146 (331)
T COG3380          82 PAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA-----TDLTV--VLETRVTEVARTD--NDWTLHTDDGT------RH  146 (331)
T ss_pred             ccccccccCCCCCCCCCCccccCcchHHHHHHHh-----ccchh--hhhhhhhhheecC--CeeEEEecCCC------cc
Confidence              1111111   11111  111222233333222     24455  8999999998875  78999997753      45


Q ss_pred             EEeeCEEEEccCC
Q 022090          135 YYSGRFLVVASGE  147 (303)
Q Consensus       135 ~~~ad~vIlAtG~  147 (303)
                       ..+|.||+|.=.
T Consensus       147 -~~~d~vvla~PA  158 (331)
T COG3380         147 -TQFDDVVLAIPA  158 (331)
T ss_pred             -cccceEEEecCC
Confidence             789999999863

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.19  E-value=3e-10  Score=102.02  Aligned_cols=130  Identities=15%  Similarity=0.207  Sum_probs=82.7

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC--------CccCc-----------CCCCc-----------eEEec
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYA--------SIWKK-----------YSYDR-----------LRLHL   58 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g--------g~w~~-----------~~~~~-----------~~~~~   58 (303)
                      ||+|||||++|+++|..|+++|++|+|+|+.+..+        .....           ..++.           +....
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            79999999999999999999999999999987532        10100           00111           11111


Q ss_pred             Ccc--cccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcC-CCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEE
Q 022090           59 AKQ--FCQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE  134 (303)
Q Consensus        59 ~~~--~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~  134 (303)
                      ...  ...+....... ......++..+.+.|.+.+.+.+ ..  ++++++|++++..+  +.+.+.+.++       .+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~--v~~~~~v~~i~~~~--~~~~v~~~~g-------~~  149 (385)
T TIGR01988        81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVT--LLCPARVVELPRHS--DHVELTLDDG-------QQ  149 (385)
T ss_pred             CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcE--EecCCeEEEEEecC--CeeEEEECCC-------CE
Confidence            100  00011000000 01112457788888888887765 44  48999999998765  5677777654       46


Q ss_pred             EEeeCEEEEccCCCCC
Q 022090          135 YYSGRFLVVASGETTN  150 (303)
Q Consensus       135 ~~~ad~vIlAtG~~~~  150 (303)
                       +.+|.||.|+|.+|.
T Consensus       150 -~~~~~vi~adG~~S~  164 (385)
T TIGR01988       150 -LRARLLVGADGANSK  164 (385)
T ss_pred             -EEeeEEEEeCCCCCH
Confidence             899999999997663

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07588 hypothetical protein; Provisional

Probab=99.19  E-value=2.6e-10  Score=102.73  Aligned_cols=132  Identities=14%  Similarity=0.118  Sum_probs=82.5

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC--C-c---cCcC------------------CCCceEEecCc--c
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA--S-I---WKKY------------------SYDRLRLHLAK--Q   61 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g--g-~---w~~~------------------~~~~~~~~~~~--~   61 (303)
                      .||+|||||++|+++|..|++.|++|+|+|+.+...  | .   |...                  ....+......  .
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~   80 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR   80 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence            389999999999999999999999999999876432  1 1   1110                  01111111111  1


Q ss_pred             cccCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEee
Q 022090           62 FCQLPHLPFPSSYP---MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG  138 (303)
Q Consensus        62 ~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a  138 (303)
                      ...++...+.....   ...++..+...|.+.+.. +  ..++++++|++++.++  +.++|.+.++       .+ +++
T Consensus        81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~--v~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~~  147 (391)
T PRK07588         81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-Q--VETIFDDSIATIDEHR--DGVRVTFERG-------TP-RDF  147 (391)
T ss_pred             EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-C--eEEEeCCEEeEEEECC--CeEEEEECCC-------CE-EEe
Confidence            11111111111111   124567777777664432 3  4459999999998765  5688887764       46 789


Q ss_pred             CEEEEccCCCCCCC
Q 022090          139 RFLVVASGETTNPF  152 (303)
Q Consensus       139 d~vIlAtG~~~~p~  152 (303)
                      |.||.|+|.+|.-+
T Consensus       148 d~vIgADG~~S~vR  161 (391)
T PRK07588        148 DLVIGADGLHSHVR  161 (391)
T ss_pred             CEEEECCCCCccch
Confidence            99999999877533

>PRK07538 hypothetical protein; Provisional

Probab=99.19  E-value=2.1e-09  Score=97.61  Aligned_cols=136  Identities=18%  Similarity=0.226  Sum_probs=82.1

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC----Cc--cCc--------CC----------CCceEEecCc--c
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----SI--WKK--------YS----------YDRLRLHLAK--Q   61 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g----g~--w~~--------~~----------~~~~~~~~~~--~   61 (303)
                      .||+|||||++|+++|..|++.|++|+|||+.+...    |.  +..        ..          ..........  .
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~   80 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR   80 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence            389999999999999999999999999999987432    11  000        00          0111111110  0


Q ss_pred             cccCCCCCCCC--CCCC-CCCHHHHHHHHHHHHHH-cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEe
Q 022090           62 FCQLPHLPFPS--SYPM-FVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS  137 (303)
Q Consensus        62 ~~~~~~~~~~~--~~~~-~~~~~~l~~~l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~  137 (303)
                      ....+ .....  .++. ..++..+.+.|.+.+.+ .+. ..++++++|++++.++  +...+.+.++..+  +..+ ++
T Consensus        81 ~~~~~-~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~--~~~~~~~~~~~~g--~~~~-~~  153 (413)
T PRK07538         81 IWSEP-RGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDA--DVTVVFLGDRAGG--DLVS-VR  153 (413)
T ss_pred             Eeecc-CCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecC--CceEEEEeccCCC--ccce-EE
Confidence            00000 00000  1111 24678888888777654 453 2359999999998765  3345555443221  2257 89


Q ss_pred             eCEEEEccCCCCC
Q 022090          138 GRFLVVASGETTN  150 (303)
Q Consensus       138 ad~vIlAtG~~~~  150 (303)
                      +|.||.|+|.+|.
T Consensus       154 adlvIgADG~~S~  166 (413)
T PRK07538        154 GDVLIGADGIHSA  166 (413)
T ss_pred             eeEEEECCCCCHH
Confidence            9999999998774

>PRK11445 putative oxidoreductase; Provisional

Probab=99.18  E-value=5.7e-10  Score=99.03  Aligned_cols=133  Identities=14%  Similarity=0.130  Sum_probs=80.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC---------CC-ccCc--------CCC-CceEEecCcc----cc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY---------AS-IWKK--------YSY-DRLRLHLAKQ----FC   63 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~---------gg-~w~~--------~~~-~~~~~~~~~~----~~   63 (303)
                      ++||+||||||+|+++|..|++. ++|+++|+.+..         |+ .+..        ... +......+..    ..
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~   79 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI   79 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence            37999999999999999999999 999999987642         21 1110        000 0000000000    00


Q ss_pred             cCCC-CCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEE
Q 022090           64 QLPH-LPFPSSYPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL  141 (303)
Q Consensus        64 ~~~~-~~~~~~~~~-~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v  141 (303)
                      .+.. .......+. ..++.++.+.+.+.+ ..+++  +++++.+++++.++  +.|.|...+.+    +..+ +++|.|
T Consensus        80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~--v~~~~~v~~i~~~~--~~~~v~~~~~g----~~~~-i~a~~v  149 (351)
T PRK11445         80 DLANSLTRNYQRSYINIDRHKFDLWLKSLI-PASVE--VYHNSLCRKIWRED--DGYHVIFRADG----WEQH-ITARYL  149 (351)
T ss_pred             cccccchhhcCCCcccccHHHHHHHHHHHH-hcCCE--EEcCCEEEEEEEcC--CEEEEEEecCC----cEEE-EEeCEE
Confidence            0000 000001111 256888888777643 34544  48999999998765  56888764321    2247 899999


Q ss_pred             EEccCCCCC
Q 022090          142 VVASGETTN  150 (303)
Q Consensus       142 IlAtG~~~~  150 (303)
                      |.|+|.+|.
T Consensus       150 V~AdG~~S~  158 (351)
T PRK11445        150 VGADGANSM  158 (351)
T ss_pred             EECCCCCcH
Confidence            999998764

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.18  E-value=4.2e-10  Score=100.76  Aligned_cols=131  Identities=15%  Similarity=0.254  Sum_probs=84.1

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC-------C----------------CccCc-----CCCCceEEecC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-------A----------------SIWKK-----YSYDRLRLHLA   59 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~-------g----------------g~w~~-----~~~~~~~~~~~   59 (303)
                      +||+|||||++|+++|..|++.|++|+|+|+.+..       +                |.|..     ..+..+.....
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   81 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN   81 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence            68999999999999999999999999999986311       1                11210     01222222111


Q ss_pred             c--ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEe
Q 022090           60 K--QFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS  137 (303)
Q Consensus        60 ~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~  137 (303)
                      .  ....+.... ........++.++...|.+.+...+. ..++++++++++..++  +.+.|.+.+        .+ ++
T Consensus        82 ~g~~~~~~~~~~-~~~~g~~v~r~~L~~~L~~~~~~~~~-v~~~~~~~v~~i~~~~--~~v~v~~~~--------~~-~~  148 (374)
T PRK06617         82 KASEILDLRNDA-DAVLGYVVKNSDFKKILLSKITNNPL-ITLIDNNQYQEVISHN--DYSIIKFDD--------KQ-IK  148 (374)
T ss_pred             CCceEEEecCCC-CCCcEEEEEHHHHHHHHHHHHhcCCC-cEEECCCeEEEEEEcC--CeEEEEEcC--------CE-Ee
Confidence            1  111111100 00011224688899999888877652 3347899999997765  557777754        36 89


Q ss_pred             eCEEEEccCCCCCC
Q 022090          138 GRFLVVASGETTNP  151 (303)
Q Consensus       138 ad~vIlAtG~~~~p  151 (303)
                      +|.||.|+|.+|.-
T Consensus       149 adlvIgADG~~S~v  162 (374)
T PRK06617        149 CNLLIICDGANSKV  162 (374)
T ss_pred             eCEEEEeCCCCchh
Confidence            99999999987753

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.18  E-value=3.5e-10  Score=101.93  Aligned_cols=133  Identities=19%  Similarity=0.303  Sum_probs=82.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC----CC---------------------ccCc------CCCCce
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----AS---------------------IWKK------YSYDRL   54 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~----gg---------------------~w~~------~~~~~~   54 (303)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.+..    ++                     .|..      ..+..+
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~   83 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL   83 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence            4589999999999999999999999999999987521    11                     1110      001111


Q ss_pred             EEe-cCcccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCce
Q 022090           55 RLH-LAKQFCQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE  131 (303)
Q Consensus        55 ~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~  131 (303)
                      ... .......+....... ......++..+.+.|.+.++.. ++..  +++++|+++..++  +.+.|.+.++      
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~g------  153 (391)
T PRK08020         84 ETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTL--RCPASLQALQRDD--DGWELTLADG------  153 (391)
T ss_pred             EEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEE--EcCCeeEEEEEcC--CeEEEEECCC------
Confidence            110 000000000000000 0011245677888887777665 5544  8899999987665  5577877653      


Q ss_pred             eEEEEeeCEEEEccCCCCC
Q 022090          132 IEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       132 ~~~~~~ad~vIlAtG~~~~  150 (303)
                       .+ +++|.||.|+|.+|.
T Consensus       154 -~~-~~a~~vI~AdG~~S~  170 (391)
T PRK08020        154 -EE-IQAKLVIGADGANSQ  170 (391)
T ss_pred             -CE-EEeCEEEEeCCCCch
Confidence             46 899999999997663

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.16  E-value=5.3e-10  Score=100.60  Aligned_cols=130  Identities=14%  Similarity=0.187  Sum_probs=81.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC---CccCcC----------------CCCc-----------eEE
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---SIWKKY----------------SYDR-----------LRL   56 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g---g~w~~~----------------~~~~-----------~~~   56 (303)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+...   ..|..+                ..+.           +..
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~   84 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV   84 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence            4799999999999999999999999999999987542   122210                0000           000


Q ss_pred             ecCcccccCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHcC-CCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCcee
Q 022090           57 HLAKQFCQLPHLPFPSSYP---MFVSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI  132 (303)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~  132 (303)
                      ... ....+.........+   ...++..+.+.+.+.++..+ +..  + +++|+++...+  +.+.|++.++       
T Consensus        85 ~~~-~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~--~-~~~v~~i~~~~--~~~~v~~~~g-------  151 (388)
T PRK07608         85 FGD-AHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTW--F-PARAQGLEVDP--DAATLTLADG-------  151 (388)
T ss_pred             EEC-CCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEE--E-cceeEEEEecC--CeEEEEECCC-------
Confidence            000 000000000001111   11346788888888887765 443  5 88899987655  5577777654       


Q ss_pred             EEEEeeCEEEEccCCCCC
Q 022090          133 EEYYSGRFLVVASGETTN  150 (303)
Q Consensus       133 ~~~~~ad~vIlAtG~~~~  150 (303)
                      .+ +.+|.||.|+|.+|.
T Consensus       152 ~~-~~a~~vI~adG~~S~  168 (388)
T PRK07608        152 QV-LRADLVVGADGAHSW  168 (388)
T ss_pred             CE-EEeeEEEEeCCCCch
Confidence            46 899999999997664

>PRK09126 hypothetical protein; Provisional

Probab=99.16  E-value=6.6e-10  Score=100.13  Aligned_cols=132  Identities=17%  Similarity=0.194  Sum_probs=79.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC--------CC---ccCc--------CCCC-----------ceEE
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY--------AS---IWKK--------YSYD-----------RLRL   56 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~--------gg---~w~~--------~~~~-----------~~~~   56 (303)
                      .+||+|||||++|+++|..|+++|++|+|+|+.+..        |.   .+..        ..++           ....
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~   82 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV   82 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence            479999999999999999999999999999998642        21   1100        0111           1111


Q ss_pred             ecCccc--ccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHH-cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCcee
Q 022090           57 HLAKQF--CQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI  132 (303)
Q Consensus        57 ~~~~~~--~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~  132 (303)
                      ......  ..++.... ........++..+.+.+.+.+.. .++.  ++++++|++++.++  +.+.|.+.++       
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~--i~~~~~v~~~~~~~--~~~~v~~~~g-------  151 (392)
T PRK09126         83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIE--LLTGTRVTAVRTDD--DGAQVTLANG-------  151 (392)
T ss_pred             EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcE--EEcCCeEEEEEEcC--CeEEEEEcCC-------
Confidence            110000  00100000 00011113455666666555433 4544  49999999998765  4577777654       


Q ss_pred             EEEEeeCEEEEccCCCCC
Q 022090          133 EEYYSGRFLVVASGETTN  150 (303)
Q Consensus       133 ~~~~~ad~vIlAtG~~~~  150 (303)
                      .+ +.+|.||.|+|.+|.
T Consensus       152 ~~-~~a~~vI~AdG~~S~  168 (392)
T PRK09126        152 RR-LTARLLVAADSRFSA  168 (392)
T ss_pred             CE-EEeCEEEEeCCCCch
Confidence            46 899999999997664

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.16  E-value=1e-09  Score=98.92  Aligned_cols=136  Identities=15%  Similarity=0.139  Sum_probs=81.7

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC----ccCcC--------------CCCceEEecCcccc-cCCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS----IWKKY--------------SYDRLRLHLAKQFC-QLPHL   68 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg----~w~~~--------------~~~~~~~~~~~~~~-~~~~~   68 (303)
                      +||+||||||+|+++|..|+++|++|+++|+....+.    .....              ....+....+.... .+...
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~   80 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT   80 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence            4899999999999999999999999999999754322    11100              01111111111100 00100


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEe-CCCCeEEEEEeecC----CCCceeEEEEeeCEEEE
Q 022090           69 PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYD-EATNMWNVKASNLL----SPGREIEEYYSGRFLVV  143 (303)
Q Consensus        69 ~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~-~~~~~~~v~~~~~~----~~~~~~~~~~~ad~vIl  143 (303)
                      ..+..+....++..+.++|.+.+.+.|.+.  +.. +++++... ...+.+.|+.....    .+  +..+ ++++.||.
T Consensus        81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v--~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g--~~~~-i~a~~VIg  154 (398)
T TIGR02028        81 LKEHEYIGMLRREVLDSFLRRRAADAGATL--ING-LVTKLSLPADADDPYTLHYISSDSGGPSG--TRCT-LEVDAVIG  154 (398)
T ss_pred             CCCCCceeeeeHHHHHHHHHHHHHHCCcEE--Ecc-eEEEEEeccCCCceEEEEEeeccccccCC--CccE-EEeCEEEE
Confidence            001111123678899999999998888765  555 46666542 22355666653211    01  2257 89999999


Q ss_pred             ccCCCC
Q 022090          144 ASGETT  149 (303)
Q Consensus       144 AtG~~~  149 (303)
                      |+|.+|
T Consensus       155 ADG~~S  160 (398)
T TIGR02028       155 ADGANS  160 (398)
T ss_pred             CCCcch
Confidence            999765

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.16  E-value=6.5e-10  Score=99.40  Aligned_cols=122  Identities=24%  Similarity=0.324  Sum_probs=82.2

Q ss_pred             cEEEECCcHHHHHHHHHH--hhCCCCeEEEecCCCC--CC--ccCcC-------------CCCceEEecCcccccCCCCC
Q 022090            9 EVIMVGAGTSGLATAACL--SLQSIPYVILERENCY--AS--IWKKY-------------SYDRLRLHLAKQFCQLPHLP   69 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l--~~~g~~v~iie~~~~~--gg--~w~~~-------------~~~~~~~~~~~~~~~~~~~~   69 (303)
                      ||+|||||+||+++|.+|  ++.|.+|+|+|++...  +.  +|..-             .++...+..+..-...    
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~----   76 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL----   76 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEE----
Confidence            799999999999999999  7779999999998765  22  23221             1111111111110000    


Q ss_pred             CCCCCC-CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090           70 FPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (303)
Q Consensus        70 ~~~~~~-~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~  148 (303)
                        ..++ ...++..+.+++.+.+...+ .  ++++..|++|+..+  +.+.|.+.++       .+ ++++.||.|+|..
T Consensus        77 --~~~~Y~~i~~~~f~~~l~~~~~~~~-~--~~~~~~V~~i~~~~--~~~~v~~~~g-------~~-i~a~~VvDa~g~~  141 (374)
T PF05834_consen   77 --IDYPYCMIDRADFYEFLLERAAAGG-V--IRLNARVTSIEETG--DGVLVVLADG-------RT-IRARVVVDARGPS  141 (374)
T ss_pred             --cccceEEEEHHHHHHHHHHHhhhCC-e--EEEccEEEEEEecC--ceEEEEECCC-------CE-EEeeEEEECCCcc
Confidence              0011 13578889999888887433 2  38889999998876  4677777765       57 8999999999954


Q ss_pred             C
Q 022090          149 T  149 (303)
Q Consensus       149 ~  149 (303)
                      +
T Consensus       142 ~  142 (374)
T PF05834_consen  142 S  142 (374)
T ss_pred             c
Confidence            3

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.16  E-value=8.9e-10  Score=100.56  Aligned_cols=137  Identities=12%  Similarity=0.120  Sum_probs=82.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC----CCccCcCC--------------CCceEEecCccc-ccCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----ASIWKKYS--------------YDRLRLHLAKQF-CQLPH   67 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~----gg~w~~~~--------------~~~~~~~~~~~~-~~~~~   67 (303)
                      .+||+||||||+|+++|..|++.|++|+|+|+....    ||......              ...+.+..+... ..+..
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~  118 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK  118 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence            589999999999999999999999999999987421    21100000              011111111110 00110


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeC-CCCeEEEEEeecC----CCCceeEEEEeeCEEE
Q 022090           68 LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDE-ATNMWNVKASNLL----SPGREIEEYYSGRFLV  142 (303)
Q Consensus        68 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~-~~~~~~v~~~~~~----~~~~~~~~~~~ad~vI  142 (303)
                      ...+..+-...++..+.++|.+.+.+.|.+.  +.. .+++++... .++.+.|.+.+..    .+  +..+ ++++.||
T Consensus       119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~--~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g--~~~~-v~a~~VI  192 (450)
T PLN00093        119 TLKPHEYIGMVRREVLDSFLRERAQSNGATL--ING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAG--TPKT-LEVDAVI  192 (450)
T ss_pred             cCCCCCeEEEecHHHHHHHHHHHHHHCCCEE--Eec-eEEEEEeccCCCCcEEEEEEeccccccCC--CccE-EEeCEEE
Confidence            0001011112688999999999998888764  544 577776432 2345667664320    01  2257 8999999


Q ss_pred             EccCCCC
Q 022090          143 VASGETT  149 (303)
Q Consensus       143 lAtG~~~  149 (303)
                      .|+|.+|
T Consensus       193 gADG~~S  199 (450)
T PLN00093        193 GADGANS  199 (450)
T ss_pred             EcCCcch
Confidence            9999766

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.16  E-value=3.9e-10  Score=103.06  Aligned_cols=136  Identities=17%  Similarity=0.275  Sum_probs=82.9

Q ss_pred             CcEEEECCcHHHHHHHHHHhh----CCCCeEEEecCC--CCC--------C---------------------ccCc----
Q 022090            8 VEVIMVGAGTSGLATAACLSL----QSIPYVILEREN--CYA--------S---------------------IWKK----   48 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~----~g~~v~iie~~~--~~g--------g---------------------~w~~----   48 (303)
                      +||+|||||++|+++|..|++    .|++|+|+|+.+  ..-        +                     .|..    
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~   80 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD   80 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence            689999999999999999998    799999999943  211        1                     1110    


Q ss_pred             --CCCCceEEecCcc--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCC-CceeEeCeEEEEEEEe-----CCCCeE
Q 022090           49 --YSYDRLRLHLAKQ--FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNI-GPSIRYQRSVESASYD-----EATNMW  118 (303)
Q Consensus        49 --~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l-~~~i~~~~~V~~i~~~-----~~~~~~  118 (303)
                        ..+..+.......  ...+.............++..+...|.+.+...+- ...++++++|++++.+     +.....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v  160 (437)
T TIGR01989        81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV  160 (437)
T ss_pred             cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence              0011111111110  01111110000011124677888888887776541 2345899999999753     223456


Q ss_pred             EEEEeecCCCCceeEEEEeeCEEEEccCCCCCC
Q 022090          119 NVKASNLLSPGREIEEYYSGRFLVVASGETTNP  151 (303)
Q Consensus       119 ~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p  151 (303)
                      +|.+.++       ++ +++|.||.|+|.+|.-
T Consensus       161 ~v~~~~g-------~~-i~a~llVgADG~~S~v  185 (437)
T TIGR01989       161 HITLSDG-------QV-LYTKLLIGADGSNSNV  185 (437)
T ss_pred             EEEEcCC-------CE-EEeeEEEEecCCCChh
Confidence            7777654       57 8999999999987743

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07236 hypothetical protein; Provisional

Probab=99.15  E-value=1.7e-09  Score=97.26  Aligned_cols=129  Identities=15%  Similarity=0.170  Sum_probs=77.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC----CC-c--cCc--------CCCCceEEecCc---cccc---
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----AS-I--WKK--------YSYDRLRLHLAK---QFCQ---   64 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~----gg-~--w~~--------~~~~~~~~~~~~---~~~~---   64 (303)
                      ...+|+|||||++|+++|..|++.|++|+|+|+.+..    |+ .  +..        ...+......+.   .+..   
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g   84 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG   84 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence            4579999999999999999999999999999997632    11 0  100        000000000000   0000   


Q ss_pred             --CCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEE
Q 022090           65 --LPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV  142 (303)
Q Consensus        65 --~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI  142 (303)
                        +...+.+   .....+..+.+.+.+   .+. ...++++++|++++.++  +.++|.+.++       .+ +.+|.||
T Consensus        85 ~~~~~~~~~---~~~~~~~~l~~~L~~---~~~-~~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~ad~vI  147 (386)
T PRK07236         85 RVVQRRPMP---QTQTSWNVLYRALRA---AFP-AERYHLGETLVGFEQDG--DRVTARFADG-------RR-ETADLLV  147 (386)
T ss_pred             CEeeccCCC---ccccCHHHHHHHHHH---hCC-CcEEEcCCEEEEEEecC--CeEEEEECCC-------CE-EEeCEEE
Confidence              0000000   011244455554443   222 12458999999998765  5678887764       56 8999999


Q ss_pred             EccCCCCCC
Q 022090          143 VASGETTNP  151 (303)
Q Consensus       143 lAtG~~~~p  151 (303)
                      .|.|.+|.-
T Consensus       148 gADG~~S~v  156 (386)
T PRK07236        148 GADGGRSTV  156 (386)
T ss_pred             ECCCCCchH
Confidence            999987753

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.15  E-value=1.1e-09  Score=98.60  Aligned_cols=137  Identities=16%  Similarity=0.132  Sum_probs=80.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC---C----C--------------ccCc-----CCCCceEEecCc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY---A----S--------------IWKK-----YSYDRLRLHLAK   60 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~---g----g--------------~w~~-----~~~~~~~~~~~~   60 (303)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+..   +    +              .|..     .....+.+....
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g   81 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG   81 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence            369999999999999999999999999999998641   1    1              1100     011112111111


Q ss_pred             ccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeC
Q 022090           61 QFCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR  139 (303)
Q Consensus        61 ~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad  139 (303)
                      ....+.......... ...++..+.+.+.+.+...+.+.  ++++++++++..+ .+...|++...+    +..+ +++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v--~~~~~v~~i~~~~-~~~~~V~~~~~G----~~~~-i~ad  153 (392)
T PRK08243         82 RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPI--RFEASDVALHDFD-SDRPYVTYEKDG----EEHR-LDCD  153 (392)
T ss_pred             EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeE--EEeeeEEEEEecC-CCceEEEEEcCC----eEEE-EEeC
Confidence            111111100000000 11234566666666666666555  9999999887522 233445553211    3357 8999


Q ss_pred             EEEEccCCCCCC
Q 022090          140 FLVVASGETTNP  151 (303)
Q Consensus       140 ~vIlAtG~~~~p  151 (303)
                      .||.|+|.+|.-
T Consensus       154 ~vVgADG~~S~v  165 (392)
T PRK08243        154 FIAGCDGFHGVS  165 (392)
T ss_pred             EEEECCCCCCch
Confidence            999999987743

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.15  E-value=3.6e-10  Score=101.50  Aligned_cols=130  Identities=19%  Similarity=0.199  Sum_probs=81.6

Q ss_pred             cEEEECCcHHHHHHHHHHhhCC-CCeEEEecCCCCCC----------ccCc--------CCCC----------ceEEecC
Q 022090            9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENCYAS----------IWKK--------YSYD----------RLRLHLA   59 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~~~gg----------~w~~--------~~~~----------~~~~~~~   59 (303)
                      ||+|||||++|+++|..|+++| ++|+|+|+.+...-          .+..        ..++          .......
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            7999999999999999999999 99999999764211          1100        0000          1111000


Q ss_pred             cc--cccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090           60 KQ--FCQLPHLPFPSSYPM-FVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (303)
Q Consensus        60 ~~--~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (303)
                      ..  ...+....+...... ..++.++.+.|.+.+... +++.  +++++|+++..++  +.++|.+.++       .+ 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-  148 (382)
T TIGR01984        81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQL--YCPARYKEIIRNQ--DYVRVTLDNG-------QQ-  148 (382)
T ss_pred             CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEE--EcCCeEEEEEEcC--CeEEEEECCC-------CE-
Confidence            00  000000000000011 145778888888888764 6555  8899999998765  5577877653       46 


Q ss_pred             EeeCEEEEccCCCCC
Q 022090          136 YSGRFLVVASGETTN  150 (303)
Q Consensus       136 ~~ad~vIlAtG~~~~  150 (303)
                      +.+|.||.|+|.+|.
T Consensus       149 ~~ad~vV~AdG~~S~  163 (382)
T TIGR01984       149 LRAKLLIAADGANSK  163 (382)
T ss_pred             EEeeEEEEecCCChH
Confidence            899999999997663

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.13  E-value=9.9e-10  Score=99.47  Aligned_cols=132  Identities=18%  Similarity=0.251  Sum_probs=79.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC-CC--CC---------------------CccCcC------CCCceEE
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NC--YA---------------------SIWKKY------SYDRLRL   56 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~-~~--~g---------------------g~w~~~------~~~~~~~   56 (303)
                      .+||+|||||++|+++|..|++.|++|+|+|+. +.  .+                     |.|..-      .+..+..
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~   83 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV   83 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence            479999999999999999999999999999986 21  11                     111110      0111111


Q ss_pred             ecCccc--ccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCcee
Q 022090           57 HLAKQF--CQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI  132 (303)
Q Consensus        57 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~  132 (303)
                      ......  ..+....... .......+..+...|.+.+... ++.  ++++++|++++.++  +.+.|.+.++       
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~--v~~~~~v~~i~~~~--~~~~v~~~~g-------  152 (405)
T PRK08850         84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVT--LLMPARCQSIAVGE--SEAWLTLDNG-------  152 (405)
T ss_pred             EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeE--EEcCCeeEEEEeeC--CeEEEEECCC-------
Confidence            111100  0010000000 0011123556666666666553 344  48899999998765  4567777654       


Q ss_pred             EEEEeeCEEEEccCCCCC
Q 022090          133 EEYYSGRFLVVASGETTN  150 (303)
Q Consensus       133 ~~~~~ad~vIlAtG~~~~  150 (303)
                      ++ +++|.||.|+|.+|.
T Consensus       153 ~~-~~a~lvIgADG~~S~  169 (405)
T PRK08850        153 QA-LTAKLVVGADGANSW  169 (405)
T ss_pred             CE-EEeCEEEEeCCCCCh
Confidence            56 899999999997664

>TIGR00275 flavoprotein, HI0933 family

Probab=99.12  E-value=8.6e-10  Score=99.43  Aligned_cols=128  Identities=20%  Similarity=0.323  Sum_probs=82.3

Q ss_pred             EEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEec---Ccc---------------cccCC------
Q 022090           11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHL---AKQ---------------FCQLP------   66 (303)
Q Consensus        11 vIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~---~~~---------------~~~~~------   66 (303)
                      +|||||++|+++|..|++.|.+|+|+|+++..|+.+....--.+....   ...               +..+.      
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~   80 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID   80 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence            699999999999999999999999999998887643211000000000   000               00000      


Q ss_pred             -----CCCCC--C---CCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEE
Q 022090           67 -----HLPFP--S---SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY  136 (303)
Q Consensus        67 -----~~~~~--~---~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~  136 (303)
                           ..++.  .   .++.......+.+.+.+.+++.++..  ++++.|+++...+  +.|.+....        .. +
T Consensus        81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i--~~~~~V~~i~~~~--~~~~v~~~~--------~~-i  147 (400)
T TIGR00275        81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEI--LTNSKVKSIKKDD--NGFGVETSG--------GE-Y  147 (400)
T ss_pred             HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEE--EeCCEEEEEEecC--CeEEEEECC--------cE-E
Confidence                 00000  0   01111235778888888888888665  8999999997654  567776632        46 8


Q ss_pred             eeCEEEEccCCCCCC
Q 022090          137 SGRFLVVASGETTNP  151 (303)
Q Consensus       137 ~ad~vIlAtG~~~~p  151 (303)
                      .+|.||+|+|..+.|
T Consensus       148 ~ad~VIlAtG~~s~p  162 (400)
T TIGR00275       148 EADKVILATGGLSYP  162 (400)
T ss_pred             EcCEEEECCCCcccC
Confidence            999999999976644

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.12  E-value=3.1e-09  Score=101.03  Aligned_cols=142  Identities=20%  Similarity=0.217  Sum_probs=86.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhC-CCCeEEEecCCCCC--C----ccCc-----------------C-CCCceEEecCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYA--S----IWKK-----------------Y-SYDRLRLHLAK   60 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~iie~~~~~g--g----~w~~-----------------~-~~~~~~~~~~~   60 (303)
                      ..+||+||||||+||++|..|++. |++|+|+|+.+...  |    .+..                 . ....+....+.
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~  110 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD  110 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence            467999999999999999999995 99999999876321  1    1100                 0 00111111100


Q ss_pred             -----ccc---cCCCCCCC-CCCC-CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCC-CeEEEEEeecC---
Q 022090           61 -----QFC---QLPHLPFP-SSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT-NMWNVKASNLL---  126 (303)
Q Consensus        61 -----~~~---~~~~~~~~-~~~~-~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~-~~~~v~~~~~~---  126 (303)
                           .+.   .+...+.. ..++ ...++..+.+.|.+.+...+....+++++++++++.++.. ...+|++.+..   
T Consensus       111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~  190 (634)
T PRK08294        111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH  190 (634)
T ss_pred             CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence                 000   00000000 0111 1245677888888888776654445889999999876422 34667776421   


Q ss_pred             CCCceeEEEEeeCEEEEccCCCCC
Q 022090          127 SPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       127 ~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      ++  +.++ +++|+||.|+|.+|.
T Consensus       191 ~g--~~~t-v~A~~lVGaDGa~S~  211 (634)
T PRK08294        191 EG--EEET-VRAKYVVGCDGARSR  211 (634)
T ss_pred             CC--ceEE-EEeCEEEECCCCchH
Confidence            11  2357 899999999998774

>PLN02697 lycopene epsilon cyclase

Probab=99.12  E-value=1.8e-09  Score=99.73  Aligned_cols=130  Identities=18%  Similarity=0.241  Sum_probs=81.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC---CccCcCCCCceEEec------CcccccCCCC-CCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---SIWKKYSYDRLRLHL------AKQFCQLPHL-PFPSSYP   75 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g---g~w~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~   75 (303)
                      ..+||+|||||++|+++|..|++.|++|+++|+.....   |.|... ...+.+..      +.....++.. +.....+
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~-l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~  185 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE-FKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA  185 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH-HHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence            35899999999999999999999999999999864433   344321 11110000      0000000000 0000001


Q ss_pred             -CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEE-EEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           76 -MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV-KASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        76 -~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v-~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                       ...++..+.+.+.+.+...++.   .++++|+.+..++  +.+.+ ...++       .+ +.++.||+|+|..+
T Consensus       186 Yg~V~R~~L~~~Ll~~a~~~GV~---~~~~~V~~I~~~~--~~~~vv~~~dG-------~~-i~A~lVI~AdG~~S  248 (529)
T PLN02697        186 YGRVSRTLLHEELLRRCVESGVS---YLSSKVDRITEAS--DGLRLVACEDG-------RV-IPCRLATVASGAAS  248 (529)
T ss_pred             ccEEcHHHHHHHHHHHHHhcCCE---EEeeEEEEEEEcC--CcEEEEEEcCC-------cE-EECCEEEECCCcCh
Confidence             1257888889998888777754   4677898887654  33443 33332       56 89999999999866

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.11  E-value=1.5e-09  Score=97.75  Aligned_cols=134  Identities=16%  Similarity=0.112  Sum_probs=77.5

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC------C-C-ccCc--------C----------CCCceEEecCcc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY------A-S-IWKK--------Y----------SYDRLRLHLAKQ   61 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~------g-g-~w~~--------~----------~~~~~~~~~~~~   61 (303)
                      +||+|||||++|+++|..|++.|++|+|+|+.+..      + + .+..        .          ....+.......
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   82 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ   82 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence            69999999999999999999999999999998741      1 1 1100        0          011111111111


Q ss_pred             cccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEe-ecCCCCceeEEEEeeC
Q 022090           62 FCQLPHLPFPSSYPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEYYSGR  139 (303)
Q Consensus        62 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~~~ad  139 (303)
                      ...+.........+. ...+..+...|.+.+...+...  +++++++.+...+ .....|++. ++     +..+ +++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~--~~~~~~v~~~~~~-~~~~~V~~~~~g-----~~~~-i~ad  153 (390)
T TIGR02360        83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTT--VYDADDVRLHDLA-GDRPYVTFERDG-----ERHR-LDCD  153 (390)
T ss_pred             EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeE--EEeeeeEEEEecC-CCccEEEEEECC-----eEEE-EEeC
Confidence            111110000000010 1134456666666666666544  8888877765422 133456664 33     2247 8999


Q ss_pred             EEEEccCCCCC
Q 022090          140 FLVVASGETTN  150 (303)
Q Consensus       140 ~vIlAtG~~~~  150 (303)
                      .||.|+|.+|.
T Consensus       154 lvIGADG~~S~  164 (390)
T TIGR02360       154 FIAGCDGFHGV  164 (390)
T ss_pred             EEEECCCCchh
Confidence            99999998774

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.10  E-value=1.6e-09  Score=97.68  Aligned_cols=131  Identities=18%  Similarity=0.214  Sum_probs=78.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC---CCCeEEEecCCCC-----C------CccCc--------CCCCc----------e
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCY-----A------SIWKK--------YSYDR----------L   54 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~---g~~v~iie~~~~~-----g------g~w~~--------~~~~~----------~   54 (303)
                      .+||+|||||++|+++|..|+++   |++|+|+|+....     +      +.+..        ..++.          +
T Consensus         3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~   82 (395)
T PRK05732          3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI   82 (395)
T ss_pred             cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence            47999999999999999999998   9999999995211     0      01100        01111          1


Q ss_pred             EEecCcccc--cCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCc
Q 022090           55 RLHLAKQFC--QLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR  130 (303)
Q Consensus        55 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~  130 (303)
                      .........  .+.......... ....+..+...+.+.+... ++.  ++++++|+++...+  +.|.|++.++     
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~--~~~~~~v~~i~~~~--~~~~v~~~~g-----  153 (395)
T PRK05732         83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVT--LHCPARVANVERTQ--GSVRVTLDDG-----  153 (395)
T ss_pred             EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCEEEEEEEcC--CeEEEEECCC-----
Confidence            100000000  000000000000 1234566667776666543 444  48899999997654  5688877654     


Q ss_pred             eeEEEEeeCEEEEccCCCC
Q 022090          131 EIEEYYSGRFLVVASGETT  149 (303)
Q Consensus       131 ~~~~~~~ad~vIlAtG~~~  149 (303)
                        .. +.+|.||.|+|.++
T Consensus       154 --~~-~~a~~vI~AdG~~S  169 (395)
T PRK05732        154 --ET-LTGRLLVAADGSHS  169 (395)
T ss_pred             --CE-EEeCEEEEecCCCh
Confidence              46 89999999999765

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.09  E-value=1.9e-09  Score=97.48  Aligned_cols=134  Identities=18%  Similarity=0.168  Sum_probs=82.7

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC---C---ccCc--------CCCC----------ceEEecCccc-
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---S---IWKK--------YSYD----------RLRLHLAKQF-   62 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g---g---~w~~--------~~~~----------~~~~~~~~~~-   62 (303)
                      .+|+|||||++|+++|..|++.|++|+|+|+.+...   .   .+..        ..++          .+........ 
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            589999999999999999999999999999987532   1   0110        0000          1111100000 


Q ss_pred             --ccCCCCCCC-CCC-CC--CCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090           63 --CQLPHLPFP-SSY-PM--FVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (303)
Q Consensus        63 --~~~~~~~~~-~~~-~~--~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (303)
                        ......... ..+ ..  ..++..+.+.|.+.+... ++.  ++++++|++++.++  +.+++++.++.++    .+ 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~--v~~~~~v~~~~~~~--~~v~v~~~~~~~~----~~-  153 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIE--IKLGAEMTSQRQTG--NSITATIIRTNSV----ET-  153 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcE--EEECCEEEEEecCC--CceEEEEEeCCCC----cE-
Confidence              000000000 000 11  236788888888877653 444  48999999997654  5577776543322    46 


Q ss_pred             EeeCEEEEccCCCCC
Q 022090          136 YSGRFLVVASGETTN  150 (303)
Q Consensus       136 ~~ad~vIlAtG~~~~  150 (303)
                      +++|.||.|+|.+|.
T Consensus       154 ~~adlvIgADG~~S~  168 (400)
T PRK06475        154 VSAAYLIACDGVWSM  168 (400)
T ss_pred             EecCEEEECCCccHh
Confidence            899999999998774

>PRK05868 hypothetical protein; Validated

Probab=99.09  E-value=3.2e-09  Score=94.97  Aligned_cols=131  Identities=15%  Similarity=0.104  Sum_probs=77.7

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc------cCc------------------CCCCceEEecCcc--
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI------WKK------------------YSYDRLRLHLAKQ--   61 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~------w~~------------------~~~~~~~~~~~~~--   61 (303)
                      +||+|||||++|+++|..|++.|++|+|+|+.+.....      +..                  .....+.......  
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   81 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE   81 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence            58999999999999999999999999999998654310      000                  0111111111110  


Q ss_pred             cccCCC-CCCCCC--CCC-CCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEe
Q 022090           62 FCQLPH-LPFPSS--YPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS  137 (303)
Q Consensus        62 ~~~~~~-~~~~~~--~~~-~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~  137 (303)
                      ...... .+....  .+. ...+.++.+.+.+.+ ..+  ..++++++|++++.++  +..+|++.++       .+ ++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~--v~i~~~~~v~~i~~~~--~~v~v~~~dg-------~~-~~  148 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPS--VEYLFDDSISTLQDDG--DSVRVTFERA-------AA-RE  148 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCC--cEEEeCCEEEEEEecC--CeEEEEECCC-------Ce-EE
Confidence            000000 000000  000 112455555544322 224  3459999999997654  5677877765       46 79


Q ss_pred             eCEEEEccCCCCCC
Q 022090          138 GRFLVVASGETTNP  151 (303)
Q Consensus       138 ad~vIlAtG~~~~p  151 (303)
                      +|.||.|+|.+|.-
T Consensus       149 adlvIgADG~~S~v  162 (372)
T PRK05868        149 FDLVIGADGLHSNV  162 (372)
T ss_pred             eCEEEECCCCCchH
Confidence            99999999987743

>PRK06996 hypothetical protein; Provisional

Probab=99.09  E-value=1.7e-09  Score=97.76  Aligned_cols=132  Identities=16%  Similarity=0.234  Sum_probs=83.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCC----CCeEEEecCCCCC---------------------CccCcCCC--CceEEec
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQS----IPYVILERENCYA---------------------SIWKKYSY--DRLRLHL   58 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g----~~v~iie~~~~~g---------------------g~w~~~~~--~~~~~~~   58 (303)
                      ..+||+||||||+|+++|..|++.|    .+|+++|+.+...                     |.|.....  ..+....
T Consensus        10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~   89 (398)
T PRK06996         10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ   89 (398)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence            4579999999999999999999987    4699999975221                     12221111  1111111


Q ss_pred             Ccc----cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEE
Q 022090           59 AKQ----FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE  134 (303)
Q Consensus        59 ~~~----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~  134 (303)
                      ...    .....+...+. .....++..+.+.|.+.+...++..  ++++++++++.+.  +.+++.+.++.++    .+
T Consensus        90 ~~~~g~~~~~~~~~~~~~-~g~~v~r~~l~~~L~~~~~~~g~~~--~~~~~v~~~~~~~--~~v~v~~~~~~g~----~~  160 (398)
T PRK06996         90 RGHFGRTLIDRDDHDVPA-LGYVVRYGSLVAALARAVRGTPVRW--LTSTTAHAPAQDA--DGVTLALGTPQGA----RT  160 (398)
T ss_pred             CCCCceEEecccccCCCc-CEEEEEhHHHHHHHHHHHHhCCCEE--EcCCeeeeeeecC--CeEEEEECCCCcc----eE
Confidence            000    00011111110 0112467889999998888877544  8899999987654  5678877654221    57


Q ss_pred             EEeeCEEEEccCC
Q 022090          135 YYSGRFLVVASGE  147 (303)
Q Consensus       135 ~~~ad~vIlAtG~  147 (303)
                       +++|.||.|+|.
T Consensus       161 -i~a~lvIgADG~  172 (398)
T PRK06996        161 -LRARIAVQAEGG  172 (398)
T ss_pred             -EeeeEEEECCCC
Confidence             899999999995

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.09  E-value=1.7e-09  Score=97.15  Aligned_cols=132  Identities=12%  Similarity=0.138  Sum_probs=78.1

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC-----CC--C-----ccCc--------CCCCce-----------EE
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC-----YA--S-----IWKK--------YSYDRL-----------RL   56 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~-----~g--g-----~w~~--------~~~~~~-----------~~   56 (303)
                      +||+|||||++|+++|..|++.|++|+|||+.+.     .|  +     .+..        ..++.+           ..
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~   83 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET   83 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence            7999999999999999999999999999998641     11  0     1110        011111           10


Q ss_pred             ecC-cccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEE
Q 022090           57 HLA-KQFCQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE  134 (303)
Q Consensus        57 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~  134 (303)
                      ... .....+....... .......+..+...+.+.+...+ ...++++++|++++.++  +.++|++.++       .+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~-~i~i~~~~~v~~~~~~~--~~~~v~~~~g-------~~  153 (384)
T PRK08849         84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYP-NLTLMCPEKLADLEFSA--EGNRVTLESG-------AE  153 (384)
T ss_pred             EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCC-CeEEECCCceeEEEEcC--CeEEEEECCC-------CE
Confidence            000 0000000000000 00111233455555655555442 23448899999998765  4577887764       56


Q ss_pred             EEeeCEEEEccCCCCC
Q 022090          135 YYSGRFLVVASGETTN  150 (303)
Q Consensus       135 ~~~ad~vIlAtG~~~~  150 (303)
                       +++|.||.|+|.+|.
T Consensus       154 -~~~~lvIgADG~~S~  168 (384)
T PRK08849        154 -IEAKWVIGADGANSQ  168 (384)
T ss_pred             -EEeeEEEEecCCCch
Confidence             899999999998774

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.08  E-value=1.1e-09  Score=97.07  Aligned_cols=59  Identities=20%  Similarity=0.233  Sum_probs=46.6

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEE-EEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        78 ~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      .+...+...+.+.+++.|.+.  +.+++|++++.++  +.|+ |.+.+        .. +.+|.||+|+|.++
T Consensus       144 i~~~~l~~~l~~~~~~~Gv~i--~~~~~V~~i~~~~--~~v~gv~~~~--------g~-i~ad~vV~a~G~~s  203 (358)
T PF01266_consen  144 IDPRRLIQALAAEAQRAGVEI--RTGTEVTSIDVDG--GRVTGVRTSD--------GE-IRADRVVLAAGAWS  203 (358)
T ss_dssp             EEHHHHHHHHHHHHHHTT-EE--EESEEEEEEEEET--TEEEEEEETT--------EE-EEECEEEE--GGGH
T ss_pred             ccccchhhhhHHHHHHhhhhc--cccccccchhhcc--cccccccccc--------cc-cccceeEecccccc
Confidence            346889999999999888666  9999999999887  6677 88876        46 89999999999644

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.06  E-value=2.4e-09  Score=97.26  Aligned_cols=128  Identities=16%  Similarity=0.188  Sum_probs=78.8

Q ss_pred             cEEEECCcHHHHHHHHHHhhCC-CCeEEEecCCCCCCc------cCc--------CCCC--------------ceEEec-
Q 022090            9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASI------WKK--------YSYD--------------RLRLHL-   58 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~~~gg~------w~~--------~~~~--------------~~~~~~-   58 (303)
                      +|+|||||++||++|..|+++| ++|+|+|+.+..+..      +..        ...+              ...... 
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            7999999999999999999998 599999998765421      111        0000              000000 


Q ss_pred             CcccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEe
Q 022090           59 AKQFCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS  137 (303)
Q Consensus        59 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~  137 (303)
                      ......+.........+ ....+.++.+.|.+.+..    ..++++++|++++..+  +.|.|.+.++       .+ ++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~v~~~~~v~~i~~~~--~~~~v~~~~g-------~~-~~  147 (414)
T TIGR03219        82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE----GIASFGKRATQIEEQA--EEVQVLFTDG-------TE-YR  147 (414)
T ss_pred             ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC----ceEEcCCEEEEEEecC--CcEEEEEcCC-------CE-EE
Confidence            00000000000000111 124567777777665432    2348899999998765  5588888764       46 89


Q ss_pred             eCEEEEccCCCCC
Q 022090          138 GRFLVVASGETTN  150 (303)
Q Consensus       138 ad~vIlAtG~~~~  150 (303)
                      +|.||+|+|.+|.
T Consensus       148 ad~vVgADG~~S~  160 (414)
T TIGR03219       148 CDLLIGADGIKSA  160 (414)
T ss_pred             eeEEEECCCccHH
Confidence            9999999998764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.04  E-value=8.9e-09  Score=94.23  Aligned_cols=136  Identities=19%  Similarity=0.171  Sum_probs=83.4

Q ss_pred             cEEEECCcHHHHHHHHHHhhCC-CCeEEEecCCCCCCccC--------cCC-------C-Cce-------------EEe-
Q 022090            9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWK--------KYS-------Y-DRL-------------RLH-   57 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~~~gg~w~--------~~~-------~-~~~-------------~~~-   57 (303)
                      ||+|||+|.+|+++|..++++| .+|+|+||.+..||.-.        ...       . ...             ..+ 
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP   80 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence            7999999999999999999999 99999999887665311        100       0 000             000 


Q ss_pred             --------cC----cccc-cCCC----------CCCCCC-CC--CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEE
Q 022090           58 --------LA----KQFC-QLPH----------LPFPSS-YP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASY  111 (303)
Q Consensus        58 --------~~----~~~~-~~~~----------~~~~~~-~~--~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~  111 (303)
                              ..    ..+. ....          ..++.. .+  .......+.+.+.+.+++.+++.  ++++.|+++..
T Consensus        81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i--~~~~~v~~l~~  158 (439)
T TIGR01813        81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDT--RLNSKVEDLIQ  158 (439)
T ss_pred             HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEE--EeCCEeeEeEE
Confidence                    00    0000 0000          000000 00  11244678888888888888765  99999999987


Q ss_pred             eCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090          112 DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       112 ~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      +++...+.|...+..+   +... +.++.||+|||.++.
T Consensus       159 ~~~g~v~Gv~~~~~~g---~~~~-~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       159 DDQGTVVGVVVKGKGK---GIYI-KAAKAVVLATGGFGS  193 (439)
T ss_pred             CCCCcEEEEEEEeCCC---eEEE-EecceEEEecCCCCC
Confidence            6533344444443211   2245 789999999997664

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.04  E-value=3e-09  Score=85.09  Aligned_cols=134  Identities=17%  Similarity=0.220  Sum_probs=75.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC-ccCcC-CCCceEEecCcccc----cCCCCCCCCCCCCCCCH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKY-SYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSR   80 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg-~w~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   80 (303)
                      .+||+||||||+||+||+.|++.|++|++||++..+|| .|... .++.+.+..+....    ..++.++.+. -...+.
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g-~~v~d~   95 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDG-YYVADS   95 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSE-EEES-H
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCe-EEEEcH
Confidence            47999999999999999999999999999999887775 68653 46666665543211    1111111110 011356


Q ss_pred             HHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeE-EEEEe------ecCCCCceeEEEEeeCEEEEccCC
Q 022090           81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKAS------NLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        81 ~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~------~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      .++...|...+-+.|...  +..+.|+++-..++ ++. -|..+      .+..  ..... ++++.||-|||+
T Consensus        96 ~~~~s~L~s~a~~aGaki--fn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glH--vDPl~-i~ak~ViDaTGH  163 (230)
T PF01946_consen   96 VEFTSTLASKAIDAGAKI--FNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLH--VDPLT-IRAKVVIDATGH  163 (230)
T ss_dssp             HHHHHHHHHHHHTTTEEE--EETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T---B-EE-EEESEEEE---S
T ss_pred             HHHHHHHHHHHhcCCCEE--EeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcC--CCcce-EEEeEEEeCCCC
Confidence            677777777666666554  77788888876652 221 12211      1101  12257 899999999996

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.03  E-value=8.1e-09  Score=95.95  Aligned_cols=63  Identities=17%  Similarity=0.138  Sum_probs=46.0

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      +...+...+...+...|...  +.+++|+++..++  +.|.|.+.++. +  ++.+ +.++.||.|+|.++
T Consensus       153 d~~rl~~~l~~~a~~~Ga~i--~~~~~V~~i~~~~--~~~~v~~~~~~-g--~~~~-i~a~~VVnAaG~wa  215 (502)
T PRK13369        153 DDARLVVLNALDAAERGATI--LTRTRCVSARREG--GLWRVETRDAD-G--ETRT-VRARALVNAAGPWV  215 (502)
T ss_pred             cHHHHHHHHHHHHHHCCCEE--ecCcEEEEEEEcC--CEEEEEEEeCC-C--CEEE-EEecEEEECCCccH
Confidence            34556666666677778665  8889999998764  56888776643 2  3357 89999999999755

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.02  E-value=6e-09  Score=71.68  Aligned_cols=79  Identities=16%  Similarity=0.237  Sum_probs=64.3

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLD   88 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   88 (303)
                      +|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                 -..++..++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~---------------------------------~~~~~~~~~~   47 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG---------------------------------FDPDAAKILE   47 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT---------------------------------SSHHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh---------------------------------cCHHHHHHHH
Confidence            5899999999999999999999999999998864211                                 1136778888


Q ss_pred             HHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEee
Q 022090           89 HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN  124 (303)
Q Consensus        89 ~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~  124 (303)
                      +..++.+++.  ++++.+++++.+++ + .+|++++
T Consensus        48 ~~l~~~gV~v--~~~~~v~~i~~~~~-~-~~V~~~~   79 (80)
T PF00070_consen   48 EYLRKRGVEV--HTNTKVKEIEKDGD-G-VEVTLED   79 (80)
T ss_dssp             HHHHHTTEEE--EESEEEEEEEEETT-S-EEEEEET
T ss_pred             HHHHHCCCEE--EeCCEEEEEEEeCC-E-EEEEEec
Confidence            8888888766  99999999998873 3 5577765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.02  E-value=1.1e-08  Score=95.11  Aligned_cols=40  Identities=13%  Similarity=0.319  Sum_probs=35.8

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      ...+||+|||||+.|+++|..|+++|.+|+|+|+++..+|
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~G   43 (508)
T PRK12266          4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASA   43 (508)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            3468999999999999999999999999999999875544

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.01  E-value=2.3e-10  Score=104.09  Aligned_cols=131  Identities=15%  Similarity=0.189  Sum_probs=35.3

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCC---CceEEe------c----CcccccCCCCCCC--CC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSY---DRLRLH------L----AKQFCQLPHLPFP--SS   73 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~---~~~~~~------~----~~~~~~~~~~~~~--~~   73 (303)
                      ||+|||||++|++||..+++.|.+|+|+|+...+||.......   ......      .    ...+......+.+  ..
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~   80 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG   80 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence            7999999999999999999999999999999999997654321   111100      0    0000000000000  00


Q ss_pred             C--CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           74 Y--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        74 ~--~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      +  ....+...+...+.+.+.+.+++.  ++++.|.++..++ ...+.|.+.+..+    ..+ +.++.+|-|||.
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v--~~~t~v~~v~~~~-~~i~~V~~~~~~g----~~~-i~A~~~IDaTG~  148 (428)
T PF12831_consen   81 WVSNVPFDPEVFKAVLDEMLAEAGVEV--LLGTRVVDVIRDG-GRITGVIVETKSG----RKE-IRAKVFIDATGD  148 (428)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc--ccccccccccccc-ccccccccccccc----ccc-cccccccccccc
Confidence            0  012344566667777777778777  9999999998765 3345565554221    167 899999999994

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.00  E-value=2.4e-08  Score=92.79  Aligned_cols=39  Identities=26%  Similarity=0.383  Sum_probs=36.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      ..+||+|||+|.+|+++|..+++.|.+|+|+||.+..||
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG   98 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG   98 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence            357999999999999999999999999999999987776

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.00  E-value=6.6e-09  Score=93.24  Aligned_cols=58  Identities=21%  Similarity=0.192  Sum_probs=43.9

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      +...+...+.+.++..+...  +.+++|+++..++  +.+.|.+.+        .+ +.+|.||+|+|.++
T Consensus       143 ~p~~~~~~l~~~~~~~g~~~--~~~~~V~~i~~~~--~~~~v~~~~--------~~-i~a~~vV~aaG~~~  200 (380)
T TIGR01377       143 YAEKALRALQELAEAHGATV--RDGTKVVEIEPTE--LLVTVKTTK--------GS-YQANKLVVTAGAWT  200 (380)
T ss_pred             cHHHHHHHHHHHHHHcCCEE--ECCCeEEEEEecC--CeEEEEeCC--------CE-EEeCEEEEecCcch
Confidence            45677777877788777665  8889999998754  557776644        36 89999999999754

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.99  E-value=4.7e-09  Score=97.44  Aligned_cols=132  Identities=15%  Similarity=0.186  Sum_probs=77.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC-CCCCccCcCCCCceE----E---ecCc---------ccccCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKKYSYDRLR----L---HLAK---------QFCQLPHL   68 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~-~~gg~w~~~~~~~~~----~---~~~~---------~~~~~~~~   68 (303)
                      ..+||+|||||+||++||..+++.|.+|+++|++. .+|+.-.....-...    .   ....         ...++...
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l   82 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML   82 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence            35899999999999999999999999999999983 555321110000000    0   0000         00001000


Q ss_pred             CC---CCCC--CCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEE
Q 022090           69 PF---PSSY--PMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV  142 (303)
Q Consensus        69 ~~---~~~~--~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI  142 (303)
                      ..   |..+  ....++..+...+.+.+... ++.   .++.+|+++..++ +....|.+.++       .. +.|+.||
T Consensus        83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~---I~q~~V~~Li~e~-grV~GV~t~dG-------~~-I~Ak~VI  150 (618)
T PRK05192         83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLD---LFQGEVEDLIVEN-GRVVGVVTQDG-------LE-FRAKAVV  150 (618)
T ss_pred             ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEecC-CEEEEEEECCC-------CE-EECCEEE
Confidence            00   1000  11345566777777777655 444   3567788876654 22333555543       57 8999999


Q ss_pred             EccCCCC
Q 022090          143 VASGETT  149 (303)
Q Consensus       143 lAtG~~~  149 (303)
                      +|||.+.
T Consensus       151 lATGTFL  157 (618)
T PRK05192        151 LTTGTFL  157 (618)
T ss_pred             EeeCcch
Confidence            9999644

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.98  E-value=1e-08  Score=91.94  Aligned_cols=36  Identities=25%  Similarity=0.299  Sum_probs=33.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~   42 (303)
                      ++||+|||||+.|+++|..|++.|.+|+|+|++...
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~   38 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP   38 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence            479999999999999999999999999999998643

>PLN02661 Putative thiazole synthesis

Probab=98.97  E-value=5.8e-09  Score=90.58  Aligned_cols=138  Identities=17%  Similarity=0.247  Sum_probs=76.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC-CCCeEEEecCCCCCC-ccCcCC-CCceEEecC-cccccCCCCCCCC--CCCCCCCH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYAS-IWKKYS-YDRLRLHLA-KQFCQLPHLPFPS--SYPMFVSR   80 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~-g~~v~iie~~~~~gg-~w~~~~-~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~   80 (303)
                      .+||+|||||++|+++|..|++. |++|+++|++...|| .|.... +....+..+ ..+..--..++..  .+....+.
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha  171 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA  171 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence            57999999999999999999986 899999999887665 664321 111111110 0000000111111  11111123


Q ss_pred             HHHHHHHHHHHH-HcCCCceeEeCeEEEEEEEeCCCCeEEEEE------eecCCCC-ceeEEEEeeCEEEEccCCC
Q 022090           81 AQFIEHLDHYVS-HFNIGPSIRYQRSVESASYDEATNMWNVKA------SNLLSPG-REIEEYYSGRFLVVASGET  148 (303)
Q Consensus        81 ~~l~~~l~~~~~-~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~------~~~~~~~-~~~~~~~~ad~vIlAtG~~  148 (303)
                      .++...+.+.+. +.++..  +.++.++++..++ +...-|.+      .++.+.. .+... +.++.||+|||+.
T Consensus       172 ~e~~stLi~ka~~~~gVkI--~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~~dp~~-I~AkaVVlATGh~  243 (357)
T PLN02661        172 ALFTSTIMSKLLARPNVKL--FNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSCMDPNV-MEAKVVVSSCGHD  243 (357)
T ss_pred             HHHHHHHHHHHHhcCCCEE--EeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCccceeE-EECCEEEEcCCCC
Confidence            444455555443 345544  8888888887654 22222221      2211100 01246 8999999999953

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.97  E-value=1e-09  Score=72.74  Aligned_cols=49  Identities=24%  Similarity=0.411  Sum_probs=41.2

Q ss_pred             EECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCc
Q 022090           12 MVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK   60 (303)
Q Consensus        12 IIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~   60 (303)
                      |||||++||++|..|++.|++|+|+|+++.+||.+....++....+...
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~   49 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGA   49 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeecc
Confidence            8999999999999999999999999999999999887655665554443

...

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.97  E-value=1.3e-08  Score=92.63  Aligned_cols=136  Identities=17%  Similarity=0.218  Sum_probs=79.1

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC-------C--C-------CceE-------------Ee--
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-------S--Y-------DRLR-------------LH--   57 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-------~--~-------~~~~-------------~~--   57 (303)
                      ||+|||+|.+|++||..|+++|.+|+|+||.+..||.-...       .  .       ++..             .+  
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   80 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD   80 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence            89999999999999999999999999999999877632110       0  0       0000             00  


Q ss_pred             --------cC---ccc----ccCCC-----C---CCCC---C------CC-----CCCCHHHHHHHHHHHHHHcCCCcee
Q 022090           58 --------LA---KQF----CQLPH-----L---PFPS---S------YP-----MFVSRAQFIEHLDHYVSHFNIGPSI  100 (303)
Q Consensus        58 --------~~---~~~----~~~~~-----~---~~~~---~------~~-----~~~~~~~l~~~l~~~~~~~~l~~~i  100 (303)
                              .+   ..+    ..|..     +   +...   .      ..     .......+...+.+.+++.++++  
T Consensus        81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i--  158 (417)
T PF00890_consen   81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDI--  158 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEE--
T ss_pred             hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeee--
Confidence                    00   000    00000     0   0000   0      00     11246778888999999988555  


Q ss_pred             EeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090          101 RYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       101 ~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      ++++.++++..++ +...-+...+..++  +... +.++.||+|||.+..
T Consensus       159 ~~~~~~~~Li~e~-g~V~Gv~~~~~~~g--~~~~-i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  159 RFNTRVTDLITED-GRVTGVVAENPADG--EFVR-IKAKAVILATGGFGG  204 (417)
T ss_dssp             EESEEEEEEEEET-TEEEEEEEEETTTC--EEEE-EEESEEEE----BGG
T ss_pred             eccceeeeEEEeC-CceeEEEEEECCCC--eEEE-EeeeEEEeccCcccc
Confidence            9999999999875 23333444422222  4457 899999999997654

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PLN02985 squalene monooxygenase

Probab=98.93  E-value=4.1e-08  Score=91.18  Aligned_cols=137  Identities=20%  Similarity=0.209  Sum_probs=77.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC----C---------------ccCc------CCCCceEEecCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----S---------------IWKK------YSYDRLRLHLAK   60 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g----g---------------~w~~------~~~~~~~~~~~~   60 (303)
                      ..+||+|||||++|+++|..|++.|.+|+|+|+.....    |               .|..      .....+......
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g  121 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDG  121 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECC
Confidence            35799999999999999999999999999999975211    1               1110      011111111111


Q ss_pred             c--cccCCCCC--CCCCC-CCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEE
Q 022090           61 Q--FCQLPHLP--FPSSY-PMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE  134 (303)
Q Consensus        61 ~--~~~~~~~~--~~~~~-~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~  134 (303)
                      .  ...++...  .+... ....++..+.+.+.+.+... ++..  .. .+++++..++ +....|+....++   +..+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i--~~-gtvv~li~~~-~~v~gV~~~~~dG---~~~~  194 (514)
T PLN02985        122 KEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRL--EE-GTVKSLIEEK-GVIKGVTYKNSAG---EETT  194 (514)
T ss_pred             EEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEE--Ee-eeEEEEEEcC-CEEEEEEEEcCCC---CEEE
Confidence            1  01111100  00000 11345678888888887765 3332  43 4566665443 2222344432211   2246


Q ss_pred             EEeeCEEEEccCCCCC
Q 022090          135 YYSGRFLVVASGETTN  150 (303)
Q Consensus       135 ~~~ad~vIlAtG~~~~  150 (303)
                       +.+|.||.|+|.+|.
T Consensus       195 -~~AdLVVgADG~~S~  209 (514)
T PLN02985        195 -ALAPLTVVCDGCYSN  209 (514)
T ss_pred             -EECCEEEECCCCchH
Confidence             789999999998774

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.92  E-value=1.9e-08  Score=92.55  Aligned_cols=62  Identities=15%  Similarity=0.179  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHHHH----cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           79 SRAQFIEHLDHYVSH----FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~----~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      +...+...+.+.+++    .|....++++++|++++... ++.|.|.+.+        .+ +.+++||+|+|.++.
T Consensus       209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~--------G~-i~A~~VVvaAG~~S~  274 (497)
T PTZ00383        209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNR--------GE-IRARFVVVSACGYSL  274 (497)
T ss_pred             CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECC--------CE-EEeCEEEECcChhHH
Confidence            456677777777777    66545569999999998764 3568887765        36 899999999997653

>PRK07121 hypothetical protein; Validated

Probab=98.92  E-value=6.2e-08  Score=89.92  Aligned_cols=38  Identities=24%  Similarity=0.360  Sum_probs=35.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      .+||+|||+|.+|+++|.+++++|.+|+|+||....||
T Consensus        20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG   57 (492)
T PRK07121         20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG   57 (492)
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence            58999999999999999999999999999999887665

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.92  E-value=2.2e-08  Score=90.35  Aligned_cols=58  Identities=17%  Similarity=0.167  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      +...+.+.+.+.+++.|...  +++++|.+++..+  +.|.|.+.+        .+ +.+|.||+|+|.++
T Consensus       147 d~~~l~~aL~~~~~~~Gv~i--~~~~~V~~i~~~~--~~~~V~~~~--------g~-i~ad~vV~A~G~~s  204 (393)
T PRK11728        147 DYRAVAEAMAELIQARGGEI--RLGAEVTALDEHA--NGVVVRTTQ--------GE-YEARTLINCAGLMS  204 (393)
T ss_pred             CHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEecC--CeEEEEECC--------CE-EEeCEEEECCCcch
Confidence            45677778888888777655  8899999987755  457676654        36 89999999999754

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.91  E-value=3.2e-08  Score=92.79  Aligned_cols=38  Identities=24%  Similarity=0.503  Sum_probs=34.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g   43 (303)
                      ..+||+|||||+.|+++|+.|+++|.+|+|+|+++...
T Consensus         5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~   42 (546)
T PRK11101          5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIAT   42 (546)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCC
Confidence            35899999999999999999999999999999976443

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.91  E-value=4.7e-08  Score=89.74  Aligned_cols=39  Identities=23%  Similarity=0.272  Sum_probs=33.8

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCC
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA   43 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~g   43 (303)
                      ...+||+|||||++|+++|..|++.  +.+|+|+||.+.+|
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a   44 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA   44 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence            3567999999999999999999998  89999999944443

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.89  E-value=7.6e-08  Score=87.31  Aligned_cols=63  Identities=16%  Similarity=0.099  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        80 ~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      ...+...+.+.+++.|...  +++++|++++.++  +.|++.+.++...  +..+ +++|.||+|+|.++
T Consensus       196 ~~~~~~~l~~~a~~~G~~i--~~~~~V~~i~~~~--~~~~v~~~~~~~~--~~~~-i~a~~vV~a~G~~s  258 (410)
T PRK12409        196 IHKFTTGLAAACARLGVQF--RYGQEVTSIKTDG--GGVVLTVQPSAEH--PSRT-LEFDGVVVCAGVGS  258 (410)
T ss_pred             HHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEeC--CEEEEEEEcCCCC--ccce-EecCEEEECCCcCh
Confidence            3466666777777778665  8889999998755  5577665543210  0136 89999999999755

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.89  E-value=5.4e-08  Score=91.89  Aligned_cols=131  Identities=18%  Similarity=0.235  Sum_probs=78.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC---CCCccC-------c--------C-----------CCCceEE
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC---YASIWK-------K--------Y-----------SYDRLRL   56 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~---~gg~w~-------~--------~-----------~~~~~~~   56 (303)
                      ++.+|+|||||++|+++|..|++.|++|+|||+.+.   ..|.+.       .        .           .......
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i  159 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI  159 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence            457999999999999999999999999999999751   111110       0        0           0000000


Q ss_pred             e---c---CcccccCCCCCCCC--CCC--CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecC
Q 022090           57 H---L---AKQFCQLPHLPFPS--SYP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL  126 (303)
Q Consensus        57 ~---~---~~~~~~~~~~~~~~--~~~--~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~  126 (303)
                      .   .   ......+.......  ..+  ...++.++.+.|.+.   .+.. .++++++|++++..+  +.++|.+.++ 
T Consensus       160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~a---lg~~-~i~~g~~V~~I~~~~--d~VtV~~~dG-  232 (668)
T PLN02927        160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA---VGED-VIRNESNVVDFEDSG--DKVTVVLENG-  232 (668)
T ss_pred             eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhh---CCCC-EEEcCCEEEEEEEeC--CEEEEEECCC-
Confidence            0   0   00001111110000  011  124577777777443   2322 247888999998765  5677877664 


Q ss_pred             CCCceeEEEEeeCEEEEccCCCCC
Q 022090          127 SPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       127 ~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                            .+ +.+|.||.|.|.+|.
T Consensus       233 ------~t-i~aDlVVGADG~~S~  249 (668)
T PLN02927        233 ------QR-YEGDLLVGADGIWSK  249 (668)
T ss_pred             ------CE-EEcCEEEECCCCCcH
Confidence                  56 899999999998773

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.89  E-value=1e-07  Score=88.10  Aligned_cols=105  Identities=17%  Similarity=0.219  Sum_probs=75.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||||++|+.+|..|++.|.+|+++++.+.+.                      +.         +  ..++.+.
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il----------------------~~---------~--~~~~~~~  226 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL----------------------PT---------E--DAELSKE  226 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC----------------------Cc---------C--CHHHHHH
Confidence            4689999999999999999999999999999886431                      00         0  1256677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+..++.+++.  +++++|++++....++...+...++     +..+ +.+|.||+|+|  ..|+..
T Consensus       227 l~~~l~~~gI~i--~~~~~v~~i~~~~~~~~~~~~~~~g-----~~~~-i~~D~vi~a~G--~~p~~~  284 (472)
T PRK05976        227 VARLLKKLGVRV--VTGAKVLGLTLKKDGGVLIVAEHNG-----EEKT-LEADKVLVSVG--RRPNTE  284 (472)
T ss_pred             HHHHHHhcCCEE--EeCcEEEEEEEecCCCEEEEEEeCC-----ceEE-EEeCEEEEeeC--CccCCC
Confidence            777777778766  8999999997522123233333333     2257 89999999999  666543

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.89  E-value=8.6e-08  Score=88.45  Aligned_cols=137  Identities=15%  Similarity=0.226  Sum_probs=79.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC--CCCccCc--C---CCC---ceE-E-ecCcccc-------c--
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC--YASIWKK--Y---SYD---RLR-L-HLAKQFC-------Q--   64 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~--~gg~w~~--~---~~~---~~~-~-~~~~~~~-------~--   64 (303)
                      ..+||+|||+|++|+++|..|+++|.+|+|+||.+.  .||.-..  .   ...   ... . .....+.       .  
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR   82 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence            357999999999999999999999999999999873  4542110  0   000   000 0 0000000       0  


Q ss_pred             -------------------C--CCCCCCCC----C--C--C---CCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEe
Q 022090           65 -------------------L--PHLPFPSS----Y--P--M---FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYD  112 (303)
Q Consensus        65 -------------------~--~~~~~~~~----~--~--~---~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~  112 (303)
                                         +  ...++...    .  .  .   ......+...+.+.+++.+++.  +++++|+++..+
T Consensus        83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i--~~~t~v~~l~~~  160 (466)
T PRK08274         83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEI--RYDAPVTALELD  160 (466)
T ss_pred             CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEE--EcCCEEEEEEec
Confidence                               0  00000000    0  0  0   0013567778888888888665  999999999875


Q ss_pred             CCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090          113 EATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus       113 ~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      + +....|...+...   +... +.++.||+|||.+.
T Consensus       161 ~-g~v~gv~~~~~~g---~~~~-i~a~~VIlAtGg~~  192 (466)
T PRK08274        161 D-GRFVGARAGSAAG---GAER-IRAKAVVLAAGGFE  192 (466)
T ss_pred             C-CeEEEEEEEccCC---ceEE-EECCEEEECCCCCC
Confidence            3 2333344432111   2256 89999999999654

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.88  E-value=2.3e-08  Score=89.24  Aligned_cols=122  Identities=15%  Similarity=0.146  Sum_probs=71.7

Q ss_pred             cEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCC--ccCcCCCCce--E---------EecCcccccCCCCCCCCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS--IWKKYSYDRL--R---------LHLAKQFCQLPHLPFPSS   73 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg--~w~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~   73 (303)
                      ||+|||||+||+++|..|++.  |++|+++|+.+..++  +|..-...--  .         ..-+.....++.......
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            799999999999999999987  999999999987776  4432100000  0         000000000000000000


Q ss_pred             C-CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           74 Y-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        74 ~-~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      . .....+.++.+++.+.+   +..  ++++++|++++  .  +.+  ++.++       .+ ++++.||.|+|..+
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l---~~~--i~~~~~V~~v~--~--~~v--~l~dg-------~~-~~A~~VI~A~G~~s  138 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAF---PEG--VILGRKAVGLD--A--DGV--DLAPG-------TR-INARSVIDCRGFKP  138 (370)
T ss_pred             CCceEEEHHHHHHHHHHhh---ccc--EEecCEEEEEe--C--CEE--EECCC-------CE-EEeeEEEECCCCCC
Confidence            0 11234667777765433   222  47788998883  2  233  34443       57 89999999999654

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=98.88  E-value=3.2e-09  Score=86.58  Aligned_cols=160  Identities=16%  Similarity=0.250  Sum_probs=94.3

Q ss_pred             cEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            9 EVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|||||+||.+||..|+.+  ..+++++..++.+-..-+                                -..+.+|
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn--------------------------------~~~i~~y   48 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTN--------------------------------YQKIGQY   48 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhh--------------------------------HHHHHHH
Confidence            368999999999999999987  458888877654321111                                1123333


Q ss_pred             HHHHH------HHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcc
Q 022090           87 LDHYV------SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLC  160 (303)
Q Consensus        87 l~~~~------~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~  160 (303)
                      +.++-      ..++-    .|..-+.++..- +.....+.+.++       .. +.|++|++|||  .+|..- .+|.+
T Consensus        49 lekfdv~eq~~~elg~----~f~~~~~~v~~~-~s~ehci~t~~g-------~~-~ky~kKOG~tg--~kPklq-~E~~n  112 (334)
T KOG2755|consen   49 LEKFDVKEQNCHELGP----DFRRFLNDVVTW-DSSEHCIHTQNG-------EK-LKYFKLCLCTG--YKPKLQ-VEGIN  112 (334)
T ss_pred             HHhcCccccchhhhcc----cHHHHHHhhhhh-ccccceEEecCC-------ce-eeEEEEEEecC--CCccee-ecCCC
Confidence            32210      00111    111111111111 113355666665       56 89999999999  666432 22222


Q ss_pred             ccccCCCCCccEEecccCCCC-----CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH
Q 022090          161 SFCSSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       161 ~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~  228 (303)
                      .         .++...+..+.     ...+.|+|+|+|.|-+++|++.++...  +|+|....+ +|-..+.+
T Consensus       113 ~---------~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~~--nv~w~ikd~-~IsaTFfd  173 (334)
T KOG2755|consen  113 P---------KIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKIL--NVTWKIKDE-GISATFFD  173 (334)
T ss_pred             c---------eEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhcc--eeEEEecch-hhhhcccC
Confidence            1         23433333332     233579999999999999999999754  899988777 66554433

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.88  E-value=1.1e-07  Score=87.68  Aligned_cols=103  Identities=16%  Similarity=0.212  Sum_probs=77.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|++|+.+|..|.+.|.+|+++|+.+.+.                      +.           ...++.+.
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l----------------------~~-----------~~~~~~~~  216 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL----------------------PG-----------EDAEVSKV  216 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC----------------------CC-----------CCHHHHHH
Confidence            4689999999999999999999999999999987431                      00           01256667


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+.+++.+++.  +++++|++++.++  +...+...++     +..+ +.+|.||+|+|  ..|+..
T Consensus       217 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~-i~~D~vi~a~G--~~p~~~  272 (461)
T TIGR01350       217 VAKALKKKGVKI--LTNTKVTAVEKND--DQVVYENKGG-----ETET-LTGEKVLVAVG--RKPNTE  272 (461)
T ss_pred             HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEeCC-----cEEE-EEeCEEEEecC--CcccCC
Confidence            777777777665  9999999998754  4455555433     2246 89999999999  656544

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.88  E-value=1.2e-08  Score=89.89  Aligned_cols=125  Identities=15%  Similarity=0.157  Sum_probs=73.4

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEE-ecCCCCCCccCcCCCCceEEecC-------------------cccccCCCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVIL-ERENCYASIWKKYSYDRLRLHLA-------------------KQFCQLPHL   68 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~ii-e~~~~~gg~w~~~~~~~~~~~~~-------------------~~~~~~~~~   68 (303)
                      ||+|||||+||+.||..+++.|.+|+++ .+.+.++..-   |.+++.-...                   ....++...
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~---Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l   77 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS---CNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML   77 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S---SSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc---chhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence            7999999999999999999999999999 4444444321   1122111000                   000000000


Q ss_pred             ---CCCCCCC--CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEE
Q 022090           69 ---PFPSSYP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV  143 (303)
Q Consensus        69 ---~~~~~~~--~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIl  143 (303)
                         .-|..+.  ...++..+..++++.++....-.  ..+.+|+++..++ ...+-|.+.++       .. +.++.||+
T Consensus        78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~--i~~~~V~~l~~e~-~~v~GV~~~~g-------~~-~~a~~vVl  146 (392)
T PF01134_consen   78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLT--IIQGEVTDLIVEN-GKVKGVVTKDG-------EE-IEADAVVL  146 (392)
T ss_dssp             STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEE--EEES-EEEEEECT-TEEEEEEETTS-------EE-EEECEEEE
T ss_pred             cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeE--EEEcccceEEecC-CeEEEEEeCCC-------CE-EecCEEEE
Confidence               0011111  24578899999999888743222  4578899998766 34455666654       67 89999999


Q ss_pred             ccCC
Q 022090          144 ASGE  147 (303)
Q Consensus       144 AtG~  147 (303)
                      |||.
T Consensus       147 aTGt  150 (392)
T PF01134_consen  147 ATGT  150 (392)
T ss_dssp             -TTT
T ss_pred             eccc
Confidence            9995

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK08275 putative oxidoreductase; Provisional

Probab=98.86  E-value=1.2e-07  Score=89.25  Aligned_cols=145  Identities=12%  Similarity=0.131  Sum_probs=81.8

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCC-CCccCcC--CCCc-eE--EecCcccc---------
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY-ASIWKKY--SYDR-LR--LHLAKQFC---------   63 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~-gg~w~~~--~~~~-~~--~~~~~~~~---------   63 (303)
                      |......+||+|||+|.||++||..+++.  |.+|+|+||.+.. +|.+...  .... +.  ...+..+.         
T Consensus         3 ~~~~~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~   82 (554)
T PRK08275          3 MNTQEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDG   82 (554)
T ss_pred             CCceeEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCC
Confidence            43334458999999999999999999987  6899999998753 2221100  0000 00  00000000         


Q ss_pred             -------------------cC--CCCCCCC---C---------CC----CCCCHHHHHHHHHHHHHHcCCCceeEeCeEE
Q 022090           64 -------------------QL--PHLPFPS---S---------YP----MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSV  106 (303)
Q Consensus        64 -------------------~~--~~~~~~~---~---------~~----~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V  106 (303)
                                         .+  -..++..   .         ..    .......+...|.+.+++.++++  ++++.+
T Consensus        83 ~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i--~~~~~v  160 (554)
T PRK08275         83 IVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLI--TNRIMA  160 (554)
T ss_pred             CccHHHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEE--EcceEE
Confidence                               00  0000000   0         00    01135577888888888777665  999999


Q ss_pred             EEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090          107 ESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       107 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      +++..++++...-+...+..++  +... +.++.||+|||..+.
T Consensus       161 ~~Li~~~~g~v~Gv~~~~~~~g--~~~~-i~Ak~VIlATGG~~~  201 (554)
T PRK08275        161 TRLLTDADGRVAGALGFDCRTG--EFLV-IRAKAVILCCGAAGR  201 (554)
T ss_pred             EEEEEcCCCeEEEEEEEecCCC--cEEE-EECCEEEECCCCccc
Confidence            9997753222222332221111  3346 889999999997553

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.85  E-value=2.8e-08  Score=91.44  Aligned_cols=58  Identities=7%  Similarity=0.039  Sum_probs=43.1

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      +...+...+.+.+++.|+.+  +.++.|++++..   +.+.|.+.+        .+ +.+|.||+|+|.++.
T Consensus       181 ~P~~l~~~L~~~a~~~Gv~i--~~~t~V~~i~~~---~~~~v~t~~--------g~-v~A~~VV~Atga~s~  238 (460)
T TIGR03329       181 QPGLLVRGLRRVALELGVEI--HENTPMTGLEEG---QPAVVRTPD--------GQ-VTADKVVLALNAWMA  238 (460)
T ss_pred             CHHHHHHHHHHHHHHcCCEE--ECCCeEEEEeeC---CceEEEeCC--------cE-EECCEEEEccccccc
Confidence            45667777777777788665  889999998742   346676654        36 899999999997654

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.85  E-value=1.1e-08  Score=91.35  Aligned_cols=62  Identities=15%  Similarity=0.208  Sum_probs=46.2

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      +..++...+.+.+.+.|...  +++++|+.+++..+ +.+.+.+.+++      .+ ++|+.||.|.|..+.
T Consensus       151 ~~~~~t~~l~e~a~~~g~~i--~ln~eV~~i~~~~d-g~~~~~~~~g~------~~-~~ak~Vin~AGl~Ad  212 (429)
T COG0579         151 DPGELTRALAEEAQANGVEL--RLNTEVTGIEKQSD-GVFVLNTSNGE------ET-LEAKFVINAAGLYAD  212 (429)
T ss_pred             cHHHHHHHHHHHHHHcCCEE--EecCeeeEEEEeCC-ceEEEEecCCc------EE-EEeeEEEECCchhHH
Confidence            34566777777777777666  99999999999872 25666666542      45 799999999997664

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.84  E-value=1.3e-07  Score=89.40  Aligned_cols=44  Identities=23%  Similarity=0.313  Sum_probs=37.7

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      |+-....+||+|||+|.|||+||..+++.|.+|+|+||....+|
T Consensus         1 ~~~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g   44 (588)
T PRK08958          1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS   44 (588)
T ss_pred             CCCCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence            55445568999999999999999999999999999999865443

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.84  E-value=3.8e-08  Score=94.51  Aligned_cols=60  Identities=13%  Similarity=0.239  Sum_probs=43.5

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        78 ~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      .+...+...+.+.+.. ++..  +++++|+++...+  +.|.|.+.++       .. +.+|.||+|+|..+.
T Consensus       405 v~p~~l~~aL~~~a~~-Gv~i--~~~~~V~~i~~~~--~~~~v~t~~g-------~~-~~ad~VV~A~G~~s~  464 (662)
T PRK01747        405 LCPAELCRALLALAGQ-QLTI--HFGHEVARLERED--DGWQLDFAGG-------TL-ASAPVVVLANGHDAA  464 (662)
T ss_pred             eCHHHHHHHHHHhccc-CcEE--EeCCEeeEEEEeC--CEEEEEECCC-------cE-EECCEEEECCCCCcc
Confidence            3445677777776666 6554  8899999998765  5688776543       45 689999999997553

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.84  E-value=9.1e-08  Score=86.72  Aligned_cols=36  Identities=39%  Similarity=0.523  Sum_probs=32.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhC-CC-CeEEEecCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~-~v~iie~~~~   41 (303)
                      ..+||+|||||++|+++|++|++. |. +|+|+|+...
T Consensus        29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~   66 (407)
T TIGR01373        29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL   66 (407)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence            467999999999999999999995 85 9999999763

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.83  E-value=5e-08  Score=82.58  Aligned_cols=144  Identities=20%  Similarity=0.290  Sum_probs=94.2

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC--CC---------------------------ccCcCC-
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY--AS---------------------------IWKKYS-   50 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~--gg---------------------------~w~~~~-   50 (303)
                      |+++....+|+|||||.-|+++|.+|+++|.++.++|+-+..  -|                           .|+... 
T Consensus         1 ~~~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~   80 (399)
T KOG2820|consen    1 SSEMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPE   80 (399)
T ss_pred             CcccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChh
Confidence            445556679999999999999999999999999999986521  11                           122110 


Q ss_pred             -------CCceEEe--c------------------------Cc-ccccCC-CCCCCCCCC-------CCCCHHHHHHHHH
Q 022090           51 -------YDRLRLH--L------------------------AK-QFCQLP-HLPFPSSYP-------MFVSRAQFIEHLD   88 (303)
Q Consensus        51 -------~~~~~~~--~------------------------~~-~~~~~~-~~~~~~~~~-------~~~~~~~l~~~l~   88 (303)
                             .....+.  .                        +. ---.|| ..++|+++.       .+....+-+..++
T Consensus        81 ~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~  160 (399)
T KOG2820|consen   81 ESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQ  160 (399)
T ss_pred             hhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHH
Confidence                   0000000  0                        00 001234 445555543       3445678888889


Q ss_pred             HHHHHcCCCceeEeCeEEEEEEEeCCC-CeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           89 HYVSHFNIGPSIRYQRSVESASYDEAT-NMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        89 ~~~~~~~l~~~i~~~~~V~~i~~~~~~-~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      ..+++.|..+  +.+..|..+...+.. ....|.+.++       .. +.++.+|+++|++-....|
T Consensus       161 ~~~~~~G~i~--~dg~~v~~~~~~~e~~~~v~V~Tt~g-------s~-Y~akkiI~t~GaWi~klL~  217 (399)
T KOG2820|consen  161 DKARELGVIF--RDGEKVKFIKFVDEEGNHVSVQTTDG-------SI-YHAKKIIFTVGAWINKLLP  217 (399)
T ss_pred             HHHHHcCeEE--ecCcceeeEeeccCCCceeEEEeccC-------Ce-eecceEEEEecHHHHhhcC
Confidence            9999988766  899999988865433 3455666654       56 8999999999975544444

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.83  E-value=4.7e-08  Score=87.28  Aligned_cols=34  Identities=32%  Similarity=0.534  Sum_probs=32.0

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      +||+|||||++|+++|..|++.|.+|+|+|+...
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5899999999999999999999999999999764

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.82  E-value=9.6e-08  Score=88.75  Aligned_cols=132  Identities=12%  Similarity=0.130  Sum_probs=78.2

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC-CCCccCcCC---------CCceEEecC-------cccccCCCCC-
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC-YASIWKKYS---------YDRLRLHLA-------KQFCQLPHLP-   69 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~-~gg~w~~~~---------~~~~~~~~~-------~~~~~~~~~~-   69 (303)
                      +||+|||||++|+.+|..+++.|.+|+++|++.. +|.+.....         ...+.....       ....++.... 
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~   80 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS   80 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence            6999999999999999999999999999998743 222111000         001000000       0000011110 


Q ss_pred             --CCCCC--CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEcc
Q 022090           70 --FPSSY--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVAS  145 (303)
Q Consensus        70 --~~~~~--~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAt  145 (303)
                        -|..+  ....++..+..++++.++..+...  .++..|+.+..++++..+.|.+.++       .. +.|+.||+||
T Consensus        81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~--Ile~~Vv~li~e~~g~V~GV~t~~G-------~~-I~Ad~VILAT  150 (617)
T TIGR00136        81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLS--LFQGEVEDLILEDNDEIKGVVTQDG-------LK-FRAKAVIITT  150 (617)
T ss_pred             CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcE--EEEeEEEEEEEecCCcEEEEEECCC-------CE-EECCEEEEcc
Confidence              01111  124467788888888888773222  4556777776543234556666554       46 8999999999


Q ss_pred             CCCC
Q 022090          146 GETT  149 (303)
Q Consensus       146 G~~~  149 (303)
                      |.+.
T Consensus       151 GtfL  154 (617)
T TIGR00136       151 GTFL  154 (617)
T ss_pred             Cccc
Confidence            9654

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.82  E-value=8.7e-08  Score=91.06  Aligned_cols=39  Identities=23%  Similarity=0.423  Sum_probs=35.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      ..+||+|||||+.|+++|+.|+++|++|+|+|+++..+|
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G  108 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG  108 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence            458999999999999999999999999999999875444

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.82  E-value=8e-08  Score=88.56  Aligned_cols=65  Identities=17%  Similarity=0.279  Sum_probs=46.1

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      +...+...+.+.+++.|...  +++++|++++.++ ++.|.+.+.+..++  +..+ +.+++||+|+|.++
T Consensus       176 dp~~l~~aL~~~a~~~Gv~i--~~~t~V~~i~~~~-~~~v~v~~~~~~~g--~~~~-i~A~~VV~AAG~~s  240 (483)
T TIGR01320       176 DFGALTKQLLGYLVQNGTTI--RFGHEVRNLKRQS-DGSWTVTVKNTRTG--GKRT-LNTRFVFVGAGGGA  240 (483)
T ss_pred             CHHHHHHHHHHHHHhCCCEE--EeCCEEEEEEEcC-CCeEEEEEeeccCC--ceEE-EECCEEEECCCcch
Confidence            45677777777777777655  9999999998754 24587765432221  1246 89999999999755

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.82  E-value=9e-08  Score=89.82  Aligned_cols=143  Identities=15%  Similarity=0.117  Sum_probs=82.3

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC-CCCccCc--CCC-------Cce-------------EEe
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC-YASIWKK--YSY-------DRL-------------RLH   57 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~-~gg~w~~--~~~-------~~~-------------~~~   57 (303)
                      |+.....+||+|||+|.||++||..+ +.|.+|+|+||... .||+-..  ..+       +..             ..+
T Consensus         1 ~~~~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d   79 (543)
T PRK06263          1 MEDEIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLND   79 (543)
T ss_pred             CCcceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCC
Confidence            55555568999999999999999999 89999999999764 4442111  000       000             000


Q ss_pred             ----------cC---cccccCCCCCCCC-----------C---CCC-----CCCHHHHHHHHHHHHHHcCCCceeEeCeE
Q 022090           58 ----------LA---KQFCQLPHLPFPS-----------S---YPM-----FVSRAQFIEHLDHYVSHFNIGPSIRYQRS  105 (303)
Q Consensus        58 ----------~~---~~~~~~~~~~~~~-----------~---~~~-----~~~~~~l~~~l~~~~~~~~l~~~i~~~~~  105 (303)
                                .+   .++.. -..++..           .   ++.     -.....+...|.+.+++.+++.  ++++.
T Consensus        80 ~~lv~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i--~~~t~  156 (543)
T PRK06263         80 PKLVEILVKEAPKRLKDLEK-FGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKI--LEEVM  156 (543)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEE--EeCeE
Confidence                      00   00000 0011110           0   000     0134677788888777777655  99999


Q ss_pred             EEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090          106 VESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       106 V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      ++++..++.....-+...+...+  +... +.++.||+|||.+..
T Consensus       157 v~~Li~~~~~~v~Gv~~~~~~~g--~~~~-i~AkaVIlATGG~~~  198 (543)
T PRK06263        157 AIKLIVDENREVIGAIFLDLRNG--EIFP-IYAKATILATGGAGQ  198 (543)
T ss_pred             eeeeEEeCCcEEEEEEEEECCCC--cEEE-EEcCcEEECCCCCCC
Confidence            99987754211222333221111  2256 899999999997653

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.82  E-value=1e-07  Score=86.45  Aligned_cols=105  Identities=16%  Similarity=0.177  Sum_probs=81.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .+.+++|||||+.|+..|..+++.|.+|+|+|+.+.+-                      +.+           .+++.+
T Consensus       172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL----------------------p~~-----------D~ei~~  218 (454)
T COG1249         172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL----------------------PGE-----------DPEISK  218 (454)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC----------------------CcC-----------CHHHHH
Confidence            46789999999999999999999999999999988641                      111           137888


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD  155 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~  155 (303)
                      .+.+..++.++..  ++++.++.++..+  +...+.+.++..     .+ +++|.|++|+|  ..|+...
T Consensus       219 ~~~~~l~~~gv~i--~~~~~v~~~~~~~--~~v~v~~~~g~~-----~~-~~ad~vLvAiG--R~Pn~~~  276 (454)
T COG1249         219 ELTKQLEKGGVKI--LLNTKVTAVEKKD--DGVLVTLEDGEG-----GT-IEADAVLVAIG--RKPNTDG  276 (454)
T ss_pred             HHHHHHHhCCeEE--EccceEEEEEecC--CeEEEEEecCCC-----CE-EEeeEEEEccC--CccCCCC
Confidence            8888888766555  8999999998766  336666666532     26 88999999999  6666554

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.82  E-value=1.3e-07  Score=86.34  Aligned_cols=137  Identities=20%  Similarity=0.272  Sum_probs=86.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC------------------------------------
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY------------------------------------   49 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~------------------------------------   49 (303)
                      ..+||+|||||+.|+.+|..++.+|++|+++|+++...|+-...                                    
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~   90 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL   90 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence            56899999999999999999999999999999999766643221                                    


Q ss_pred             --CCCceEEecC----ccc--------ccCCCC----C-------------CCC----C------CC-CCCCHHHHHHHH
Q 022090           50 --SYDRLRLHLA----KQF--------CQLPHL----P-------------FPS----S------YP-MFVSRAQFIEHL   87 (303)
Q Consensus        50 --~~~~~~~~~~----~~~--------~~~~~~----~-------------~~~----~------~~-~~~~~~~l~~~l   87 (303)
                        ..+.+....+    ..+        +.+...    |             .|.    .      ++ ...+...+....
T Consensus        91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~  170 (532)
T COG0578          91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAAN  170 (532)
T ss_pred             cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHH
Confidence              0000000000    000        000000    0             000    0      00 011223444444


Q ss_pred             HHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        88 ~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      ...+...|-..  ...++|+++..+.  +.|-|...+..++  +..+ ++++.||.|||.++
T Consensus       171 a~~A~~~Ga~i--l~~~~v~~~~re~--~v~gV~~~D~~tg--~~~~-ira~~VVNAaGpW~  225 (532)
T COG0578         171 ARDAAEHGAEI--LTYTRVESLRREG--GVWGVEVEDRETG--ETYE-IRARAVVNAAGPWV  225 (532)
T ss_pred             HHHHHhcccch--hhcceeeeeeecC--CEEEEEEEecCCC--cEEE-EEcCEEEECCCccH
Confidence            55566667665  7889999999887  4888998886655  5567 89999999999744

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.81  E-value=1.1e-07  Score=85.22  Aligned_cols=97  Identities=11%  Similarity=0.167  Sum_probs=74.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..                               ... ...+...
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------------------------~~~-~~~~~~~  188 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------------------------SLM-PPEVSSR  188 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------------------------hhC-CHHHHHH
Confidence            46899999999999999999999999999998764310                               000 1245566


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      +.+.+++.++..  +++++|+++..++  +.+.+.+.++       .+ +.+|.||+|+|.
T Consensus       189 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~vI~a~G~  237 (377)
T PRK04965        189 LQHRLTEMGVHL--LLKSQLQGLEKTD--SGIRATLDSG-------RS-IEVDAVIAAAGL  237 (377)
T ss_pred             HHHHHHhCCCEE--EECCeEEEEEccC--CEEEEEEcCC-------cE-EECCEEEECcCC
Confidence            777777778665  8899999997654  4577777654       57 899999999993

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.80  E-value=2.6e-07  Score=87.38  Aligned_cols=38  Identities=24%  Similarity=0.368  Sum_probs=34.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g   43 (303)
                      ..+||+|||+|.|||+||..+++.|.+|+|+||....+
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~   48 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTR   48 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence            35799999999999999999999999999999975433

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.80  E-value=2.5e-07  Score=87.64  Aligned_cols=39  Identities=21%  Similarity=0.279  Sum_probs=34.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      ..+||+|||+|.||++||..+++.|.+|+|+||....++
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g   49 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS   49 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc
Confidence            357999999999999999999999999999999864443

>TIGR02053 MerA mercuric reductase

Probab=98.80  E-value=3.9e-07  Score=84.00  Aligned_cols=104  Identities=17%  Similarity=0.185  Sum_probs=76.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                      +.+           ..++...
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l----------------------~~~-----------d~~~~~~  212 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL----------------------PRE-----------EPEISAA  212 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC----------------------Ccc-----------CHHHHHH
Confidence            4689999999999999999999999999999876431                      000           1255667


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+..+..+++.  +++++|++++.++  +.+.+.+...++    ..+ +.+|.||+|+|  ..|+..
T Consensus       213 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~~~v~~~~~~~----~~~-i~~D~ViiA~G--~~p~~~  269 (463)
T TIGR02053       213 VEEALAEEGIEV--VTSAQVKAVSVRG--GGKIITVEKPGG----QGE-VEADELLVATG--RRPNTD  269 (463)
T ss_pred             HHHHHHHcCCEE--EcCcEEEEEEEcC--CEEEEEEEeCCC----ceE-EEeCEEEEeEC--CCcCCC
Confidence            777777777665  8999999997654  345555543211    157 89999999999  666554

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.79  E-value=2.9e-07  Score=87.43  Aligned_cols=39  Identities=23%  Similarity=0.211  Sum_probs=35.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      ..+||+|||+|.||++||..+++.|.+|+|+||....++
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g   66 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS   66 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence            357999999999999999999999999999999876554

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.78  E-value=3.2e-07  Score=84.44  Aligned_cols=102  Identities=16%  Similarity=0.163  Sum_probs=75.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                      +.           ...++.+.
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll----------------------~~-----------~d~e~~~~  216 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL----------------------PG-----------EDEDIAHI  216 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC----------------------cc-----------ccHHHHHH
Confidence            4689999999999999999999999999999876431                      00           01356677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+.+++.+++.  +++++|++++.++  ..+.+.. ++     +..+ +.+|.||+|+|  ..|+..
T Consensus       217 l~~~L~~~GI~i--~~~~~V~~i~~~~--~~v~~~~-~g-----~~~~-i~~D~vivA~G--~~p~~~  271 (458)
T PRK06912        217 LREKLENDGVKI--FTGAALKGLNSYK--KQALFEY-EG-----SIQE-VNAEFVLVSVG--RKPRVQ  271 (458)
T ss_pred             HHHHHHHCCCEE--EECCEEEEEEEcC--CEEEEEE-CC-----ceEE-EEeCEEEEecC--CccCCC
Confidence            777777778666  8999999997654  3333332 21     2247 89999999999  666543

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.78  E-value=2.8e-07  Score=87.63  Aligned_cols=39  Identities=26%  Similarity=0.275  Sum_probs=35.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      ..+||+|||+|.||++||..+++.|.+|+|+||....++
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g   87 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS   87 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence            357999999999999999999999999999999875554

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.78  E-value=3.6e-07  Score=84.24  Aligned_cols=104  Identities=14%  Similarity=0.170  Sum_probs=78.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                      +.           ...++.+.
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l----------------------~~-----------~~~~~~~~  218 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL----------------------PG-----------EDKEISKL  218 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC----------------------Cc-----------CCHHHHHH
Confidence            4689999999999999999999999999999976531                      00           01256677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+.+++.++..  +++++|++++.++  +.+.+...+++    +..+ +.+|.||+|+|  ..|+..
T Consensus       219 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~gg----~~~~-i~~D~vi~a~G--~~p~~~  275 (462)
T PRK06416        219 AERALKKRGIKI--KTGAKAKKVEQTD--DGVTVTLEDGG----KEET-LEADYVLVAVG--RRPNTE  275 (462)
T ss_pred             HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEEeCC----eeEE-EEeCEEEEeeC--CccCCC
Confidence            777777778665  9999999998765  35666655431    2257 89999999999  556543

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.77  E-value=1.8e-07  Score=87.72  Aligned_cols=139  Identities=14%  Similarity=0.072  Sum_probs=81.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc--CCC-------Cce-------------EEe------
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--YSY-------DRL-------------RLH------   57 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~--~~~-------~~~-------------~~~------   57 (303)
                      ..+||+|||+|.||++||..+++.|.+|+|+||....+|.-..  ..+       ++.             ..+      
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~   94 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS   94 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            3589999999999999999999999999999998866542110  000       000             000      


Q ss_pred             ----cC---cccccCCCCCCCCC--------------CC------CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEE
Q 022090           58 ----LA---KQFCQLPHLPFPSS--------------YP------MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS  110 (303)
Q Consensus        58 ----~~---~~~~~~~~~~~~~~--------------~~------~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~  110 (303)
                          .+   .++.. -..++...              .+      .-.....+...|.+.+++.++..  +.++.|+++.
T Consensus        95 ~~~~s~~~i~~L~~-~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i--~~~~~v~~Li  171 (541)
T PRK07804         95 LVAEGPRAVRELVA-LGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDI--REHALALDLL  171 (541)
T ss_pred             HHHHHHHHHHHHHH-cCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEE--EECeEeeeeE
Confidence                00   00000 00111100              00      01135678888888888877554  8899999997


Q ss_pred             EeCCCCeEEEEEee---cCCCCceeEEEEeeCEEEEccCCCCC
Q 022090          111 YDEATNMWNVKASN---LLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       111 ~~~~~~~~~v~~~~---~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      .++++...-+...+   +..+  .... +.++.||+|||.++.
T Consensus       172 ~~~~g~v~Gv~~~~~~~~~~~--g~~~-i~Ak~VIlATGG~~~  211 (541)
T PRK07804        172 TDGTGAVAGVTLHVLGEGSPD--GVGA-VHAPAVVLATGGLGQ  211 (541)
T ss_pred             EcCCCeEEEEEEEeccCCCCC--cEEE-EEcCeEEECCCCCCC
Confidence            65422222333321   0111  1246 899999999997664

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.77  E-value=3.1e-07  Score=86.88  Aligned_cols=38  Identities=21%  Similarity=0.221  Sum_probs=34.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      +.||+|||+|.||++||..+++.|.+|+|+||....+|
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g   40 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS   40 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence            46999999999999999999999999999999876543

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.77  E-value=4.1e-08  Score=87.10  Aligned_cols=64  Identities=19%  Similarity=0.361  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           81 AQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        81 ~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      ..+.+.+.+++... +..  ++++++|++|++.. ++.|.|.+.+..++  +..+ +.+++|++..|..+.
T Consensus       181 G~LTr~l~~~l~~~~~~~--~~~~~eV~~i~r~~-dg~W~v~~~~~~~~--~~~~-v~a~FVfvGAGG~aL  245 (488)
T PF06039_consen  181 GALTRQLVEYLQKQKGFE--LHLNHEVTDIKRNG-DGRWEVKVKDLKTG--EKRE-VRAKFVFVGAGGGAL  245 (488)
T ss_pred             HHHHHHHHHHHHhCCCcE--EEecCEeCeeEECC-CCCEEEEEEecCCC--CeEE-EECCEEEECCchHhH
Confidence            34445555555444 544  49999999999876 56799998765443  4467 899999999997653

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.74  E-value=3.7e-07  Score=87.05  Aligned_cols=37  Identities=24%  Similarity=0.323  Sum_probs=33.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g   43 (303)
                      .+||+|||+|.|||+||..+++.|.+|+|+|+...++
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~   71 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR   71 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            4799999999999999999999999999999865543

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.74  E-value=3e-07  Score=86.57  Aligned_cols=39  Identities=15%  Similarity=0.285  Sum_probs=34.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      ..+||+|||+|.||++||..+++.|.+|+|+||....++
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g   42 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS   42 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence            357999999999999999999999999999999865444

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.74  E-value=2e-07  Score=85.37  Aligned_cols=100  Identities=18%  Similarity=0.178  Sum_probs=74.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                      +.         +  ..++.+.
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l----------------------~~---------~--~~~~~~~  203 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL----------------------PR---------E--EPSVAAL  203 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC----------------------CC---------C--CHHHHHH
Confidence            4689999999999999999999999999999976531                      00         0  1255666


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+..+..++..  +++++|++++.++  +...+.. ++       .+ +.+|.||+|+|  ..|+..
T Consensus       204 ~~~~l~~~GI~i--~~~~~V~~i~~~~--~~v~v~~-~g-------~~-i~~D~viva~G--~~p~~~  256 (438)
T PRK07251        204 AKQYMEEDGITF--LLNAHTTEVKNDG--DQVLVVT-ED-------ET-YRFDALLYATG--RKPNTE  256 (438)
T ss_pred             HHHHHHHcCCEE--EcCCEEEEEEecC--CEEEEEE-CC-------eE-EEcCEEEEeeC--CCCCcc
Confidence            777777778765  8899999997643  3444443 22       56 89999999999  655543

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.74  E-value=5.5e-07  Score=85.46  Aligned_cols=35  Identities=20%  Similarity=0.414  Sum_probs=32.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~   41 (303)
                      .+||+|||+|.||++||..+++.  |.+|+|+||...
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~   47 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI   47 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence            57999999999999999999998  999999999864

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.74  E-value=1.5e-07  Score=86.71  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=32.6

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~   42 (303)
                      +||+|||+|.||++||..+++.|.+|+|+||....
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~   36 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK   36 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            69999999999999999999999999999997643

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.73  E-value=6.9e-08  Score=83.88  Aligned_cols=142  Identities=17%  Similarity=0.244  Sum_probs=85.7

Q ss_pred             CCCCCcEEEECCcHHHHHHHHHHhhC------CCCeEEEecCCCCCCccCcC-C---------CC---------------
Q 022090            4 QAAGVEVIMVGAGTSGLATAACLSLQ------SIPYVILERENCYASIWKKY-S---------YD---------------   52 (303)
Q Consensus         4 ~~~~~~vvIIGaG~aGl~~A~~l~~~------g~~v~iie~~~~~gg~w~~~-~---------~~---------------   52 (303)
                      ....+||+|||||||||++|.+|.+.      .++|+++|+...+||..-.. +         .+               
T Consensus        73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~  152 (621)
T KOG2415|consen   73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTS  152 (621)
T ss_pred             hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccc
Confidence            34568999999999999999999764      56899999999998732110 0         11               


Q ss_pred             -ceEEecCcccccCCCC-CCCCCCCCC-CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCC--
Q 022090           53 -RLRLHLAKQFCQLPHL-PFPSSYPMF-VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS--  127 (303)
Q Consensus        53 -~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~--  127 (303)
                       .+...........|.. |+... ..| .+-.++..||-+.++.+|+++  .-+..+..+-.++++...-+.+.+-+-  
T Consensus       153 d~~~fLt~~~~i~vPv~~pm~Nh-GNYvv~L~~~v~wLg~kAEe~GvEi--yPg~aaSevly~edgsVkGiaT~D~GI~k  229 (621)
T KOG2415|consen  153 DKFKFLTGKGRISVPVPSPMDNH-GNYVVSLGQLVRWLGEKAEELGVEI--YPGFAASEVLYDEDGSVKGIATNDVGISK  229 (621)
T ss_pred             cceeeeccCceeecCCCcccccC-CcEEEEHHHHHHHHHHHHHhhCcee--ccccchhheeEcCCCcEeeEeeccccccC
Confidence             1111111111111111 11111 122 356899999999999999876  666666666666655544454443110  


Q ss_pred             -CC-c----eeEEEEeeCEEEEccCCCC
Q 022090          128 -PG-R----EIEEYYSGRFLVVASGETT  149 (303)
Q Consensus       128 -~~-~----~~~~~~~ad~vIlAtG~~~  149 (303)
                       +. +    +-.+ +.++.-|.|-|.+.
T Consensus       230 ~G~pKd~FerGme-~hak~TifAEGc~G  256 (621)
T KOG2415|consen  230 DGAPKDTFERGME-FHAKVTIFAEGCHG  256 (621)
T ss_pred             CCCccccccccce-ecceeEEEeccccc
Confidence             00 0    1135 78888899988643

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.72  E-value=2.8e-07  Score=87.10  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=32.6

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g   43 (303)
                      ||+|||+|.||++||..+++.|.+|+|+||....+
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~   35 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTR   35 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence            79999999999999999999999999999987544

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR00551 nadB L-aspartate oxidase

Probab=98.72  E-value=2.8e-07  Score=85.45  Aligned_cols=134  Identities=17%  Similarity=0.178  Sum_probs=78.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc--CcCCC-------Cce--------E----EecC------
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW--KKYSY-------DRL--------R----LHLA------   59 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w--~~~~~-------~~~--------~----~~~~------   59 (303)
                      .+||+|||+|.|||+||..+++.|. |+|+||.+..+|.-  ....+       ++.        .    ...+      
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~   80 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV   80 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence            3699999999999999999999997 99999987554421  11000       000        0    0000      


Q ss_pred             --------cccccCCCCCCCC--------------CCC-----CCCCHHHHHHHHHHHHHH-cCCCceeEeCeEEEEEEE
Q 022090           60 --------KQFCQLPHLPFPS--------------SYP-----MFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASY  111 (303)
Q Consensus        60 --------~~~~~~~~~~~~~--------------~~~-----~~~~~~~l~~~l~~~~~~-~~l~~~i~~~~~V~~i~~  111 (303)
                              ..+.. -..++..              .++     .......+...|.+.+++ .++.+  ++++.++++..
T Consensus        81 ~~~~~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i--~~~~~v~~l~~  157 (488)
T TIGR00551        81 VSDARSAVQWLVD-QGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRI--IEGENALDLLI  157 (488)
T ss_pred             HHhHHHHHHHHHH-cCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEE--EECeEeeeeec
Confidence                    00000 0001100              000     011346788888887776 46555  89999999876


Q ss_pred             eCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090          112 DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       112 ~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      ++ +...-+...+..    +... +.++.||+|||.++.
T Consensus       158 ~~-g~v~Gv~~~~~~----~~~~-i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       158 ET-GRVVGVWVWNRE----TVET-CHADAVVLATGGAGK  190 (488)
T ss_pred             cC-CEEEEEEEEECC----cEEE-EEcCEEEECCCcccC
Confidence            53 222224444321    2246 899999999997664

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.71  E-value=2.3e-07  Score=85.62  Aligned_cols=64  Identities=14%  Similarity=0.304  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHcC-CCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           81 AQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        81 ~~l~~~l~~~~~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      ..+.+.+.+.+++.+ ++.  +++++|++++..+ ++.|.+.+.+..++  +..+ +.+++||+|+|.++.
T Consensus       183 ~~l~~aL~~~a~~~Ggv~i--~~~teV~~I~~~~-dg~~~v~~~~~~~G--~~~~-i~A~~VVvaAGg~s~  247 (494)
T PRK05257        183 GALTRQLVGYLQKQGNFEL--QLGHEVRDIKRND-DGSWTVTVKDLKTG--EKRT-VRAKFVFIGAGGGAL  247 (494)
T ss_pred             HHHHHHHHHHHHhCCCeEE--EeCCEEEEEEECC-CCCEEEEEEEcCCC--ceEE-EEcCEEEECCCcchH
Confidence            456666666676665 444  9999999998754 34588876542221  1136 899999999998653

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.70  E-value=1e-06  Score=81.49  Aligned_cols=105  Identities=15%  Similarity=0.147  Sum_probs=77.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                               .  ...++.+.
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~  229 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-------------------------------A--ADEQVAKE  229 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-------------------------------c--CCHHHHHH
Confidence            46999999999999999999999999999998764310                               0  01256666


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+..++.++..  +++++|++++.++  +...+...++.+   +... +.+|.|++|+|  ..|+..
T Consensus       230 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~~~g---~~~~-i~~D~vl~a~G--~~p~~~  287 (475)
T PRK06327        230 AAKAFTKQGLDI--HLGVKIGEIKTGG--KGVSVAYTDADG---EAQT-LEVDKLIVSIG--RVPNTD  287 (475)
T ss_pred             HHHHHHHcCcEE--EeCcEEEEEEEcC--CEEEEEEEeCCC---ceeE-EEcCEEEEccC--CccCCC
Confidence            677777777665  8999999998654  344555544211   2257 89999999999  666654

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.70  E-value=7.7e-07  Score=84.07  Aligned_cols=39  Identities=21%  Similarity=0.507  Sum_probs=36.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      ..+||+|||+|.+|+++|..++++|.+|+|+||.+..||
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG   48 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG   48 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence            468999999999999999999999999999999987776

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.70  E-value=8.1e-07  Score=81.96  Aligned_cols=105  Identities=18%  Similarity=0.157  Sum_probs=76.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+.                      +         .+  ..++.+.
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l----------------------~---------~~--d~~~~~~  218 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL----------------------P---------NE--DAEVSKE  218 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC----------------------C---------cc--CHHHHHH
Confidence            4689999999999999999999999999999876421                      0         00  1256677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+..++.+++.  +++++|++++.++  +...+.+...+ +  +..+ +++|.||+|+|  ..|+..
T Consensus       219 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~~~-g--~~~~-i~~D~vi~a~G--~~pn~~  276 (466)
T PRK07818        219 IAKQYKKLGVKI--LTGTKVESIDDNG--SKVTVTVSKKD-G--KAQE-LEADKVLQAIG--FAPRVE  276 (466)
T ss_pred             HHHHHHHCCCEE--EECCEEEEEEEeC--CeEEEEEEecC-C--CeEE-EEeCEEEECcC--cccCCC
Confidence            777777778766  9999999997654  34555554111 1  2247 89999999999  555543

>PRK06370 mercuric reductase; Validated

Probab=98.70  E-value=4.3e-07  Score=83.73  Aligned_cols=104  Identities=17%  Similarity=0.182  Sum_probs=76.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                      .           ...++.+.
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~----------------------~-----------~~~~~~~~  217 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP----------------------R-----------EDEDVAAA  217 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc----------------------c-----------cCHHHHHH
Confidence            46899999999999999999999999999998775310                      0           01255667


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+.++..+++.  +++++|.+++..+  +...+.....++    ..+ +.+|.||+|+|  ..|+..
T Consensus       218 l~~~l~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~~~~----~~~-i~~D~Vi~A~G--~~pn~~  274 (463)
T PRK06370        218 VREILEREGIDV--RLNAECIRVERDG--DGIAVGLDCNGG----APE-ITGSHILVAVG--RVPNTD  274 (463)
T ss_pred             HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEEeCCC----ceE-EEeCEEEECcC--CCcCCC
Confidence            777777778665  8999999998654  334454432111    157 89999999999  666543

>PRK12839 hypothetical protein; Provisional

Probab=98.69  E-value=1.6e-06  Score=81.68  Aligned_cols=45  Identities=20%  Similarity=0.409  Sum_probs=38.9

Q ss_pred             CCC-CCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            1 MKE-QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         1 M~~-~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      |++ .+..+||+|||+|.+|+++|..|++.|.+|+|+|+...+||.
T Consensus         1 ~~~~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~   46 (572)
T PRK12839          1 MTPSMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA   46 (572)
T ss_pred             CCCCcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence            542 234689999999999999999999999999999999877764

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.69  E-value=3.1e-07  Score=84.62  Aligned_cols=100  Identities=16%  Similarity=0.164  Sum_probs=76.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                      .           ...++.+.
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~----------------------~-----------~d~~~~~~  221 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS----------------------F-----------LDDEISDA  221 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC----------------------c-----------CCHHHHHH
Confidence            47899999999999999999999999999998765310                      0           01256677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.+++.++..  ++++.|++++..+  +.+.+.+.++       .+ +++|.||+|+|  ..|+.
T Consensus       222 l~~~l~~~gI~v--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~vi~a~G--~~p~~  274 (461)
T PRK05249        222 LSYHLRDSGVTI--RHNEEVEKVEGGD--DGVIVHLKSG-------KK-IKADCLLYANG--RTGNT  274 (461)
T ss_pred             HHHHHHHcCCEE--EECCEEEEEEEeC--CeEEEEECCC-------CE-EEeCEEEEeec--CCccc
Confidence            777777777665  8899999998654  4466665443       46 89999999999  55554

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.69  E-value=2.1e-07  Score=84.06  Aligned_cols=99  Identities=15%  Similarity=0.133  Sum_probs=74.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.+.                                .....+.++
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~  191 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR--------------------------------NAPPPVQRY  191 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh--------------------------------hcCHHHHHH
Confidence            468999999999999999999999999999987653210                                001245667


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+..++.++..  ++++.|++++. +  +.+.+.+.++       .+ +.+|.||+|+|  ..|+
T Consensus       192 l~~~l~~~GV~i--~~~~~V~~i~~-~--~~~~v~l~~g-------~~-i~aD~Vv~a~G--~~pn  242 (396)
T PRK09754        192 LLQRHQQAGVRI--LLNNAIEHVVD-G--EKVELTLQSG-------ET-LQADVVIYGIG--ISAN  242 (396)
T ss_pred             HHHHHHHCCCEE--EeCCeeEEEEc-C--CEEEEEECCC-------CE-EECCEEEECCC--CChh
Confidence            777777778665  88999999865 2  3455666554       56 89999999999  5554

>PLN02815 L-aspartate oxidase

Probab=98.69  E-value=4.8e-07  Score=85.33  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=33.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      .+||+|||+|.|||+||..+++.| +|+|+||....||
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg   65 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES   65 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence            479999999999999999999999 9999999886665

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.68  E-value=3e-07  Score=86.89  Aligned_cols=38  Identities=21%  Similarity=0.335  Sum_probs=33.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS   44 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg   44 (303)
                      .+||+|||+|.||++||..+++.  |.+|+|+||....++
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg   42 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS   42 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence            47999999999999999999987  489999999875453

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.68  E-value=5.1e-07  Score=82.34  Aligned_cols=37  Identities=22%  Similarity=0.443  Sum_probs=33.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      .+||+|||+|.||++||..+. .|.+|+|+||.+..|+
T Consensus         4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg   40 (433)
T PRK06175          4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC   40 (433)
T ss_pred             cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence            579999999999999999985 7999999999887665

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.67  E-value=6.5e-07  Score=82.68  Aligned_cols=40  Identities=23%  Similarity=0.267  Sum_probs=36.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC----CCCeEEEecCCCCCCcc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIW   46 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~----g~~v~iie~~~~~gg~w   46 (303)
                      ..+++|||||++||++|..|.+.    |.+|+|+|+.+.+||..
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~   65 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL   65 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence            57999999999999999999985    68999999999999853

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.67  E-value=1.4e-06  Score=81.27  Aligned_cols=43  Identities=21%  Similarity=0.417  Sum_probs=38.3

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      |.+....+||+|||+| +|+++|.++++.|.+|+|+||.+..||
T Consensus         1 ~~~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg   43 (513)
T PRK12837          1 MSAWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG   43 (513)
T ss_pred             CCCCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            6666667899999999 999999999999999999999886554

>PRK06116 glutathione reductase; Validated

Probab=98.67  E-value=4.2e-07  Score=83.49  Aligned_cols=102  Identities=17%  Similarity=0.116  Sum_probs=77.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.                      +.+           ..++.+.
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------------------~~~-----------~~~~~~~  213 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL----------------------RGF-----------DPDIRET  213 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc----------------------ccc-----------CHHHHHH
Confidence            4689999999999999999999999999999876421                      000           1256677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+.+++.+++.  +++++|.+++.++ ++.+.+.+.++       .+ +.+|.||+|+|  ..|+..
T Consensus       214 l~~~L~~~GV~i--~~~~~V~~i~~~~-~g~~~v~~~~g-------~~-i~~D~Vv~a~G--~~p~~~  268 (450)
T PRK06116        214 LVEEMEKKGIRL--HTNAVPKAVEKNA-DGSLTLTLEDG-------ET-LTVDCLIWAIG--REPNTD  268 (450)
T ss_pred             HHHHHHHCCcEE--ECCCEEEEEEEcC-CceEEEEEcCC-------cE-EEeCEEEEeeC--CCcCCC
Confidence            777777778665  8999999998754 23356666543       56 89999999999  555544

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.67  E-value=6.7e-07  Score=85.18  Aligned_cols=37  Identities=19%  Similarity=0.301  Sum_probs=34.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g   43 (303)
                      .+||+|||+|.||++||..+++.|.+|+|+||....+
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~   44 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK   44 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence            5799999999999999999999999999999987554

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.66  E-value=5e-07  Score=85.41  Aligned_cols=39  Identities=26%  Similarity=0.529  Sum_probs=36.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      ..+||+|||+|++|+++|..++++|.+|+|+||....||
T Consensus         8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG   46 (574)
T PRK12842          8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG   46 (574)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence            468999999999999999999999999999999987775

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.65  E-value=5.1e-08  Score=89.18  Aligned_cols=61  Identities=20%  Similarity=0.248  Sum_probs=42.8

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        78 ~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      .++..+.++|.+.+...|++.  +.+ .|+.+..++++....|.+.++       .+ +++|.+|-|||..+
T Consensus       151 lDR~~fd~~L~~~A~~~Gv~~--~~g-~V~~v~~~~~g~i~~v~~~~g-------~~-i~ad~~IDASG~~s  211 (454)
T PF04820_consen  151 LDRAKFDQFLRRHAEERGVEV--IEG-TVVDVELDEDGRITAVRLDDG-------RT-IEADFFIDASGRRS  211 (454)
T ss_dssp             EEHHHHHHHHHHHHHHTT-EE--EET--EEEEEE-TTSEEEEEEETTS-------EE-EEESEEEE-SGGG-
T ss_pred             EeHHHHHHHHHHHHhcCCCEE--EeC-EEEEEEEcCCCCEEEEEECCC-------CE-EEEeEEEECCCccc
Confidence            468999999999999999874  444 688888777333345666554       67 99999999999533

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.65  E-value=6e-07  Score=77.40  Aligned_cols=153  Identities=18%  Similarity=0.255  Sum_probs=111.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +++++|||||..||..+.-..+.|.+|+++|-.+.+|+...                                 .++...
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD---------------------------------~Eisk~  257 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD---------------------------------GEISKA  257 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC---------------------------------HHHHHH
Confidence            57899999999999999999999999999999888775421                                 167777


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCC--C--Ccc-c
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI--R--GLC-S  161 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~--~--g~~-~  161 (303)
                      ++..+...++.+  ++++.|+.++.+.+ +...+.+.+..++  +.++ +++|.+++|+|  .+|..-.+  .  |++ .
T Consensus       258 ~qr~L~kQgikF--~l~tkv~~a~~~~d-g~v~i~ve~ak~~--k~~t-le~DvlLVsiG--RrP~t~GLgle~iGi~~D  329 (506)
T KOG1335|consen  258 FQRVLQKQGIKF--KLGTKVTSATRNGD-GPVEIEVENAKTG--KKET-LECDVLLVSIG--RRPFTEGLGLEKIGIELD  329 (506)
T ss_pred             HHHHHHhcCcee--EeccEEEEeeccCC-CceEEEEEecCCC--ceeE-EEeeEEEEEcc--CcccccCCChhhcccccc
Confidence            788888888887  99999999998873 3677777765554  5577 99999999999  66654432  1  111 1


Q ss_pred             cccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccC
Q 022090          162 FCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA  210 (303)
Q Consensus       162 ~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~  210 (303)
                      +      .++++...++..    +-.++-.||--.-|--+|....+.|.
T Consensus       330 ~------r~rv~v~~~f~t----~vP~i~~IGDv~~gpMLAhkAeeegI  368 (506)
T KOG1335|consen  330 K------RGRVIVNTRFQT----KVPHIYAIGDVTLGPMLAHKAEEEGI  368 (506)
T ss_pred             c------ccceeccccccc----cCCceEEecccCCcchhhhhhhhhch
Confidence            2      344433332222    22478889987777777776666554

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.64  E-value=2.9e-08  Score=68.21  Aligned_cols=45  Identities=29%  Similarity=0.372  Sum_probs=38.2

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHH
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV  233 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~  233 (303)
                      +++|||+|.+|+|+|..|+++|.+||+++|++ +++|..+...+..
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~-~~~~~~~~~~~~~   45 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD-RLLPGFDPDAAKI   45 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS-SSSTTSSHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc-hhhhhcCHHHHHH
Confidence            68999999999999999999999999999999 6666655544433

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.63  E-value=2.3e-07  Score=83.39  Aligned_cols=38  Identities=24%  Similarity=0.418  Sum_probs=34.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g   43 (303)
                      .++||+|||||++|+++|+.|++.|.+|+++|+....+
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~   40 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG   40 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence            46899999999999999999999999999999987544

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.63  E-value=8.5e-07  Score=81.76  Aligned_cols=105  Identities=15%  Similarity=0.235  Sum_probs=75.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+.                      +.         +  ..++.+.
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il----------------------~~---------~--d~~~~~~  220 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC----------------------PG---------T--DTETAKT  220 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC----------------------CC---------C--CHHHHHH
Confidence            5789999999999999999999999999999876431                      00         0  1245666


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+..++.+++.  ++++.|++++.++  +...+.+....++  +... +.+|.|++|+|  ..|+.
T Consensus       221 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~pn~  278 (466)
T PRK06115        221 LQKALTKQGMKF--KLGSKVTGATAGA--DGVSLTLEPAAGG--AAET-LQADYVLVAIG--RRPYT  278 (466)
T ss_pred             HHHHHHhcCCEE--EECcEEEEEEEcC--CeEEEEEEEcCCC--ceeE-EEeCEEEEccC--Ccccc
Confidence            777777777665  9999999997654  3455544321111  2257 89999999999  55554

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.63  E-value=2e-06  Score=80.99  Aligned_cols=44  Identities=23%  Similarity=0.480  Sum_probs=39.3

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      |..+...+||+|||+|++|+++|..++++|.+|+|+||....||
T Consensus         1 ~~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG   44 (557)
T PRK07843          1 MAMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG   44 (557)
T ss_pred             CCCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence            55556678999999999999999999999999999999887665

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.63  E-value=1.2e-06  Score=88.87  Aligned_cols=40  Identities=25%  Similarity=0.314  Sum_probs=36.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      ..+||+|||+|.||++||..+++.|.+|+|+||.+..||.
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~  447 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN  447 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence            4589999999999999999999999999999999887764

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.62  E-value=6.4e-07  Score=82.17  Aligned_cols=100  Identities=17%  Similarity=0.159  Sum_probs=75.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+.+.                      +.           ...++.+.
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l----------------------~~-----------~d~~~~~~  212 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL----------------------RG-----------FDDDMRAL  212 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC----------------------cc-----------cCHHHHHH
Confidence            4689999999999999999999999999999876421                      00           01256667


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.+++.++..  ++++.|.+++..+  +...+.+.++       .+ +.+|.||+|+|  ..|+.
T Consensus       213 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~viva~G--~~pn~  265 (446)
T TIGR01424       213 LARNMEGRGIRI--HPQTSLTSITKTD--DGLKVTLSHG-------EE-IVADVVLFATG--RSPNT  265 (446)
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEEcC--CeEEEEEcCC-------cE-eecCEEEEeeC--CCcCC
Confidence            777777778665  8999999997654  3355665443       56 89999999999  55554

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.62  E-value=7.1e-07  Score=84.40  Aligned_cols=39  Identities=23%  Similarity=0.421  Sum_probs=34.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCC---CCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQS---IPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g---~~v~iie~~~~~gg   44 (303)
                      ..+||+|||+|.|||+||..+++.|   .+|+|+||....++
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~   45 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS   45 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence            3579999999999999999999998   89999999876554

>PTZ00367 squalene epoxidase; Provisional

Probab=98.61  E-value=7.5e-07  Score=83.45  Aligned_cols=35  Identities=34%  Similarity=0.437  Sum_probs=32.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+||+|||||++|+++|..|++.|++|+|+|++.
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            35799999999999999999999999999999975

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.61  E-value=2.9e-06  Score=80.28  Aligned_cols=40  Identities=18%  Similarity=0.545  Sum_probs=36.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      ..+||+|||+|.+|+++|..++++|.+|+|+|+.+..||.
T Consensus        11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~   50 (581)
T PRK06134         11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT   50 (581)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence            4689999999999999999999999999999998877763

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.60  E-value=8.8e-07  Score=80.51  Aligned_cols=33  Identities=21%  Similarity=0.442  Sum_probs=31.3

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ||+|||||++|+++|.+|++.|.+|+|+|+...
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            899999999999999999999999999999753

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.60  E-value=1.5e-06  Score=82.20  Aligned_cols=38  Identities=24%  Similarity=0.289  Sum_probs=33.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      ..+||+|||+|.||++||..+++. .+|+|+||....++
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g   41 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS   41 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence            357999999999999999999986 99999999865444

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.60  E-value=1.1e-07  Score=82.86  Aligned_cols=36  Identities=39%  Similarity=0.511  Sum_probs=32.9

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g   43 (303)
                      .+|+|||||++|+++|..|.++|++|+|+|+...+-
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R   38 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR   38 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence            589999999999999999999999999999876443

>PRK07846 mycothione reductase; Reviewed

Probab=98.60  E-value=1.7e-06  Score=79.49  Aligned_cols=100  Identities=19%  Similarity=0.243  Sum_probs=71.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||||+.|+.+|..|++.|.+|+++++.+.+.                      +.+           ..++.+.
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll----------------------~~~-----------d~~~~~~  212 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL----------------------RHL-----------DDDISER  212 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc----------------------ccc-----------CHHHHHH
Confidence            4689999999999999999999999999999876431                      000           1244455


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+.. ..++  .+++++++++++.++  +...+.+.++       .+ +.+|.|++|+|  ..|+..
T Consensus       213 l~~l~-~~~v--~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~  265 (451)
T PRK07846        213 FTELA-SKRW--DVRLGRNVVGVSQDG--SGVTLRLDDG-------ST-VEADVLLVATG--RVPNGD  265 (451)
T ss_pred             HHHHH-hcCe--EEEeCCEEEEEEEcC--CEEEEEECCC-------cE-eecCEEEEEEC--CccCcc
Confidence            54433 2354  448899999997654  3455655443       56 89999999999  555544

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.59  E-value=6.7e-08  Score=89.35  Aligned_cols=42  Identities=29%  Similarity=0.449  Sum_probs=39.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~   48 (303)
                      .+||+|||||++||+||..|+++|++|+|+||++.+||..+.
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t   44 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRART   44 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEE
Confidence            479999999999999999999999999999999999995544

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.59  E-value=9e-07  Score=83.63  Aligned_cols=39  Identities=18%  Similarity=0.320  Sum_probs=34.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg   44 (303)
                      ..+||+|||+|.|||+||..+++.  |.+|+|+||....++
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g   43 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS   43 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence            357999999999999999999987  479999999876554

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.59  E-value=1.6e-06  Score=82.19  Aligned_cols=33  Identities=27%  Similarity=0.279  Sum_probs=30.7

Q ss_pred             EEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC
Q 022090           10 VIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (303)
Q Consensus        10 vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~   42 (303)
                      |+|||+|.|||+||..+++.|.+|+|+||.+..
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~   33 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP   33 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence            699999999999999999999999999998733

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.59  E-value=2e-07  Score=90.79  Aligned_cols=112  Identities=13%  Similarity=0.266  Sum_probs=71.8

Q ss_pred             cEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCC---C-Cc--cCcC--------------------CCCceEEecCc
Q 022090            9 EVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY---A-SI--WKKY--------------------SYDRLRLHLAK   60 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~---g-g~--w~~~--------------------~~~~~~~~~~~   60 (303)
                      +|+|||||++|+++|..|++.  |++|+|+|+++..   | |.  +...                    .+.........
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g   81 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG   81 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence            799999999999999999998  8999999998753   2 11  1100                    00011100000


Q ss_pred             ccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeC
Q 022090           61 QFCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR  139 (303)
Q Consensus        61 ~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad  139 (303)
                      ...      ...... ....+.++.+.|.+.+.+.+++.  +++++|+++..                     .. ..+|
T Consensus        82 ~~~------~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i--~~g~~v~~i~~---------------------~~-~~~D  131 (765)
T PRK08255         82 RRI------RSGGHGFAGIGRKRLLNILQARCEELGVKL--VFETEVPDDQA---------------------LA-ADAD  131 (765)
T ss_pred             EEE------EECCeeEecCCHHHHHHHHHHHHHHcCCEE--EeCCccCchhh---------------------hh-cCCC
Confidence            000      000001 12568999999999998888655  88887765421                     12 4689


Q ss_pred             EEEEccCCCCC
Q 022090          140 FLVVASGETTN  150 (303)
Q Consensus       140 ~vIlAtG~~~~  150 (303)
                      .||.|+|.+|.
T Consensus       132 ~VVgADG~~S~  142 (765)
T PRK08255        132 LVIASDGLNSR  142 (765)
T ss_pred             EEEEcCCCCHH
Confidence            99999997663

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.59  E-value=6.4e-07  Score=79.52  Aligned_cols=132  Identities=18%  Similarity=0.326  Sum_probs=90.8

Q ss_pred             CcEEEECCcHHHHHHHHHHhhC-------------CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQ-------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSY   74 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~-------------g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (303)
                      .+|+|+|||+.|..+|..|.+.             ..+|+++|+.+.+-                      +.++     
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL----------------------p~~~-----  208 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL----------------------PMFP-----  208 (405)
T ss_pred             eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc----------------------cCCC-----
Confidence            3799999999999999999764             13889999987641                      2222     


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           75 PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        75 ~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                            +++.+|.++..++.|+++  ++++.|++++.+.      |++.+++      ++ +.++.+|-|+|....|..-
T Consensus       209 ------~~l~~~a~~~L~~~GV~v--~l~~~Vt~v~~~~------v~~~~g~------~~-I~~~tvvWaaGv~a~~~~~  267 (405)
T COG1252         209 ------PKLSKYAERALEKLGVEV--LLGTPVTEVTPDG------VTLKDGE------EE-IPADTVVWAAGVRASPLLK  267 (405)
T ss_pred             ------HHHHHHHHHHHHHCCCEE--EcCCceEEECCCc------EEEccCC------ee-EecCEEEEcCCCcCChhhh
Confidence                  377889999999999877  9999999998766      6666542      36 8999999999976555544


Q ss_pred             CCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCC
Q 022090          155 DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSG  195 (303)
Q Consensus       155 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G  195 (303)
                      .+-|.+.-.     .|++.-.......   ...+|.++|-.
T Consensus       268 ~l~~~e~dr-----~Grl~V~~~L~~~---~~~~IFa~GD~  300 (405)
T COG1252         268 DLSGLETDR-----RGRLVVNPTLQVP---GHPDIFAAGDC  300 (405)
T ss_pred             hcChhhhcc-----CCCEEeCCCcccC---CCCCeEEEecc
Confidence            432233110     3555544433321   12467777743

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.58  E-value=1.2e-06  Score=80.48  Aligned_cols=103  Identities=15%  Similarity=0.053  Sum_probs=76.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||||+.|+.+|..|++.|.+|+++++.+.+.                      +.+           ..++.+.
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il----------------------~~~-----------d~~~~~~  212 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL----------------------RSF-----------DSMISET  212 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC----------------------ccc-----------CHHHHHH
Confidence            4689999999999999999999999999999876531                      000           1256677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+..+..++..  ++++.|++++.+. .+...+.+.++     + .. +.+|.||+|+|  ..|+..
T Consensus       213 ~~~~l~~~gI~i--~~~~~v~~i~~~~-~~~~~v~~~~g-----~-~~-i~~D~vi~a~G--~~pn~~  268 (450)
T TIGR01421       213 ITEEYEKEGINV--HKLSKPVKVEKTV-EGKLVIHFEDG-----K-SI-DDVDELIWAIG--RKPNTK  268 (450)
T ss_pred             HHHHHHHcCCEE--EcCCEEEEEEEeC-CceEEEEECCC-----c-EE-EEcCEEEEeeC--CCcCcc
Confidence            777777778766  8999999997654 23345555442     1 46 89999999999  555543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.58  E-value=1.7e-06  Score=81.16  Aligned_cols=38  Identities=21%  Similarity=0.375  Sum_probs=34.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      ..+||+|||+|.||++||..+++. .+|+|+||....+|
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g   44 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG   44 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence            457999999999999999999887 89999999886665

>PLN02507 glutathione reductase

Probab=98.58  E-value=1e-06  Score=81.87  Aligned_cols=101  Identities=13%  Similarity=0.106  Sum_probs=76.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+-                      +.           ...++.+.
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l----------------------~~-----------~d~~~~~~  249 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL----------------------RG-----------FDDEMRAV  249 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC----------------------cc-----------cCHHHHHH
Confidence            4689999999999999999999999999999876421                      00           01256677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+..++.+++.  ++++.|++++..+  +...+.+.++       .+ +.+|.|++|+|  ..|+..
T Consensus       250 l~~~l~~~GI~i--~~~~~V~~i~~~~--~~~~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~  303 (499)
T PLN02507        250 VARNLEGRGINL--HPRTNLTQLTKTE--GGIKVITDHG-------EE-FVADVVLFATG--RAPNTK  303 (499)
T ss_pred             HHHHHHhCCCEE--EeCCEEEEEEEeC--CeEEEEECCC-------cE-EEcCEEEEeec--CCCCCC
Confidence            777777778665  8999999997654  3455655443       56 89999999999  555543

>PRK07208 hypothetical protein; Provisional

Probab=98.58  E-value=1.8e-07  Score=86.66  Aligned_cols=44  Identities=27%  Similarity=0.430  Sum_probs=40.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY   49 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~   49 (303)
                      .++||+|||||++||++|..|.++|++|+|+|+++.+||.+...
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~   46 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTV   46 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeee
Confidence            45799999999999999999999999999999999999976543

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.58  E-value=2.6e-06  Score=78.48  Aligned_cols=103  Identities=17%  Similarity=0.213  Sum_probs=73.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..                      .           ...++.+.
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~----------------------~-----------~d~~~~~~  215 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP----------------------L-----------EDPEVSKQ  215 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc----------------------c-----------hhHHHHHH
Confidence            46899999999999999999999999999998765320                      0           01255666


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+..++. ++.  ++++++.+++..+. ....+...++     +..+ +.+|.||+|+|  ..|+..
T Consensus       216 ~~~~l~~~-I~i--~~~~~v~~i~~~~~-~~v~~~~~~~-----~~~~-i~~D~vi~a~G--~~p~~~  271 (460)
T PRK06292        216 AQKILSKE-FKI--KLGAKVTSVEKSGD-EKVEELEKGG-----KTET-IEADYVLVATG--RRPNTD  271 (460)
T ss_pred             HHHHHhhc-cEE--EcCCEEEEEEEcCC-ceEEEEEcCC-----ceEE-EEeCEEEEccC--CccCCC
Confidence            66666655 554  88999999976542 2333333222     2257 89999999999  666654

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.57  E-value=2.7e-06  Score=80.35  Aligned_cols=38  Identities=18%  Similarity=0.320  Sum_probs=33.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS   44 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg   44 (303)
                      .+||+|||+|.||++||..+++.  |.+|+|+||....++
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~   42 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS   42 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence            47999999999999999999987  579999999876554

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.57  E-value=7.8e-08  Score=88.33  Aligned_cols=39  Identities=28%  Similarity=0.399  Sum_probs=37.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      .+++|+|||||+|||+||+.|.+.|++|+|+|.++.+||
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG   52 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG   52 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence            467999999999999999999999999999999999998

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.57  E-value=1.1e-06  Score=80.96  Aligned_cols=101  Identities=17%  Similarity=0.166  Sum_probs=76.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+++|||+|..|+.+|..|++.|.+|+++++.+.+..                               .+  ..++.+.
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~~--d~~~~~~  223 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-------------------------------GE--DADAAEV  223 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-------------------------------CC--CHHHHHH
Confidence            46899999999999999999999999999998764310                               00  1245667


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+..++.++..  ++++++++++.++  +.+.+.+.++       .+ +++|.|++|+|  ..|+..
T Consensus       224 l~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~g-------~~-l~~D~vl~a~G--~~pn~~  277 (466)
T PRK07845        224 LEEVFARRGMTV--LKRSRAESVERTG--DGVVVTLTDG-------RT-VEGSHALMAVG--SVPNTA  277 (466)
T ss_pred             HHHHHHHCCcEE--EcCCEEEEEEEeC--CEEEEEECCC-------cE-EEecEEEEeec--CCcCCC
Confidence            777777778665  8899999997654  4455665543       56 89999999999  555543

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.56  E-value=4.9e-06  Score=78.25  Aligned_cols=39  Identities=23%  Similarity=0.465  Sum_probs=36.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      ..+||+|||+| +|+++|..+++.|.+|+|+||.+.+||.
T Consensus        15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~   53 (564)
T PRK12845         15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS   53 (564)
T ss_pred             ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence            46899999999 8999999999999999999999888874

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.56  E-value=6.5e-07  Score=83.99  Aligned_cols=38  Identities=26%  Similarity=0.565  Sum_probs=33.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      ..+||+|||+|.||++||..+. .|.+|+|+||.+..||
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg   45 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS   45 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence            4689999999999999999996 5999999999886655

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.55  E-value=1.8e-06  Score=79.72  Aligned_cols=104  Identities=14%  Similarity=0.149  Sum_probs=73.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.                      +.+           ..++.+.
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il----------------------~~~-----------d~~~~~~  220 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI----------------------PAA-----------DKDIVKV  220 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC----------------------CcC-----------CHHHHHH
Confidence            4689999999999999999999999999999887531                      000           1245566


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+..+.. +.  +++++.|+.++..+  +...+...++.+   +..+ +.+|.||+|+|  ..|+..
T Consensus       221 ~~~~l~~~-v~--i~~~~~v~~i~~~~--~~~~v~~~~~~~---~~~~-i~~D~vi~a~G--~~pn~~  277 (471)
T PRK06467        221 FTKRIKKQ-FN--IMLETKVTAVEAKE--DGIYVTMEGKKA---PAEP-QRYDAVLVAVG--RVPNGK  277 (471)
T ss_pred             HHHHHhhc-eE--EEcCCEEEEEEEcC--CEEEEEEEeCCC---cceE-EEeCEEEEeec--ccccCC
Confidence            66655544 44  48899999997654  345565544211   1257 89999999999  566544

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.55  E-value=3.1e-06  Score=81.00  Aligned_cols=38  Identities=18%  Similarity=0.323  Sum_probs=34.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g   43 (303)
                      ..+||+|||+|.|||+||..+++.|.+|+|+|+.+..+
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~   41 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR   41 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence            35799999999999999999999999999999876543

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.55  E-value=9.7e-07  Score=80.98  Aligned_cols=99  Identities=17%  Similarity=0.271  Sum_probs=73.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+-.                           .   .+  ..++.++
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---------------------------~---~~--~~~~~~~  196 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP---------------------------D---SF--DKEITDV  196 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc---------------------------h---hc--CHHHHHH
Confidence            46899999999999999999999999999988764210                           0   00  1367778


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+.+++.+++.  +++++|++++.++  ..+.+...+        .+ +.+|.||+|+|  ..|+
T Consensus       197 l~~~l~~~gI~v--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~d~vi~a~G--~~p~  247 (444)
T PRK09564        197 MEEELRENGVEL--HLNEFVKSLIGED--KVEGVVTDK--------GE-YEADVVIVATG--VKPN  247 (444)
T ss_pred             HHHHHHHCCCEE--EcCCEEEEEecCC--cEEEEEeCC--------CE-EEcCEEEECcC--CCcC
Confidence            888888888765  8999999996432  334444432        46 89999999999  5444

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.55  E-value=1.5e-06  Score=80.95  Aligned_cols=37  Identities=24%  Similarity=0.418  Sum_probs=33.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      .+||+|||+|.||++||..+++ |.+|+|+||.+..+|
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g   39 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS   39 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence            4799999999999999999976 899999999886555

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.55  E-value=1.4e-06  Score=79.89  Aligned_cols=99  Identities=20%  Similarity=0.247  Sum_probs=74.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.                      +         .+  ..++.+.
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l----------------------~---------~~--~~~~~~~  204 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL----------------------P---------RE--DRDIADN  204 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC----------------------C---------Cc--CHHHHHH
Confidence            4689999999999999999999999999999876421                      0         00  1256677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.+++.+++.  +++++|.+++.++  +.+.+...+        .+ +.+|.|++|+|  ..|+.
T Consensus       205 l~~~l~~~gV~v--~~~~~v~~i~~~~--~~v~v~~~~--------g~-i~~D~vl~a~G--~~pn~  256 (441)
T PRK08010        205 IATILRDQGVDI--ILNAHVERISHHE--NQVQVHSEH--------AQ-LAVDALLIASG--RQPAT  256 (441)
T ss_pred             HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEcC--------Ce-EEeCEEEEeec--CCcCC
Confidence            777788888766  8899999998654  445554433        35 78999999999  55554

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.54  E-value=1.1e-06  Score=80.09  Aligned_cols=99  Identities=17%  Similarity=0.304  Sum_probs=73.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|++|+.+|..|++.|.+|+++++.+.+..                              +.+  ..++.++
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~~~--~~~~~~~  184 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------KLF--DEEMNQI  184 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------ccc--CHHHHHH
Confidence            46899999999999999999999999999998764310                              000  1256677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.+++.+++.  ++++.|.+++.++  . . +...++       .+ +.+|.||+|+|  ..|+.
T Consensus       185 ~~~~l~~~gV~v--~~~~~v~~i~~~~--~-~-v~~~~g-------~~-i~~D~vi~a~G--~~p~~  235 (427)
T TIGR03385       185 VEEELKKHEINL--RLNEEVDSIEGEE--R-V-KVFTSG-------GV-YQADMVILATG--IKPNS  235 (427)
T ss_pred             HHHHHHHcCCEE--EeCCEEEEEecCC--C-E-EEEcCC-------CE-EEeCEEEECCC--ccCCH
Confidence            777778888766  8899999997543  2 2 344433       56 89999999999  55543

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.52  E-value=5.3e-06  Score=78.11  Aligned_cols=40  Identities=20%  Similarity=0.389  Sum_probs=36.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      ..+||+|||+|.+|+++|..|++.|.+|+|+|+....||+
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~   44 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS   44 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence            4689999999999999999999999999999998776663

>PRK14727 putative mercuric reductase; Provisional

Probab=98.51  E-value=2.2e-06  Score=79.29  Aligned_cols=99  Identities=14%  Similarity=0.146  Sum_probs=74.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|.+.|.+|+++++...+.                       .           ...++.+.
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~-----------------------~-----------~d~~~~~~  233 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF-----------------------R-----------EDPLLGET  233 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC-----------------------c-----------chHHHHHH
Confidence            4689999999999999999999999999998743210                       0           01256677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+.+++.++..  +++++|++++.++  +.+.+...+        .+ +.+|.||+|+|  ..|+..
T Consensus       234 l~~~L~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~--------g~-i~aD~VlvA~G--~~pn~~  286 (479)
T PRK14727        234 LTACFEKEGIEV--LNNTQASLVEHDD--NGFVLTTGH--------GE-LRAEKLLISTG--RHANTH  286 (479)
T ss_pred             HHHHHHhCCCEE--EcCcEEEEEEEeC--CEEEEEEcC--------Ce-EEeCEEEEccC--CCCCcc
Confidence            777778778766  8899999997654  445555433        45 78999999999  555443

>PRK14694 putative mercuric reductase; Provisional

Probab=98.51  E-value=2.1e-06  Score=79.28  Aligned_cols=99  Identities=16%  Similarity=0.224  Sum_probs=73.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+++|||+|+.|+.+|..|++.|.+|+++++...+.                       .           ...++.+.
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~-----------------------~-----------~~~~~~~~  223 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS-----------------------Q-----------EDPAVGEA  223 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC-----------------------C-----------CCHHHHHH
Confidence            4689999999999999999999999999998643210                       0           01256677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+..++.+++.  ++++.|.+++.++  +.+.+...+        .+ +.+|.||+|+|  ..|+..
T Consensus       224 l~~~l~~~GI~v--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~D~vi~a~G--~~pn~~  276 (468)
T PRK14694        224 IEAAFRREGIEV--LKQTQASEVDYNG--REFILETNA--------GT-LRAEQLLVATG--RTPNTE  276 (468)
T ss_pred             HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEECC--------CE-EEeCEEEEccC--CCCCcC
Confidence            777777778766  8899999997654  445554432        46 89999999999  555543

>TIGR03452 mycothione_red mycothione reductase

Probab=98.50  E-value=2.3e-06  Score=78.61  Aligned_cols=100  Identities=18%  Similarity=0.228  Sum_probs=71.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                      +.          . ..++.+.
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll----------------------~~----------~-d~~~~~~  215 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL----------------------RH----------L-DEDISDR  215 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc----------------------cc----------c-CHHHHHH
Confidence            4689999999999999999999999999999876421                      00          0 0244455


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+..+ .++.  ++++++|++++.++  +...+.+.++       .+ +++|.|++|+|  ..|+..
T Consensus       216 l~~~~~-~gI~--i~~~~~V~~i~~~~--~~v~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~  268 (452)
T TIGR03452       216 FTEIAK-KKWD--IRLGRNVTAVEQDG--DGVTLTLDDG-------ST-VTADVLLVATG--RVPNGD  268 (452)
T ss_pred             HHHHHh-cCCE--EEeCCEEEEEEEcC--CeEEEEEcCC-------CE-EEcCEEEEeec--cCcCCC
Confidence            554433 3544  48899999998654  3455665443       46 89999999999  555543

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.48  E-value=1.3e-06  Score=79.95  Aligned_cols=96  Identities=15%  Similarity=0.152  Sum_probs=72.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                 ...++.+.
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~---------------------------------~d~~~~~~  194 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL---------------------------------MDADMNQP  194 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh---------------------------------cCHHHHHH
Confidence            468999999999999999999999999999987643200                                 01256667


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+..++.++..  ++++.|++++.      ..+.+.++       .. +.+|.|++|+|  ..|+.
T Consensus       195 l~~~l~~~gI~i--~~~~~v~~i~~------~~v~~~~g-------~~-~~~D~vl~a~G--~~pn~  243 (438)
T PRK13512        195 ILDELDKREIPY--RLNEEIDAING------NEVTFKSG-------KV-EHYDMIIEGVG--THPNS  243 (438)
T ss_pred             HHHHHHhcCCEE--EECCeEEEEeC------CEEEECCC-------CE-EEeCEEEECcC--CCcCh
Confidence            777777778765  88999998852      13555443       46 89999999999  55543

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.47  E-value=8e-06  Score=77.29  Aligned_cols=40  Identities=23%  Similarity=0.481  Sum_probs=36.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      .+||+|||+|.+|+++|..++++|.+|+|+|+....||+.
T Consensus        16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~   55 (578)
T PRK12843         16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT   55 (578)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            5799999999999999999999999999999988777754

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.47  E-value=2.8e-06  Score=78.55  Aligned_cols=101  Identities=14%  Similarity=0.105  Sum_probs=74.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC---CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (303)
                      +.+++|||||+.|+.+|..+...   |.+|+|+++.+.+.                      +.+           ..++
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il----------------------~~~-----------d~~~  233 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL----------------------RGF-----------DSTL  233 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc----------------------ccc-----------CHHH
Confidence            46899999999999999766544   99999999877531                      000           1366


Q ss_pred             HHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      .+.+.+..++.++..  ++++.+++++..+ ++...+.+.++       .+ +.+|.||+|+|  ..|+.
T Consensus       234 ~~~l~~~L~~~GI~i--~~~~~v~~i~~~~-~~~~~v~~~~g-------~~-i~~D~vl~a~G--~~Pn~  290 (486)
T TIGR01423       234 RKELTKQLRANGINI--MTNENPAKVTLNA-DGSKHVTFESG-------KT-LDVDVVMMAIG--RVPRT  290 (486)
T ss_pred             HHHHHHHHHHcCCEE--EcCCEEEEEEEcC-CceEEEEEcCC-------CE-EEcCEEEEeeC--CCcCc
Confidence            777778788778665  8999999997654 23345555443       46 89999999999  55554

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.47  E-value=5.1e-07  Score=81.35  Aligned_cols=132  Identities=16%  Similarity=0.170  Sum_probs=77.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC----------CCCCccCcCCCCceEE-------ecCcccccCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN----------CYASIWKKYSYDRLRL-------HLAKQFCQLPHLP   69 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~----------~~gg~w~~~~~~~~~~-------~~~~~~~~~~~~~   69 (303)
                      .+||+|||||+||+.||...++.|.++.++.-+.          .+||.-..+....+-.       .......+|.-+.
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN   83 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN   83 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence            4899999999999999999999999998887643          2333211110000000       0000111111110


Q ss_pred             C---C--CCCCCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEE
Q 022090           70 F---P--SSYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV  143 (303)
Q Consensus        70 ~---~--~~~~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIl  143 (303)
                      .   |  .......++..+..++++.++.. ++.   .++..|+++..++....+-|.+..+       .. +.|+.||+
T Consensus        84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~---l~q~~v~dli~e~~~~v~GV~t~~G-------~~-~~a~aVVl  152 (621)
T COG0445          84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLH---LLQGEVEDLIVEEGQRVVGVVTADG-------PE-FHAKAVVL  152 (621)
T ss_pred             CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCce---ehHhhhHHHhhcCCCeEEEEEeCCC-------Ce-eecCEEEE
Confidence            0   1  01112344556666677766654 332   5667787777655233466777665       57 89999999


Q ss_pred             ccCCCC
Q 022090          144 ASGETT  149 (303)
Q Consensus       144 AtG~~~  149 (303)
                      +||.+-
T Consensus       153 TTGTFL  158 (621)
T COG0445         153 TTGTFL  158 (621)
T ss_pred             eecccc
Confidence            999644

>PTZ00058 glutathione reductase; Provisional

Probab=98.47  E-value=2.7e-06  Score=79.72  Aligned_cols=102  Identities=16%  Similarity=0.166  Sum_probs=74.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.                      +.         +  ..++.+.
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il----------------------~~---------~--d~~i~~~  283 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL----------------------RK---------F--DETIINE  283 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc----------------------cc---------C--CHHHHHH
Confidence            5789999999999999999999999999999876421                      00         0  1256677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+..++.+++.  +++..|.+++.++. +...+...++     + .+ +++|.|++|+|  ..|+.
T Consensus       284 l~~~L~~~GV~i--~~~~~V~~I~~~~~-~~v~v~~~~~-----~-~~-i~aD~VlvA~G--r~Pn~  338 (561)
T PTZ00058        284 LENDMKKNNINI--ITHANVEEIEKVKE-KNLTIYLSDG-----R-KY-EHFDYVIYCVG--RSPNT  338 (561)
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEecCC-CcEEEEECCC-----C-EE-EECCEEEECcC--CCCCc
Confidence            777777778765  89999999976542 2344443332     1 57 89999999999  55553

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.46  E-value=6.6e-07  Score=80.31  Aligned_cols=36  Identities=22%  Similarity=0.323  Sum_probs=32.6

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g   43 (303)
                      .+|+|||||++|+.+|..|++.|++|+|||+.+..+
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~   36 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL   36 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence            379999999999999999999999999999876543

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.46  E-value=1.8e-06  Score=84.64  Aligned_cols=103  Identities=15%  Similarity=0.159  Sum_probs=76.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+++|||||+.|+.+|..|++.|.+|+|+++.+.+-.                               ... ..+..+.
T Consensus       145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~-------------------------------~~l-d~~~~~~  192 (847)
T PRK14989        145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA-------------------------------EQL-DQMGGEQ  192 (847)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh-------------------------------hhc-CHHHHHH
Confidence            45899999999999999999999999999998764210                               000 1255677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.++..++.+  ++++.++++..+.......+.+.++       .+ +.+|.||+|+|  .+|+.
T Consensus       193 l~~~L~~~GV~v--~~~~~v~~I~~~~~~~~~~v~~~dG-------~~-i~~D~Vv~A~G--~rPn~  247 (847)
T PRK14989        193 LRRKIESMGVRV--HTSKNTLEIVQEGVEARKTMRFADG-------SE-LEVDFIVFSTG--IRPQD  247 (847)
T ss_pred             HHHHHHHCCCEE--EcCCeEEEEEecCCCceEEEEECCC-------CE-EEcCEEEECCC--cccCc
Confidence            777888888766  9999999997643223445666554       56 89999999999  55553

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.46  E-value=3.9e-06  Score=77.63  Aligned_cols=102  Identities=14%  Similarity=0.063  Sum_probs=74.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+++|||||+.|+.+|..|++.|.+|+++++...+                       +.+           ..++.++
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l-----------------------~~~-----------d~~~~~~  225 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL-----------------------RGF-----------DQDCANK  225 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccc-----------------------ccc-----------CHHHHHH
Confidence            458999999999999999999999999999864211                       000           1256677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+..+..+++.  ++++.++.+...+  +...+...++..    ..+ +.+|.||+|+|  ..|+.
T Consensus       226 l~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~~~~----~~~-i~~D~vl~a~G--~~pn~  281 (484)
T TIGR01438       226 VGEHMEEHGVKF--KRQFVPIKVEQIE--AKVKVTFTDSTN----GIE-EEYDTVLLAIG--RDACT  281 (484)
T ss_pred             HHHHHHHcCCEE--EeCceEEEEEEcC--CeEEEEEecCCc----ceE-EEeCEEEEEec--CCcCC
Confidence            777778778766  8898888887654  344555544321    147 89999999999  55554

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.46  E-value=4.3e-07  Score=80.47  Aligned_cols=39  Identities=21%  Similarity=0.374  Sum_probs=37.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      ..+++|||||++|+++|..|++.|++|.++|+++.+||.
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr  162 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR  162 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence            368999999999999999999999999999999999986

>PRK13748 putative mercuric reductase; Provisional

Probab=98.43  E-value=3.5e-06  Score=79.68  Aligned_cols=99  Identities=15%  Similarity=0.159  Sum_probs=74.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|.+.|.+|+++++...+.                       .           ...++...
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~-----------------------~-----------~d~~~~~~  315 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF-----------------------R-----------EDPAIGEA  315 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc-----------------------c-----------cCHHHHHH
Confidence            4689999999999999999999999999998753210                       0           01256677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+..+..++..  ++++.|++++.++  +.+.+...+        .+ +.+|.||+|+|  ..|+..
T Consensus       316 l~~~l~~~gI~i--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~D~vi~a~G--~~pn~~  368 (561)
T PRK13748        316 VTAAFRAEGIEV--LEHTQASQVAHVD--GEFVLTTGH--------GE-LRADKLLVATG--RAPNTR  368 (561)
T ss_pred             HHHHHHHCCCEE--EcCCEEEEEEecC--CEEEEEecC--------Ce-EEeCEEEEccC--CCcCCC
Confidence            777777778766  8899999997654  445555433        36 89999999999  666543

>PRK07233 hypothetical protein; Provisional

Probab=98.42  E-value=6.9e-07  Score=81.57  Aligned_cols=40  Identities=23%  Similarity=0.390  Sum_probs=37.3

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~   48 (303)
                      +|+|||||++||++|..|++.|++|+|+|+++.+||....
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s   40 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS   40 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence            6999999999999999999999999999999999997543

>PLN02576 protoporphyrinogen oxidase

Probab=98.40  E-value=7e-07  Score=83.09  Aligned_cols=41  Identities=32%  Similarity=0.445  Sum_probs=38.1

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhC-CCCeEEEecCCCCCCc
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASI   45 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~iie~~~~~gg~   45 (303)
                      +..+||+|||||++||++|..|.+. |.+|+|+|+++.+||.
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr   51 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN   51 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence            4567999999999999999999999 9999999999999984

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.40  E-value=5.7e-06  Score=76.91  Aligned_cols=100  Identities=17%  Similarity=0.044  Sum_probs=73.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+++|||+|+.|+.+|..|++.|.+|+++++...+                       +.+           ..++.+.
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l-----------------------~~~-----------d~~~~~~  227 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL-----------------------RGF-----------DRQCSEK  227 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc-----------------------ccC-----------CHHHHHH
Confidence            458999999999999999999999999999864211                       000           1246677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+.+++.+++.  ++++.+.+++..+  +...+.+.++       .+ +.+|.|++|+|  ..|+..
T Consensus       228 l~~~l~~~GV~i--~~~~~v~~v~~~~--~~~~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~  281 (499)
T PTZ00052        228 VVEYMKEQGTLF--LEGVVPINIEKMD--DKIKVLFSDG-------TT-ELFDTVLYATG--RKPDIK  281 (499)
T ss_pred             HHHHHHHcCCEE--EcCCeEEEEEEcC--CeEEEEECCC-------CE-EEcCEEEEeeC--CCCCcc
Confidence            777777778665  8898888887654  3345655443       46 79999999999  555543

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.40  E-value=2.6e-06  Score=83.30  Aligned_cols=101  Identities=11%  Similarity=0.104  Sum_probs=74.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+++|||||+.|+.+|..|++.|.+|+++++.+.+-.                               ... ...+...
T Consensus       140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-------------------------------~~l-d~~~~~~  187 (785)
T TIGR02374       140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-------------------------------KQL-DQTAGRL  187 (785)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-------------------------------hhc-CHHHHHH
Confidence            46899999999999999999999999999998764210                               000 1245566


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+..+..++.+  ++++.++++..+.  ....|.+.++       .+ +.+|.||+|+|  .+|+.
T Consensus       188 l~~~l~~~GV~v--~~~~~v~~i~~~~--~~~~v~~~dG-------~~-i~~D~Vi~a~G--~~Pn~  240 (785)
T TIGR02374       188 LQRELEQKGLTF--LLEKDTVEIVGAT--KADRIRFKDG-------SS-LEADLIVMAAG--IRPND  240 (785)
T ss_pred             HHHHHHHcCCEE--EeCCceEEEEcCC--ceEEEEECCC-------CE-EEcCEEEECCC--CCcCc
Confidence            777777788766  8898888886533  3345666654       57 89999999999  55554

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.39  E-value=3.8e-06  Score=75.99  Aligned_cols=102  Identities=18%  Similarity=0.258  Sum_probs=77.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+++|||+|+.|+.+|..|+++|++|+++|+.+.+++...                               . ..+.+.
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~-------------------------------~-~~~~~~  183 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL-------------------------------D-PEVAEE  183 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh-------------------------------h-HHHHHH
Confidence            36999999999999999999999999999999987653310                               0 367788


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEE-EEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+..+.++++.  +++..+.+++......... +...++       .. +++|.+++++|  ..|+
T Consensus       184 ~~~~l~~~gi~~--~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~-~~~d~~~~~~g--~~p~  238 (415)
T COG0446         184 LAELLEKYGVEL--LLGTKVVGVEGKGNTLVVERVVGIDG-------EE-IKADLVIIGPG--ERPN  238 (415)
T ss_pred             HHHHHHHCCcEE--EeCCceEEEEcccCcceeeEEEEeCC-------cE-EEeeEEEEeec--cccc
Confidence            888888888655  8999999998765211111 233332       56 89999999999  5553

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.38  E-value=4.9e-07  Score=83.02  Aligned_cols=39  Identities=23%  Similarity=0.352  Sum_probs=35.9

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCCCcc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIW   46 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w   46 (303)
                      ++|+|||||++||+||..|++.|  ++|+|+|+++.+||..
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~   41 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKI   41 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceE
Confidence            37999999999999999999987  8999999999999843

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.38  E-value=2.2e-06  Score=74.09  Aligned_cols=137  Identities=21%  Similarity=0.166  Sum_probs=75.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC-----------CCCCccCc------CCCC--------ceEEecCc-
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-----------CYASIWKK------YSYD--------RLRLHLAK-   60 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~-----------~~gg~w~~------~~~~--------~~~~~~~~-   60 (303)
                      ..||+|||||.+|.++|..|++.|-+|.++||+-           +.||....      .+.+        +..+.... 
T Consensus        45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~gk  124 (509)
T KOG1298|consen   45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDGK  124 (509)
T ss_pred             cccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCCc
Confidence            5799999999999999999999999999999964           33331100      0000        01111111 


Q ss_pred             -ccccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEee
Q 022090           61 -QFCQLPHLPFPSSYPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG  138 (303)
Q Consensus        61 -~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a  138 (303)
                       .-..||...++.+... -.+...+.+.+++.+.....-.  ..+.+|.++-.++ +-..-|+.++..+   ++.+ ..|
T Consensus       125 ~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~--~eeGtV~sLlee~-gvvkGV~yk~k~g---ee~~-~~A  197 (509)
T KOG1298|consen  125 EVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVR--LEEGTVKSLLEEE-GVVKGVTYKNKEG---EEVE-AFA  197 (509)
T ss_pred             eeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeE--EeeeeHHHHHhcc-CeEEeEEEecCCC---ceEE-Eec
Confidence             1111222222222211 1123456666776665442111  4455666665554 1222344444333   3356 678


Q ss_pred             CEEEEccCCCCC
Q 022090          139 RFLVVASGETTN  150 (303)
Q Consensus       139 d~vIlAtG~~~~  150 (303)
                      -.-|+|+|.+|+
T Consensus       198 pLTvVCDGcfSn  209 (509)
T KOG1298|consen  198 PLTVVCDGCFSN  209 (509)
T ss_pred             ceEEEecchhHH
Confidence            889999999874

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.37  E-value=3.7e-06  Score=71.07  Aligned_cols=38  Identities=18%  Similarity=0.343  Sum_probs=34.8

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      ..|+|||+|.|||+++..+...|-.|+++|++..+||.
T Consensus        10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGN   47 (477)
T KOG2404|consen   10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGN   47 (477)
T ss_pred             CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCc
Confidence            36999999999999999999998789999999988884

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=98.37  E-value=1.1e-06  Score=76.52  Aligned_cols=180  Identities=14%  Similarity=0.170  Sum_probs=99.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCC--------CccCcCCCCceEEecCcccccCCCCCCCC----
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA--------SIWKKYSYDRLRLHLAKQFCQLPHLPFPS----   72 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~g--------g~w~~~~~~~~~~~~~~~~~~~~~~~~~~----   72 (303)
                      +.-.+|||+|.+..+++......  +.+|.++-..+.+.        ..|.+. .+.       ..-.+.+-+|..    
T Consensus       178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~-dpn-------~~k~lrfkqwsGkeRs  249 (659)
T KOG1346|consen  178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYG-DPN-------SAKKLRFKQWSGKERS  249 (659)
T ss_pred             cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecC-CCC-------hhhheeecccCCccce
Confidence            45789999999999888776654  66888887665433        123321 000       000001111100    


Q ss_pred             ----CCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090           73 ----SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (303)
Q Consensus        73 ----~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~  148 (303)
                          -...|.+.+++-.     +..-|+.+  ..+..|..++..+    ..|.++++       .+ |.||.++||||  
T Consensus       250 iffepd~FfvspeDLp~-----~~nGGvAv--l~G~kvvkid~~d----~~V~LnDG-------~~-I~YdkcLIATG--  308 (659)
T KOG1346|consen  250 IFFEPDGFFVSPEDLPK-----AVNGGVAV--LRGRKVVKIDEED----KKVILNDG-------TT-IGYDKCLIATG--  308 (659)
T ss_pred             eEecCCcceeChhHCcc-----cccCceEE--EeccceEEeeccc----CeEEecCC-------cE-eehhheeeecC--
Confidence                0012233333222     12223333  6667777776655    56788776       67 99999999999  


Q ss_pred             CCCCCCC-CCCc-cccccCCCCCccEEecc-cCCCCC--CCCCCeEEEECCCccHHHHHHHHhhc----cCceEEEeecC
Q 022090          149 TNPFTPD-IRGL-CSFCSSATGTGEVIHST-QYKNGK--PYGGKNVLVVGSGNSGMEIALDLANH----AAKTSLVVRSP  219 (303)
Q Consensus       149 ~~p~~p~-~~g~-~~~~~~~~~~g~~~~~~-~~~~~~--~~~~~~v~ViG~G~~g~e~a~~l~~~----g~~vt~~~r~~  219 (303)
                      .+|...+ |... +..    +.+-.++|.. +|..-.  ....+.|.|||+|+.|-|+|+.|.+.    |.+|+.+.-..
T Consensus       309 ~~Pk~l~~~~~A~~ev----k~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek  384 (659)
T KOG1346|consen  309 VRPKKLQVFEEASEEV----KQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK  384 (659)
T ss_pred             cCcccchhhhhcCHHh----hhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc
Confidence            6665433 2111 111    0011233332 222111  11237899999999999999999874    55776664443

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.37  E-value=2.6e-06  Score=71.99  Aligned_cols=76  Identities=17%  Similarity=0.209  Sum_probs=54.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCC--ceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYD--RLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      ++|++|||||.+|+.+|..|+++|.+|.|+|+++++||.......+  ++.++.-.        |    .-...+...+.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYG--------p----HIFHT~~~~Vw   68 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYG--------P----HIFHTDNKRVW   68 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeecc--------C----ceeecCchHHH
Confidence            3799999999999999999999999999999999999976544222  22222100        0    01123456888


Q ss_pred             HHHHHHHHHc
Q 022090           85 EHLDHYVSHF   94 (303)
Q Consensus        85 ~~l~~~~~~~   94 (303)
                      +|+..+.+-.
T Consensus        69 dyv~~F~e~~   78 (374)
T COG0562          69 DYVNQFTEFN   78 (374)
T ss_pred             HHHhhhhhhh
Confidence            9988887644

>PLN02268 probable polyamine oxidase

Probab=98.36  E-value=5e-07  Score=82.63  Aligned_cols=38  Identities=29%  Similarity=0.430  Sum_probs=35.8

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      ++|+|||||++||+||+.|.+.|++|+|+|+++.+||-
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr   38 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR   38 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence            47999999999999999999999999999999999983

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.35  E-value=8.3e-06  Score=77.68  Aligned_cols=110  Identities=18%  Similarity=0.133  Sum_probs=73.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||||+.|+..|..|.+.|.+|+++|+.+.+.                      +.           -..++.++
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll----------------------~~-----------~d~eis~~  358 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL----------------------PL-----------LDADVAKY  358 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc----------------------cc-----------CCHHHHHH
Confidence            4689999999999999999999999999999987532                      00           01245566


Q ss_pred             HHHHH-HHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecC---CCC-----ceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYV-SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL---SPG-----REIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~-~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~---~~~-----~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+.. +..++..  ++++.|.+++..+......+...+..   ..+     .+..+ +.+|.|++|+|  ..|+..
T Consensus       359 l~~~ll~~~GV~I--~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~-i~aD~VlvAtG--r~Pnt~  430 (659)
T PTZ00153        359 FERVFLKSKPVRV--HLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKE-TYVDSCLVATG--RKPNTN  430 (659)
T ss_pred             HHHHHhhcCCcEE--EcCCEEEEEEecCCceEEEEEEeccccccccccccccccceE-EEcCEEEEEEC--cccCCc
Confidence            66643 4566655  89999999976542222444433211   000     01137 89999999999  556543

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.33  E-value=1.2e-05  Score=76.23  Aligned_cols=33  Identities=24%  Similarity=0.463  Sum_probs=30.5

Q ss_pred             cEEEECCcHHHHHHHHHHh----hCCCCeEEEecCCC
Q 022090            9 EVIMVGAGTSGLATAACLS----LQSIPYVILERENC   41 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~----~~g~~v~iie~~~~   41 (303)
                      ||+|||+|.|||+||..++    +.|.+|+|+||...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence            7999999999999999998    67999999999764

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.33  E-value=1e-06  Score=81.93  Aligned_cols=39  Identities=28%  Similarity=0.407  Sum_probs=36.8

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      .||+|||||++||++|..|+++|++|+|+|+++.+||..
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~   40 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCA   40 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence            589999999999999999999999999999999999843

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.33  E-value=8.1e-06  Score=76.27  Aligned_cols=40  Identities=18%  Similarity=0.305  Sum_probs=35.9

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      ...+||+|||||.|||.||..+++.|.+|+|+||....+|
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg   43 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG   43 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence            4568999999999999999999999999999999875543

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.33  E-value=9.6e-07  Score=81.41  Aligned_cols=39  Identities=23%  Similarity=0.417  Sum_probs=36.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC----CCCeEEEecCCCCCCc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASI   45 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~----g~~v~iie~~~~~gg~   45 (303)
                      ++||+|||||++||++|..|.++    |++|+|+|+++.+||.
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~   44 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK   44 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence            36999999999999999999999    9999999999999884

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PLN02676 polyamine oxidase

Probab=98.33  E-value=1.1e-06  Score=81.16  Aligned_cols=47  Identities=34%  Similarity=0.478  Sum_probs=41.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCCCCCccCcCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYD   52 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~   52 (303)
                      ..+||+|||||++||++|..|+++|. +|+|+|+++.+||.+....+.
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~   72 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFA   72 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCC
Confidence            46799999999999999999999998 699999999999976654343

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.32  E-value=7.7e-06  Score=76.27  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=30.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ..+||+|||+|.||++||..++  +.+|+|+||...
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            4589999999999999999997  569999999875

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=6.7e-07  Score=80.49  Aligned_cols=37  Identities=27%  Similarity=0.355  Sum_probs=35.9

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      ++|+|+|||+|||+||..|+++|++|+|+|+++.+||
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG   37 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG   37 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence            4799999999999999999999999999999999998

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.32  E-value=2.8e-05  Score=77.34  Aligned_cols=35  Identities=23%  Similarity=0.467  Sum_probs=32.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .+||+|||+|.+||++|..+++.|.+|+|+||...
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            57999999999999999999999999999999764

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.32  E-value=7.2e-06  Score=74.96  Aligned_cols=61  Identities=13%  Similarity=0.117  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeE-EEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        80 ~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      ...+.+.|.+.+++.++++  +++++|+++..+++.+.. .|...+.      ... +.++.||+|||.++
T Consensus       122 g~~l~~~L~~~a~~~Gv~i--~~~~~v~~l~~~~~~g~v~gv~~~~~------~~~-i~ak~VIlAtGG~~  183 (432)
T TIGR02485       122 GKALTNALYSSAERLGVEI--RYGIAVDRIPPEAFDGAHDGPLTTVG------THR-ITTQALVLAAGGLG  183 (432)
T ss_pred             HHHHHHHHHHHHHHcCCEE--EeCCEEEEEEecCCCCeEEEEEEcCC------cEE-EEcCEEEEcCCCcc
Confidence            4567888888888888666  999999999765312322 1232221      146 89999999999654

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PLN02546 glutathione reductase

Probab=98.30  E-value=1.1e-05  Score=75.58  Aligned_cols=101  Identities=14%  Similarity=0.103  Sum_probs=73.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|+.|+.+|..|...|.+|+++++.+.+..                      .+           ..++.++
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~----------------------~~-----------d~~~~~~  298 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR----------------------GF-----------DEEVRDF  298 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc----------------------cc-----------CHHHHHH
Confidence            46899999999999999999999999999998764310                      00           1256677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+..++.+++.  ++++.+.++...+ ++...+...++       .. ..+|.||+|+|  ..|+.
T Consensus       299 l~~~L~~~GV~i--~~~~~v~~i~~~~-~g~v~v~~~~g-------~~-~~~D~Viva~G--~~Pnt  352 (558)
T PLN02546        299 VAEQMSLRGIEF--HTEESPQAIIKSA-DGSLSLKTNKG-------TV-EGFSHVMFATG--RKPNT  352 (558)
T ss_pred             HHHHHHHCCcEE--EeCCEEEEEEEcC-CCEEEEEECCe-------EE-EecCEEEEeec--cccCC
Confidence            777777778766  8899999987643 23344443321       33 45899999999  55554

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.29  E-value=1.8e-05  Score=72.11  Aligned_cols=91  Identities=18%  Similarity=0.216  Sum_probs=68.4

Q ss_pred             CcEEEECCcHHHHHHHHHHhh--------------CCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSL--------------QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSS   73 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~--------------~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (303)
                      .+|+|||||+.|+.+|..|++              .+.+|+++++.+.+.                      +.      
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll----------------------~~------  225 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL----------------------GS------  225 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc----------------------cc------
Confidence            389999999999999999876              368899999876431                      00      


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           74 YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        74 ~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                         +  ...+.+++.+..++.+++.  ++++.|++++.+      .|.+.++       ++ +++|.+|.|+|.
T Consensus       226 ---~--~~~~~~~~~~~L~~~gV~v--~~~~~v~~v~~~------~v~~~~g-------~~-i~~d~vi~~~G~  278 (424)
T PTZ00318        226 ---F--DQALRKYGQRRLRRLGVDI--RTKTAVKEVLDK------EVVLKDG-------EV-IPTGLVVWSTGV  278 (424)
T ss_pred             ---C--CHHHHHHHHHHHHHCCCEE--EeCCeEEEEeCC------EEEECCC-------CE-EEccEEEEccCC
Confidence               0  1256677788888888766  889999888632      2555554       56 899999999994

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.28  E-value=1.1e-06  Score=81.99  Aligned_cols=37  Identities=30%  Similarity=0.442  Sum_probs=35.1

Q ss_pred             EEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090           10 VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus        10 vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      |+|||||++||+||..|++.|++|+|+|+++.+||..
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~   37 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRA   37 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCce
Confidence            6899999999999999999999999999999999853

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR02730 carot_isom carotene isomerase

Probab=98.28  E-value=1.3e-06  Score=81.15  Aligned_cols=40  Identities=28%  Similarity=0.387  Sum_probs=37.3

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~   47 (303)
                      +||+|||||++||++|..|+++|++|+|+|+++.+||+..
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   40 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAG   40 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence            5899999999999999999999999999999999998543

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.27  E-value=1.5e-06  Score=77.15  Aligned_cols=39  Identities=28%  Similarity=0.414  Sum_probs=36.6

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      +||+|||||++|+++|..|++.|.+|+|+|+++.+||..
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~   40 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNC   40 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCce
Confidence            699999999999999999999999999999999999853

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.26  E-value=1.4e-06  Score=77.40  Aligned_cols=39  Identities=28%  Similarity=0.464  Sum_probs=35.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCCCCCc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASI   45 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~~gg~   45 (303)
                      ..+|+|||||.|||+||.+|.+.|+ +++|+|..+++||-
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR   60 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR   60 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence            4689999999999999999998765 89999999999983

>PLN02568 polyamine oxidase

Probab=98.23  E-value=2e-06  Score=80.27  Aligned_cols=41  Identities=22%  Similarity=0.357  Sum_probs=37.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC-----CCeEEEecCCCCCCccC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS-----IPYVILERENCYASIWK   47 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g-----~~v~iie~~~~~gg~w~   47 (303)
                      .+||+|||||++||++|..|.+.|     ++|+|+|+++.+||.+.
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~   50 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRIN   50 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEE
Confidence            479999999999999999999887     89999999999999654

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.22  E-value=1.7e-06  Score=77.93  Aligned_cols=39  Identities=18%  Similarity=0.450  Sum_probs=36.5

Q ss_pred             cEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCCCccC
Q 022090            9 EVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWK   47 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~   47 (303)
                      +|+|||||++||++|+.|++++  .+++|||+++.+||...
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~   42 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR   42 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence            6999999999999999999999  89999999999999544

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.22  E-value=1.9e-05  Score=73.84  Aligned_cols=101  Identities=19%  Similarity=0.144  Sum_probs=68.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||||+.|+.+|..|+..+.+|+++++.+.+.                                   .    ...
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-----------------------------------~----~~~  392 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-----------------------------------A----DKV  392 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-----------------------------------h----hHH
Confidence            4689999999999999999999999999998765321                                   0    012


Q ss_pred             HHHHHHH-cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +...++. .++..  ++++.++++..++ +....|.+.++.++  +..+ +.+|.|++|+|  ..|+..
T Consensus       393 l~~~l~~~~gV~i--~~~~~v~~i~~~~-~~v~~v~~~~~~~~--~~~~-i~~D~vi~a~G--~~Pn~~  453 (515)
T TIGR03140       393 LQDKLKSLPNVDI--LTSAQTTEIVGDG-DKVTGIRYQDRNSG--EEKQ-LDLDGVFVQIG--LVPNTE  453 (515)
T ss_pred             HHHHHhcCCCCEE--EECCeeEEEEcCC-CEEEEEEEEECCCC--cEEE-EEcCEEEEEeC--CcCCch
Confidence            3333333 46554  8999998886543 12223555543222  2257 89999999999  555543

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.21  E-value=9e-06  Score=72.18  Aligned_cols=34  Identities=21%  Similarity=0.405  Sum_probs=31.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~   39 (303)
                      ..+||+|||||.||+.+|...++.|.+.+++..+
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            4689999999999999999999999999888764

>PRK10262 thioredoxin reductase; Provisional

Probab=98.21  E-value=2.5e-05  Score=68.53  Aligned_cols=105  Identities=23%  Similarity=0.278  Sum_probs=71.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|..|+.+|..|++.+.+|+++++.+.+.                                   ....+.+.
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~~  190 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKR  190 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHHH
Confidence            4689999999999999999999999999999875321                                   00134455


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+..+..+++.  ++++.++++..++ .+.-.|.+.+...++ +..+ +.+|.||+|+|  ..|+.
T Consensus       191 ~~~~l~~~gV~i--~~~~~v~~v~~~~-~~~~~v~~~~~~~~~-~~~~-i~~D~vv~a~G--~~p~~  250 (321)
T PRK10262        191 LMDKVENGNIIL--HTNRTLEEVTGDQ-MGVTGVRLRDTQNSD-NIES-LDVAGLFVAIG--HSPNT  250 (321)
T ss_pred             HHhhccCCCeEE--EeCCEEEEEEcCC-ccEEEEEEEEcCCCC-eEEE-EECCEEEEEeC--CccCh
Confidence            555556666555  8899999987543 222235444321100 2257 89999999999  55544

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.19  E-value=1.9e-06  Score=79.52  Aligned_cols=37  Identities=24%  Similarity=0.510  Sum_probs=34.2

Q ss_pred             CcEEEECCcHHHHHHHHHHhhC------CCCeEEEecCCCCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQ------SIPYVILERENCYAS   44 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~------g~~v~iie~~~~~gg   44 (303)
                      ++|+|||||++||++|..|.+.      |.+|+|+|+++.+||
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG   44 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG   44 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence            4799999999999999999986      379999999999998

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.18  E-value=2.3e-05  Score=67.73  Aligned_cols=98  Identities=23%  Similarity=0.255  Sum_probs=65.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|.+|+.+|..|++.+.+|+++++.+...                                   .    ...
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-----------------------------------~----~~~  181 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-----------------------------------A----EKI  181 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-----------------------------------c----CHH
Confidence            4689999999999999999999999999999865310                                   0    011


Q ss_pred             HHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+.++.. +++.  ++++.+.++..++  ....+.+.+...+  +..+ +.+|.||+|+|  ..|+
T Consensus       182 ~~~~l~~~~gv~~--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~~~  239 (300)
T TIGR01292       182 LLDRLRKNPNIEF--LWNSTVKEIVGDN--KVEGVKIKNTVTG--EEEE-LKVDGVFIAIG--HEPN  239 (300)
T ss_pred             HHHHHHhCCCeEE--EeccEEEEEEccC--cEEEEEEEecCCC--ceEE-EEccEEEEeeC--CCCC
Confidence            22333333 6554  8889999987543  3233444332111  2267 89999999999  4444

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.13  E-value=2.9e-06  Score=77.20  Aligned_cols=42  Identities=19%  Similarity=0.277  Sum_probs=39.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~   47 (303)
                      +.+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|.
T Consensus         3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a   44 (443)
T PTZ00363          3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA   44 (443)
T ss_pred             CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence            468999999999999999999999999999999999999765

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.13  E-value=3.8e-06  Score=74.48  Aligned_cols=43  Identities=30%  Similarity=0.364  Sum_probs=38.9

Q ss_pred             CCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            2 KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         2 ~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      ..+.+.+||+|+|+|.+||++|..|.+.|++|+|+|.++.+||
T Consensus         2 ~~p~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG   44 (450)
T COG1231           2 TLPPKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG   44 (450)
T ss_pred             CCCCCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence            3345678999999999999999999999999999999998887

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.13  E-value=3.3e-06  Score=77.69  Aligned_cols=37  Identities=27%  Similarity=0.401  Sum_probs=35.0

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      +|+|||||++||++|..|.++|++|+|+|+++.+||.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~   37 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGK   37 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Confidence            5899999999999999999999999999999988883

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.10  E-value=4e-05  Score=71.69  Aligned_cols=100  Identities=18%  Similarity=0.118  Sum_probs=68.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .++|+|||||..|+.+|..|+..+.+|+++++.+.+.                               .        ..+
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-------------------------------~--------~~~  391 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-------------------------------A--------DQV  391 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-------------------------------c--------cHH
Confidence            4689999999999999999999999999998876421                               0        012


Q ss_pred             HHHHHHH-cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.... .++..  ++++.++++..++ +..-.+.+.+..++  +..+ +.+|.|++|+|  ..|+.
T Consensus       392 l~~~l~~~~gI~i--~~~~~v~~i~~~~-g~v~~v~~~~~~~g--~~~~-i~~D~v~~~~G--~~p~~  451 (517)
T PRK15317        392 LQDKLRSLPNVTI--ITNAQTTEVTGDG-DKVTGLTYKDRTTG--EEHH-LELEGVFVQIG--LVPNT  451 (517)
T ss_pred             HHHHHhcCCCcEE--EECcEEEEEEcCC-CcEEEEEEEECCCC--cEEE-EEcCEEEEeEC--CccCc
Confidence            3333332 36554  9999999997653 22223455443222  3357 89999999999  55543

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.09  E-value=9.4e-06  Score=72.65  Aligned_cols=35  Identities=26%  Similarity=0.332  Sum_probs=32.3

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~   42 (303)
                      .||+|||||++|+.+|..|++.|++|+|+|+.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            59999999999999999999999999999976544

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.06  E-value=3e-05  Score=68.39  Aligned_cols=132  Identities=17%  Similarity=0.120  Sum_probs=65.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCCCCCCccCcCCCCce--EEecCcccccCCCCCCC-------CC-
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRL--RLHLAKQFCQLPHLPFP-------SS-   73 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~-   73 (303)
                      ..++|+|||||.++..++..|.+.+.  +|+++-|+...--.-    +..+  ..-.|.....|...+..       .. 
T Consensus       189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d----~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~  264 (341)
T PF13434_consen  189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMD----DSPFVNEIFSPEYVDYFYSLPDEERRELLREQR  264 (341)
T ss_dssp             --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB--------CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTG
T ss_pred             CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCc----cccchhhhcCchhhhhhhcCCHHHHHHHHHHhH
Confidence            45789999999999999999999875  789998876421000    0000  00000000000000000       00 


Q ss_pred             --CCCCCCHHHHHHHH-HH-HHHHc--CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090           74 --YPMFVSRAQFIEHL-DH-YVSHF--NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (303)
Q Consensus        74 --~~~~~~~~~l~~~l-~~-~~~~~--~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG  146 (303)
                        ...-.+. ++.+.+ +. |.++.  .-...++.+++|++++..+ ++.|.+.+.+..++  +..+ +.+|.||+|||
T Consensus       265 ~~ny~~i~~-~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~-~~~~~l~~~~~~~~--~~~~-~~~D~VilATG  338 (341)
T PF13434_consen  265 HTNYGGIDP-DLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDG-DGGVRLTLRHRQTG--EEET-LEVDAVILATG  338 (341)
T ss_dssp             GGTSSEB-H-HHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEEEEEEETTT----EEE-EEESEEEE---
T ss_pred             hhcCCCCCH-HHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECC-CCEEEEEEEECCCC--CeEE-EecCEEEEcCC
Confidence              0001112 222211 11 11111  1234567899999999887 44899999886554  4567 89999999999

>PLN02529 lysine-specific histone demethylase 1

Probab=98.06  E-value=6.4e-06  Score=79.00  Aligned_cols=40  Identities=38%  Similarity=0.383  Sum_probs=37.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      ..++|+|||||++|+++|..|+++|++|+|+|+++.+||.
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~  198 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR  198 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence            4579999999999999999999999999999999888874

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.05  E-value=6.4e-06  Score=74.15  Aligned_cols=40  Identities=15%  Similarity=0.335  Sum_probs=36.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      ..+||+|||||..|.-||..++-+|.++.++|+++...|+
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT  105 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT  105 (680)
T ss_pred             CcccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence            3589999999999999999999999999999999866664

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=98.05  E-value=4.4e-05  Score=68.08  Aligned_cols=107  Identities=20%  Similarity=0.227  Sum_probs=83.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ...|+++|+|..|+.+|..|...+.+|+++++.+..        .++                        .-...+.+.
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~--------~~~------------------------lf~~~i~~~  260 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL--------LPR------------------------LFGPSIGQF  260 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc--------hhh------------------------hhhHHHHHH
Confidence            457999999999999999999999999999988742        100                        112356666


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIR  157 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~  157 (303)
                      ...+.+..++..  +.++.+.+++.++.+....|.+.++       .+ +.+|.||+++|  ..|+.+.+.
T Consensus       261 ~~~y~e~kgVk~--~~~t~~s~l~~~~~Gev~~V~l~dg-------~~-l~adlvv~GiG--~~p~t~~~~  319 (478)
T KOG1336|consen  261 YEDYYENKGVKF--YLGTVVSSLEGNSDGEVSEVKLKDG-------KT-LEADLVVVGIG--IKPNTSFLE  319 (478)
T ss_pred             HHHHHHhcCeEE--EEecceeecccCCCCcEEEEEeccC-------CE-eccCeEEEeec--ccccccccc
Confidence            777777778766  8999999998877555566777765       67 89999999999  777777655

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.04  E-value=6.8e-05  Score=67.28  Aligned_cols=33  Identities=24%  Similarity=0.468  Sum_probs=30.8

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~   42 (303)
                      ||+|||+|.|||++|..|.+. ++|+|+.|.+..
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence            999999999999999999998 999999998744

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.01  E-value=6.4e-06  Score=70.37  Aligned_cols=44  Identities=23%  Similarity=0.347  Sum_probs=37.5

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      |..+.+..+|+|||+|++||+||..|.++ .+|++||.+..+||-
T Consensus         2 ~~~~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh   45 (447)
T COG2907           2 MNQPHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH   45 (447)
T ss_pred             CCCCCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence            33445678999999999999999988875 799999999999983

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.00  E-value=7.6e-06  Score=75.58  Aligned_cols=36  Identities=33%  Similarity=0.366  Sum_probs=34.6

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      +|+|||||++|+++|..|.+.|++|+|+|+++.+||
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG   36 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG   36 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence            589999999999999999999999999999999887

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.00  E-value=0.00012  Score=61.12  Aligned_cols=39  Identities=23%  Similarity=0.419  Sum_probs=34.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCC------CCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQS------IPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g------~~v~iie~~~~~gg   44 (303)
                      ..++|+|+|||+.|+++|+.|.+++      .+++|||+....||
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g   53 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG   53 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence            4579999999999999999999996      78999999876654

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=97.98  E-value=3.9e-05  Score=70.89  Aligned_cols=61  Identities=13%  Similarity=0.051  Sum_probs=48.3

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        77 ~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      ..+...++..+...++++|..+  ..++.|++|.... ++.|-|.+..+        . +++.++|.|+|.+.
T Consensus       183 ~~DP~~lC~ala~~A~~~GA~v--iE~cpV~~i~~~~-~~~~gVeT~~G--------~-iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  183 VMDPAGLCQALARAASALGALV--IENCPVTGLHVET-DKFGGVETPHG--------S-IETECVVNAAGVWA  243 (856)
T ss_pred             ccCHHHHHHHHHHHHHhcCcEE--EecCCcceEEeec-CCccceeccCc--------c-eecceEEechhHHH
Confidence            3456788889999999999776  9999999998765 45566777663        4 89999999999644

>PLN02487 zeta-carotene desaturase

Probab=97.97  E-value=1.2e-05  Score=75.40  Aligned_cols=40  Identities=28%  Similarity=0.284  Sum_probs=36.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      +++|+|||||++|+++|..|.+.|++|+|+|+.+..||.+
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~  114 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKV  114 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCce
Confidence            3599999999999999999999999999999999888743

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.95  E-value=1.3e-05  Score=77.36  Aligned_cols=40  Identities=30%  Similarity=0.351  Sum_probs=37.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      ..++|+|||||++|+++|..|.+.|++|+|+|+++.+||.
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr  276 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR  276 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence            3579999999999999999999999999999999988874

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=97.94  E-value=4.5e-05  Score=64.55  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=30.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhC-CC-CeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~-~v~iie~~~   40 (303)
                      .+++|+|+|||.+|+++|.++.++ +. +|.|+|..+
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e   74 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE   74 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence            578999999999999999999876 54 899999865

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.91  E-value=1.6e-05  Score=74.91  Aligned_cols=40  Identities=35%  Similarity=0.482  Sum_probs=36.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC--CCCCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--CYASI   45 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~--~~gg~   45 (303)
                      ..+||+|||+|.+||+||..+++.|.+|+|+||.+  ..||.
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~   44 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ   44 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence            35899999999999999999999999999999998  56663

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.89  E-value=5.6e-05  Score=64.61  Aligned_cols=35  Identities=31%  Similarity=0.560  Sum_probs=32.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhC----CCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQ----SIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~----g~~v~iie~~~   40 (303)
                      .++||+|||||..|.+.|..|+++    |++|+++|+++
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd  123 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD  123 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence            468999999999999999999875    79999999987

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.88  E-value=0.00013  Score=61.82  Aligned_cols=38  Identities=39%  Similarity=0.626  Sum_probs=34.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA   43 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~g   43 (303)
                      ..+|+||||||+.|++.|++|.-+  +.+|.++|+...++
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la   86 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA   86 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence            468999999999999999999877  88999999988665

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.88  E-value=0.00013  Score=64.74  Aligned_cols=59  Identities=19%  Similarity=0.403  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        81 ~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      ..+...+.++++.+|.++  +|+++|+.+...+. ....|.+.++       .+ +.+|+||+|.|+.++
T Consensus       173 ~~vvkni~~~l~~~G~ei--~f~t~VeDi~~~~~-~~~~v~~~~g-------~~-i~~~~vvlA~Grsg~  231 (486)
T COG2509         173 PKVVKNIREYLESLGGEI--RFNTEVEDIEIEDN-EVLGVKLTKG-------EE-IEADYVVLAPGRSGR  231 (486)
T ss_pred             HHHHHHHHHHHHhcCcEE--EeeeEEEEEEecCC-ceEEEEccCC-------cE-EecCEEEEccCcchH
Confidence            567777888888888666  99999999998762 2345666554       57 999999999997443

>PLN02612 phytoene desaturase

Probab=97.87  E-value=2.1e-05  Score=74.29  Aligned_cols=40  Identities=28%  Similarity=0.425  Sum_probs=36.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      .+++|+|||||++|+++|..|.++|++|+++|+++.+||.
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~  131 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK  131 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCc
Confidence            3578999999999999999999999999999999888873

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.86  E-value=0.00024  Score=65.29  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=31.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .++|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus       272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            4689999999999999999999999999998865

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.85  E-value=0.00015  Score=64.66  Aligned_cols=91  Identities=13%  Similarity=0.145  Sum_probs=63.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhh----CC--CCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCH
Q 022090            7 GVEVIMVGAGTSGLATAACLSL----QS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSR   80 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~----~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (303)
                      ..+|+|||+|++|+.+|..|++    .|  .+|+++. .+.+.                      +.           ..
T Consensus       145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~l----------------------~~-----------~~  190 (364)
T TIGR03169       145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLL----------------------PG-----------FP  190 (364)
T ss_pred             CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCccc----------------------cc-----------CC
Confidence            3589999999999999999975    34  4788883 22110                      00           01


Q ss_pred             HHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        81 ~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      ..+...+.+.+++.+++.  +.++.+++++..      .+.+.++       .+ +.+|.||+|+|.
T Consensus       191 ~~~~~~~~~~l~~~gV~v--~~~~~v~~i~~~------~v~~~~g-------~~-i~~D~vi~a~G~  241 (364)
T TIGR03169       191 AKVRRLVLRLLARRGIEV--HEGAPVTRGPDG------ALILADG-------RT-LPADAILWATGA  241 (364)
T ss_pred             HHHHHHHHHHHHHCCCEE--EeCCeeEEEcCC------eEEeCCC-------CE-EecCEEEEccCC
Confidence            245667777778888766  888889887422      3555443       56 899999999994

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK12831 putative oxidoreductase; Provisional

Probab=97.81  E-value=0.00035  Score=64.44  Aligned_cols=35  Identities=23%  Similarity=0.286  Sum_probs=31.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..++|+|||+|..|+-+|..|.+.|.+|+++.+..
T Consensus       280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            34699999999999999999999999999998754

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.80  E-value=0.0002  Score=61.18  Aligned_cols=40  Identities=35%  Similarity=0.449  Sum_probs=35.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC--CCCCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--CYASI   45 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~--~~gg~   45 (303)
                      ..+||+|||+|.+||.+|..|++.|.+|+|+|+..  .+||+
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ   45 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ   45 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence            35799999999999999999999999999999753  56663

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.79  E-value=2.9e-05  Score=72.21  Aligned_cols=40  Identities=15%  Similarity=0.150  Sum_probs=37.7

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~   47 (303)
                      +||+|||+|++|+.+|..|++.|++|+++|+....|+.|.
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~   40 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI   40 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence            5999999999999999999999999999999998888873

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.79  E-value=0.00034  Score=62.19  Aligned_cols=33  Identities=24%  Similarity=0.296  Sum_probs=30.1

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCC-eEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIP-YVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~~   40 (303)
                      .+|+|||+|..|+.+|..|.+.|.+ |+++++.+
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            5899999999999999999999997 99998764

>PLN03000 amine oxidase

Probab=97.77  E-value=4.1e-05  Score=74.26  Aligned_cols=43  Identities=30%  Similarity=0.297  Sum_probs=39.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~   48 (303)
                      ...+|+|||||++|+++|..|.+.|++|+|+|+++.+||.+..
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T  225 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT  225 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence            3579999999999999999999999999999999999995543

>PLN02976 amine oxidase

Probab=97.72  E-value=4.9e-05  Score=76.66  Aligned_cols=43  Identities=28%  Similarity=0.367  Sum_probs=39.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~   48 (303)
                      ..++|+|||||++|+++|..|.+.|++|+|+|+++.+||.|..
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t  734 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT  734 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence            3579999999999999999999999999999999999997654

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.72  E-value=0.00041  Score=65.48  Aligned_cols=35  Identities=23%  Similarity=0.391  Sum_probs=32.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ..+|+|||||+.|+.+|..|.+.|.+|+++++.+.
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~  177 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD  177 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence            46899999999999999999999999999998763

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.71  E-value=6.3e-05  Score=69.79  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=31.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .++|+|||+|.+|+++|..|+++|++|+++|+.+
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999999999999999999999999764

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.71  E-value=3.4e-05  Score=66.80  Aligned_cols=35  Identities=31%  Similarity=0.450  Sum_probs=30.0

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCC-CCeEEEecCCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQS-IPYVILERENCY   42 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~~~   42 (303)
                      ||++|||+|++|+.+|.+|++.+ .+|+|+|+....
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~   36 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY   36 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence            69999999999999999999997 699999997743

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.70  E-value=5.3e-05  Score=66.61  Aligned_cols=41  Identities=27%  Similarity=0.345  Sum_probs=35.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCC--eEEEecCCCCCCcc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIP--YVILERENCYASIW   46 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~--v~iie~~~~~gg~w   46 (303)
                      ...+|+|+|||++||++|+.|++++.+  ++++|+.+.+||..
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi   52 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI   52 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence            357999999999999999999999765  56699999999843

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.65  E-value=0.0019  Score=63.35  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=31.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCC-eEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~~   40 (303)
                      .++|+|||||..|+-+|..|.+.|.+ |+++++.+
T Consensus       570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            46899999999999999999999997 99998764

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=97.63  E-value=0.0012  Score=58.12  Aligned_cols=38  Identities=32%  Similarity=0.453  Sum_probs=32.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhC----CCCeEEEecC--CCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQ----SIPYVILERE--NCYA   43 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~----g~~v~iie~~--~~~g   43 (303)
                      ..+||+|+|||+.|+++|..|...    ..++.++|..  +.++
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~   78 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLG   78 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccc
Confidence            478999999999999999999865    4689999987  4444

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.57  E-value=0.0012  Score=60.94  Aligned_cols=101  Identities=14%  Similarity=0.152  Sum_probs=64.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..+|+|||+|..|+.+|..|.+.|. +|+++++.+..                        .+  +.       ...   
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~------------------------~~--~~-------~~~---  316 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE------------------------EM--PA-------SEE---  316 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc------------------------cC--CC-------CHH---
Confidence            4689999999999999999999998 89999876421                        00  00       011   


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEee---------c-----CCCCceeEEEEeeCEEEEccCCCCCC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN---------L-----LSPGREIEEYYSGRFLVVASGETTNP  151 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~---------~-----~~~~~~~~~~~~ad~vIlAtG~~~~p  151 (303)
                       ..+.+++.|++.  ++++.+..+..++ .+.-.|.+..         +     ..+  ...+ +.+|.||+|+|  ..|
T Consensus       317 -~~~~~~~~GV~i--~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~~~g--~~~~-i~~D~vi~a~G--~~p  387 (457)
T PRK11749        317 -EVEHAKEEGVEF--EWLAAPVEILGDE-GRVTGVEFVRMELGEPDASGRRRVPIEG--SEFT-LPADLVIKAIG--QTP  387 (457)
T ss_pred             -HHHHHHHCCCEE--EecCCcEEEEecC-CceEEEEEEEEEecCcCCCCCcccCCCC--ceEE-EECCEEEECcc--CCC
Confidence             233445667665  8888888886543 1111122211         0     001  2257 89999999999  555


Q ss_pred             C
Q 022090          152 F  152 (303)
Q Consensus       152 ~  152 (303)
                      +
T Consensus       388 ~  388 (457)
T PRK11749        388 N  388 (457)
T ss_pred             C
Confidence            4

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.54  E-value=0.00011  Score=62.48  Aligned_cols=34  Identities=24%  Similarity=0.453  Sum_probs=31.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ++||+|||||.+|++|+..|.++|.++.|+.+..
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ   35 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ   35 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence            4799999999999999999999999999998754

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.52  E-value=0.0021  Score=58.24  Aligned_cols=40  Identities=25%  Similarity=0.258  Sum_probs=34.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC----CCCeEEEecCCCCCCcc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIW   46 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~----g~~v~iie~~~~~gg~w   46 (303)
                      .++.=|||+|+|+|++|..|.+.    |-+|+|+|+.+..||..
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl   45 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL   45 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence            35788999999999999999876    56999999999888744

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.51  E-value=0.0056  Score=56.60  Aligned_cols=34  Identities=15%  Similarity=0.260  Sum_probs=30.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      .++|+|||+|..|+.+|..+.+.|. +|+++++.+
T Consensus       282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~  316 (467)
T TIGR01318       282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD  316 (467)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence            4689999999999999999999996 799998865

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.49  E-value=0.00014  Score=64.11  Aligned_cols=102  Identities=23%  Similarity=0.263  Sum_probs=69.4

Q ss_pred             cEEEECCcHHHHHHHHHHhhC--------------CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQ--------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSY   74 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~--------------g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (303)
                      .++||||||.|+..|.+|++.              .++|+++|..+.+=                      +.       
T Consensus       220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL----------------------~m-------  270 (491)
T KOG2495|consen  220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL----------------------NM-------  270 (491)
T ss_pred             EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH----------------------HH-------
Confidence            589999999999999999763              35789998877421                      00       


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           75 PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        75 ~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                          -.+.+.+|.++...+.++..  +.++.|..+..+.    ..+...++     +..+ +.|-.+|-|||...+|..-
T Consensus       271 ----Fdkrl~~yae~~f~~~~I~~--~~~t~Vk~V~~~~----I~~~~~~g-----~~~~-iPYG~lVWatG~~~rp~~k  334 (491)
T KOG2495|consen  271 ----FDKRLVEYAENQFVRDGIDL--DTGTMVKKVTEKT----IHAKTKDG-----EIEE-IPYGLLVWATGNGPRPVIK  334 (491)
T ss_pred             ----HHHHHHHHHHHHhhhcccee--ecccEEEeecCcE----EEEEcCCC-----ceee-ecceEEEecCCCCCchhhh
Confidence                01245555555555667666  8888888885543    33333332     4467 8999999999976665544


Q ss_pred             C
Q 022090          155 D  155 (303)
Q Consensus       155 ~  155 (303)
                      .
T Consensus       335 ~  335 (491)
T KOG2495|consen  335 D  335 (491)
T ss_pred             h
Confidence            3

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.49  E-value=0.00015  Score=65.67  Aligned_cols=34  Identities=18%  Similarity=0.394  Sum_probs=32.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ++||+|||+|++|+++|..|++.|.+|+++|+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            4799999999999999999999999999999874

>PRK02106 choline dehydrogenase; Validated

Probab=97.45  E-value=0.00017  Score=68.25  Aligned_cols=35  Identities=29%  Similarity=0.457  Sum_probs=32.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhh-CCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSL-QSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~-~g~~v~iie~~~   40 (303)
                      ..+|++|||+|.+|+.+|.+|++ .|.+|+|+|+..
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            45899999999999999999999 799999999985

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.40  E-value=0.0024  Score=56.21  Aligned_cols=52  Identities=13%  Similarity=0.151  Sum_probs=37.9

Q ss_pred             ceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCC
Q 022090           98 PSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD  155 (303)
Q Consensus        98 ~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~  155 (303)
                      ++++-+++|.+++...+ +.+.+.+....++  +..+ +++|.||+|||-  ...+|.
T Consensus       293 v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~~--~~~t-~~~D~vIlATGY--~~~~P~  344 (436)
T COG3486         293 VRLLSLSEVQSVEPAGD-GRYRLTLRHHETG--ELET-VETDAVILATGY--RRAVPS  344 (436)
T ss_pred             eeeccccceeeeecCCC-ceEEEEEeeccCC--CceE-EEeeEEEEeccc--ccCCch
Confidence            44577889999988763 5588888776554  5577 899999999994  344554

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.36  E-value=0.0018  Score=65.28  Aligned_cols=96  Identities=15%  Similarity=0.107  Sum_probs=65.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..+|+|||+|+.|+.+|..|.+.|. .|+|+|..+.+                                         ..
T Consensus       317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----------------------------------------~~  355 (985)
T TIGR01372       317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----------------------------------------SP  355 (985)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----------------------------------------hH
Confidence            4689999999999999999999996 57888875421                                         11


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      .+.+.+++.++..  +.++.++.+..++  ..-.|.+....+   ...+ +.+|.|+++.|  ..|+.
T Consensus       356 ~l~~~L~~~GV~i--~~~~~v~~i~g~~--~v~~V~l~~~~g---~~~~-i~~D~V~va~G--~~Pnt  413 (985)
T TIGR01372       356 EARAEARELGIEV--LTGHVVAATEGGK--RVSGVAVARNGG---AGQR-LEADALAVSGG--WTPVV  413 (985)
T ss_pred             HHHHHHHHcCCEE--EcCCeEEEEecCC--cEEEEEEEecCC---ceEE-EECCEEEEcCC--cCchh
Confidence            2334456667655  8888888886433  222334432100   1257 89999999999  55543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.34  E-value=0.00026  Score=60.37  Aligned_cols=36  Identities=19%  Similarity=0.362  Sum_probs=32.6

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g   43 (303)
                      ..|-|||||.+|..+|++++++|++|.++|-.+.-+
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~   39 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG   39 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence            469999999999999999999999999999877544

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.34  E-value=0.00024  Score=66.66  Aligned_cols=39  Identities=28%  Similarity=0.421  Sum_probs=34.9

Q ss_pred             CCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            2 KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         2 ~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ......+|++|||+|.+|..+|.+|++.|.+|+++|+..
T Consensus         2 ~~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           2 SEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             CcccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            344567999999999999999999998899999999974

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.32  E-value=0.0039  Score=60.18  Aligned_cols=34  Identities=15%  Similarity=0.310  Sum_probs=30.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      .++|+|||+|..|+-+|..+.++|. +|+++.+.+
T Consensus       468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~  502 (654)
T PRK12769        468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD  502 (654)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence            3689999999999999999999997 699988764

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.32  E-value=0.014  Score=56.33  Aligned_cols=34  Identities=24%  Similarity=0.399  Sum_probs=30.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      .++|+|||+|..|+.+|..|.+.|. +|+++.+.+
T Consensus       323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            4789999999999999999999987 599998764

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.28  E-value=0.0039  Score=57.77  Aligned_cols=34  Identities=18%  Similarity=0.297  Sum_probs=28.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      .++|+|||+|..|+.+|..+.+.|. +|++++...
T Consensus       281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~  315 (471)
T PRK12810        281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP  315 (471)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence            4689999999999999999999886 788776544

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=97.18  E-value=0.00099  Score=58.65  Aligned_cols=99  Identities=18%  Similarity=0.178  Sum_probs=68.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC----CCCe-EEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ----SIPY-VILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~----g~~v-~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (303)
                      +..|.|||+|+-|-.+|..|.+.    |.+| -+|+.....+.                                 .-.+
T Consensus       347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~k---------------------------------iLPe  393 (659)
T KOG1346|consen  347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEK---------------------------------ILPE  393 (659)
T ss_pred             cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhh---------------------------------hhHH
Confidence            46899999999999999999764    5555 34443221110                                 0112


Q ss_pred             HHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        82 ~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      .+.+|-.+-+++.|+.+  +-|..|.++....  +...+.+.++       .+ ++.|.||+|+|  -.|+
T Consensus       394 yls~wt~ekir~~GV~V--~pna~v~sv~~~~--~nl~lkL~dG-------~~-l~tD~vVvavG--~ePN  450 (659)
T KOG1346|consen  394 YLSQWTIEKIRKGGVDV--RPNAKVESVRKCC--KNLVLKLSDG-------SE-LRTDLVVVAVG--EEPN  450 (659)
T ss_pred             HHHHHHHHHHHhcCcee--ccchhhhhhhhhc--cceEEEecCC-------Ce-eeeeeEEEEec--CCCc
Confidence            34455555667778777  8899999887765  5577778776       67 89999999999  5554

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.17  E-value=0.0066  Score=60.70  Aligned_cols=34  Identities=24%  Similarity=0.353  Sum_probs=31.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .++|+|||||..|+-+|..+.+.|.+|+++.+.+
T Consensus       447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~  480 (944)
T PRK12779        447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT  480 (944)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence            4689999999999999999999999999998764

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.16  E-value=0.00059  Score=61.35  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=31.3

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +||+|||+|++|+++|..|.+.|.+|+++|+..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            589999999999999999999999999999875

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.03  E-value=0.0025  Score=58.69  Aligned_cols=34  Identities=18%  Similarity=0.176  Sum_probs=31.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .++|+|||+|.+|+-+|..|...+.+|+++.+..
T Consensus       204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            4689999999999999999999999999998864

>TIGR01810 betA choline dehydrogenase

Probab=96.99  E-value=0.00068  Score=63.75  Aligned_cols=32  Identities=28%  Similarity=0.447  Sum_probs=30.2

Q ss_pred             cEEEECCcHHHHHHHHHHhhCC-CCeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQS-IPYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~   40 (303)
                      |++|||+|.+|+.+|.+|++.+ ++|+|+|+..
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~   33 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG   33 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence            7999999999999999999998 7999999975

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=96.99  E-value=0.07  Score=49.64  Aligned_cols=35  Identities=17%  Similarity=0.235  Sum_probs=30.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~   41 (303)
                      .++|+|||||..|+.+|..+.+.|. +|+++|..+.
T Consensus       283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~  318 (485)
T TIGR01317       283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK  318 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence            4689999999999999988888875 7999987654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.01  Score=51.49  Aligned_cols=98  Identities=21%  Similarity=0.221  Sum_probs=67.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .++|+|||||-+.+..|..|.+.+.+|+++-|.+.+-                                   ..    +.
T Consensus       143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-----------------------------------a~----~~  183 (305)
T COG0492         143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-----------------------------------AE----EI  183 (305)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-----------------------------------cC----HH
Confidence            3599999999999999999999999999998876521                                   01    22


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.++... ...+++++.+..+.-++   .-.|.+.+.. +  +... +.+|.|+++.|  ..|.+
T Consensus       184 ~~~~l~~~~-~i~~~~~~~i~ei~G~~---v~~v~l~~~~-~--~~~~-~~~~gvf~~iG--~~p~~  240 (305)
T COG0492         184 LVERLKKNV-KIEVLTNTVVKEILGDD---VEGVVLKNVK-G--EEKE-LPVDGVFIAIG--HLPNT  240 (305)
T ss_pred             HHHHHHhcC-CeEEEeCCceeEEecCc---cceEEEEecC-C--ceEE-EEeceEEEecC--CCCch
Confidence            333333321 34448999998886543   2234554432 1  4467 89999999999  55554

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=96.97  E-value=0.00079  Score=59.82  Aligned_cols=39  Identities=26%  Similarity=0.477  Sum_probs=36.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      +.+|++|||+|+.||.+|..|++.|.+|+++|++...||
T Consensus        13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG   51 (561)
T KOG4254|consen   13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG   51 (561)
T ss_pred             cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence            468999999999999999999999999999999976666

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=96.94  E-value=0.0015  Score=54.99  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=27.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC-------CCeEEEecC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS-------IPYVILERE   39 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g-------~~v~iie~~   39 (303)
                      ..+|+|||+|..||+.|..+.+..       .+|+++...
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr   42 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR   42 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence            369999999999999999888843       578888653

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.91  E-value=0.011  Score=58.85  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=29.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC-C-CCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ-S-IPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~-g-~~v~iie~~~   40 (303)
                      .++|+|||||..|+-+|..+.+. | .+|+++.+..
T Consensus       668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~  703 (1019)
T PRK09853        668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  703 (1019)
T ss_pred             CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence            46899999999999999998887 5 3899998865

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.91  E-value=0.048  Score=52.57  Aligned_cols=34  Identities=15%  Similarity=0.227  Sum_probs=30.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      .++|+|||+|..|+-+|..+.+.|. +|+++.+.+
T Consensus       451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~  485 (639)
T PRK12809        451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD  485 (639)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            4689999999999999999999985 799998764

>PLN02785 Protein HOTHEAD

Probab=96.89  E-value=0.0014  Score=62.10  Aligned_cols=34  Identities=38%  Similarity=0.580  Sum_probs=31.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|++|||+|.+|+.+|.+|.+ +.+|+|+|+..
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~   87 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG   87 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence            35899999999999999999999 68999999976

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=96.88  E-value=0.00026  Score=56.59  Aligned_cols=53  Identities=21%  Similarity=0.408  Sum_probs=39.4

Q ss_pred             CcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCC-CCCccCcC-CCCceEEecCc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENC-YASIWKKY-SYDRLRLHLAK   60 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~-~gg~w~~~-~~~~~~~~~~~   60 (303)
                      .||+|+|+|.+||++|+...++  ..+|.|+|..-. .||.|... .+..+....|.
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPA  133 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPA  133 (328)
T ss_pred             cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChH
Confidence            5999999999999999999866  679999998754 45578653 34444444443

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.82  E-value=0.0052  Score=53.06  Aligned_cols=103  Identities=17%  Similarity=0.077  Sum_probs=72.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .+++++|+|||+.++..|--++..|.++.++=|.+.+=                      ..+           .+.+.+
T Consensus       188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL----------------------R~F-----------D~~i~~  234 (478)
T KOG0405|consen  188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL----------------------RGF-----------DEMISD  234 (478)
T ss_pred             cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh----------------------cch-----------hHHHHH
Confidence            46899999999999999999999999998887766420                      000           124555


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      .+.+..+..+++.  +.++.++.+....+ +...+....+       .. ..+|.|+.|+|  ..|+..
T Consensus       235 ~v~~~~~~~ginv--h~~s~~~~v~K~~~-g~~~~i~~~~-------~i-~~vd~llwAiG--R~Pntk  290 (478)
T KOG0405|consen  235 LVTEHLEGRGINV--HKNSSVTKVIKTDD-GLELVITSHG-------TI-EDVDTLLWAIG--RKPNTK  290 (478)
T ss_pred             HHHHHhhhcceee--cccccceeeeecCC-CceEEEEecc-------cc-ccccEEEEEec--CCCCcc
Confidence            5666666667666  88888988887663 3344444443       23 45899999999  555544

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.82  E-value=0.0013  Score=43.32  Aligned_cols=29  Identities=24%  Similarity=0.460  Sum_probs=27.1

Q ss_pred             EECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          191 VVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       191 ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      |||+|.+|+-+|..|++.+.+|+++++++
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~   29 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKND   29 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence            79999999999999999999999999987

...

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.76  E-value=0.026  Score=57.08  Aligned_cols=33  Identities=21%  Similarity=0.374  Sum_probs=28.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCC-eEEEecC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILERE   39 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~   39 (303)
                      .++|+|||||..|+-+|..+.+.|.+ |+++.+.
T Consensus       571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr  604 (1006)
T PRK12775        571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR  604 (1006)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence            57999999999999999999999985 6777654

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.64  E-value=0.0025  Score=57.76  Aligned_cols=43  Identities=26%  Similarity=0.465  Sum_probs=34.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~   48 (303)
                      ..+||+|+|.|..-..+|..|++.|.+|+-+|+++..||.|..
T Consensus         3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as   45 (438)
T PF00996_consen    3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS   45 (438)
T ss_dssp             SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred             ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence            4699999999999999999999999999999999999997764

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.59  E-value=0.0025  Score=49.69  Aligned_cols=32  Identities=28%  Similarity=0.404  Sum_probs=30.1

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +|+|||||..|.++|..|+++|++|+++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999998865

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.0091  Score=51.42  Aligned_cols=102  Identities=17%  Similarity=0.068  Sum_probs=73.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +-+-+|||||+.+|.||-.|+-.|++|++.-|+-.+-|                       +           ..++.+.
T Consensus       198 PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrG-----------------------F-----------Dqdmae~  243 (503)
T KOG4716|consen  198 PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRG-----------------------F-----------DQDMAEL  243 (503)
T ss_pred             CCceEEEccceeeeehhhhHhhcCCCcEEEEEEeeccc-----------------------c-----------cHHHHHH
Confidence            45789999999999999999999999998877643211                       1           1377888


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~  148 (303)
                      +.++.+..|+.+  .-....+.++..+ ++...|...+..++  ++.+ -.||.|+.|.|.-
T Consensus       244 v~~~m~~~Gikf--~~~~vp~~Veq~~-~g~l~v~~k~t~t~--~~~~-~~ydTVl~AiGR~  299 (503)
T KOG4716|consen  244 VAEHMEERGIKF--LRKTVPERVEQID-DGKLRVFYKNTNTG--EEGE-EEYDTVLWAIGRK  299 (503)
T ss_pred             HHHHHHHhCCce--eecccceeeeecc-CCcEEEEeeccccc--cccc-chhhhhhhhhccc
Confidence            888888889875  4455566776655 35566766655443  3234 4689999999953

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=96.55  E-value=0.0025  Score=57.42  Aligned_cols=33  Identities=36%  Similarity=0.475  Sum_probs=31.5

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ++|+|||+|.+|+++|..|++.|.+|+++++++
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp   35 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP   35 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence            589999999999999999999999999999877

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.51  E-value=0.0054  Score=57.96  Aligned_cols=101  Identities=15%  Similarity=0.197  Sum_probs=67.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ...-+|||||.-|+.+|..|...|.++++++-.+.+-                    .           ...+ ..-.+.
T Consensus       145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM--------------------e-----------rQLD-~~ag~l  192 (793)
T COG1251         145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM--------------------E-----------RQLD-RTAGRL  192 (793)
T ss_pred             cCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH--------------------H-----------Hhhh-hHHHHH
Confidence            3457999999999999999999999999997654310                    0           0000 012234


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      |+...++.++.+  +++...+.+....  ..-.+.++++       .. +.||.||.|+|  -+|+.
T Consensus       193 L~~~le~~Gi~~--~l~~~t~ei~g~~--~~~~vr~~DG-------~~-i~ad~VV~a~G--IrPn~  245 (793)
T COG1251         193 LRRKLEDLGIKV--LLEKNTEEIVGED--KVEGVRFADG-------TE-IPADLVVMAVG--IRPND  245 (793)
T ss_pred             HHHHHHhhccee--ecccchhhhhcCc--ceeeEeecCC-------Cc-ccceeEEEecc--ccccc
Confidence            566667778776  6666665554422  3445677765       56 89999999999  55543

>PRK13984 putative oxidoreductase; Provisional

Probab=96.49  E-value=0.11  Score=49.84  Aligned_cols=31  Identities=10%  Similarity=0.219  Sum_probs=25.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC------CeEEEe
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI------PYVILE   37 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~------~v~iie   37 (303)
                      .++|+|||||..|+-+|..|.+.+.      +|+++.
T Consensus       418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~  454 (604)
T PRK13984        418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS  454 (604)
T ss_pred             CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence            4689999999999999999988753      566653

>PTZ00188 adrenodoxin reductase; Provisional

Probab=96.48  E-value=0.0045  Score=56.74  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=31.9

Q ss_pred             CCCeEEEECCCccHHHHHHHHh-hccCceEEEeecCe
Q 022090          185 GGKNVLVVGSGNSGMEIALDLA-NHAAKTSLVVRSPV  220 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~-~~g~~vt~~~r~~~  220 (303)
                      .+++|+|||+|++|+.+|..|. +.|.+|+++++.+.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~   74 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN   74 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence            5789999999999999999765 56999999999983

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=96.48  E-value=0.035  Score=55.61  Aligned_cols=35  Identities=20%  Similarity=0.380  Sum_probs=30.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhC-CC-CeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~-~v~iie~~~   40 (303)
                      ..++|+|||||..|+-+|..+.+. |. +|+++.++.
T Consensus       665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            357899999999999999998876 76 799998765

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.44  E-value=0.018  Score=51.34  Aligned_cols=60  Identities=7%  Similarity=-0.003  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCC
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP  151 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p  151 (303)
                      ...++.+.|...+++.++.+  +++++|++|  ++  +.|.+.+...      ... +.||.||+|||..+.|
T Consensus        84 ~A~sVv~~L~~~l~~~gV~i--~~~~~V~~i--~~--~~~~v~~~~~------~~~-~~a~~vIlAtGG~s~p  143 (376)
T TIGR03862        84 KAAPLLRAWLKRLAEQGVQF--HTRHRWIGW--QG--GTLRFETPDG------QST-IEADAVVLALGGASWS  143 (376)
T ss_pred             CHHHHHHHHHHHHHHCCCEE--EeCCEEEEE--eC--CcEEEEECCC------ceE-EecCEEEEcCCCcccc
Confidence            57899999999999988776  999999999  22  3488877532      146 8999999999975543

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.41  E-value=0.0055  Score=53.43  Aligned_cols=40  Identities=15%  Similarity=0.094  Sum_probs=34.3

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      |......++|.|||+|..|...|..++..|++|+++|.++
T Consensus         1 ~~~~~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          1 MAVITDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             CCCCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4443344689999999999999999999999999999875

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.38  E-value=0.0033  Score=56.82  Aligned_cols=33  Identities=33%  Similarity=0.392  Sum_probs=31.1

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecCe
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~  220 (303)
                      +|+|||+|.+|+|+|..|++.|.+|+++++++.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            689999999999999999999999999998873

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.35  E-value=0.0051  Score=49.09  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=28.4

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +|.|||+|..|...|..++..|++|+++|.++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            58999999999999999999999999999875

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=96.25  E-value=0.051  Score=49.45  Aligned_cols=94  Identities=16%  Similarity=0.076  Sum_probs=64.5

Q ss_pred             EEECCcHHHHHHH-HHHh----hCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090           11 IMVGAGTSGLATA-ACLS----LQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus        11 vIIGaG~aGl~~A-~~l~----~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      +|++.|..|+..+ ..+.    +.|.+|++++..+..                                   .+..++.+
T Consensus       219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps-----------------------------------lpG~rL~~  263 (422)
T PRK05329        219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS-----------------------------------VPGLRLQN  263 (422)
T ss_pred             EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC-----------------------------------CchHHHHH
Confidence            6688889998887 4443    359999999775421                                   11225777


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEE-EEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV-KASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v-~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      .+.+..++.+...  +.+++|.+++..+  +...+ ...++     +... +++|.||+|+|.+.
T Consensus       264 aL~~~l~~~Gv~I--~~g~~V~~v~~~~--~~V~~v~~~~g-----~~~~-i~AD~VVLAtGrf~  318 (422)
T PRK05329        264 ALRRAFERLGGRI--MPGDEVLGAEFEG--GRVTAVWTRNH-----GDIP-LRARHFVLATGSFF  318 (422)
T ss_pred             HHHHHHHhCCCEE--EeCCEEEEEEEeC--CEEEEEEeeCC-----ceEE-EECCEEEEeCCCcc
Confidence            7877777777655  8999999998765  33332 22222     2257 89999999999643

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.21  E-value=0.15  Score=48.37  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=29.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC-CCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~   40 (303)
                      .++|+|||+|..|+.+|..+.+.+ .+|+++.+.+
T Consensus       267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~  301 (564)
T PRK12771        267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT  301 (564)
T ss_pred             CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence            468999999999999999898888 5688887764

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.20  E-value=0.0071  Score=50.09  Aligned_cols=34  Identities=29%  Similarity=0.516  Sum_probs=31.7

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ++++|||+|..|...|..|.+.|++|+++|+++.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            3799999999999999999999999999999763

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.12  E-value=0.0053  Score=49.21  Aligned_cols=34  Identities=21%  Similarity=0.352  Sum_probs=27.5

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ++|.|||.|+.|+.+|..|++.|++|+.+|.++.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            3799999999999999999999999999998764

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PLN02852 ferredoxin-NADP+ reductase

Probab=96.08  E-value=0.0076  Score=55.72  Aligned_cols=35  Identities=34%  Similarity=0.469  Sum_probs=32.5

Q ss_pred             CCCeEEEECCCccHHHHHHHHhh--ccCceEEEeecC
Q 022090          185 GGKNVLVVGSGNSGMEIALDLAN--HAAKTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~--~g~~vt~~~r~~  219 (303)
                      .+++|+|||+|+.|+.+|..|++  .|.+|+++++.+
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p   61 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP   61 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence            46899999999999999999987  699999999998

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.02  E-value=0.0075  Score=56.30  Aligned_cols=37  Identities=32%  Similarity=0.381  Sum_probs=33.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhC-CCCeEEEecCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCY   42 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~iie~~~~~   42 (303)
                      ..||.+|||||.||+.+|.+|.+. ..+|+++|+....
T Consensus        56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            469999999999999999999998 6799999987633

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.00  E-value=0.0055  Score=44.02  Aligned_cols=36  Identities=33%  Similarity=0.374  Sum_probs=31.5

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++++++|||+|..|..-+..|.+.|.+||++....
T Consensus         5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            568999999999999999999999999999997763

>PRK07236 hypothetical protein; Provisional

Probab=95.91  E-value=0.0091  Score=53.78  Aligned_cols=34  Identities=29%  Similarity=0.412  Sum_probs=32.4

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|.+|+.+|..|++.|.+|++++|.+
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP   39 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            4789999999999999999999999999999987

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.91  E-value=0.0097  Score=55.17  Aligned_cols=36  Identities=22%  Similarity=0.330  Sum_probs=33.0

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+.++|+|||+|.+|+-+|..|.+.|.+|++++.++
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd   48 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD   48 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence            345799999999999999999999999999998876

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=95.89  E-value=0.0085  Score=54.41  Aligned_cols=33  Identities=24%  Similarity=0.444  Sum_probs=31.1

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            489999999999999999999999999999975

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.88  E-value=0.012  Score=50.62  Aligned_cols=34  Identities=24%  Similarity=0.312  Sum_probs=31.8

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .+|.|||+|..|...|..|+..|++|+++|+++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            4899999999999999999999999999998764

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=95.86  E-value=0.0099  Score=58.75  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=33.5

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+++|+|||+|+.|+.+|..|++.|++||++++.+
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            468999999999999999999999999999999864

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.83  E-value=0.01  Score=42.68  Aligned_cols=35  Identities=23%  Similarity=0.295  Sum_probs=31.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..++|+|||+|..|..-+..|.+.|.+|+++.+..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            45789999999999999999999999999998873

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=95.82  E-value=0.0087  Score=52.73  Aligned_cols=32  Identities=34%  Similarity=0.665  Sum_probs=29.0

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|+|||+|.+|+-+|..|++.|.+|++++|++
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~   34 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRP   34 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence            68999999999999999999999999999987

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=95.81  E-value=0.012  Score=47.79  Aligned_cols=37  Identities=32%  Similarity=0.488  Sum_probs=33.5

Q ss_pred             CCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+....|+|||+|++|+-+|..|++.|.+|.+++|+-
T Consensus        27 ~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l   63 (262)
T COG1635          27 DYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL   63 (262)
T ss_pred             hhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence            3456789999999999999999999999999999974

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.78  E-value=0.018  Score=46.92  Aligned_cols=34  Identities=26%  Similarity=0.361  Sum_probs=31.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .++|+|||||..|..-+..|.+.|.+|+|+++..
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4689999999999999999999999999998653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=95.77  E-value=0.01  Score=53.66  Aligned_cols=39  Identities=15%  Similarity=0.147  Sum_probs=31.8

Q ss_pred             eeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           99 SIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        99 ~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      .|++++.|++|+.++  +.+.|...++       .+ +.||+||+|+..
T Consensus       225 ~i~l~~~V~~I~~~~--~~v~v~~~~g-------~~-~~ad~VI~a~p~  263 (450)
T PF01593_consen  225 EIRLNTPVTRIERED--GGVTVTTEDG-------ET-IEADAVISAVPP  263 (450)
T ss_dssp             GEESSEEEEEEEEES--SEEEEEETTS-------SE-EEESEEEE-S-H
T ss_pred             eeecCCcceeccccc--cccccccccc-------eE-EecceeeecCch
Confidence            479999999999987  7788888876       46 899999999985

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.76  E-value=0.014  Score=50.89  Aligned_cols=33  Identities=21%  Similarity=0.242  Sum_probs=31.1

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            479999999999999999999999999999875

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.70  E-value=0.012  Score=54.21  Aligned_cols=33  Identities=30%  Similarity=0.448  Sum_probs=30.9

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      +|+|||.|.+|+++|..|.++|++|+++|++..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~   34 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS   34 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            699999999999999999999999999998764

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=95.69  E-value=0.012  Score=53.18  Aligned_cols=34  Identities=44%  Similarity=0.696  Sum_probs=32.8

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++++|||||.+|++.|..|++.|.+|+++++.|
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep  157 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEP  157 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            5789999999999999999999999999999998

>PRK06847 hypothetical protein; Provisional

Probab=95.66  E-value=0.013  Score=52.44  Aligned_cols=34  Identities=35%  Similarity=0.524  Sum_probs=32.2

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~   37 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP   37 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            4689999999999999999999999999999986

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.66  E-value=0.028  Score=42.52  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=31.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCC-eEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~~   40 (303)
                      ..++++|||+|-+|-+++..|.+.|.+ ++|+.|+.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            457999999999999999999999997 99998864

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.63  E-value=0.022  Score=44.37  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=30.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEec
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILER   38 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~   38 (303)
                      ...+|+|||||..|..-|..|.+.|.+|+++.+
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            357899999999999999999999999999954

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.57  E-value=0.016  Score=51.06  Aligned_cols=32  Identities=28%  Similarity=0.545  Sum_probs=30.6

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +|.|||.|+.||..|..|++.|++|+.+|.+.
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            79999999999999999999999999999875

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.56  E-value=0.021  Score=44.97  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=30.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+.+|+|+|+|.+|..||..|...|.+++++|...
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            35799999999999999999999999999999864

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.56  E-value=0.018  Score=49.72  Aligned_cols=33  Identities=18%  Similarity=0.396  Sum_probs=31.0

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|+|||+|..|...|..|++.|++|+++|+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            479999999999999999999999999999875

>PRK08163 salicylate hydroxylase; Provisional

Probab=95.55  E-value=0.016  Score=52.36  Aligned_cols=34  Identities=35%  Similarity=0.524  Sum_probs=32.4

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +.+|+|||+|.+|+-+|..|++.|.+|++++|++
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~   37 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA   37 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence            4689999999999999999999999999999987

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.54  E-value=0.015  Score=51.27  Aligned_cols=48  Identities=21%  Similarity=0.405  Sum_probs=43.8

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCC
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYD   52 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~   52 (303)
                      +..+||+|||.|..--.+|....+.|.+|+=+|+++..||.|....++
T Consensus         6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms   53 (547)
T KOG4405|consen    6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS   53 (547)
T ss_pred             chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence            456999999999999999999999999999999999999999876554

>PRK05868 hypothetical protein; Validated

Probab=95.53  E-value=0.014  Score=52.39  Aligned_cols=33  Identities=33%  Similarity=0.484  Sum_probs=31.5

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ++|+|||+|..|+-+|..|++.|.+|+++++++
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~   34 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP   34 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence            479999999999999999999999999999987

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=95.51  E-value=0.014  Score=51.54  Aligned_cols=31  Identities=29%  Similarity=0.623  Sum_probs=29.7

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeec
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~  218 (303)
                      .|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence            4899999999999999999999999999987

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=95.47  E-value=0.019  Score=52.01  Aligned_cols=47  Identities=19%  Similarity=0.357  Sum_probs=37.5

Q ss_pred             EecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhc-c-CceEEEeecC
Q 022090          173 IHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH-A-AKTSLVVRSP  219 (303)
Q Consensus       173 ~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~-g-~~vt~~~r~~  219 (303)
                      ..+..++.....+...|+|||+|.+|+-+|..|++. | .+|++++|..
T Consensus        17 ~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        17 GWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             CCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            445556665555567899999999999999999985 8 4899999863

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.46  E-value=0.02  Score=49.38  Aligned_cols=33  Identities=21%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|+|||+|..|...|..|+..|++|+++|+++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            579999999999999999999999999999865

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.45  E-value=0.024  Score=52.18  Aligned_cols=34  Identities=35%  Similarity=0.551  Sum_probs=31.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .++|+|+|+|..|+++|..|++.|++|+++|++.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4789999999999999999999999999999874

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=95.43  E-value=0.023  Score=53.00  Aligned_cols=41  Identities=17%  Similarity=0.229  Sum_probs=35.1

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      |..+..-.+|.|||+|..|...|..|+..|++|+++|+++.
T Consensus         1 ~~~~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          1 MMALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CCccCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            44444556899999999999999999999999999998763

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.42  E-value=0.025  Score=43.57  Aligned_cols=31  Identities=26%  Similarity=0.414  Sum_probs=29.0

Q ss_pred             EEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090           10 VIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus        10 vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      |+|+|+|..|...|..|++.|.+|+++.+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            7899999999999999999999999998864

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.41  E-value=0.016  Score=46.80  Aligned_cols=32  Identities=38%  Similarity=0.744  Sum_probs=29.7

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            58999999999999999999999999997765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.39  E-value=0.029  Score=45.62  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=31.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~   39 (303)
                      ..++|+|||||-.|...|..|.+.|.+|+++++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            3579999999999999999999999999999754

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.39  E-value=0.02  Score=44.55  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=31.2

Q ss_pred             CCCCCeEEEECCCccHHHHHHHHhhccCceEEEe
Q 022090          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVV  216 (303)
Q Consensus       183 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~  216 (303)
                      ...+++|+|||+|..|..-+..|.+.|.+|+++.
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            4568999999999999999999999999999984

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.38  E-value=0.23  Score=43.31  Aligned_cols=35  Identities=29%  Similarity=0.312  Sum_probs=30.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .+||+|||||-+|+.+|..|+---..|+++|-.+.
T Consensus       354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e  388 (520)
T COG3634         354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  388 (520)
T ss_pred             CceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence            57999999999999999999877668999986653

>PRK07233 hypothetical protein; Provisional

Probab=95.37  E-value=0.017  Score=52.73  Aligned_cols=32  Identities=22%  Similarity=0.430  Sum_probs=30.5

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~   32 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADD   32 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC
Confidence            58999999999999999999999999999987

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=95.35  E-value=0.017  Score=51.76  Aligned_cols=32  Identities=41%  Similarity=0.500  Sum_probs=29.9

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~   33 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD   33 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            58999999999999999999999999999864

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06753 hypothetical protein; Provisional

Probab=95.35  E-value=0.018  Score=51.57  Aligned_cols=32  Identities=16%  Similarity=0.381  Sum_probs=31.0

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~   33 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE   33 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            69999999999999999999999999999998

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=95.33  E-value=0.017  Score=51.65  Aligned_cols=33  Identities=24%  Similarity=0.271  Sum_probs=30.7

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -+|+|||+|.+|+-+|..|++.|.+|++++|..
T Consensus         4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~   36 (376)
T PRK11259          4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM   36 (376)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            369999999999999999999999999999874

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.32  E-value=0.031  Score=48.32  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=31.1

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|.|||+|..|...|..|++.|++|+++|+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            579999999999999999999999999999875

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=95.32  E-value=0.018  Score=51.95  Aligned_cols=38  Identities=34%  Similarity=0.619  Sum_probs=33.2

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeee
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp  224 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+..+.+
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~   40 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLE   40 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCcccccc
Confidence            57999999999999999999999999999998423333

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=95.29  E-value=0.019  Score=52.72  Aligned_cols=33  Identities=30%  Similarity=0.499  Sum_probs=30.2

Q ss_pred             CeEEEECCCccHHHHHHHHhhcc--CceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g--~~vt~~~r~~  219 (303)
                      ++|+|||+|.+|+-+|..|++.|  .+|++++.++
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~   35 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASD   35 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence            47999999999999999999987  7899999875

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.25  E-value=0.024  Score=48.99  Aligned_cols=34  Identities=18%  Similarity=0.231  Sum_probs=31.5

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .+|.|||+|..|...|..|+..|++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            5799999999999999999999999999998753

>PRK06475 salicylate hydroxylase; Provisional

Probab=95.22  E-value=0.02  Score=51.77  Aligned_cols=33  Identities=24%  Similarity=0.492  Sum_probs=31.7

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ++|+|||+|..|+-+|..|++.|.+|++++|.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~   35 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ   35 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            689999999999999999999999999999987

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=95.19  E-value=0.021  Score=48.99  Aligned_cols=32  Identities=31%  Similarity=0.546  Sum_probs=30.5

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~   33 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS   33 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            58999999999999999999999999999986

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.18  E-value=0.026  Score=45.99  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=32.6

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +.+++++|||+|.+|.--+..|.+.|.+||++....
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            567899999999999999999999999999997654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.16  E-value=0.023  Score=51.87  Aligned_cols=34  Identities=26%  Similarity=0.485  Sum_probs=32.6

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++++|||+|.+|+-.|..|.+.|.++++++|++
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~   39 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTD   39 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence            6899999999999999999999999999999986

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.16  E-value=0.019  Score=52.12  Aligned_cols=34  Identities=26%  Similarity=0.501  Sum_probs=32.0

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|..|+-+|..|++.|.+|++++|++
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   51 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP   51 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence            3579999999999999999999999999999987

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=95.08  E-value=0.022  Score=46.24  Aligned_cols=34  Identities=29%  Similarity=0.453  Sum_probs=28.6

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ...|+|||+|++|+-+|..|++.|.+|.+++++.
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~   50 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKL   50 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSS
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCC
Confidence            3579999999999999999999999999999875

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.08  E-value=0.041  Score=48.10  Aligned_cols=34  Identities=21%  Similarity=0.236  Sum_probs=31.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|+|||+|..|...|..|++.|.+|+++.++.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            3589999999999999999999999999999865

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.05  E-value=0.36  Score=45.97  Aligned_cols=66  Identities=11%  Similarity=-0.038  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        80 ~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      ...+...|.+.+.+.++.+  +.++.++++-.++++...-+...+..++  +... +.++.||+|||.+..
T Consensus       125 G~~i~~~L~~~~~~~gi~i--~~~~~~~~Li~~~~g~v~Gv~~~~~~~g--~~~~-i~AkaVVLATGG~~~  190 (570)
T PRK05675        125 GHALLHTLYQGNLKNGTTF--LNEWYAVDLVKNQDGAVVGVIAICIETG--ETVY-IKSKATVLATGGAGR  190 (570)
T ss_pred             HHHHHHHHHHHHhccCCEE--EECcEEEEEEEcCCCeEEEEEEEEcCCC--cEEE-EecCeEEECCCCccc
Confidence            5678888888777777655  8899999987653222333333221121  3356 899999999997663

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=95.05  E-value=0.022  Score=53.25  Aligned_cols=33  Identities=30%  Similarity=0.415  Sum_probs=31.1

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -.|+|||||.+|+-+|.+++++|.+|.++++.+
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d   39 (508)
T PRK12266          7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD   39 (508)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            479999999999999999999999999999875

>PRK09126 hypothetical protein; Provisional

Probab=95.05  E-value=0.022  Score=51.26  Aligned_cols=33  Identities=36%  Similarity=0.688  Sum_probs=31.4

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~   36 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP   36 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            469999999999999999999999999999987

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.04  E-value=0.035  Score=48.09  Aligned_cols=33  Identities=24%  Similarity=0.313  Sum_probs=31.0

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|.|||+|..|...|..|+..|++|+++|+++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            579999999999999999999999999999875

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.04  E-value=0.027  Score=45.78  Aligned_cols=35  Identities=23%  Similarity=0.345  Sum_probs=32.0

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhccCceEEEeec
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~  218 (303)
                      ..+++++|||+|..|...+..|.+.|.+|+++.+.
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            56899999999999999999999999999999654

>PRK07588 hypothetical protein; Provisional

Probab=95.02  E-value=0.025  Score=50.99  Aligned_cols=32  Identities=28%  Similarity=0.463  Sum_probs=30.7

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~   33 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP   33 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence            69999999999999999999999999999886

>PRK07045 putative monooxygenase; Reviewed

Probab=95.01  E-value=0.025  Score=50.95  Aligned_cols=33  Identities=30%  Similarity=0.461  Sum_probs=31.6

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~   38 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAA   38 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence            479999999999999999999999999999988

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=94.99  E-value=0.024  Score=50.63  Aligned_cols=28  Identities=46%  Similarity=0.679  Sum_probs=25.0

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEE
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLV  215 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~  215 (303)
                      .|+|||+|..|+|+|..+++.|.+|.++
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Li   28 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLI   28 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            4899999999999999999999999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=94.99  E-value=0.072  Score=47.87  Aligned_cols=60  Identities=18%  Similarity=0.262  Sum_probs=45.3

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        78 ~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      .+...+...+.+.+++ +.+.  ++++.|++++.++  +.|.|.+.++       .. +.+|.||+|+|.++.
T Consensus       132 idp~~~~~~l~~~~~~-G~~i--~~~~~V~~i~~~~--~~~~v~t~~g-------~~-~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       132 LSPPQLCRALLAHAGI-RLTL--HFNTEITSLERDG--EGWQLLDANG-------EV-IAASVVVLANGAQAG  191 (381)
T ss_pred             cChHHHHHHHHhccCC-CcEE--EeCCEEEEEEEcC--CeEEEEeCCC-------CE-EEcCEEEEcCCcccc
Confidence            4556777777777776 7554  8999999998754  5688877654       46 799999999997553

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.98  E-value=0.032  Score=50.72  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=31.7

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ++|.|||.|..|+.+|..|+++|++|+.+|+++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            5899999999999999999999999999998764

>PLN02268 probable polyamine oxidase

Probab=94.96  E-value=0.024  Score=51.87  Aligned_cols=33  Identities=27%  Similarity=0.445  Sum_probs=29.7

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|.+.|.+|++++.++
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~   33 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRD   33 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            379999999999999999999999999997654

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=94.94  E-value=0.025  Score=51.06  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=31.3

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus         7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~   39 (392)
T PRK08773          7 RDAVIVGGGVVGAACALALADAGLSVALVEGRE   39 (392)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            579999999999999999999999999999976

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.94  E-value=0.041  Score=49.20  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=31.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ...+|+|||+|.+|+.+|..|...|.+|+++|++.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            35689999999999999999999999999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=94.93  E-value=0.024  Score=50.78  Aligned_cols=32  Identities=34%  Similarity=0.683  Sum_probs=30.6

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .|+|||+|.+|.-+|..|++.|.+|++++|++
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~   32 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATP   32 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            48999999999999999999999999999997

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=94.93  E-value=0.032  Score=47.87  Aligned_cols=32  Identities=31%  Similarity=0.380  Sum_probs=30.1

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++|||+|.+|.=+|..++++|++|-++++++
T Consensus         3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~   34 (374)
T COG0562           3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRN   34 (374)
T ss_pred             cEEEECCchhHHHHHHHHHHcCCEEEEEeccc
Confidence            67999999999999999999999999999987

>PRK07208 hypothetical protein; Provisional

Probab=94.91  E-value=0.03  Score=52.01  Aligned_cols=34  Identities=24%  Similarity=0.541  Sum_probs=31.3

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~   37 (479)
T PRK07208          4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP   37 (479)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            4689999999999999999999999999998865

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.87  E-value=0.043  Score=41.46  Aligned_cols=34  Identities=21%  Similarity=0.406  Sum_probs=30.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      ..+|+|||+|..|..+|..|.+.|+ +++++|.+.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            3689999999999999999999999 799999865

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.87  E-value=0.049  Score=47.49  Aligned_cols=34  Identities=21%  Similarity=0.243  Sum_probs=31.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|.|||+|..|.+.|..|.+.|++|++++++.
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4689999999999999999999999999999875

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=94.86  E-value=0.027  Score=53.16  Aligned_cols=33  Identities=33%  Similarity=0.516  Sum_probs=30.9

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -.|+|||+|.+|+-+|..|+.+|.+|+++++.+
T Consensus         7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d   39 (546)
T PRK11101          7 TDVIIIGGGATGAGIARDCALRGLRCILVERHD   39 (546)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            479999999999999999999999999999865

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.86  E-value=0.038  Score=47.48  Aligned_cols=34  Identities=21%  Similarity=0.348  Sum_probs=31.2

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .+|.|||+|..|...|..|++.|++|+++|.++.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            4799999999999999999999999999997653

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=94.85  E-value=0.066  Score=49.29  Aligned_cols=35  Identities=31%  Similarity=0.329  Sum_probs=32.3

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..-+|+|||+|+.|.-+|..|++.|.+|.++++.+
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            34589999999999999999999999999999986

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.84  E-value=0.035  Score=51.59  Aligned_cols=35  Identities=31%  Similarity=0.379  Sum_probs=32.3

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++++|||+|.+|+++|..|.++|.+|+++.+++
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            46899999999999999999999999999998776

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=94.84  E-value=0.028  Score=50.78  Aligned_cols=33  Identities=18%  Similarity=0.501  Sum_probs=30.6

Q ss_pred             CeEEEECCCccHHHHHHHHhhc--cCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANH--AAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~--g~~vt~~~r~~  219 (303)
                      -+|+|||+|.+|+-+|..|++.  |.+|++++|.+
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~   37 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES   37 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            3799999999999999999999  99999999874

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=94.83  E-value=0.024  Score=51.32  Aligned_cols=32  Identities=25%  Similarity=0.560  Sum_probs=25.7

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|+|||+|++|+-+|..+++.|.+|++++|.+
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~   33 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNK   33 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCc
Confidence            58999999999999999999999999999986

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.83  E-value=0.019  Score=44.64  Aligned_cols=32  Identities=31%  Similarity=0.470  Sum_probs=30.1

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|.|+|+|+.|.-+|..|+..|.+|+++.|++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999998875

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK08013 oxidoreductase; Provisional

Probab=94.82  E-value=0.027  Score=50.98  Aligned_cols=33  Identities=18%  Similarity=0.416  Sum_probs=31.5

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|.-+|..|++.|.+|+++++.+
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~   36 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV   36 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence            479999999999999999999999999999987

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=94.82  E-value=0.034  Score=50.19  Aligned_cols=34  Identities=21%  Similarity=0.374  Sum_probs=32.0

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecCe
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~  220 (303)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            5799999999999999999999999999999883

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.78  E-value=0.044  Score=42.90  Aligned_cols=33  Identities=21%  Similarity=0.347  Sum_probs=29.1

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|.+||-|..|...|.+|.++|++|.++|+++
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            489999999999999999999999999999875

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=94.78  E-value=0.033  Score=50.81  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=31.6

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +||+|+|+|..|+-+|.+|+++|.+||+.++++
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~   33 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARD   33 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccC
Confidence            589999999999999999999999999999987

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=94.77  E-value=0.031  Score=49.87  Aligned_cols=32  Identities=25%  Similarity=0.473  Sum_probs=29.7

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~   33 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS   33 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            58999999999999999999999999998754

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=94.77  E-value=0.028  Score=50.61  Aligned_cols=33  Identities=33%  Similarity=0.631  Sum_probs=31.3

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~   40 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP   40 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            479999999999999999999999999999986

>PRK06184 hypothetical protein; Provisional

Probab=94.76  E-value=0.03  Score=52.30  Aligned_cols=33  Identities=33%  Similarity=0.740  Sum_probs=31.5

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -.|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~   36 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP   36 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            479999999999999999999999999999987

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.76  E-value=0.045  Score=47.47  Aligned_cols=32  Identities=22%  Similarity=0.358  Sum_probs=29.9

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +|+|||+|..|...|..|.+.|.+|++++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            69999999999999999999999999999843

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.75  E-value=0.041  Score=51.21  Aligned_cols=33  Identities=27%  Similarity=0.448  Sum_probs=31.4

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++|||+|..|+-+|..|++.|.+|++++|.+
T Consensus         4 ~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~   36 (487)
T COG1233           4 YDVVVIGAGLNGLAAAALLARAGLKVTVLEKND   36 (487)
T ss_pred             ccEEEECCChhHHHHHHHHHhCCCEEEEEEecC
Confidence            589999999999999999999999999999876

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.74  E-value=0.053  Score=47.70  Aligned_cols=33  Identities=27%  Similarity=0.424  Sum_probs=30.9

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|.|||+|..|...|..|.+.|++|++++++.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            489999999999999999999999999999864

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=94.74  E-value=0.029  Score=52.66  Aligned_cols=33  Identities=30%  Similarity=0.465  Sum_probs=27.9

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      |+|+|||+|.+|+-.+..|.+.|.+++++++++
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~   34 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD   34 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCC
Confidence            799999999999999999999999999999986

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR02028 ChlP geranylgeranyl reductase

Probab=94.72  E-value=0.033  Score=50.41  Aligned_cols=32  Identities=41%  Similarity=0.539  Sum_probs=30.6

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|+|||+|+.|.-+|..|++.|.+|.+++|.+
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~   33 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP   33 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence            68999999999999999999999999999976

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.71  E-value=0.042  Score=50.97  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=32.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ...+|+|+|+|++|+.++..++..|.+|+++|.++
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35789999999999999999999999999999875

>PRK08244 hypothetical protein; Provisional

Probab=94.70  E-value=0.031  Score=52.08  Aligned_cols=33  Identities=30%  Similarity=0.507  Sum_probs=31.3

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~   35 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLK   35 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            469999999999999999999999999999987

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=94.70  E-value=0.03  Score=50.27  Aligned_cols=32  Identities=31%  Similarity=0.582  Sum_probs=30.4

Q ss_pred             eEEEECCCccHHHHHHHHhhcc-CceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g-~~vt~~~r~~  219 (303)
                      .|+|||+|.+|+-+|..|++.| .+|++++|.+
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~   33 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS   33 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence            4899999999999999999999 9999999986

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK04148 hypothetical protein; Provisional

Probab=94.69  E-value=0.032  Score=41.84  Aligned_cols=34  Identities=12%  Similarity=0.215  Sum_probs=30.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ..++++||.| .|...|..|.+.|++|+.+|.++.
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            3579999999 999999999999999999998764

>TIGR00292 thiazole biosynthesis enzyme

Probab=94.69  E-value=0.036  Score=46.82  Aligned_cols=34  Identities=35%  Similarity=0.542  Sum_probs=31.9

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .-.|+|||+|.+|+-+|..+++.|.+|.+++|.+
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~   54 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL   54 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            4579999999999999999999999999999986

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=94.66  E-value=0.033  Score=50.10  Aligned_cols=33  Identities=33%  Similarity=0.512  Sum_probs=31.3

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~   38 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRA   38 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            479999999999999999999999999999987

>PRK06185 hypothetical protein; Provisional

Probab=94.64  E-value=0.034  Score=50.37  Aligned_cols=34  Identities=24%  Similarity=0.444  Sum_probs=31.8

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~   39 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA   39 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            3579999999999999999999999999999986

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=94.63  E-value=0.029  Score=50.88  Aligned_cols=33  Identities=30%  Similarity=0.522  Sum_probs=31.1

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            379999999999999999999999999999986

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=94.63  E-value=0.035  Score=50.45  Aligned_cols=32  Identities=34%  Similarity=0.527  Sum_probs=30.1

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP   33 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            68999999999999999999999999999974

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.63  E-value=0.052  Score=47.13  Aligned_cols=30  Identities=27%  Similarity=0.282  Sum_probs=29.0

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEec
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILER   38 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~   38 (303)
                      +|+|||+|..|...|..|++.|.+|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            699999999999999999999999999998

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=94.63  E-value=0.036  Score=47.31  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=32.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+.+|+|||+|.+|..+|+-+.-.|.+|+++|.+.
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~  201 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI  201 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence            35689999999999999999999999999999873

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=94.62  E-value=0.033  Score=50.09  Aligned_cols=33  Identities=24%  Similarity=0.409  Sum_probs=30.9

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|..|.-+|..|++.|.+|+++++.+
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            379999999999999999999999999999875

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=94.62  E-value=0.034  Score=53.37  Aligned_cols=33  Identities=42%  Similarity=0.635  Sum_probs=31.1

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -.|+|||+|.+|+-+|.+|+.+|.+|+++++.+
T Consensus        72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d  104 (627)
T PLN02464         72 LDVLVVGGGATGAGVALDAATRGLRVGLVERED  104 (627)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence            579999999999999999999999999999875

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.61  E-value=0.035  Score=51.93  Aligned_cols=33  Identities=30%  Similarity=0.438  Sum_probs=31.3

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -.|+|||||.+|+-+|.+|+.+|.+|.++++.+
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d   39 (502)
T PRK13369          7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKDD   39 (502)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            479999999999999999999999999999986

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.61  E-value=0.057  Score=43.82  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=31.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      ..+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~   55 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV   55 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            4689999999999999999999999 699999873

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=94.59  E-value=0.036  Score=50.39  Aligned_cols=32  Identities=31%  Similarity=0.653  Sum_probs=30.1

Q ss_pred             eEEEECCCccHHHHHHHHhhcc-CceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g-~~vt~~~r~~  219 (303)
                      +|+|||+|..|+-+|..|++.| .+|++++|++
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~   34 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP   34 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence            6999999999999999999998 4999999987

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=94.58  E-value=0.04  Score=49.45  Aligned_cols=34  Identities=24%  Similarity=0.424  Sum_probs=31.3

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus         4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~   37 (387)
T COG0665           4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE   37 (387)
T ss_pred             cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence            4689999999999999999999999999998765

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=94.58  E-value=0.035  Score=52.48  Aligned_cols=33  Identities=42%  Similarity=0.559  Sum_probs=30.8

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -.|+|||+|..|+++|..+++.|.+|.++++.+
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~   37 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL   37 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence            479999999999999999999999999999874

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.58  E-value=0.059  Score=47.01  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=30.8

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|.|||+|..|.+.|..|++.|++|+++|++.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999765

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.57  E-value=0.059  Score=46.88  Aligned_cols=33  Identities=24%  Similarity=0.379  Sum_probs=30.8

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|+|||+|..|...|..|.+.|.+|+++.|..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            479999999999999999999999999999963

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	303
4a9w_A	357	Flavin-Containing Monooxygenase From Stenotrophomon		9e-16
4aos_A	549	Oxidized Steroid Monooxygenase Bound To Nadp Length		2e-14
4ap3_A	549	Oxidized Steroid Monooxygenase Bound To Nadp Length		2e-14
4ap1_A	549	Oxidized Steroid Monooxygenase Bound To Nadp Length		2e-14
1w4x_A	542	Phenylacetone Monooxygenase, A Baeyer-villiger Mono		2e-13
2ylw_A	542	Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O		2e-13
2ylz_A	542	Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O		2e-13
2ylx_A	542	Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O		2e-13
3uov_A	545	Crystal Structure Of Otemo (Fad Bound Form 1) Lengt		4e-11
3gwd_A	540	Closed Crystal Structure Of Cyclohexanone Monooxyge		1e-10
3ucl_A	573	Cyclohexanone-Bound Crystal Structure Of Cyclohexan		1e-10
2xvi_A	464	Crystal Structure Of The Mutant Bacterial Flavin Co		1e-04
2xve_A	464	Crystal Structure Of Bacterial Flavin-Containing Mo		2e-04
2xvf_A	464	Crystal Structure Of Bacterial Flavin-Containing Mo		4e-04
2xls_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		9e-04
2xlr_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		9e-04

>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas Maltophilia Length = 357

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 19/212 (8%)
Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
           V+V+++G G SGL+    L    + YVIL+ E      W+ +++  L L     +  +P 
Sbjct: 4   VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ-HAWHSLHLFSPAGWSSIPG 62
Query: 68  LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS 127
            P P+S   + +RA+ + +L  Y   + + P +R  R    + + E   +       +  
Sbjct: 63  WPMPASQGPYPARAEVLAYLAQYEQKYAL-PVLRPIRVQRVSHFGERLRV-------VAR 114
Query: 128 PGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGK 187
            GR+    +  R ++ A+G     +TP+ +GL SF       G  +HS  Y    P+ G 
Sbjct: 115 DGRQ----WLARAVISATGTWGEAYTPEYQGLESFA------GIQLHSAHYSTPAPFAGM 164
Query: 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
            V ++G GNSG +I  +++  A  T +    P
Sbjct: 165 RVAIIGGGNSGAQILAEVSTVAETTWITQHEP 196

>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 19/215 (8%)
Query: 9   EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK---QFCQL 65
           +V++VGAG +GL        Q +     E  +    +W    Y   R  +      +   
Sbjct: 23  DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFS 82
Query: 66  PHLPFPSSY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN 124
           P L    ++   + ++ + + +L+H    F++   IR+   V SA  DE    W V+   
Sbjct: 83  PELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDR 142
Query: 125 LLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQY-KNGKP 183
               G E+    S RFLVVA+G  +N  TP   GL  F      TG+++H+ ++  +G  
Sbjct: 143 ----GDEV----SARFLVVAAGPLSNANTPAFDGLDRF------TGDIVHTARWPHDGVD 188
Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218
           + GK V V+G+G+SG++    +A  A +  +  RS
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS 223

>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 19/215 (8%)
Query: 9   EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK---QFCQL 65
           +V++VGAG +GL        Q +     E  +    +W    Y   R  +      +   
Sbjct: 23  DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFS 82
Query: 66  PHLPFPSSY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN 124
           P L    ++   + ++ + + +L+H    F++   IR+   V SA  DE    W V+   
Sbjct: 83  PELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDR 142
Query: 125 LLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQY-KNGKP 183
               G E+    S RFLVVA+G  +N  TP   GL  F      TG+++H+ ++  +G  
Sbjct: 143 ----GDEV----SARFLVVAAGPLSNANTPAFDGLDRF------TGDIVHTARWPHDGVD 188
Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218
           + GK V V+G+G+SG++    +A  A +  +  RS
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS 223

>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 19/215 (8%)
Query: 9   EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK---QFCQL 65
           +V++VGAG +GL        Q +     E  +    +W    Y   R  +      +   
Sbjct: 23  DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFS 82
Query: 66  PHLPFPSSY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN 124
           P L    ++   + ++ + + +L+H    F++   IR+   V SA  DE    W V+   
Sbjct: 83  PELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDR 142
Query: 125 LLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQY-KNGKP 183
               G E+    S RFLVVA+G  +N  TP   GL  F      TG+++H+ ++  +G  
Sbjct: 143 ----GDEV----SARFLVVAAGPLSNANTPAFDGLDRF------TGDIVHTARWPHDGVD 188
Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218
           + GK V V+G+G+SG++    +A  A +  +  RS
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS 223

>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger Monooxygenase Length = 542

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 23/219 (10%)
Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK-QFCQ-- 64
           V+V++VGAG SGL     L        ++E       +W    Y   R  +   ++C   
Sbjct: 17  VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSF 76
Query: 65  ----LPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV 120
               L    +   Y    S+ + + +++     F++   I +  +V +A++DEATN W V
Sbjct: 77  SEEVLQEWNWTERY---ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTV 133
Query: 121 KASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKN 180
             ++    G  I      R+L++ASG+ + P  P+  GL  F  +   TG   H      
Sbjct: 134 DTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP---- 181
Query: 181 GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
              + G+ V V+G+G+SG++++  +A  AA+  +  R+P
Sbjct: 182 -VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219

>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Arg337lys Mutant In Complex With Mes Length = 542

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 23/219 (10%)
Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK-QFCQ-- 64
           V+V++VGAG SGL     L        ++E       +W    Y   R  +   ++C   
Sbjct: 17  VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSF 76
Query: 65  ----LPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV 120
               L    +   Y    S+ + + +++     F++   I +  +V +A++DEATN W V
Sbjct: 77  SEEVLQEWNWTERY---ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTV 133
Query: 121 KASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKN 180
             ++    G  I      R+L++ASG+ + P  P+  GL  F  +   TG   H      
Sbjct: 134 DTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP---- 181
Query: 181 GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
              + G+ V V+G+G+SG++++  +A  AA+  +  R+P
Sbjct: 182 -VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219

>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Met446gly Mutant Length = 542

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 23/219 (10%)
Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK-QFCQ-- 64
           V+V++VGAG SGL     L        ++E       +W    Y   R  +   ++C   
Sbjct: 17  VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSF 76
Query: 65  ----LPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV 120
               L    +   Y    S+ + + +++     F++   I +  +V +A++DEATN W V
Sbjct: 77  SEEVLQEWNWTERY---ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTV 133
Query: 121 KASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKN 180
             ++    G  I      R+L++ASG+ + P  P+  GL  F  +   TG   H      
Sbjct: 134 DTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP---- 181
Query: 181 GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
              + G+ V V+G+G+SG++++  +A  AA+  +  R+P
Sbjct: 182 -VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219

>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Asp66ala Mutant In Complex With Nadp And Mes Length = 542

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 23/219 (10%)
Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK-QFCQ-- 64
           V+V++VGAG SGL     L        ++E       +W    Y   R  +   ++C   
Sbjct: 17  VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCAIESIEYCYSF 76
Query: 65  ----LPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV 120
               L    +   Y    S+ + + +++     F++   I +  +V +A++DEATN W V
Sbjct: 77  SEEVLQEWNWTERY---ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTV 133
Query: 121 KASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKN 180
             ++    G  I      R+L++ASG+ + P  P+  GL  F  +   TG   H      
Sbjct: 134 DTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP---- 181
Query: 181 GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
              + G+ V V+G+G+SG++++  +A  AA+  +  R+P
Sbjct: 182 -VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219

>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1) Length = 545

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 25/229 (10%)
Query: 2   KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQ 61
           + ++  ++ +++GAG +G+  A  ++   +  + +E        W    Y   RL     
Sbjct: 4   RAKSPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESY 63
Query: 62  ----FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM 117
               F     +P       F S+ + + +++      ++    R+   V +A Y E   +
Sbjct: 64  AYGYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRL 123
Query: 118 WNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQ 177
           W V   N        EE  + RFL+ A+G  +    PDI+G+ SF       GE  HS++
Sbjct: 124 WEVTLDN--------EEVVTCRFLISATGPLSASRMPDIKGIDSF------KGESFHSSR 169
Query: 178 Y---KNGKPYG----GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
           +     G P G    GK V V+G+G +G++I    A  A +  +  R+P
Sbjct: 170 WPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTP 218

>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase Length = 540

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 95/217 (43%), Gaps = 19/217 (8%)
Query: 8   VEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASIWKKYSY----DRLRLHLAKQF 62
           V+ +++GAG  G+     L  +  +  V  ++ +     W    Y         HL +  
Sbjct: 9   VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFS 68
Query: 63  CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA 122
                L   +    ++++ + +E+L+  V  F++    ++   V SA Y +  N+W V  
Sbjct: 69  FDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT 128
Query: 123 SNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGK 182
            +         E Y  +++V A G  +    P++ GL +F       GE IH+  +  GK
Sbjct: 129 DH--------GEVYRAKYVVNAVGLLSAINFPNLPGLDTF------EGETIHTAAWPEGK 174
Query: 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
              G+ V V+G+G++G ++   LA      ++ VR+P
Sbjct: 175 SLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTP 211

>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone Monooxygenase In The Rotated Conformation Length = 573

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 95/217 (43%), Gaps = 19/217 (8%)
Query: 8   VEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASIWKKYSY----DRLRLHLAKQF 62
           V+ +++GAG  G+     L  +  +  V  ++ +     W    Y         HL +  
Sbjct: 42  VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFS 101
Query: 63  CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA 122
                L   +    ++++ + +E+L+  V  F++    ++   V SA Y +  N+W V  
Sbjct: 102 FDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT 161
Query: 123 SNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGK 182
            +         E Y  +++V A G  +    P++ GL +F       GE IH+  +  GK
Sbjct: 162 DH--------GEVYRAKYVVNAVGLLSAINFPNLPGLDTF------EGETIHTAAWPEGK 207
Query: 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
              G+ V V+G+G++G ++   LA      ++ VR+P
Sbjct: 208 SLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTP 244

>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin Containing Monooxygenase (Y207s) Length = 464

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 72  SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
           +SYP    R    +++   V    +   IR+  +V    ++E +  + V   +  +    
Sbjct: 95  ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIY 151
Query: 132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLV 191
            EE+    ++V  +G  + P+ P+  G   F       G ++H+  +++   +  K VL+
Sbjct: 152 SEEF---DYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTVLL 202
Query: 192 VGSGNSGMEIALDLANHAAK 211
           VGS +S  +I      + AK
Sbjct: 203 VGSSSSAEDIGSQCYKYGAK 222

>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 72  SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
           +SYP    R    +++   V    +   IR+  +V    ++E +  + V   +  +    
Sbjct: 95  ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIY 151
Query: 132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLV 191
            EE+    ++V  +G  + P+ P+  G   F       G ++H+  +++   +  K VL+
Sbjct: 152 SEEF---DYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTVLL 202
Query: 192 VGSGNSGMEIALDLANHAAK 211
           VGS  S  +I      + AK
Sbjct: 203 VGSSYSAEDIGSQCYKYGAK 222

>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 72  SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
           +SYP    R    +++   V    +   IR+  +V    ++E +  + V   +  +    
Sbjct: 95  ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIY 151
Query: 132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLV 191
            EE+    ++V  +G  + P+ P+  G   F       G ++H+  +++   +  K VL+
Sbjct: 152 SEEF---DYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTVLL 202
Query: 192 VGSGNSGMEIALDLANHAAK 211
           VGS  S  +I      + AK
Sbjct: 203 VGSSYSAEDIGSQCYKYGAK 222

>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78lys Mutant Length = 461

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 72  SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
           +SYP    R    +++   V    +   IR+  +V    ++E +  + V   +  +    
Sbjct: 100 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTT---- 152
Query: 132 IEEYYSGRF--LVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
            +  YS  F  +V  +G  + P+ P+  G   F       G ++H+  +++   +  K V
Sbjct: 153 -DTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTV 205
Query: 190 LVVGSGNSGMEIALDLANHAAK 211
           L+VGS  S  +I      + AK
Sbjct: 206 LLVGSSYSAEDIGSQCYKYGAK 227

>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78asp Mutant Length = 461

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 72  SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
           +SYP    R    +++   V    +   IR+  +V    ++E +  + V   +  +    
Sbjct: 100 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTT---- 152
Query: 132 IEEYYSGRF--LVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
            +  YS  F  +V  +G  + P+ P+  G   F       G ++H+  +++   +  K V
Sbjct: 153 -DTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTV 205
Query: 190 LVVGSGNSGMEIALDLANHAAK 211
           L+VGS  S  +I      + AK
Sbjct: 206 LLVGSSYSAEDIGSQCYKYGAK 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	303
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	4e-84
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	2e-41
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	4e-37
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	5e-33
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	5e-32
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	5e-26
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	9e-26
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	3e-25
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	2e-24
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	3e-08
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	2e-07
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	6e-07
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	2e-06
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	1e-05
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	1e-05
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	2e-05
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	2e-05
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	4e-05
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	4e-05
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	6e-05
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	6e-05
3r9u_A	315	Thioredoxin reductase; structural genomics, center	7e-05
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	7e-05
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	2e-04
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	2e-04
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	2e-04
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	3e-04
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	4e-04
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	6e-04

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score =  256 bits (655), Expect = 4e-84
 Identities = 66/285 (23%), Positives = 113/285 (39%), Gaps = 37/285 (12%)

Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
           V+V+++G G SGL+    L    + YVIL+ E      W+   +  L L     +  +P 
Sbjct: 4   VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHA-WHSLHLFSPAGWSSIPG 62

Query: 68  LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS 127
            P P+S   + +RA+ + +L  Y   + +   +     V+  S+        V A +   
Sbjct: 63  WPMPASQGPYPARAEVLAYLAQYEQKYAL--PVLRPIRVQRVSHFGER--LRVVARD--- 115

Query: 128 PGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGK 187
            GR+    +  R ++ A+G     +TP+ +GL SF       G  +HS  Y    P+ G 
Sbjct: 116 -GRQ----WLARAVISATGTWGEAYTPEYQGLESF------AGIQLHSAHYSTPAPFAGM 164

Query: 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLM 247
            V ++G GNSG +I  +++  A  T +    P  +        G VLF+     W     
Sbjct: 165 RVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADD---VDGRVLFERATERW----- 216

Query: 248 VMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIK 292
                      ++    +P   P          PV+DA     + 
Sbjct: 217 ----------KAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLA 251

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score =  146 bits (370), Expect = 2e-41
 Identities = 43/242 (17%), Positives = 82/242 (33%), Gaps = 41/242 (16%)

Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
            +V ++GAG +G+  A  L    I  VI+  +      +K +     R            
Sbjct: 5   HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHW-PKSTRTITPSFTSNGFG 63

Query: 68  L-----------PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN 116
           +           P  +     +S   + E+L    +H+ +  +I     V + S D+A  
Sbjct: 64  MPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYEL--NIFENTVVTNISADDAY- 120

Query: 117 MWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHST 176
            + +  +          E Y   ++ VA+G+   P  P   G              IH +
Sbjct: 121 -YTIATT---------TETYHADYIFVATGDYNFPKKPFKYG--------------IHYS 156

Query: 177 QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFK 236
           + ++   +     +V+G   SG + A  LA + +  +L   +             V L  
Sbjct: 157 EIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPD--ADPSVRLSP 214

Query: 237 YV 238
           Y 
Sbjct: 215 YT 216

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score =  136 bits (343), Expect = 4e-37
 Identities = 52/295 (17%), Positives = 96/295 (32%), Gaps = 50/295 (16%)

Query: 13  VGAGTSGLATAACLSLQSIPY--VILERENCYASIWKKYS-------------------- 50
           +GAG SGL TA  L  +       + ER      +W  Y+                    
Sbjct: 12  IGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWN-YTSTLSNKLPVPSTNPILTTEP 70

Query: 51  --------------YDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNI 96
                         Y  L+ +   +        F      F  R    E+   Y      
Sbjct: 71  IVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLL- 129

Query: 97  GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI 156
            P I+    V           W V      +     ++ +    + + +G    P+ P+I
Sbjct: 130 -PFIKLATDVLDIEKK--DGSWVVTYKGTKAGSPISKDIFD--AVSICNGHYEVPYIPNI 184

Query: 157 RGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVV 216
           +GL  +  +    G V+HS+ ++  + + G++VLVVG  +S  ++   L   A       
Sbjct: 185 KGLDEY--AKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQS 242

Query: 217 RSPVHVLSREMVYLGVVLFKYVP-----FGWVDTLMVMLSRLVYGDLSKYGIPKP 266
                 +  E +     + K+ P     +     ++  + R++Y     Y +P P
Sbjct: 243 LLGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFP 297

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score =  125 bits (315), Expect = 5e-33
 Identities = 44/285 (15%), Positives = 96/285 (33%), Gaps = 40/285 (14%)

Query: 10  VIMVGAGTSGLATAACLS------LQSIPYVILERENCYASIWKKYS------------- 50
           + ++GAG SG+A             +    V  E++  +   W  Y+             
Sbjct: 5   IAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWN-YTWRTGLDENGEPVH 63

Query: 51  ---YDRLRLHLAKQFCQLPHLPFPSSY----PMFVSRAQFIEHLDHYVSHFNIGPSIRYQ 103
              Y  L  +  K+  +     F   +      +  R    +++   V    +   IR+ 
Sbjct: 64  SSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFN 123

Query: 104 RSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163
            +V    ++E +  + V   +  +     EE+    ++V  +G  + P+ P+  G   F 
Sbjct: 124 TAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEF---DYVVCCTGHFSTPYVPEFEGFEKF- 179

Query: 164 SSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVL 223
                 G ++H+  +++   +  K VL+VGS  S  +I      + AK  +       + 
Sbjct: 180 -----GGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMG 234

Query: 224 SREMVYLG----VVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIP 264
            +          +V        + D     +  ++      +  P
Sbjct: 235 YKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFP 279

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score =  122 bits (307), Expect = 5e-32
 Identities = 50/299 (16%), Positives = 89/299 (29%), Gaps = 53/299 (17%)

Query: 10  VIMVGAGTSGLATAACLSLQSIP-----YVILERENCYASIWKK---YSYDRLRLHLAKQ 61
           +I VG G S +A A  L  ++        + L+++  Y   W      S   L++   K 
Sbjct: 33  LIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQSELQISFLKD 90

Query: 62  FCQL-----------------PHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQR 104
              L                   + F +    +  R +F ++L    SHF      RY  
Sbjct: 91  LVSLRNPTSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHF--QEQSRYGE 148

Query: 105 SVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164
            V       +            +   E     + R LVV+ G    P  P +        
Sbjct: 149 EVLRIEPMLSAGQVEALRVISRNADGEELVRTT-RALVVSPG--GTPRIPQVFRALKG-- 203

Query: 165 SATGTGEVIHSTQY------KNGKPYGGKNVLVVGSGNSGMEIALDLAN--HAAKTSLVV 216
                G V H +QY      +         + ++G G S  E  +DL +   + +  +++
Sbjct: 204 ----DGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMIL 259

Query: 217 RSPVHV------LSREMVYLGVV-LFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPRE 268
           R+             E+       L         + L+       Y  +    I +   
Sbjct: 260 RASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYG 318

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score =  106 bits (267), Expect = 5e-26
 Identities = 52/289 (17%), Positives = 106/289 (36%), Gaps = 43/289 (14%)

Query: 8   VEVIMVGAGTSGLATAACLSLQSI-PYVILE---------RENCY-------ASIWKKYS 50
           V+ +++GAG  G+     L  +     V  +           N Y        S    Y 
Sbjct: 9   VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHL--YR 66

Query: 51  YDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS 110
           +        +   Q     + ++Y    ++ + +E+L+  V  F++    ++   V SA 
Sbjct: 67  FS-----FDRDLLQEST--WKTTYI---TQPEILEYLEDVVDRFDLRRHFKFGTEVTSAL 116

Query: 111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTG 170
           Y +  N+W V   +    G      Y  +++V A G  +    P++ GL +F       G
Sbjct: 117 YLDDENLWEVTTDH----GEV----YRAKYVVNAVGLLSAINFPNLPGLDTF------EG 162

Query: 171 EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL 230
           E IH+  +  GK   G+ V V+G+G++G ++   LA      ++ VR+P + +      +
Sbjct: 163 ETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPV 222

Query: 231 GVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGK 279
                  +   +        +  V     +  +P            + +
Sbjct: 223 NPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQE 271

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score =  105 bits (265), Expect = 9e-26
 Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 45/236 (19%)

Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILE---------RENCY-------ASIWKKYSY 51
            +V++VGAG +GL        Q +     E           N Y        S      Y
Sbjct: 22  YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVES----IDY 77

Query: 52  DRLRLHLAKQFCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS 110
                     +   P L    ++   + ++ + + +L+H    F++   IR+   V SA 
Sbjct: 78  ---------SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAV 128

Query: 111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTG 170
            DE    W V+       G E     S RFLVVA+G  +N  TP   GL  F      TG
Sbjct: 129 LDEEGLRWTVRTDR----GDE----VSARFLVVAAGPLSNANTPAFDGLDRF------TG 174

Query: 171 EVIHSTQY-KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR 225
           +++H+ ++  +G  + GK V V+G+G+SG++    +A  A +  +  RS  + +  
Sbjct: 175 DIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPA 230

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score =  104 bits (262), Expect = 3e-25
 Identities = 54/236 (22%), Positives = 102/236 (43%), Gaps = 45/236 (19%)

Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILE---------RENCY-------ASIWKKYSY 51
           V+V++VGAG SGL     L        ++E           N Y        SI   YS+
Sbjct: 17  VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSF 76

Query: 52  DRLRLHLAKQFCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS 110
                           +    ++   + S+ + + +++     F++   I +  +V +A+
Sbjct: 77  S-------------EEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAA 123

Query: 111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTG 170
           +DEATN W V  ++    G         R+L++ASG+ + P  P+  GL  F       G
Sbjct: 124 FDEATNTWTVDTNH----GDR----IRARYLIMASGQLSVPQLPNFPGLKDF------AG 169

Query: 171 EVIHSTQY-KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR 225
            + H+  +      + G+ V V+G+G+SG++++  +A  AA+  +  R+P   +  
Sbjct: 170 NLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPA 225

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score =  101 bits (254), Expect = 2e-24
 Identities = 51/239 (21%), Positives = 90/239 (37%), Gaps = 49/239 (20%)

Query: 8   VEVIMVGAGTSGLATAACLSLQSIPYVILE---------RENCY-------ASIWKKYSY 51
           ++ +++GAG +G+  A  ++   +  + +E           N Y        S    Y Y
Sbjct: 10  LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYA--YGY 67

Query: 52  DRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASY 111
                     F     +P       F S+ + + +++      ++    R+   V +A Y
Sbjct: 68  ----------FALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARY 117

Query: 112 DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGE 171
            E   +W V   N            + RFL+ A+G  +    PDI+G+ SF       GE
Sbjct: 118 VENDRLWEVTLDN----EEV----VTCRFLISATGPLSASRMPDIKGIDSF------KGE 163

Query: 172 VIHS-------TQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVL 223
             HS            G  + GK V V+G+G +G++I    A  A +  +  R+P    
Sbjct: 164 SFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCT 222

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 42/227 (18%), Positives = 87/227 (38%), Gaps = 52/227 (22%)

Query: 1   MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-----CYASIWKKYSYDRLR 55
           M+E     ++ ++G G  GL TA    ++     I+E          A   +KY YD   
Sbjct: 1   MREDTKVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYD--- 57

Query: 56  LHLAKQFCQLPHLPFPSSYPMF--VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDE 113
                                F  +   + I +L   ++ F+   +I  +++VES     
Sbjct: 58  ------------------VAGFPKIRAQELINNLKEQMAKFD--QTICLEQAVESVEKQA 97

Query: 114 ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE-TTNPFTPDIRGLCSFCSSATGTGEV 172
              ++ +  +         E +YS + +++ +G     P   ++     +     G    
Sbjct: 98  -DGVFKLVTNE--------ETHYS-KTVIITAGNGAFKPRKLELENAEQY----EGKN-- 141

Query: 173 IHSTQY--KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           +H   Y   + + + G+ V ++G G+S ++ AL L   A + S++ R
Sbjct: 142 LH---YFVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHR 185

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 47/218 (21%), Positives = 85/218 (38%), Gaps = 52/218 (23%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERE-----NCYASIWKKYSYDRLRLHLAKQFCQ 64
           V++VGAG +GL     + ++ + +  ++          A   +KY YD            
Sbjct: 8   VLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYD------------ 55

Query: 65  LPHLPFPSSYPMF--VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA 122
                       F  V     ++ L   V+ FN  P        E+   +   +++ V  
Sbjct: 56  ---------VAGFPKVYAKDLVKGLVEQVAPFN--PVYSLGERAETLEREG--DLFKVTT 102

Query: 123 SNLLSPGREIEEYYSGRFLVVASGE-TTNPFTPDIRGLCSFCSSATGTGEVIHSTQY--K 179
           S     G      Y+ + +++A+G     P      G   F     G G  ++   Y  K
Sbjct: 103 SQ----GNA----YTAKAVIIAAGVGAFEPRRIGAPGEREF----EGRG--VY---YAVK 145

Query: 180 NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           +   + GK VL+VG G+S ++ AL+L + A + +L+ R
Sbjct: 146 SKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHR 183

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 49.0 bits (118), Expect = 6e-07
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           + GK V V+G GNSG+E A+DLA      +L+  
Sbjct: 142 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEF 175

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 43/215 (20%), Positives = 81/215 (37%), Gaps = 42/215 (19%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILEREN-----CYASIWKKYSYDRLRLHLAKQFCQ 64
           + ++G G +G+  A    + +I   I+E          A   +K+ YD            
Sbjct: 17  LTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYD------------ 64

Query: 65  LPHLP-FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS 123
              +  FP      V     +E L      +N  P +    +V   +  +    +  + +
Sbjct: 65  ---VAGFPE-----VPAIDLVESLWAQAERYN--PDVVLNETVTKYTKLDD-GTFETRTN 113

Query: 124 NLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKP 183
                       Y  R +++A+G     F P  R L    +    TG  ++    K+ + 
Sbjct: 114 T--------GNVYRSRAVLIAAGLGA--FEP--RKLPQLGNIDHLTGSSVYYAV-KSVED 160

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218
           + GK V++VG G+S ++  + L  +AA  +LV R 
Sbjct: 161 FKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRG 195

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 47/314 (14%), Positives = 94/314 (29%), Gaps = 103/314 (32%)

Query: 12  MVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDR-----------LRLHLAK 60
           ++G+G + +A   CLS +      ++ +  +   W                  L   +  
Sbjct: 158 VLGSGKTWVALDVCLSYK------VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 61  QFCQLPHLPFPSSYPMFVSRAQ-----FIEH---------LDH-----YVSHFNIGPSI- 100
            +         S+  + +   Q      ++          L +       + FN+   I 
Sbjct: 212 NWTSRSD--HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 101 ---RYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE------TTNP 151
              R+++  +  S    T++     S  L+P  E++     ++L     +      TTNP
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLL-KYLDCRPQDLPREVLTTNP 327

Query: 152 FTPDIRGLCSFCSSATGTGEVI--HSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHA 209
                    S         E I      + N K      +                    
Sbjct: 328 R------RLSII------AESIRDGLATWDNWKHVNCDKL-----------------TTI 358

Query: 210 AKTSLVVRSPVHVLSREMVYLGVVLFK---YVPFG-----WVD----TLMVMLSRLV--- 254
            ++SL V  P     R+M +  + +F    ++P       W D     +MV++++L    
Sbjct: 359 IESSLNVLEP--AEYRKM-FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 255 ----YGDLSKYGIP 264
                   S   IP
Sbjct: 416 LVEKQPKESTISIP 429

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           + GK V+ +G GNSG   A+ ++ +    +++  
Sbjct: 153 FKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEY 186

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
           + GK V V+G GNSG+E A+DLA      +L+  +P
Sbjct: 353 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 388

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEI 201
           ++ASG    P TP I G+           +V+        K   G  V ++G G  G + 
Sbjct: 460 ILASG--IVPRTPPIDGI--------DHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDT 509

Query: 202 ALDLANHAAKTSLVV 216
           A+ L+     TS  +
Sbjct: 510 AMYLSQPGESTSQNI 524

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Length = 320

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           Y  + V V+G GN+ +E AL L+N A++  L+ R
Sbjct: 143 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 176

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           +  +++ V+G G+S ME A  L   A   +LV R
Sbjct: 153 FRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHR 186

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           +  K + V+G G+S ME A  L  + +K  ++ R
Sbjct: 157 FRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 190

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* Length = 338

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           +  K + V+G G+S  E A  L  + +K  ++VR
Sbjct: 171 FRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVR 204

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           Y  K V V+G G++ +E A+ LAN   K  L+ R
Sbjct: 141 YKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHR 174

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           Y GK V+V+G G++ +E  + L   A + +++ R
Sbjct: 150 YKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHR 183

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score = 42.9 bits (102), Expect = 7e-05
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           Y  K V V+G G++ +E AL LAN  +K  L+ R
Sbjct: 145 YKNKEVAVLGGGDTALEEALYLANICSKIYLIHR 178

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 15/104 (14%)

Query: 142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNS--GM 199
           + A+G T    T  +    +         +V+       G+   GK V+V    +   G 
Sbjct: 481 ITATGAT--WRTDGVARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGG 538

Query: 200 EIALDLANHAAKTSLVVRSP-----------VHVLSREMVYLGV 232
            +A  LA    + S+V               V+ + R ++  GV
Sbjct: 539 VVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGV 582

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 8  VEVIMVGAGTSGLATAACLSLQSIPYVILER 38
          V+V++VGAG  GL+TA  L+ Q +  +++ER
Sbjct: 6  VDVLVVGAGLGGLSTAMFLARQGVRVLVVER 36

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
           +  + V V+G G+S +E A  L++++ K  L+ R
Sbjct: 152 FKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHR 185

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 8  VEVIMVGAGTSGLATAACLSLQSIPYVILER 38
           +V++VG G  GL  A  L    +  ++LE+
Sbjct: 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEK 80

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 8/31 (25%), Positives = 21/31 (67%)

Query: 8  VEVIMVGAGTSGLATAACLSLQSIPYVILER 38
           +V+++G G  G+A A  L+ + + ++++E+
Sbjct: 27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQ 57

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 4  QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILER 38
            +   VI+VGAG +G+  A  L L  +  V+LER
Sbjct: 8  HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLER 42

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 8  VEVIMVGAGTSGLATAACLSLQSIPYVILER 38
            VI+VGAG +GL  A  L L  +  ++LE+
Sbjct: 13 ASVIVVGAGPAGLMLAGELRLGGVDVMVLEQ 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	303
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	100.0
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	100.0
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	100.0
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	100.0
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	100.0
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.97
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.97
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.94
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.93
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.93
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.92
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.92
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.92
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.92
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.92
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.92
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.91
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.91
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.91
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.91
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.9
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.9
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.9
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.9
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.9
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.89
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.89
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.89
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.89
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.87
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.87
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.86
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.86
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.86
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.86
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.86
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.86
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.85
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.85
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.85
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.85
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.85
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.85
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.85
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.85
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.85
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.85
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.84
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.84
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.84
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.84
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.84
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.84
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.83
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.83
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.83
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.83
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.83
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.83
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.83
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.83
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.83
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.83
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.83
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.82
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.82
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.82
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.82
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.82
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.82
4dna_A	463	Probable glutathione reductase; structural genomic	99.82
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.81
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.81
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.81
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.81
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.81
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.8
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.8
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.8
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.79
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.79
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.78
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.75
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.75
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.74
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.74
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.69
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.67
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.67
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.63
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.6
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.44
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.43
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.41
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.41
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.4
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.39
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.37
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.35
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.35
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.34
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.34
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.34
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.32
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.32
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.31
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.3
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.3
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.3
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.29
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.29
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.28
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.28
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.28
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.25
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.25
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.25
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.24
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.23
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.22
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.22
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.22
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.21
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.21
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.21
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.21
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.2
3dme_A	369	Conserved exported protein; structural genomics, P	99.2
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.18
3atr_A	453	Conserved archaeal protein; saturating double bond	99.18
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.17
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.17
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.16
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.15
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.14
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.13
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.13
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.1
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.09
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.09
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.09
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.08
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.07
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.06
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.06
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.04
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.02
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.01
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.0
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.0
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.99
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.96
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.95
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.94
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.93
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.92
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.91
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.9
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.89
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.89
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.85
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.84
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.83
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.81
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.8
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.79
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.78
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.78
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.78
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.78
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.77
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.76
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.75
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.74
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.72
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.72
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.72
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.71
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.7
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.68
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.67
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.66
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.65
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.65
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.63
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.63
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.63
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.62
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.62
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.61
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.61
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.6
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.6
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.59
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.59
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.59
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.59
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.59
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.58
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.58
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.58
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.58
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.58
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.58
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.57
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.57
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.57
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.57
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.57
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.56
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.56
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.55
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.54
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.54
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.53
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.52
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.51
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.5
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.46
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.44
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.44
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.44
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.43
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.42
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.42
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.41
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.38
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.37
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.37
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.37
4dna_A	463	Probable glutathione reductase; structural genomic	98.37
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.35
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.32
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.31
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.31
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.3
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.3
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.3
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.29
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.29
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.29
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.29
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.26
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.25
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.24
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.23
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.23
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.23
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.21
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.21
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.19
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.19
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.19
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.17
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.17
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.15
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.15
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.14
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.13
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.13
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.11
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.09
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.04
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.03
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.03
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.99
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.99
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.96
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.95
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.9
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.78
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.78
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.77
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.73
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.62
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.62
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.61
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.6
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.58
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.56
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.54
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.53
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.52
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.47
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.4
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.37
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.36
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.36
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.35
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.29
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.27
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.26
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.19
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.14
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.12
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.04
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.03
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.94
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	96.9
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.83
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.78
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.74
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.72
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.56
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.52
2cul_A	232	Glucose-inhibited division protein A-related PROT	96.43
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	96.43
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.38
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.35
4fk1_A	304	Putative thioredoxin reductase; structural genomic	96.31
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.25
4hb9_A	412	Similarities with probable monooxygenase; flavin,	96.12
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.06
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	96.05
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.04
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.03
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.03
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	96.02
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.02
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	95.93
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	95.87
2bry_A	497	NEDD9 interacting protein with calponin homology a	95.85
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.84
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.81
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	95.74
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	95.72
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.71
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	95.7
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	95.7
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.68
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	95.65
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	95.63
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.61
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.6
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	95.59
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	95.59
3dme_A	369	Conserved exported protein; structural genomics, P	95.56
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.56
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	95.54
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	95.52
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	95.51
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.48
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	95.48
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	95.46
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	95.39
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.38
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.36
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.36
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	95.35
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	95.35
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	95.34
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	95.31
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	95.31
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	95.31
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	95.27
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	95.27
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.27
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.26
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.25
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	95.22
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.21
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.21
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.2
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	95.19
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.18
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	95.14
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	95.13
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.12
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	95.11
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.1
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	95.1
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	95.1
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.1
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.1
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	95.09
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	95.08
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.08
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.05
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	95.01
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.01
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	95.01
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	94.99
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	94.98
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	94.97
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.97
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	94.94
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.94
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.94
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.92
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.92
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.9
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	94.89
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.88
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	94.88
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.88
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	94.86
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	94.85
3atr_A	453	Conserved archaeal protein; saturating double bond	94.84
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	94.83
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	94.8
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	94.79
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	94.79
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	94.79
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.78
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	94.78
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	94.74
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.73
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	94.71
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.69
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	94.69
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.67
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	94.65
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	94.64
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	94.62
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.62
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	94.61
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	94.59
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	94.58
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.58
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	94.58
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	94.58
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	94.57
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	94.56
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.55
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	94.55
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	94.54
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	94.53
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.52
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	94.52
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	94.51
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	94.51
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.49
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.48
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	94.47
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	94.46
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	94.45
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	94.44
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	94.39
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	94.36
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	94.36
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	94.35
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	94.35
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.34
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.33
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	94.33
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	94.33
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.3
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	94.3
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	94.28
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.27
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	94.27
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	94.26
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	94.26
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.25
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.18
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	94.15
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	94.13
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.1
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	94.1
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	94.09
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	94.08
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.08
3tl2_A	315	Malate dehydrogenase; center for structural genomi	94.08
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	94.07
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	94.06
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.05
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	94.03
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	94.03
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.01
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	94.0
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	93.98
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	93.96
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	93.96
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	93.95
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	93.94
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	93.94
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	93.92
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.92
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	93.9
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	93.89
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.88
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	93.88
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	93.85
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.83
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	93.83
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.83
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.82
4ezb_A	317	Uncharacterized conserved protein; structural geno	93.8
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	93.8
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.8
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	93.79
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	93.79
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	93.79
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	93.72
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	93.69
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.65
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	93.65
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	93.63
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.61

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=100.00  E-value=1.4e-35  Score=274.79  Aligned_cols=208  Identities=22%  Similarity=0.414  Sum_probs=184.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHh-hCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCC----CCCCCCCCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLS-LQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP----FPSSYPMFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~-~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~   81 (303)
                      .+||+|||||++|+++|..|+ +.|++|+|+|+++.+||+|..+.|+.+.++.+...+.+...+    .+.+...++++.
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~   87 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQP   87 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHH
Confidence            479999999999999999999 899999999999999999999899999998887777665331    112334567899


Q ss_pred             HHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccc
Q 022090           82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS  161 (303)
Q Consensus        82 ~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~  161 (303)
                      ++.+|+.+.++++++..+++++++|++++.++..+.|.|.+.++       .+ +.||+||+|||.++.|..|++||++.
T Consensus        88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G-------~~-i~ad~lV~AtG~~s~p~~p~ipG~~~  159 (540)
T 3gwf_A           88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHG-------EV-YRAKYVVNAVGLLSAINFPNLPGLDT  159 (540)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTS-------CE-EEEEEEEECCCSCCSBCCCCCTTGGG
T ss_pred             HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCC-------CE-EEeCEEEECCcccccCCCCCCCCccc
Confidence            99999999999999866779999999999988667899998765       56 89999999999988999999999999


Q ss_pred             cccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH
Q 022090          162 FCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       162 ~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~  228 (303)
                      |      .|..+|+..+.......+++|+|||+|.+|+|+|..|++.+.+||+++|++.|++|..+.
T Consensus       160 f------~g~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~  220 (540)
T 3gwf_A          160 F------EGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNR  220 (540)
T ss_dssp             C------CSEEEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCC
T ss_pred             c------CCCEEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccC
Confidence            9      999999999988777889999999999999999999999999999999999889997654

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=100.00  E-value=2.5e-35  Score=273.52  Aligned_cols=208  Identities=27%  Similarity=0.444  Sum_probs=183.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCC----CCCCCCCCCCHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP----FPSSYPMFVSRAQ   82 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~   82 (303)
                      .+||+|||||++|+++|..|++.|++|+|||+++.+||+|..+.|+.+.++.+...+.++..+    .+.....++++.+
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e  100 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE  100 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence            469999999999999999999999999999999999999998889999888887777665431    1233456788999


Q ss_pred             HHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccc
Q 022090           83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSF  162 (303)
Q Consensus        83 l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~  162 (303)
                      +.+|+.+.++++++..+++++++|++++.++..+.|+|.+.++       .+ +.||+||+|||..+.|..|++||.+.|
T Consensus       101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G-------~~-i~ad~lV~AtG~~s~p~~p~ipG~~~f  172 (549)
T 4ap3_A          101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRG-------DE-VSARFLVVAAGPLSNANTPAFDGLDRF  172 (549)
T ss_dssp             HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTC-------CE-EEEEEEEECCCSEEECCCCCCTTGGGC
T ss_pred             HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCC-------CE-EEeCEEEECcCCCCCCCCCCCCCcccC
Confidence            9999999999999876779999999999988777999998765       57 899999999998889999999999999


Q ss_pred             ccCCCCCccEEecccCC-CCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH
Q 022090          163 CSSATGTGEVIHSTQYK-NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       163 ~~~~~~~g~~~~~~~~~-~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~  228 (303)
                            .|..+|+..+. +...+.+++|+|||+|.+|+|+|..|++.+.+||+++|++.|++|..+.
T Consensus       173 ------~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~  233 (549)
T 4ap3_A          173 ------TGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNV  233 (549)
T ss_dssp             ------CSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC--
T ss_pred             ------CCceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCC
Confidence                  99999999988 5677789999999999999999999999999999999999999998665

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=100.00  E-value=2.5e-35  Score=273.31  Aligned_cols=209  Identities=23%  Similarity=0.372  Sum_probs=180.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCC----CCCCCCCCCHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF----PSSYPMFVSRA   81 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   81 (303)
                      ..+||+|||||++|+++|..|++.|++|+|||+++.+||+|..+.|+++.++.+...+.+...+.    ......++++.
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~   87 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQP   87 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHH
Confidence            35799999999999999999999999999999999999999999999998887766655543221    22334677899


Q ss_pred             HHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccc
Q 022090           82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS  161 (303)
Q Consensus        82 ~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~  161 (303)
                      ++.+|+.+.++++++..+++++++|++++.++..+.|.|.+.++       .+ +.||+||+|||..+.|..|++||.+.
T Consensus        88 ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G-------~~-~~ad~lV~AtG~~s~p~~p~ipG~~~  159 (545)
T 3uox_A           88 EMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNE-------EV-VTCRFLISATGPLSASRMPDIKGIDS  159 (545)
T ss_dssp             HHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTT-------EE-EEEEEEEECCCSCBC---CCCTTGGG
T ss_pred             HHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCC-------CE-EEeCEEEECcCCCCCCcCCCCCCccc
Confidence            99999999999999877779999999999987677899998765       57 89999999999988999999999999


Q ss_pred             cccCCCCCccEEecccCCCC-------CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH
Q 022090          162 FCSSATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       162 ~~~~~~~~g~~~~~~~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~  228 (303)
                      |      .|..+|+..+...       ....+++|+|||+|.+|+|+|..|++.+.+||+++|++.|++|..+.
T Consensus       160 f------~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~  227 (545)
T 3uox_A          160 F------KGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNS  227 (545)
T ss_dssp             C------CSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCC
T ss_pred             c------CCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcC
Confidence            9      9999999988775       66788999999999999999999999999999999999889987544

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=100.00  E-value=2.7e-34  Score=267.10  Aligned_cols=208  Identities=24%  Similarity=0.432  Sum_probs=179.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCC----CCCCCCCCCHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF----PSSYPMFVSRA   81 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   81 (303)
                      ..+||+|||||++|+++|..|++.|++|+|+|+++.+||+|..++|+++.++.+...+.+...+.    ......++++.
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~   94 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQP   94 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHH
Confidence            35799999999999999999999999999999999999999988899888777666555543220    11223577899


Q ss_pred             HHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccc
Q 022090           82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS  161 (303)
Q Consensus        82 ~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~  161 (303)
                      ++.+|+..+++++++..+++++++|++++.+++.+.|+|.+.++       .+ ++||+||+|||.++.|..|++||++.
T Consensus        95 ~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G-------~~-~~ad~vV~AtG~~s~p~~p~i~G~~~  166 (542)
T 1w4x_A           95 EILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHG-------DR-IRARYLIMASGQLSVPQLPNFPGLKD  166 (542)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTC-------CE-EEEEEEEECCCSCCCCCCCCCTTGGG
T ss_pred             HHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCC-------CE-EEeCEEEECcCCCCCCCCCCCCCccc
Confidence            99999999999998877789999999999987667899988764       46 89999999999988999999999998


Q ss_pred             cccCCCCCccEEecccCC-CCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhh
Q 022090          162 FCSSATGTGEVIHSTQYK-NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (303)
Q Consensus       162 ~~~~~~~~g~~~~~~~~~-~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~  227 (303)
                      |      .|.++|+..+. +...+.+++|+|||+|.+|+|++..+++.+.+||++.|++.+++|+.+
T Consensus       167 f------~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~  227 (542)
T 1w4x_A          167 F------AGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARN  227 (542)
T ss_dssp             C------CSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCC
T ss_pred             C------CCceEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCC
Confidence            9      99999999887 445678999999999999999999999999999999999988888643

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=100.00  E-value=1.3e-32  Score=251.13  Aligned_cols=207  Identities=19%  Similarity=0.376  Sum_probs=175.0

Q ss_pred             CcEEEECCcHHHHHHHHHHhh---CCCC---eEEEecCCCCCCccCcC---------------CCCceEEecCcccccCC
Q 022090            8 VEVIMVGAGTSGLATAACLSL---QSIP---YVILERENCYASIWKKY---------------SYDRLRLHLAKQFCQLP   66 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~---~g~~---v~iie~~~~~gg~w~~~---------------~~~~~~~~~~~~~~~~~   66 (303)
                      +||+|||||++|+++|..|++   .|.+   |+|||+++.+||.|.+.               .|+.+..+.+...+.++
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            699999999999999999999   9999   99999999999999863               34445555555666666


Q ss_pred             CCCCCCC----CCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEE
Q 022090           67 HLPFPSS----YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV  142 (303)
Q Consensus        67 ~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI  142 (303)
                      +++++..    .+.++++.++.+|+.++++++++..+++++++|++++..++.+.|.|++.++.++  +..+ +.||+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g--~~~~-~~~d~VV  159 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTD--TIYS-EEFDYVV  159 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTT--EEEE-EEESEEE
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCC--ceEE-EEcCEEE
Confidence            6655432    2677889999999999999999885569999999999887556899998764222  3356 8999999


Q ss_pred             EccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeee
Q 022090          143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV  222 (303)
Q Consensus       143 lAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~  222 (303)
                      +|||.++.|+.|.+||.+.|      .|.++|+.++.+...+.+++|+|||+|.+|+|+|..|++.|.+|++++|++ .+
T Consensus       160 vAtG~~s~p~~p~ipG~~~~------~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~-~~  232 (464)
T 2xve_A          160 CCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRT-AP  232 (464)
T ss_dssp             ECCCSSSSBCCCCCBTTTTC------CSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSS-CC
T ss_pred             ECCCCCCCCccCCCCCcccC------CceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECC-CC
Confidence            99999999999999999988      899999999988767789999999999999999999999999999999987 44


Q ss_pred             ee
Q 022090          223 LS  224 (303)
Q Consensus       223 lp  224 (303)
                      ++
T Consensus       233 ~~  234 (464)
T 2xve_A          233 MG  234 (464)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.97  E-value=9.8e-31  Score=237.96  Aligned_cols=206  Identities=21%  Similarity=0.305  Sum_probs=166.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCCCCCCccCcCCC--------------------------------
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSY--------------------------------   51 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~~~~--------------------------------   51 (303)
                      ..+||+|||||++|+++|..|++.|.  +|+|||+.+.+||.|.....                                
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~   84 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   84 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence            45899999999999999999999999  99999999999999986432                                


Q ss_pred             -CceEEecCcccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCc
Q 022090           52 -DRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR  130 (303)
Q Consensus        52 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~  130 (303)
                       ..+..+.+...+.+++++++...+.++++.++.+|+.+++++++.  .++++++|++++..+  +.|.|++.+..++  
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~i~~~t~V~~v~~~~--~~~~V~~~~~~~G--  158 (447)
T 2gv8_A           85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLP--FIKLATDVLDIEKKD--GSWVVTYKGTKAG--  158 (447)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGG--GEECSEEEEEEEEET--TEEEEEEEESSTT--
T ss_pred             hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhC--eEEeCCEEEEEEeCC--CeEEEEEeecCCC--
Confidence             112222233344566677777777888999999999999998754  458999999998765  6799988762211  


Q ss_pred             e-eEEEEeeCEEEEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhcc
Q 022090          131 E-IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHA  209 (303)
Q Consensus       131 ~-~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g  209 (303)
                      + ..+ +.||+||+|||+++.|++|.+||.+.|..  ...|.++|+..+.+...+.+++|+|||+|++|+|+|..|++.+
T Consensus       159 ~~~~~-~~~d~VVvAtG~~s~p~~p~i~G~~~~~~--~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~~~  235 (447)
T 2gv8_A          159 SPISK-DIFDAVSICNGHYEVPYIPNIKGLDEYAK--AVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVA  235 (447)
T ss_dssp             CCEEE-EEESEEEECCCSSSSBCBCCCBTHHHHHH--HSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTS
T ss_pred             CeeEE-EEeCEEEECCCCCCCCCCCCCCChhhhhc--cCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHHHh
Confidence            2 237 89999999999888999999999875300  0046789999998877778999999999999999999999999


Q ss_pred             Cc-eEEEeecCe
Q 022090          210 AK-TSLVVRSPV  220 (303)
Q Consensus       210 ~~-vt~~~r~~~  220 (303)
                      .+ ||+++|++.
T Consensus       236 ~~~V~l~~r~~~  247 (447)
T 2gv8_A          236 KHPIYQSLLGGG  247 (447)
T ss_dssp             CSSEEEECTTCC
T ss_pred             CCcEEEEeCCCC
Confidence            99 999999874

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=2.9e-30  Score=227.45  Aligned_cols=199  Identities=26%  Similarity=0.498  Sum_probs=177.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ++||+|||||++|+++|..|+++|++|+|+|+++.+||.|... |+.+.+..+...+.++.++.+.....++++.++.+|
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHA-WHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAY   81 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGS-CTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCC-CCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHH
Confidence            3799999999999999999999999999999999999999865 888888888888888888877777788899999999


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEE-EEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      +.++++++++..  +++++|++++.++  +.|. |.+.+        .+ +.||+||+|||.++.|..|.+||.+.+   
T Consensus        82 l~~~~~~~~~~~--~~~~~v~~i~~~~--~~~~~v~~~~--------g~-~~~d~vV~AtG~~~~~~~~~~~g~~~~---  145 (357)
T 4a9w_A           82 LAQYEQKYALPV--LRPIRVQRVSHFG--ERLRVVARDG--------RQ-WLARAVISATGTWGEAYTPEYQGLESF---  145 (357)
T ss_dssp             HHHHHHHTTCCE--ECSCCEEEEEEET--TEEEEEETTS--------CE-EEEEEEEECCCSGGGBCCCCCTTGGGC---
T ss_pred             HHHHHHHcCCEE--EcCCEEEEEEECC--CcEEEEEeCC--------CE-EEeCEEEECCCCCCCCCCCCCCCcccc---
Confidence            999999999875  8999999999876  6788 77654        36 899999999998888889999999888   


Q ss_pred             CCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehh
Q 022090          166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE  226 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~  226 (303)
                         .+..+|+..+.......+++++|||+|.+|+|+|..|++.+ +|++++|++.+++|..
T Consensus       146 ---~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~  202 (357)
T 4a9w_A          146 ---AGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADD  202 (357)
T ss_dssp             ---CSEEEEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTT
T ss_pred             ---CCcEEEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchh
Confidence               88899999998877778899999999999999999999998 6999999965888865

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.94  E-value=1.6e-26  Score=212.67  Aligned_cols=200  Identities=23%  Similarity=0.343  Sum_probs=150.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC--------------CCeEEEecCCCCCCccCcCC-CCceEEecC--cccccCCC--
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS--------------IPYVILERENCYASIWKKYS-YDRLRLHLA--KQFCQLPH--   67 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g--------------~~v~iie~~~~~gg~w~~~~-~~~~~~~~~--~~~~~~~~--   67 (303)
                      .+||+|||+||+||++|..|.+.|              ...+.+|+.+.++  |+..+ +++..++.+  +.+..+.+  
T Consensus        39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~--Wh~g~~~p~~~~q~~fl~Dlvtl~~P~  116 (501)
T 4b63_A           39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFA--WHSGMLVPGSKMQISFIKDLATLRDPR  116 (501)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCC--SSGGGCCTTCBCSSCGGGSSSTTTCTT
T ss_pred             cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCC--cCCCCCCCCccccccchhhhccccCCC
Confidence            479999999999999999998754              3567778877665  76543 555554433  12211111  


Q ss_pred             C---------------CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCC------CeEEEEEeecC
Q 022090           68 L---------------PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT------NMWNVKASNLL  126 (303)
Q Consensus        68 ~---------------~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~------~~~~v~~~~~~  126 (303)
                      .               +++.....|+++.++.+|+++++++++.  +++|+++|+++++.+.+      +.|+|++.++.
T Consensus       117 s~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~--~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~  194 (501)
T 4b63_A          117 SSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSD--VVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVE  194 (501)
T ss_dssp             CTTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGG--GEEESEEEEEEEEECSSTTSSCBCEEEEEEEETT
T ss_pred             CccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCC--ceEcceEEEeeccccccccccccceEEEEEecCC
Confidence            1               1122335678999999999999998864  45999999999986633      35999998876


Q ss_pred             CCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCC------CCCCCCCeEEEECCCccHHH
Q 022090          127 SPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKN------GKPYGGKNVLVVGSGNSGME  200 (303)
Q Consensus       127 ~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~v~ViG~G~~g~e  200 (303)
                      ++  +..+ +.|+.||+|||  ..|.+|   +...+      .|.++|+.+|..      ...+++|+|+|||+|+||+|
T Consensus       195 ~g--~~~~-~~ar~vVlatG--~~P~iP---~~~~~------~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~e  260 (501)
T 4b63_A          195 TG--EISA-RRTRKVVIAIG--GTAKMP---SGLPQ------DPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAE  260 (501)
T ss_dssp             TC--CEEE-EEEEEEEECCC--CEECCC---TTSCC------CTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHH
T ss_pred             Cc--eEEE-EEeCEEEECcC--CCCCCC---CCCCC------CcceeeccccccchhhccccccCCcEEEEECCcHHHHH
Confidence            55  4467 89999999999  555544   44556      788999999864      45678999999999999999


Q ss_pred             HHHHHhhc--cCceEEEeecCeeeeeh
Q 022090          201 IALDLANH--AAKTSLVVRSPVHVLSR  225 (303)
Q Consensus       201 ~a~~l~~~--g~~vt~~~r~~~~~lp~  225 (303)
                      ++.+|++.  +.+|+++.|++ ++.|.
T Consensus       261 i~~~L~~~~~~~~v~~~~R~~-~~~p~  286 (501)
T 4b63_A          261 IFHDLQKRYPNSRTTLIMRDS-AMRPS  286 (501)
T ss_dssp             HHHHHHHHSTTCEEEEECSSS-SCCBC
T ss_pred             HHHHHHhcCCCceEEEEeCCC-ccccc
Confidence            99999876  67899999998 55554

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.93  E-value=7.7e-26  Score=196.12  Aligned_cols=178  Identities=17%  Similarity=0.271  Sum_probs=128.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .|||+||||||||++||..|+++|++|+|||++. +||.+.+ .+.+           .++.+       ......++..
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~-~gG~~~~~~~i~-----------~~p~~-------~~~~~~~~~~   66 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI-PGGQMANTEEVE-----------NFPGF-------EMITGPDLST   66 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTGGGGGCSCBC-----------CSTTC-------SSBCHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCCeeecccccC-----------CcCCc-------cccchHHHHH
Confidence            5899999999999999999999999999999975 5554332 2111           11111       1234566777


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      .......+.....  ..+..+.......   .. +...++       .+ ++||+||+|||  +.|+.|++||.+.+   
T Consensus        67 ~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~-~~~~~~-------~~-~~~d~liiAtG--s~~~~~~ipG~~~~---  127 (312)
T 4gcm_A           67 KMFEHAKKFGAVY--QYGDIKSVEDKGE---YK-VINFGN-------KE-LTAKAVIIATG--AEYKKIGVPGEQEL---  127 (312)
T ss_dssp             HHHHHHHHTTCEE--EECCCCEEEECSS---CE-EEECSS-------CE-EEEEEEEECCC--EEECCCCCTTTTTT---
T ss_pred             HHHHHHhhccccc--cceeeeeeeeeec---ce-eeccCC-------eE-EEeceeEEccc--CccCcCCCCChhhh---
Confidence            6666666665433  4444343333222   22 233322       57 89999999999  88999999998877   


Q ss_pred             CCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehh
Q 022090          166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE  226 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~  226 (303)
                         .+..+++....+.....+++++|||+|++|+|+|..|++.|.+||+++|++ .++|..
T Consensus       128 ---~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~~~~~  184 (312)
T 4gcm_A          128 ---GGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRD-ELRAQR  184 (312)
T ss_dssp             ---BTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS-SCCSCH
T ss_pred             ---CCccEEeeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccc-ccCcch
Confidence               666566655555455678999999999999999999999999999999998 666653

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.93  E-value=6.9e-26  Score=197.67  Aligned_cols=190  Identities=18%  Similarity=0.334  Sum_probs=150.5

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCH
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSR   80 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (303)
                      |......+||+|||||++|+++|..|++.|++|+|+|+++.+||.|... |+...+.      .++.++       ..+.
T Consensus         1 M~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~-~~~~~~~------~~~~~~-------~~~~   66 (332)
T 3lzw_A            1 MREDTKVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSAL-YPEKYIY------DVAGFP-------KIRA   66 (332)
T ss_dssp             CEEEEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHH-CTTSEEC------CSTTCS-------SEEH
T ss_pred             CCCCCccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhc-CCCceEe------ccCCCC-------CCCH
Confidence            4333345799999999999999999999999999999999999999542 3333221      111111       1246


Q ss_pred             HHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC-CCCCCCCCCc
Q 022090           81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT-NPFTPDIRGL  159 (303)
Q Consensus        81 ~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~-~p~~p~~~g~  159 (303)
                      .++..++.++++++++..  +++++|++++... .+.|.|.+.+        .+ +.||+||+|||..+ .|..|.+||.
T Consensus        67 ~~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~-~~~~~v~~~~--------g~-~~~d~vVlAtG~~~~~p~~~~~~g~  134 (332)
T 3lzw_A           67 QELINNLKEQMAKFDQTI--CLEQAVESVEKQA-DGVFKLVTNE--------ET-HYSKTVIITAGNGAFKPRKLELENA  134 (332)
T ss_dssp             HHHHHHHHHHHTTSCCEE--ECSCCEEEEEECT-TSCEEEEESS--------EE-EEEEEEEECCTTSCCEECCCCCTTG
T ss_pred             HHHHHHHHHHHHHhCCcE--EccCEEEEEEECC-CCcEEEEECC--------CE-EEeCEEEECCCCCcCCCCCCCCCCh
Confidence            889999999998887554  8899999998876 2479998876        46 79999999999533 7888999999


Q ss_pred             cccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeee
Q 022090          160 CSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (303)
Q Consensus       160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp  224 (303)
                      +.|      .+..+|+ .+.+...+.+++++|||+|.+|+|+|..|.+.+.+|++++|.+ .+.+
T Consensus       135 ~~~------~g~~~~~-~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~-~~~~  191 (332)
T 3lzw_A          135 EQY------EGKNLHY-FVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRD-KFRA  191 (332)
T ss_dssp             GGG------BTTTEES-SCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSS-SCSS
T ss_pred             hhc------cCceEEE-ecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecC-cCCc
Confidence            887      6666777 5655555678999999999999999999999999999999998 4433

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.92  E-value=4.8e-25  Score=191.04  Aligned_cols=181  Identities=15%  Similarity=0.236  Sum_probs=130.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .|||+||||||||++||..|+++|++|+|||+....|.++....+....+      ..++      .++...+..++.++
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i------~~~~------g~~~~i~~~~l~~~   71 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTII------ENFP------GFPNGIDGNELMMN   71 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEE------CCST------TCTTCEEHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHh------hhcc------CCcccCCHHHHHHH
Confidence            58999999999999999999999999999999864333322111111111      1111      12334467789999


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~  166 (303)
                      +.+.+++++...   ....+.......  ..+.+.+.++       .+ +.||+||+|||  +.|+.|++||.+.+    
T Consensus        72 ~~~~~~~~~~~~---~~~~v~~~~~~~--~~~~~~~~~~-------~~-~~~~~liiATG--~~~~~~~ipG~~~~----  132 (314)
T 4a5l_A           72 MRTQSEKYGTTI---ITETIDHVDFST--QPFKLFTEEG-------KE-VLTKSVIIATG--ATAKRMHVPGEDKY----  132 (314)
T ss_dssp             HHHHHHHTTCEE---ECCCEEEEECSS--SSEEEEETTC-------CE-EEEEEEEECCC--EEECCCCCTTHHHH----
T ss_pred             HHHHHhhcCcEE---EEeEEEEeecCC--CceEEEECCC-------eE-EEEeEEEEccc--ccccccCCCccccc----
Confidence            999998887653   334455554433  4455555543       57 89999999999  78889999998766    


Q ss_pred             CCCccEEecccCCCC--CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCe
Q 022090          167 TGTGEVIHSTQYKNG--KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (303)
Q Consensus       167 ~~~g~~~~~~~~~~~--~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~  220 (303)
                        .+..++...+...  ....+++++|||+|.+|+|+|..|+++|.+||+++|.+.
T Consensus       133 --~~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          133 --WQNGVSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             --BTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             --cccceeeehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence              5544555444332  234679999999999999999999999999999999873

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.92  E-value=9.2e-25  Score=191.03  Aligned_cols=185  Identities=22%  Similarity=0.378  Sum_probs=141.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .++||+|||||++|+++|..|++.|++|+|||+++..||.|... ++...+      ..++.++       .....++.+
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~-~~~~~~------~~~~~~~-------~~~~~~~~~   69 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTAL-YPEKYI------YDVAGFP-------KVYAKDLVK   69 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHT-CTTSEE------CCSTTCS-------SEEHHHHHH
T ss_pred             CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeecc-CCCcee------eccCCCC-------CCCHHHHHH
Confidence            35799999999999999999999999999999999999988643 332211      1111111       134678889


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC-CCCCCCCCCcccccc
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT-NPFTPDIRGLCSFCS  164 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~-~p~~p~~~g~~~~~~  164 (303)
                      ++.+.++++++..  +++++|++++.++  +.|.|.+.++       .+ +.||+||+|||..+ .|..|+++|.+.+  
T Consensus        70 ~l~~~~~~~~~~~--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-~~~~~lv~AtG~~~~~p~~~~i~g~~~~--  135 (335)
T 2zbw_A           70 GLVEQVAPFNPVY--SLGERAETLEREG--DLFKVTTSQG-------NA-YTAKAVIIAAGVGAFEPRRIGAPGEREF--  135 (335)
T ss_dssp             HHHHHHGGGCCEE--EESCCEEEEEEET--TEEEEEETTS-------CE-EEEEEEEECCTTSEEEECCCCCTTTTTT--
T ss_pred             HHHHHHHHcCCEE--EeCCEEEEEEECC--CEEEEEECCC-------CE-EEeCEEEECCCCCCCCCCCCCCCChhhc--
Confidence            9998888888654  8899999998876  4788877653       46 89999999999543 5778888888766  


Q ss_pred             CCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeee
Q 022090          165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (303)
Q Consensus       165 ~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp  224 (303)
                          .+..++.. +.+.....+++++|||+|.+|+|+|..|++.|.+|++++|++ .+++
T Consensus       136 ----~~~~~~~~-~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~-~~~~  189 (335)
T 2zbw_A          136 ----EGRGVYYA-VKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRP-QFRA  189 (335)
T ss_dssp             ----BTTTEESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSS-SCCS
T ss_pred             ----cCcEEEEe-cCchhhcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCC-ccCc
Confidence                54333332 223334568999999999999999999999999999999998 4444

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.92  E-value=1.6e-24  Score=188.89  Aligned_cols=177  Identities=20%  Similarity=0.334  Sum_probs=136.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .+||+|||||++|+++|..|++.|++|+|+|++ ..||.|.....          ...++.      ++...++.++.++
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~----------~~~~~~------~~~~~~~~~~~~~   70 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEE----------VENFPG------FPEPIAGMELAQR   70 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSC----------BCCSTT------CSSCBCHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccccccc----------cccCCC------CCCCCCHHHHHHH
Confidence            579999999999999999999999999999998 68888764210          001111      1223467789999


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCC-eEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATN-MWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      +.+.++++++..  ++ .+|++++.....+ .|.|...++       .+ +.||+||+|||  +.|..|.+||.+.+   
T Consensus        71 l~~~~~~~gv~~--~~-~~v~~i~~~~~~~~~~~v~~~~g-------~~-~~~~~vv~AtG--~~~~~~~i~g~~~~---  134 (325)
T 2q7v_A           71 MHQQAEKFGAKV--EM-DEVQGVQHDATSHPYPFTVRGYN-------GE-YRAKAVILATG--ADPRKLGIPGEDNF---  134 (325)
T ss_dssp             HHHHHHHTTCEE--EE-CCEEEEEECTTSSSCCEEEEESS-------CE-EEEEEEEECCC--EEECCCCCTTTTTT---
T ss_pred             HHHHHHHcCCEE--Ee-eeEEEEEeccCCCceEEEEECCC-------CE-EEeCEEEECcC--CCcCCCCCCChhhc---
Confidence            999999988765  55 5888888762112 377777654       46 89999999999  67788889998776   


Q ss_pred             CCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                         .+..+|+..+.+.....+++++|||+|.+|+|+|..|.+.+.+||+++|++
T Consensus       135 ---~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  185 (325)
T 2q7v_A          135 ---WGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRD  185 (325)
T ss_dssp             ---BTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             ---cCceEEEeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCC
Confidence               555566544433344567999999999999999999999999999999998

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.92  E-value=1.1e-24  Score=189.11  Aligned_cols=177  Identities=16%  Similarity=0.232  Sum_probs=140.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ++||+|||||++|+++|..|++.|++|+|+|++  .||.|.....          ...++.+       ......++.++
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~----------~~~~~~~-------~~~~~~~~~~~   75 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGI----------VDDYLGL-------IEIQASDMIKV   75 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCE----------ECCSTTS-------TTEEHHHHHHH
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeeccccc----------ccccCCC-------CCCCHHHHHHH
Confidence            469999999999999999999999999999998  8888875200          0011111       11456789999


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~  166 (303)
                      +.+++++++++.  ++ ++|++++.++  +.|.+.+.++       .+ +.||+||+|||  +.|..|.+||.+.+    
T Consensus        76 ~~~~~~~~~v~~--~~-~~v~~i~~~~--~~~~v~~~~g-------~~-~~~d~lvlAtG--~~~~~~~i~g~~~~----  136 (323)
T 3f8d_A           76 FNKHIEKYEVPV--LL-DIVEKIENRG--DEFVVKTKRK-------GE-FKADSVILGIG--VKRRKLGVPGEQEF----  136 (323)
T ss_dssp             HHHHHHTTTCCE--EE-SCEEEEEEC----CEEEEESSS-------CE-EEEEEEEECCC--CEECCCCCTTTTTT----
T ss_pred             HHHHHHHcCCEE--EE-EEEEEEEecC--CEEEEEECCC-------CE-EEcCEEEECcC--CCCccCCCCchhhh----
Confidence            999999988776  66 8899998765  5688888764       46 89999999999  66888899998877    


Q ss_pred             CCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeee
Q 022090          167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (303)
Q Consensus       167 ~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp  224 (303)
                        .+..+|...+.+.....+++++|||+|.+|+|+|..|.+.+.+|++++|.+ .+++
T Consensus       137 --~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~-~~~~  191 (323)
T 3f8d_A          137 --AGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRD-TFKA  191 (323)
T ss_dssp             --BTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSS-SCCS
T ss_pred             --cCCceEEeccCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCC-CCCc
Confidence              666666555544455678999999999999999999999999999999998 5554

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.92  E-value=3.4e-24  Score=195.70  Aligned_cols=201  Identities=23%  Similarity=0.389  Sum_probs=141.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC-----CCeEEEecCCCCCCccCcCCC-CceEEecC--cccccC--CCCCC------
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS-----IPYVILERENCYASIWKKYSY-DRLRLHLA--KQFCQL--PHLPF------   70 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g-----~~v~iie~~~~~gg~w~~~~~-~~~~~~~~--~~~~~~--~~~~~------   70 (303)
                      .+||+|||||++|+++|..|++.|     .+|+|||+++.+|  |....+ +...+..+  ..+..+  +..++      
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g--~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l  107 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYL  107 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC--SSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC--CcCCCCCCCCcCCcchhhccccccCCCCCCChhHhh
Confidence            469999999999999999999999     9999999999887  655433 22111100  000000  00000      


Q ss_pred             ---------CCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCC-CCeE--EEEEeecCCCCceeEEEEee
Q 022090           71 ---------PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA-TNMW--NVKASNLLSPGREIEEYYSG  138 (303)
Q Consensus        71 ---------~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~-~~~~--~v~~~~~~~~~~~~~~~~~a  138 (303)
                               +.....++++.++.+|+.+++++++...  +++++|++++.++. .+.|  .|.+.++.+   +..+ +.|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g---~~~~-~~~  181 (463)
T 3s5w_A          108 HKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQS--RYGEEVLRIEPMLSAGQVEALRVISRNADG---EELV-RTT  181 (463)
T ss_dssp             HHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTE--EESEEEEEEEEEEETTEEEEEEEEEEETTS---CEEE-EEE
T ss_pred             hhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeE--EeCCEEEEEEEecCCCceEEEEEEEecCCC---ceEE-EEe
Confidence                     0111245678999999999999888655  99999999988632 2445  666665432   2247 899


Q ss_pred             CEEEEccCCCCCCCCCCCCCccccccCCCCCc--cEEecccCCCC-CCC-----CCCeEEEECCCccHHHHHHHHhhc--
Q 022090          139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTG--EVIHSTQYKNG-KPY-----GGKNVLVVGSGNSGMEIALDLANH--  208 (303)
Q Consensus       139 d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g--~~~~~~~~~~~-~~~-----~~~~v~ViG~G~~g~e~a~~l~~~--  208 (303)
                      |+||+|||  +.|.+|..  .+.+      .+  .++|+..+... ..+     .+++|+|||+|.+|+|+|..|++.  
T Consensus       182 d~lVlAtG--~~p~~p~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~  251 (463)
T 3s5w_A          182 RALVVSPG--GTPRIPQV--FRAL------KGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYP  251 (463)
T ss_dssp             SEEEECCC--CEECCCGG--GGGG------TTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCT
T ss_pred             CEEEECCC--CCCCCcch--hhhc------CCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCC
Confidence            99999999  56766652  3344      44  67888776542 222     589999999999999999999999  


Q ss_pred             cCceEEEeecCeeeeehh
Q 022090          209 AAKTSLVVRSPVHVLSRE  226 (303)
Q Consensus       209 g~~vt~~~r~~~~~lp~~  226 (303)
                      +.+||+++|++ .++|..
T Consensus       252 ~~~Vt~v~r~~-~~~p~~  268 (463)
T 3s5w_A          252 SVQADMILRAS-ALKPAD  268 (463)
T ss_dssp             TEEEEEECSSS-SCCBCC
T ss_pred             CCeEEEEEeCC-CCcCcc
Confidence            89999999999 577754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.92  E-value=6.2e-24  Score=188.16  Aligned_cols=187  Identities=20%  Similarity=0.315  Sum_probs=134.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCCCCCccCcCCCCceEEecCc---ccccCCCCCC--CCC------C
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAK---QFCQLPHLPF--PSS------Y   74 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~---~~~~~~~~~~--~~~------~   74 (303)
                      .+||+|||||++|+++|..|++.|. +|+|||+++ +||.|...... .....+.   ..+.+..+..  +..      .
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   81 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKS-TRTITPSFTSNGFGMPDMNAISMDTSPAFTFN   81 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTT-CBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCccc-ccccCcchhcccCCchhhhhcccccccccccc
Confidence            4799999999999999999999999 999999998 99988643111 1111111   0111111110  111      1


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           75 PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        75 ~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      ..++++.++..|+.++++++++..  +++++|++++.++  +.|.|.+.+        .+ +.||+||+|||..+.|   
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~--------g~-~~~d~vVlAtG~~~~p---  145 (369)
T 3d1c_A           82 EEHISGETYAEYLQVVANHYELNI--FENTVVTNISADD--AYYTIATTT--------ET-YHADYIFVATGDYNFP---  145 (369)
T ss_dssp             CSSCBHHHHHHHHHHHHHHTTCEE--ECSCCEEEEEECS--SSEEEEESS--------CC-EEEEEEEECCCSTTSB---
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCeE--EeCCEEEEEEECC--CeEEEEeCC--------CE-EEeCEEEECCCCCCcc---
Confidence            235677889999999999888765  8899999998865  468887754        25 7899999999965444   


Q ss_pred             CCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeee
Q 022090          155 DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVL  223 (303)
Q Consensus       155 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~l  223 (303)
                      .+|+ ..          .+|+..+.....+.+++|+|||+|.+|+|+|..|.+.|.+||+++|++ .++
T Consensus       146 ~ip~-~~----------~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~-~~~  202 (369)
T 3d1c_A          146 KKPF-KY----------GIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTT-GLN  202 (369)
T ss_dssp             CCCS-SS----------CEEGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC------
T ss_pred             CCCC-Cc----------eechhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCC-CCC
Confidence            4444 22          367777766555567899999999999999999999999999999998 444

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.91  E-value=2.3e-24  Score=186.62  Aligned_cols=174  Identities=21%  Similarity=0.339  Sum_probs=136.3

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +||+|||||++|+++|..|++.|+ +|+|+|++ ..||.|.....          ...++.      ++...++.++.++
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~~~~----------~~~~~~------~~~~~~~~~~~~~   64 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITGSSE----------IENYPG------VKEVVSGLDFMQP   64 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGGCSC----------BCCSTT------CCSCBCHHHHHHH
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCcccccccc----------cccCCC------CcccCCHHHHHHH
Confidence            699999999999999999999999 99999995 57777754210          001111      1234567889999


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~  166 (303)
                      +.+.+++++++.  ++ ++|++++.++  +.|.|.+.++       .+ +.||+||+|||  +.|..|++||.+.|    
T Consensus        65 l~~~~~~~~v~~--~~-~~v~~i~~~~--~~~~v~~~~g-------~~-~~~~~vv~AtG--~~~~~~~~~g~~~~----  125 (311)
T 2q0l_A           65 WQEQCFRFGLKH--EM-TAVQRVSKKD--SHFVILAEDG-------KT-FEAKSVIIATG--GSPKRTGIKGESEY----  125 (311)
T ss_dssp             HHHHHHTTSCEE--EC-SCEEEEEEET--TEEEEEETTS-------CE-EEEEEEEECCC--EEECCCCCBTHHHH----
T ss_pred             HHHHHHHcCCEE--EE-EEEEEEEEcC--CEEEEEEcCC-------CE-EECCEEEECCC--CCCCCCCCCChhhc----
Confidence            999998887664  55 7899998865  5688877553       46 89999999999  67788899998766    


Q ss_pred             CCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       167 ~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                        .+..+|+....+.....+++++|||+|.+|+|+|..|.+.|.+||+++|++
T Consensus       126 --~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  176 (311)
T 2q0l_A          126 --WGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRD  176 (311)
T ss_dssp             --BTTTEESCHHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSS
T ss_pred             --cCCcEEEeecCChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCC
Confidence              555555544433334567999999999999999999999999999999988

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.91  E-value=9.8e-25  Score=190.80  Aligned_cols=183  Identities=16%  Similarity=0.240  Sum_probs=141.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC----CCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE----NCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ   82 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~----~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (303)
                      ++||+|||||++|+++|..|++.|++|+|||+.    ...||.|....          ....++      .++.+.+..+
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~----------~~~~~~------~~~~~~~~~~   85 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTT----------EIENFP------GFPDGLTGSE   85 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSS----------EECCST------TCTTCEEHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccch----------hhcccC------CCcccCCHHH
Confidence            579999999999999999999999999999994    47888886431          011111      1233456789


Q ss_pred             HHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccc
Q 022090           83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSF  162 (303)
Q Consensus        83 l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~  162 (303)
                      +.+++.++++++++..  ++++ |++++.+.  +.|.+.+.....+    .. +.+|+||+|||  +.|..|.+||.+.+
T Consensus        86 ~~~~~~~~~~~~gv~i--~~~~-v~~i~~~~--~~~~v~~~~~~~~----~~-~~~d~vvlAtG--~~~~~~~~~g~~~~  153 (338)
T 3itj_A           86 LMDRMREQSTKFGTEI--ITET-VSKVDLSS--KPFKLWTEFNEDA----EP-VTTDAIILATG--ASAKRMHLPGEETY  153 (338)
T ss_dssp             HHHHHHHHHHHTTCEE--ECSC-EEEEECSS--SSEEEEETTCSSS----CC-EEEEEEEECCC--EEECCCCCTTHHHH
T ss_pred             HHHHHHHHHHHcCCEE--EEeE-EEEEEEcC--CEEEEEEEecCCC----cE-EEeCEEEECcC--CCcCCCCCCCchhc
Confidence            9999999999998765  7887 88887765  6688877422211    46 89999999999  67888899998776


Q ss_pred             ccCCCCCccEEecccCCCCC--CCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeee
Q 022090          163 CSSATGTGEVIHSTQYKNGK--PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (303)
Q Consensus       163 ~~~~~~~g~~~~~~~~~~~~--~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp  224 (303)
                            .+..++........  ...+++++|||+|.+|+|+|..|.+.+.+|++++|.+ .+++
T Consensus       154 ------~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~-~~~~  210 (338)
T 3itj_A          154 ------WQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKD-HLRA  210 (338)
T ss_dssp             ------BTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS-SCCS
T ss_pred             ------cCccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC-ccCC
Confidence                  55555554433323  4568999999999999999999999999999999998 4444

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.91  E-value=4.1e-24  Score=188.91  Aligned_cols=185  Identities=19%  Similarity=0.315  Sum_probs=140.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .+||+|||||++|+++|..|++.|++|+|||+.+.+||.|... ++....      +..+.++       .....++.++
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~-~~~~~~------~~~~~~~-------~~~~~~~~~~   79 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAAL-YPEKHI------YDVAGFP-------EVPAIDLVES   79 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHT-CTTSEE------CCSTTCS-------SEEHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccc-CCCccc------ccCCCCC-------CCCHHHHHHH
Confidence            4799999999999999999999999999999999999988643 322211      1111111       1246788899


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC-CCCCCCCCC-cccccc
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT-NPFTPDIRG-LCSFCS  164 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~-~p~~p~~~g-~~~~~~  164 (303)
                      +.+.++.+++..  +++++|++++..+ .+.|.|.+.++       .+ +.||+||+|||..+ .|..|+++| .+.+  
T Consensus        80 l~~~~~~~~~~~--~~~~~v~~i~~~~-~~~~~v~~~~g-------~~-~~~~~li~AtG~~~~~~~~~~i~g~~~~~--  146 (360)
T 3ab1_A           80 LWAQAERYNPDV--VLNETVTKYTKLD-DGTFETRTNTG-------NV-YRSRAVLIAAGLGAFEPRKLPQLGNIDHL--  146 (360)
T ss_dssp             HHHHHHTTCCEE--ECSCCEEEEEECT-TSCEEEEETTS-------CE-EEEEEEEECCTTCSCCBCCCGGGCCCTTT--
T ss_pred             HHHHHHHhCCEE--EcCCEEEEEEECC-CceEEEEECCC-------cE-EEeeEEEEccCCCcCCCCCCCCCCchhhC--
Confidence            999888887654  8899999998865 23688887654       46 89999999999654 677778888 6666  


Q ss_pred             CCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeee
Q 022090          165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (303)
Q Consensus       165 ~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp  224 (303)
                          .+..++.. +.+...+.+++++|||+|.+|+|+|..|.+.+.+|++++|++ .+++
T Consensus       147 ----~~~~v~~~-~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~-~~~~  200 (360)
T 3ab1_A          147 ----TGSSVYYA-VKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGH-EFQG  200 (360)
T ss_dssp             ----BTTTEESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSS-SCSS
T ss_pred             ----cCceEEEe-cCCHHHcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC-CCCC
Confidence                55434432 233334568999999999999999999999999999999988 4443

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.91  E-value=8.1e-24  Score=183.17  Aligned_cols=177  Identities=21%  Similarity=0.325  Sum_probs=139.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEE-EecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVI-LERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~i-ie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      .++||+|||||++|+++|..|++.|++|++ +|+ +.+||.|.....          ...++      .++...+..++.
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~----------~~~~~------~~~~~~~~~~~~   65 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSE----------IENYP------GVAQVMDGISFM   65 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSC----------BCCST------TCCSCBCHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeece----------eccCC------CCCCCCCHHHHH
Confidence            457999999999999999999999999999 999 667888864311          00111      112345778999


Q ss_pred             HHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (303)
Q Consensus        85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~  164 (303)
                      .++.++++++++..  +++ +|+++ .++..+.|.+.....       .+ +.||+||+|||  +.|..|.+||.+.+  
T Consensus        66 ~~~~~~~~~~~v~~--~~~-~v~~i-~~~~~~~~~v~~~~~-------~~-~~~d~lvlAtG--~~~~~~~~~g~~~~--  129 (315)
T 3r9u_A           66 APWSEQCMRFGLKH--EMV-GVEQI-LKNSDGSFTIKLEGG-------KT-ELAKAVIVCTG--SAPKKAGFKGEDEF--  129 (315)
T ss_dssp             HHHHHHHTTTCCEE--ECC-CEEEE-EECTTSCEEEEETTS-------CE-EEEEEEEECCC--EEECCCCCBTTTTT--
T ss_pred             HHHHHHHHHcCcEE--EEE-EEEEE-ecCCCCcEEEEEecC-------CE-EEeCEEEEeeC--CCCCCCCCCChhhc--
Confidence            99999999988764  666 78888 554335687644432       26 89999999999  67888899998877  


Q ss_pred             CCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       165 ~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                          .+..+|+..+.......+++++|||+|.+|+|+|..|.+.+.+|++++|.+
T Consensus       130 ----~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~  180 (315)
T 3r9u_A          130 ----FGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRD  180 (315)
T ss_dssp             ----BTTTEESCHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSS
T ss_pred             ----CCCeEEeeecccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCC
Confidence                666677766555455678999999999999999999999999999999998

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.90  E-value=1.7e-23  Score=179.57  Aligned_cols=171  Identities=15%  Similarity=0.167  Sum_probs=134.1

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   87 (303)
                      +||+|||||++|+++|..|++.|++|+|+|+++..+..+...                ..+  +.  ....+..++..++
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~----------------~~~--~~--~~~~~~~~~~~~~   62 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHS----------------HGF--LG--QDGKAPGEIIAEA   62 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCC----------------CSS--TT--CTTCCHHHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhh----------------cCC--cC--CCCCCHHHHHHHH
Confidence            699999999999999999999999999999986544322110                000  10  1245678899999


Q ss_pred             HHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCCC
Q 022090           88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSAT  167 (303)
Q Consensus        88 ~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~~  167 (303)
                      .+.+++++...  .++.+|++++.++  +.|.|.+.++       .+ +.||+||+|||  +.|..|.+||.+.+     
T Consensus        63 ~~~~~~~~~v~--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-~~~d~vviAtG--~~~~~~~~~g~~~~-----  123 (297)
T 3fbs_A           63 RRQIERYPTIH--WVEGRVTDAKGSF--GEFIVEIDGG-------RR-ETAGRLILAMG--VTDELPEIAGLRER-----  123 (297)
T ss_dssp             HHHHTTCTTEE--EEESCEEEEEEET--TEEEEEETTS-------CE-EEEEEEEECCC--CEEECCCCBTTGGG-----
T ss_pred             HHHHHhcCCeE--EEEeEEEEEEEcC--CeEEEEECCC-------CE-EEcCEEEECCC--CCCCCCCCCCchhh-----
Confidence            99988773212  3456899998876  5689988764       56 89999999999  67888899998877     


Q ss_pred             CCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          168 GTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       168 ~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                       .+..++...+.+.....+++++|||+|.+|+|+|..|.+.| +|+++++.+
T Consensus       124 -~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~  173 (297)
T 3fbs_A          124 -WGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGI  173 (297)
T ss_dssp             -BTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTT
T ss_pred             -cCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCC
Confidence             66666666555555567899999999999999999999998 999999987

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.90  E-value=7.8e-24  Score=185.32  Aligned_cols=174  Identities=19%  Similarity=0.281  Sum_probs=133.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .+||+|||||++|+++|..|++.|++|++||+. ..||.|.....          ...++.      ++......++.++
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~----------~~~~~~------~~~~~~~~~~~~~   76 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMTTTD----------VENYPG------FRNGITGPELMDE   76 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGSCSC----------BCCSTT------CTTCBCHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceeccch----------hhhcCC------CCCCCCHHHHHHH
Confidence            479999999999999999999999999999976 57777653210          001111      1122456789999


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEE-EEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV-KASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v-~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      +.+.+++++++.  ++++ |++++. .  +.|.| .+.++       .+ +.||+||+|||  +.|..|++||.+.+   
T Consensus        77 l~~~~~~~~v~~--~~~~-v~~i~~-~--~~~~v~~~~~g-------~~-~~~d~lviAtG--~~~~~~~i~g~~~~---  137 (335)
T 2a87_A           77 MREQALRFGADL--RMED-VESVSL-H--GPLKSVVTADG-------QT-HRARAVILAMG--AAARYLQVPGEQEL---  137 (335)
T ss_dssp             HHHHHHHTTCEE--ECCC-EEEEEC-S--SSSEEEEETTS-------CE-EEEEEEEECCC--EEECCCCCTHHHHT---
T ss_pred             HHHHHHHcCCEE--EEee-EEEEEe-C--CcEEEEEeCCC-------CE-EEeCEEEECCC--CCccCCCCCchHhc---
Confidence            999998888665  7776 888876 2  55777 66543       46 89999999999  67788889987766   


Q ss_pred             CCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                         .+..+|+..........+++++|||+|.+|+|+|..|++.+.+||+++|++
T Consensus       138 ---~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~  188 (335)
T 2a87_A          138 ---LGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRD  188 (335)
T ss_dssp             ---BTTTEESCHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             ---cCCceEEeeccchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCC
Confidence               555566543333333568999999999999999999999999999999998

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.90  E-value=1.1e-23  Score=182.33  Aligned_cols=176  Identities=19%  Similarity=0.258  Sum_probs=135.2

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   87 (303)
                      +||+|||||++|+++|..|++.|++|+|+|+  ..||.|....  .           ++.++    ...+.+..++.+++
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~~~~--~-----------~~~~~----~~~~~~~~~~~~~~   62 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQILDTV--D-----------IENYI----SVPKTEGQKLAGAL   62 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGGGCC--E-----------ECCBT----TBSSEEHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceecccc--c-----------ccccc----CcCCCCHHHHHHHH
Confidence            6999999999999999999999999999986  4688876421  0           00000    01234567889999


Q ss_pred             HHHHHHcCCCceeEeCeEEEEEEEeCC-CCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090           88 DHYVSHFNIGPSIRYQRSVESASYDEA-TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (303)
Q Consensus        88 ~~~~~~~~l~~~i~~~~~V~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~  166 (303)
                      .+++++++++.  +++++|+.++.+.. .+.|.|.+.++       .+ +.||+||+|||  +.|..|++||.+.+    
T Consensus        63 ~~~~~~~~v~~--~~~~~v~~i~~~~~~~~~~~v~~~~g-------~~-~~~~~lv~AtG--~~~~~~~~~g~~~~----  126 (310)
T 1fl2_A           63 KVHVDEYDVDV--IDSQSASKLIPAAVEGGLHQIETASG-------AV-LKARSIIVATG--AKWRNMNVPGEDQY----  126 (310)
T ss_dssp             HHHHHTSCEEE--ECSCCEEEEECCSSTTCCEEEEETTS-------CE-EEEEEEEECCC--EEECCCCCTTTTTT----
T ss_pred             HHHHHHcCCeE--EccCEEEEEEecccCCceEEEEECCC-------CE-EEeCEEEECcC--CCcCCCCCCChhhc----
Confidence            99998887654  88889999976532 24688887654       46 89999999999  66777889998766    


Q ss_pred             CCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCe
Q 022090          167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (303)
Q Consensus       167 ~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~  220 (303)
                        .+..+++..........+++++|||+|.+|+|+|..|++.+.+||+++|++.
T Consensus       127 --~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  178 (310)
T 1fl2_A          127 --RTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  178 (310)
T ss_dssp             --BTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             --ccceeEEeccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcc
Confidence              5554554433322334679999999999999999999999999999999983

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.90  E-value=9.1e-24  Score=184.56  Aligned_cols=175  Identities=15%  Similarity=0.218  Sum_probs=132.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEec----CCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILER----ENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ   82 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~----~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (303)
                      .+||+|||||++|+++|..|++.|++|+|+|+    ....||.|.....          ...++.      ++......+
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~----------~~~~~~------~~~~~~~~~   71 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTD----------VENFPG------FPEGILGVE   71 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSE----------ECCSTT------CTTCEEHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccc----------cccCCC------CccCCCHHH
Confidence            47999999999999999999999999999999    5566776643210          011111      122245678


Q ss_pred             HHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccc-
Q 022090           83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS-  161 (303)
Q Consensus        83 l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~-  161 (303)
                      +.+++.+.+++.+++.  ++++ |++++...  +.|+|.+ ++       .+ +.||+||+|||  +.|..|++||.+. 
T Consensus        72 ~~~~l~~~~~~~gv~~--~~~~-v~~i~~~~--~~~~v~~-~~-------~~-~~~~~vv~A~G--~~~~~~~~~g~~~~  135 (333)
T 1vdc_A           72 LTDKFRKQSERFGTTI--FTET-VTKVDFSS--KPFKLFT-DS-------KA-ILADAVILAIG--AVAKRLSFVGSGEV  135 (333)
T ss_dssp             HHHHHHHHHHHTTCEE--ECCC-CCEEECSS--SSEEEEC-SS-------EE-EEEEEEEECCC--EEECCCCCBTCSSS
T ss_pred             HHHHHHHHHHHCCCEE--EEeE-EEEEEEcC--CEEEEEE-CC-------cE-EEcCEEEECCC--CCcCCCCCCCcccc
Confidence            9999999998888665  7776 88887654  5688877 32       57 89999999999  6677888888765 


Q ss_pred             ---cccCCCCCccEEecccCCCCCC--CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          162 ---FCSSATGTGEVIHSTQYKNGKP--YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       162 ---~~~~~~~~g~~~~~~~~~~~~~--~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                         |      .+..+|+........  ..+++++|||+|.+|+|+|..|.+.+.+|++++|++
T Consensus       136 ~~~~------~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~  192 (333)
T 1vdc_A          136 LGGF------WNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  192 (333)
T ss_dssp             SSCC------BTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             cccc------ccCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCC
Confidence               4      444455443333222  568999999999999999999999999999999998

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.90  E-value=3.5e-23  Score=178.77  Aligned_cols=177  Identities=12%  Similarity=0.210  Sum_probs=126.3

Q ss_pred             CCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHH
Q 022090            4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (303)
Q Consensus         4 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (303)
                      .+++|||+||||||+|++||..|+++|.+|+|||++.. ||.+..+ |+              .++.    ....+..++
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~-gg~~~~~-~~--------------~~~~----~~~~~~~~~   62 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTN-RNRVTQN-SH--------------GFIT----RDGIKPEEF   62 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC-GGGGSSC-BC--------------CSTT----CTTBCHHHH
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC-CCeeeee-cC--------------CccC----CCCCCHHHH
Confidence            45679999999999999999999999999999999764 4433221 11              1110    112345677


Q ss_pred             HHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022090           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (303)
Q Consensus        84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~  163 (303)
                      .+...+.+.+++...  +++..+..+...+ .+.+++.+.++       .+ +.||+||+|||  +.|+.|++||.+.+ 
T Consensus        63 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~v~~~~g-------~~-~~a~~liiATG--s~p~~p~i~G~~~~-  128 (304)
T 4fk1_A           63 KEIGLNEVMKYPSVH--YYEKTVVMITKQS-TGLFEIVTKDH-------TK-YLAERVLLATG--MQEEFPSIPNVREY-  128 (304)
T ss_dssp             HHHHHHHHTTSTTEE--EEECCEEEEEECT-TSCEEEEETTC-------CE-EEEEEEEECCC--CEEECCSCTTHHHH-
T ss_pred             HHHHHHHHHhcCCEE--EEeeEEEEeeecC-CCcEEEEECCC-------CE-EEeCEEEEccC--CccccccccCcccc-
Confidence            777666666665433  4555566665544 35688887764       57 89999999999  78999999998876 


Q ss_pred             cCCCCCccEEecccCCCCCCCCCCeEEEECCCcc-HHHHHHHHhhccCceEEEeecC
Q 022090          164 SSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNS-GMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       164 ~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~-g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                           .+..++..........++++++|||+|.. ++|+|..+.+.+.+|+++.+.+
T Consensus       129 -----~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~  180 (304)
T 4fk1_A          129 -----YGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGN  180 (304)
T ss_dssp             -----BTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSC
T ss_pred             -----ccceeeeccccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccc
Confidence                 66545555444445566788899998864 6788988888899999988876

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.89  E-value=1.6e-23  Score=181.87  Aligned_cols=174  Identities=18%  Similarity=0.303  Sum_probs=132.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .+||+|||||++|+++|..|++.|++|+++|+. ..||.|.....          ...++.      ++......++.++
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~----------~~~~~~------~~~~~~~~~~~~~   67 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTE----------VENWPG------DPNDLTGPLLMER   67 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGGGCSB----------CCCSTT------CCSSCBHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEecchh----------hhhCCC------CCCCCCHHHHHHH
Confidence            479999999999999999999999999999975 57776643210          001111      1223456788999


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~  166 (303)
                      +.+.+++++++.  ++++ ++.++...  +.|.+ ..++       .+ +.||+||+|||  +.|..|++||.+.+    
T Consensus        68 ~~~~~~~~~~~~--~~~~-v~~i~~~~--~~~~v-~~~~-------~~-~~~~~lv~AtG--~~~~~~~~~g~~~~----  127 (320)
T 1trb_A           68 MHEHATKFETEI--IFDH-INKVDLQN--RPFRL-NGDN-------GE-YTCDALIIATG--ASARYLGLPSEEAF----  127 (320)
T ss_dssp             HHHHHHHTTCEE--ECCC-EEEEECSS--SSEEE-EESS-------CE-EEEEEEEECCC--EEECCCCCHHHHHT----
T ss_pred             HHHHHHHCCCEE--EEee-eeEEEecC--CEEEE-EeCC-------CE-EEcCEEEECCC--CCcCCCCCCChHHh----
Confidence            999998888764  6665 88887654  56877 4443       46 89999999999  66778888887665    


Q ss_pred             CCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       167 ~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                        .+..+|.....+.....+++++|||+|.+|+|+|..|.+.|.+||+++|++
T Consensus       128 --~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~  178 (320)
T 1trb_A          128 --KGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  178 (320)
T ss_dssp             --BTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             --CCceeEecccCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC
Confidence              444455443333333567999999999999999999999999999999998

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.89  E-value=4.4e-23  Score=179.21  Aligned_cols=173  Identities=16%  Similarity=0.332  Sum_probs=130.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .+||+|||||++|+++|..|++.|++|+|+|+. ..||.|.....          ...++.      + ......++.++
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~----------~~~~~~------~-~~~~~~~~~~~   77 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA-VAGGLTAEAPL----------VENYLG------F-KSIVGSELAKL   77 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTGGGGGCSC----------BCCBTT------B-SSBCHHHHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC-CCCccccccch----------hhhcCC------C-cccCHHHHHHH
Confidence            479999999999999999999999999999994 57777653210          000111      0 13456788889


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~  166 (303)
                      +.+.++++++..  ++ .+|++++...  +.|.|.+.+        .+ +.||+||+|||  +.|..|.+||.+.+    
T Consensus        78 ~~~~~~~~~v~~--~~-~~v~~i~~~~--~~~~v~~~~--------~~-~~~~~li~AtG--~~~~~~~i~g~~~~----  137 (319)
T 3cty_A           78 FADHAANYAKIR--EG-VEVRSIKKTQ--GGFDIETND--------DT-YHAKYVIITTG--TTHKHLGVKGESEY----  137 (319)
T ss_dssp             HHHHHHTTSEEE--ET-CCEEEEEEET--TEEEEEESS--------SE-EEEEEEEECCC--EEECCCCCBTTTTT----
T ss_pred             HHHHHHHcCCEE--EE-eeEEEEEEeC--CEEEEEECC--------CE-EEeCEEEECCC--CCcccCCCCChHHh----
Confidence            998888887653  55 6888988765  567776632        46 89999999999  66788888887665    


Q ss_pred             CCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       167 ~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                        .+..++.....+.....+++++|||+|.+|+|+|..|++.+.+||+++|.+
T Consensus       138 --~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~  188 (319)
T 3cty_A          138 --FGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMP  188 (319)
T ss_dssp             --BTTTEESCHHHHGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSS
T ss_pred             --CCceEEEEEecchhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCC
Confidence              444444433322233457999999999999999999999999999999988

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.89  E-value=1.3e-24  Score=193.48  Aligned_cols=181  Identities=17%  Similarity=0.190  Sum_probs=127.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .+.+|+|||||+||+++|..|...+.+|+|||+++..+       |....+  +..+            ....+.+++..
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~-------y~~~~l--~~~l------------~g~~~~~~l~~   66 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLP-------YYRPRL--NEII------------AKNKSIDDILI   66 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCC-------BCGGGH--HHHH------------HSCCCGGGTBS
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCC-------cccChh--hHHH------------cCCCCHHHccC
Confidence            45799999999999999999977899999999998754       211100  0000            00111122333


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      +..++.++++++.  +++++|++++.+.    .+|++.++       .+ +.||+||+|||  +.|+.|++||.+.    
T Consensus        67 ~~~~~~~~~~i~~--~~~~~V~~id~~~----~~v~~~~g-------~~-~~yd~lvlAtG--~~p~~p~i~G~~~----  126 (385)
T 3klj_A           67 KKNDWYEKNNIKV--ITSEFATSIDPNN----KLVTLKSG-------EK-IKYEKLIIASG--SIANKIKVPHADE----  126 (385)
T ss_dssp             SCHHHHHHTTCEE--ECSCCEEEEETTT----TEEEETTS-------CE-EECSEEEECCC--EEECCCCCTTCSC----
T ss_pred             CCHHHHHHCCCEE--EeCCEEEEEECCC----CEEEECCC-------CE-EECCEEEEecC--CCcCCCCCCCCCC----
Confidence            3344555667665  8899999998765    46777664       57 89999999999  7888899988652    


Q ss_pred             CCCCccEEecccCCCCCCC-----CCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh-hhHHHHHHH
Q 022090          166 ATGTGEVIHSTQYKNGKPY-----GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR-EMVYLGVVL  234 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~~-----~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~-~~~~~~~~~  234 (303)
                            +++.....+....     .+++++|||+|.+|+|+|..|++.|.+||+++|.+ +++|+ .+..++..+
T Consensus       127 ------v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~-~~l~~~~~~~~~~~~  194 (385)
T 3klj_A          127 ------IFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILE-YPLERQLDRDGGLFL  194 (385)
T ss_dssp             ------EECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSS-SSCTTTSCHHHHHHH
T ss_pred             ------eEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCC-ccchhhcCHHHHHHH
Confidence                  2333322221111     26899999999999999999999999999999999 77776 344444433

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.89  E-value=1.8e-22  Score=186.65  Aligned_cols=177  Identities=19%  Similarity=0.257  Sum_probs=138.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..+||+|||||++|+++|..|++.|++|+++|+  ..||.|.....          ...+..       ..+....++.+
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~~~~~----------~~~~~~-------~~~~~~~~l~~  271 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVLDTVD----------IENYIS-------VPKTEGQKLAG  271 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGTTCSC----------BCCBTT-------BSSBCHHHHHH
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccccccc----------ccccCC-------CCCCCHHHHHH
Confidence            467999999999999999999999999999986  47888764210          000111       01245778999


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCC-CCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEA-TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~  164 (303)
                      ++.+.+++++++.  +++++|++++.+.. .+.|.|.+.++       .+ +.||+||+|||  +.|+.|++||.+.|  
T Consensus       272 ~l~~~~~~~gv~v--~~~~~v~~i~~~~~~~~~~~V~~~~g-------~~-~~~d~vVlAtG--~~~~~~~ipG~~~~--  337 (521)
T 1hyu_A          272 ALKAHVSDYDVDV--IDSQSASKLVPAATEGGLHQIETASG-------AV-LKARSIIIATG--AKWRNMNVPGEDQY--  337 (521)
T ss_dssp             HHHHHHHTSCEEE--ECSCCEEEEECCSSTTSCEEEEETTS-------CE-EEEEEEEECCC--EEECCCCCTTTTTT--
T ss_pred             HHHHHHHHcCCEE--EcCCEEEEEEeccCCCceEEEEECCC-------CE-EEcCEEEECCC--CCcCCCCCCChhhh--
Confidence            9999998888655  88889999986432 34688888654       46 89999999999  66778889998777  


Q ss_pred             CCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       165 ~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                          .+..++...........+++|+|||+|++|+|+|..|++.+.+||+++|.+
T Consensus       338 ----~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~  388 (521)
T 1hyu_A          338 ----RTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP  388 (521)
T ss_dssp             ----TTTTEECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSS
T ss_pred             ----cCceEEEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCc
Confidence                665556555544444568999999999999999999999999999999998

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.87  E-value=2.8e-22  Score=183.08  Aligned_cols=198  Identities=14%  Similarity=0.110  Sum_probs=129.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC-CCCceEEecCc----ccccCCCCCCCCCCCCCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAK----QFCQLPHLPFPSSYPMFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~   81 (303)
                      .+||+|||||++|+++|..|++.|.+|+|||+.+.+||.|.+. +.++..+....    .+..++.      .....+..
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~------~~~~~~~~   77 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIAN------VKIPLDFS   77 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHC------SCCCCCHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhccc------CCCCcCHH
Confidence            4899999999999999999999999999999999999988642 11111000000    0000000      11122333


Q ss_pred             HHHHHHHH------------HHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           82 QFIEHLDH------------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        82 ~l~~~l~~------------~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      .+..+...            ..+..+++.  + ..++..++.    ..+.|...++     +..+ +.||+||+|||  +
T Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~-~g~v~~id~----~~~~V~~~~g-----~~~~-~~~d~lviAtG--~  142 (466)
T 3l8k_A           78 TVQDRKDYVQELRFKQHKRNMSQYETLTF--Y-KGYVKIKDP----THVIVKTDEG-----KEIE-AETRYMIIASG--A  142 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCTTEEE--E-SEEEEEEET----TEEEEEETTS-----CEEE-EEEEEEEECCC--E
T ss_pred             HHHHHHHhheeccccchHHHHHHhCCCEE--E-EeEEEEecC----CeEEEEcCCC-----cEEE-EecCEEEECCC--C
Confidence            33333322            222223322  3 335666542    4577776543     2345 78999999999  7


Q ss_pred             CCCCCCCCCccccccCCCCCccEEecccCC---CCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehh
Q 022090          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYK---NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE  226 (303)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~  226 (303)
                      .|..|++||.+.+          +++.++.   ......+++++|||+|.+|+|+|..|++.|.+||+++|.+ .++|..
T Consensus       143 ~p~~p~i~G~~~~----------~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~  211 (466)
T 3l8k_A          143 ETAKLRLPGVEYC----------LTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLD-RALITL  211 (466)
T ss_dssp             EECCCCCTTGGGS----------BCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTS
T ss_pred             CccCCCCCCccce----------EeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCC-cCCCCC
Confidence            8889999997643          3333222   1233457999999999999999999999999999999998 778776


Q ss_pred             -hHHHHHHHHh
Q 022090          227 -MVYLGVVLFK  236 (303)
Q Consensus       227 -~~~~~~~~~~  236 (303)
                       +.++...+.+
T Consensus       212 ~d~~~~~~l~~  222 (466)
T 3l8k_A          212 EDQDIVNTLLS  222 (466)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHHh
Confidence             5555554443

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.87  E-value=1.5e-21  Score=177.57  Aligned_cols=184  Identities=15%  Similarity=0.185  Sum_probs=123.6

Q ss_pred             CcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      +||+|||||++|+++|..|++.  |.+|+|||+++..|.....     +......               .+.+..++..
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~-----~~~~~~~---------------~~~~~~~~~~   62 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGG-----LSAYFNH---------------TINELHEARY   62 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC------------------------------------CC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCcc-----chhhhcC---------------CCCCHHHhhc
Confidence            5999999999999999999998  8999999999876621100     0000000               0000111111


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      +..+.+++++++.  +++++|++++...  ..+.+....      ...+ +.||+||+|||  +.|..|++||.+.    
T Consensus        63 ~~~~~~~~~gi~~--~~~~~V~~id~~~--~~v~v~~~~------~~~~-~~~d~lviAtG--~~p~~p~i~g~~~----  125 (452)
T 3oc4_A           63 ITEEELRRQKIQL--LLNREVVAMDVEN--QLIAWTRKE------EQQW-YSYDKLILATG--ASQFSTQIRGSQT----  125 (452)
T ss_dssp             CCHHHHHHTTEEE--ECSCEEEEEETTT--TEEEEEETT------EEEE-EECSEEEECCC--CCBCCCCCBTTTC----
T ss_pred             CCHHHHHHCCCEE--EECCEEEEEECCC--CEEEEEecC------ceEE-EEcCEEEECCC--cccCCCCCCCCCC----
Confidence            1233345566554  7899999998765  556665221      1257 89999999999  7888999998763    


Q ss_pred             CCCCccEEecccCCCCCC-----CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh-hhHHHHHH
Q 022090          166 ATGTGEVIHSTQYKNGKP-----YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR-EMVYLGVV  233 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~~~~-----~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~-~~~~~~~~  233 (303)
                          ..++++..+.....     ..+++++|||+|.+|+|+|..+++.|.+||+++|.+ .++|+ .+.++...
T Consensus       126 ----~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~d~~~~~~  194 (452)
T 3oc4_A          126 ----EKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLE-NLLPKYFDKEMVAE  194 (452)
T ss_dssp             ----TTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTTCCHHHHHH
T ss_pred             ----CCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-ccccccCCHHHHHH
Confidence                23455544433221     357999999999999999999999999999999998 67765 34444433

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.86  E-value=2.3e-23  Score=184.42  Aligned_cols=174  Identities=21%  Similarity=0.269  Sum_probs=118.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..||+|||||++|+++|..|++.| +|+|+|+++..+  |...   .+    +..+   .         ...+.+++..+
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~--~~~~---~l----~~~~---~---------g~~~~~~~~~~   65 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPY--YSKP---ML----SHYI---A---------GFIPRNRLFPY   65 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCC--CCST---TH----HHHH---T---------TSSCGGGGCSS
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCc--cccc---hh----HHHH---h---------CCCCHHHhccC
Confidence            469999999999999999999999 999999987542  1100   00    0000   0         00111122222


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~  166 (303)
                      ..+++++.+++.  +++++|+.++...    +.|. .++       .+ +.||+||+|||  +.|..|++||.+.     
T Consensus        66 ~~~~~~~~~v~~--~~g~~v~~id~~~----~~V~-~~g-------~~-~~~d~lViATG--s~p~~p~i~G~~~-----  123 (367)
T 1xhc_A           66 SLDWYRKRGIEI--RLAEEAKLIDRGR----KVVI-TEK-------GE-VPYDTLVLATG--ARAREPQIKGKEY-----  123 (367)
T ss_dssp             CHHHHHHHTEEE--ECSCCEEEEETTT----TEEE-ESS-------CE-EECSEEEECCC--EEECCCCSBTGGG-----
T ss_pred             CHHHHHhCCcEE--EECCEEEEEECCC----CEEE-ECC-------cE-EECCEEEECCC--CCCCCCCCCCcCC-----
Confidence            334445567654  7888898887654    5666 443       56 89999999999  7888888988332     


Q ss_pred             CCCccEEecccCCCCCCC-----CCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHH
Q 022090          167 TGTGEVIHSTQYKNGKPY-----GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLG  231 (303)
Q Consensus       167 ~~~g~~~~~~~~~~~~~~-----~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~  231 (303)
                           +++.....+...+     .+++++|||+|.+|+|+|..|++.|.+||+++|.+ +++| .+.++.
T Consensus       124 -----v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~-~~~~~~  186 (367)
T 1xhc_A          124 -----LLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA-MFLG-LDEELS  186 (367)
T ss_dssp             -----EECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS-CCTT-CCHHHH
T ss_pred             -----EEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCC-eecc-CCHHHH
Confidence                 2443322221111     35899999999999999999999999999999998 6776 443443

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.86  E-value=1.4e-22  Score=187.41  Aligned_cols=203  Identities=17%  Similarity=0.150  Sum_probs=128.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC--------CCCCccCc-CCCCceEEecCcc----cccCCCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--------CYASIWKK-YSYDRLRLHLAKQ----FCQLPHLPFPS   72 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~--------~~gg~w~~-~~~~~~~~~~~~~----~~~~~~~~~~~   72 (303)
                      ..+||+|||||++|+++|..|++.|.+|+|||+++        .+||+|.+ .+.|...+.....    ...+..+.++.
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~  110 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKV  110 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCccc
Confidence            35799999999999999999999999999999964        68887653 2222211110000    00011111111


Q ss_pred             CCCCCCCHHHHHHHHHHHHH-----------HcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEE
Q 022090           73 SYPMFVSRAQFIEHLDHYVS-----------HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL  141 (303)
Q Consensus        73 ~~~~~~~~~~l~~~l~~~~~-----------~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v  141 (303)
                      ......+...+.++.+.+.+           ..+++   .+...+..++.    ..+.|...++     +..+ +.||+|
T Consensus       111 ~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~---~i~g~a~~~d~----~~v~v~~~~g-----~~~~-i~~d~l  177 (519)
T 3qfa_A          111 EETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVV---YENAYGQFIGP----HRIKATNNKG-----KEKI-YSAERF  177 (519)
T ss_dssp             CSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EECSEEEEEET----TEEEEECTTC-----CCCE-EEEEEE
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEEEEEEeeC----CEEEEEcCCC-----CEEE-EECCEE
Confidence            11223455666666554333           23433   23333444422    2345544332     2247 899999


Q ss_pred             EEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCee
Q 022090          142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH  221 (303)
Q Consensus       142 IlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~  221 (303)
                      |+|||  +.|..|++||.+.+         ++++.++.. ....+++++|||+|.+|+|+|..|++.|.+||+++|+  .
T Consensus       178 ViATG--s~p~~p~i~G~~~~---------~~t~~~~~~-l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~--~  243 (519)
T 3qfa_A          178 LIATG--ERPRYLGIPGDKEY---------CISSDDLFS-LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS--I  243 (519)
T ss_dssp             EECCC--EEECCCCCTTHHHH---------CBCHHHHTT-CSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--C
T ss_pred             EEECC--CCcCCCCCCCccCc---------eEcHHHHhh-hhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc--c
Confidence            99999  88899999996543         234444433 3345788999999999999999999999999999984  5


Q ss_pred             eeehhhHHHHHHHH
Q 022090          222 VLSREMVYLGVVLF  235 (303)
Q Consensus       222 ~lp~~~~~~~~~~~  235 (303)
                      ++|..+.++...+.
T Consensus       244 ~l~~~d~~~~~~~~  257 (519)
T 3qfa_A          244 LLRGFDQDMANKIG  257 (519)
T ss_dssp             SSTTSCHHHHHHHH
T ss_pred             ccccCCHHHHHHHH
Confidence            77776655554443

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.86  E-value=2.7e-22  Score=184.36  Aligned_cols=203  Identities=17%  Similarity=0.171  Sum_probs=124.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecCcccc-----cCCCCCCCCCCCCCCCH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFC-----QLPHLPFPSSYPMFVSR   80 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~   80 (303)
                      .+||+|||||++|+++|..|++.|++|+|||+++.+||+|.+ .+++...+.......     .+..+.++.. ....+.
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~~  103 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVA-NPKLNL  103 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECC-CCEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccC-CCccCH
Confidence            489999999999999999999999999999999999998754 222221111000000     0111111100 011123


Q ss_pred             HHHHHHH-----------HHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           81 AQFIEHL-----------DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        81 ~~l~~~l-----------~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      ..+..+.           ....+..+++.  ..+. ...+    +...+.|...++     +..+ +.||+||+|||  +
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g~-~~~~----~~~~~~v~~~~g-----~~~~-~~~d~lViATG--s  168 (491)
T 3urh_A          104 QKMMAHKDATVKSNVDGVSFLFKKNKIDG--FQGT-GKVL----GQGKVSVTNEKG-----EEQV-LEAKNVVIATG--S  168 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESE-EEEC----SSSEEEEECTTS-----CEEE-EECSEEEECCC--E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEE-EEEe----cCCEEEEEeCCC-----ceEE-EEeCEEEEccC--C
Confidence            3333332           22333445442  3332 2221    124455654332     2257 89999999999  5


Q ss_pred             CCCCCCCCCccc-cccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH
Q 022090          150 NPFTPDIRGLCS-FCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       150 ~p~~p~~~g~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~  228 (303)
                      .|  |.+||.+. +      .+..+++..........+++++|||+|.+|+|+|..|++.|.+||++++.+ .++|..+.
T Consensus       169 ~p--~~ipg~~~~~------~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d~  239 (491)
T 3urh_A          169 DV--AGIPGVEVAF------DEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLD-TILGGMDG  239 (491)
T ss_dssp             EC--CCBTTBCCCC------CSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS-SSSSSSCH
T ss_pred             CC--CCCCCccccc------CCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccc-cccccCCH
Confidence            44  45677653 3      343344443333345568999999999999999999999999999999998 77776655


Q ss_pred             HHHHHH
Q 022090          229 YLGVVL  234 (303)
Q Consensus       229 ~~~~~~  234 (303)
                      ++...+
T Consensus       240 ~~~~~l  245 (491)
T 3urh_A          240 EVAKQL  245 (491)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554443

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.86  E-value=3.9e-22  Score=182.25  Aligned_cols=200  Identities=18%  Similarity=0.161  Sum_probs=124.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC-CCCceEEecCcc----cccCCCC-CCCCCCCCCCCH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAKQ----FCQLPHL-PFPSSYPMFVSR   80 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~   80 (303)
                      ++||+|||||++|+++|..|++.|.+|+|||++ .+||.|.+. +.+...+.....    ....+.. ..+.. ....+.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~~   81 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAAT-VPTIDR   81 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCC-CCCCCH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCC-CCccCH
Confidence            589999999999999999999999999999998 688887532 111110000000    0011111 01100 111223


Q ss_pred             HHHHH-------HHH-----HHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           81 AQFIE-------HLD-----HYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        81 ~~l~~-------~l~-----~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      ..+..       ++.     ...+.. +++.  +.+ ++..++  .  ..+.|...++     +..+ +.||+||+||| 
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~g-~~~~~~--~--~~~~v~~~~g-----~~~~-~~~d~lviAtG-  147 (467)
T 1zk7_A           82 SKLLAQQQARVDELRHAKYEGILGGNPAITV--VHG-EARFKD--D--QSLTVRLNEG-----GERV-VMFDRCLVATG-  147 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHTTCTTEEE--EEE-EEEEEE--T--TEEEEEETTS-----SEEE-EECSEEEECCC-
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhccCCeEE--EEE-EEEEcc--C--CEEEEEeCCC-----ceEE-EEeCEEEEeCC-
Confidence            33332       222     112222 3322  333 344443  2  4566666443     2256 89999999999 


Q ss_pred             CCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhh
Q 022090          148 TTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (303)
Q Consensus       148 ~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~  227 (303)
                       +.|..|++||.+..        .++++.+... ....+++++|||+|.+|+|+|..+.+.|.+||+++|.+ +++| .+
T Consensus       148 -s~p~~p~i~G~~~~--------~~~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~-~~  215 (467)
T 1zk7_A          148 -ASPAVPPIPGLKES--------PYWTSTEALA-SDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNT-LFFR-ED  215 (467)
T ss_dssp             -EEECCCCCTTTTTS--------CCBCHHHHHH-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC-TTTT-SC
T ss_pred             -CCCCCCCCCCCCcC--------ceecHHHHhc-ccccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECC-ccCC-CC
Confidence             78889999987642        1234433332 22347999999999999999999999999999999998 6776 44


Q ss_pred             HHHHHHH
Q 022090          228 VYLGVVL  234 (303)
Q Consensus       228 ~~~~~~~  234 (303)
                      ..+...+
T Consensus       216 ~~~~~~l  222 (467)
T 1zk7_A          216 PAIGEAV  222 (467)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444333

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.86  E-value=6.1e-23  Score=188.05  Aligned_cols=208  Identities=17%  Similarity=0.228  Sum_probs=126.7

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC-CCCceEEecCc----ccccCCCCCCCCC--
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAK----QFCQLPHLPFPSS--   73 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~----~~~~~~~~~~~~~--   73 (303)
                      |+.++..+||+|||||++|+++|..|++.|.+|+|||++ .+||.|.+. +.+...+....    .......+.+...  
T Consensus         5 m~~~~~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~   83 (479)
T 2hqm_A            5 MSTNTKHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLP   83 (479)
T ss_dssp             -----CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSC
T ss_pred             ccCccccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccc
Confidence            444445689999999999999999999999999999998 578887531 11111000000    0000111111100  


Q ss_pred             --C-CCCCCHHHHHHHHH-----------HHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeC
Q 022090           74 --Y-PMFVSRAQFIEHLD-----------HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR  139 (303)
Q Consensus        74 --~-~~~~~~~~l~~~l~-----------~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad  139 (303)
                        . ....+...+.++..           ...+..+++.  +.+ .++.+  +  ...+.|...++     +..+ +.||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g-~~~~i--~--~~~~~v~~~~g-----~~~~-~~~d  150 (479)
T 2hqm_A           84 LDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDV--VFG-WARFN--K--DGNVEVQKRDN-----TTEV-YSAN  150 (479)
T ss_dssp             CSGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEE--EEE-EEEEC--T--TSCEEEEESSS-----CCEE-EEEE
T ss_pred             cccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEe-EEEEe--e--CCEEEEEeCCC-----cEEE-EEeC
Confidence              0 01223344443332           2333444432  433 34433  2  23466665443     1137 8999


Q ss_pred             EEEEccCCCCCCCCC-CCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeec
Q 022090          140 FLVVASGETTNPFTP-DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (303)
Q Consensus       140 ~vIlAtG~~~~p~~p-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~  218 (303)
                      +||+|||  +.|..| ++||.+..          +++.++.. ....+++++|||+|.+|+|+|..|++.|.+||+++|.
T Consensus       151 ~lviAtG--s~p~~p~~i~g~~~~----------~~~~~~~~-l~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~  217 (479)
T 2hqm_A          151 HILVATG--GKAIFPENIPGFELG----------TDSDGFFR-LEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRG  217 (479)
T ss_dssp             EEEECCC--EEECCCTTSTTGGGS----------BCHHHHHH-CSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEcCC--CCCCCCCCCCCcccc----------cchHHHhc-ccccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeC
Confidence            9999999  788888 88887432          23333222 1235789999999999999999999999999999999


Q ss_pred             CeeeeehhhHHHHHHHHh
Q 022090          219 PVHVLSREMVYLGVVLFK  236 (303)
Q Consensus       219 ~~~~lp~~~~~~~~~~~~  236 (303)
                      + .++|..+.+++..+.+
T Consensus       218 ~-~~l~~~d~~~~~~l~~  234 (479)
T 2hqm_A          218 E-TVLRKFDECIQNTITD  234 (479)
T ss_dssp             S-SSCTTSCHHHHHHHHH
T ss_pred             C-ccccccCHHHHHHHHH
Confidence            8 7777766555544433

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.86  E-value=1.5e-21  Score=178.61  Aligned_cols=204  Identities=11%  Similarity=0.108  Sum_probs=131.2

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC-CCCceEEecCc----cccc-CCCCCCCCCCCCCC
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAK----QFCQ-LPHLPFPSSYPMFV   78 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~   78 (303)
                      ..++||+|||||++|+++|..|++.|++|+|||+++.+||.|... +.+...+....    .+.. +..+..+.. ....
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~-~~~~   82 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVS-NVEI   82 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEES-CEEE
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccC-CCcc
Confidence            346899999999999999999999999999999998899987532 11110000000    0000 000000000 0001


Q ss_pred             CHHH-----------HHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           79 SRAQ-----------FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        79 ~~~~-----------l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      +...           +...+...+++.+++.  ++++.+. +  +.  ..+.|.+.++     +..+ +.||+||+||| 
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~--~~g~~~~-~--~~--~~~~v~~~~G-----~~~~-i~~d~lIiAtG-  148 (470)
T 1dxl_A           83 DLAAMMGQKDKAVSNLTRGIEGLFKKNKVTY--VKGYGKF-V--SP--SEISVDTIEG-----ENTV-VKGKHIIIATG-  148 (470)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEE--EESCEEE-E--ET--TEEEECCSSS-----CCEE-EECSEEEECCC-
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEeEEEE-e--cC--CEEEEEeCCC-----ceEE-EEcCEEEECCC-
Confidence            1112           2233444555667654  7776543 3  22  4566665443     1156 89999999999 


Q ss_pred             CCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhh
Q 022090          148 TTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (303)
Q Consensus       148 ~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~  227 (303)
                       +.|..|+++|.+..        .++++.+... ....+++++|||+|.+|+|+|..|.+.|.+||+++|++ .++|..+
T Consensus       149 -s~p~~p~~~g~~~~--------~v~~~~~~~~-~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~  217 (470)
T 1dxl_A          149 -SDVKSLPGVTIDEK--------KIVSSTGALA-LSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS-EIVPTMD  217 (470)
T ss_dssp             -EEECCBTTBCCCSS--------SEECHHHHTT-CSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTTSC
T ss_pred             -CCCCCCCCCCCCcc--------cEEeHHHhhh-hhhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-ccccccc
Confidence             77888888876431        3566655544 22357999999999999999999999999999999998 7777655


Q ss_pred             HHHHHHH
Q 022090          228 VYLGVVL  234 (303)
Q Consensus       228 ~~~~~~~  234 (303)
                      .++...+
T Consensus       218 ~~~~~~l  224 (470)
T 1dxl_A          218 AEIRKQF  224 (470)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554433

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.85  E-value=1.7e-21  Score=180.28  Aligned_cols=199  Identities=16%  Similarity=0.169  Sum_probs=133.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC-CCCceEEecCc----ccccCCCCC-CCCCCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAK----QFCQLPHLP-FPSSYPMFVS   79 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~   79 (303)
                      .++||+|||||++|+++|..|++.|.+|+|||+++.+||.|.+. +.+...+....    ....+..+. ++.....+++
T Consensus        42 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~  121 (523)
T 1mo9_A           42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVG  121 (523)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhhh
Confidence            45899999999999999999999999999999998889887532 11111000000    000011111 2222233445


Q ss_pred             HHHHHHHHHH-------HH-----HHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           80 RAQFIEHLDH-------YV-----SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        80 ~~~l~~~l~~-------~~-----~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      ..++.+++..       ..     +..+++.  +++.+++.++.      ++|.+. +       .. +.||+||+||| 
T Consensus       122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~--~~~~~v~~i~~------~~v~~~-g-------~~-~~~d~lViATG-  183 (523)
T 1mo9_A          122 IKEVVDLFRAGRNGPHGIMNFQSKEQLNLEY--ILNCPAKVIDN------HTVEAA-G-------KV-FKAKNLILAVG-  183 (523)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHTSCCCE--EESSCCEEEET------TEEEET-T-------EE-EEBSCEEECCC-
T ss_pred             HHHHHHHHHhhhhhhhhhhhhcccccCCcEE--EEeeEEEEeeC------CEEEEC-C-------EE-EEeCEEEECCC-
Confidence            6777776653       33     5556654  54667776642      245553 2       57 89999999999 


Q ss_pred             CCCCCCCCCCCccccccCCCCCccEEecccCC-CCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehh
Q 022090          148 TTNPFTPDIRGLCSFCSSATGTGEVIHSTQYK-NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE  226 (303)
Q Consensus       148 ~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~  226 (303)
                       +.|..|+++|.+.       . .++++.++. ......+++++|||+|.+|+|+|..+.+.|.+||++++.+ .++|..
T Consensus       184 -s~p~~p~i~G~~~-------~-~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~-~~l~~~  253 (523)
T 1mo9_A          184 -AGPGTLDVPGVNA-------K-GVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE-PLKLIK  253 (523)
T ss_dssp             -EECCCCCSTTTTS-------B-TEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC-TTTTCC
T ss_pred             -CCCCCCCCCCccc-------C-cEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-cccccc
Confidence             7888899998754       1 245655544 3222233999999999999999999999999999999998 676654


Q ss_pred             hHHHHH
Q 022090          227 MVYLGV  232 (303)
Q Consensus       227 ~~~~~~  232 (303)
                      +.++..
T Consensus       254 ~~~~~~  259 (523)
T 1mo9_A          254 DNETRA  259 (523)
T ss_dssp             SHHHHH
T ss_pred             cHHHHH
Confidence            444433

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.85  E-value=4e-21  Score=175.84  Aligned_cols=203  Identities=12%  Similarity=0.088  Sum_probs=130.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC-CCCceEEecCcc----cc--cCCCCCCCCCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAKQ----FC--QLPHLPFPSSYPMFV   78 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~   78 (303)
                      .++||+|||||++|+++|..|++.|.+|+|||+++.+||.|... +.+...+.....    +.  .+..+.++.. ....
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~-~~~~   83 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMS-EVRL   83 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEES-CEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccC-CCcc
Confidence            35799999999999999999999999999999998899987542 111110000000    00  0000000000 0011


Q ss_pred             CHHHHHHH-----------HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           79 SRAQFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        79 ~~~~l~~~-----------l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      +...+..+           +...++..+++.  +.++. ..+  +.  ..+.|...++.     ..+ +.||+||+||| 
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~--~~g~~-~~~--~~--~~~~v~~~~gg-----~~~-~~~d~lViAtG-  149 (474)
T 1zmd_A           84 NLDKMMEQKSTAVKALTGGIAHLFKQNKVVH--VNGYG-KIT--GK--NQVTATKADGG-----TQV-IDTKNILIATG-  149 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESEE-EEE--ET--TEEEEECTTSC-----EEE-EEEEEEEECCC-
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEEE-EEe--cC--CEEEEEecCCC-----cEE-EEeCEEEECCC-
Confidence            22333332           244455566654  66653 333  22  45667654311     146 89999999999 


Q ss_pred             CCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeee-hh
Q 022090          148 TTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS-RE  226 (303)
Q Consensus       148 ~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp-~~  226 (303)
                       +.|..|+++|.+..        .++++.++... ...+++++|||+|.+|+|+|..|++.|.+||++++++ +++| ..
T Consensus       150 -s~p~~p~i~g~~~~--------~v~t~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~  218 (474)
T 1zmd_A          150 -SEVTPFPGITIDED--------TIVSSTGALSL-KKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLG-HVGGVGI  218 (474)
T ss_dssp             -EEECCCTTCCCCSS--------SEECHHHHTTC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSCSSC
T ss_pred             -CCCCCCCCCCCCcC--------cEEcHHHHhhc-cccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccC-ccCCccc
Confidence             77888888886531        35666655542 2347999999999999999999999999999999998 7777 54


Q ss_pred             hHHHHHHH
Q 022090          227 MVYLGVVL  234 (303)
Q Consensus       227 ~~~~~~~~  234 (303)
                      +.++...+
T Consensus       219 ~~~~~~~l  226 (474)
T 1zmd_A          219 DMEISKNF  226 (474)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            44444433

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.85  E-value=3.6e-22  Score=182.97  Aligned_cols=198  Identities=20%  Similarity=0.206  Sum_probs=126.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecC----cccccCCCCCCCCCCCCCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLA----KQFCQLPHLPFPSSYPMFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   81 (303)
                      .+||+|||||++|+++|..|++.|.+|+|||++ .+||.|.+ .+.+...+...    .....+..+.++.. ....+..
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~   97 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSC-EGKFNWR   97 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCC-CCCCCHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCC-CCccCHH
Confidence            589999999999999999999999999999987 57776543 22222111000    01111122222211 1233455


Q ss_pred             HHHHHHHHHH-----------HHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           82 QFIEHLDHYV-----------SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        82 ~l~~~l~~~~-----------~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      .+.++...++           +..+++.  ..+. +..++    ...+.|... +       .+ +.||+||+|||  +.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g~-~~~~~----~~~~~v~~~-g-------~~-~~~d~lviAtG--~~  159 (478)
T 3dk9_A           98 VIKEKRDAYVSRLNAIYQNNLTKSHIEI--IRGH-AAFTS----DPKPTIEVS-G-------KK-YTAPHILIATG--GM  159 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESC-EEECS----CSSCEEEET-T-------EE-EECSCEEECCC--EE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcEE--EEeE-EEEee----CCeEEEEEC-C-------EE-EEeeEEEEccC--CC
Confidence            5555544433           3334332  3332 22221    123566632 2       57 89999999999  78


Q ss_pred             CCCC---CCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhh
Q 022090          151 PFTP---DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (303)
Q Consensus       151 p~~p---~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~  227 (303)
                      |..|   ++||.+..          +++.++.. ....+++++|||+|.+|+|+|..|++.|.+||+++|.+ .++|..+
T Consensus       160 p~~p~~~~i~G~~~~----------~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d  227 (478)
T 3dk9_A          160 PSTPHESQIPGASLG----------ITSDGFFQ-LEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD-KVLRSFD  227 (478)
T ss_dssp             ECCCCTTTSTTGGGS----------BCHHHHTT-CCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSC
T ss_pred             CCCCCcCCCCCCcee----------EchHHhhc-hhhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCC-ccccccC
Confidence            8888   88887632          34444433 23347999999999999999999999999999999998 6777766


Q ss_pred             HHHHHHHHh
Q 022090          228 VYLGVVLFK  236 (303)
Q Consensus       228 ~~~~~~~~~  236 (303)
                      .++...+.+
T Consensus       228 ~~~~~~~~~  236 (478)
T 3dk9_A          228 SMISTNCTE  236 (478)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            655544433

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.85  E-value=9e-22  Score=178.97  Aligned_cols=185  Identities=19%  Similarity=0.292  Sum_probs=121.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      ++||+|||||++|+++|..|++.  +.+|+|||+++..+....                .++.     .........++.
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~----------------~~p~-----~~~~~~~~~~~~   61 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPC----------------GIPY-----VVEGLSTPDKLM   61 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCc----------------CCcc-----ccCCCCCHHHhh
Confidence            47999999999999999999998  789999999986542210                0000     001111222333


Q ss_pred             HHH-HHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022090           85 EHL-DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (303)
Q Consensus        85 ~~l-~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~  163 (303)
                      .+. ..+.++++++.  +++++|++++..    .+.|...++      ..+ +.||+||+|||  +.|..|++||.+.  
T Consensus        62 ~~~~~~~~~~~gi~v--~~~~~v~~i~~~----~~~v~~~~g------~~~-~~~d~lviAtG--~~p~~p~i~G~~~--  124 (449)
T 3kd9_A           62 YYPPEVFIKKRGIDL--HLNAEVIEVDTG----YVRVRENGG------EKS-YEWDYLVFANG--ASPQVPAIEGVNL--  124 (449)
T ss_dssp             ----CTHHHHTTCEE--ETTCEEEEECSS----EEEEECSSS------EEE-EECSEEEECCC--EEECCCSCBTTTS--
T ss_pred             hcCHHHHHHhcCcEE--EecCEEEEEecC----CCEEEECCc------eEE-EEcCEEEECCC--CCCCCCCCCCCCC--
Confidence            333 33446677665  889999988543    366765432      147 89999999999  7888889988753  


Q ss_pred             cCCCCCccEEecccCCC-------CCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh-hhHHHHHHHH
Q 022090          164 SSATGTGEVIHSTQYKN-------GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR-EMVYLGVVLF  235 (303)
Q Consensus       164 ~~~~~~g~~~~~~~~~~-------~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~-~~~~~~~~~~  235 (303)
                           .+ ++.......       .....+++++|||+|.+|+|+|..+.+.|.+||+++|.+ ++++. .+.++...+.
T Consensus       125 -----~~-v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~~l~  197 (449)
T 3kd9_A          125 -----KG-VFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGE-RVLRRSFDKEVTDILE  197 (449)
T ss_dssp             -----TT-EECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-STTTTTSCHHHHHHHH
T ss_pred             -----CC-EEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCC-ccchhhcCHHHHHHHH
Confidence                 22 222221110       112357899999999999999999999999999999998 67766 5544444433


Q ss_pred             h
Q 022090          236 K  236 (303)
Q Consensus       236 ~  236 (303)
                      +
T Consensus       198 ~  198 (449)
T 3kd9_A          198 E  198 (449)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.85  E-value=2.5e-21  Score=176.99  Aligned_cols=203  Identities=14%  Similarity=0.134  Sum_probs=129.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC-CCCceEEecCcc----ccc-CCCCCCCCCCCCCCCH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAKQ----FCQ-LPHLPFPSSYPMFVSR   80 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~   80 (303)
                      ++||+|||||++|+++|..|++.|.+|+|||+++.+||.|.+. +.+...+.....    +.. +..+..+.......+.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDS   81 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence            4799999999999999999999999999999998899987532 111110000000    000 0000000000001122


Q ss_pred             HHHHH-----------HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           81 AQFIE-----------HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        81 ~~l~~-----------~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      ..+..           .+...+++.+++.  +.++.+ .+  +.  ..+.|...++     +..+ +.||+||+|||  +
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~--~~g~~~-~i--~~--~~~~v~~~~G-----~~~~-~~~d~lviAtG--~  146 (468)
T 2qae_A           82 AKMQQQKERAVKGLTGGVEYLFKKNKVTY--YKGEGS-FE--TA--HSIRVNGLDG-----KQEM-LETKKTIIATG--S  146 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEE--EEEEEE-EE--ET--TEEEEEETTS-----CEEE-EEEEEEEECCC--E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEEEE-Ee--eC--CEEEEEecCC-----ceEE-EEcCEEEECCC--C
Confidence            23322           2344555566654  555533 33  22  4566665443     2256 89999999999  7


Q ss_pred             CCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHH
Q 022090          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (303)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~  229 (303)
                      .|..|+++|.+.       . .++++.+... ....+++++|||+|.+|+|+|..|.+.|.+||+++|.+ +++|..+.+
T Consensus       147 ~p~~p~~~g~~~-------~-~v~t~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d~~  216 (468)
T 2qae_A          147 EPTELPFLPFDE-------K-VVLSSTGALA-LPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAP-RCAPTLDED  216 (468)
T ss_dssp             EECCBTTBCCCS-------S-SEECHHHHHT-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCHH
T ss_pred             CcCCCCCCCCCc-------C-ceechHHHhh-cccCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCC-cccccCCHH
Confidence            788888887643       1 2455555443 22357999999999999999999999999999999998 777765555


Q ss_pred             HHHHH
Q 022090          230 LGVVL  234 (303)
Q Consensus       230 ~~~~~  234 (303)
                      +...+
T Consensus       217 ~~~~l  221 (468)
T 2qae_A          217 VTNAL  221 (468)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.85  E-value=2.8e-22  Score=184.10  Aligned_cols=202  Identities=16%  Similarity=0.162  Sum_probs=127.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEec--------CCCCCCccCc-CCCCceEEecCcc----cccCCCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILER--------ENCYASIWKK-YSYDRLRLHLAKQ----FCQLPHLPFPS   72 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~--------~~~~gg~w~~-~~~~~~~~~~~~~----~~~~~~~~~~~   72 (303)
                      ..+||+|||||++|+++|..|++.|.+|+|||+        ...+||+|.+ .+.|+..+.....    ......+.+..
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~   84 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV   84 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCccc
Confidence            458999999999999999999999999999997        5568887753 2222221110000    00011111111


Q ss_pred             CCCCCCCHHHHHHHHHHHHH-----------HcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEE
Q 022090           73 SYPMFVSRAQFIEHLDHYVS-----------HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL  141 (303)
Q Consensus        73 ~~~~~~~~~~l~~~l~~~~~-----------~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v  141 (303)
                      ..+...+...+.++...+.+           ..+++   .+...+..++    ...+.|...++     +..+ +.||+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~---~i~g~~~~~~----~~~v~v~~~~g-----~~~~-~~~d~l  151 (488)
T 3dgz_A           85 AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVK---YFNIKASFVD----EHTVRGVDKGG-----KATL-LSAEHI  151 (488)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EECCEEEESS----SSEEEEECTTS-----CEEE-EEEEEE
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEEEEEEcc----CCeEEEEeCCC-----ceEE-EECCEE
Confidence            11234455566666554433           22332   2233333221    23344544332     2257 899999


Q ss_pred             EEccCCCCCCCCCC-CCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCe
Q 022090          142 VVASGETTNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (303)
Q Consensus       142 IlAtG~~~~p~~p~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~  220 (303)
                      |+|||  +.|..|+ +||.+..         .+++.++.. ....+++++|||+|.+|+|+|..|++.|.+||+++|.+ 
T Consensus       152 ViATG--s~p~~p~~i~G~~~~---------~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-  218 (488)
T 3dgz_A          152 VIATG--GRPRYPTQVKGALEY---------GITSDDIFW-LKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI-  218 (488)
T ss_dssp             EECCC--EEECCCSSCBTHHHH---------CBCHHHHTT-CSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-
T ss_pred             EEcCC--CCCCCCCCCCCcccc---------cCcHHHHHh-hhhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc-
Confidence            99999  8888998 9997543         234444433 33457899999999999999999999999999999864 


Q ss_pred             eeeehhhHHHHHHH
Q 022090          221 HVLSREMVYLGVVL  234 (303)
Q Consensus       221 ~~lp~~~~~~~~~~  234 (303)
                       ++|..+.++...+
T Consensus       219 -~l~~~d~~~~~~l  231 (488)
T 3dgz_A          219 -PLRGFDQQMSSLV  231 (488)
T ss_dssp             -SSTTSCHHHHHHH
T ss_pred             -ccccCCHHHHHHH
Confidence             5666555554443

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.85  E-value=5e-22  Score=186.51  Aligned_cols=192  Identities=16%  Similarity=0.257  Sum_probs=133.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (303)
                      .+++|+|||||++|+++|..|++.  |.+|+|||+++..+       |....+  +..   +...       .......+
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~-------~~~~~l--p~~---~~g~-------~~~~~~~~   95 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS-------FANCGL--PYY---IGGV-------ITERQKLL   95 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS-------BCGGGH--HHH---HTTS-------SCCGGGGB
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc-------ccCCCC--chh---hcCc-------CCChHHhh
Confidence            357999999999999999999998  89999999998764       111000  000   0000       00112234


Q ss_pred             HHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022090           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (303)
Q Consensus        84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~  163 (303)
                      ..++.++.+++++..  +++++|++++.+.  ..+.+.....+    +... +.||+||+|||  +.|..|++||.+.. 
T Consensus        96 ~~~~~~~~~~~gi~v--~~~~~V~~id~~~--~~v~v~~~~~g----~~~~-~~~d~lviAtG--~~p~~p~i~G~~~~-  163 (588)
T 3ics_A           96 VQTVERMSKRFNLDI--RVLSEVVKINKEE--KTITIKNVTTN----ETYN-EAYDVLILSPG--AKPIVPSIPGIEEA-  163 (588)
T ss_dssp             SSCHHHHHHHTTCEE--ECSEEEEEEETTT--TEEEEEETTTC----CEEE-EECSEEEECCC--EEECCCCCTTTTTC-
T ss_pred             ccCHHHHHHhcCcEE--EECCEEEEEECCC--CEEEEeecCCC----CEEE-EeCCEEEECCC--CCCCCCCCCCcccC-
Confidence            456777777888765  8999999998655  44554432111    2246 89999999999  78889999998433 


Q ss_pred             cCCCCCccEEecccCCCCC-------CCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHH
Q 022090          164 SSATGTGEVIHSTQYKNGK-------PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLF  235 (303)
Q Consensus       164 ~~~~~~g~~~~~~~~~~~~-------~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~  235 (303)
                           .+ +++.....+..       ...+++++|||+|.+|+|+|..+++.|.+||+++|.+ +++|..+.++...+.
T Consensus       164 -----~~-v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~l~  235 (588)
T 3ics_A          164 -----KA-LFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMAN-QVMPPIDYEMAAYVH  235 (588)
T ss_dssp             -----TT-EEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSCHHHHHHHH
T ss_pred             -----CC-eEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-cccccCCHHHHHHHH
Confidence                 32 34433322211       1357999999999999999999999999999999998 788876555544443

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.85  E-value=3.4e-22  Score=186.82  Aligned_cols=188  Identities=16%  Similarity=0.196  Sum_probs=129.2

Q ss_pred             CcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ++|+|||||++|+++|..|++.  +.+|+|||+++..+       |....+  +..   +...       .......+..
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~-------~~~~~l--~~~---~~~~-------~~~~~~~~~~   62 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS-------FANCGL--PYH---ISGE-------IAQRSALVLQ   62 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS-------BCGGGH--HHH---HTSS-------SCCGGGGBCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc-------ccccCc--hHH---hcCC-------cCChHHhhcc
Confidence            5899999999999999999998  78999999998764       111000  000   0000       0011223445


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      ++..+.+++++..  +++++|++++...  ..+.+.....+    +..+ +.||+||+|||  +.|..|++||.+..   
T Consensus        63 ~~~~~~~~~~i~~--~~~~~V~~id~~~--~~v~~~~~~~g----~~~~-~~~d~lviAtG--~~p~~p~ipG~~~~---  128 (565)
T 3ntd_A           63 TPESFKARFNVEV--RVKHEVVAIDRAA--KLVTVRRLLDG----SEYQ-ESYDTLLLSPG--AAPIVPPIPGVDNP---  128 (565)
T ss_dssp             CHHHHHHHHCCEE--ETTEEEEEEETTT--TEEEEEETTTC----CEEE-EECSEEEECCC--EEECCCCCTTCCST---
T ss_pred             CHHHHHHhcCcEE--EECCEEEEEECCC--CEEEEEecCCC----CeEE-EECCEEEECCC--CCCCCCCCCCCCCC---
Confidence            5666677778765  8899999997655  44554432111    2257 89999999999  78889999997642   


Q ss_pred             CCCCccEEecccCCCC-------CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHH
Q 022090          166 ATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVL  234 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~  234 (303)
                           .+++.......       ....+++++|||+|.+|+|+|..|++.|.+||+++|.+ .++|..+.++...+
T Consensus       129 -----~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~l  198 (565)
T 3ntd_A          129 -----LTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELAD-QVMTPVDREMAGFA  198 (565)
T ss_dssp             -----TEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSCTTSCHHHHHHH
T ss_pred             -----CEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCC-ccchhcCHHHHHHH
Confidence                 22332221110       11347899999999999999999999999999999999 77776555554443

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.85  E-value=5.1e-21  Score=175.87  Aligned_cols=206  Identities=16%  Similarity=0.141  Sum_probs=129.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhh-CCCCeEEEe--------cCCCCCCccCc-CCCCceEEecCcc----cccCCCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSL-QSIPYVILE--------RENCYASIWKK-YSYDRLRLHLAKQ----FCQLPHLPFPS   72 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~-~g~~v~iie--------~~~~~gg~w~~-~~~~~~~~~~~~~----~~~~~~~~~~~   72 (303)
                      ++||+|||||++|+++|..|++ .|.+|+|||        +...+||+|.+ .++|...+.....    +..+..+.+..
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~   86 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEF   86 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEEC
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCccc
Confidence            5799999999999999999999 999999999        35678887754 2222211100000    00011111110


Q ss_pred             CCC-CCCCHHHHHHHHHHHH-----------HHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCC-CceeEEEEee
Q 022090           73 SYP-MFVSRAQFIEHLDHYV-----------SHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSP-GREIEEYYSG  138 (303)
Q Consensus        73 ~~~-~~~~~~~l~~~l~~~~-----------~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~-~~~~~~~~~a  138 (303)
                      ..+ ...+...+.++..+++           +.. +++.  +.++ ++.++  .    ++|.+.+..+. ...... +.|
T Consensus        87 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~--~~g~-~~~i~--~----~~v~v~~~~~~~~~~~~~-~~~  156 (495)
T 2wpf_A           87 DGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDF--FLGW-GSLES--K----NVVVVRETADPKSAVKER-LQA  156 (495)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEE--EESE-EEEEE--T----TEEEEESSSSTTSCEEEE-EEE
T ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE--EEeE-EEEee--C----CEEEEeecCCccCCCCeE-EEc
Confidence            000 0234455655554433           233 4433  4443 44442  2    45665521110 000157 899


Q ss_pred             CEEEEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhc---cCceEEE
Q 022090          139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH---AAKTSLV  215 (303)
Q Consensus       139 d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~---g~~vt~~  215 (303)
                      |+||+|||  +.|..|++||.+..          +++.++.. ....+++++|||+|.+|+|+|..|++.   |.+||++
T Consensus       157 d~lViATG--s~p~~p~i~G~~~~----------~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv  223 (495)
T 2wpf_A          157 DHILLATG--SWPQMPAIPGIEHC----------ISSNEAFY-LPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLC  223 (495)
T ss_dssp             EEEEECCC--EEECCCCCTTGGGC----------EEHHHHTT-CSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CEEEEeCC--CCcCCCCCCCcccc----------ccHHHHHh-hhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEE
Confidence            99999999  78888889987532          55555544 223578999999999999999999999   9999999


Q ss_pred             eecCeeeeehhhHHHHHHHHh
Q 022090          216 VRSPVHVLSREMVYLGVVLFK  236 (303)
Q Consensus       216 ~r~~~~~lp~~~~~~~~~~~~  236 (303)
                      +|.+ +++|..+.+++..+.+
T Consensus       224 ~~~~-~~l~~~d~~~~~~l~~  243 (495)
T 2wpf_A          224 YRNN-LILRGFDETIREEVTK  243 (495)
T ss_dssp             ESSS-SSCTTSCHHHHHHHHH
T ss_pred             EcCC-ccccccCHHHHHHHHH
Confidence            9998 7777766555544433

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.84  E-value=4.1e-21  Score=176.79  Aligned_cols=200  Identities=19%  Similarity=0.241  Sum_probs=120.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC-CCCceEEecC----cccccCCCCCCCCCCCCCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLA----KQFCQLPHLPFPSSYPMFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   81 (303)
                      ++||+|||||++|+++|..|++.|.+|+|||++. .||.|.+. +.+...+...    ........+.+...  ...+..
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~--~~~~~~   78 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTK--FSFNLP   78 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCC--CCCCHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccC--CccCHH
Confidence            3799999999999999999999999999999985 78887542 1121100000    00000011111100  112333


Q ss_pred             HHHH-----------HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEe--------ecCCCCceeEEEEeeCEEE
Q 022090           82 QFIE-----------HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS--------NLLSPGREIEEYYSGRFLV  142 (303)
Q Consensus        82 ~l~~-----------~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~--------~~~~~~~~~~~~~~ad~vI  142 (303)
                      .+..           ++...++..+++.  +.++. ..++.    ..+.+...        ....+    .+ +.||+||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g~~-~~id~----~~v~v~~~~~~~~~~~~~~~~----~~-~~~d~lV  146 (500)
T 1onf_A           79 LLVERRDKYIQRLNNIYRQNLSKDKVDL--YEGTA-SFLSE----NRILIKGTKDNNNKDNGPLNE----EI-LEGRNIL  146 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESCC-CCC-----------------------------------CBSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEeEE-EEeeC----CEEEEEeccccccccccCCCc----eE-EEeCEEE
Confidence            3332           2333344556544  44432 22221    22333220        00001    46 8999999


Q ss_pred             EccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeee
Q 022090          143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV  222 (303)
Q Consensus       143 lAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~  222 (303)
                      +|||  +.|..|++||.+..          +++.++.....  +++++|||+|.+|+|+|..|++.|.+||+++|.+ ++
T Consensus       147 iAtG--s~p~~p~i~G~~~~----------~~~~~~~~~~~--~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~  211 (500)
T 1onf_A          147 IAVG--NKPVFPPVKGIENT----------ISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN-RI  211 (500)
T ss_dssp             ECCC--CCBCCCSCTTGGGC----------EEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS-SS
T ss_pred             ECCC--CCCCCCCCCCCCcc----------cCHHHHhccCC--CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCC-cc
Confidence            9999  78888999987532          56655554332  8999999999999999999999999999999998 77


Q ss_pred             eehhhHHHHHHHHh
Q 022090          223 LSREMVYLGVVLFK  236 (303)
Q Consensus       223 lp~~~~~~~~~~~~  236 (303)
                      +|..+.+++..+.+
T Consensus       212 l~~~d~~~~~~l~~  225 (500)
T 1onf_A          212 LRKFDESVINVLEN  225 (500)
T ss_dssp             CTTSCHHHHHHHHH
T ss_pred             CcccchhhHHHHHH
Confidence            78766655544433

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.84  E-value=2e-21  Score=177.72  Aligned_cols=193  Identities=13%  Similarity=0.181  Sum_probs=113.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      ++||+|||||++|+++|..|++.  |.+|+|||+++..+  |.....+..   ....      ...+.  ..++...++.
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~--~~~~gl~~~---~~g~------~~~~~--~~~~~~~~~~   69 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS--YGGCGIPYY---VSGE------VSNIE--SLQATPYNVV   69 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc--ccccccchh---hcCC------CCchH--Hhccccchhc
Confidence            36999999999999999999998  89999999998754  111000000   0000      00000  0001111245


Q ss_pred             HHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (303)
Q Consensus        85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~  164 (303)
                      .+...+.+.+++..  +++++|++++...  ..+.+.....  +  +... +.||+||+|||  +.|..|++||.+.   
T Consensus        70 ~~~~~~~~~~gi~~--~~~~~V~~id~~~--~~v~~~~~~~--g--~~~~-~~~d~lviAtG--~~p~~p~i~G~~~---  135 (472)
T 3iwa_A           70 RDPEFFRINKDVEA--LVETRAHAIDRAA--HTVEIENLRT--G--ERRT-LKYDKLVLALG--SKANRPPVEGMDL---  135 (472)
T ss_dssp             -----------CEE--ECSEEEEEEETTT--TEEEEEETTT--C--CEEE-EECSEEEECCC--EEECCCSCTTTTS---
T ss_pred             cCHHHHhhhcCcEE--EECCEEEEEECCC--CEEEEeecCC--C--CEEE-EECCEEEEeCC--CCcCCCCCCCCCC---
Confidence            56666666667655  8899999997655  4454443111  1  2247 89999999999  7888899998762   


Q ss_pred             CCCCCccEEecccCCCC-------CCCCCCeEEEECCCccHHHHHHHHhhc-cCceEEEeecCeeeee-hhhHHHHH
Q 022090          165 SATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANH-AAKTSLVVRSPVHVLS-REMVYLGV  232 (303)
Q Consensus       165 ~~~~~g~~~~~~~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~-g~~vt~~~r~~~~~lp-~~~~~~~~  232 (303)
                          .+ +++.....+.       ....+++++|||+|.+|+|+|..+.+. |.+||+++|.+ .++| ..+..+..
T Consensus       136 ----~~-v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~-~~l~~~~~~~~~~  206 (472)
T 3iwa_A          136 ----AG-VTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELAD-QIMPGFTSKSLSQ  206 (472)
T ss_dssp             ----BT-EEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSS-SSSTTTSCHHHHH
T ss_pred             ----CC-EEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccC-cccccccCHHHHH
Confidence                22 2332221110       113478999999999999999999999 99999999998 7777 44444433

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.84  E-value=6.5e-21  Score=173.91  Aligned_cols=194  Identities=15%  Similarity=0.151  Sum_probs=123.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC-CCCceEEecCccc----ccCCCCCCCCCCCCCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAKQF----CQLPHLPFPSSYPMFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   81 (303)
                      ++||+|||||++|+++|..|++.|.+|+|||+++ +||+|.+. +.+...+......    ..+..+.++ . ....+..
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~-~-~~~~~~~   82 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLK-A-KPELDLK   82 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEE-C-CCEECHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCC-C-CCCcCHH
Confidence            5899999999999999999999999999999988 88877532 1111100000000    000000000 0 0112223


Q ss_pred             HHHHH-----------HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           82 QFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        82 ~l~~~-----------l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      .+..+           +...++..+++.  +.++.+. +  +.    ++|.+. +       .+ +.||+||+|||  +.
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~--~~g~~~~-~--~~----~~v~v~-g-------~~-~~~d~lViATG--s~  142 (464)
T 2eq6_A           83 KLGGWRDQVVKKLTGGVGTLLKGNGVEL--LRGFARL-V--GP----KEVEVG-G-------ER-YGAKSLILATG--SE  142 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESCEEE-E--ET----TEEEET-T-------EE-EEEEEEEECCC--EE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EeeeEEE-c--cC----CEEEEc-c-------EE-EEeCEEEEcCC--CC
Confidence            33322           233445556554  6665432 3  22    244443 2       56 89999999999  77


Q ss_pred             CCCCC-CCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHH
Q 022090          151 PFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (303)
Q Consensus       151 p~~p~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~  229 (303)
                      |..|+ +++..          .++++.+........+++++|||+|.+|+|+|..|++.|.+||++++.+ +++|..+.+
T Consensus       143 p~~p~gi~~~~----------~v~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~  211 (464)
T 2eq6_A          143 PLELKGFPFGE----------DVWDSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMP-EILPQGDPE  211 (464)
T ss_dssp             ECCBTTBCCSS----------SEECHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCHH
T ss_pred             CCCCCCCCCCC----------cEEcHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCC-ccccccCHH
Confidence            77775 65521          3466665554333257999999999999999999999999999999998 777765555


Q ss_pred             HHHHH
Q 022090          230 LGVVL  234 (303)
Q Consensus       230 ~~~~~  234 (303)
                      +...+
T Consensus       212 ~~~~l  216 (464)
T 2eq6_A          212 TAALL  216 (464)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.84  E-value=1.3e-20  Score=171.61  Aligned_cols=197  Identities=17%  Similarity=0.195  Sum_probs=126.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecC----cccccCCC---CCCCCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLA----KQFCQLPH---LPFPSSYPMF   77 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~   77 (303)
                      .++||+|||||++|+++|..|++.|.+|+|||+ +.+||.|.+ .+.|+..+...    ..+..+..   +..+.. ...
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~-~~~   81 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVA-SPR   81 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCC-CCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccC-CCc
Confidence            358999999999999999999999999999999 678887753 22221110000    00001111   111111 112


Q ss_pred             CCHHHHHHHH-----------HHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090           78 VSRAQFIEHL-----------DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (303)
Q Consensus        78 ~~~~~l~~~l-----------~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG  146 (303)
                      .+...+..+.           ....++.+++.  +.++.+. +  +.    ++|.+.+        .+ +.||+||+|||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g~~~~-~--~~----~~v~v~~--------~~-~~~d~lviATG  143 (458)
T 1lvl_A           82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGVKV--VHGWAKV-L--DG----KQVEVDG--------QR-IQCEHLLLATG  143 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE--ECSCEEE-E--ET----TEEEETT--------EE-EECSEEEECCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE--EEEEEEE-c--cC----CEEEEee--------EE-EEeCEEEEeCC
Confidence            3444444442           23445566654  6665443 2  22    3555543        46 89999999999


Q ss_pred             CCCCCCCCC-CCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh
Q 022090          147 ETTNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (303)
Q Consensus       147 ~~~~p~~p~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~  225 (303)
                        +.|..|+ ++    +      .+.++++.+.... ...+++++|||+|.+|+|+|..|++.|.+||++++.+ +++|.
T Consensus       144 --s~p~~~~~~~----~------~~~v~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~  209 (458)
T 1lvl_A          144 --SSSVELPMLP----L------GGPVISSTEALAP-KALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE-RILPT  209 (458)
T ss_dssp             --EEECCBTTBC----C------BTTEECHHHHTCC-SSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTT
T ss_pred             --CCCCCCCCCC----c------cCcEecHHHHhhh-hccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCC-ccccc
Confidence              6676665 44    2      2245666665542 2357999999999999999999999999999999998 77776


Q ss_pred             hhHHHHHHHHh
Q 022090          226 EMVYLGVVLFK  236 (303)
Q Consensus       226 ~~~~~~~~~~~  236 (303)
                      .+.++...+.+
T Consensus       210 ~~~~~~~~l~~  220 (458)
T 1lvl_A          210 YDSELTAPVAE  220 (458)
T ss_dssp             SCHHHHHHHHH
T ss_pred             cCHHHHHHHHH
Confidence            55555544433

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.84  E-value=1.4e-21  Score=179.29  Aligned_cols=201  Identities=18%  Similarity=0.187  Sum_probs=126.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC---C------CCCCccCc-CCCCceEEecCccc----ccCCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE---N------CYASIWKK-YSYDRLRLHLAKQF----CQLPHLPFP   71 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~---~------~~gg~w~~-~~~~~~~~~~~~~~----~~~~~~~~~   71 (303)
                      ..+||+|||||++|+++|..|+++|.+|+|||+.   +      .+||+|.+ .+.|+..+......    .....+.++
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~   87 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWN   87 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCcc
Confidence            4689999999999999999999999999999942   1      37887753 22222111000000    000011111


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHH-----------cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCE
Q 022090           72 SSYPMFVSRAQFIEHLDHYVSH-----------FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRF  140 (303)
Q Consensus        72 ~~~~~~~~~~~l~~~l~~~~~~-----------~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~  140 (303)
                      .......+...+.++...+++.           .+++   .+......++  .  ..+.|...++     + .+ +.||+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~a~~~~--~--~~v~v~~~~g-----~-~~-~~~d~  153 (483)
T 3dgh_A           88 VDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVE---YINGLGSFVD--S--HTLLAKLKSG-----E-RT-ITAQT  153 (483)
T ss_dssp             CCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EECSEEEEEE--T--TEEEEECTTC-----C-EE-EEEEE
T ss_pred             cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEeEEEEcc--C--CEEEEEeCCC-----e-EE-EEcCE
Confidence            1112234566666666554432           2332   2223333332  2  3355544332     1 57 89999


Q ss_pred             EEEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCe
Q 022090          141 LVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (303)
Q Consensus       141 vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~  220 (303)
                      ||+|||  +.|..|++||.+.+         .+++.++.. ....+++++|||+|.+|+|+|..+++.|.+||+++|.  
T Consensus       154 lviATG--s~p~~p~i~G~~~~---------~~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~--  219 (483)
T 3dgh_A          154 FVIAVG--GRPRYPDIPGAVEY---------GITSDDLFS-LDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS--  219 (483)
T ss_dssp             EEECCC--EEECCCSSTTHHHH---------CBCHHHHTT-CSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS--
T ss_pred             EEEeCC--CCcCCCCCCCcccc---------cCcHHHHhh-hhhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC--
Confidence            999999  88899999997543         234444433 3345789999999999999999999999999999984  


Q ss_pred             eeeehhhHHHHHHH
Q 022090          221 HVLSREMVYLGVVL  234 (303)
Q Consensus       221 ~~lp~~~~~~~~~~  234 (303)
                      .++|..+.++...+
T Consensus       220 ~~l~~~d~~~~~~l  233 (483)
T 3dgh_A          220 IVLRGFDQQMAELV  233 (483)
T ss_dssp             CSSTTSCHHHHHHH
T ss_pred             CCCcccCHHHHHHH
Confidence            46666555554443

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.84  E-value=1.4e-20  Score=171.34  Aligned_cols=199  Identities=17%  Similarity=0.205  Sum_probs=127.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC-CCCceEEecC----cccccCCCCCCCCCCCCCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLA----KQFCQLPHLPFPSSYPMFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   81 (303)
                      ++||+|||||++|+++|..|++.|.+|+|+|++ .+||.|.+. +.+...+...    ..+..+..+..+.. ....+..
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~   80 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAE-NVTIDFA   80 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECC-SCEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccC-CCccCHH
Confidence            479999999999999999999999999999998 788877432 1111100000    00000000000000 0001222


Q ss_pred             H-----------HHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           82 Q-----------FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        82 ~-----------l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      .           +..++...+++.+++.  +.++.+. +  +.  +.+.|...++     + .+ +.||+||+|||  +.
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~--~~g~~~~-i--d~--~~v~V~~~~G-----~-~~-i~~d~lViATG--s~  144 (455)
T 1ebd_A           81 KVQEWKASVVKKLTGGVEGLLKGNKVEI--VKGEAYF-V--DA--NTVRVVNGDS-----A-QT-YTFKNAIIATG--SR  144 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCEE--EESEEEE-E--ET--TEEEEEETTE-----E-EE-EECSEEEECCC--EE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEEEEE-c--cC--CeEEEEeCCC-----c-EE-EEeCEEEEecC--CC
Confidence            2           3333445556666554  6666543 3  22  4577766442     1 46 89999999999  77


Q ss_pred             CCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHH
Q 022090          151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL  230 (303)
Q Consensus       151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~  230 (303)
                      |..|+++|.+.         .++++.+... ....+++++|||+|.+|+|+|..|++.|.+||++++.+ .++|..+.++
T Consensus       145 p~~~~~~g~~~---------~v~~~~~~~~-~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~  213 (455)
T 1ebd_A          145 PIELPNFKFSN---------RILDSTGALN-LGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG-EILSGFEKQM  213 (455)
T ss_dssp             ECCBTTBCCCS---------SEECHHHHHT-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTSCHHH
T ss_pred             CCCCCCCCccc---------eEecHHHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-ccccccCHHH
Confidence            88888877542         2455554433 22357999999999999999999999999999999998 7777655444


Q ss_pred             HHHH
Q 022090          231 GVVL  234 (303)
Q Consensus       231 ~~~~  234 (303)
                      ...+
T Consensus       214 ~~~l  217 (455)
T 1ebd_A          214 AAII  217 (455)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.83  E-value=8.1e-21  Score=170.52  Aligned_cols=175  Identities=23%  Similarity=0.267  Sum_probs=115.5

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCC
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFV   78 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (303)
                      |+....++||+|||||++|+++|..|++.|.  +|+++|+++..+       |....  .+..+..-. .  +..  .  
T Consensus         1 M~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~-------~~~~~--~~~~~~~~~-~--~~~--~--   64 (408)
T 2gqw_A            1 MSQEALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP-------YDRPP--LSKDFMAHG-D--AEK--I--   64 (408)
T ss_dssp             -----CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC-------BCSGG--GGTHHHHHC-C--GGG--S--
T ss_pred             CCCCCCCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc-------ccCCC--CCHHHhCCC-c--hhh--h--
Confidence            6555567899999999999999999999998  599999987543       11000  000000000 0  000  0  


Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCC-C
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI-R  157 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~-~  157 (303)
                             ++. .+++++++  ++++++|+.++...    ++|.+.++       .+ +.||+||+|||  +.|..|++ |
T Consensus        65 -------~~~-~~~~~~v~--~~~~~~v~~i~~~~----~~v~~~~g-------~~-~~~d~lviAtG--~~~~~~~i~~  120 (408)
T 2gqw_A           65 -------RLD-CKRAPEVE--WLLGVTAQSFDPQA----HTVALSDG-------RT-LPYGTLVLATG--AAPRALPTLQ  120 (408)
T ss_dssp             -------BCC-CTTSCSCE--EEETCCEEEEETTT----TEEEETTS-------CE-EECSEEEECCC--EEECCCGGGT
T ss_pred             -------hHH-HHHHCCCE--EEcCCEEEEEECCC----CEEEECCC-------CE-EECCEEEECCC--CCCCCCCccC
Confidence                   000 12334544  48888899987643    66777653       46 89999999999  77888888 8


Q ss_pred             CccccccCCCCCccEEecccCC-----CCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh
Q 022090          158 GLCSFCSSATGTGEVIHSTQYK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (303)
Q Consensus       158 g~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~  225 (303)
                      |.+.         .+++.....     ......+++++|||+|.+|+|+|..|.+.|.+||++++.+ +++|+
T Consensus       121 G~~~---------~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~  183 (408)
T 2gqw_A          121 GATM---------PVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP-RLMSR  183 (408)
T ss_dssp             TCSS---------CEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTT
T ss_pred             CCCC---------cEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCC-ccccc
Confidence            8641         123222111     1112347999999999999999999999999999999998 67764

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.83  E-value=6.3e-23  Score=188.48  Aligned_cols=200  Identities=15%  Similarity=0.163  Sum_probs=124.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC-cCCCCceEEecCc----ccccCCCCCCCCCCCCCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAK----QFCQLPHLPFPSSYPMFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~   81 (303)
                      .+||+|||||++|+++|..|++.|.+|+|||++. +||+|. ..+.|+..+....    ....++.+.++.. ....+..
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~   85 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVD-RISVNGK   85 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECS-EEEECHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCC-CCccCHH
Confidence            4799999999999999999999999999999976 777553 2323221111000    0001111111100 1123455


Q ss_pred             HHHHHHHHHHHHcCCC----------ceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCC
Q 022090           82 QFIEHLDHYVSHFNIG----------PSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP  151 (303)
Q Consensus        82 ~l~~~l~~~~~~~~l~----------~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p  151 (303)
                      ++.+++.++.+.+...          .. .+.....-.      +.++|.+.++       .+ +.||+||+|||  +.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~g~a~~~------~~~~v~~~~~-------~~-~~~d~lViATG--s~p  148 (492)
T 3ic9_A           86 AVMKRIQTERDRFVGFVVESVESFDEQD-KIRGFAKFL------DEHTLQVDDH-------SQ-VIAKRIVIATG--SRP  148 (492)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCGGG-EEESCEEEE------ETTEEEETTT-------EE-EEEEEEEECCC--EEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCee-EEEEEEEEe------cCCEEEEcCC-------cE-EEeCEEEEccC--CCC
Confidence            6666665544433110          00 111111111      1245666443       57 89999999999  778


Q ss_pred             CCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHH
Q 022090          152 FTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLG  231 (303)
Q Consensus       152 ~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~  231 (303)
                      ..|++++..        ...++++.+... ....+++++|||+|.+|+|+|..|++.|.+||+++|.+ .++|..+.++.
T Consensus       149 ~~p~~~~~~--------~~~v~t~~~~~~-~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d~~~~  218 (492)
T 3ic9_A          149 NYPEFLAAA--------GSRLLTNDNLFE-LNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSG-SVANLQDEEMK  218 (492)
T ss_dssp             CCCHHHHTT--------GGGEECHHHHTT-CSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTT-CCTTCCCHHHH
T ss_pred             cCCCCCCcc--------CCcEEcHHHHhh-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECC-cccccCCHHHH
Confidence            877765422        123455555444 34458999999999999999999999999999999999 67776655555


Q ss_pred             HHHH
Q 022090          232 VVLF  235 (303)
Q Consensus       232 ~~~~  235 (303)
                      ..+.
T Consensus       219 ~~l~  222 (492)
T 3ic9_A          219 RYAE  222 (492)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.83  E-value=6.8e-21  Score=173.45  Aligned_cols=198  Identities=16%  Similarity=0.200  Sum_probs=126.4

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC-CCCceEEecCc----ccccCCCCCCCCCCCCCCCHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAK----QFCQLPHLPFPSSYPMFVSRAQ   82 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   82 (303)
                      +||+|||||++|+++|..|++.|.+|+|+|+++.+||.|.+. +.++..+....    .+.. ..+.++.. ....+...
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~-~~~g~~~~-~~~~~~~~   79 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKK-GLLGAKVK-GVELDLPA   79 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHH-CCTTEEEC-CEEECHHH
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhh-hcCCcccC-CCccCHHH
Confidence            699999999999999999999999999999998899987532 11111000000    0000 00000000 00112333


Q ss_pred             HHHH-----------HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCC
Q 022090           83 FIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP  151 (303)
Q Consensus        83 l~~~-----------l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p  151 (303)
                      +..+           +...++..+++.  +.++.+ .+  +  ...+.|.. ++       .+ +.||+||+|||  +.|
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~v~~--~~g~~~-~i--~--~~~~~v~~-~g-------~~-~~~d~lviAtG--~~p  141 (455)
T 2yqu_A           80 LMAHKDKVVQANTQGVEFLFKKNGIAR--HQGTAR-FL--S--ERKVLVEE-TG-------EE-LEARYILIATG--SAP  141 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCEE--EESCEE-ES--S--SSEEEETT-TC-------CE-EEEEEEEECCC--EEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEE--EEeEEE-Ee--c--CCeEEEee-CC-------EE-EEecEEEECCC--CCC
Confidence            3332           234445556554  555533 22  1  23444433 22       46 89999999999  778


Q ss_pred             CCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHH
Q 022090          152 FTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLG  231 (303)
Q Consensus       152 ~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~  231 (303)
                      ..|+++|.+.        ..++++.+... ....+++++|||+|.+|+|+|..|++.|.+||++++.+ +++|..+..+.
T Consensus       142 ~~~~~~g~~~--------~~v~~~~~~~~-~~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~-~~l~~~~~~~~  211 (455)
T 2yqu_A          142 LIPPWAQVDY--------ERVVTSTEALS-FPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMD-RILPTMDLEVS  211 (455)
T ss_dssp             CCCTTBCCCS--------SSEECHHHHTC-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSCHHHH
T ss_pred             CCCCCCCCCc--------CcEechHHhhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCC-ccccccCHHHH
Confidence            8888877543        13566655544 22357999999999999999999999999999999998 77776655554


Q ss_pred             HHHH
Q 022090          232 VVLF  235 (303)
Q Consensus       232 ~~~~  235 (303)
                      ..+.
T Consensus       212 ~~l~  215 (455)
T 2yqu_A          212 RAAE  215 (455)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.83  E-value=1.9e-21  Score=175.12  Aligned_cols=175  Identities=23%  Similarity=0.296  Sum_probs=119.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCC--eEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIP--YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~--v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (303)
                      .++||+|||||++|+++|..|+++|++  |+++|+++..+       |....  .+..+     .      .......++
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~-------y~~~~--l~~~~-----~------~~~~~~~~~   67 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIP-------YERPP--LSKEY-----L------AREKTFERI   67 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCC-------BCSGG--GGTTT-----T------TTSSCSGGG
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCC-------cCccc--CCHHH-----H------cCCCCHHHh
Confidence            457999999999999999999999987  99999988643       11100  00000     0      000011122


Q ss_pred             HHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022090           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (303)
Q Consensus        84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~  163 (303)
                      ..+...+.+..+++.  +.+++|+.++...    +.|.+.++       .. +.||+||+|||  +.|+.|++||.+.  
T Consensus        68 ~~~~~~~~~~~~i~~--~~~~~v~~id~~~----~~v~~~~g-------~~-~~~d~lvlAtG--~~~~~~~i~g~~~--  129 (415)
T 3lxd_A           68 CIRPAQFWEDKAVEM--KLGAEVVSLDPAA----HTVKLGDG-------SA-IEYGKLIWATG--GDPRRLSCVGADL--  129 (415)
T ss_dssp             BSSCHHHHHHTTEEE--EETCCEEEEETTT----TEEEETTS-------CE-EEEEEEEECCC--EECCCCBTTSSCC--
T ss_pred             ccCCHHHHHHCCcEE--EeCCEEEEEECCC----CEEEECCC-------CE-EEeeEEEEccC--CccCCCCCCCccc--
Confidence            222334445566554  8888999997654    56777654       56 89999999999  7888888888653  


Q ss_pred             cCCCCCccEEecccCCC-----CCCCC-CCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh
Q 022090          164 SSATGTGEVIHSTQYKN-----GKPYG-GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (303)
Q Consensus       164 ~~~~~~g~~~~~~~~~~-----~~~~~-~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~  225 (303)
                           .+ +++.....+     ..... +++++|||+|.+|+|+|..+.+.|.+||++++.+ .++++
T Consensus       130 -----~~-v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~-~~l~~  190 (415)
T 3lxd_A          130 -----AG-VHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALP-RVLAR  190 (415)
T ss_dssp             -----BT-EECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-STTTT
T ss_pred             -----cC-EEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-chhhh
Confidence                 12 222111111     01112 7899999999999999999999999999999998 56554

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.83  E-value=3.4e-20  Score=169.07  Aligned_cols=192  Identities=18%  Similarity=0.246  Sum_probs=121.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC-CCCceEEecCcc----cccCCCCCCCCCCCCCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAKQ----FCQLPHLPFPSSYPMFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~   81 (303)
                      ++||+|||||++|+++|..|++.|.+|+|||++ .+||.|.+. +.+...+.....    ......+.++.. ....+..
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~   81 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQAS-GGTLDWP   81 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC----CCHH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccC-CCCcCHH
Confidence            589999999999999999999999999999998 678877531 112110000000    000011111100 0123344


Q ss_pred             HHHHHHHHH-----------HHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           82 QFIEHLDHY-----------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        82 ~l~~~l~~~-----------~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      .+.++.+.+           .+..+++.  +.++ +..++  .    ++|.+ ++       .+ +.||+||+|||  +.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g~-~~~i~--~----~~v~~-~g-------~~-~~~d~lviAtG--s~  141 (463)
T 2r9z_A           82 RLVAGRDRYIGAINSFWDGYVERLGITR--VDGH-ARFVD--A----HTIEV-EG-------QR-LSADHIVIATG--GR  141 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESC-EEEEE--T----TEEEE-TT-------EE-EEEEEEEECCC--EE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEE--EEeE-EEEcc--C----CEEEE-CC-------EE-EEcCEEEECCC--CC
Confidence            444444332           23445443  4443 33332  2    34555 32       56 89999999999  78


Q ss_pred             CCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHH
Q 022090          151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL  230 (303)
Q Consensus       151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~  230 (303)
                      |..|++||.+..          +++.++.. ....+++++|||+|.+|+|+|..|++.|.+||+++|++ .+++..+..+
T Consensus       142 p~~p~i~G~~~~----------~~~~~~~~-~~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~-~~l~~~~~~~  209 (463)
T 2r9z_A          142 PIVPRLPGAELG----------ITSDGFFA-LQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALED-RLLFQFDPLL  209 (463)
T ss_dssp             ECCCSCTTGGGS----------BCHHHHHH-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCHHH
T ss_pred             CCCCCCCCccce----------ecHHHHhh-hhccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC-ccccccCHHH
Confidence            888889887432          33333322 12247899999999999999999999999999999998 6666554444


Q ss_pred             HH
Q 022090          231 GV  232 (303)
Q Consensus       231 ~~  232 (303)
                      ..
T Consensus       210 ~~  211 (463)
T 2r9z_A          210 SA  211 (463)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.83  E-value=7e-22  Score=177.59  Aligned_cols=172  Identities=19%  Similarity=0.250  Sum_probs=117.9

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCC--eEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIP--YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~--v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ++|+|||||++|+++|..|+++|++  |+++|+++..+       |....+  +..+..  ....+...  .        
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~-------y~~~~l--~~~~~~--g~~~~~~~--~--------   61 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLP-------YDRPSL--SKAVLD--GSLERPPI--L--------   61 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSS-------BCSGGG--GTHHHH--TSSSSCCB--S--------
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCC-------cCCccc--cHHHhC--CCCCHHHh--c--------
Confidence            4899999999999999999999987  99999988654       211000  000000  00000000  0        


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      +..++.++.+++.  +++++|+.++...    +.|.+.++       .+ +.||+||+|||  +.|+.|++||.+.    
T Consensus        62 ~~~~~~~~~~i~~--~~~~~v~~id~~~----~~v~~~~g-------~~-~~~d~lvlAtG--~~p~~~~ipG~~~----  121 (410)
T 3ef6_A           62 AEADWYGEARIDM--LTGPEVTALDVQT----RTISLDDG-------TT-LSADAIVIATG--SRARTMALPGSQL----  121 (410)
T ss_dssp             SCTTHHHHTTCEE--EESCCEEEEETTT----TEEEETTS-------CE-EECSEEEECCC--EEECCCCCTTTTS----
T ss_pred             CCHHHHHHCCCEE--EeCCEEEEEECCC----CEEEECCC-------CE-EECCEEEEccC--CcccCCCCCCccc----
Confidence            0112234456555  8898999997654    56777654       56 89999999999  7788899998652    


Q ss_pred             CCCCccEEecccCCC-----CCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh
Q 022090          166 ATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~  225 (303)
                         . .+++.....+     .....+++++|||+|.+|+|+|..+.+.|.+||++++.+ .++++
T Consensus       122 ---~-~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~-~~l~~  181 (410)
T 3ef6_A          122 ---P-GVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGD-ELLVR  181 (410)
T ss_dssp             ---T-TEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSHH
T ss_pred             ---c-ceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-ccchh
Confidence               2 2333222111     112347999999999999999999999999999999998 66654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.83  E-value=5.1e-20  Score=168.84  Aligned_cols=205  Identities=14%  Similarity=0.082  Sum_probs=127.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC-CCCceEEecCc----ccccCCCCCCCCCCCCCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAK----QFCQLPHLPFPSSYPMFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~   81 (303)
                      .+||+|||||++|+++|..|++.|.+|+|+|+++.+||.|... +.+...+....    .+..+..+..+.. ....+..
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~-~~~~~~~   84 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYP-EPELDID   84 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCC-CCCCCHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccC-CCccCHH
Confidence            5799999999999999999999999999999988888876431 11111000000    0000000000000 1112333


Q ss_pred             HHHHH-----------HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecC-------CCCceeEEEEeeCEEEE
Q 022090           82 QFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL-------SPGREIEEYYSGRFLVV  143 (303)
Q Consensus        82 ~l~~~-----------l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~-------~~~~~~~~~~~ad~vIl  143 (303)
                      .+..+           +...++..+++.  +.++.+.   .++  +.+.|...++.       ++  +..+ +.||+||+
T Consensus        85 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~--~~g~~~~---~~~--~~v~v~~~~g~~~~~~~~~g--~~~~-i~ad~lVi  154 (482)
T 1ojt_A           85 MLRAYKDGVVSRLTGGLAGMAKSRKVDV--IQGDGQF---LDP--HHLEVSLTAGDAYEQAAPTG--EKKI-VAFKNCII  154 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEE--EEEEEEE---EET--TEEEEEEEEEEETTEEEEEE--EEEE-EEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcEE--EeeEEEE---ccC--CEEEEEecCCcccccccccC--cceE-EEcCEEEE
Confidence            33332           334455566554  5555443   222  45666543320       00  2256 89999999


Q ss_pred             ccCCCCCCCCCC-CCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeee
Q 022090          144 ASGETTNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV  222 (303)
Q Consensus       144 AtG~~~~p~~p~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~  222 (303)
                      |||  +.|..|+ ++ .         ...++++.+... ....+++++|||+|.+|+|+|..|++.|.+||+++|++ ++
T Consensus       155 AtG--s~p~~~~~i~-~---------~~~v~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~  220 (482)
T 1ojt_A          155 AAG--SRVTKLPFIP-E---------DPRIIDSSGALA-LKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD-GL  220 (482)
T ss_dssp             CCC--EEECCCSSCC-C---------CTTEECHHHHTT-CCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS-SS
T ss_pred             CCC--CCCCCCCCCC-c---------cCcEEcHHHHhc-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECC-cc
Confidence            999  6676666 44 2         123456555544 22347999999999999999999999999999999999 78


Q ss_pred             eehhhHHHHHHHHh
Q 022090          223 LSREMVYLGVVLFK  236 (303)
Q Consensus       223 lp~~~~~~~~~~~~  236 (303)
                      +|..+.+++..+.+
T Consensus       221 l~~~~~~~~~~l~~  234 (482)
T 1ojt_A          221 MQGADRDLVKVWQK  234 (482)
T ss_dssp             STTSCHHHHHHHHH
T ss_pred             ccccCHHHHHHHHH
Confidence            88766555544433

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.83  E-value=1.9e-20  Score=172.36  Aligned_cols=206  Identities=17%  Similarity=0.164  Sum_probs=131.2

Q ss_pred             CcEEEECCcHHHHHHHHHHhhC---CCCeEEEecCCCCCCccCcC-CCCceEEecCc----ccccCCCCCCCC-CCCCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKY-SYDRLRLHLAK----QFCQLPHLPFPS-SYPMFV   78 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~   78 (303)
                      +||+|||||++|+++|..|++.   |.+|+|||+++ +||.|... +.++..+....    .+..+..+.++. ......
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   81 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI   81 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCcc
Confidence            7999999999999999999999   99999999998 88876532 11111000000    000111111110 000112


Q ss_pred             CHHHHHH-----------HHHHHHHHcCCCceeEeCeEEEEEEEeC--CCCeEEEEEeecCCCCceeEEEEeeCEEEEcc
Q 022090           79 SRAQFIE-----------HLDHYVSHFNIGPSIRYQRSVESASYDE--ATNMWNVKASNLLSPGREIEEYYSGRFLVVAS  145 (303)
Q Consensus        79 ~~~~l~~-----------~l~~~~~~~~l~~~i~~~~~V~~i~~~~--~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAt  145 (303)
                      +...+..           ++...+++.+++.  +.++ ++.++...  ..+.+.|...++     +... +.||+||+||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g~-~~~i~~~~~~~~~~~~V~~~~g-----~~~~-~~~d~lviAT  152 (499)
T 1xdi_A           82 SLPQIHARVKTLAAAQSADITAQLLSMGVQV--IAGR-GELIDSTPGLARHRIKATAADG-----STSE-HEADVVLVAT  152 (499)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESE-EEECCSSSCCSSEEEEEECTTS-----CEEE-EEESEEEECC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEeE-EEEecCcccCCCCEEEEEeCCC-----cEEE-EEeCEEEEcC
Confidence            3333333           3455566667654  6664 55554310  013355554432     1136 8999999999


Q ss_pred             CCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh
Q 022090          146 GETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (303)
Q Consensus       146 G~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~  225 (303)
                      |  +.|..|+++|.+..        .++++.+... ....+++++|||+|.+|+|+|..+.+.|.+||++++.+ +++|.
T Consensus       153 G--s~p~~p~i~g~~~~--------~v~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~  220 (499)
T 1xdi_A          153 G--ASPRILPSAQPDGE--------RILTWRQLYD-LDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQD-HVLPY  220 (499)
T ss_dssp             C--EEECCCGGGCCCSS--------SEEEGGGGGG-CSSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSS-SSSCC
T ss_pred             C--CCCCCCCCCCCCcC--------cEEehhHhhh-hhccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccc
Confidence            9  78888888886542        2556655544 23357999999999999999999999999999999998 78777


Q ss_pred             hhHHHHHHHH
Q 022090          226 EMVYLGVVLF  235 (303)
Q Consensus       226 ~~~~~~~~~~  235 (303)
                      .+.++...+.
T Consensus       221 ~d~~~~~~l~  230 (499)
T 1xdi_A          221 EDADAALVLE  230 (499)
T ss_dssp             SSHHHHHHHH
T ss_pred             cCHHHHHHHH
Confidence            6555554443

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.83  E-value=5.9e-21  Score=170.12  Aligned_cols=172  Identities=17%  Similarity=0.237  Sum_probs=121.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      ++||+|||||++|+++|..|++.|  .+|+++|++.  |..|....+.           .        .........++.
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g~~~~~~~l~-----------~--------~~~~~~~~~~~~   62 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--GRSYSKPMLS-----------T--------GFSKNKDADGLA   62 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--CCEECGGGGG-----------G--------TTTTTCCHHHHE
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--CCccCccccc-----------H--------HHhCCCCHHHhh
Confidence            579999999999999999999998  4689999876  2222211000           0        001112233443


Q ss_pred             H-HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022090           85 E-HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (303)
Q Consensus        85 ~-~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~  163 (303)
                      . ++..+++.++++.  +++++|+.++...    ++|.+.+        .+ +.||+||+|||  +.|..|++||.+.  
T Consensus        63 ~~~~~~~~~~~~v~~--~~~~~v~~i~~~~----~~v~~~~--------~~-~~~d~lviAtG--~~p~~p~i~g~~~--  123 (384)
T 2v3a_A           63 MAEPGAMAEQLNARI--LTHTRVTGIDPGH----QRIWIGE--------EE-VRYRDLVLAWG--AEPIRVPVEGDAQ--  123 (384)
T ss_dssp             EECHHHHHHHTTCEE--ECSCCCCEEEGGG----TEEEETT--------EE-EECSEEEECCC--EEECCCCCBSTTT--
T ss_pred             ccCHHHHHHhCCcEE--EeCCEEEEEECCC----CEEEECC--------cE-EECCEEEEeCC--CCcCCCCCCCcCc--
Confidence            2 4556667777664  7788888887544    4566643        46 89999999999  7888888888642  


Q ss_pred             cCCCCCccEEecccCCCC-----CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh
Q 022090          164 SSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (303)
Q Consensus       164 ~~~~~~g~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~  225 (303)
                            ..++++.++.+.     ....+++++|||+|.+|+|+|..|.+.|.+||++++.+ ++++.
T Consensus       124 ------~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~~~~  183 (384)
T 2v3a_A          124 ------DALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCE-QVMPG  183 (384)
T ss_dssp             ------TCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTT
T ss_pred             ------CCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-chhhc
Confidence                  224554443221     11237999999999999999999999999999999998 66665

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.83  E-value=1.1e-21  Score=177.56  Aligned_cols=192  Identities=17%  Similarity=0.172  Sum_probs=122.7

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ++|+|||||++|+++|..|+++|  .+|+|||+++..+..       ...  .+....   ..............     
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~-------~~~--l~~~~~---~~~~~~~~~~~~~~-----   63 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFA-------NCA--LPYVIG---EVVEDRRYALAYTP-----   63 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBC-------GGG--HHHHHT---TSSCCGGGTBCCCH-----
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCC-------cch--hHHHHc---CCccchhhhhhcCH-----
Confidence            37999999999999999999987  479999998764321       100  000000   00000000000111     


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                        ..+.++.+++.  +.+++|+.++...  ....+..  ...+  +..+ +.||+||+|||  +.|+.|+++|...+   
T Consensus        64 --~~~~~~~~i~~--~~~~~V~~id~~~--~~~~~~~--~~~~--~~~~-~~yd~lVIATG--s~p~~p~i~g~~~~---  127 (437)
T 4eqs_A           64 --EKFYDRKQITV--KTYHEVIAINDER--QTVSVLN--RKTN--EQFE-ESYDKLILSPG--ASANSLGFESDITF---  127 (437)
T ss_dssp             --HHHHHHHCCEE--EETEEEEEEETTT--TEEEEEE--TTTT--EEEE-EECSEEEECCC--EEECCCCCCCTTEE---
T ss_pred             --HHHHHhcCCEE--EeCCeEEEEEccC--cEEEEEe--ccCC--ceEE-EEcCEEEECCC--CccccccccCceEE---
Confidence              23345567665  8899999997655  3333333  2222  3357 89999999999  78888888885544   


Q ss_pred             CCCCccEEecccCCCC--CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHHh
Q 022090          166 ATGTGEVIHSTQYKNG--KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFK  236 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~~--~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~~  236 (303)
                         ....+........  ....+++++|||+|.+|+|+|..++++|.+||+++|++ .++|..+.+.+..+.+
T Consensus       128 ---~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~ll~~~d~~~~~~~~~  196 (437)
T 4eqs_A          128 ---TLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSD-KINKLMDADMNQPILD  196 (437)
T ss_dssp             ---CCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS-CCSTTSCGGGGHHHHH
T ss_pred             ---eeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeec-cccccccchhHHHHHH
Confidence               2111110000000  11247899999999999999999999999999999999 7888777666555544

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.83  E-value=5.3e-21  Score=173.58  Aligned_cols=168  Identities=17%  Similarity=0.219  Sum_probs=119.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..++|+|||||++|+++|..|++.|++|+|||+.+.+||.|.+.               ++.         +....++.+
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~g---------------ip~---------~~~~~~~~~  176 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYG---------------IPG---------FKLEKSVVE  176 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHT---------------SCT---------TTSCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeec---------------CCC---------ccCCHHHHH
Confidence            45799999999999999999999999999999999999987642               111         111245777


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      +..++++++++++  ++++.|.          ..+.+.+        .. +.||+||+|||.. .|+.+.+||.+.    
T Consensus       177 ~~~~~l~~~gv~~--~~~~~v~----------~~v~~~~--------~~-~~~d~vvlAtG~~-~~~~~~ipG~~~----  230 (456)
T 2vdc_G          177 RRVKLLADAGVIY--HPNFEVG----------RDASLPE--------LR-RKHVAVLVATGVY-KARDIKAPGSGL----  230 (456)
T ss_dssp             HHHHHHHHTTCEE--ETTCCBT----------TTBCHHH--------HH-SSCSEEEECCCCC-EECCTTCSCCTT----
T ss_pred             HHHHHHHHCCcEE--EeCCEec----------cEEEhhH--------hH-hhCCEEEEecCCC-CCCCCCCCCCcC----
Confidence            7778888888655  7776541          1122222        23 5799999999952 366778888652    


Q ss_pred             CCCCccEEecccC---------CC--------CCCCCCCeEEEECCCccHHHHHHHHhhccCc-eEEEeecCeeeeehhh
Q 022090          166 ATGTGEVIHSTQY---------KN--------GKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSPVHVLSREM  227 (303)
Q Consensus       166 ~~~~g~~~~~~~~---------~~--------~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-vt~~~r~~~~~lp~~~  227 (303)
                         .| +++..++         ..        .....+++|+|||+|++|+|+|..+.+.|.+ ||+++|++...+|...
T Consensus       231 ---~g-v~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~  306 (456)
T 2vdc_G          231 ---GN-IVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQ  306 (456)
T ss_dssp             ---TT-EEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCH
T ss_pred             ---CC-cEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCH
Confidence               33 2332111         11        1225689999999999999999999999874 9999999844466543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.82  E-value=4e-21  Score=175.43  Aligned_cols=201  Identities=16%  Similarity=0.163  Sum_probs=128.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC-CCCceEEecC----cccc-cCCCCCCCCCCCCCCCH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLA----KQFC-QLPHLPFPSSYPMFVSR   80 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~   80 (303)
                      ++||+|||||++|+++|..|++.|++|+|+|++ .+||.|... +.+...+...    ..+. .+..+..+ . ....+.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~-~-~~~~~~   79 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-G-EVTFDY   79 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEE-E-CCEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCC-C-CCccCH
Confidence            379999999999999999999999999999998 678776421 1111100000    0000 01111111 0 001122


Q ss_pred             HH-----------HHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           81 AQ-----------FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        81 ~~-----------l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      ..           +...+.+.+++.+++.  +.++.+. +  +  .+.+.|...++     +..+ +.||+||+|||  +
T Consensus        80 ~~~~~~~~~~~~~l~~~l~~~~~~~gv~~--~~g~~~~-i--d--~~~v~V~~~~G-----~~~~-~~~d~lViAtG--~  144 (464)
T 2a8x_A           80 GIAYDRSRKVAEGRVAGVHFLMKKNKITE--IHGYGTF-A--D--ANTLLVDLNDG-----GTES-VTFDNAIIATG--S  144 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEE--ECEEEEE-S--S--SSEEEEEETTS-----CCEE-EEEEEEEECCC--E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEeEEEE-e--c--CCeEEEEeCCC-----ceEE-EEcCEEEECCC--C
Confidence            22           2333445556666554  6555432 2  2  34567766443     1146 89999999999  6


Q ss_pred             CCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHH
Q 022090          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (303)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~  229 (303)
                      .|..|+++|.+.         .++++.+... ....+++++|||+|.+|+|+|..|.+.|.+||+++|.+ +++|..+.+
T Consensus       145 ~~~~~~~~g~~~---------~~~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~  213 (464)
T 2a8x_A          145 STRLVPGTSLSA---------NVVTYEEQIL-SRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLP-RALPNEDAD  213 (464)
T ss_dssp             EECCCTTCCCBT---------TEECHHHHHT-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCHH
T ss_pred             CCCCCCCCCCCc---------eEEecHHHhh-ccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCHH
Confidence            777888877542         2455554433 22357999999999999999999999999999999998 788866555


Q ss_pred             HHHHHHh
Q 022090          230 LGVVLFK  236 (303)
Q Consensus       230 ~~~~~~~  236 (303)
                      ++..+.+
T Consensus       214 ~~~~l~~  220 (464)
T 2a8x_A          214 VSKEIEK  220 (464)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5544433

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.82  E-value=2.8e-21  Score=175.80  Aligned_cols=187  Identities=17%  Similarity=0.179  Sum_probs=121.8

Q ss_pred             CcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      +||+|||||++|+++|..|++.  |.+|+|+|+++..+....       .+  +.....  ...       ..+..++..
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-------~~--~~~~~g--~~~-------~~~~~~~~~   62 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSC-------GI--ALYLGK--EIK-------NNDPRGLFY   62 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGG-------GH--HHHHTT--CBG-------GGCGGGGBS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccc-------cc--hhhhcC--Ccc-------cCCHHHhhh
Confidence            4899999999999999999998  999999999886542110       00  000000  000       000111111


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      ++...+++++++.  +++++|+.++.++  ..+.+.....+    +..+ +.||+||+|||  +.|..|++||.+.    
T Consensus        63 ~~~~~~~~~gv~~--~~~~~v~~i~~~~--~~v~v~~~~~g----~~~~-~~~d~lviAtG--s~p~~p~i~g~~~----  127 (452)
T 2cdu_A           63 SSPEELSNLGANV--QMRHQVTNVDPET--KTIKVKDLITN----EEKT-EAYDKLIMTTG--SKPTVPPIPGIDS----  127 (452)
T ss_dssp             CCHHHHHHTTCEE--EESEEEEEEEGGG--TEEEEEETTTC----CEEE-EECSEEEECCC--EEECCCCCTTTTS----
T ss_pred             cCHHHHHHcCCEE--EeCCEEEEEEcCC--CEEEEEecCCC----ceEE-EECCEEEEccC--CCcCCCCCCCCCC----
Confidence            2233445567654  7889999987655  34444331111    1257 89999999999  7888889998753    


Q ss_pred             CCCCccEEecccCCCC-----CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeee-hhhHHHHH
Q 022090          166 ATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS-REMVYLGV  232 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp-~~~~~~~~  232 (303)
                         . .++++..+.+.     ....+++++|||+|.+|+|+|..+.+.|.+||++++.+ +++| ..+.++..
T Consensus       128 ---~-~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~  195 (452)
T 2cdu_A          128 ---S-RVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHE-RVLYKYFDKEFTD  195 (452)
T ss_dssp             ---T-TEEECSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS-STTTTTSCHHHHH
T ss_pred             ---C-CEEEeCcHHHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCC-chhhhhhhhhHHH
Confidence               2 24444332211     12257899999999999999999999999999999998 6766 33334433

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.82  E-value=2.8e-20  Score=169.12  Aligned_cols=194  Identities=19%  Similarity=0.186  Sum_probs=121.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecCccc----c-cCCCCCCCCCCCCCCCH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQF----C-QLPHLPFPSSYPMFVSR   80 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~   80 (303)
                      ++||+|||||++|+++|..|++.|.+|+|||++ .+||.|.+ .+.|...+......    . ....+.++.. ....+.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~-~~~~~~   81 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTT-INKFNW   81 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEE-EEEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCC-CCccCH
Confidence            579999999999999999999999999999998 67887753 11111100000000    0 0000000000 001223


Q ss_pred             HHHHHHHHH-----------HHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           81 AQFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        81 ~~l~~~l~~-----------~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      ..+.++...           ..+..+++.  +.++ ++.++  .    +.|.+ ++       .+ +.||+||+|||  +
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g~-~~~i~--~----~~v~~-~g-------~~-~~~d~lviAtG--s  141 (450)
T 1ges_A           82 ETLIASRTAYIDRIHTSYENVLGKNNVDV--IKGF-ARFVD--A----KTLEV-NG-------ET-ITADHILIATG--G  141 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESC-CEEEE--T----TEEEE-TT-------EE-EEEEEEEECCC--E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEeE-EEEec--C----CEEEE-CC-------EE-EEeCEEEECCC--C
Confidence            344433332           234445543  4443 33332  2    34555 32       56 89999999999  7


Q ss_pred             CCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHH
Q 022090          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY  229 (303)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~  229 (303)
                      .|..|++||.+..          +++.++.. ....+++++|||+|.+|+|+|..|++.|.+||++++.+ .++|..+..
T Consensus       142 ~p~~p~i~g~~~~----------~~~~~~~~-~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~  209 (450)
T 1ges_A          142 RPSHPDIPGVEYG----------IDSDGFFA-LPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD-APLPSFDPM  209 (450)
T ss_dssp             EECCCCSTTGGGS----------BCHHHHHH-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCHH
T ss_pred             CCCCCCCCCccce----------ecHHHhhh-hhhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCC-chhhhhhHH
Confidence            8888889987532          33333322 12247899999999999999999999999999999998 677665544


Q ss_pred             HHHHH
Q 022090          230 LGVVL  234 (303)
Q Consensus       230 ~~~~~  234 (303)
                      +...+
T Consensus       210 ~~~~l  214 (450)
T 1ges_A          210 ISETL  214 (450)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.82  E-value=1.7e-21  Score=179.75  Aligned_cols=208  Identities=15%  Similarity=0.161  Sum_probs=126.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC--------CCCCcc-CcCCCCceEEecCccccc-----CCCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--------CYASIW-KKYSYDRLRLHLAKQFCQ-----LPHLPFPS   72 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~--------~~gg~w-~~~~~~~~~~~~~~~~~~-----~~~~~~~~   72 (303)
                      .|||+|||+|++|+.+|.+++++|.+|+|+|+..        .+||++ +..|.|+..+........     ...+.+..
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~  121 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF  121 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCccc
Confidence            3899999999999999999999999999999743        367643 334444322211111000     00000000


Q ss_pred             CCCCCCCHHHHHHHHHHHHH-----------HcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEE
Q 022090           73 SYPMFVSRAQFIEHLDHYVS-----------HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL  141 (303)
Q Consensus        73 ~~~~~~~~~~l~~~l~~~~~-----------~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v  141 (303)
                      . ....++..+.++.+..++           ..+++   .+.....-++  .  ....|...+...   ..++ ++++++
T Consensus       122 ~-~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~---~i~G~a~f~~--~--~~v~V~~~~~~~---~~~~-i~a~~i  189 (542)
T 4b1b_A          122 D-NLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVK---YINGLAKLKD--K--NTVSYYLKGDLS---KEET-VTGKYI  189 (542)
T ss_dssp             E-EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EECEEEEEEE--T--TEEEEEEC--CC---CEEE-EEEEEE
T ss_pred             C-cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEeeeEEEcC--C--CcceEeecccCC---ceEE-EeeeeE
Confidence            0 011234455555544433           22333   1222222221  1  223343332211   2267 899999


Q ss_pred             EEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCee
Q 022090          142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH  221 (303)
Q Consensus       142 IlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~  221 (303)
                      |+|||  ++|.+|+.++...        ..++++.+..+ ....|++++|||+|++|+|+|..++++|.+||+++|+  .
T Consensus       190 iIATG--s~P~~P~~~~~~~--------~~~~ts~~~l~-l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~--~  256 (542)
T 4b1b_A          190 LIATG--CRPHIPDDVEGAK--------ELSITSDDIFS-LKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS--I  256 (542)
T ss_dssp             EECCC--EEECCCSSSBTHH--------HHCBCHHHHTT-CSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESS--C
T ss_pred             EeccC--CCCCCCCcccCCC--------ccccCchhhhc-cccCCceEEEECCCHHHHHHHHHHHhcCCeEEEeccc--c
Confidence            99999  8898886543321        12345555544 4456899999999999999999999999999999874  5


Q ss_pred             eeehhhHHHHHHHHhhCC
Q 022090          222 VLSREMVYLGVVLFKYVP  239 (303)
Q Consensus       222 ~lp~~~~~~~~~~~~~l~  239 (303)
                      +||.++.+++..+.+.|.
T Consensus       257 ~L~~~D~ei~~~l~~~l~  274 (542)
T 4b1b_A          257 VLRGFDQQCAVKVKLYME  274 (542)
T ss_dssp             SSTTSCHHHHHHHHHHHH
T ss_pred             cccccchhHHHHHHHHHH
Confidence            788888877766655443

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.82  E-value=6.8e-21  Score=173.07  Aligned_cols=177  Identities=17%  Similarity=0.155  Sum_probs=117.9

Q ss_pred             CcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      +||+|||||++|+++|..|++.  |.+|+|||+++..|..       ...  .+....  ..         +.+.+++..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~-------~~~--~~~~~~--~~---------~~~~~~~~~   60 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL-------SAG--MQLYLE--GK---------VKDVNSVRY   60 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC-------GGG--HHHHHT--TS---------SCCGGGSBS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcc-------ccc--chhhhc--Cc---------cCCHHHhhc
Confidence            4899999999999999999998  8999999998865411       000  000000  00         001111112


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      ++.+.+++++++.  ++++.|+.++.++  ..  |.+.+..++  +..+ +.||+||+|||  +.|..|++||.+.    
T Consensus        61 ~~~~~~~~~gv~~--~~~~~v~~i~~~~--~~--v~~~~~~~g--~~~~-~~~d~lviAtG--~~p~~p~i~G~~~----  125 (447)
T 1nhp_A           61 MTGEKMESRGVNV--FSNTEITAIQPKE--HQ--VTVKDLVSG--EERV-ENYDKLIISPG--AVPFELDIPGKDL----  125 (447)
T ss_dssp             CCHHHHHHTTCEE--EETEEEEEEETTT--TE--EEEEETTTC--CEEE-EECSEEEECCC--EEECCCCSTTTTS----
T ss_pred             CCHHHHHHCCCEE--EECCEEEEEeCCC--CE--EEEEecCCC--ceEE-EeCCEEEEcCC--CCcCCCCCCCCCC----
Confidence            2233445567654  7899999887654  33  444331111  2246 79999999999  7788899998752    


Q ss_pred             CCCCccEEecccCCCC-------CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeee
Q 022090          166 ATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp  224 (303)
                         .+ ++++..+.+.       ....+++++|||+|.+|+|+|..+++.|.+|+++++.+ .+++
T Consensus       126 ---~~-v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~  186 (447)
T 1nhp_A          126 ---DN-IYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD-RPLG  186 (447)
T ss_dssp             ---BS-EECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-STTT
T ss_pred             ---CC-eEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCc-cccc
Confidence               22 4544332211       11157999999999999999999999999999999998 5655

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.82  E-value=4.1e-20  Score=169.35  Aligned_cols=208  Identities=13%  Similarity=0.118  Sum_probs=126.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC-CCCceEEecCc----ccc-cCCCCCCCCCCCCCCCH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAK----QFC-QLPHLPFPSSYPMFVSR   80 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~   80 (303)
                      .+||+|||||++|+++|..|++.|++|+|+|+++.+||.|... +.++..+....    .+. .+.....+.......+.
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~   84 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINV   84 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence            4799999999999999999999999999999988899987532 11110000000    000 00000000000001123


Q ss_pred             HHHHHH-----------HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCC-ceeEEEEeeCEEEEccCCC
Q 022090           81 AQFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPG-REIEEYYSGRFLVVASGET  148 (303)
Q Consensus        81 ~~l~~~-----------l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ad~vIlAtG~~  148 (303)
                      .++..+           +...+++.+++.  ++++.+..     +...+.|.+.++.... ..... +.||+||+|||  
T Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~--~~g~~~~~-----~~~~v~V~~~~G~~~~~~~~~~-i~~d~lViAtG--  154 (478)
T 1v59_A           85 ANFQKAKDDAVKQLTGGIELLFKKNKVTY--YKGNGSFE-----DETKIRVTPVDGLEGTVKEDHI-LDVKNIIVATG--  154 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESEEEES-----SSSEEEEECCTTCTTCCSSCEE-EEEEEEEECCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEEEEEc-----cCCeEEEEecCCCcccccccce-EEeCEEEECcC--
Confidence            333332           334455556554  67765531     2345667654431000 00024 68999999999  


Q ss_pred             CCCCCCCCCCccccccCCCCCc-cEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhh
Q 022090          149 TNPFTPDIRGLCSFCSSATGTG-EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (303)
Q Consensus       149 ~~p~~p~~~g~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~  227 (303)
                      +.|.  .+||.+ +      .+ .++++.+..... ..+++++|||+|.+|+|+|..|++.|.+||+++|++ .++|..+
T Consensus       155 s~p~--~~~g~~-~------~~~~v~~~~~~~~~~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~  223 (478)
T 1v59_A          155 SEVT--PFPGIE-I------DEEKIVSSTGALSLK-EIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP-QIGASMD  223 (478)
T ss_dssp             EEEC--CCTTCC-C------CSSSEECHHHHTTCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSSSSC
T ss_pred             CCCC--CCCCCC-C------CCceEEcHHHHHhhh-ccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCC-ccccccC
Confidence            5552  455654 2      33 356665554422 247999999999999999999999999999999998 7777655


Q ss_pred             HHHHHHHH
Q 022090          228 VYLGVVLF  235 (303)
Q Consensus       228 ~~~~~~~~  235 (303)
                      .++...+.
T Consensus       224 ~~~~~~l~  231 (478)
T 1v59_A          224 GEVAKATQ  231 (478)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55544443

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.82  E-value=2e-20  Score=170.75  Aligned_cols=195  Identities=17%  Similarity=0.153  Sum_probs=122.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEec----CcccccCCCCCCCCCCCCCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHL----AKQFCQLPHLPFPSSYPMFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~   81 (303)
                      .+||+|||||++|+++|..|+++|++|+|||+ ..+||.|.+ .+.+...+..    ......++.+.++... ...+..
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~-~~~~~~   82 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGE-SRFDWA   82 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECC-CEECHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCC-CCcCHH
Confidence            58999999999999999999999999999999 668887643 2111110000    0000001111110000 011222


Q ss_pred             HHH-----------HHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEe-ecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           82 QFI-----------EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        82 ~l~-----------~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      .+.           .++....+..+++.  ..+ ++..+      +.+.+.+. ++       .. +.||+||+|||  +
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g-~~~~i------~~~~v~~~~~~-------~~-~~~d~lviAtG--~  143 (463)
T 4dna_A           83 KLVAAKEQEIARLEGLYRKGLANAGAEI--LDT-RAELA------GPNTVKLLASG-------KT-VTAERIVIAVG--G  143 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEE--EES-CEEES------SSSEEEETTTT-------EE-EEEEEEEECCC--E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEe------eCCEEEEecCC-------eE-EEeCEEEEecC--C
Confidence            222           23333444455543  333 33332      12345552 22       57 89999999999  7


Q ss_pred             CCC-CCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH
Q 022090          150 NPF-TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       150 ~p~-~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~  228 (303)
                      .|. .|++||.+..          +++.++.. ....+++++|||+|.+|+|+|..+.+.|.+|+++++.+ .++|..+.
T Consensus       144 ~p~~~p~i~G~~~~----------~~~~~~~~-~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~-~~l~~~~~  211 (463)
T 4dna_A          144 HPSPHDALPGHELC----------ITSNEAFD-LPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGK-EILSRFDQ  211 (463)
T ss_dssp             EECCCTTSTTGGGC----------BCHHHHTT-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCH
T ss_pred             CcccCCCCCCcccc----------ccHHHHhh-hhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCH
Confidence            888 8899987643          33333333 23357999999999999999999999999999999998 66676555


Q ss_pred             HHHHHH
Q 022090          229 YLGVVL  234 (303)
Q Consensus       229 ~~~~~~  234 (303)
                      ++...+
T Consensus       212 ~~~~~l  217 (463)
T 4dna_A          212 DMRRGL  217 (463)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544433

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.81  E-value=6.7e-21  Score=174.49  Aligned_cols=203  Identities=14%  Similarity=0.113  Sum_probs=123.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC------CCCccCc-CCCCceEEecCc-ccc----cCCCCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC------YASIWKK-YSYDRLRLHLAK-QFC----QLPHLPFPSS   73 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~------~gg~w~~-~~~~~~~~~~~~-~~~----~~~~~~~~~~   73 (303)
                      .++||+|||||++|+++|..|++.|++|+|||+++.      +||+|.+ .+.+...+.... .+.    .+..+.++..
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~   81 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG   81 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            358999999999999999999999999999999874      4554432 111111000000 000    0011110000


Q ss_pred             CCCCCCHHHHHHHHH-----------HHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEE
Q 022090           74 YPMFVSRAQFIEHLD-----------HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV  142 (303)
Q Consensus        74 ~~~~~~~~~l~~~l~-----------~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI  142 (303)
                       ....+...+..+..           ...+..+++.  ..+. +..+  +  ...+.|...++     +... +.||+||
T Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g~-~~~~--~--~~~~~v~~~~g-----~~~~-~~~d~lv  147 (476)
T 3lad_A           82 -EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTL--FEGH-GKLL--A--GKKVEVTAADG-----SSQV-LDTENVI  147 (476)
T ss_dssp             -CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEE--EESE-EEEC--S--TTCEEEECTTS-----CEEE-ECCSCEE
T ss_pred             -CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEeE-EEEe--c--CCEEEEEcCCC-----ceEE-EEcCEEE
Confidence             11123333333332           2333445543  4333 2222  2  24566655433     2257 8999999


Q ss_pred             EccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeee
Q 022090          143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV  222 (303)
Q Consensus       143 lAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~  222 (303)
                      +|||  +.|..|+.++.+        ...++++.+... ....+++++|||+|.+|+|+|..|.+.|.+||+++|.+ ++
T Consensus       148 lAtG--~~p~~~~~~~~~--------~~~v~~~~~~~~-~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~  215 (476)
T 3lad_A          148 LASG--SKPVEIPPAPVD--------QDVIVDSTGALD-FQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD-KF  215 (476)
T ss_dssp             ECCC--EEECCCTTSCCC--------SSSEEEHHHHTS-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SS
T ss_pred             EcCC--CCCCCCCCCCCC--------cccEEechhhhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-Cc
Confidence            9999  677666554432        223566655544 33467999999999999999999999999999999998 77


Q ss_pred             eehhhHHHHHHH
Q 022090          223 LSREMVYLGVVL  234 (303)
Q Consensus       223 lp~~~~~~~~~~  234 (303)
                      +|..+.++...+
T Consensus       216 l~~~~~~~~~~l  227 (476)
T 3lad_A          216 LPAVDEQVAKEA  227 (476)
T ss_dssp             STTSCHHHHHHH
T ss_pred             CcccCHHHHHHH
Confidence            776655554443

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.81  E-value=6.4e-20  Score=172.46  Aligned_cols=199  Identities=18%  Similarity=0.226  Sum_probs=123.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC-C-------CCCCccCc-CCCCceEEecCc-------ccccCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE-N-------CYASIWKK-YSYDRLRLHLAK-------QFCQLPHLP   69 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~-~-------~~gg~w~~-~~~~~~~~~~~~-------~~~~~~~~~   69 (303)
                      ..+||+|||||++|+++|..|++.|.+|+|||+. +       .+||+|.+ .++|...+....       ....+. ..
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g-~~  184 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFG-WS  184 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-CC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCC-cc
Confidence            4589999999999999999999999999999973 2       36665532 222221111000       000010 00


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHc-----------CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEee
Q 022090           70 FPSSYPMFVSRAQFIEHLDHYVSHF-----------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG  138 (303)
Q Consensus        70 ~~~~~~~~~~~~~l~~~l~~~~~~~-----------~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a  138 (303)
                      .+.. ....+..++.+++..+++.+           ++.   ........++  .    +.+.....++   +..+ +.|
T Consensus       185 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~---~~~~~~~~~~--~----~~v~v~~~~g---~~~~-~~~  250 (598)
T 2x8g_A          185 LDRS-KISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVT---YLNAKGRLIS--P----HEVQITDKNQ---KVST-ITG  250 (598)
T ss_dssp             CCGG-GCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EECSEEEEEE--T----TEEEEECTTC---CEEE-EEE
T ss_pred             ccCC-cCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEcC--C----CEEEEEeCCC---CeEE-EEe
Confidence            1100 01245667777776655432           222   1222232332  2    3344432111   2246 899


Q ss_pred             CEEEEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeec
Q 022090          139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (303)
Q Consensus       139 d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~  218 (303)
                      |+||+|||  +.|+.|++||.+.+         .+++.++.. ....+++++|||+|++|+|+|..|++.|.+||+++|+
T Consensus       251 d~lviAtG--s~p~~p~i~G~~~~---------~~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          251 NKIILATG--ERPKYPEIPGAVEY---------GITSDDLFS-LPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             EEEEECCC--EEECCCSSTTHHHH---------CEEHHHHTT-CSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEeCC--CCCCCCCCCCcccc---------eEcHHHHhh-CccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            99999999  78889999997644         244444433 2345789999999999999999999999999999987


Q ss_pred             CeeeeehhhHHHHHH
Q 022090          219 PVHVLSREMVYLGVV  233 (303)
Q Consensus       219 ~~~~lp~~~~~~~~~  233 (303)
                        .++|..+..++..
T Consensus       319 --~~l~~~d~~~~~~  331 (598)
T 2x8g_A          319 --ILLRGFDQQMAEK  331 (598)
T ss_dssp             --CSSTTSCHHHHHH
T ss_pred             --cCcCcCCHHHHHH
Confidence              4666655444433

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.81  E-value=4.5e-20  Score=169.38  Aligned_cols=202  Identities=14%  Similarity=0.125  Sum_probs=124.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhh-CCCCeEEEe--------cCCCCCCccCc-CCCCceEEecCccc----ccCCCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSL-QSIPYVILE--------RENCYASIWKK-YSYDRLRLHLAKQF----CQLPHLPFPS   72 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~-~g~~v~iie--------~~~~~gg~w~~-~~~~~~~~~~~~~~----~~~~~~~~~~   72 (303)
                      ++||+|||||++|+++|..|++ .|.+|+|||        +...+||+|.+ .+.|+..+.....+    .....+.+..
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~   82 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWEL   82 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEC
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCccc
Confidence            5799999999999999999999 999999999        35678887643 22222111000000    0000011100


Q ss_pred             CCC-CCCCHHHHHHHHHH-----------HHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEE---eecCCCCce-eEEE
Q 022090           73 SYP-MFVSRAQFIEHLDH-----------YVSHF-NIGPSIRYQRSVESASYDEATNMWNVKA---SNLLSPGRE-IEEY  135 (303)
Q Consensus        73 ~~~-~~~~~~~l~~~l~~-----------~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~---~~~~~~~~~-~~~~  135 (303)
                      ..+ ...+...+.++..+           ..+.. +++.  +.++ ++.++  .  ..+.+..   .++     + ... 
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~--~~g~-~~~i~--~--~~v~v~~~~~~~g-----~~~~~-  149 (490)
T 1fec_A           83 DRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTF--HQGF-GALQD--N--HTVLVRESADPNS-----AVLET-  149 (490)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEE--EESE-EEEEE--T--TEEEEESSSSTTS-----CEEEE-
T ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEE--EEeE-EEEee--C--CEEEEEeeccCCC-----CceEE-
Confidence            000 01233444443333           23334 4433  5554 55543  2  2233321   121     1 146 


Q ss_pred             EeeCEEEEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhc---cCce
Q 022090          136 YSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH---AAKT  212 (303)
Q Consensus       136 ~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~---g~~v  212 (303)
                      +.||+||+|||  +.|..|++||.+..          +++.++.. ....+++++|||+|.+|+|+|..|.+.   |.+|
T Consensus       150 ~~~d~lviAtG--s~p~~p~i~g~~~~----------~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~V  216 (490)
T 1fec_A          150 LDTEYILLATG--SWPQHLGIEGDDLC----------ITSNEAFY-LDEAPKRALCVGGGYISIEFAGIFNAYKARGGQV  216 (490)
T ss_dssp             EEEEEEEECCC--EEECCCCSBTGGGC----------BCHHHHTT-CSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEE
T ss_pred             EEcCEEEEeCC--CCCCCCCCCCccce----------ecHHHHhh-hhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeE
Confidence            89999999999  78888888887432          33333333 223478999999999999999999999   9999


Q ss_pred             EEEeecCeeeeehhhHHHHHHHH
Q 022090          213 SLVVRSPVHVLSREMVYLGVVLF  235 (303)
Q Consensus       213 t~~~r~~~~~lp~~~~~~~~~~~  235 (303)
                      |+++|.+ +++|..+.++...+.
T Consensus       217 tlv~~~~-~~l~~~d~~~~~~l~  238 (490)
T 1fec_A          217 DLAYRGD-MILRGFDSELRKQLT  238 (490)
T ss_dssp             EEEESSS-SSSTTSCHHHHHHHH
T ss_pred             EEEEcCC-CcccccCHHHHHHHH
Confidence            9999998 777765555544433

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.81  E-value=9.7e-21  Score=173.50  Aligned_cols=183  Identities=17%  Similarity=0.298  Sum_probs=120.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      ++||+|||||++|+++|..|++.  |.+|+|||+++..+....     .+    +...   ..        ...+..++.
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-----~~----~~~~---~~--------~~~~~~~l~   95 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQC-----GL----PYVI---SG--------AIASTEKLI   95 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGG-----GH----HHHH---TT--------SSSCGGGGB
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCC-----Cc----chhh---cC--------CcCCHHHhh
Confidence            46999999999999999999997  899999999886542110     00    0000   00        001111221


Q ss_pred             HH-HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEE-eecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccc
Q 022090           85 EH-LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA-SNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSF  162 (303)
Q Consensus        85 ~~-l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~-~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~  162 (303)
                      .+ ...+.+.++++.  +++++|+.++.++  +.+.+.. .++     +..+ +.||+||+|||  +.|..|++||.+. 
T Consensus        96 ~~~~~~~~~~~gv~~--~~~~~v~~i~~~~--~~v~v~~~~~g-----~~~~-~~~d~lviAtG--~~p~~p~i~G~~~-  162 (480)
T 3cgb_A           96 ARNVKTFRDKYGIDA--KVRHEVTKVDTEK--KIVYAEHTKTK-----DVFE-FSYDRLLIATG--VRPVMPEWEGRDL-  162 (480)
T ss_dssp             SSCHHHHHHTTCCEE--ESSEEEEEEETTT--TEEEEEETTTC-----CEEE-EECSEEEECCC--EEECCCCCBTTTS-
T ss_pred             hcCHHHHHhhcCCEE--EeCCEEEEEECCC--CEEEEEEcCCC-----ceEE-EEcCEEEECCC--CcccCCCCCCccC-
Confidence            11 223334557654  8889999987654  4444443 112     2237 89999999999  7888888988753 


Q ss_pred             ccCCCCCccEEecccCCCCC-------CCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHH
Q 022090          163 CSSATGTGEVIHSTQYKNGK-------PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL  230 (303)
Q Consensus       163 ~~~~~~~g~~~~~~~~~~~~-------~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~  230 (303)
                            .+ +++.....+..       ...+++++|||+|.+|+|+|..|.+.|.+|++++|.+ .++|..+.++
T Consensus       163 ------~~-v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~  229 (480)
T 3cgb_A          163 ------QG-VHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERND-HIGTIYDGDM  229 (480)
T ss_dssp             ------BT-EECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGG-GTTSSSCHHH
T ss_pred             ------CC-EEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC-chhhcCCHHH
Confidence                  22 34432221110       1157999999999999999999999999999999998 5666443333

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.81  E-value=1.1e-20  Score=169.45  Aligned_cols=172  Identities=19%  Similarity=0.266  Sum_probs=115.5

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ++|+|||||++|+++|..|++.|+  +|+|||+++..+       |....  .+..+....  ..+.         ++..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~-------y~~~~--l~~~~l~~~--~~~~---------~~~~   61 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLP-------YQRPP--LSKAYLKSG--GDPN---------SLMF   61 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSS-------BCSGG--GGTGGGGSC--CCTT---------SSBS
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------CCCcc--CCHHHHCCC--CCHH---------HccC
Confidence            689999999999999999999998  899999988643       21110  000010000  0000         1111


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS  165 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~  165 (303)
                      +...+....+++.  +. ++|+.++...    ..|.+.++       .. +.||+||+|||  +.|..|++||.+.    
T Consensus        62 ~~~~~~~~~~i~~--~~-~~v~~id~~~----~~v~~~~g-------~~-~~~d~lvlAtG--~~p~~~~i~g~~~----  120 (404)
T 3fg2_P           62 RPEKFFQDQAIEL--IS-DRMVSIDREG----RKLLLASG-------TA-IEYGHLVLATG--ARNRMLDVPNASL----  120 (404)
T ss_dssp             SCHHHHHHTTEEE--EC-CCEEEEETTT----TEEEESSS-------CE-EECSEEEECCC--EEECCCCSTTTTS----
T ss_pred             CCHHHHHhCCCEE--EE-EEEEEEECCC----CEEEECCC-------CE-EECCEEEEeeC--CCccCCCCCCCCC----
Confidence            1223344456554  66 8888887654    45666654       56 89999999999  7888888988653    


Q ss_pred             CCCCccEEecccCCC-----CCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh
Q 022090          166 ATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (303)
Q Consensus       166 ~~~~g~~~~~~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~  225 (303)
                         .+ +++.....+     .....+++++|||+|.+|+|+|..+.+.|.+||++++.+ .++++
T Consensus       121 ---~~-v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~-~~~~~  180 (404)
T 3fg2_P          121 ---PD-VLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAP-RVMAR  180 (404)
T ss_dssp             ---TT-EECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-STTTT
T ss_pred             ---Cc-EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCC-cchhh
Confidence               22 222111111     112247899999999999999999999999999999998 55554

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.80  E-value=2.1e-20  Score=168.94  Aligned_cols=175  Identities=17%  Similarity=0.172  Sum_probs=117.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      .+||+|||||++|+++|..|++.|.  +|+++|+++..+       |...  ..+..+..  ..         .....+.
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~-------~~~~--~l~~~~~~--~~---------~~~~~~~   63 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIP-------HHLP--PLSKAYLA--GK---------ATAESLY   63 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCC-------BCSG--GGGTTTTT--TC---------SCSGGGB
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCC-------CcCC--CCcHHHhC--CC---------CChHHhc
Confidence            4799999999999999999999998  799999987543       1110  00000000  00         0001111


Q ss_pred             HHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (303)
Q Consensus        85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~  164 (303)
                      ....+++++.+++.  ++++.|+.++...    +.|.+.++       .+ +.||+||+|||  +.|..|++||.+.   
T Consensus        64 ~~~~~~~~~~gv~~--~~~~~v~~i~~~~----~~v~~~~g-------~~-~~~d~lviAtG--~~p~~~~i~G~~~---  124 (431)
T 1q1r_A           64 LRTPDAYAAQNIQL--LGGTQVTAINRDR----QQVILSDG-------RA-LDYDRLVLATG--GRPRPLPVASGAV---  124 (431)
T ss_dssp             SSCHHHHHHTTEEE--ECSCCEEEEETTT----TEEEETTS-------CE-EECSEEEECCC--EEECCCGGGTTHH---
T ss_pred             ccCHHHHHhCCCEE--EeCCEEEEEECCC----CEEEECCC-------CE-EECCEEEEcCC--CCccCCCCCCccc---
Confidence            11123344566554  8888999997654    45666553       46 89999999999  7788888888752   


Q ss_pred             CCCCCc-c-EEecccCCC-----CCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh
Q 022090          165 SATGTG-E-VIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (303)
Q Consensus       165 ~~~~~g-~-~~~~~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~  225 (303)
                          .+ . +++.....+     .....+++++|||+|.+|+|+|..|.+.|.+||++++.+ .++|+
T Consensus       125 ----~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~-~~l~~  187 (431)
T 1q1r_A          125 ----GKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA-RVLER  187 (431)
T ss_dssp             ----HHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-STTTT
T ss_pred             ----CCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCC-ccccc
Confidence                22 1 232211110     112347999999999999999999999999999999998 56654

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.80  E-value=5.1e-20  Score=168.92  Aligned_cols=194  Identities=16%  Similarity=0.165  Sum_probs=120.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecC----cccccCCCCCCCCCCCCCCCHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLA----KQFCQLPHLPFPSSYPMFVSRA   81 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   81 (303)
                      .+||+|||||++|+++|..|+++|.+|+|+|+ ..+||.|.+ .+.+...+...    ..+..++.+.+....+ ..+..
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~~  103 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADP-IFNWE  103 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCC-EECHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCC-ccCHH
Confidence            47999999999999999999999999999999 567886643 22221110000    0000011111110001 11222


Q ss_pred             H-----------HHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEe-ecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           82 Q-----------FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        82 ~-----------l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      .           +..++....+..+++.  ..+ .+..++  .    +.+.+. ++       .. +.+|+||+|||  +
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~i~--~----~~v~v~~~~-------~~-~~~d~lviAtG--~  164 (484)
T 3o0h_A          104 KLVAAKNKEISRLEGLYREGLQNSNVHI--YES-RAVFVD--E----HTLELSVTG-------ER-ISAEKILIATG--A  164 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEE--EES-CEEEEE--T----TEEEETTTC-------CE-EEEEEEEECCC--E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEe-EEEEee--C----CEEEEecCC-------eE-EEeCEEEEccC--C
Confidence            2           2233334444555543  333 344442  2    345553 22       56 89999999999  7


Q ss_pred             CCC-CCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH
Q 022090          150 NPF-TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       150 ~p~-~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~  228 (303)
                      .|. .|.+||.+.+          +++.++.. ....+++++|||+|.+|+|+|..+.+.|.+|+++++.+ .++|..+.
T Consensus       165 ~p~~~p~i~G~~~~----------~~~~~~~~-~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~  232 (484)
T 3o0h_A          165 KIVSNSAIKGSDLC----------LTSNEIFD-LEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGD-LILRNFDY  232 (484)
T ss_dssp             EECCC--CBTGGGS----------BCTTTGGG-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCH
T ss_pred             CcccCCCCCCcccc----------ccHHHHHh-HHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCC-ccccccCH
Confidence            788 8888887643          33333333 23457999999999999999999999999999999998 67666555


Q ss_pred             HHHHH
Q 022090          229 YLGVV  233 (303)
Q Consensus       229 ~~~~~  233 (303)
                      .+...
T Consensus       233 ~~~~~  237 (484)
T 3o0h_A          233 DLRQL  237 (484)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.80  E-value=2.3e-20  Score=169.57  Aligned_cols=159  Identities=17%  Similarity=0.174  Sum_probs=115.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhh-C------CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSL-Q------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVS   79 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~-~------g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (303)
                      +++|+|||||++|+++|..|++ .      |.+|+|||+.+.+||.|++.+.                       +.++.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~-----------------------p~~~~   59 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVA-----------------------PDHPK   59 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSC-----------------------TTCTG
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccC-----------------------CCCCC
Confidence            4799999999999999999999 7      9999999999888888864321                       22233


Q ss_pred             HHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC-CCCCCCCC
Q 022090           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN-PFTPDIRG  158 (303)
Q Consensus        80 ~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~-p~~p~~~g  158 (303)
                      ..++..++.+++++.+++.  +.+..+      .  .  .|.+.+        .. +.||+||+|||  +. |+.|++||
T Consensus        60 ~~~~~~~~~~~~~~~~v~~--~~~v~v------~--~--~v~~~~--------~~-~~~d~lViAtG--~~~~~~~~ipG  116 (456)
T 1lqt_A           60 IKSISKQFEKTAEDPRFRF--FGNVVV------G--E--HVQPGE--------LS-ERYDAVIYAVG--AQSDRMLNIPG  116 (456)
T ss_dssp             GGGGHHHHHHHHTSTTEEE--EESCCB------T--T--TBCHHH--------HH-HHSSEEEECCC--CCEECCCCCTT
T ss_pred             HHHHHHHHHHHHhcCCCEE--EeeEEE------C--C--EEEECC--------Ce-EeCCEEEEeeC--CCCCCCCCCCC
Confidence            4567777877777666543  545332      1  1  133332        24 78999999999  54 56778888


Q ss_pred             ccccccCCCCCccEEecccC-----------CCCCCCCCCeEEEECCCccHHHHHHHHhhc-------------------
Q 022090          159 LCSFCSSATGTGEVIHSTQY-----------KNGKPYGGKNVLVVGSGNSGMEIALDLANH-------------------  208 (303)
Q Consensus       159 ~~~~~~~~~~~g~~~~~~~~-----------~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~-------------------  208 (303)
                      .+ +      .+ ++++.++           .+...+.+++++|||+|++|+|+|..|++.                   
T Consensus       117 ~~-~------~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~  188 (456)
T 1lqt_A          117 ED-L------PG-SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRP  188 (456)
T ss_dssp             TT-S------TT-EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTT
T ss_pred             CC-C------CC-cEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHH
Confidence            76 3      44 4444332           222234689999999999999999999974                   


Q ss_pred             -c-CceEEEeecC
Q 022090          209 -A-AKTSLVVRSP  219 (303)
Q Consensus       209 -g-~~vt~~~r~~  219 (303)
                       + .+|+++.|++
T Consensus       189 ~g~~~V~lv~r~~  201 (456)
T 1lqt_A          189 RGIQEVVIVGRRG  201 (456)
T ss_dssp             CCCCEEEEECSSC
T ss_pred             CCCcEEEEEecCC
Confidence             4 4899999998

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.79  E-value=5.3e-20  Score=167.33  Aligned_cols=162  Identities=17%  Similarity=0.160  Sum_probs=115.7

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHH
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ   82 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (303)
                      ..+++|+|||||++|+++|..|++.|  .+|+|||+.+.++|.|+..+.                       +.++...+
T Consensus         4 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~-----------------------p~~~~~~~   60 (460)
T 1cjc_A            4 EQTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVA-----------------------PDHPEVKN   60 (460)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSC-----------------------TTCGGGGG
T ss_pred             CCCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccC-----------------------CCCccHHH
Confidence            34689999999999999999999998  899999999988888865321                       11222346


Q ss_pred             HHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCC-CCCCCCCccc
Q 022090           83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP-FTPDIRGLCS  161 (303)
Q Consensus        83 l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p-~~p~~~g~~~  161 (303)
                      +..++.++++++++..  ++++.|.        .  .|.+.+        .. +.||+||+|||  +.| +.|++||.+.
T Consensus        61 ~~~~~~~~~~~~gv~~--~~~~~v~--------~--~V~~~~--------~~-~~~d~lVlAtG--s~~~~~~~ipG~~~  117 (460)
T 1cjc_A           61 VINTFTQTARSDRCAF--YGNVEVG--------R--DVTVQE--------LQ-DAYHAVVLSYG--AEDHQALDIPGEEL  117 (460)
T ss_dssp             HHHHHHHHHTSTTEEE--EBSCCBT--------T--TBCHHH--------HH-HHSSEEEECCC--CCEECCCCCTTTTS
T ss_pred             HHHHHHHHHHhCCcEE--EeeeEEe--------e--EEEecc--------ce-EEcCEEEEecC--cCCCCCCCCCCCCC
Confidence            6777777777776554  6665441        1  122222        34 68999999999  554 6788998752


Q ss_pred             cccCCCCCccEEecccC----------CCCC-CCCCCeEEEECCCccHHHHHHHHh--------------------hccC
Q 022090          162 FCSSATGTGEVIHSTQY----------KNGK-PYGGKNVLVVGSGNSGMEIALDLA--------------------NHAA  210 (303)
Q Consensus       162 ~~~~~~~~g~~~~~~~~----------~~~~-~~~~~~v~ViG~G~~g~e~a~~l~--------------------~~g~  210 (303)
                             .+ ++++.++          .... .+.+++++|||+|++|+|+|..|+                    +.+.
T Consensus       118 -------~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~  189 (460)
T 1cjc_A          118 -------PG-VFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRV  189 (460)
T ss_dssp             -------TT-EEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCC
T ss_pred             -------Cc-EEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCC
Confidence                   33 3444332          1111 236899999999999999999999                    5676


Q ss_pred             -ceEEEeecCe
Q 022090          211 -KTSLVVRSPV  220 (303)
Q Consensus       211 -~vt~~~r~~~  220 (303)
                       +||++.|++.
T Consensus       190 ~~V~lv~r~~~  200 (460)
T 1cjc_A          190 KTVWIVGRRGP  200 (460)
T ss_dssp             CEEEEECSSCG
T ss_pred             cEEEEEEcCCh
Confidence             7999999984

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.79  E-value=3.3e-20  Score=176.99  Aligned_cols=166  Identities=21%  Similarity=0.231  Sum_probs=123.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .++||+|||||++|+++|..|+++|++|+|||+++.+||.|....                      ..+.+....++.+
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~----------------------~~p~~~~~~~~~~  447 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQES----------------------ALPGLSAWGRVKE  447 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHH----------------------TSTTCGGGGHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeecc----------------------CCCchhHHHHHHH
Confidence            457999999999999999999999999999999999998865310                      0112234457888


Q ss_pred             HHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC------CCCCCCCC
Q 022090           86 HLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN------PFTPDIRG  158 (303)
Q Consensus        86 ~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~------p~~p~~~g  158 (303)
                      |+...++++ +++.  ++++.++              ..+.       .. +.+|+||+|||....      |..|.+||
T Consensus       448 ~~~~~~~~~~gv~~--~~~~~v~--------------~~~~-------~~-~~~d~lvlAtG~~~~~~~~~~~~~~~i~G  503 (690)
T 3k30_A          448 YREAVLAELPNVEI--YRESPMT--------------GDDI-------VE-FGFEHVITATGATWRTDGVARFHTTALPI  503 (690)
T ss_dssp             HHHHHHHTCTTEEE--ESSCCCC--------------HHHH-------HH-TTCCEEEECCCEEECSSCCSSSCSSCCCB
T ss_pred             HHHHHHHHcCCCEE--EECCeec--------------HHHH-------hh-cCCCEEEEcCCCccccccccccCCCCCCC
Confidence            888888876 5543  5554321              1111       35 789999999995322      55777887


Q ss_pred             ccccccCCCCCccEEecccCCCCCCCCCCeEEEEC--CCccHHHHHHHHhhccCceEEEeecCeeeeehh
Q 022090          159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVG--SGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE  226 (303)
Q Consensus       159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG--~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~  226 (303)
                      .+.        ..+++..++.......+++++|||  +|.+|+|+|..|++.|.+||++++.+ .+++..
T Consensus       504 ~~~--------~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~-~l~~~~  564 (690)
T 3k30_A          504 AEG--------MQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGA-QVSSWT  564 (690)
T ss_dssp             CTT--------SEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSS-STTGGG
T ss_pred             CCC--------CcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccc-cccccc
Confidence            652        346666666555555678999999  99999999999999999999999998 555543

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.78  E-value=1.1e-19  Score=174.19  Aligned_cols=171  Identities=17%  Similarity=0.186  Sum_probs=118.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..+||+|||||++|+++|..|++.|++|+|||+++.+||.|....             .+         +.+.....+.+
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~-------------~~---------pg~~~~~~~~~  445 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVA-------------AL---------PGLGEWSYHRD  445 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHT-------------TS---------TTCGGGHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecc-------------cC---------CChHHHHHHHH
Confidence            357999999999999999999999999999999999999876420             00         11122345666


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC------CCCCCCCCc
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN------PFTPDIRGL  159 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~------p~~p~~~g~  159 (303)
                      |+...++.+.     ..+..+..+.. .    ..+...++       .. +.||+||+|||....      |..|++||.
T Consensus       446 ~~~~~i~~~~-----~~~~~~v~i~~-~----~~v~~~~~-------~~-~~~d~vviAtG~~~~~~~~~~p~~~~ipG~  507 (729)
T 1o94_A          446 YRETQITKLL-----KKNKESQLALG-Q----KPMTADDV-------LQ-YGADKVIIATGARWNTDGTNCLTHDPIPGA  507 (729)
T ss_dssp             HHHHHHHHHH-----HHSTTCEEECS-C----CCCCHHHH-------HT-SCCSEEEECCCEEECSSCCCTTTSSCCTTC
T ss_pred             HHHHHHHHhh-----cccCCceEEEe-C----eEEehhhc-------cc-cCCCEEEEcCCCCcccccccCccCCCCCCc
Confidence            6666555430     00001111111 0    12222222       34 789999999995322      567788998


Q ss_pred             cccccCCCCCccEEecccCCCCCCCCCCeEEEEC--CCccHHHHHHHHhhccCceEEEeecCeeeee
Q 022090          160 CSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVG--SGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (303)
Q Consensus       160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG--~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp  224 (303)
                      +.+      ...+++..++.......+++|+|||  +|.+|+|+|..|++.|.+||+++|.+  +++
T Consensus       508 ~~~------~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~--l~~  566 (729)
T 1o94_A          508 DAS------LPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH--LAN  566 (729)
T ss_dssp             CTT------STTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC--TTH
T ss_pred             ccc------CCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc--ccc
Confidence            755      4456666655544445678999999  99999999999999999999999987  444

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.75  E-value=1.2e-18  Score=165.87  Aligned_cols=150  Identities=20%  Similarity=0.268  Sum_probs=112.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .++||+|||||++|+++|..|++.|++|+|||+++.+||.|....             .+         +......++.+
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~-------------~~---------~~~~~~~~~~~  429 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAK-------------QI---------PGKEEFYETLR  429 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHT-------------TS---------TTCTTHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccc-------------cC---------CCHHHHHHHHH
Confidence            357999999999999999999999999999999999998875310             00         11112345666


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEE-eeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY-SGRFLVVASGETTNPFTPDIRGLCSFCS  164 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~-~ad~vIlAtG~~~~p~~p~~~g~~~~~~  164 (303)
                      ++...+++++++.  ++++.|+.                        .. + .||+||+|||  +.|..|++||.+.   
T Consensus       430 ~~~~~~~~~gv~~--~~~~~v~~------------------------~~-~~~~d~lviAtG--~~p~~~~i~G~~~---  477 (671)
T 1ps9_A          430 YYRRMIEVTGVTL--KLNHTVTA------------------------DQ-LQAFDETILASG--IVPRTPPIDGIDH---  477 (671)
T ss_dssp             HHHHHHHHHTCEE--EESCCCCS------------------------SS-SCCSSEEEECCC--EEECCCCCBTTTS---
T ss_pred             HHHHHHHHcCCEE--EeCcEecH------------------------HH-hhcCCEEEEccC--CCcCCCCCCCCCC---
Confidence            7777777777655  66653310                        12 5 7899999999  7888899998753   


Q ss_pred             CCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEE
Q 022090          165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSL  214 (303)
Q Consensus       165 ~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~  214 (303)
                           ..++++.++.......+++|+|||+|.+|+|+|..|++.|.+|++
T Consensus       478 -----~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv  522 (671)
T 1ps9_A          478 -----PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQ  522 (671)
T ss_dssp             -----TTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGG
T ss_pred             -----CcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCccc
Confidence                 235666555544445689999999999999999999998876553

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.75  E-value=6.8e-18  Score=166.02  Aligned_cols=181  Identities=15%  Similarity=0.150  Sum_probs=119.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .+||+|||||++|+++|..|++.|++|+|||+++.+||.|. .+ +...+         .         . .+..++...
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~-~~-~k~~i---------~---------~-~~~~~~~~~  186 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL-DT-AGEQI---------D---------G-MDSSAWIEQ  186 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG-GS-SCCEE---------T---------T-EEHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec-cC-Ccccc---------C---------C-CCHHHHHHH
Confidence            46899999999999999999999999999999999998876 21 11000         0         0 112344444


Q ss_pred             HHHHHHHc-CCCceeEeCeEEEEEEEeCC-------CCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCC
Q 022090           87 LDHYVSHF-NIGPSIRYQRSVESASYDEA-------TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG  158 (303)
Q Consensus        87 l~~~~~~~-~l~~~i~~~~~V~~i~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g  158 (303)
                      +.+.+..+ +++  ++.+++|.++.....       .+.+.+...+.... ..... +.||+||+|||  +.|+.|++||
T Consensus       187 ~~~~l~~~~~v~--~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~-~~~~~-i~~d~lVlATG--s~p~~~~ipG  260 (965)
T 2gag_A          187 VTSELAEAEETT--HLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSR-ERIWH-IRAKQVVLATG--AHERPIVFEN  260 (965)
T ss_dssp             HHHHHHHSTTEE--EESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCS-EEEEE-EEEEEEEECCC--EEECCCCCBT
T ss_pred             HHHHHhhcCCcE--EEeCCEEEeeecCCceeeeEeecccccccccccCCC-CceEE-EECCEEEECCC--CccCCCCCCC
Confidence            44445444 544  478888888753220       00111111000000 01146 89999999999  6788888888


Q ss_pred             ccccccCCCCCccEEecccC---CC-CCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeee
Q 022090          159 LCSFCSSATGTGEVIHSTQY---KN-GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVL  223 (303)
Q Consensus       159 ~~~~~~~~~~~g~~~~~~~~---~~-~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~l  223 (303)
                      .+.       .| ++++...   .. .....+++++|||+|.+|+|+|..|++.|.+||++++++ .++
T Consensus       261 ~~~-------~g-v~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~-~~~  320 (965)
T 2gag_A          261 NDR-------PG-IMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARS-SIS  320 (965)
T ss_dssp             CCS-------TT-EEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCS-SCC
T ss_pred             CCC-------CC-EEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCC-ccc
Confidence            753       33 3443211   11 122346899999999999999999999999999999998 443

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.74  E-value=1.5e-19  Score=166.13  Aligned_cols=195  Identities=19%  Similarity=0.226  Sum_probs=117.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .+++|||||||++|+++|..|.+.+++|+|||+++..  .     |..+       +....        ....+..++..
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~--~-----~~Pl-------L~~va--------~G~l~~~~i~~   98 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYF--L-----FTPL-------LPSAP--------VGTVDEKSIIE   98 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEE--E-----CGGG-------GGGTT--------TTSSCGGGGEE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCc--c-----cccc-------hhHHh--------hccccHHHhhh
Confidence            4568999999999999999999999999999998741  0     1000       00000        01111112211


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecC-----------CCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL-----------SPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~-----------~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      .+........-... ....+|++|+.+.  ...++...+..           ....+..+ +.||+||+|||  +.|+.+
T Consensus        99 p~~~~~~~~~~~v~-~~~~~v~~ID~~~--k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~-i~YD~LViAtG--s~~~~~  172 (502)
T 4g6h_A           99 PIVNFALKKKGNVT-YYEAEATSINPDR--NTVTIKSLSAVSQLYQPENHLGLHQAEPAE-IKYDYLISAVG--AEPNTF  172 (502)
T ss_dssp             EHHHHHTTCSSCEE-EEEEEEEEEEGGG--TEEEEEEEEEEEECSSSCCCCCCCTTCCEE-EECSEEEECCC--CEECCT
T ss_pred             hHHHHHHhhcCCeE-EEEEEEEEEEhhh--CEEEEeecccceeecccccccccccCCceE-EeCCEEEEcCC--cccccC
Confidence            22222222111121 3456788888765  33333221100           00002267 89999999999  888889


Q ss_pred             CCCCccccccCCCCCccEEecccCC-------------------CCC---CCCCCeEEEECCCccHHHHHHHHhhcc---
Q 022090          155 DIRGLCSFCSSATGTGEVIHSTQYK-------------------NGK---PYGGKNVLVVGSGNSGMEIALDLANHA---  209 (303)
Q Consensus       155 ~~~g~~~~~~~~~~~g~~~~~~~~~-------------------~~~---~~~~~~v~ViG~G~~g~e~a~~l~~~g---  209 (303)
                      .+||.+.++         +......                   ...   .....+++|||+|++|+|+|.+|++.+   
T Consensus       173 ~ipG~~e~a---------~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~  243 (502)
T 4g6h_A          173 GIPGVTDYG---------HFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQD  243 (502)
T ss_dssp             TCTTHHHHC---------EECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHT
T ss_pred             CccCccccc---------CCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHH
Confidence            999976531         1111100                   000   011247999999999999999998653   


Q ss_pred             -----------CceEEEeecCeeeeehhhHHHHHHHHhhC
Q 022090          210 -----------AKTSLVVRSPVHVLSREMVYLGVVLFKYV  238 (303)
Q Consensus       210 -----------~~vt~~~r~~~~~lp~~~~~~~~~~~~~l  238 (303)
                                 .+|+++++.+ .++|..+.+++..+.+.|
T Consensus       244 l~~~~~~~~~~~~V~lve~~~-~il~~~~~~~~~~~~~~L  282 (502)
T 4g6h_A          244 LRKFLPALAEEVQIHLVEALP-IVLNMFEKKLSSYAQSHL  282 (502)
T ss_dssp             HHHHCHHHHHHCEEEEECSSS-SSSTTSCHHHHHHHHHHH
T ss_pred             HHhhcccccccceeEEecccc-ccccCCCHHHHHHHHHHH
Confidence                       5799999999 788877666665554443

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.74  E-value=1.2e-18  Score=172.32  Aligned_cols=171  Identities=18%  Similarity=0.257  Sum_probs=116.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .+||+|||||++|+++|..|+++|+ +|+|||+.+.+||.+.+.               .+.+         ....++.+
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~---------------ip~~---------~~~~~~~~  242 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE---------------IPQF---------RLPYDVVN  242 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT---------------SCTT---------TSCHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccccc---------------CCcc---------cCCHHHHH
Confidence            5799999999999999999999999 799999999999876432               1111         11235666


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCC-CCcccccc
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI-RGLCSFCS  164 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~-~g~~~~~~  164 (303)
                      +..+++++++++.  ++++.+..         ..+.+.++       .. +.||+||+|||+ ..|+.+++ +|.+..  
T Consensus       243 ~~~~~~~~~gv~~--~~~~~v~~---------~~v~~~~~-------~~-~~~d~vvlAtGa-~~p~~l~~~~G~~~~--  300 (1025)
T 1gte_A          243 FEIELMKDLGVKI--ICGKSLSE---------NEITLNTL-------KE-EGYKAAFIGIGL-PEPKTDDIFQGLTQD--  300 (1025)
T ss_dssp             HHHHHHHTTTCEE--EESCCBST---------TSBCHHHH-------HH-TTCCEEEECCCC-CEECCCGGGTTCCTT--
T ss_pred             HHHHHHHHCCcEE--EcccEecc---------ceEEhhhc-------Cc-cCCCEEEEecCC-CCCCCCCCCCCCCCC--
Confidence            7677777777655  66665521         12333322       34 689999999994 14655543 455422  


Q ss_pred             CCCCCccEEecccCC--------------C-CCCCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecCeeeeehhhH
Q 022090          165 SATGTGEVIHSTQYK--------------N-GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       165 ~~~~~g~~~~~~~~~--------------~-~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~~~~lp~~~~  228 (303)
                          .+ ++++.++.              . .....+++|+|||+|.+|+|+|..+.+.|. +||+++|++..++|....
T Consensus       301 ----~g-v~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~  375 (1025)
T 1gte_A          301 ----QG-FYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPE  375 (1025)
T ss_dssp             ----TT-EEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHH
T ss_pred             ----CC-EEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHH
Confidence                22 33322221              1 112346799999999999999999999996 899999998556665443

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.69  E-value=4.5e-18  Score=152.72  Aligned_cols=178  Identities=15%  Similarity=0.103  Sum_probs=112.8

Q ss_pred             CcEEEECCcHHHHHHHHHHhh---CCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSL---QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~---~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      ++|+|||||++|+++|..|++   .|.+|+|+|+++..+....                 ++..     ........++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~-----------------~~~~-----~~~~~~~~~~~   59 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPA-----------------LPHV-----AIGVRDVDELK   59 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCS-----------------SCCC-----CSSCCCCCCEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccc-----------------hhhc-----ccCCcCHHHHH
Confidence            589999999999999999999   8999999999885321100                 0000     01111122333


Q ss_pred             HHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (303)
Q Consensus        85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~  164 (303)
                      .++.+.+++++++.  +.+ +|+.++.+.    ..|.+.++..   +..+ +.||+||+|||  +.|..|.+||.+..  
T Consensus        60 ~~~~~~~~~~gv~~--~~~-~v~~i~~~~----~~V~~~~g~~---~~~~-~~~d~lViAtG--~~~~~~~ipG~~~~--  124 (409)
T 3h8l_A           60 VDLSEALPEKGIQF--QEG-TVEKIDAKS----SMVYYTKPDG---SMAE-EEYDYVIVGIG--AHLATELVKGWDKY--  124 (409)
T ss_dssp             EEHHHHTGGGTCEE--EEC-EEEEEETTT----TEEEEECTTS---CEEE-EECSEEEECCC--CEECGGGSBTHHHH--
T ss_pred             HHHHHHHhhCCeEE--EEe-eEEEEeCCC----CEEEEccCCc---ccce-eeCCEEEECCC--CCcCccCCCChhhc--
Confidence            44555666667664  555 888887654    3566665432   2356 89999999999  67888888887642  


Q ss_pred             CCCCCccEEecccCCCCCCC------CCCeEEEECCCc-------------------------cHHHHHHHH----hhcc
Q 022090          165 SATGTGEVIHSTQYKNGKPY------GGKNVLVVGSGN-------------------------SGMEIALDL----ANHA  209 (303)
Q Consensus       165 ~~~~~g~~~~~~~~~~~~~~------~~~~v~ViG~G~-------------------------~g~e~a~~l----~~~g  209 (303)
                             ..+...+......      ..++++|||+|.                         .++|+|..+    .+.|
T Consensus       125 -------~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g  197 (409)
T 3h8l_A          125 -------GYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKG  197 (409)
T ss_dssp             -------CEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTT
T ss_pred             -------CcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcC
Confidence                   2333332221111      125677999992                         377888554    4556


Q ss_pred             C----ceEEEeecCeeeeehhhHHHH
Q 022090          210 A----KTSLVVRSPVHVLSREMVYLG  231 (303)
Q Consensus       210 ~----~vt~~~r~~~~~lp~~~~~~~  231 (303)
                      .    +|+++++.+  ++|.....+.
T Consensus       198 ~~~~~~v~~~~~~~--~l~~~~~~~~  221 (409)
T 3h8l_A          198 MLDKVHVTVFSPGE--YLSDLSPNSR  221 (409)
T ss_dssp             CTTTEEEEEECSSS--SSTTBCHHHH
T ss_pred             CCCCeEEEEEeCCc--cccccCHHHH
Confidence            3    899999887  5555443333

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.67  E-value=3.7e-18  Score=156.74  Aligned_cols=186  Identities=12%  Similarity=0.127  Sum_probs=107.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccC--cCCC-CceEEecCcccccCCCCCCCC------CC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWK--KYSY-DRLRLHLAKQFCQLPHLPFPS------SY   74 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~--~~~~-~~~~~~~~~~~~~~~~~~~~~------~~   74 (303)
                      ..+||+|||||++|+++|..|++.  +.+|+|||+++..+....  ...+ ....... .....+..++...      ..
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   88 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNV-TKTLRFKQWNGKERSIYFQPP   88 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTH-HHHCEEECTTSCEEESBSSCG
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccch-hhcccccccccccccccccch
Confidence            457999999999999999999887  889999999876541100  0000 0000000 0000000000000      00


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           75 PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        75 ~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      ..+....++.+     ....+  ..++++++|++++...    ++|.+.++       .+ +.||+||+|||  +.|+.|
T Consensus        89 ~~~~~~~~l~~-----~~~~g--v~~~~g~~v~~id~~~----~~V~~~~g-------~~-i~yd~lviATG--s~p~~~  147 (493)
T 1m6i_A           89 SFYVSAQDLPH-----IENGG--VAVLTGKKVVQLDVRD----NMVKLNDG-------SQ-ITYEKCLIATG--GTPRSL  147 (493)
T ss_dssp             GGSBCTTTTTT-----STTCE--EEEEETCCEEEEEGGG----TEEEETTS-------CE-EEEEEEEECCC--EEECCC
T ss_pred             Hhhcchhhhhh-----hhcCC--eEEEcCCEEEEEECCC----CEEEECCC-------CE-EECCEEEECCC--CCCCCC
Confidence            00111111100     01223  3447888999987654    56777654       56 89999999999  777766


Q ss_pred             CCCCcc--ccccCCCCCccEEecccCCC-----CCCCCCCeEEEECCCccHHHHHHHHhh----ccCceEEEeecC
Q 022090          155 DIRGLC--SFCSSATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLAN----HAAKTSLVVRSP  219 (303)
Q Consensus       155 ~~~g~~--~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~----~g~~vt~~~r~~  219 (303)
                      ++++..  .+      ...+.......+     .....+++++|||+|.+|+|+|..|++    .|.+|+++++.+
T Consensus       148 ~~~~~~~~~~------~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~  217 (493)
T 1m6i_A          148 SAIDRAGAEV------KSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK  217 (493)
T ss_dssp             HHHHTSCHHH------HHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCcccccccc------cCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCc
Confidence            654421  11      111222211111     011247899999999999999999987    467899998876

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.67  E-value=5.4e-18  Score=153.52  Aligned_cols=170  Identities=18%  Similarity=0.278  Sum_probs=112.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhh---CCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSL---QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~---~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (303)
                      +++|+|||||++|+++|..|++   .|.+|+|||+++...       |..      .       .  +.........+++
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~-------~~~------~-------~--~~~~~g~~~~~~~   61 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ-------FVP------S-------N--PWVGVGWKERDDI   61 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEE-------CGG------G-------H--HHHHHTSSCHHHH
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCc-------ccC------C-------c--cccccCccCHHHH
Confidence            4799999999999999999999   799999999987421       100      0       0  0000122334455


Q ss_pred             HHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022090           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC  163 (303)
Q Consensus        84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~  163 (303)
                      ...+.++++..+++.  + ..+|+.++.+.    ..|.+.++       .+ +.||+||+|||  +.|+.|.+||.+.+ 
T Consensus        62 ~~~l~~~~~~~gv~~--~-~~~v~~id~~~----~~V~~~~g-------~~-i~~d~lviAtG--~~~~~~~ipG~~~~-  123 (437)
T 3sx6_A           62 AFPIRHYVERKGIHF--I-AQSAEQIDAEA----QNITLADG-------NT-VHYDYLMIATG--PKLAFENVPGSDPH-  123 (437)
T ss_dssp             EEECHHHHHTTTCEE--E-CSCEEEEETTT----TEEEETTS-------CE-EECSEEEECCC--CEECGGGSTTCSTT-
T ss_pred             HHHHHHHHHHCCCEE--E-EeEEEEEEcCC----CEEEECCC-------CE-EECCEEEECCC--CCcCcccCCCCCcc-
Confidence            566677777777664  3 56888887654    35666654       56 89999999999  77888889998753 


Q ss_pred             cCCCCCccEEecccCCCCCC--------CCCCeEEEECCCcc----H--HHHHH----HHhhccCc-----eEEEeecCe
Q 022090          164 SSATGTGEVIHSTQYKNGKP--------YGGKNVLVVGSGNS----G--MEIAL----DLANHAAK-----TSLVVRSPV  220 (303)
Q Consensus       164 ~~~~~~g~~~~~~~~~~~~~--------~~~~~v~ViG~G~~----g--~e~a~----~l~~~g~~-----vt~~~r~~~  220 (303)
                           .+..++...+.+...        ..+++++|||+|.+    |  +|+|.    .+.+.|.+     ||++++.+ 
T Consensus       124 -----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~-  197 (437)
T 3sx6_A          124 -----EGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEP-  197 (437)
T ss_dssp             -----TSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSS-
T ss_pred             -----cCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCc-
Confidence                 343333332221100        11456789998655    4  88884    44555654     99999988 


Q ss_pred             ee
Q 022090          221 HV  222 (303)
Q Consensus       221 ~~  222 (303)
                      .+
T Consensus       198 ~~  199 (437)
T 3sx6_A          198 YI  199 (437)
T ss_dssp             ST
T ss_pred             cc
Confidence            44

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.63  E-value=5.3e-16  Score=138.61  Aligned_cols=135  Identities=16%  Similarity=0.188  Sum_probs=87.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc---------CCCC--ceEEecCccccc-----C-----
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK---------YSYD--RLRLHLAKQFCQ-----L-----   65 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~---------~~~~--~~~~~~~~~~~~-----~-----   65 (303)
                      .+||+|||||++|+++|..|+++|.+|+|+|+++.+|+.|..         +.+.  ...+.....+..     +     
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDF   83 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHH
Confidence            489999999999999999999999999999999877653320         0000  000000000000     0     


Q ss_pred             ------CCCCCC--CCCCCCC--CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCC--CCeEEEEEeecCCCCceeE
Q 022090           66 ------PHLPFP--SSYPMFV--SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA--TNMWNVKASNLLSPGREIE  133 (303)
Q Consensus        66 ------~~~~~~--~~~~~~~--~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~--~~~~~v~~~~~~~~~~~~~  133 (303)
                            ...++.  ..-..|+  ...++.+++.+.+++.+++.  +++++|+++..+++  .+.|.|.+.+        .
T Consensus        84 ~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i--~~~~~v~~i~~~~~g~~~~~~v~~~~--------g  153 (401)
T 2gqf_A           84 ISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKI--LLRSEVSQVERIQNDEKVRFVLQVNS--------T  153 (401)
T ss_dssp             HHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEE--ECSCCEEEEEECCSCSSCCEEEEETT--------E
T ss_pred             HHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEE--EeCCEEEEEEcccCcCCCeEEEEECC--------C
Confidence                  000000  0001112  56788889999888888765  99999999987621  2457777654        4


Q ss_pred             EEEeeCEEEEccCCCCCCC
Q 022090          134 EYYSGRFLVVASGETTNPF  152 (303)
Q Consensus       134 ~~~~ad~vIlAtG~~~~p~  152 (303)
                      + +++|.||+|||..+.|.
T Consensus       154 ~-i~ad~VVlAtG~~s~p~  171 (401)
T 2gqf_A          154 Q-WQCKNLIVATGGLSMPG  171 (401)
T ss_dssp             E-EEESEEEECCCCSSCGG
T ss_pred             E-EECCEEEECCCCccCCC
Confidence            6 89999999999766543

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.60  E-value=2.1e-15  Score=138.44  Aligned_cols=163  Identities=18%  Similarity=0.147  Sum_probs=107.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ++||+|||||++|+++|..|++. ++|+|||+++.+||.|....+.         .+.+         +.  ...++..+
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~---------~~g~---------~~--~~~~~~~~  166 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIK---------QEGF---------NK--DSRKVVEE  166 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSE---------ETTT---------TE--EHHHHHHH
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccc---------cCCC---------CC--CHHHHHHH
Confidence            36899999999999999999999 9999999999999887643210         0000         00  22333333


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA  166 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~  166 (303)
                      +   .+.+.....++++++|.+++.+.  ..+.+...+..    +... +.||+||+|||  +.|..|.+||.+.     
T Consensus       167 l---~~~l~~~v~~~~~~~v~~i~~~~--~~~~~~~~~~~----~~~~-~~~d~lvlAtG--a~~~~~~~~g~~~-----  229 (493)
T 1y56_A          167 L---VGKLNENTKIYLETSALGVFDKG--EYFLVPVVRGD----KLIE-ILAKRVVLATG--AIDSTMLFENNDM-----  229 (493)
T ss_dssp             H---HHTCCTTEEEETTEEECCCEECS--SSEEEEEEETT----EEEE-EEESCEEECCC--EEECCCCCTTTTS-----
T ss_pred             H---HHHHhcCCEEEcCCEEEEEEcCC--cEEEEEEecCC----eEEE-EECCEEEECCC--CCccCCCCCCCCC-----
Confidence            3   33332233447889998888765  44555443221    2246 89999999999  7778888888753     


Q ss_pred             CCCccEEecccCC---C-CCCCCCCeEEEECCCccHHHHHHHHhhccCce
Q 022090          167 TGTGEVIHSTQYK---N-GKPYGGKNVLVVGSGNSGMEIALDLANHAAKT  212 (303)
Q Consensus       167 ~~~g~~~~~~~~~---~-~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v  212 (303)
                        .+ +++..++.   . .....+++++|||+|.+|+|  ..+.+.|.++
T Consensus       230 --~g-v~~~~~~~~~~~~~~~~~~~~vvViGgG~~gle--~~l~~~GV~v  274 (493)
T 1y56_A          230 --PG-VFRRDFALEVMNVWEVAPGRKVAVTGSKADEVI--QELERWGIDY  274 (493)
T ss_dssp             --TT-EEEHHHHHHHHHTSCBCSCSEEEEESTTHHHHH--HHHHHHTCEE
T ss_pred             --CC-EEEcHHHHHHHHhcccCCCCEEEEECCCHHHHH--HHHHhCCcEE
Confidence              33 33332221   1 11234689999999999999  5566655443

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.44  E-value=7.5e-13  Score=118.66  Aligned_cols=134  Identities=15%  Similarity=0.143  Sum_probs=88.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc----C-------CCC-ceEEecCcccc----cC----
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK----Y-------SYD-RLRLHLAKQFC----QL----   65 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~----~-------~~~-~~~~~~~~~~~----~~----   65 (303)
                      ..+||+|||||++|+++|..|+++|.+|+|+|+.+.+|+.+..    .       ..+ ......+....    .+    
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~  105 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQD  105 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHH
Confidence            3579999999999999999999999999999999987754311    0       000 00000000000    00    


Q ss_pred             -------CCCCCC--CCCCC--CCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEE
Q 022090           66 -------PHLPFP--SSYPM--FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE  134 (303)
Q Consensus        66 -------~~~~~~--~~~~~--~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~  134 (303)
                             ...++.  ..-..  .....++.+.+.+.+++.++..  +++++|+++..++  +.|.|.+.+        .+
T Consensus       106 ~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i--~~~~~V~~i~~~~--~~~~V~~~~--------g~  173 (417)
T 3v76_A          106 FVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQL--RLETSIGEVERTA--SGFRVTTSA--------GT  173 (417)
T ss_dssp             HHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEE--ECSCCEEEEEEET--TEEEEEETT--------EE
T ss_pred             HHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEE--EECCEEEEEEEeC--CEEEEEECC--------cE
Confidence                   000000  00001  1245688889999888888765  9999999998876  568887765        36


Q ss_pred             EEeeCEEEEccCCCCCCC
Q 022090          135 YYSGRFLVVASGETTNPF  152 (303)
Q Consensus       135 ~~~ad~vIlAtG~~~~p~  152 (303)
                       +.||.||+|||.++.|.
T Consensus       174 -i~ad~VIlAtG~~S~p~  190 (417)
T 3v76_A          174 -VDAASLVVASGGKSIPK  190 (417)
T ss_dssp             -EEESEEEECCCCSSCGG
T ss_pred             -EEeeEEEECCCCccCCC
Confidence             89999999999877544

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.40  E-value=1.2e-12  Score=103.63  Aligned_cols=111  Identities=18%  Similarity=0.239  Sum_probs=81.2

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   87 (303)
                      +||+|||||++|+.+|..|++.|.+|+++|+.+..   +...          ..+..++.      ++......++.+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~---~~~~----------~~~~~~~~------~~~~~~~~~~~~~l   62 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSK---VKGV----------SRVPNYPG------LLDEPSGEELLRRL   62 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCT---TTTC----------SCCCCSTT------CTTCCCHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCc---ccCc----------hhhhccCC------CcCCCCHHHHHHHH
Confidence            68999999999999999999999999999998732   1100          00001111      11224577899999


Q ss_pred             HHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        88 ~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      .+.+++.+++.  +++ +|++++.++  +.|.|.+.+        .+ +++|.||+|+|  ..|.+
T Consensus        63 ~~~~~~~gv~v--~~~-~v~~i~~~~--~~~~v~~~~--------g~-i~ad~vI~A~G--~~~~~  112 (180)
T 2ywl_A           63 EAHARRYGAEV--RPG-VVKGVRDMG--GVFEVETEE--------GV-EKAERLLLCTH--KDPTL  112 (180)
T ss_dssp             HHHHHHTTCEE--EEC-CCCEEEECS--SSEEEECSS--------CE-EEEEEEEECCT--TCCHH
T ss_pred             HHHHHHcCCEE--EeC-EEEEEEEcC--CEEEEEECC--------CE-EEECEEEECCC--CCCCc
Confidence            99999988765  888 899998765  457777654        26 89999999999  44544

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.39  E-value=2e-12  Score=114.71  Aligned_cols=134  Identities=13%  Similarity=0.137  Sum_probs=85.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc------------C----------CCCceEEecCccccc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK------------Y----------SYDRLRLHLAKQFCQ   64 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~------------~----------~~~~~~~~~~~~~~~   64 (303)
                      .|||+||||||+|+++|..|+++|++|+|+||.+.+|.....            .          ......+..+.....
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRP   83 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceE
Confidence            489999999999999999999999999999998765431110            0          001111111110000


Q ss_pred             C--CCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEE-EEEeecCCCCceeEEEEeeCEE
Q 022090           65 L--PHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFL  141 (303)
Q Consensus        65 ~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~v  141 (303)
                      .  .............++..+..+|.+.+.+.|.+.  +++++|+++..++  +... +......    +..+ +++|.|
T Consensus        84 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~--~~~~~v~~~~~~~--~~~~~v~~~~~~----~~~~-~~a~~v  154 (397)
T 3oz2_A           84 IILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADV--WVKSPALGVIKEN--GKVAGAKIRHNN----EIVD-VRAKMV  154 (397)
T ss_dssp             EEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEE--ESSCCEEEEEEET--TEEEEEEEEETT----EEEE-EEEEEE
T ss_pred             eeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEE--eeeeeeeeeeecc--ceeeeeeecccc----cceE-EEEeEE
Confidence            0  000000011112478899999999998888766  8999999988766  3332 3332221    3357 899999


Q ss_pred             EEccCCCC
Q 022090          142 VVASGETT  149 (303)
Q Consensus       142 IlAtG~~~  149 (303)
                      |.|+|.+|
T Consensus       155 IgAdG~~S  162 (397)
T 3oz2_A          155 IAADGFES  162 (397)
T ss_dssp             EECCCTTC
T ss_pred             EeCCcccc
Confidence            99999766

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.37  E-value=1.4e-13  Score=123.09  Aligned_cols=116  Identities=22%  Similarity=0.253  Sum_probs=72.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      .++|+|||||++|+++|..|++.+  .+|+|||+++....+..      .. ...      ..         ..+.+++.
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~------~~-~v~------~g---------~~~~~~~~   59 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYM------SN-EVI------GG---------DRELASLR   59 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTT------HH-HHH------HT---------SSCGGGGE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccC------HH-HHh------cC---------CCCHHHHh
Confidence            478999999999999999998876  58999999874221100      00 000      00         00000010


Q ss_pred             HHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccc
Q 022090           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSF  162 (303)
Q Consensus        85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~  162 (303)
                      ..+.. +...+++   ....+|++++.+.    ..|.+.++       .+ +.||+||+|||  +.+.++.+||.+..
T Consensus        60 ~~~~~-~~~~gv~---~i~~~v~~id~~~----~~v~~~~g-------~~-i~yd~LviAtG--~~~~~~~i~G~~e~  119 (401)
T 3vrd_B           60 VGYDG-LRAHGIQ---VVHDSALGIDPDK----KLVKTAGG-------AE-FAYDRCVVAPG--IDLLYDKIEGYSEA  119 (401)
T ss_dssp             ECSHH-HHHTTCE---EECSCEEEEETTT----TEEEETTS-------CE-EECSEEEECCC--EEECGGGSBTCCSG
T ss_pred             hCHHH-HHHCCCE---EEEeEEEEEEccC----cEEEeccc-------ce-eecceeeeccC--CccccCCccCchhh
Confidence            00111 2234554   3456788887655    45666654       57 89999999999  77888888887654

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.35  E-value=2.4e-12  Score=119.95  Aligned_cols=169  Identities=13%  Similarity=0.130  Sum_probs=100.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC-CCCCccCcCCCCceEEec-----------Ccc--------cccC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKKYSYDRLRLHL-----------AKQ--------FCQL   65 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~-~~gg~w~~~~~~~~~~~~-----------~~~--------~~~~   65 (303)
                      ..+||+|||||++|+++|..|++.|.+|+|+|++. .+|...   +.+......           ...        ...+
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~---Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f  103 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMS---CNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQF  103 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCS---SSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeeccccccccc---ccccccchhhHHHHHHHHHhccHHHHHhhhcccch
Confidence            35899999999999999999999999999999974 343211   111110000           000        0000


Q ss_pred             CCC---CCCCCC--CCCCCHHHHHHHHHHHHHH-cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeC
Q 022090           66 PHL---PFPSSY--PMFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR  139 (303)
Q Consensus        66 ~~~---~~~~~~--~~~~~~~~l~~~l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad  139 (303)
                      ...   ..+..+  ....++..+...+.+.++. .++.+   ++++|+.+..++ +..+.|.+.++       .. +.|+
T Consensus       104 ~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I---~~~~V~~L~~e~-g~V~GV~t~dG-------~~-I~Ad  171 (651)
T 3ces_A          104 RILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI---FQQAVEDLIVEN-DRVVGAVTQMG-------LK-FRAK  171 (651)
T ss_dssp             EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEE---EECCEEEEEESS-SBEEEEEETTS-------EE-EEEE
T ss_pred             hhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEE---EEEEEEEEEecC-CEEEEEEECCC-------CE-EECC
Confidence            000   000000  0123456788888888877 46542   567899887654 23446666543       57 8999


Q ss_pred             EEEEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEee
Q 022090          140 FLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR  217 (303)
Q Consensus       140 ~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r  217 (303)
                      .||+|||.+  +..+.++|...+      .                +.+   +| |.++++++..|.+.|.+|+.+..
T Consensus       172 ~VVLATGt~--s~~~~i~G~~~~------~----------------~gr---iG-g~~a~eLA~~L~~lG~~v~~~~t  221 (651)
T 3ces_A          172 AVVLTVGTF--LDGKIHIGLDNY------S----------------GGR---AG-DPPSIPLSRRLRELPLRVGRLKT  221 (651)
T ss_dssp             EEEECCSTT--TCCEEECC---------------------------------------CCHHHHHHHTTTCCEEEECC
T ss_pred             EEEEcCCCC--ccCccccCcccC------C----------------CCC---cc-chhhhHHHHHHHhcCCeEEEecC
Confidence            999999954  444456665433      1                222   56 78999999999999999988853

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.35  E-value=6.9e-12  Score=112.59  Aligned_cols=135  Identities=16%  Similarity=0.207  Sum_probs=86.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC----CCCccCcCC--------------------CCceEEecCccc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC----YASIWKKYS--------------------YDRLRLHLAKQF   62 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~----~gg~w~~~~--------------------~~~~~~~~~~~~   62 (303)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+.    .|......+                    ............
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   84 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEI   84 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCee
Confidence            47999999999999999999999999999999862    232211100                    001111111111


Q ss_pred             c--cCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeC
Q 022090           63 C--QLPHLPF-PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR  139 (303)
Q Consensus        63 ~--~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad  139 (303)
                      .  .+..... ........++..+...+.+.+++.|++.  +++++|++++.++  +.+.+.+...++   +..+ +++|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i--~~~~~v~~i~~~~--~~~~v~v~~~~g---~~~~-~~a~  156 (421)
T 3nix_A           85 ADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDV--EYEVGVTDIKFFG--TDSVTTIEDING---NKRE-IEAR  156 (421)
T ss_dssp             EEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEE--ECSEEEEEEEEET--TEEEEEEEETTS---CEEE-EEEE
T ss_pred             EEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEeC--CEEEEEEEcCCC---CEEE-EEcC
Confidence            1  1111000 0111223678899999999998888665  9999999998876  445454433221   2247 8999


Q ss_pred             EEEEccCCCC
Q 022090          140 FLVVASGETT  149 (303)
Q Consensus       140 ~vIlAtG~~~  149 (303)
                      .||.|+|.++
T Consensus       157 ~vV~A~G~~s  166 (421)
T 3nix_A          157 FIIDASGYGR  166 (421)
T ss_dssp             EEEECCGGGC
T ss_pred             EEEECCCCch
Confidence            9999999655

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.34  E-value=8.1e-12  Score=114.71  Aligned_cols=137  Identities=19%  Similarity=0.199  Sum_probs=89.0

Q ss_pred             CCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc--------------CCCCceEEecCcccccCCC--
Q 022090            4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--------------YSYDRLRLHLAKQFCQLPH--   67 (303)
Q Consensus         4 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~--------------~~~~~~~~~~~~~~~~~~~--   67 (303)
                      .+..+||+|||||++|+++|..|++.|++|+|+|+.+..+..-+.              ...+.+..........+..  
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   87 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLP   87 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEE
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhcccccccccccee
Confidence            345689999999999999999999999999999998754321000              0010000000000000000  


Q ss_pred             CC---CCCCC--CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEE
Q 022090           68 LP---FPSSY--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV  142 (303)
Q Consensus        68 ~~---~~~~~--~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI  142 (303)
                      +.   .+..+  ....++..+.+.|.+.+++.++++  +++++|++++.++  +.++|++.++.+    ..+ +++|+||
T Consensus        88 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~~~g----~~~-~~a~~vV  158 (500)
T 2qa1_A           88 IDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADI--RRGHEVLSLTDDG--AGVTVEVRGPEG----KHT-LRAAYLV  158 (500)
T ss_dssp             EEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEE--EETCEEEEEEEET--TEEEEEEEETTE----EEE-EEESEEE
T ss_pred             cccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEE--ECCcEEEEEEEcC--CeEEEEEEcCCC----CEE-EEeCEEE
Confidence            00   00011  122457889999999998887655  9999999998876  567888776421    147 8999999


Q ss_pred             EccCCCC
Q 022090          143 VASGETT  149 (303)
Q Consensus       143 lAtG~~~  149 (303)
                      .|+|.+|
T Consensus       159 gADG~~S  165 (500)
T 2qa1_A          159 GCDGGRS  165 (500)
T ss_dssp             ECCCTTC
T ss_pred             ECCCcch
Confidence            9999876

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.34  E-value=3.1e-12  Score=114.47  Aligned_cols=131  Identities=22%  Similarity=0.299  Sum_probs=85.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc-------------------cCc-----CCCCceEEecCc-
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-------------------WKK-----YSYDRLRLHLAK-   60 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~-------------------w~~-----~~~~~~~~~~~~-   60 (303)
                      .++||+|||||++|+++|..|+++|++|+|+|+.+.....                   |..     .....+...... 
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence            3589999999999999999999999999999998754311                   000     011122221111 


Q ss_pred             --ccccCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090           61 --QFCQLPHLPFP---SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (303)
Q Consensus        61 --~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (303)
                        ....++.....   .......++..+.+.|.+.+..    ..++++++|++++.++  +.++|++.++       .+ 
T Consensus       102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-  167 (407)
T 3rp8_A          102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR----DSVQFGKRVTRCEEDA--DGVTVWFTDG-------SS-  167 (407)
T ss_dssp             CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG----GGEEESCCEEEEEEET--TEEEEEETTS-------CE-
T ss_pred             CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc----CEEEECCEEEEEEecC--CcEEEEEcCC-------CE-
Confidence              00111100000   0112234678888888888765    3459999999999876  5688888765       46 


Q ss_pred             EeeCEEEEccCCCCC
Q 022090          136 YSGRFLVVASGETTN  150 (303)
Q Consensus       136 ~~ad~vIlAtG~~~~  150 (303)
                      +.+|.||.|+|.+|.
T Consensus       168 ~~a~~vV~AdG~~S~  182 (407)
T 3rp8_A          168 ASGDLLIAADGSHSA  182 (407)
T ss_dssp             EEESEEEECCCTTCS
T ss_pred             EeeCEEEECCCcChH
Confidence            899999999998664

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.34  E-value=4.1e-12  Score=104.91  Aligned_cols=124  Identities=15%  Similarity=0.075  Sum_probs=80.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .+||+|||||++|+++|..|++.|.+|+++|+.....|.|........  ........+.+       ...+++..+..+
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~--~~~~~~~~~~d-------~~g~~~~~~~~~   73 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPF--PPGSLLERAYD-------PKDERVWAFHAR   73 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCC--CTTCHHHHHCC-------TTCCCHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCcccccc--chhhHHhhhcc-------CCCCCHHHHHHH
Confidence            479999999999999999999999999999998433333321110000  00000000000       011156788888


Q ss_pred             HHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCC
Q 022090           87 LDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP  151 (303)
Q Consensus        87 l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p  151 (303)
                      +.+.+++. ++..  + +++|+++..++ +..+.|.+.++       .+ +.+|.||+|+|.++..
T Consensus        74 l~~~~~~~~gv~i--~-~~~v~~i~~~~-~~v~~v~~~~g-------~~-i~a~~VV~A~G~~s~~  127 (232)
T 2cul_A           74 AKYLLEGLRPLHL--F-QATATGLLLEG-NRVVGVRTWEG-------PP-ARGEKVVLAVGSFLGA  127 (232)
T ss_dssp             HHHHHHTCTTEEE--E-ECCEEEEEEET-TEEEEEEETTS-------CC-EECSEEEECCTTCSSC
T ss_pred             HHHHHHcCCCcEE--E-EeEEEEEEEeC-CEEEEEEECCC-------CE-EECCEEEECCCCChhh
Confidence            98888876 7653  5 57899998765 22345666543       46 8999999999975543

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.32  E-value=1.3e-12  Score=119.97  Aligned_cols=139  Identities=15%  Similarity=0.101  Sum_probs=88.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceE-EecCccc-ccCCCCCCCCCCCCCCCHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLR-LHLAKQF-CQLPHLPFPSSYPMFVSRAQF   83 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l   83 (303)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.+.+|+....+.++... ....... .....+.  .......+..++
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~~l  168 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFC--TGTLDHISIRQL  168 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTT--CTTCCEEEHHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCcccccccc--ccccccCCHHHH
Confidence            46899999999999999999999999999999998776542111111000 0000000 0000000  000112356788


Q ss_pred             HHHHHHHHHHcCCCceeEeCeEEEEEEEeC-CCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCC
Q 022090           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP  151 (303)
Q Consensus        84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p  151 (303)
                      .+++.+.+++.++.+  +++++|+++..++ +.+.|.|.+.+..++  +..+ +.+|+||+|+|..+.+
T Consensus       169 ~~~L~~~~~~~gv~v--~~~~~v~~i~~~~~~~~~~~v~~~~~~~g--~~~~-i~ad~VV~A~G~~S~~  232 (497)
T 2bry_A          169 QLLLLKVALLLGVEI--HWGVKFTGLQPPPRKGSGWRAQLQPNPPA--QLAS-YEFDVLISAAGGKFVP  232 (497)
T ss_dssp             HHHHHHHHHHTTCEE--EESCEEEEEECCCSTTCCBEEEEESCCCH--HHHT-CCBSEEEECCCTTCCC
T ss_pred             HHHHHHHHHhCCCEE--EeCCEEEEEEEecCCCCEEEEEEEECCCC--CEEE-EEcCEEEECCCCCccc
Confidence            899999888877655  9999999998752 234688877421000  1135 8999999999966544

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.32  E-value=2.1e-12  Score=112.93  Aligned_cols=128  Identities=16%  Similarity=0.242  Sum_probs=82.3

Q ss_pred             CcEEEECCcHHHHHHHHHHhh---CCCCeEEEecCCCCCCccCcCC---CCceEEecCcccccCCC--------------
Q 022090            8 VEVIMVGAGTSGLATAACLSL---QSIPYVILERENCYASIWKKYS---YDRLRLHLAKQFCQLPH--------------   67 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~---~g~~v~iie~~~~~gg~w~~~~---~~~~~~~~~~~~~~~~~--------------   67 (303)
                      +||+|||||++|+++|..|++   .|++|+|||+++..||.|....   +..........+.....              
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~   81 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELL   81 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHH
Confidence            589999999999999999999   8999999999999998665321   11112221111110000              


Q ss_pred             -----CCCC---------CCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeE
Q 022090           68 -----LPFP---------SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIE  133 (303)
Q Consensus        68 -----~~~~---------~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~  133 (303)
                           .+++         .....|.....+..+.+..++..+.+  |+++++|++++.++  +.|+|.+.++       .
T Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~--i~~~~~V~~i~~~~--~~~~v~~~~g-------~  150 (342)
T 3qj4_A           82 AYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAE--VYFRHRVTQINLRD--DKWEVSKQTG-------S  150 (342)
T ss_dssp             HTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCE--EESSCCEEEEEECS--SSEEEEESSS-------C
T ss_pred             hCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCE--EEeCCEEEEEEEcC--CEEEEEECCC-------C
Confidence                 0000         00111222223344455555555654  49999999999865  5699888764       4


Q ss_pred             EEEeeCEEEEccCC
Q 022090          134 EYYSGRFLVVASGE  147 (303)
Q Consensus       134 ~~~~ad~vIlAtG~  147 (303)
                      . +.||.||+|+..
T Consensus       151 ~-~~ad~vV~A~p~  163 (342)
T 3qj4_A          151 P-EQFDLIVLTMPV  163 (342)
T ss_dssp             C-EEESEEEECSCH
T ss_pred             E-EEcCEEEECCCH
Confidence            5 789999999984

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.31  E-value=1.3e-11  Score=113.34  Aligned_cols=135  Identities=16%  Similarity=0.132  Sum_probs=88.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc--------------CCCCceE---EecCcccc--cCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--------------YSYDRLR---LHLAKQFC--QLP   66 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~--------------~~~~~~~---~~~~~~~~--~~~   66 (303)
                      ..+||+|||||++|+++|..|+++|++|+|+|+.+..+...+.              ...+.+.   ......+.  .+.
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   90 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVD   90 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecc
Confidence            4679999999999999999999999999999998654321100              0010000   00000000  000


Q ss_pred             CCCCCCCCC--CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEc
Q 022090           67 HLPFPSSYP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA  144 (303)
Q Consensus        67 ~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlA  144 (303)
                      ....+..++  ...++..+.+.|.+.+.+.++++  +++++|++++.++  +.++|++.++.+   + .+ +++|+||.|
T Consensus        91 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~~~g---~-~~-~~a~~vVgA  161 (499)
T 2qa2_A           91 FGVLEGAHYGVKAVPQSTTESVLEEWALGRGAEL--LRGHTVRALTDEG--DHVVVEVEGPDG---P-RS-LTTRYVVGC  161 (499)
T ss_dssp             GGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEE--EESCEEEEEEECS--SCEEEEEECSSC---E-EE-EEEEEEEEC
T ss_pred             cccCCCCCCceEecCHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEeC--CEEEEEEEcCCC---c-EE-EEeCEEEEc
Confidence            000011111  23467889999999998887655  9999999998876  457888776421   1 47 899999999


Q ss_pred             cCCCC
Q 022090          145 SGETT  149 (303)
Q Consensus       145 tG~~~  149 (303)
                      +|.+|
T Consensus       162 DG~~S  166 (499)
T 2qa2_A          162 DGGRS  166 (499)
T ss_dssp             CCTTC
T ss_pred             cCccc
Confidence            99876

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.30  E-value=1.9e-11  Score=113.23  Aligned_cols=137  Identities=17%  Similarity=0.160  Sum_probs=89.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC------------------------CCC---ce---E
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY------------------------SYD---RL---R   55 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~------------------------~~~---~~---~   55 (303)
                      ..+||+|||||++|+++|..|+++|++|+|+|+.+..+..-+..                        ...   .+   .
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   83 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRL   83 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEE
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeE
Confidence            35799999999999999999999999999999987543210000                        000   00   0


Q ss_pred             Eec--Ccccc----cCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCC--eEEEEE
Q 022090           56 LHL--AKQFC----QLPH-----LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN--MWNVKA  122 (303)
Q Consensus        56 ~~~--~~~~~----~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~--~~~v~~  122 (303)
                      ...  ...+.    .+..     ...........++..+..+|.+.+++.+++.  +++++|++++.+++..  .+++.+
T Consensus        84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i--~~~~~v~~i~~~~~~~~~~v~v~~  161 (535)
T 3ihg_A           84 AESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAI--RFGTRLLSFRQHDDDAGAGVTARL  161 (535)
T ss_dssp             ESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEE--ESSCEEEEEEEECGGGCSEEEEEE
T ss_pred             EeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEE--EeCCEEEEEEECCCCccccEEEEE
Confidence            000  00000    0000     0000011234578899999999998887655  9999999999876211  678877


Q ss_pred             eecCCCCceeEEEEeeCEEEEccCCCC
Q 022090          123 SNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus       123 ~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      .++.+    ..+ +++|+||.|+|.+|
T Consensus       162 ~~~~~----~~~-i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          162 AGPDG----EYD-LRAGYLVGADGNRS  183 (535)
T ss_dssp             EETTE----EEE-EEEEEEEECCCTTC
T ss_pred             EcCCC----eEE-EEeCEEEECCCCcc
Confidence            76432    257 89999999999866

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.30  E-value=9.1e-12  Score=116.01  Aligned_cols=134  Identities=16%  Similarity=0.126  Sum_probs=85.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC--------------CCCce---EEecCcc-c------
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------------SYDRL---RLHLAKQ-F------   62 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~--------------~~~~~---~~~~~~~-~------   62 (303)
                      .+||+|||||++|+++|..|++.|++|+|||+.+......+..              .++.+   ....... +      
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  128 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQ  128 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCcccc
Confidence            4799999999999999999999999999999987543111000              00000   0000000 0      


Q ss_pred             -ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEE
Q 022090           63 -CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL  141 (303)
Q Consensus        63 -~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v  141 (303)
                       ..+.....+.......++..+...|.+.+++.++++  +++++|++++.++  +.++|++.+.++   + .+ +++|+|
T Consensus       129 ~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i--~~~~~v~~l~~~~--~~v~v~~~~~~G---~-~~-~~a~~v  199 (570)
T 3fmw_A          129 GLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEI--PRGHEVTRLRQDA--EAVEVTVAGPSG---P-YP-VRARYG  199 (570)
T ss_dssp             CCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEEC--CBSCEEEECCBCS--SCEEEEEEETTE---E-EE-EEESEE
T ss_pred             cccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEE--EeCCEEEEEEEcC--CeEEEEEEeCCC---c-EE-EEeCEE
Confidence             000011111111234678899999999988877655  8999999998765  567787743211   1 47 899999


Q ss_pred             EEccCCCC
Q 022090          142 VVASGETT  149 (303)
Q Consensus       142 IlAtG~~~  149 (303)
                      |.|+|.+|
T Consensus       200 V~ADG~~S  207 (570)
T 3fmw_A          200 VGCDGGRS  207 (570)
T ss_dssp             EECSCSSC
T ss_pred             EEcCCCCc
Confidence            99999766

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.29  E-value=3.9e-11  Score=112.15  Aligned_cols=138  Identities=14%  Similarity=0.196  Sum_probs=87.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC------CCCeEEEecCCCCCCccCcC--------------------CCC------ce
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ------SIPYVILERENCYASIWKKY--------------------SYD------RL   54 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~------g~~v~iie~~~~~gg~w~~~--------------------~~~------~~   54 (303)
                      .+||+|||||++|+++|..|++.      |++|+|+|+.+.+|+.....                    ...      .+
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~  114 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRF  114 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhe
Confidence            47999999999999999999999      99999999987766421100                    000      01


Q ss_pred             EEecCcccccCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeec---CCC
Q 022090           55 RLHLAKQFCQLPHLPF---PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL---LSP  128 (303)
Q Consensus        55 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~---~~~  128 (303)
                      ..........++..+.   ........++..+..+|.+.+++.++++  ++++.|+++..++++..+.|.+.+.   .++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i--~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G  192 (584)
T 2gmh_A          115 GILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEV--YPGYAAAEILFHEDGSVKGIATNDVGIQKDG  192 (584)
T ss_dssp             EEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEE--ETTCCEEEEEECTTSSEEEEEECCEEECTTS
T ss_pred             eeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEE--EcCCEEEEEEEcCCCCEEEEEeCCccccCCC
Confidence            0101100111111110   0011123478899999999998888665  9999999998865333334666520   011


Q ss_pred             Ccee-------EEEEeeCEEEEccCCCC
Q 022090          129 GREI-------EEYYSGRFLVVASGETT  149 (303)
Q Consensus       129 ~~~~-------~~~~~ad~vIlAtG~~~  149 (303)
                        +.       .+ +.+|.||+|+|.++
T Consensus       193 --~~~~~~~~g~~-i~Ad~VV~AdG~~S  217 (584)
T 2gmh_A          193 --APKTTFERGLE-LHAKVTIFAEGCHG  217 (584)
T ss_dssp             --CEEEEEECCCE-EECSEEEECCCTTC
T ss_pred             --CcccccCCceE-EECCEEEEeeCCCc
Confidence              11       46 89999999999866

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.29  E-value=1.5e-11  Score=109.72  Aligned_cols=130  Identities=15%  Similarity=0.188  Sum_probs=82.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC-----CCccCcCCCCce---------------------EEecC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-----ASIWKKYSYDRL---------------------RLHLA   59 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~-----gg~w~~~~~~~~---------------------~~~~~   59 (303)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.+..     |+.|........                     .....
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~  104 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADE  104 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECC
Confidence            3579999999999999999999999999999998643     322221100000                     00000


Q ss_pred             c--ccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEE
Q 022090           60 K--QFCQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY  136 (303)
Q Consensus        60 ~--~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~  136 (303)
                      .  ...... .+.. .......++..+.++|.+.+..    ..++++++|++++.++  +.|+|++.++       .+ +
T Consensus       105 ~g~~~~~~~-~~~~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~  169 (398)
T 2xdo_A          105 KGNILSTKN-VKPENRFDNPEINRNDLRAILLNSLEN----DTVIWDRKLVMLEPGK--KKWTLTFENK-------PS-E  169 (398)
T ss_dssp             SSEEEEECC-CGGGTTSSCCEECHHHHHHHHHHTSCT----TSEEESCCEEEEEECS--SSEEEEETTS-------CC-E
T ss_pred             CCCchhhcc-ccccCCCCCceECHHHHHHHHHhhcCC----CEEEECCEEEEEEECC--CEEEEEECCC-------cE-E
Confidence            0  000000 0000 0011134677787777765532    3458999999998866  5688888764       46 8


Q ss_pred             eeCEEEEccCCCCC
Q 022090          137 SGRFLVVASGETTN  150 (303)
Q Consensus       137 ~ad~vIlAtG~~~~  150 (303)
                      ++|.||.|+|.+|.
T Consensus       170 ~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          170 TADLVILANGGMSK  183 (398)
T ss_dssp             EESEEEECSCTTCS
T ss_pred             ecCEEEECCCcchh
Confidence            99999999998764

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.28  E-value=7.5e-12  Score=110.94  Aligned_cols=126  Identities=12%  Similarity=0.099  Sum_probs=83.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc------------------------CCCCceEEecCccc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK------------------------YSYDRLRLHLAKQF   62 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~------------------------~~~~~~~~~~~~~~   62 (303)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+..++.-..                        .....+........
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   90 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS   90 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence            579999999999999999999999999999998765421000                        00011111110000


Q ss_pred             ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEE
Q 022090           63 CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV  142 (303)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI  142 (303)
                        +..++.+.......++..+.+++.+.+.+.++++  +++++|++++. +  +  .|++.++       .+ +++|.||
T Consensus        91 --~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i--~~~~~v~~i~~-~--~--~v~~~~g-------~~-~~ad~vV  153 (379)
T 3alj_A           91 --VSKETFNGLPWRIMTRSHLHDALVNRARALGVDI--SVNSEAVAADP-V--G--RLTLQTG-------EV-LEADLIV  153 (379)
T ss_dssp             --EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEE--ESSCCEEEEET-T--T--EEEETTS-------CE-EECSEEE
T ss_pred             --eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEE--EeCCEEEEEEe-C--C--EEEECCC-------CE-EEcCEEE
Confidence              0000000000123467899999999988877655  99999999976 2  3  6777654       46 8999999


Q ss_pred             EccCCCC
Q 022090          143 VASGETT  149 (303)
Q Consensus       143 lAtG~~~  149 (303)
                      .|+|.++
T Consensus       154 ~AdG~~s  160 (379)
T 3alj_A          154 GADGVGS  160 (379)
T ss_dssp             ECCCTTC
T ss_pred             ECCCccH
Confidence            9999765

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.28  E-value=3.4e-11  Score=110.98  Aligned_cols=142  Identities=20%  Similarity=0.263  Sum_probs=86.1

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC----CCCccCcC------------------CCCce---E
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC----YASIWKKY------------------SYDRL---R   55 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~----~gg~w~~~------------------~~~~~---~   55 (303)
                      |+.....+||+|||||++|+++|..|++.|++|+|+|+.+.    .|..+...                  .+...   .
T Consensus         1 M~~~~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~   80 (512)
T 3e1t_A            1 MSTRPEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGT   80 (512)
T ss_dssp             ----CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEE
T ss_pred             CCCCCccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCce
Confidence            54444458999999999999999999999999999999872    22211100                  00000   0


Q ss_pred             EecCcc----cccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeE-EEEEeecCCCC
Q 022090           56 LHLAKQ----FCQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPG  129 (303)
Q Consensus        56 ~~~~~~----~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~  129 (303)
                      ......    ...+...+. ........++..+..+|.+.+++.++.+  +++++|+++..++  +.. .|.+...++  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i--~~~~~V~~v~~~~--~~v~gv~~~~~dG--  154 (512)
T 3e1t_A           81 FRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDV--RERHEVIDVLFEG--ERAVGVRYRNTEG--  154 (512)
T ss_dssp             EECSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEE--ESSCEEEEEEEET--TEEEEEEEECSSS--
T ss_pred             EEecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEEC--CEEEEEEEEeCCC--
Confidence            000000    000111100 0111123578899999999998888655  9999999998865  332 244443211  


Q ss_pred             ceeEEEEeeCEEEEccCCCCC
Q 022090          130 REIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       130 ~~~~~~~~ad~vIlAtG~~~~  150 (303)
                       +..+ +.+|.||.|+|.++.
T Consensus       155 -~~~~-i~ad~VI~AdG~~S~  173 (512)
T 3e1t_A          155 -VELM-AHARFIVDASGNRTR  173 (512)
T ss_dssp             -CEEE-EEEEEEEECCCTTCS
T ss_pred             -CEEE-EEcCEEEECCCcchH
Confidence             2247 899999999997663

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.28  E-value=1.1e-11  Score=115.07  Aligned_cols=169  Identities=12%  Similarity=0.058  Sum_probs=105.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC-CCCCccCcCCCCceEEec-----------Ccc--------cccC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKKYSYDRLRLHL-----------AKQ--------FCQL   65 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~-~~gg~w~~~~~~~~~~~~-----------~~~--------~~~~   65 (303)
                      ..+||+|||||++|++||..|++.|.+|+|+|++. .+|..   .+.+......           ...        ...+
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~---~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f  102 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQM---SCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQF  102 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC---CSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCc---CccccccccchHHHHHHHHHhhhHHHHHhhhcccce
Confidence            35899999999999999999999999999999974 34421   1111110000           000        0000


Q ss_pred             CCCC---CCCCC--CCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeC
Q 022090           66 PHLP---FPSSY--PMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR  139 (303)
Q Consensus        66 ~~~~---~~~~~--~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad  139 (303)
                      ....   -+..+  ....++..+...+.+.++.. ++..   ++++|+++..++ +..+.|.+.++       .. +.|+
T Consensus       103 ~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI---~~~~Vt~L~~e~-g~V~GV~t~dG-------~~-i~Ad  170 (637)
T 2zxi_A          103 KMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYI---KQEEVVDIIVKN-NQVVGVRTNLG-------VE-YKTK  170 (637)
T ss_dssp             EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEE---EESCEEEEEESS-SBEEEEEETTS-------CE-EECS
T ss_pred             eecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEE---EEeEEEEEEecC-CEEEEEEECCC-------cE-EEeC
Confidence            0000   00000  01235677888888888774 6542   567899987754 23345666553       57 8999


Q ss_pred             EEEEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEee
Q 022090          140 FLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR  217 (303)
Q Consensus       140 ~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r  217 (303)
                      .||+|||.  .+..+.++|...+      .                +.+   +| +.++.+++..|.+.|.+++.+.+
T Consensus       171 aVVLATG~--~s~~~~~~G~~~~------~----------------~Gr---~G-~~~A~~la~~L~~lG~~v~~l~t  220 (637)
T 2zxi_A          171 AVVVTTGT--FLNGVIYIGDKMI------P----------------GGR---LG-EPRSEGLSDFYRRFDFPLIRFKT  220 (637)
T ss_dssp             EEEECCTT--CBTCEEEETTEEE------E----------------CSB---TT-BCCBCTHHHHHHHTTCCCEEEEE
T ss_pred             EEEEccCC--CccCceeccceec------C----------------CCC---CC-chhHHHHHHHHHhcCCceEEecC
Confidence            99999994  4444556665543      1                112   23 57889999999999999877754

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.25  E-value=3.8e-11  Score=108.41  Aligned_cols=60  Identities=5%  Similarity=0.037  Sum_probs=47.9

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCe---EEEEEEEeCCCCeEE-EEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQR---SVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~---~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      +...+...+.+.+++.|+.+  ++++   +|+++..++  +.+. |.+.++       .+ +.||.||+|+|.++.
T Consensus       159 ~~~~~~~~L~~~a~~~Gv~i--~~~t~~~~V~~i~~~~--~~v~gV~t~~G-------~~-i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          159 HARNALVAAAREAQRMGVKF--VTGTPQGRVVTLIFEN--NDVKGAVTADG-------KI-WRAERTFLCAGASAG  222 (438)
T ss_dssp             CHHHHHHHHHHHHHHTTCEE--EESTTTTCEEEEEEET--TEEEEEEETTT-------EE-EECSEEEECCGGGGG
T ss_pred             cHHHHHHHHHHHHHhcCCEE--EeCCcCceEEEEEecC--CeEEEEEECCC-------CE-EECCEEEECCCCChh
Confidence            35678888888888888665  8998   999998865  5676 777654       57 899999999997654

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.25  E-value=8.6e-11  Score=109.17  Aligned_cols=134  Identities=14%  Similarity=0.208  Sum_probs=86.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC------------------------CCC---c-eEEec
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY------------------------SYD---R-LRLHL   58 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~------------------------~~~---~-~~~~~   58 (303)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+..+...+..                        ...   . .....
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~  105 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTR  105 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEecc
Confidence            4699999999999999999999999999999987654221110                        000   0 11110


Q ss_pred             --CcccccCCC--CCC------CCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCC
Q 022090           59 --AKQFCQLPH--LPF------PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSP  128 (303)
Q Consensus        59 --~~~~~~~~~--~~~------~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~  128 (303)
                        ...+..+..  ...      ........++..+.++|.+.+++.     ++++++|++++.++  +.+++++.+..++
T Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-----v~~~~~v~~~~~~~--~~v~v~~~~~~~G  178 (549)
T 2r0c_A          106 VGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER-----LRTRSRLDSFEQRD--DHVRATITDLRTG  178 (549)
T ss_dssp             BTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG-----EECSEEEEEEEECS--SCEEEEEEETTTC
T ss_pred             CCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh-----cccCcEEEEEEEeC--CEEEEEEEECCCC
Confidence              001111110  000      000112346778888888888765     59999999998866  5578877762221


Q ss_pred             CceeEEEEeeCEEEEccCCCCC
Q 022090          129 GREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       129 ~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                        +..+ +++|+||.|+|.+|.
T Consensus       179 --~~~~-i~a~~vVgADG~~S~  197 (549)
T 2r0c_A          179 --ATRA-VHARYLVACDGASSP  197 (549)
T ss_dssp             --CEEE-EEEEEEEECCCTTCH
T ss_pred             --CEEE-EEeCEEEECCCCCcH
Confidence              2357 899999999998763

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.25  E-value=9.4e-11  Score=110.79  Aligned_cols=141  Identities=18%  Similarity=0.226  Sum_probs=89.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhh-CCCCeEEEecCCCCCCccCcC--------------C----------CCceEEecC-
Q 022090            6 AGVEVIMVGAGTSGLATAACLSL-QSIPYVILERENCYASIWKKY--------------S----------YDRLRLHLA-   59 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~-~g~~v~iie~~~~~gg~w~~~--------------~----------~~~~~~~~~-   59 (303)
                      ..+||+|||||++|+++|..|++ .|++|+|+|+.+..+...+..              .          ...+....+ 
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~  110 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPD  110 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEEC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCC
Confidence            45799999999999999999999 999999999987544221110              0          011111110 


Q ss_pred             ----cccc---cCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCC--CCeEEEEEee----
Q 022090           60 ----KQFC---QLPHLPFP--SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA--TNMWNVKASN----  124 (303)
Q Consensus        60 ----~~~~---~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~--~~~~~v~~~~----  124 (303)
                          ..+.   .++.....  .......++..+.++|.+.+.+.+....++++++|++++.+++  ...++|++.+    
T Consensus       111 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~  190 (639)
T 2dkh_A          111 PGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAA  190 (639)
T ss_dssp             TTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGG
T ss_pred             CCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEecccc
Confidence                0000   00000000  0011235688999999999998876223499999999988752  2357777764    


Q ss_pred             cCCCCceeEEEEeeCEEEEccCCCCC
Q 022090          125 LLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       125 ~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      ..+   +..+ +++|+||.|+|.+|.
T Consensus       191 ~~G---~~~~-i~a~~vVgADG~~S~  212 (639)
T 2dkh_A          191 HAG---QIET-VQARYVVGCDGARSN  212 (639)
T ss_dssp             GTT---CEEE-EEEEEEEECCCTTCH
T ss_pred             CCC---CeEE-EEeCEEEECCCcchH
Confidence            111   2257 899999999998763

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.24  E-value=1.6e-11  Score=111.33  Aligned_cols=134  Identities=17%  Similarity=0.239  Sum_probs=85.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC--CCCceEEe-c----------Cccc-----ccCC--
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--SYDRLRLH-L----------AKQF-----CQLP--   66 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~--~~~~~~~~-~----------~~~~-----~~~~--   66 (303)
                      .+||+|||||++|+++|..|++.|.+|+|+|+.+..|+.....  ....+... .          ...+     ..+.  
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE  105 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHH
Confidence            4799999999999999999999999999999988766421100  00000000 0          0000     0000  


Q ss_pred             ---------CCCCC--C---CCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCcee
Q 022090           67 ---------HLPFP--S---SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI  132 (303)
Q Consensus        67 ---------~~~~~--~---~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~  132 (303)
                               ..++.  .   .++.......+.+.+.+.+++.+++.  +++++|+++..++ +..|.|.+.++       
T Consensus       106 ~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i--~~~~~V~~i~~~~-~~v~~V~~~~G-------  175 (447)
T 2i0z_A          106 DIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKI--RTNTPVETIEYEN-GQTKAVILQTG-------  175 (447)
T ss_dssp             HHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEE--ECSCCEEEEEEET-TEEEEEEETTC-------
T ss_pred             HHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEE--EeCcEEEEEEecC-CcEEEEEECCC-------
Confidence                     00000  0   00111145788888888888888655  9999999998764 22377877653       


Q ss_pred             EEEEeeCEEEEccCCCCCC
Q 022090          133 EEYYSGRFLVVASGETTNP  151 (303)
Q Consensus       133 ~~~~~ad~vIlAtG~~~~p  151 (303)
                      .+ +.+|.||+|||.++.|
T Consensus       176 ~~-i~Ad~VVlAtGg~s~~  193 (447)
T 2i0z_A          176 EV-LETNHVVIAVGGKSVP  193 (447)
T ss_dssp             CE-EECSCEEECCCCSSSG
T ss_pred             CE-EECCEEEECCCCCcCC
Confidence            46 8999999999987643

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.23  E-value=5.8e-11  Score=110.90  Aligned_cols=135  Identities=15%  Similarity=0.132  Sum_probs=87.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC------------------ccCc---CCC---CceEEecCcc-
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------------------IWKK---YSY---DRLRLHLAKQ-   61 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg------------------~w~~---~~~---~~~~~~~~~~-   61 (303)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+..+.                  .|..   ..+   .......... 
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  102 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ  102 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence            57999999999999999999999999999999854321                  1100   000   0000000000 


Q ss_pred             ---cccCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090           62 ---FCQLPHLP---FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY  135 (303)
Q Consensus        62 ---~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  135 (303)
                         ...+....   +........++..+...|.+.+++.|+..  +++++|+++..++ +..+.|.+.+++    +..+ 
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i--~~g~~V~~v~~~~-g~~~~V~~~~~G----~~~~-  174 (591)
T 3i3l_A          103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITV--HEETPVTDVDLSD-PDRVVLTVRRGG----ESVT-  174 (591)
T ss_dssp             CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEE--ETTCCEEEEECCS-TTCEEEEEEETT----EEEE-
T ss_pred             ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEE--EeCCEEEEEEEcC-CCEEEEEEecCC----ceEE-
Confidence               00011000   00111123578899999999998888665  8999999998753 356888887421    3357 


Q ss_pred             EeeCEEEEccCCCC
Q 022090          136 YSGRFLVVASGETT  149 (303)
Q Consensus       136 ~~ad~vIlAtG~~~  149 (303)
                      +.+|.||.|+|.++
T Consensus       175 i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          175 VESDFVIDAGGSGG  188 (591)
T ss_dssp             EEESEEEECCGGGC
T ss_pred             EEcCEEEECCCCcc
Confidence            89999999999755

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.22  E-value=8.7e-11  Score=99.95  Aligned_cols=136  Identities=15%  Similarity=0.174  Sum_probs=80.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC-CCCeEEEecCCCCCC-ccCcC-CCCceEEecCc-ccccCCCCCCCCCCCC--CCCH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYAS-IWKKY-SYDRLRLHLAK-QFCQLPHLPFPSSYPM--FVSR   80 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~-g~~v~iie~~~~~gg-~w~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~   80 (303)
                      .+||+|||||++|+++|..|++. |.+|+|+|+.+.+|+ .|... .+..+....+. .+..-...++......  ..+.
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  118 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA  118 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCH
Confidence            46999999999999999999997 999999999987765 45322 12222221110 0000000111100000  1145


Q ss_pred             HHHHHHHHHHHHH-cCCCceeEeCeEEEEEEEeCCCCeEEEEEee---------cCCCCceeEEEEeeCEEEEccCCC
Q 022090           81 AQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASN---------LLSPGREIEEYYSGRFLVVASGET  148 (303)
Q Consensus        81 ~~l~~~l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~---------~~~~~~~~~~~~~ad~vIlAtG~~  148 (303)
                      .++...+.+.+.+ .+++.  +++++|+++..++ .....|.+..         +..+  +... +.+|.||+|+|..
T Consensus       119 ~~~~~~l~~~~~~~~gv~i--~~~~~V~~i~~~~-~~v~gv~~~~~~~~~~~~~g~~g--~~~~-i~ad~VV~AtG~~  190 (284)
T 1rp0_A          119 ALFTSTIMSKLLARPNVKL--FNAVAAEDLIVKG-NRVGGVVTNWALVAQNHHTQSCM--DPNV-MEAKIVVSSCGHD  190 (284)
T ss_dssp             HHHHHHHHHHHHTSTTEEE--EETEEEEEEEEET-TEEEEEEEEEHHHHTCTTTSSCC--CCEE-EEEEEEEECCCSS
T ss_pred             HHHHHHHHHHHHhcCCCEE--EcCcEEEEEEecC-CeEEEEEEeccccccccCccccC--ceEE-EECCEEEECCCCc
Confidence            6677777666654 46544  8999999998765 1222344431         1001  2257 8999999999953

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.22  E-value=7e-11  Score=105.35  Aligned_cols=126  Identities=16%  Similarity=0.099  Sum_probs=80.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC----CC-ccCc----------CCC--------CceEEecC--c
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----AS-IWKK----------YSY--------DRLRLHLA--K   60 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~----gg-~w~~----------~~~--------~~~~~~~~--~   60 (303)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.+..    |+ .+..          ...        ........  .
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g   83 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG   83 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCC
Confidence            4579999999999999999999999999999998653    11 1000          000        00000000  0


Q ss_pred             ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCE
Q 022090           61 QFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRF  140 (303)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~  140 (303)
                      ...  ...+.+   .....+..+.+.+.+.+  .++.  ++++++|++++.++  +.++|++.++       .+ +.+|.
T Consensus        84 ~~~--~~~~~~---~~~~~~~~l~~~L~~~~--~~~~--i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~ad~  144 (397)
T 2vou_A           84 ERV--GSVPAD---WRFTSYDSIYGGLYELF--GPER--YHTSKCLVGLSQDS--ETVQMRFSDG-------TK-AEANW  144 (397)
T ss_dssp             CEE--EEEECC---CCEEEHHHHHHHHHHHH--CSTT--EETTCCEEEEEECS--SCEEEEETTS-------CE-EEESE
T ss_pred             Ccc--ccccCc---ccccCHHHHHHHHHHhC--CCcE--EEcCCEEEEEEecC--CEEEEEECCC-------CE-EECCE
Confidence            000  000000   11234567777776664  2444  49999999998865  5688888764       46 89999


Q ss_pred             EEEccCCCCC
Q 022090          141 LVVASGETTN  150 (303)
Q Consensus       141 vIlAtG~~~~  150 (303)
                      ||.|+|.+|.
T Consensus       145 vV~AdG~~S~  154 (397)
T 2vou_A          145 VIGADGGASV  154 (397)
T ss_dssp             EEECCCTTCH
T ss_pred             EEECCCcchh
Confidence            9999998664

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.22  E-value=1.2e-10  Score=107.31  Aligned_cols=132  Identities=21%  Similarity=0.319  Sum_probs=82.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC-------CccCcCCCCc---eEEe--------cCcccccCC--
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-------SIWKKYSYDR---LRLH--------LAKQFCQLP--   66 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g-------g~w~~~~~~~---~~~~--------~~~~~~~~~--   66 (303)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+.++       +.|....+..   ....        .......+.  
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            4799999999999999999999999999999987552       2232210000   0000        000000000  


Q ss_pred             ------------CCCCCC--CCCCCC-----CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCC
Q 022090           67 ------------HLPFPS--SYPMFV-----SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS  127 (303)
Q Consensus        67 ------------~~~~~~--~~~~~~-----~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~  127 (303)
                                  .+..+.  .+...+     ....+.+.+.+.+++.++++  +++++|+++..++ +..+.|.+.++  
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I--~~~t~V~~I~~~~-~~v~gV~l~~G--  261 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEI--RFSTRVDDLHMED-GQITGVTLSNG--  261 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEE--ESSCCEEEEEESS-SBEEEEEETTS--
T ss_pred             cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEE--EeCCEEEEEEEeC-CEEEEEEECCC--
Confidence                        000000  000011     13567778888888888665  9999999998765 23455777654  


Q ss_pred             CCceeEEEEeeCEEEEccCCCC
Q 022090          128 PGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus       128 ~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                           .+ +.||.||+|+|.++
T Consensus       262 -----~~-i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          262 -----EE-IKSRHVVLAVGHSA  277 (549)
T ss_dssp             -----CE-EECSCEEECCCTTC
T ss_pred             -----CE-EECCEEEECCCCCh
Confidence                 57 89999999999765

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.21  E-value=1.3e-13  Score=124.32  Aligned_cols=114  Identities=21%  Similarity=0.269  Sum_probs=69.3

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ++|+|||||++|+++|..|++.+  .+|+|||+++...       |..........               ..+.+++..
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~-------~~p~l~~v~~g---------------~~~~~~i~~   60 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG-------FTPAFPHLAMG---------------WRKFEDISV   60 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE-------CGGGHHHHHHT---------------CSCGGGSEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc-------cCccHHHHhcC---------------CCCHHHhhh
Confidence            48999999999999999999875  7899999987421       10000000000               000001111


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccc
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS  161 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~  161 (303)
                      .+.+.+++.+++   ....+|++|+.+.    .+|++.++       ++ +.||+||+|||  +.+. +++||.+.
T Consensus        61 ~~~~~~~~~gv~---~i~~~v~~Id~~~----~~V~~~~g-------~~-i~YD~LViAtG--~~~~-~~i~G~~e  118 (430)
T 3hyw_A           61 PLAPLLPKFNIE---FINEKAESIDPDA----NTVTTQSG-------KK-IEYDYLVIATG--PKLV-FGAEGQEE  118 (430)
T ss_dssp             ESTTTGGGGTEE---EECSCEEEEETTT----TEEEETTC-------CE-EECSEEEECCC--CEEE-CCSBTHHH
T ss_pred             cHHHHHHHCCcE---EEEeEEEEEECCC----CEEEECCC-------CE-EECCEEEEeCC--CCcc-CCccCccc
Confidence            112223334544   2355788887665    46777765       57 89999999999  5443 45787654

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.21  E-value=1.8e-11  Score=109.05  Aligned_cols=134  Identities=16%  Similarity=0.097  Sum_probs=83.4

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC------C-C-ccCc--------CC----------CCceEEecCcc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY------A-S-IWKK--------YS----------YDRLRLHLAKQ   61 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~------g-g-~w~~--------~~----------~~~~~~~~~~~   61 (303)
                      +||+|||||++|+++|..|++.|++|+|+|+.+..      + | .+..        ..          +..+.......
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence            69999999999999999999999999999997631      1 1 1110        00          11111111110


Q ss_pred             cccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEE-eecCCCCceeEEEEeeC
Q 022090           62 FCQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA-SNLLSPGREIEEYYSGR  139 (303)
Q Consensus        62 ~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~-~~~~~~~~~~~~~~~ad  139 (303)
                      ...+...... .......++..+.+.+.+.+...++..  +++++|+++..++ ++.+.|++ .++     +..+ +++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i--~~~~~v~~i~~~~-~~~~~v~~~~~g-----~~~~-~~a~  153 (394)
T 1k0i_A           83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATT--VYQAAEVRLHDLQ-GERPYVTFERDG-----ERLR-LDCD  153 (394)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEE--ESSCEEEEEECTT-SSSCEEEEEETT-----EEEE-EECS
T ss_pred             eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeE--EeceeEEEEEEec-CCceEEEEecCC-----cEEE-EEeC
Confidence            0000000000 001112356778888888877777554  9999999997653 23577777 443     2237 8999


Q ss_pred             EEEEccCCCCC
Q 022090          140 FLVVASGETTN  150 (303)
Q Consensus       140 ~vIlAtG~~~~  150 (303)
                      .||.|+|.+|.
T Consensus       154 ~vV~AdG~~S~  164 (394)
T 1k0i_A          154 YIAGCDGFHGI  164 (394)
T ss_dssp             EEEECCCTTCS
T ss_pred             EEEECCCCCcH
Confidence            99999998765

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.21  E-value=3.2e-11  Score=107.53  Aligned_cols=132  Identities=14%  Similarity=0.121  Sum_probs=85.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC-------------------ccCc-----CCCCceEEecC-c-
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-------------------IWKK-----YSYDRLRLHLA-K-   60 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg-------------------~w~~-----~~~~~~~~~~~-~-   60 (303)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+....                   .|..     .....+..... . 
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~   85 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGE   85 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCC
Confidence            47999999999999999999999999999999865411                   0000     00001111100 0 


Q ss_pred             ccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeE--EEEEeecCCCCceeEEEE
Q 022090           61 QFCQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMW--NVKASNLLSPGREIEEYY  136 (303)
Q Consensus        61 ~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~--~v~~~~~~~~~~~~~~~~  136 (303)
                      ....+...... ..+....++..+.+.|.+.+++. ++++  +++++|++++.++  +.+  .|++.++       .+ +
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i--~~~~~v~~i~~~~--~~v~g~v~~~~g-------~~-~  153 (399)
T 2x3n_A           86 LLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEM--LFETRIEAVQRDE--RHAIDQVRLNDG-------RV-L  153 (399)
T ss_dssp             EEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEE--ECSCCEEEEEECT--TSCEEEEEETTS-------CE-E
T ss_pred             EEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEE--EcCCEEEEEEEcC--CceEEEEEECCC-------CE-E
Confidence            01011100000 01112357889999999988876 6554  8999999998865  456  7777654       46 8


Q ss_pred             eeCEEEEccCCCCC
Q 022090          137 SGRFLVVASGETTN  150 (303)
Q Consensus       137 ~ad~vIlAtG~~~~  150 (303)
                      ++|.||.|+|.++.
T Consensus       154 ~ad~vV~AdG~~s~  167 (399)
T 2x3n_A          154 RPRVVVGADGIASY  167 (399)
T ss_dssp             EEEEEEECCCTTCH
T ss_pred             ECCEEEECCCCChH
Confidence            99999999997663

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.21  E-value=2.8e-10  Score=106.27  Aligned_cols=136  Identities=14%  Similarity=0.125  Sum_probs=86.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEE------------ecCc--------------
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRL------------HLAK--------------   60 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~------------~~~~--------------   60 (303)
                      .+||+|||||++|+++|..|+++|.+|+|+|+.+..||...... -.+..            ....              
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~-gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~  204 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAA-GGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIN  204 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCC-SCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcC-ceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence            57999999999999999999999999999999998876432210 00000            0000              


Q ss_pred             -----------------ccccCCCCCCC-----C--CCC-------CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEE
Q 022090           61 -----------------QFCQLPHLPFP-----S--SYP-------MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESA  109 (303)
Q Consensus        61 -----------------~~~~~~~~~~~-----~--~~~-------~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i  109 (303)
                                       .+.. ...++.     .  .++       .......+...|.+.+++.++++  +++++|+++
T Consensus       205 ~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i--~~~~~v~~l  281 (571)
T 1y0p_A          205 DPALVKVLSSHSKDSVDWMTA-MGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDL--RMNTRGIEV  281 (571)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH-TTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEE--ESSEEEEEE
T ss_pred             CHHHHHHHHHccHHHHHHHHh-cCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEE--EeCCEeeEe
Confidence                             0000 000110     0  000       01235688889999888888665  999999999


Q ss_pred             EEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090          110 SYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      ..++++..+.|...+.. +  +..+ +.++.||+|||.++.
T Consensus       282 ~~~~~g~v~Gv~~~~~~-g--~~~~-i~a~~VVlAtGg~~~  318 (571)
T 1y0p_A          282 LKDDKGTVKGILVKGMY-K--GYYW-VKADAVILATGGFAK  318 (571)
T ss_dssp             EECTTSCEEEEEEEETT-T--EEEE-EECSEEEECCCCCTT
T ss_pred             EEcCCCeEEEEEEEeCC-C--cEEE-EECCeEEEeCCCccc
Confidence            87642333445554311 1  3347 899999999997653

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.20  E-value=3e-10  Score=101.65  Aligned_cols=137  Identities=18%  Similarity=0.166  Sum_probs=84.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCC-eEEEecCCCCCCccCc--------------CC----------CCceEEecCc-
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKK--------------YS----------YDRLRLHLAK-   60 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~~~~gg~w~~--------------~~----------~~~~~~~~~~-   60 (303)
                      .+||+|||||++|+++|..|++.|++ |+|+|+.+..+.....              ..          ...+...... 
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g   83 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   83 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence            47999999999999999999999999 9999998765421110              00          0001111000 


Q ss_pred             -ccccCCCC-CCCCCCC-CCCCHHHHHHHHHHHHHH-cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEE
Q 022090           61 -QFCQLPHL-PFPSSYP-MFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY  136 (303)
Q Consensus        61 -~~~~~~~~-~~~~~~~-~~~~~~~l~~~l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~  136 (303)
                       .....+.. ......+ ...++..+.++|.+.+.+ .+. ..++++++|++++. +  +.++|.+.+..++  +..+ +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~-~~v~~~~~v~~i~~-~--~~v~v~~~~~~~g--~~~~-~  156 (410)
T 3c96_A           84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQ-QAVRTGLGVERIEE-R--DGRVLIGARDGHG--KPQA-L  156 (410)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCT-TSEEESEEEEEEEE-E--TTEEEEEEEETTS--CEEE-E
T ss_pred             CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCC-cEEEECCEEEEEec-C--CccEEEEecCCCC--CceE-E
Confidence             00000000 0000111 234678899999888775 353 13499999999987 4  4577877651111  2257 8


Q ss_pred             eeCEEEEccCCCCC
Q 022090          137 SGRFLVVASGETTN  150 (303)
Q Consensus       137 ~ad~vIlAtG~~~~  150 (303)
                      ++|.||.|+|.+|.
T Consensus       157 ~ad~vV~AdG~~S~  170 (410)
T 3c96_A          157 GADVLVGADGIHSA  170 (410)
T ss_dssp             EESEEEECCCTTCH
T ss_pred             ecCEEEECCCccch
Confidence            99999999998764

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.20  E-value=8.7e-11  Score=103.19  Aligned_cols=62  Identities=10%  Similarity=0.052  Sum_probs=48.3

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      +...+...+.+.+++.|+++  +++++|+++..++ ++.|.|.+.++     +..+ +.||.||+|+|.++
T Consensus       148 ~~~~~~~~l~~~~~~~Gv~i--~~~~~v~~i~~~~-~~~~~v~~~~g-----~~~~-~~a~~VV~A~G~~s  209 (369)
T 3dme_A          148 DSHALMLAYQGDAESDGAQL--VFHTPLIAGRVRP-EGGFELDFGGA-----EPMT-LSCRVLINAAGLHA  209 (369)
T ss_dssp             CHHHHHHHHHHHHHHTTCEE--ECSCCEEEEEECT-TSSEEEEECTT-----SCEE-EEEEEEEECCGGGH
T ss_pred             CHHHHHHHHHHHHHHCCCEE--ECCCEEEEEEEcC-CceEEEEECCC-----ceeE-EEeCEEEECCCcch
Confidence            45678888888888888665  8899999998865 23488877654     2257 89999999999755

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.18  E-value=9.9e-11  Score=109.02  Aligned_cols=169  Identities=16%  Similarity=0.117  Sum_probs=102.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC-CCCCccCcCCCCceEEec-----------Cc--------ccccC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKKYSYDRLRLHL-----------AK--------QFCQL   65 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~-~~gg~w~~~~~~~~~~~~-----------~~--------~~~~~   65 (303)
                      ..+||+|||||++|+++|..|++.|.+|+|+|+.. .+|+.+..   +......           ..        ....+
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~---ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f   96 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCN---PAIGGVAKGQITREIDALGGEMGKAIDATGIQF   96 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSC---SEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccc---cchhhhhHHHHHHHHHhcccHHHHHHHhcCCch
Confidence            35899999999999999999999999999999974 45543221   1111000           00        00000


Q ss_pred             CC---CCCCCCC--CCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEE-EEEeecCCCCceeEEEEee
Q 022090           66 PH---LPFPSSY--PMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSG  138 (303)
Q Consensus        66 ~~---~~~~~~~--~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~a  138 (303)
                      ..   ...+...  ....++..+...+.+.++++ ++..   ++..|+.+..++  +.+. |.+.++       .. +.|
T Consensus        97 ~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I---~~~~V~~L~~d~--g~V~GV~t~~G-------~~-i~A  163 (641)
T 3cp8_A           97 RMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDL---LQDTVIGVSANS--GKFSSVTVRSG-------RA-IQA  163 (641)
T ss_dssp             EEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEE---EECCEEEEEEET--TEEEEEEETTS-------CE-EEE
T ss_pred             hhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEE---EeeEEEEEEecC--CEEEEEEECCC-------cE-EEe
Confidence            00   0000000  01245668888888888775 6543   456888887765  3333 665543       47 899


Q ss_pred             CEEEEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEee
Q 022090          139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR  217 (303)
Q Consensus       139 d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r  217 (303)
                      +.||+|||.++  ..+.++|...+      .+                .++  +| +.++++++..|.+.|.+|+.+..
T Consensus       164 d~VVLATG~~s--~~~i~~G~~~~------~~----------------g~~--vG-~~~a~~la~~L~~~G~kv~~l~t  215 (641)
T 3cp8_A          164 KAAILACGTFL--NGLIHIGMDHF------PG----------------GRS--TA-EPPVEGLTESLASLGFSFGRLKT  215 (641)
T ss_dssp             EEEEECCTTCB--TCEEEETTEEE------EC----------------SSS--TT-SCCBCSHHHHHHHTTCCEEEEEE
T ss_pred             CEEEECcCCCC--Cccceeeeeee------cc----------------ccc--cC-CchhhhhHHHHHhCCceEEeecC
Confidence            99999999543  32233333322      00                111  13 57888999999999999876643

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.18  E-value=8.4e-11  Score=106.70  Aligned_cols=135  Identities=10%  Similarity=0.078  Sum_probs=84.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC--CCccCcC-----------CCC----ceEEecCcccccC-CC-
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY--ASIWKKY-----------SYD----RLRLHLAKQFCQL-PH-   67 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~--gg~w~~~-----------~~~----~~~~~~~~~~~~~-~~-   67 (303)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+..  |..+...           ...    ...... .....+ +. 
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~-~~~~~~~~~~   84 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKI-NGIKLYSPDM   84 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEE-EEEEEECTTS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhh-cceEEECCCC
Confidence            479999999999999999999999999999998753  2222110           000    000000 000000 00 


Q ss_pred             ---CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEE-EEEeecCCCCceeEEEEeeCEEEE
Q 022090           68 ---LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVV  143 (303)
Q Consensus        68 ---~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIl  143 (303)
                         .+++. .....++..+.+.|.+.+.+.+++.  +++++|+++..++  +.+. |.+.+..++  +..+ +++|.||.
T Consensus        85 ~~~~~~~~-~~~~i~r~~l~~~L~~~a~~~gv~i--~~~~~v~~i~~~~--~~v~gv~~~~~~~G--~~~~-~~ad~VV~  156 (453)
T 3atr_A           85 QTVWTVNG-EGFELNAPLYNQRVLKEAQDRGVEI--WDLTTAMKPIFED--GYVKGAVLFNRRTN--EELT-VYSKVVVE  156 (453)
T ss_dssp             SCEEEEEE-EEEEECHHHHHHHHHHHHHHTTCEE--ESSEEEEEEEEET--TEEEEEEEEETTTT--EEEE-EECSEEEE
T ss_pred             ceEEeECC-CcEEEcHHHHHHHHHHHHHHcCCEE--EeCcEEEEEEEEC--CEEEEEEEEEcCCC--ceEE-EEcCEEEE
Confidence               00000 0122467889999999888877655  9999999998765  4433 555432011  2247 89999999


Q ss_pred             ccCCCCC
Q 022090          144 ASGETTN  150 (303)
Q Consensus       144 AtG~~~~  150 (303)
                      |+|.++.
T Consensus       157 AdG~~s~  163 (453)
T 3atr_A          157 ATGYSRS  163 (453)
T ss_dssp             CCGGGCT
T ss_pred             CcCCchh
Confidence            9997664

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.17  E-value=1.2e-10  Score=103.81  Aligned_cols=129  Identities=19%  Similarity=0.217  Sum_probs=75.5

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc--------cCc--------CCCC--------------ceEEe
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI--------WKK--------YSYD--------------RLRLH   57 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~--------w~~--------~~~~--------------~~~~~   57 (303)
                      .+|+|||||++||++|..|+++|++|+||||++.....        +..        ...+              .....
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~   81 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFY   81 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEe
Confidence            48999999999999999999999999999997643210        000        0000              00000


Q ss_pred             -cCcccccCCC--CCCCCCCC----CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCc
Q 022090           58 -LAKQFCQLPH--LPFPSSYP----MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR  130 (303)
Q Consensus        58 -~~~~~~~~~~--~~~~~~~~----~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~  130 (303)
                       ..........  .+......    ....+..+.+.|.+.     +...+++++++++++..+ ++..+|++.++     
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~-----~~~~v~~~~~v~~~~~~~-~~~v~v~~~dG-----  150 (412)
T 4hb9_A           82 NERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKG-----LANTIQWNKTFVRYEHIE-NGGIKIFFADG-----  150 (412)
T ss_dssp             CTTSCEEEC--------------CEEEEEHHHHHHHHHTT-----CTTTEECSCCEEEEEECT-TSCEEEEETTS-----
T ss_pred             cCCcceecccCCccccccccccccceEeeHHHHHHHHHhh-----ccceEEEEEEEEeeeEcC-CCeEEEEECCC-----
Confidence             0000000000  00000000    012345555544332     233469999999998765 34678888775     


Q ss_pred             eeEEEEeeCEEEEccCCCCC
Q 022090          131 EIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       131 ~~~~~~~ad~vIlAtG~~~~  150 (303)
                        .+ +++|.||.|+|.+|.
T Consensus       151 --~~-~~adlvVgADG~~S~  167 (412)
T 4hb9_A          151 --SH-ENVDVLVGADGSNSK  167 (412)
T ss_dssp             --CE-EEESEEEECCCTTCH
T ss_pred             --CE-EEeeEEEECCCCCcc
Confidence              56 899999999998773

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.17  E-value=1.4e-10  Score=102.35  Aligned_cols=62  Identities=13%  Similarity=0.215  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        80 ~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      ...+...+.+.+++.++..  +++++|+++..++  +.|.|.+.+        .+ +.+|.||+|+|.++....+
T Consensus       148 ~~~l~~~l~~~~~~~G~~i--~~~~~V~~i~~~~--~~~~v~~~~--------g~-~~a~~vV~a~G~~s~~l~~  209 (372)
T 2uzz_A          148 SELAIKTWIQLAKEAGCAQ--LFNCPVTAIRHDD--DGVTIETAD--------GE-YQAKKAIVCAGTWVKDLLP  209 (372)
T ss_dssp             HHHHHHHHHHHHHHTTCEE--ECSCCEEEEEECS--SSEEEEESS--------CE-EEEEEEEECCGGGGGGTST
T ss_pred             HHHHHHHHHHHHHHCCCEE--EcCCEEEEEEEcC--CEEEEEECC--------Ce-EEcCEEEEcCCccHHhhcc
Confidence            4578888888888888655  8899999998865  457776654        35 8999999999976543333

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.16  E-value=3.4e-10  Score=105.53  Aligned_cols=139  Identities=12%  Similarity=0.106  Sum_probs=86.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC------CCC----------ceEE------------e
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY------SYD----------RLRL------------H   57 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~------~~~----------~~~~------------~   57 (303)
                      ..+||+|||||++|+++|..|+++|.+|+|+|+.+..||.....      ...          ....            .
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~  199 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQN  199 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence            34799999999999999999999999999999998777632210      000          0000            0


Q ss_pred             cCc--------------cc----ccC------CCCCCCCCC---CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEE
Q 022090           58 LAK--------------QF----CQL------PHLPFPSSY---PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS  110 (303)
Q Consensus        58 ~~~--------------~~----~~~------~~~~~~~~~---~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~  110 (303)
                      .+.              .+    ..+      ....++...   ........+...|.+.+++.++++  +++++|+++.
T Consensus       200 ~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i--~~~~~v~~l~  277 (566)
T 1qo8_A          200 DIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDT--RLNSRVVKLV  277 (566)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCE--ECSEEEEEEE
T ss_pred             CHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEE--EeCCEEEEEE
Confidence            000              00    000      000111000   011336778899999998888766  9999999998


Q ss_pred             EeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090          111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      .++.+..+.|.+.+.. +  +... +.++.||+|||.++.
T Consensus       278 ~~~~g~v~Gv~~~~~~-g--~~~~-i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          278 VNDDHSVVGAVVHGKH-T--GYYM-IGAKSVVLATGGYGM  313 (566)
T ss_dssp             ECTTSBEEEEEEEETT-T--EEEE-EEEEEEEECCCCCTT
T ss_pred             ECCCCcEEEEEEEeCC-C--cEEE-EEcCEEEEecCCccc
Confidence            7642233345554311 1  3347 899999999998664

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.15  E-value=1.9e-10  Score=101.79  Aligned_cols=60  Identities=15%  Similarity=0.040  Sum_probs=46.5

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        77 ~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      ......+...+.+.+++.++..  +++++|+++..++  +.|.|.+.+        .+ +.+|.||+|+|.++
T Consensus       160 ~~~~~~~~~~l~~~~~~~g~~i--~~~~~v~~i~~~~--~~~~v~~~~--------g~-~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          160 HVEPYFVCKAYVKAAKMLGAEI--FEHTPVLHVERDG--EALFIKTPS--------GD-VWANHVVVASGVWS  219 (382)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEE--ETTCCCCEEECSS--SSEEEEETT--------EE-EEEEEEEECCGGGT
T ss_pred             EEcHHHHHHHHHHHHHHCCCEE--EcCCcEEEEEEEC--CEEEEEcCC--------ce-EEcCEEEECCChhH
Confidence            3456788899999888888655  8899999998755  557666543        46 89999999999754

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.14  E-value=2.2e-10  Score=109.07  Aligned_cols=59  Identities=14%  Similarity=0.250  Sum_probs=47.7

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      ....+...+.+.+++.|+.+  +++++|+++..++  +.|.|.+.++       .+ +.+|.||+|+|.++
T Consensus       415 ~p~~l~~aL~~~a~~~Gv~i--~~~t~V~~l~~~~--~~v~V~t~~G-------~~-i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          415 CPAELTRNVLELAQQQGLQI--YYQYQLQNFSRKD--DCWLLNFAGD-------QQ-ATHSVVVLANGHQI  473 (676)
T ss_dssp             CHHHHHHHHHHHHHHTTCEE--EESCCEEEEEEET--TEEEEEETTS-------CE-EEESEEEECCGGGG
T ss_pred             CHHHHHHHHHHHHHhCCCEE--EeCCeeeEEEEeC--CeEEEEECCC-------CE-EECCEEEECCCcch
Confidence            45678888888888888665  9999999999876  5688877654       46 89999999999754

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.13  E-value=7.4e-10  Score=104.96  Aligned_cols=139  Identities=16%  Similarity=0.223  Sum_probs=87.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhh-----CCCCeEEEecCCCCCC-------------------ccC----c-CCCCceEEe
Q 022090            7 GVEVIMVGAGTSGLATAACLSL-----QSIPYVILERENCYAS-------------------IWK----K-YSYDRLRLH   57 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~-----~g~~v~iie~~~~~gg-------------------~w~----~-~~~~~~~~~   57 (303)
                      .+||+|||||++||++|..|++     .|++|+|||+.+....                   .|.    . .....+...
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l~~~~~~~~~~~~~   87 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIALY   87 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHHHHhccccceEEEE
Confidence            5799999999999999999999     9999999998764321                   110    0 011122221


Q ss_pred             cCc---ccc---cCCCCCCC-CCC-CCCCCHHHHHHHHHHHHHHcC---CCceeEeCeEEEEEEEeC------CCCeEEE
Q 022090           58 LAK---QFC---QLPHLPFP-SSY-PMFVSRAQFIEHLDHYVSHFN---IGPSIRYQRSVESASYDE------ATNMWNV  120 (303)
Q Consensus        58 ~~~---~~~---~~~~~~~~-~~~-~~~~~~~~l~~~l~~~~~~~~---l~~~i~~~~~V~~i~~~~------~~~~~~v  120 (303)
                      .+.   .+.   .++..... ..+ ....++..+.++|.+.+.+.+   +.+  ++++++++++.++      +....++
T Consensus        88 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v--~~g~~v~~~~~d~~~~~~~~~~~V~v  165 (665)
T 1pn0_A           88 NPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKV--ERPLIPEKMEIDSSKAEDPEAYPVTM  165 (665)
T ss_dssp             EECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCE--ECSEEEEEEEECGGGTTCTTCCCEEE
T ss_pred             eCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEE--EeCCEEEEEEecCcccccCCCCCEEE
Confidence            111   000   01100000 011 123578889999999888776   555  9999999998864      1234667


Q ss_pred             EEeec---------------------------------------CCCCceeEEEEeeCEEEEccCCCCC
Q 022090          121 KASNL---------------------------------------LSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       121 ~~~~~---------------------------------------~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      ++.+.                                       ..+  +..+ +++|+||.|+|.+|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G--~~~~-i~A~~VVGADG~~S~  231 (665)
T 1pn0_A          166 TLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAG--EIET-VHCKYVIGCDGGHSW  231 (665)
T ss_dssp             EEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTT--CEEE-EEEEEEEECCCTTCH
T ss_pred             EEEecccccccccccccccccccccccccccccccccccccccCCCC--ceEE-EEeCEEEeccCCCCH
Confidence            66541                                       111  2357 899999999998763

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.13  E-value=3.1e-10  Score=98.12  Aligned_cols=104  Identities=20%  Similarity=0.282  Sum_probs=64.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCC-CccCcCC-CCceEEecCcccccCC--CCCCCC--CCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA-SIWKKYS-YDRLRLHLAKQFCQLP--HLPFPS--SYPMFV   78 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~g-g~w~~~~-~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~   78 (303)
                      .+||+|||||++|+++|..|+++  |.+|+|+|+....| ++|.... +...... +.....+.  ..++..  .+....
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~-~~~~~~L~~~Gv~~~~~G~~~~~~  157 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMR-KPADVFLDEVGVPYEDEGDYVVVK  157 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEE-TTTHHHHHHHTCCCEECSSEEEES
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcc-hHHHHHHHHcCCcccccCCeEEEe
Confidence            47999999999999999999997  99999999987665 5664432 2222222 11110000  011100  111112


Q ss_pred             CHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeC
Q 022090           79 SRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDE  113 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~  113 (303)
                      ...++.+.|.+.+... ++..  ++++.|+++..++
T Consensus       158 ~~~d~~~~L~~~a~~~~gV~i--~~~~~V~dLi~~~  191 (344)
T 3jsk_A          158 HAALFTSTVLSKVLQRPNVKL--FNATTVEDLITRK  191 (344)
T ss_dssp             CHHHHHHHHHHHHHTCTTEEE--EETEEEEEEEEEE
T ss_pred             cHHHHHHHHHHHHHhCCCCEE--EeCCEEEEEEecC
Confidence            3456667777776663 6544  8899998887654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.10  E-value=5.8e-10  Score=106.37  Aligned_cols=60  Identities=10%  Similarity=0.191  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeE-EEEeeCEEEEccCCCCC
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIE-EYYSGRFLVVASGETTN  150 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ad~vIlAtG~~~~  150 (303)
                      +...+...+.+.+++.|+.+  +++++|+++..++  +.|.|.+.++       . + +.+|.||+|+|.++.
T Consensus       410 ~p~~l~~aL~~~a~~~Gv~i--~~~t~V~~l~~~~--~~v~V~t~~G-------~~~-i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          410 CPSDLTHALMMLAQQNGMTC--HYQHELQRLKRID--SQWQLTFGQS-------QAA-KHHATVILATGHRLP  470 (689)
T ss_dssp             CHHHHHHHHHHHHHHTTCEE--EESCCEEEEEECS--SSEEEEEC-C-------CCC-EEESEEEECCGGGTT
T ss_pred             CHHHHHHHHHHHHHhCCCEE--EeCCeEeEEEEeC--CeEEEEeCCC-------cEE-EECCEEEECCCcchh
Confidence            45678888888888888665  9999999998876  4588887654       3 6 899999999997653

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.09  E-value=1.1e-09  Score=101.91  Aligned_cols=65  Identities=18%  Similarity=0.100  Sum_probs=48.1

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      +...+...+...+.+.|..+  +++++|+++..++ +..|.|.+.+..++  +..+ +.++.||+|+|.++
T Consensus       168 d~~~l~~~L~~~a~~~G~~i--~~~~~V~~l~~~~-g~v~gV~~~d~~tg--~~~~-i~A~~VV~AaG~~s  232 (561)
T 3da1_A          168 DDARLTLEIMKEAVARGAVA--LNYMKVESFIYDQ-GKVVGVVAKDRLTD--TTHT-IYAKKVVNAAGPWV  232 (561)
T ss_dssp             CHHHHHHHHHHHHHHTTCEE--EESEEEEEEEEET-TEEEEEEEEETTTC--CEEE-EEEEEEEECCGGGH
T ss_pred             cHHHHHHHHHHHHHHcCCEE--EcCCEEEEEEEcC-CeEEEEEEEEcCCC--ceEE-EECCEEEECCCcch
Confidence            45677778888888888765  8999999998865 23466777653222  3357 89999999999754

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.09  E-value=2.6e-09  Score=98.32  Aligned_cols=61  Identities=15%  Similarity=0.203  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeC-EEEEccCCCC
Q 022090           82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR-FLVVASGETT  149 (303)
Q Consensus        82 ~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad-~vIlAtG~~~  149 (303)
                      .+...|.+.+++.++++  +++++|+++..++++...-|...+..    +..+ +.++ .||+|||.++
T Consensus       203 ~l~~~L~~~~~~~Gv~i--~~~t~v~~L~~~~~g~v~GV~~~~~g----~~~~-i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRA--EYDMRVQTLVTDDTGRVVGIVAKQYG----KEVA-VRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEE--ECSEEEEEEEECTTCCEEEEEEEETT----EEEE-EEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEE--EecCEeEEEEECCCCcEEEEEEEECC----cEEE-EEeCCeEEEeCCChh
Confidence            78888988888888665  99999999988743344445555432    3357 8995 9999999766

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.09  E-value=7e-10  Score=101.09  Aligned_cols=193  Identities=12%  Similarity=0.065  Sum_probs=104.9

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc--cCcC----CC-C--ceEE--e--------------------
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI--WKKY----SY-D--RLRL--H--------------------   57 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~--w~~~----~~-~--~~~~--~--------------------   57 (303)
                      ||+|||||++|+++|..|++.|.+|+|+|+. ..+|.  |...    +. +  ....  .                    
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~   79 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS   79 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence            7999999999999999999999999999998 44443  1110    00 0  0000  0                    


Q ss_pred             -cCc---ccccCCCCCCCC--------CCC-----CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeE-E
Q 022090           58 -LAK---QFCQLPHLPFPS--------SYP-----MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-N  119 (303)
Q Consensus        58 -~~~---~~~~~~~~~~~~--------~~~-----~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~-~  119 (303)
                       .+.   .+..+ ..++..        .++     .......+...+.+.+++.+++.  ++++.| ++..++  +.. -
T Consensus        80 ~~~~~i~~l~~~-Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i--~~~~~v-~l~~~~--~~v~G  153 (472)
T 2e5v_A           80 EAKNVIETFESW-GFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPI--IEDRLV-EIRVKD--GKVTG  153 (472)
T ss_dssp             HHHHHHHHHHHT-TCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCE--ECCCEE-EEEEET--TEEEE
T ss_pred             HHHHHHHHHHHc-CCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEE--EECcEE-EEEEeC--CEEEE
Confidence             000   00000 001100        001     11234577788888777778766  889999 987764  322 2


Q ss_pred             EEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCC-CccccccCCCCCccEEecc-----cCCCCCCCCC-CeEEEE
Q 022090          120 VKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIR-GLCSFCSSATGTGEVIHST-----QYKNGKPYGG-KNVLVV  192 (303)
Q Consensus       120 v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~-g~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~-~~v~Vi  192 (303)
                      +...+. +     .+ +.+|.||+|||.++  ..+.+. +....      .|.-+...     ...+...... ..++++
T Consensus       154 v~v~~~-~-----g~-~~a~~VVlAtGg~~--~~~~~~~~~~~~------tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~  218 (472)
T 2e5v_A          154 FVTEKR-G-----LV-EDVDKLVLATGGYS--YLYEYSSTQSTN------IGDGMAIAFKAGTILADMEFVQFHPTVTSL  218 (472)
T ss_dssp             EEETTT-E-----EE-CCCSEEEECCCCCG--GGSSSBSSCTTC------SCHHHHHHHHTTCCEECTTCEEEEEEEECG
T ss_pred             EEEEeC-C-----Ce-EEeeeEEECCCCCc--ccCccccCCCCC------chHHHHHHHHcCCCEeCCcceEEEeEEEcc
Confidence            333221 1     45 78999999999544  333321 11111      22111100     0111111111 234556


Q ss_pred             CCCccHHHHHHHHhhccCceEEEeecCeeeeehhh
Q 022090          193 GSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM  227 (303)
Q Consensus       193 G~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~  227 (303)
                      |+|  +.+++..+...|..+ +..+.. ++++..+
T Consensus       219 ggg--~~~~ae~~~~~G~~~-v~~~g~-rf~~~~~  249 (472)
T 2e5v_A          219 DGE--VFLLTETLRGEGAQI-INENGE-RFLFNYD  249 (472)
T ss_dssp             GGC--CEECCTHHHHTTCEE-EETTCC-CGGGGTC
T ss_pred             CCC--ceeeehhhcCCceEE-ECCCCC-CCCccCC
Confidence            766  778888888888777 555555 6776543

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.08  E-value=1.2e-09  Score=96.75  Aligned_cols=59  Identities=10%  Similarity=0.006  Sum_probs=46.1

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEE-EEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        78 ~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      .+...+...+.+.+++.++..  +++++|+++..++  +.+. |.+.+        .+ +++|.||+|+|.++
T Consensus       146 ~~~~~l~~~l~~~~~~~Gv~i--~~~~~v~~i~~~~--~~v~gv~~~~--------g~-i~a~~VV~A~G~~s  205 (382)
T 1y56_B          146 ADPFEATTAFAVKAKEYGAKL--LEYTEVKGFLIEN--NEIKGVKTNK--------GI-IKTGIVVNATNAWA  205 (382)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEE--ECSCCEEEEEESS--SBEEEEEETT--------EE-EECSEEEECCGGGH
T ss_pred             ECHHHHHHHHHHHHHHCCCEE--ECCceEEEEEEEC--CEEEEEEECC--------cE-EECCEEEECcchhH
Confidence            356788888888888888665  8899999998765  5566 66643        36 89999999999754

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.07  E-value=3.5e-10  Score=99.90  Aligned_cols=58  Identities=12%  Similarity=0.114  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      +...+...+.+.+++.|..+  +++++|+++..++  +.|.|.+.+        .+ +.||.||+|+|.++
T Consensus       152 ~~~~~~~~l~~~a~~~Gv~i--~~~~~V~~i~~~~--~~~~V~t~~--------g~-i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          152 DTDALHQGYLRGIRRNQGQV--LCNHEALEIRRVD--GAWEVRCDA--------GS-YRAAVLVNAAGAWC  209 (381)
T ss_dssp             CHHHHHHHHHHHHHHTTCEE--ESSCCCCEEEEET--TEEEEECSS--------EE-EEESEEEECCGGGH
T ss_pred             CHHHHHHHHHHHHHHCCCEE--EcCCEEEEEEEeC--CeEEEEeCC--------CE-EEcCEEEECCChhH
Confidence            45778888888888888665  8899999998876  458777654        46 89999999999754

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.06  E-value=1.1e-09  Score=97.15  Aligned_cols=58  Identities=14%  Similarity=0.137  Sum_probs=45.4

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      +...+...+.+.+++.|+..  +++++|++++.++  +.|.|.+.+        .+ +.+|.||+|+|.++
T Consensus       148 ~~~~~~~~l~~~~~~~Gv~i--~~~~~v~~i~~~~--~~~~v~~~~--------g~-~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          148 FSENCIRAYRELAEARGAKV--LTHTRVEDFDISP--DSVKIETAN--------GS-YTADKLIVSMGAWN  205 (389)
T ss_dssp             EHHHHHHHHHHHHHHTTCEE--ECSCCEEEEEECS--SCEEEEETT--------EE-EEEEEEEECCGGGH
T ss_pred             eHHHHHHHHHHHHHHCCCEE--EcCcEEEEEEecC--CeEEEEeCC--------CE-EEeCEEEEecCccH
Confidence            34678888888888888665  8899999998865  457776643        46 89999999999654

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.06  E-value=9.2e-10  Score=97.96  Aligned_cols=56  Identities=16%  Similarity=0.083  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (303)
Q Consensus        80 ~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~  148 (303)
                      ...+...+.+.+++.++.+  +++++|+++..++  +.+.|.+.+        .+ +.+|.||+|+|.+
T Consensus       152 ~~~~~~~l~~~a~~~Gv~i--~~~~~V~~i~~~~--~~v~v~t~~--------g~-i~a~~VV~A~G~~  207 (397)
T 2oln_A          152 VRGTLAALFTLAQAAGATL--RAGETVTELVPDA--DGVSVTTDR--------GT-YRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHHHHHHHHHHTTCEE--EESCCEEEEEEET--TEEEEEESS--------CE-EEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHcCCEE--ECCCEEEEEEEcC--CeEEEEECC--------CE-EEcCEEEEcCCcC
Confidence            4567777778887778655  8999999998765  457776543        36 8999999999965

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.04  E-value=3.4e-09  Score=97.34  Aligned_cols=64  Identities=19%  Similarity=0.183  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      +...+...+.+.+.+.|...  +++++|+++..++  +.|.|.+.+..++  +..+ +.++.||+|+|.++
T Consensus       147 ~~~~l~~~l~~~a~~~Gv~i--~~~~~V~~l~~~~--~~~~V~~~d~~~G--~~~~-i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          147 DDARLVLANAQMVVRKGGEV--LTRTRATSARREN--GLWIVEAEDIDTG--KKYS-WQARGLVNATGPWV  210 (501)
T ss_dssp             CHHHHHHHHHHHHHHTTCEE--ECSEEEEEEEEET--TEEEEEEEETTTC--CEEE-EEESCEEECCGGGH
T ss_pred             cHHHHHHHHHHHHHHcCCEE--EcCcEEEEEEEeC--CEEEEEEEECCCC--CEEE-EECCEEEECCChhH
Confidence            45678888888888888665  8899999998875  6788887642222  2247 89999999999754

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.02  E-value=1.5e-09  Score=96.77  Aligned_cols=60  Identities=8%  Similarity=0.036  Sum_probs=45.6

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        78 ~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      .+...+...+.+.+++.+++.  +++++|+++..++ +..+.|.+.+        .+ +.+|.||+|+|.++
T Consensus       171 ~~~~~~~~~l~~~~~~~g~~i--~~~~~v~~i~~~~-~~~~~v~~~~--------g~-~~a~~vV~a~G~~s  230 (405)
T 2gag_B          171 AKHDHVAWAFARKANEMGVDI--IQNCEVTGFIKDG-EKVTGVKTTR--------GT-IHAGKVALAGAGHS  230 (405)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEE--ECSCCEEEEEESS-SBEEEEEETT--------CC-EEEEEEEECCGGGH
T ss_pred             CCHHHHHHHHHHHHHHCCCEE--EcCCeEEEEEEeC-CEEEEEEeCC--------ce-EECCEEEECCchhH
Confidence            345678888888888888665  8999999998764 3346676654        24 78999999999644

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.01  E-value=4.5e-10  Score=104.09  Aligned_cols=62  Identities=8%  Similarity=0.087  Sum_probs=46.7

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        78 ~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      .++..+..+|.+.++..|+..  +++ +|+++..++++..+.|.+.++       .+ +.+|.||+|+|.++.
T Consensus       162 i~~~~l~~~L~~~a~~~gv~~--~~~-~v~~i~~~~~g~~~~v~~~~g-------~~-i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          162 FDAHLVADFLKRWAVERGVNR--VVD-EVVDVRLNNRGYISNLLTKEG-------RT-LEADLFIDCSGMRGL  223 (538)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEE--EEC-CEEEEEECTTSCEEEEEETTS-------CE-ECCSEEEECCGGGCC
T ss_pred             EeHHHHHHHHHHHHHHCCCEE--EEe-eEeEEEEcCCCcEEEEEECCC-------cE-EEeCEEEECCCCchh
Confidence            456888999999988888665  778 799998765333456666553       46 899999999997554

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.00  E-value=1.1e-08  Score=95.43  Aligned_cols=138  Identities=17%  Similarity=0.135  Sum_probs=85.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC--------CCC--ceEE-ecCcc--------------
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------SYD--RLRL-HLAKQ--------------   61 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~--------~~~--~~~~-~~~~~--------------   61 (303)
                      .+||+|||+|++|+++|..|++.|.+|+|+|+.+..||.....        ...  .... .....              
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND  205 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            4699999999999999999999999999999998877643211        000  0000 00000              


Q ss_pred             -----------------c----ccCC------CCCCCCCC-C--CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEE
Q 022090           62 -----------------F----CQLP------HLPFPSSY-P--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASY  111 (303)
Q Consensus        62 -----------------~----~~~~------~~~~~~~~-~--~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~  111 (303)
                                       +    ..+.      ...++... +  .......+...|.+.+++.++++  +++++|+++..
T Consensus       206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i--~~~t~v~~l~~  283 (572)
T 1d4d_A          206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDI--RLNSRVVRILE  283 (572)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEE--ESSEEEEEEEE
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeE--EecCEEEEEEE
Confidence                             0    0000      00000000 0  01235678888999888888665  99999999976


Q ss_pred             eCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090          112 DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       112 ~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      ++.+..+.|...+.. +  +... +.++.||+|||.++.
T Consensus       284 ~~~g~v~GV~~~~~~-G--~~~~-i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          284 DASGKVTGVLVKGEY-T--GYYV-IKADAVVIAAGGFAK  318 (572)
T ss_dssp             C--CCEEEEEEEETT-T--EEEE-EECSEEEECCCCCTT
T ss_pred             CCCCeEEEEEEEeCC-C--cEEE-EEcCEEEEeCCCCcc
Confidence            542344445555311 1  3357 899999999997653

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.00  E-value=2e-09  Score=92.45  Aligned_cols=105  Identities=23%  Similarity=0.320  Sum_probs=64.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCC-CccCcC-CCCceEEecCc-ccccCCCCCCCC--CCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA-SIWKKY-SYDRLRLHLAK-QFCQLPHLPFPS--SYPMFVS   79 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~g-g~w~~~-~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~   79 (303)
                      .+||+|||||++|+++|..|++.  |.+|+|+|+.+..| +.|... .+......... ....-...++..  .+.....
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~  144 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKH  144 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcc
Confidence            35999999999999999999998  99999999988776 566422 12222222110 000000111111  1111114


Q ss_pred             HHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeC
Q 022090           80 RAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDE  113 (303)
Q Consensus        80 ~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~  113 (303)
                      ..++...+.+.+... ++..  +.+++|+++..++
T Consensus       145 ~~~~~~~L~~~a~~~~GV~i--~~~~~V~~Ll~~~  177 (326)
T 2gjc_A          145 AALFISTVLSKVLQLPNVKL--FNATCVEDLVTRP  177 (326)
T ss_dssp             HHHHHHHHHHHHHTSTTEEE--ETTEEEEEEEECC
T ss_pred             hHHHHHHHHHHHHHhcCcEE--Eecceeeeeeecc
Confidence            566777777777664 6544  8889999998764

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.99  E-value=4.2e-09  Score=98.39  Aligned_cols=145  Identities=16%  Similarity=0.127  Sum_probs=86.0

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc---------cCcCC--CCceEEe------cCcccc
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI---------WKKYS--YDRLRLH------LAKQFC   63 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~---------w~~~~--~~~~~~~------~~~~~~   63 (303)
                      |......+||+|||||++|+++|..|++.|.+|+|+||....+|.         |....  .+....+      ......
T Consensus         1 m~~~~~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~~~ds~~~~~~d~~~~g~~~~   80 (588)
T 2wdq_A            1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIG   80 (588)
T ss_dssp             CCSCEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCS
T ss_pred             CCCccccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcchhhCCccEEcCCCCCCCCHHHHHHHHHHhcCCCC
Confidence            555445689999999999999999999999999999998755321         11110  0000000      000000


Q ss_pred             -----------------cC--CCCCCCC---------CCCC---------C--------CCHHHHHHHHHHHHHHcCCCc
Q 022090           64 -----------------QL--PHLPFPS---------SYPM---------F--------VSRAQFIEHLDHYVSHFNIGP   98 (303)
Q Consensus        64 -----------------~~--~~~~~~~---------~~~~---------~--------~~~~~l~~~l~~~~~~~~l~~   98 (303)
                                       .+  ...++..         ..+.         .        .....+...|.+.+.+.++++
T Consensus        81 d~~~v~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~g~~~~~~~~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i  160 (588)
T 2wdq_A           81 DQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTI  160 (588)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTCSBCCCEECSTTCHHHHHHHHHHHHHHHTTCEE
T ss_pred             CHHHHHHHHHhHHHHHHHHHHcCCCcccCCCCcEeeeecCCccccccccCcceEEEcCCCCHHHHHHHHHHHHHhCCCEE
Confidence                             00  0011100         0000         0        113577888888888777655


Q ss_pred             eeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           99 SIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        99 ~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                        ++++.|+++..++++..+-|...+..++  +... +.++.||+|||.++.
T Consensus       161 --~~~~~v~~L~~~~~g~v~Gv~~~~~~~g--~~~~-i~A~~VVlAtGg~~~  207 (588)
T 2wdq_A          161 --FSEWYALDLVKNQDGAVVGCTALCIETG--EVVY-FKARATVLATGGAGR  207 (588)
T ss_dssp             --EETEEEEEEEECTTSCEEEEEEEETTTC--CEEE-EEEEEEEECCCCCGG
T ss_pred             --EeCcEEEEEEECCCCEEEEEEEEEcCCC--eEEE-EEcCEEEECCCCCcc
Confidence              9999999998753233444555432222  3347 899999999997653

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.96  E-value=1.9e-09  Score=96.70  Aligned_cols=39  Identities=28%  Similarity=0.396  Sum_probs=36.3

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      +||+|||||++||++|..|+++|.+|+|+|+++.+||..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~   39 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRF   39 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCce
Confidence            489999999999999999999999999999999888743

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.95  E-value=4.5e-10  Score=100.39  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=33.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA   43 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~g   43 (303)
                      .+||+|||||++|+++|..|+++  |.+|+|+|+....+
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~   74 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPN   74 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSC
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            37999999999999999999999  99999999976443

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.94  E-value=1.2e-09  Score=91.44  Aligned_cols=41  Identities=17%  Similarity=0.356  Sum_probs=38.4

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~   48 (303)
                      +||+||||||+||+||..|+++|++|+||||++.+||.+..
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~   43 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSS   43 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccc
Confidence            69999999999999999999999999999999999987654

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.93  E-value=4.2e-09  Score=97.29  Aligned_cols=62  Identities=13%  Similarity=0.220  Sum_probs=46.0

Q ss_pred             CCHHHHHHHHHHHHHH-cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           78 VSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        78 ~~~~~l~~~l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      .++..+..+|.+.+++ .|+..  +++ +|+++..+++.....|.+.++       .+ +.+|.||.|+|.+|.
T Consensus       172 ~~r~~l~~~L~~~a~~~~Gv~i--~~~-~v~~i~~~~~g~~~~v~~~~g-------~~-i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          172 LNAAKFSQLLTEHCTQKLGVTH--IRD-HVSQIINNQHGDIEKLITKQN-------GE-ISGQLFIDCTGAKSL  234 (526)
T ss_dssp             ECHHHHHHHHHHHHHHTSCCEE--EEC-CEEEEEECTTSCEEEEEESSS-------CE-EECSEEEECSGGGCC
T ss_pred             EcHHHHHHHHHHHHHhcCCCEE--EEe-EEEEEEecCCCcEEEEEECCC-------CE-EEcCEEEECCCcchH
Confidence            4678899999999988 78755  788 599998765322345665543       46 899999999997654

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.92  E-value=3.9e-09  Score=94.92  Aligned_cols=39  Identities=28%  Similarity=0.315  Sum_probs=36.2

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      +||+|||||++|+++|..|+++|.+|+|+|+++.+||..
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~   40 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRA   40 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCee
Confidence            699999999999999999999999999999988887743

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.91  E-value=1.8e-09  Score=96.94  Aligned_cols=39  Identities=26%  Similarity=0.467  Sum_probs=36.3

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      +||+|||||++||++|..|+++|.+|+|+|+++.+||..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~   39 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRF   39 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcee
Confidence            489999999999999999999999999999999888754

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.90  E-value=6.5e-09  Score=96.56  Aligned_cols=62  Identities=15%  Similarity=0.165  Sum_probs=47.5

Q ss_pred             CCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           78 VSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        78 ~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      .++..+.++|.+.+++. |+..  +++ +|+++..+++...+.|.+.++       .+ +.+|.||+|+|..+.
T Consensus       191 ~~~~~l~~~L~~~~~~~~Gv~i--~~~-~V~~i~~~~~g~~~~v~~~~G-------~~-i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          191 FDAHLVADFLRRFATEKLGVRH--VED-RVEHVQRDANGNIESVRTATG-------RV-FDADLFVDCSGFRGL  253 (550)
T ss_dssp             ECHHHHHHHHHHHHHHHSCCEE--EEC-CEEEEEECTTSCEEEEEETTS-------CE-EECSEEEECCGGGCC
T ss_pred             EcHHHHHHHHHHHHHhcCCcEE--EEC-eEeEEEEcCCCCEEEEEECCC-------CE-EECCEEEECCCCchh
Confidence            56788999999999888 8766  888 899998755333355666553       56 899999999997553

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.89  E-value=1.9e-09  Score=97.85  Aligned_cols=39  Identities=21%  Similarity=0.369  Sum_probs=36.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC------CCeEEEecCCCCCCc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS------IPYVILERENCYASI   45 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g------~~v~iie~~~~~gg~   45 (303)
                      ++||+|||||++||++|..|+++|      ++|+|+|+++.+||.
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~   49 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGK   49 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCce
Confidence            479999999999999999999999      999999999888873

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.89  E-value=4.3e-09  Score=96.85  Aligned_cols=62  Identities=18%  Similarity=0.168  Sum_probs=47.4

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        78 ~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      .++..+...|.+.+...|+..  +++ +|+++..+++...+.|.+.++       .+ +++|.||.|+|.++.
T Consensus       170 ~~~~~l~~~L~~~a~~~gv~~--~~~-~v~~i~~~~~~~~~~v~~~~g-------~~-~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          170 FDADEVARYLSEYAIARGVRH--VVD-DVQHVGQDERGWISGVHTKQH-------GE-ISGDLFVDCTGFRGL  231 (511)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEE--EEC-CEEEEEECTTSCEEEEEESSS-------CE-EECSEEEECCGGGCC
T ss_pred             EcHHHHHHHHHHHHHHCCCEE--EEC-eEeEEEEcCCCCEEEEEECCC-------CE-EEcCEEEECCCcchH
Confidence            467899999999998888665  888 899998755333356666553       47 899999999997654

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.85  E-value=2.8e-08  Score=92.59  Aligned_cols=38  Identities=16%  Similarity=0.359  Sum_probs=34.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      .+||+|||||++|+++|..|+++|.+|+|+|+++..+|
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~G   69 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEG   69 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            57999999999999999999999999999999875554

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.84  E-value=1.7e-08  Score=98.19  Aligned_cols=58  Identities=14%  Similarity=0.071  Sum_probs=44.8

Q ss_pred             CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCe-EEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM-WNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~-~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      +...+...+.+.+++.|+.+  +++++|+++..++  +. +.|.+.+        .+ +.||.||+|+|.++
T Consensus       149 ~p~~l~~~L~~~a~~~Gv~i--~~~t~V~~i~~~~--~~v~~V~t~~--------G~-i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          149 SAARAVQLLIKRTESAGVTY--RGSTTVTGIEQSG--GRVTGVQTAD--------GV-IPADIVVSCAGFWG  207 (830)
T ss_dssp             CHHHHHHHHHHHHHHTTCEE--ECSCCEEEEEEET--TEEEEEEETT--------EE-EECSEEEECCGGGH
T ss_pred             cHHHHHHHHHHHHHHcCCEE--ECCceEEEEEEeC--CEEEEEEECC--------cE-EECCEEEECCccch
Confidence            55678888888888888665  8899999998865  33 3465543        46 89999999999754

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.83  E-value=1.3e-08  Score=94.19  Aligned_cols=38  Identities=21%  Similarity=0.415  Sum_probs=34.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      ..+||+|||||++|+++|..|++ |.+|+|+||.+..+|
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g   44 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEG   44 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC-
T ss_pred             CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCC
Confidence            35799999999999999999999 999999999886654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.81  E-value=3.1e-08  Score=89.75  Aligned_cols=100  Identities=18%  Similarity=0.200  Sum_probs=77.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|++|+.+|..|++.|.+|+++|+.+.+.                      +.           ...++.+.
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l----------------------~~-----------~~~~~~~~  213 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRIL----------------------PT-----------MDLEVSRA  213 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC----------------------TT-----------SCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccc----------------------cc-----------cCHHHHHH
Confidence            4789999999999999999999999999999986531                      00           01366777


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.+++.+++.  +++++|++++.++  +.+.+.+.++       .+ +.+|.||+|+|  ..|+.
T Consensus       214 l~~~l~~~Gv~i--~~~~~V~~i~~~~--~~v~v~~~~g-------~~-i~~D~vv~A~G--~~p~~  266 (455)
T 2yqu_A          214 AERVFKKQGLTI--RTGVRVTAVVPEA--KGARVELEGG-------EV-LEADRVLVAVG--RRPYT  266 (455)
T ss_dssp             HHHHHHHHTCEE--ECSCCEEEEEEET--TEEEEEETTS-------CE-EEESEEEECSC--EEECC
T ss_pred             HHHHHHHCCCEE--EECCEEEEEEEeC--CEEEEEECCC-------eE-EEcCEEEECcC--CCcCC
Confidence            778778788766  9999999998765  4566666543       56 89999999999  55544

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.80  E-value=6.7e-08  Score=90.52  Aligned_cols=36  Identities=19%  Similarity=0.334  Sum_probs=33.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCY   42 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~   42 (303)
                      .+||+|||||++|+++|..|++.|  .+|+|+|+....
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~   42 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM   42 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            479999999999999999999999  999999998644

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.79  E-value=3.2e-08  Score=87.68  Aligned_cols=97  Identities=14%  Similarity=0.064  Sum_probs=76.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+...                               + ...++.+.
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------~-~~~~~~~~  192 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG-------------------------------L-LHPAAAKA  192 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-------------------------------T-SCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhc-------------------------------c-cCHHHHHH
Confidence            578999999999999999999999999999997643110                               0 01366777


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      +.+.+++.+++.  +++++|++++.++  +.+.|.+.++       .+ +++|.||+|+|.
T Consensus       193 l~~~l~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~d~vv~a~G~  241 (384)
T 2v3a_A          193 VQAGLEGLGVRF--HLGPVLASLKKAG--EGLEAHLSDG-------EV-IPCDLVVSAVGL  241 (384)
T ss_dssp             HHHHHHTTTCEE--EESCCEEEEEEET--TEEEEEETTS-------CE-EEESEEEECSCE
T ss_pred             HHHHHHHcCCEE--EeCCEEEEEEecC--CEEEEEECCC-------CE-EECCEEEECcCC
Confidence            888888788766  8999999998765  4567777654       56 899999999993

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.78  E-value=5e-08  Score=88.64  Aligned_cols=106  Identities=16%  Similarity=0.134  Sum_probs=79.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||||+.|+.+|..|++.|.+|+++|+.+.+..                      .           ...++.+.
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------------------~-----------~~~~~~~~  215 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP----------------------Q-----------GDPETAAL  215 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST----------------------T-----------SCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc----------------------c-----------cCHHHHHH
Confidence            47899999999999999999999999999999875310                      0           01367778


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+.+++.+++.  +++++|++++.++  +.+.|.+.+..++  +..+ +.+|.||+|+|  ..|+..
T Consensus       216 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-i~~D~vv~a~G--~~p~~~  274 (464)
T 2eq6_A          216 LRRALEKEGIRV--RTKTKAVGYEKKK--DGLHVRLEPAEGG--EGEE-VVVDKVLVAVG--RKPRTE  274 (464)
T ss_dssp             HHHHHHHTTCEE--ECSEEEEEEEEET--TEEEEEEEETTCC--SCEE-EEESEEEECSC--EEESCT
T ss_pred             HHHHHHhcCCEE--EcCCEEEEEEEeC--CEEEEEEeecCCC--ceeE-EEcCEEEECCC--cccCCC
Confidence            888888888766  9999999998765  4566766521001  2247 89999999999  555544

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.78  E-value=5.2e-08  Score=91.36  Aligned_cols=37  Identities=24%  Similarity=0.256  Sum_probs=33.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g   43 (303)
                      .+||+|||||++|+++|..|++.|.+|+|+|+....+
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~   54 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTR   54 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGG
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence            4799999999999999999999999999999986433

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.78  E-value=8e-08  Score=90.71  Aligned_cols=37  Identities=16%  Similarity=0.318  Sum_probs=34.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~   42 (303)
                      ..+||+|||||++|+++|..|++.|.+|+|+|+....
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~   40 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             ccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            3579999999999999999999999999999998754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.78  E-value=9e-08  Score=87.28  Aligned_cols=108  Identities=15%  Similarity=0.251  Sum_probs=80.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||||+.|+.+|..|++.|.+|+++++.+.+...+                                 ..++.++
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------~~~~~~~  229 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASM---------------------------------DGEVAKA  229 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSS---------------------------------CHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccccc---------------------------------CHHHHHH
Confidence            5789999999999999999999999999999987532110                                 1367788


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+.+++.+++.  +++++|++++..+.++.+.|.+.+..++  +..+ +.+|.||+|+|  ..|+..
T Consensus       230 l~~~l~~~gv~i--~~~~~v~~i~~~~~~~~~~v~~~~~~~g--~~~~-~~~D~vv~a~G--~~p~~~  290 (478)
T 1v59_A          230 TQKFLKKQGLDF--KLSTKVISAKRNDDKNVVEIVVEDTKTN--KQEN-LEAEVLLVAVG--RRPYIA  290 (478)
T ss_dssp             HHHHHHHTTCEE--ECSEEEEEEEEETTTTEEEEEEEETTTT--EEEE-EEESEEEECSC--EEECCT
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEEecCCCeEEEEEEEcCCC--CceE-EECCEEEECCC--CCcCCC
Confidence            888888888766  9999999998732234566766521111  1257 89999999999  555543

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.77  E-value=2.2e-08  Score=88.02  Aligned_cols=44  Identities=27%  Similarity=0.363  Sum_probs=40.4

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC-CCCCCccCc
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NCYASIWKK   48 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~-~~~gg~w~~   48 (303)
                      ...+||+|||||++||++|..|.++|++|+|+|++ +.+||.|..
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t   86 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKT   86 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCE
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceee
Confidence            34689999999999999999999999999999999 999997764

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.76  E-value=2e-09  Score=95.32  Aligned_cols=119  Identities=15%  Similarity=0.120  Sum_probs=73.9

Q ss_pred             CcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCC---CCc--cCcCCCC----------c-e----EEecCcccccC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY---ASI--WKKYSYD----------R-L----RLHLAKQFCQL   65 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~---gg~--w~~~~~~----------~-~----~~~~~~~~~~~   65 (303)
                      +||+|||||++|+++|..|++.  |++|+|+|+++..   |..  +..+...          . +    .......+.. 
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVH-   79 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEE-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEe-
Confidence            3899999999999999999999  9999999998765   221  0000000          0 0    0000000000 


Q ss_pred             CCCCCCC--CCC-CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEE
Q 022090           66 PHLPFPS--SYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV  142 (303)
Q Consensus        66 ~~~~~~~--~~~-~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI  142 (303)
                      .......  ..+ ...++.++.+.|.+.++..++..  +++++|++++..                    .. +++|.||
T Consensus        80 ~g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i--~~~~~v~~i~~~--------------------~~-~~ad~vV  136 (381)
T 3c4a_A           80 HNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAI--RFESPLLEHGEL--------------------PL-ADYDLVV  136 (381)
T ss_dssp             SSSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEE--ETTCCCCSGGGC--------------------CG-GGCSEEE
T ss_pred             CCeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEE--EeCCEeccchhc--------------------cc-ccCCEEE
Confidence            0000000  001 12468899999999998887655  888888766321                    12 5789999


Q ss_pred             EccCCCCC
Q 022090          143 VASGETTN  150 (303)
Q Consensus       143 lAtG~~~~  150 (303)
                      .|+|.+|.
T Consensus       137 ~AdG~~S~  144 (381)
T 3c4a_A          137 LANGVNHK  144 (381)
T ss_dssp             ECCGGGGG
T ss_pred             ECCCCCch
Confidence            99998765

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.75  E-value=9.4e-08  Score=86.62  Aligned_cols=103  Identities=15%  Similarity=0.146  Sum_probs=78.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +++|+|||+|+.|+.+|..|++.|.+|+++|+.+.+.                      +.           ...++.++
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l----------------------~~-----------~~~~~~~~  216 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL----------------------SG-----------FEKQMAAI  216 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS----------------------TT-----------SCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc----------------------cc-----------cCHHHHHH
Confidence            5799999999999999999999999999999986531                      00           01367777


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.+++.+++.  +++++|++++.++  +...+.+.+.+    +..+ +.+|.||+|+|  ..|+.
T Consensus       217 l~~~l~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~~g----~~~~-~~~D~vv~a~G--~~p~~  272 (455)
T 1ebd_A          217 IKKRLKKKGVEV--VTNALAKGAEERE--DGVTVTYEANG----ETKT-IDADYVLVTVG--RRPNT  272 (455)
T ss_dssp             HHHHHHHTTCEE--EESEEEEEEEEET--TEEEEEEEETT----EEEE-EEESEEEECSC--EEESC
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEEeC--CeEEEEEEeCC----ceeE-EEcCEEEECcC--CCccc
Confidence            888888888766  9999999998765  44566654211    1157 89999999999  55544

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.74  E-value=5.1e-09  Score=96.20  Aligned_cols=46  Identities=24%  Similarity=0.447  Sum_probs=39.1

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhC-CCCeEEEecCCCCCCcc
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASIW   46 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~iie~~~~~gg~w   46 (303)
                      |+.+...+||+|||||++||+||..|+++ |++|+|+|+++.+||..
T Consensus         4 Ms~p~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~   50 (513)
T 4gde_A            4 MTHPDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLA   50 (513)
T ss_dssp             --CCSEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGG
T ss_pred             CCCCCCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCe
Confidence            55554568999999999999999999875 99999999999999943

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.72  E-value=3.3e-08  Score=89.43  Aligned_cols=102  Identities=20%  Similarity=0.287  Sum_probs=76.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..++|+|||+|++|+.+|..|++.|.+|+++|+.+.+...                               + ...++.+
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------~-~~~~~~~  195 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV-------------------------------Y-LDKEFTD  195 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-------------------------------T-CCHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc-------------------------------c-CCHHHHH
Confidence            4579999999999999999999999999999998753210                               0 0136778


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      .+.+.+++.+++.  +++++|++++.++  ..+.+.+.+        .+ +++|.||+|+|  ..|+.+
T Consensus       196 ~l~~~l~~~gv~i--~~~~~v~~i~~~~--~v~~v~~~~--------~~-i~~d~vi~a~G--~~p~~~  249 (447)
T 1nhp_A          196 VLTEEMEANNITI--ATGETVERYEGDG--RVQKVVTDK--------NA-YDADLVVVAVG--VRPNTA  249 (447)
T ss_dssp             HHHHHHHTTTEEE--EESCCEEEEECSS--BCCEEEESS--------CE-EECSEEEECSC--EEESCG
T ss_pred             HHHHHHHhCCCEE--EcCCEEEEEEccC--cEEEEEECC--------CE-EECCEEEECcC--CCCChH
Confidence            8888888888665  8999999987542  333455432        46 89999999999  555543

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.72  E-value=7.1e-08  Score=87.32  Aligned_cols=101  Identities=14%  Similarity=0.103  Sum_probs=78.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+.                      +.+           ..++.+.
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l----------------------~~~-----------~~~~~~~  213 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL----------------------PSF-----------DPMISET  213 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS----------------------TTS-----------CHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchh----------------------hhh-----------hHHHHHH
Confidence            5689999999999999999999999999999876431                      000           1256777


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.+++.+++.  +++++|++++.++ ++.+.|.+.++       .+ +.+|.||+|+|  ..|+.
T Consensus       214 l~~~l~~~Gv~i--~~~~~v~~i~~~~-~~~~~v~~~~g-------~~-i~~D~vv~a~G--~~p~~  267 (450)
T 1ges_A          214 LVEVMNAEGPQL--HTNAIPKAVVKNT-DGSLTLELEDG-------RS-ETVDCLIWAIG--REPAN  267 (450)
T ss_dssp             HHHHHHHHSCEE--ECSCCEEEEEECT-TSCEEEEETTS-------CE-EEESEEEECSC--EEESC
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEEeC-CcEEEEEECCC-------cE-EEcCEEEECCC--CCcCC
Confidence            888888888766  9999999998754 23366777654       46 89999999999  55554

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.72  E-value=9.9e-08  Score=90.06  Aligned_cols=35  Identities=17%  Similarity=0.302  Sum_probs=32.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC------CCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ------SIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~------g~~v~iie~~~~   41 (303)
                      .+||+|||||++||++|..|++.      |.+|+|+||...
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~   62 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL   62 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence            47999999999999999999997      999999999764

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.71  E-value=9e-08  Score=86.94  Aligned_cols=100  Identities=17%  Similarity=0.118  Sum_probs=77.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                      +.+           ..++.+.
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l----------------------~~~-----------~~~~~~~  212 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLL----------------------FQF-----------DPLLSAT  212 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS----------------------TTS-----------CHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccc----------------------ccc-----------CHHHHHH
Confidence            4689999999999999999999999999999876431                      000           1256677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeE-EEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIE-EYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.+++.+++.  +++++|++++.++  +...|.+.++       . + +.+|.||+|+|  ..|+.
T Consensus       213 l~~~l~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~G-------~~~-i~~D~vv~a~G--~~p~~  266 (463)
T 2r9z_A          213 LAENMHAQGIET--HLEFAVAALERDA--QGTTLVAQDG-------TRL-EGFDSVIWAVG--RAPNT  266 (463)
T ss_dssp             HHHHHHHTTCEE--ESSCCEEEEEEET--TEEEEEETTC-------CEE-EEESEEEECSC--EEESC
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEEeC--CeEEEEEeCC-------cEE-EEcCEEEECCC--CCcCC
Confidence            777788888766  9999999998765  3467777654       4 7 89999999999  55554

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.70  E-value=5e-08  Score=88.19  Aligned_cols=33  Identities=30%  Similarity=0.455  Sum_probs=31.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC-CCeEEEecC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILERE   39 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~   39 (303)
                      .+||+|||||++|+++|..|+++| .+|+|+|++
T Consensus        23 ~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~   56 (448)
T 3axb_A           23 RFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG   56 (448)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccC
Confidence            479999999999999999999999 999999993

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.68  E-value=3.2e-07  Score=83.97  Aligned_cols=106  Identities=16%  Similarity=0.208  Sum_probs=80.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ...+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..                      .           ...++.+
T Consensus       197 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------------------~-----------~d~~~~~  243 (491)
T 3urh_A          197 VPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG----------------------G-----------MDGEVAK  243 (491)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS----------------------S-----------SCHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc----------------------c-----------CCHHHHH
Confidence            357899999999999999999999999999998775310                      0           0136777


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      .+.+.+++.++..  +++++|++++.++  +...+.+.+..++  +..+ +.+|.||+|+|  ..|+.
T Consensus       244 ~l~~~l~~~gV~v--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-i~~D~Vi~a~G--~~p~~  302 (491)
T 3urh_A          244 QLQRMLTKQGIDF--KLGAKVTGAVKSG--DGAKVTFEPVKGG--EATT-LDAEVVLIATG--RKPST  302 (491)
T ss_dssp             HHHHHHHHTTCEE--ECSEEEEEEEEET--TEEEEEEEETTSC--CCEE-EEESEEEECCC--CEECC
T ss_pred             HHHHHHHhCCCEE--EECCeEEEEEEeC--CEEEEEEEecCCC--ceEE-EEcCEEEEeeC--CccCC
Confidence            7888888888766  8999999998765  5566777642211  2257 89999999999  55544

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.67  E-value=1.8e-07  Score=86.31  Aligned_cols=101  Identities=12%  Similarity=0.020  Sum_probs=79.5

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      ..+.+++|||||+.|+..|..+++.|.+|+++++...+.                       .+           ..++.
T Consensus       221 ~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~-----------------------~~-----------D~ei~  266 (542)
T 4b1b_A          221 KDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLR-----------------------GF-----------DQQCA  266 (542)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSST-----------------------TS-----------CHHHH
T ss_pred             cCCceEEEECCCHHHHHHHHHHHhcCCeEEEeccccccc-----------------------cc-----------chhHH
Confidence            346799999999999999999999999999998754321                       00           13677


Q ss_pred             HHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.+..++.++..  +++..+..+...+  +...|...++       .+ +.+|.|++|+|  .+|+.
T Consensus       267 ~~l~~~l~~~gi~~--~~~~~v~~~~~~~--~~~~v~~~~~-------~~-~~~D~vLvAvG--R~Pnt  321 (542)
T 4b1b_A          267 VKVKLYMEEQGVMF--KNGILPKKLTKMD--DKILVEFSDK-------TS-ELYDTVLYAIG--RKGDI  321 (542)
T ss_dssp             HHHHHHHHHTTCEE--EETCCEEEEEEET--TEEEEEETTS-------CE-EEESEEEECSC--EEESC
T ss_pred             HHHHHHHHhhccee--ecceEEEEEEecC--CeEEEEEcCC-------Ce-EEEEEEEEccc--ccCCc
Confidence            88888888888766  8999999998876  5666766654       45 78999999999  55554

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.66  E-value=2.4e-08  Score=90.53  Aligned_cols=47  Identities=15%  Similarity=0.280  Sum_probs=40.6

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~   47 (303)
                      |+.+...+||+|||||++||++|..|++.|++|+++|+++.+||.+.
T Consensus         5 ~~~~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   51 (453)
T 2bcg_G            5 QETIDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAA   51 (453)
T ss_dssp             --CCCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             hhhccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCcccc
Confidence            33444568999999999999999999999999999999999999653

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.65  E-value=3.3e-07  Score=86.59  Aligned_cols=35  Identities=17%  Similarity=0.376  Sum_probs=32.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHh---h-CCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLS---L-QSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~---~-~g~~v~iie~~~~   41 (303)
                      .+||+|||||++|+++|..|+   + .|.+|+|+||...
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            479999999999999999999   6 8999999999874

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.65  E-value=1.9e-07  Score=89.63  Aligned_cols=38  Identities=34%  Similarity=0.476  Sum_probs=35.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+.+||
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGG  373 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceec
Confidence            57999999999999999999999999999999888877

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.63  E-value=4.7e-07  Score=82.42  Aligned_cols=107  Identities=14%  Similarity=0.194  Sum_probs=78.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+...                     .           ...++.++
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---------------------~-----------~~~~~~~~  225 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV---------------------G-----------IDMEISKN  225 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS---------------------S-----------CCHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc---------------------c-----------cCHHHHHH
Confidence            478999999999999999999999999999998753100                     0           01367778


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.+++.+++.  +++++|++++.++ ++...+.+.+...+  ...+ +.+|.||+|+|  ..|+.
T Consensus       226 l~~~l~~~Gv~i--~~~~~v~~i~~~~-~~~~~v~~~~~~~~--~~~~-i~~D~vv~a~G--~~p~~  284 (474)
T 1zmd_A          226 FQRILQKQGFKF--KLNTKVTGATKKS-DGKIDVSIEAASGG--KAEV-ITCDVLLVCIG--RRPFT  284 (474)
T ss_dssp             HHHHHHHTTCEE--ECSEEEEEEEECT-TSCEEEEEEETTSC--CCEE-EEESEEEECSC--EEECC
T ss_pred             HHHHHHHCCCEE--EeCceEEEEEEcC-CceEEEEEEecCCC--CceE-EEcCEEEECcC--CCcCC
Confidence            888888888766  9999999998765 22256665321000  1157 89999999999  55543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.63  E-value=2.8e-07  Score=83.66  Aligned_cols=102  Identities=18%  Similarity=0.189  Sum_probs=78.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.                      +.           ...++.++
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------------------~~-----------~~~~~~~~  217 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRAL----------------------PN-----------EDADVSKE  217 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS----------------------TT-----------SCHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccc----------------------cc-----------cCHHHHHH
Confidence            5789999999999999999999999999999987531                      00           01367777


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEe-ecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+..++.+++.  +++++|++++.++  +...+.+. ++     +..+ +.+|.||+|+|  ..|+.
T Consensus       218 l~~~l~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~~g-----~~~~-~~~D~vv~a~G--~~p~~  273 (464)
T 2a8x_A          218 IEKQFKKLGVTI--LTATKVESIADGG--SQVTVTVTKDG-----VAQE-LKAEKVLQAIG--FAPNV  273 (464)
T ss_dssp             HHHHHHHHTCEE--ECSCEEEEEEECS--SCEEEEEESSS-----CEEE-EEESEEEECSC--EEECC
T ss_pred             HHHHHHHcCCEE--EeCcEEEEEEEcC--CeEEEEEEcCC-----ceEE-EEcCEEEECCC--CCccC
Confidence            888888888766  9999999998754  34556654 32     2257 89999999999  55544

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.63  E-value=2.7e-08  Score=91.24  Aligned_cols=40  Identities=30%  Similarity=0.354  Sum_probs=31.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      +++|+|||||++||+||..|+++|++|+|+|+++.+||..
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~   40 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRA   40 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcE
Confidence            3689999999999999999999999999999999999853

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.62  E-value=3.2e-08  Score=88.19  Aligned_cols=49  Identities=24%  Similarity=0.289  Sum_probs=41.6

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhC-CCCeEEEecCCCCCCccCcC
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASIWKKY   49 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~iie~~~~~gg~w~~~   49 (303)
                      |.++...+||+|||||++|+++|..|++. |.+|+|+|+++.+||.+...
T Consensus         1 m~~m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~   50 (399)
T 1v0j_A            1 MQPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSE   50 (399)
T ss_dssp             ---CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEE
T ss_pred             CCcccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeec
Confidence            55555568999999999999999999999 99999999999999987543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.62  E-value=3.4e-07  Score=83.24  Aligned_cols=102  Identities=16%  Similarity=0.181  Sum_probs=77.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+..                      .           ...++.+.
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------------------~-----------~d~~~~~~  220 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP----------------------T-----------LDEDVTNA  220 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST----------------------T-----------SCHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc----------------------c-----------CCHHHHHH
Confidence            47899999999999999999999999999998875310                      0           01356777


Q ss_pred             HHHHH-HHcCCCceeEeCeEEEEEEEeCCCCeEEEEEe--ecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYV-SHFNIGPSIRYQRSVESASYDEATNMWNVKAS--NLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~-~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~--~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.+ ++.+++.  +++++|++++.++  +.+.+.+.  ++     +..+ +.+|.||+|+|  ..|+.
T Consensus       221 l~~~l~~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~~~g-----~~~~-i~~D~vv~a~G--~~p~~  278 (468)
T 2qae_A          221 LVGALAKNEKMKF--MTSTKVVGGTNNG--DSVSLEVEGKNG-----KRET-VTCEALLVSVG--RRPFT  278 (468)
T ss_dssp             HHHHHHHHTCCEE--ECSCEEEEEEECS--SSEEEEEECC--------EEE-EEESEEEECSC--EEECC
T ss_pred             HHHHHhhcCCcEE--EeCCEEEEEEEcC--CeEEEEEEcCCC-----ceEE-EECCEEEECCC--cccCC
Confidence            88888 8888766  9999999998754  34666665  32     2256 89999999999  55543

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.61  E-value=2.8e-07  Score=83.61  Aligned_cols=171  Identities=13%  Similarity=0.085  Sum_probs=87.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEE--ecCcccccCCCCCC-----------C
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRL--HLAKQFCQLPHLPF-----------P   71 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~--~~~~~~~~~~~~~~-----------~   71 (303)
                      .++|+|||+|.+|+.+|..|.+.  +.+|+++++.+.+-.    ........  ..+.....+..++.           .
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p----~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~  302 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKP----ADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHN  302 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCB----CCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGG
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcC----ccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhc
Confidence            56899999999999999999999  889999999875310    00000000  00000000000000           0


Q ss_pred             CCCCCCCCHHHHHHHHHH-HHHH--cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090           72 SSYPMFVSRAQFIEHLDH-YVSH--FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (303)
Q Consensus        72 ~~~~~~~~~~~l~~~l~~-~~~~--~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~  148 (303)
                      ..+. ..+...+.+.... +.++  ....+.++++++|++++.++  +.|.|.+.+..++  +..+ +.+|.||+|||  
T Consensus       303 ~~~~-~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~v~~~~~~~g--~~~~-~~~D~Vv~AtG--  374 (463)
T 3s5w_A          303 TNYS-VVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATA--QGIELALRDAGSG--ELSV-ETYDAVILATG--  374 (463)
T ss_dssp             GTSS-CBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEET--TEEEEEEEETTTC--CEEE-EEESEEEECCC--
T ss_pred             cCCC-cCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecC--CEEEEEEEEcCCC--CeEE-EECCEEEEeeC--
Confidence            0000 0001111110111 1111  11234559999999998765  6788888754333  4457 89999999999  


Q ss_pred             CCCC--CCCCCCccccccCCCCCccEEecccCCCCC-CCCCCeEEEECCC
Q 022090          149 TNPF--TPDIRGLCSFCSSATGTGEVIHSTQYKNGK-PYGGKNVLVVGSG  195 (303)
Q Consensus       149 ~~p~--~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~v~ViG~G  195 (303)
                      ..|+  .+-+.++...      .|.+.....+.-.. .....+|.++|..
T Consensus       375 ~~p~~~~~~l~~l~~~------~g~i~v~~~~~~~~~~~~~~~Ifa~G~~  418 (463)
T 3s5w_A          375 YERQLHRQLLEPLAEY------LGDHEIGRDYRLQTDERCKVAIYAQGFS  418 (463)
T ss_dssp             EECCC-CTTTGGGGGG------BC--CCCTTSBCCBCTTBCSEEEESSCC
T ss_pred             CCCCCccchhHHHHHH------hCCcccCcccccccCCCCCCeEEEcCCC
Confidence            4444  3334444332      24343434333211 1113568888863

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.61  E-value=2.9e-07  Score=82.36  Aligned_cols=101  Identities=18%  Similarity=0.225  Sum_probs=78.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++++.+.+-.                               . .....+.++
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~-------------------------------~-~~~~~~~~~  199 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA-------------------------------R-VAGEALSEF  199 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-------------------------------T-TSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh-------------------------------h-hcCHHHHHH
Confidence            57899999999999999999999999999999875310                               0 011367788


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+..++.|++.  ++++.|+++..++ +....|.+.++       .+ +.+|.||+|+|  ..|+
T Consensus       200 l~~~l~~~GV~i--~~~~~v~~i~~~~-~~v~~v~l~dG-------~~-i~aD~Vv~a~G--~~p~  252 (415)
T 3lxd_A          200 YQAEHRAHGVDL--RTGAAMDCIEGDG-TKVTGVRMQDG-------SV-IPADIVIVGIG--IVPC  252 (415)
T ss_dssp             HHHHHHHTTCEE--EETCCEEEEEESS-SBEEEEEESSS-------CE-EECSEEEECSC--CEES
T ss_pred             HHHHHHhCCCEE--EECCEEEEEEecC-CcEEEEEeCCC-------CE-EEcCEEEECCC--CccC
Confidence            888888888776  8999999998754 22335777664       57 89999999999  5454

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.60  E-value=1.6e-07  Score=85.66  Aligned_cols=99  Identities=18%  Similarity=0.268  Sum_probs=75.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+...                                 ...++.+
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---------------------------------~~~~~~~  231 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI---------------------------------YDGDMAE  231 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS---------------------------------SCHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc---------------------------------CCHHHHH
Confidence            4579999999999999999999999999999987643210                                 0136777


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      .+.+.+++.+++.  +++++|++++.++  ..+.+.+.+        .+ +.+|.||+|+|  ..|+
T Consensus       232 ~l~~~l~~~Gv~i--~~~~~v~~i~~~~--~v~~v~~~~--------~~-i~~D~vi~a~G--~~p~  283 (480)
T 3cgb_A          232 YIYKEADKHHIEI--LTNENVKAFKGNE--RVEAVETDK--------GT-YKADLVLVSVG--VKPN  283 (480)
T ss_dssp             HHHHHHHHTTCEE--ECSCCEEEEEESS--BEEEEEETT--------EE-EECSEEEECSC--EEES
T ss_pred             HHHHHHHHcCcEE--EcCCEEEEEEcCC--cEEEEEECC--------CE-EEcCEEEECcC--CCcC
Confidence            8888888888766  8899999997642  334454432        57 89999999999  4444

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.60  E-value=1.2e-07  Score=86.47  Aligned_cols=103  Identities=13%  Similarity=0.063  Sum_probs=77.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||||+.|+.+|..|++.|.+|+++++.+.+.                      +.           ...++.+.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l----------------------~~-----------~~~~~~~~  231 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM----------------------QG-----------ADRDLVKV  231 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS----------------------TT-----------SCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc----------------------cc-----------cCHHHHHH
Confidence            5789999999999999999999999999999987531                      00           01366777


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEee-cCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN-LLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+..++.+++.  +++++|++++.++  +...|.+.+ ...+    .+ +.+|.||+|+|  ..|+.
T Consensus       232 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~~~~~g----~~-~~~D~vv~a~G--~~p~~  288 (482)
T 1ojt_A          232 WQKQNEYRFDNI--MVNTKTVAVEPKE--DGVYVTFEGANAPK----EP-QRYDAVLVAAG--RAPNG  288 (482)
T ss_dssp             HHHHHGGGEEEE--ECSCEEEEEEEET--TEEEEEEESSSCCS----SC-EEESCEEECCC--EEECG
T ss_pred             HHHHHHhcCCEE--EECCEEEEEEEcC--CeEEEEEeccCCCc----eE-EEcCEEEECcC--CCcCC
Confidence            778777777665  9999999998765  446676654 1101    45 78999999999  55543

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.59  E-value=3.1e-07  Score=83.97  Aligned_cols=101  Identities=13%  Similarity=0.105  Sum_probs=78.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC---CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (303)
                      ..+++|||+|+.|+.+|..|.+.   |.+|+++++.+.+.                      +.+           ..++
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l----------------------~~~-----------d~~~  233 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL----------------------RGF-----------DSEL  233 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS----------------------TTS-----------CHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc----------------------ccc-----------CHHH
Confidence            46899999999999999999999   99999999987531                      000           1267


Q ss_pred             HHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      .+.+.+.+++.++++  +++++|++++.++ ++.+.|.+.++       .+ +.+|.||+|+|  ..|+.
T Consensus       234 ~~~l~~~l~~~GV~i--~~~~~v~~i~~~~-~~~~~v~~~~G-------~~-i~~D~vv~a~G--~~p~~  290 (490)
T 1fec_A          234 RKQLTEQLRANGINV--RTHENPAKVTKNA-DGTRHVVFESG-------AE-ADYDVVMLAIG--RVPRS  290 (490)
T ss_dssp             HHHHHHHHHHTTEEE--EETCCEEEEEECT-TSCEEEEETTS-------CE-EEESEEEECSC--EEESC
T ss_pred             HHHHHHHHHhCCCEE--EeCCEEEEEEEcC-CCEEEEEECCC-------cE-EEcCEEEEccC--CCcCc
Confidence            778888888888766  9999999998754 23467777653       46 89999999999  55544

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.59  E-value=2.3e-07  Score=84.38  Aligned_cols=105  Identities=13%  Similarity=0.190  Sum_probs=78.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..                      .           ...++.++
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~----------------------~-----------~~~~~~~~  223 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP----------------------T-----------MDAEIRKQ  223 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST----------------------T-----------SCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc----------------------c-----------ccHHHHHH
Confidence            57899999999999999999999999999999875310                      0           01367788


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.+++.+++.  +++++|++++.++  +...+.+.+..++  +..+ +.+|.||+|+|  ..|+.
T Consensus       224 l~~~l~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-~~~D~vv~a~G--~~p~~  281 (470)
T 1dxl_A          224 FQRSLEKQGMKF--KLKTKVVGVDTSG--DGVKLTVEPSAGG--EQTI-IEADVVLVSAG--RTPFT  281 (470)
T ss_dssp             HHHHHHHSSCCE--ECSEEEEEEECSS--SSEEEEEEESSSC--CCEE-EEESEEECCCC--EEECC
T ss_pred             HHHHHHHcCCEE--EeCCEEEEEEEcC--CeEEEEEEecCCC--cceE-EECCEEEECCC--CCcCC
Confidence            888888888776  9999999997654  3466666521000  1257 89999999999  55543

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.59  E-value=9.9e-08  Score=86.55  Aligned_cols=101  Identities=15%  Similarity=0.148  Sum_probs=75.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||||++|+.+|..|++.|.+|+++++.+.+..                      .           ...++.++
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------------------~-----------~~~~~~~~  217 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP----------------------T-----------YDSELTAP  217 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST----------------------T-----------SCHHHHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc----------------------c-----------cCHHHHHH
Confidence            56899999999999999999999999999999875320                      0           01256677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+.+++.+++.  +++++|++++. +  + ..+...++     +..+ +.+|.||+|+|  ..|+.+
T Consensus       218 l~~~l~~~gv~i--~~~~~v~~i~~-~--~-v~v~~~~G-----~~~~-i~~D~vv~a~G--~~p~~~  271 (458)
T 1lvl_A          218 VAESLKKLGIAL--HLGHSVEGYEN-G--C-LLANDGKG-----GQLR-LEADRVLVAVG--RRPRTK  271 (458)
T ss_dssp             HHHHHHHHTCEE--ETTCEEEEEET-T--E-EEEECSSS-----CCCE-ECCSCEEECCC--EEECCS
T ss_pred             HHHHHHHCCCEE--EECCEEEEEEe-C--C-EEEEECCC-----ceEE-EECCEEEECcC--CCcCCC
Confidence            777778888766  89999999875 3  2 44442122     2246 89999999999  555544

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.59  E-value=5.8e-07  Score=82.25  Aligned_cols=104  Identities=15%  Similarity=0.126  Sum_probs=75.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                      +           ..++.+.
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------~-----------d~~~~~~  220 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL----------------------Q-----------DEEMKRY  220 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC----------------------C-----------CHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc----------------------C-----------CHHHHHH
Confidence            578999999999999999999999999999998753210                      0           1256666


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+..++. +.  +++++.|++++.++  +...+.+.+.++   +..+ +.+|.||+|+|  ..|+..
T Consensus       221 l~~~l~~~-V~--i~~~~~v~~i~~~~--~~v~v~~~~~~G---~~~~-i~~D~Vi~a~G--~~p~~~  277 (492)
T 3ic9_A          221 AEKTFNEE-FY--FDAKARVISTIEKE--DAVEVIYFDKSG---QKTT-ESFQYVLAATG--RKANVD  277 (492)
T ss_dssp             HHHHHHTT-SE--EETTCEEEEEEECS--SSEEEEEECTTC---CEEE-EEESEEEECSC--CEESCS
T ss_pred             HHHHHhhC-cE--EEECCEEEEEEEcC--CEEEEEEEeCCC---ceEE-EECCEEEEeeC--CccCCC
Confidence            76666654 44  48899999998765  446666652111   2357 89999999999  555543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.59  E-value=4.4e-07  Score=82.15  Aligned_cols=101  Identities=14%  Similarity=0.148  Sum_probs=77.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+++|||+|..|+.+|..|.+.|.+|+++++.+.+...                               . -..++.+.
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------~-~d~~~~~~  194 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPK-------------------------------Y-FDKEMVAE  194 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-------------------------------T-CCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccc-------------------------------c-CCHHHHHH
Confidence            468999999999999999999999999999998753100                               0 01367778


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+.+++.+++.  ++++.|++++..+  +...|.+.+        .+ +.+|.||+|+|  ..|+..
T Consensus       195 l~~~l~~~GV~i--~~~~~v~~i~~~~--~~v~v~~~~--------g~-i~aD~Vv~A~G--~~p~~~  247 (452)
T 3oc4_A          195 VQKSLEKQAVIF--HFEETVLGIEETA--NGIVLETSE--------QE-ISCDSGIFALN--LHPQLA  247 (452)
T ss_dssp             HHHHHHTTTEEE--EETCCEEEEEECS--SCEEEEESS--------CE-EEESEEEECSC--CBCCCS
T ss_pred             HHHHHHHcCCEE--EeCCEEEEEEccC--CeEEEEECC--------CE-EEeCEEEECcC--CCCChH
Confidence            888888888665  8999999998654  345566643        36 89999999999  555443

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.58  E-value=2.5e-07  Score=82.44  Aligned_cols=101  Identities=19%  Similarity=0.176  Sum_probs=77.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++++.+.+...                                ....++.++
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~--------------------------------~~~~~~~~~  189 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMAR--------------------------------VVTPEISSY  189 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT--------------------------------TSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhh--------------------------------ccCHHHHHH
Confidence            468999999999999999999999999999987643100                                011367788


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+..++.|++.  ++++.|+++..++ +....|.+.++       ++ +.+|.||+|+|  ..|+
T Consensus       190 l~~~l~~~GV~i--~~~~~v~~i~~~~-~~v~~V~~~dG-------~~-i~aD~Vv~a~G--~~p~  242 (404)
T 3fg2_P          190 FHDRHSGAGIRM--HYGVRATEIAAEG-DRVTGVVLSDG-------NT-LPCDLVVVGVG--VIPN  242 (404)
T ss_dssp             HHHHHHHTTCEE--ECSCCEEEEEEET-TEEEEEEETTS-------CE-EECSEEEECCC--EEEC
T ss_pred             HHHHHHhCCcEE--EECCEEEEEEecC-CcEEEEEeCCC-------CE-EEcCEEEECcC--CccC
Confidence            888888888776  8999999998764 22335666654       57 89999999999  4444

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.58  E-value=1.1e-07  Score=85.10  Aligned_cols=100  Identities=16%  Similarity=0.181  Sum_probs=77.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+-...                                ...++.++
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~--------------------------------~~~~~~~~  190 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRV--------------------------------LGRRIGAW  190 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHH--------------------------------HCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhh--------------------------------cCHHHHHH
Confidence            5789999999999999999999999999999876531000                                01366778


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+..++.|++.  ++++.|++++.++  ....|.+.++       ++ +.+|.||+|+|  ..|+
T Consensus       191 l~~~l~~~GV~i--~~~~~v~~i~~~~--~~~~v~~~dg-------~~-i~aD~Vv~a~G--~~p~  242 (410)
T 3ef6_A          191 LRGLLTELGVQV--ELGTGVVGFSGEG--QLEQVMASDG-------RS-FVADSALICVG--AEPA  242 (410)
T ss_dssp             HHHHHHHHTCEE--ECSCCEEEEECSS--SCCEEEETTS-------CE-EECSEEEECSC--EEEC
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEeccC--cEEEEEECCC-------CE-EEcCEEEEeeC--Ceec
Confidence            888888888766  8899999997643  4456777664       57 89999999999  4444

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.58  E-value=8.8e-08  Score=85.87  Aligned_cols=47  Identities=28%  Similarity=0.439  Sum_probs=40.4

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCC-CCeEEEecCCCCCCccCc
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKK   48 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~~~gg~w~~   48 (303)
                      |+. ...+||+|||||++||++|..|++.| .+|+|+|+++.+||.+..
T Consensus         1 M~~-~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t   48 (424)
T 2b9w_A            1 MSI-SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHS   48 (424)
T ss_dssp             -CC-CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCC
T ss_pred             CCC-CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccc
Confidence            642 34689999999999999999999999 899999999999986543

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.58  E-value=3.7e-07  Score=83.57  Aligned_cols=101  Identities=15%  Similarity=0.098  Sum_probs=78.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC---CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF   83 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (303)
                      ..+++|||+|..|+.+|..|++.   |.+|+++++.+.+-                      +.+           ..++
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l----------------------~~~-----------d~~~  237 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL----------------------RGF-----------DETI  237 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSC----------------------TTS-----------CHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccc----------------------ccc-----------CHHH
Confidence            46899999999999999999999   99999999876531                      000           1256


Q ss_pred             HHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      .+.+.+.+++.++++  +++++|++++.++ ++...|.+.++       .+ +.+|.||+|+|  ..|+.
T Consensus       238 ~~~l~~~l~~~GV~i--~~~~~v~~i~~~~-~~~~~v~~~~G-------~~-i~~D~vv~a~G--~~p~~  294 (495)
T 2wpf_A          238 REEVTKQLTANGIEI--MTNENPAKVSLNT-DGSKHVTFESG-------KT-LDVDVVMMAIG--RIPRT  294 (495)
T ss_dssp             HHHHHHHHHHTTCEE--EESCCEEEEEECT-TSCEEEEETTS-------CE-EEESEEEECSC--EEECC
T ss_pred             HHHHHHHHHhCCCEE--EeCCEEEEEEEcC-CceEEEEECCC-------cE-EEcCEEEECCC--Ccccc
Confidence            777888888888766  9999999998754 23466777654       46 89999999999  45543

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.58  E-value=5.3e-07  Score=82.68  Aligned_cols=102  Identities=16%  Similarity=0.108  Sum_probs=78.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                      +.+           ..++.+.
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l----------------------~~~-----------d~~~~~~  222 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL----------------------RKF-----------DESVINV  222 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC----------------------TTS-----------CHHHHHH
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccC----------------------ccc-----------chhhHHH
Confidence            5689999999999999999999999999999876531                      000           1367778


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+..++.+++.  +++++|++++.++ ++...|.+.++     + .. +.+|.||+|+|  ..|+.
T Consensus       223 l~~~l~~~gv~i--~~~~~v~~i~~~~-~~~~~v~~~~g-----~-~~-~~~D~vi~a~G--~~p~~  277 (500)
T 1onf_A          223 LENDMKKNNINI--VTFADVVEIKKVS-DKNLSIHLSDG-----R-IY-EHFDHVIYCVG--RSPDT  277 (500)
T ss_dssp             HHHHHHHTTCEE--ECSCCEEEEEESS-TTCEEEEETTS-----C-EE-EEESEEEECCC--BCCTT
T ss_pred             HHHHHHhCCCEE--EECCEEEEEEEcC-CceEEEEECCC-----c-EE-EECCEEEECCC--CCcCC
Confidence            888888888766  9999999998754 23366776653     2 35 78999999999  55554

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.58  E-value=2.5e-07  Score=82.56  Aligned_cols=96  Identities=20%  Similarity=0.290  Sum_probs=74.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|..|+.+|..|++.|.+|+++++.+.+...                                ....++.++
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~  192 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR--------------------------------AAPATLADF  192 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT--------------------------------TSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc--------------------------------ccCHHHHHH
Confidence            578999999999999999999999999999998753100                                001356777


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+..++.+++.  +++++|++++  +  +  .|.+.++       .+ +.+|.||+|+|  ..|+
T Consensus       193 l~~~l~~~GV~i--~~~~~v~~i~--~--~--~v~~~~g-------~~-i~~D~vi~a~G--~~p~  240 (408)
T 2gqw_A          193 VARYHAAQGVDL--RFERSVTGSV--D--G--VVLLDDG-------TR-IAADMVVVGIG--VLAN  240 (408)
T ss_dssp             HHHHHHHTTCEE--EESCCEEEEE--T--T--EEEETTS-------CE-EECSEEEECSC--EEEC
T ss_pred             HHHHHHHcCcEE--EeCCEEEEEE--C--C--EEEECCC-------CE-EEcCEEEECcC--CCcc
Confidence            888888888766  8999999997  3  2  5666553       56 89999999999  4444

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.57  E-value=3.5e-07  Score=83.12  Aligned_cols=97  Identities=13%  Similarity=0.157  Sum_probs=77.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+-                      +            ...++.+.
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------------------~------------~~~~~~~~  221 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFF----------------------R------------EDPAIGEA  221 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT----------------------T------------SCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccC----------------------C------------CCHHHHHH
Confidence            5689999999999999999999999999999876421                      1            01367788


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+.+++.|++.  +++++|++++.++  +.+.|.+.+        .+ +.+|.||+|+|  ..|+
T Consensus       222 l~~~l~~~Gv~i--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~aD~Vv~a~G--~~p~  272 (467)
T 1zk7_A          222 VTAAFRAEGIEV--LEHTQASQVAHMD--GEFVLTTTH--------GE-LRADKLLVATG--RTPN  272 (467)
T ss_dssp             HHHHHHHTTCEE--ETTCCEEEEEEET--TEEEEEETT--------EE-EEESEEEECSC--EEES
T ss_pred             HHHHHHhCCCEE--EcCCEEEEEEEeC--CEEEEEECC--------cE-EEcCEEEECCC--CCcC
Confidence            888888888766  8999999998754  456666642        57 89999999999  4444

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.57  E-value=3.6e-07  Score=83.33  Aligned_cols=103  Identities=12%  Similarity=0.071  Sum_probs=77.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                      +.           -..++.+.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l----------------------~~-----------~d~~~~~~  231 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL----------------------RK-----------FDECIQNT  231 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSC----------------------TT-----------SCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccc----------------------cc-----------cCHHHHHH
Confidence            5789999999999999999999999999999887531                      00           01356777


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.+++.|++.  +++++|++++.+++.....|.+.++     + .+ +.+|.||+|+|  ..|+.
T Consensus       232 l~~~l~~~Gv~i--~~~~~v~~i~~~~~~~~~~v~~~~G-----~-~~-i~~D~vv~a~G--~~p~~  287 (479)
T 2hqm_A          232 ITDHYVKEGINV--HKLSKIVKVEKNVETDKLKIHMNDS-----K-SI-DDVDELIWTIG--RKSHL  287 (479)
T ss_dssp             HHHHHHHHTCEE--ECSCCEEEEEECC-CCCEEEEETTS-----C-EE-EEESEEEECSC--EEECC
T ss_pred             HHHHHHhCCeEE--EeCCEEEEEEEcCCCcEEEEEECCC-----c-EE-EEcCEEEECCC--CCCcc
Confidence            888888888766  9999999998754221356666543     1 46 89999999999  55554

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.57  E-value=8e-07  Score=80.98  Aligned_cols=108  Identities=13%  Similarity=0.013  Sum_probs=79.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                      +.+           ..++.++
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------------------~~~-----------d~~~~~~  233 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL----------------------RSF-----------DSMISTN  233 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC----------------------TTS-----------CHHHHHH
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc----------------------ccc-----------CHHHHHH
Confidence            4789999999999999999999999999999876431                      000           1367778


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCcee--EEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI--EEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~--~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+.+++.+++.  ++++.|++++..++.....+.+.+...+  +.  .+ +.+|.||+|+|  ..|+..
T Consensus       234 ~~~~l~~~gv~i--~~~~~v~~i~~~~~~~~~~v~~~~~~~g--~~~g~~-~~~D~vi~a~G--~~p~~~  296 (478)
T 3dk9_A          234 CTEELENAGVEV--LKFSQVKEVKKTLSGLEVSMVTAVPGRL--PVMTMI-PDVDCLLWAIG--RVPNTK  296 (478)
T ss_dssp             HHHHHHHTTCEE--ETTEEEEEEEECSSSEEEEEEECCTTSC--CEEEEE-EEESEEEECSC--EEESCT
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEEcCCCcEEEEEEccCCCC--cccceE-EEcCEEEEeec--cccCCC
Confidence            888888888766  8999999998764221355666543211  11  56 89999999999  555443

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.57  E-value=3.5e-07  Score=82.31  Aligned_cols=102  Identities=13%  Similarity=0.172  Sum_probs=76.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..                               .. ...++.++
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~-------------------------------~~-~~~~~~~~  196 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE-------------------------------RV-TAPPVSAF  196 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT-------------------------------TT-SCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc-------------------------------ch-hhHHHHHH
Confidence            57899999999999999999999999999998764210                               00 01356777


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEe-CCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYD-EATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+.+++.|++.  +++++|++++.. +++....|.+.++       .+ +.+|.||+|+|  ..|+
T Consensus       197 l~~~l~~~GV~i--~~~~~v~~i~~~~~~~~v~~v~~~~G-------~~-i~~D~Vv~a~G--~~p~  251 (431)
T 1q1r_A          197 YEHLHREAGVDI--RTGTQVCGFEMSTDQQKVTAVLCEDG-------TR-LPADLVIAGIG--LIPN  251 (431)
T ss_dssp             HHHHHHHHTCEE--ECSCCEEEEEECTTTCCEEEEEETTS-------CE-EECSEEEECCC--EEEC
T ss_pred             HHHHHHhCCeEE--EeCCEEEEEEeccCCCcEEEEEeCCC-------CE-EEcCEEEECCC--CCcC
Confidence            788888888766  899999999862 2123345666654       56 89999999999  4443

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.57  E-value=3.9e-07  Score=84.03  Aligned_cols=100  Identities=13%  Similarity=0.102  Sum_probs=77.6

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   87 (303)
                      .+++|||+|..|+.+|..|.+.|.+|+++++.+.+.                      +.           ...++.+++
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l----------------------~~-----------~~~~~~~~l  261 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK----------------------LI-----------KDNETRAYV  261 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT----------------------TC-----------CSHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc----------------------cc-----------ccHHHHHHH
Confidence            789999999999999999999999999999887431                      00           013677888


Q ss_pred             HHHHHHcCCCceeEeCeEEEEEEEeCCCCe---EEEEEeecCCCCceeE-EEEeeCEEEEccCCCCCCCC
Q 022090           88 DHYVSHFNIGPSIRYQRSVESASYDEATNM---WNVKASNLLSPGREIE-EYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        88 ~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~---~~v~~~~~~~~~~~~~-~~~~ad~vIlAtG~~~~p~~  153 (303)
                      .+.+++.|++.  +++++|++++.++ ++.   +.|.+.++       . + +.+|.||+|+|  ..|+.
T Consensus       262 ~~~l~~~GV~i--~~~~~V~~i~~~~-~~~v~~~~v~~~~G-------~~~-i~aD~Vv~A~G--~~p~~  318 (523)
T 1mo9_A          262 LDRMKEQGMEI--ISGSNVTRIEEDA-NGRVQAVVAMTPNG-------EMR-IETDFVFLGLG--EQPRS  318 (523)
T ss_dssp             HHHHHHTTCEE--ESSCEEEEEEECT-TSBEEEEEEEETTE-------EEE-EECSCEEECCC--CEECC
T ss_pred             HHHHHhCCcEE--EECCEEEEEEEcC-CCceEEEEEEECCC-------cEE-EEcCEEEECcC--CccCC
Confidence            88888888766  9999999998754 222   56666543       3 7 89999999999  44443

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.56  E-value=4e-07  Score=83.48  Aligned_cols=100  Identities=15%  Similarity=0.171  Sum_probs=77.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                      +.           ...++.+.
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l----------------------~~-----------~d~~~~~~  228 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVL----------------------PY-----------EDADAALV  228 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSS----------------------CC-----------SSHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc----------------------cc-----------cCHHHHHH
Confidence            4789999999999999999999999999999887531                      00           01267778


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.+++.|+++  +++++|++++.++  +...|...++       .+ +.+|.||+|+|  ..|+.
T Consensus       229 l~~~l~~~GV~i--~~~~~V~~i~~~~--~~v~v~~~~g-------~~-i~aD~Vv~a~G--~~p~~  281 (499)
T 1xdi_A          229 LEESFAERGVRL--FKNARAASVTRTG--AGVLVTMTDG-------RT-VEGSHALMTIG--SVPNT  281 (499)
T ss_dssp             HHHHHHHTTCEE--ETTCCEEEEEECS--SSEEEEETTS-------CE-EEESEEEECCC--EEECC
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEEeC--CEEEEEECCC-------cE-EEcCEEEECCC--CCcCC
Confidence            888888888766  9999999998754  3455655443       57 89999999999  54543

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.56  E-value=6.4e-07  Score=81.57  Aligned_cols=104  Identities=17%  Similarity=0.185  Sum_probs=79.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.                      +.           ...++.+
T Consensus       179 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l----------------------~~-----------~~~~~~~  225 (476)
T 3lad_A          179 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL----------------------PA-----------VDEQVAK  225 (476)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS----------------------TT-----------SCHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC----------------------cc-----------cCHHHHH
Confidence            35689999999999999999999999999999987531                      00           0136777


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      .+.+.+++.+++.  +++++|++++.++  +...+.+.++++    ..+ +.+|.||+|+|  ..|+.
T Consensus       226 ~l~~~l~~~Gv~v--~~~~~v~~i~~~~--~~~~v~~~~~~g----~~~-~~~D~vi~a~G--~~p~~  282 (476)
T 3lad_A          226 EAQKILTKQGLKI--LLGARVTGTEVKN--KQVTVKFVDAEG----EKS-QAFDKLIVAVG--RRPVT  282 (476)
T ss_dssp             HHHHHHHHTTEEE--EETCEEEEEEECS--SCEEEEEESSSE----EEE-EEESEEEECSC--EEECC
T ss_pred             HHHHHHHhCCCEE--EECCEEEEEEEcC--CEEEEEEEeCCC----cEE-EECCEEEEeeC--CcccC
Confidence            7888888888665  8999999998765  456676665321    146 89999999999  55544

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.55  E-value=1.4e-06  Score=79.56  Aligned_cols=104  Identities=19%  Similarity=0.103  Sum_probs=79.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+++|||+|+.|+.+|..|++.|.+|+++++...+                       +.+           ..++.+.
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l-----------------------~~~-----------d~~~~~~  232 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVL-----------------------RGF-----------DQQMAEL  232 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSS-----------------------TTS-----------CHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC-----------------------ccc-----------CHHHHHH
Confidence            568999999999999999999999999999874321                       000           1367788


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+.+++.+++.  ++++.|++++..+ ++...|.+.++.++  +..+ +.+|.||+|+|  ..|+
T Consensus       233 l~~~l~~~Gv~i--~~~~~v~~i~~~~-~~~~~v~~~~~~~~--~~~~-~~~D~vi~a~G--~~p~  290 (483)
T 3dgh_A          233 VAASMEERGIPF--LRKTVPLSVEKQD-DGKLLVKYKNVETG--EESE-DVYDTVLWAIG--RKGL  290 (483)
T ss_dssp             HHHHHHHTTCCE--EETEEEEEEEECT-TSCEEEEEEETTTC--CEEE-EEESEEEECSC--EEEC
T ss_pred             HHHHHHhCCCEE--EeCCEEEEEEEcC-CCcEEEEEecCCCC--ceeE-EEcCEEEECcc--cccC
Confidence            888888888876  9999999998754 23466777665322  2357 89999999999  4444

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.54  E-value=1.7e-06  Score=79.12  Aligned_cols=105  Identities=15%  Similarity=0.023  Sum_probs=78.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+++|||+|+.|+.+|..|++.|.+|+++++...+.                       .+           ..++.+.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~-----------------------~~-----------d~~~~~~  230 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLR-----------------------GF-----------DQQMSSL  230 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST-----------------------TS-----------CHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccc-----------------------cC-----------CHHHHHH
Confidence            4689999999999999999999999999998854210                       00           1367788


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+..++.+++.  ++++.+.++...+ ++...+.+.+..++  +..+ +.+|.||+|+|  ..|+.
T Consensus       231 l~~~l~~~gv~~--~~~~~v~~i~~~~-~~~~~v~~~~~~~g--~~~~-~~~D~vi~a~G--~~p~~  289 (488)
T 3dgz_A          231 VTEHMESHGTQF--LKGCVPSHIKKLP-TNQLQVTWEDHASG--KEDT-GTFDTVLWAIG--RVPET  289 (488)
T ss_dssp             HHHHHHHTTCEE--EETEEEEEEEECT-TSCEEEEEEETTTT--EEEE-EEESEEEECSC--EEESC
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEEcC-CCcEEEEEEeCCCC--eeEE-EECCEEEEccc--CCccc
Confidence            888888888776  8999999998754 24466766653322  3346 78999999999  55543

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.54  E-value=4.5e-07  Score=82.06  Aligned_cols=101  Identities=14%  Similarity=0.126  Sum_probs=75.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+-..                     .           ...++.+.
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---------------------~-----------~~~~~~~~  196 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYK---------------------Y-----------FDKEFTDI  196 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTT---------------------T-----------SCHHHHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhh---------------------h-----------hhhhHHHH
Confidence            468999999999999999999999999999987643100                     0           01367778


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.+++.|++.  +++++|++++..+  +.......++       .+ +.+|.||+|+|  ..|+.
T Consensus       197 l~~~l~~~Gv~i--~~~~~v~~i~~~~--~~v~~v~~~g-------~~-i~~D~vv~a~G--~~p~~  249 (452)
T 2cdu_A          197 LAKDYEAHGVNL--VLGSKVAAFEEVD--DEIITKTLDG-------KE-IKSDIAILCIG--FRPNT  249 (452)
T ss_dssp             HHHHHHHTTCEE--EESSCEEEEEEET--TEEEEEETTS-------CE-EEESEEEECCC--EEECC
T ss_pred             HHHHHHHCCCEE--EcCCeeEEEEcCC--CeEEEEEeCC-------CE-EECCEEEECcC--CCCCH
Confidence            888888888766  9999999998643  3333222232       56 89999999999  55543

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.53  E-value=4.9e-07  Score=82.26  Aligned_cols=97  Identities=14%  Similarity=0.168  Sum_probs=76.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC-CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~-g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..+++|||+|+.|+.+|..|.+. |.+|+++++.+.+...                     .           ...++.+
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~---------------------~-----------~~~~~~~  206 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPG---------------------F-----------TSKSLSQ  206 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTT---------------------T-----------SCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccccc---------------------c-----------cCHHHHH
Confidence            57899999999999999999999 9999999987643100                     0           0136778


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      .+.+.+++.+++.  +++++|++++.++  +...+.+.++       ++ +.+|.||+|+|.
T Consensus       207 ~l~~~l~~~GV~i--~~~~~v~~i~~~~--~~v~v~~~~g-------~~-i~aD~Vv~a~G~  256 (472)
T 3iwa_A          207 MLRHDLEKNDVVV--HTGEKVVRLEGEN--GKVARVITDK-------RT-LDADLVILAAGV  256 (472)
T ss_dssp             HHHHHHHHTTCEE--ECSCCEEEEEESS--SBEEEEEESS-------CE-EECSEEEECSCE
T ss_pred             HHHHHHHhcCCEE--EeCCEEEEEEccC--CeEEEEEeCC-------CE-EEcCEEEECCCC
Confidence            8888888888766  8999999998744  4566777654       47 899999999993

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.52  E-value=4.8e-07  Score=82.60  Aligned_cols=100  Identities=20%  Similarity=0.270  Sum_probs=78.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                      +.+           ..++.+.
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l----------------------~~~-----------~~~~~~~  237 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL----------------------RNF-----------DYDLRQL  237 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS----------------------TTS-----------CHHHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccc----------------------ccc-----------CHHHHHH
Confidence            5689999999999999999999999999999876431                      000           1356777


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.+++.++..  ++++.|++++.++  +.+.|.+.++       .+ +.+|.||+|+|  ..|+.
T Consensus       238 l~~~l~~~Gv~i--~~~~~V~~i~~~~--~~v~v~~~~g-------~~-i~aD~Vi~A~G--~~p~~  290 (484)
T 3o0h_A          238 LNDAMVAKGISI--IYEATVSQVQSTE--NCYNVVLTNG-------QT-ICADRVMLATG--RVPNT  290 (484)
T ss_dssp             HHHHHHHHTCEE--ESSCCEEEEEECS--SSEEEEETTS-------CE-EEESEEEECCC--EEECC
T ss_pred             HHHHHHHCCCEE--EeCCEEEEEEeeC--CEEEEEECCC-------cE-EEcCEEEEeeC--CCcCC
Confidence            888888888766  8999999998765  4567777654       46 89999999999  44443

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.51  E-value=4.2e-07  Score=83.15  Aligned_cols=101  Identities=16%  Similarity=0.254  Sum_probs=75.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ...+|+|||+|+.|+.+|..|++.|.+|+++++.+.+-..                               . ...++.+
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------~-~~~~~~~  240 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG-------------------------------Y-YDRDLTD  240 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-------------------------------T-SCHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhh-------------------------------H-HHHHHHH
Confidence            4578999999999999999999999999999998653100                               0 0136777


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      .+.+.+++.+++.  +++++|++++.++  ....+.+ ++       .+ +.+|.||+|+|  ..|+.
T Consensus       241 ~l~~~l~~~GV~i--~~~~~v~~i~~~~--~v~~v~~-~g-------~~-i~~D~Vi~a~G--~~p~~  293 (490)
T 2bc0_A          241 LMAKNMEEHGIQL--AFGETVKEVAGNG--KVEKIIT-DK-------NE-YDVDMVILAVG--FRPNT  293 (490)
T ss_dssp             HHHHHHHTTTCEE--EETCCEEEEECSS--SCCEEEE-SS-------CE-EECSEEEECCC--EEECC
T ss_pred             HHHHHHHhCCeEE--EeCCEEEEEEcCC--cEEEEEE-CC-------cE-EECCEEEECCC--CCcCh
Confidence            8888888888766  9999999997522  2223444 32       46 89999999999  55543

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.50  E-value=6.9e-07  Score=83.15  Aligned_cols=98  Identities=18%  Similarity=0.201  Sum_probs=75.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|..|+.+|..|++.|.+|+++++.+.+.                      +.           ...++.+.
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l----------------------~~-----------~~~~~~~~  197 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVM----------------------TP-----------VDREMAGF  197 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSC----------------------TT-----------SCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccc----------------------hh-----------cCHHHHHH
Confidence            4689999999999999999999999999999976421                      00           01366777


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeC-----------------CCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDE-----------------ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~-----------------~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      +.+.+++.+++.  ++++.|++++.+.                 ..+...+...++       .+ +.+|.||+|+|.
T Consensus       198 l~~~l~~~GV~i--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-------~~-i~~D~vi~a~G~  265 (565)
T 3ntd_A          198 AHQAIRDQGVDL--RLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNG-------EL-LETDLLIMAIGV  265 (565)
T ss_dssp             HHHHHHHTTCEE--EETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTS-------CE-EEESEEEECSCE
T ss_pred             HHHHHHHCCCEE--EeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCC-------CE-EEcCEEEECcCC
Confidence            888888888766  8999999998741                 134556666543       47 899999999993

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.46  E-value=1.4e-06  Score=74.83  Aligned_cols=103  Identities=22%  Similarity=0.271  Sum_probs=74.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++++.+.+.                                   ....+.+.
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------------------------------~~~~~~~~  189 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKR  189 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC-----------------------------------CCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc-----------------------------------cCHHHHHH
Confidence            4689999999999999999999999999999876421                                   01245566


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCC-CCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS-PGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~-~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+.+++.+++.  +++++|+++..++ +....|.+.+..+ +  +..+ +.+|.||+|+|  ..|+
T Consensus       190 l~~~l~~~gv~i--~~~~~v~~i~~~~-~~v~~v~~~~~~~~g--~~~~-i~~D~vv~a~G--~~p~  248 (320)
T 1trb_A          190 LMDKVENGNIIL--HTNRTLEEVTGDQ-MGVTGVRLRDTQNSD--NIES-LDVAGLFVAIG--HSPN  248 (320)
T ss_dssp             HHHHHHTSSEEE--ECSCEEEEEEECS-SSEEEEEEECCTTCC--CCEE-EECSEEEECSC--EEES
T ss_pred             HHHhcccCCeEE--EcCceeEEEEcCC-CceEEEEEEeccCCC--ceEE-EEcCEEEEEeC--CCCC
Confidence            666667677655  8999999998654 2333466654211 1  2257 89999999999  4444

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.44  E-value=4.3e-06  Score=76.95  Aligned_cols=106  Identities=19%  Similarity=0.108  Sum_probs=75.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+++|||+|+.|+.+|..|++.|.+|+++++...+                       +.+           ..++.+.
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l-----------------------~~~-----------d~~~~~~  255 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL-----------------------RGF-----------DQDMANK  255 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSS-----------------------TTS-----------CHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEeccccc-----------------------ccC-----------CHHHHHH
Confidence            467999999999999999999999999999975321                       000           1367778


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCC--CCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEA--TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+..++.++.+  ++++.++++...+.  .+...+.....++.  +..+ +.+|.||+|+|  ..|+.
T Consensus       256 ~~~~l~~~GV~v--~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~--~~~~-~~~D~vi~a~G--~~p~~  317 (519)
T 3qfa_A          256 IGEHMEEHGIKF--IRQFVPIKVEQIEAGTPGRLRVVAQSTNSE--EIIE-GEYNTVMLAIG--RDACT  317 (519)
T ss_dssp             HHHHHHHTTCEE--EESEEEEEEEEEECCTTCEEEEEEEESSSS--CEEE-EEESEEEECSC--EEESC
T ss_pred             HHHHHHHCCCEE--EeCCeEEEEEEccCCCCceEEEEEEECCCc--EEEE-EECCEEEEecC--CcccC
Confidence            888888888776  88988888876432  23455555432221  2246 78999999999  55544

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.44  E-value=4.5e-07  Score=81.71  Aligned_cols=95  Identities=15%  Similarity=0.190  Sum_probs=72.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+++|||||+.|+.+|..|++.|.+|+++++.+.+...                      +           ..++.+.
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~----------------------~-----------d~~~~~~  193 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL----------------------M-----------DADMNQP  193 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT----------------------S-----------CGGGGHH
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc----------------------c-----------cchhHHH
Confidence            468999999999999999999999999999998753210                      0           0145566


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+..++.++..  +++++|++++..      .+.+.++       ++ +.+|.|++|+|  ..|+
T Consensus       194 ~~~~l~~~gV~i--~~~~~v~~~~~~------~v~~~~g-------~~-~~~D~vl~a~G--~~Pn  241 (437)
T 4eqs_A          194 ILDELDKREIPY--RLNEEINAINGN------EITFKSG-------KV-EHYDMIIEGVG--THPN  241 (437)
T ss_dssp             HHHHHHHTTCCE--EESCCEEEEETT------EEEETTS-------CE-EECSEEEECCC--EEES
T ss_pred             HHHHhhccceEE--EeccEEEEecCC------eeeecCC-------eE-EeeeeEEEEec--eecC
Confidence            777778888777  899999887532      3566554       56 89999999999  5554

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.44  E-value=2e-07  Score=82.55  Aligned_cols=43  Identities=23%  Similarity=0.309  Sum_probs=39.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~   48 (303)
                      ..+||+|||||++|+++|..|++.|.+|+|+|+++.+||.|..
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~   70 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYD   70 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCC
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccce
Confidence            3579999999999999999999999999999999999998764

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.43  E-value=1.2e-07  Score=87.22  Aligned_cols=40  Identities=28%  Similarity=0.422  Sum_probs=37.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC-CCeEEEecCCCCCCcc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIW   46 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~~~gg~w   46 (303)
                      .+||+|||||++||+||..|++.| .+|+|+|+++.+||.+
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~   48 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRL   48 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCce
Confidence            479999999999999999999999 9999999999999854

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.42  E-value=3.7e-07  Score=83.32  Aligned_cols=43  Identities=19%  Similarity=0.355  Sum_probs=39.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCC-CCeEEEecCCCCCCccCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKK   48 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~~~gg~w~~   48 (303)
                      ..+||+|||||++||++|..|++.| .+|+|+|+++.+||.|..
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~   51 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS   51 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence            4689999999999999999999998 799999999999998765

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.42  E-value=1.1e-06  Score=80.34  Aligned_cols=101  Identities=15%  Similarity=0.100  Sum_probs=75.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhh----CCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSL----QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ   82 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~----~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (303)
                      ..+|+|||||+.|+.+|..|++    .|.+|+++++.+...+                               ... ..+
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~-------------------------------~~l-~~~  227 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG-------------------------------KIL-PEY  227 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT-------------------------------TTS-CHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccc-------------------------------ccC-CHH
Confidence            4689999999999999999987    4789999987653110                               000 135


Q ss_pred             HHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        83 l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+++.+..++.|+..  ++++.|++++.++  +...|.+.++       .+ +.+|.||+|+|  ..|+.
T Consensus       228 ~~~~~~~~l~~~GV~v--~~~~~V~~i~~~~--~~~~v~l~dG-------~~-i~aD~Vv~a~G--~~pn~  284 (493)
T 1m6i_A          228 LSNWTMEKVRREGVKV--MPNAIVQSVGVSS--GKLLIKLKDG-------RK-VETDHIVAAVG--LEPNV  284 (493)
T ss_dssp             HHHHHHHHHHTTTCEE--ECSCCEEEEEEET--TEEEEEETTS-------CE-EEESEEEECCC--EEECC
T ss_pred             HHHHHHHHHHhcCCEE--EeCCEEEEEEecC--CeEEEEECCC-------CE-EECCEEEECCC--CCccH
Confidence            6777788888888766  8999999998654  4456766654       57 89999999999  44443

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.41  E-value=2.6e-07  Score=84.10  Aligned_cols=41  Identities=34%  Similarity=0.447  Sum_probs=37.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      ..+||+|||||++||++|..|++.|++|+|+|+++.+||..
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~   55 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAV   55 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee
Confidence            45799999999999999999999999999999999999843

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.38  E-value=3.1e-07  Score=84.16  Aligned_cols=41  Identities=29%  Similarity=0.428  Sum_probs=38.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~   47 (303)
                      .+||+|||||++||++|..|++.|++|+|+|+++.+||.+.
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~   53 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLR   53 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence            47999999999999999999999999999999999998653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.37  E-value=3.3e-06  Score=72.94  Aligned_cols=102  Identities=14%  Similarity=0.080  Sum_probs=73.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++++.+.+.                                   ....+.+.
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~-----------------------------------~~~~~~~~  196 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFR-----------------------------------AHEASVKE  196 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCC-----------------------------------SCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccC-----------------------------------ccHHHHHH
Confidence            4689999999999999999999999999999876421                                   01245566


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+..++.+++.  ++++.|.+++.++  +...|.+....++  +..+ +.+|.||+|+|  ..|+
T Consensus       197 l~~~l~~~gv~v--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~p~  253 (335)
T 2zbw_A          197 LMKAHEEGRLEV--LTPYELRRVEGDE--RVRWAVVFHNQTQ--EELA-LEVDAVLILAG--YITK  253 (335)
T ss_dssp             HHHHHHTTSSEE--ETTEEEEEEEESS--SEEEEEEEETTTC--CEEE-EECSEEEECCC--EEEE
T ss_pred             HHhccccCCeEE--ecCCcceeEccCC--CeeEEEEEECCCC--ceEE-EecCEEEEeec--CCCC
Confidence            666677667665  8999999998742  3335666521111  2257 89999999999  4444

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.37  E-value=3e-07  Score=84.74  Aligned_cols=40  Identities=30%  Similarity=0.420  Sum_probs=37.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      .+||+|||||++||+||..|++.|++|+|+|+++.+||..
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~   43 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRT   43 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCce
Confidence            4799999999999999999999999999999999998853

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.37  E-value=3.6e-07  Score=83.46  Aligned_cols=41  Identities=22%  Similarity=0.287  Sum_probs=38.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      ..+||+|||||++||++|..|++.|++|+|+|+++.+||.+
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~   50 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRV   50 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCce
Confidence            46799999999999999999999999999999999999853

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.37  E-value=2.5e-06  Score=77.42  Aligned_cols=100  Identities=14%  Similarity=0.130  Sum_probs=76.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                      +.+           ..++.+.
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l----------------------~~~-----------~~~~~~~  216 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL----------------------SRF-----------DQDMRRG  216 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS----------------------TTS-----------CHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc----------------------ccc-----------CHHHHHH
Confidence            5789999999999999999999999999999876421                      000           1367778


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEE-EeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVK-ASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~-~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.+++.+++.  ++++.|++++.++ ++...|. +.+        .+ +.+|.||+|+|  ..|+.
T Consensus       217 l~~~l~~~Gv~i--~~~~~v~~i~~~~-~~~~~v~~~~~--------g~-i~aD~Vv~a~G--~~p~~  270 (463)
T 4dna_A          217 LHAAMEEKGIRI--LCEDIIQSVSADA-DGRRVATTMKH--------GE-IVADQVMLALG--RMPNT  270 (463)
T ss_dssp             HHHHHHHTTCEE--ECSCCEEEEEECT-TSCEEEEESSS--------CE-EEESEEEECSC--EEESC
T ss_pred             HHHHHHHCCCEE--ECCCEEEEEEEcC-CCEEEEEEcCC--------Ce-EEeCEEEEeeC--cccCC
Confidence            888888888766  8999999998764 2335566 544        35 78999999999  44443

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.35  E-value=6.8e-07  Score=78.63  Aligned_cols=92  Identities=17%  Similarity=0.230  Sum_probs=72.0

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   87 (303)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+.+.                      +            -..++.+++
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------------------~------------~~~~~~~~l  189 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL----------------------G------------LDEELSNMI  189 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT----------------------T------------CCHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeec----------------------c------------CCHHHHHHH
Confidence            689999999999999999999999999999887531                      0            013677888


Q ss_pred             HHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        88 ~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      .+..++.+++.  +++++|++++  .  .  .|.+.+        .+ +++|.||+|+|  ..|+
T Consensus       190 ~~~l~~~gV~i--~~~~~v~~i~--~--~--~v~~~~--------g~-i~~D~vi~a~G--~~p~  235 (367)
T 1xhc_A          190 KDMLEETGVKF--FLNSELLEAN--E--E--GVLTNS--------GF-IEGKVKICAIG--IVPN  235 (367)
T ss_dssp             HHHHHHTTEEE--ECSCCEEEEC--S--S--EEEETT--------EE-EECSCEEEECC--EEEC
T ss_pred             HHHHHHCCCEE--EcCCEEEEEE--e--e--EEEECC--------CE-EEcCEEEECcC--CCcC
Confidence            88888888766  8899998886  2  1  355554        35 78999999999  5444

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.32  E-value=4e-07  Score=82.83  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=36.4

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCCCCCCcc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIW   46 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w   46 (303)
                      +||+|||||++||++|..|+++|.  +|+|+|+++.+||..
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~   43 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWI   43 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTC
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCce
Confidence            699999999999999999999999  999999999888744

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.31  E-value=5.3e-07  Score=82.53  Aligned_cols=41  Identities=27%  Similarity=0.302  Sum_probs=38.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      .++||+|||||++||++|..|++.|.+|+|+|+++.+||.+
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~   72 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRV   72 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCce
Confidence            46799999999999999999999999999999999999864

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.31  E-value=6.1e-07  Score=81.06  Aligned_cols=41  Identities=29%  Similarity=0.383  Sum_probs=38.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~   47 (303)
                      .+||+|||||++||++|..|++.|++|+|+|+++.+||.+.
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~   45 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTW   45 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence            47999999999999999999999999999999999988653

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.30  E-value=5.8e-07  Score=79.55  Aligned_cols=41  Identities=20%  Similarity=0.268  Sum_probs=38.8

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~   48 (303)
                      +||+|||||++|+++|..|++.|.+|+|+|+++.+||.|..
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~   44 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD   44 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcccc
Confidence            69999999999999999999999999999999999998764

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.30  E-value=1.7e-06  Score=80.87  Aligned_cols=94  Identities=14%  Similarity=0.204  Sum_probs=73.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|..|+.+|..|++.|.+|+++++.+.+.                      +.           ...++.+.
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l----------------------~~-----------~~~~~~~~  233 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVM----------------------PP-----------IDYEMAAY  233 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC----------------------TT-----------SCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc----------------------cc-----------CCHHHHHH
Confidence            4689999999999999999999999999999876431                      00           01366777


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      +.+.+++.++..  ++++.|++++.+.  +  .|.+.++       .+ +.+|.||+|+|.
T Consensus       234 l~~~l~~~GV~i--~~~~~v~~i~~~~--~--~v~~~~g-------~~-i~~D~Vi~a~G~  280 (588)
T 3ics_A          234 VHEHMKNHDVEL--VFEDGVDALEENG--A--VVRLKSG-------SV-IQTDMLILAIGV  280 (588)
T ss_dssp             HHHHHHHTTCEE--ECSCCEEEEEGGG--T--EEEETTS-------CE-EECSEEEECSCE
T ss_pred             HHHHHHHcCCEE--EECCeEEEEecCC--C--EEEECCC-------CE-EEcCEEEEccCC
Confidence            888888888766  8899999997543  2  3555543       56 899999999993

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.30  E-value=6.4e-07  Score=81.90  Aligned_cols=38  Identities=24%  Similarity=0.426  Sum_probs=36.4

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      +||+|||||++||++|..|++.|++|+|+|+++.+||.
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr   77 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGR   77 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTT
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence            79999999999999999999999999999999999884

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.29  E-value=6e-07  Score=79.00  Aligned_cols=41  Identities=22%  Similarity=0.253  Sum_probs=38.0

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~   48 (303)
                      +||+|||||++|+++|..|++.|.+|+|+|+++.+||....
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~   42 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT   42 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEe
Confidence            68999999999999999999999999999999999987543

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.29  E-value=2.5e-06  Score=77.03  Aligned_cols=98  Identities=17%  Similarity=0.295  Sum_probs=70.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                               . ...++.+.
T Consensus       148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------~-~~~~~~~~  195 (449)
T 3kd9_A          148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR-------------------------------S-FDKEVTDI  195 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-------------------------------T-SCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh-------------------------------h-cCHHHHHH
Confidence            468999999999999999999999999999998753100                               0 01256666


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+..++. ++  +++++.|.+++.++  ....+ ..++       .+ +.+|.||+|+|  ..|+
T Consensus       196 l~~~l~~~-v~--i~~~~~v~~i~~~~--~v~~v-~~~g-------~~-i~~D~Vv~a~G--~~p~  245 (449)
T 3kd9_A          196 LEEKLKKH-VN--LRLQEITMKIEGEE--RVEKV-VTDA-------GE-YKAELVILATG--IKPN  245 (449)
T ss_dssp             HHHHHTTT-SE--EEESCCEEEEECSS--SCCEE-EETT-------EE-EECSEEEECSC--EEEC
T ss_pred             HHHHHHhC-cE--EEeCCeEEEEeccC--cEEEE-EeCC-------CE-EECCEEEEeeC--CccC
Confidence            76666655 44  48899999886543  22223 3332       57 89999999999  4444

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.29  E-value=2.7e-06  Score=74.47  Aligned_cols=108  Identities=10%  Similarity=0.113  Sum_probs=71.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .++|+|||+|.+|+.+|..|.+.|.+|+++++.+.+...       .              +     .+...-...+.++
T Consensus       166 ~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~-------~--------------~-----d~~~~~~~~~~~~  219 (369)
T 3d1c_A          166 KGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDP-------D--------------A-----DPSVRLSPYTRQR  219 (369)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCEEEEECC------------------------------------CTTSCCHHHHHH
T ss_pred             CCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCC-------C--------------C-----CCCccCCHHHHHH
Confidence            358999999999999999999999999999987642100       0              0     0011111345566


Q ss_pred             HHHHHHHcC-CCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+..++.+ +..  ++++.|.+++.++  +.+.|.+.++.      .. ..+|.||+|+|  ..|+.
T Consensus       220 l~~~l~~~g~v~~--~~~~~v~~i~~~~--~~~~v~~~~g~------~~-~~~d~vi~a~G--~~~~~  274 (369)
T 3d1c_A          220 LGNVIKQGARIEM--NVHYTVKDIDFNN--GQYHISFDSGQ------SV-HTPHEPILATG--FDATK  274 (369)
T ss_dssp             HHHHHHTTCCEEE--ECSCCEEEEEEET--TEEEEEESSSC------CE-EESSCCEECCC--BCGGG
T ss_pred             HHHHHhhCCcEEE--ecCcEEEEEEecC--CceEEEecCCe------Ee-ccCCceEEeec--cCCcc
Confidence            666666664 655  8889999997654  45677776641      23 34699999999  55544

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.29  E-value=7.3e-06  Score=70.63  Aligned_cols=96  Identities=17%  Similarity=0.135  Sum_probs=68.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++++.+.+..                                       ...
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~---------------------------------------~~~  213 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA---------------------------------------STI  213 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---------------------------------------CHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC---------------------------------------CHH
Confidence            46899999999999999999999999999998764210                                       022


Q ss_pred             HHHHH-HHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           87 LDHYV-SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        87 l~~~~-~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      +.+.+ +..++..  ++++.|.+++.++ .....|.+.+..++  +..+ +.+|.||+|+|.
T Consensus       214 ~~~~l~~~~gv~i--~~~~~v~~i~~~~-~~~~~v~~~~~~~g--~~~~-i~~D~vi~a~G~  269 (338)
T 3itj_A          214 MQKRAEKNEKIEI--LYNTVALEAKGDG-KLLNALRIKNTKKN--EETD-LPVSGLFYAIGH  269 (338)
T ss_dssp             HHHHHHHCTTEEE--ECSEEEEEEEESS-SSEEEEEEEETTTT--EEEE-EECSEEEECSCE
T ss_pred             HHHHHHhcCCeEE--eecceeEEEEccc-CcEEEEEEEECCCC--ceEE-EEeCEEEEEeCC
Confidence            22333 3336554  8899999998765 23344666653222  3367 899999999993

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.26  E-value=8.6e-06  Score=69.49  Aligned_cols=99  Identities=18%  Similarity=0.160  Sum_probs=68.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|++|+.+|..|++.+.+|+++++.+.+.       .                           +     ..
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~---------------------------~-----~~  184 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK-------A---------------------------D-----QV  184 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC-------S---------------------------C-----HH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC-------c---------------------------c-----HH
Confidence            4689999999999999999999999999999876420       0                           0     12


Q ss_pred             HHHHHHH-cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+.+++ .+++.  +++++++++..++ +....|.+.+..++  +..+ +.+|.||+|+|  ..|+
T Consensus       185 ~~~~l~~~~gv~v--~~~~~v~~i~~~~-~~v~~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~p~  243 (310)
T 1fl2_A          185 LQDKLRSLKNVDI--ILNAQTTEVKGDG-SKVVGLEYRDRVSG--DIHN-IELAGIFVQIG--LLPN  243 (310)
T ss_dssp             HHHHHHTCTTEEE--ESSEEEEEEEESS-SSEEEEEEEETTTC--CEEE-EECSEEEECSC--EEES
T ss_pred             HHHHHhhCCCeEE--ecCCceEEEEcCC-CcEEEEEEEECCCC--cEEE-EEcCEEEEeeC--CccC
Confidence            2333333 45444  8899999998653 22224666553222  3357 89999999999  4444

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.25  E-value=8.6e-07  Score=80.62  Aligned_cols=40  Identities=23%  Similarity=0.307  Sum_probs=37.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCCCcc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIW   46 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w   46 (303)
                      ++||+|||||++|+++|..|++.|  .+|+|+|+++.+||..
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~   45 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKV   45 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTC
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCcee
Confidence            479999999999999999999999  9999999999888843

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.24  E-value=1.2e-06  Score=78.73  Aligned_cols=42  Identities=17%  Similarity=0.302  Sum_probs=38.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~   47 (303)
                      ..+||+|||+|++|+++|..|++.|.+|+++|+++.+||.+.
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~   46 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESS   46 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcccccc
Confidence            458999999999999999999999999999999999998643

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.23  E-value=1.1e-05  Score=69.09  Aligned_cols=99  Identities=20%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                   ....+   
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~-----------------------------------~~~~l---  196 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM-----------------------------------CENAY---  196 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC-----------------------------------SCHHH---
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC-----------------------------------CCHHH---
Confidence            3689999999999999999999999999999875321                                   00122   


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                       .+.+.+.+++.  +++++++++..++ .....|.+.+..++  +..+ +.+|.||+|+|  ..|+
T Consensus       197 -~~~l~~~gv~i--~~~~~v~~i~~~~-~~v~~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~p~  253 (319)
T 3cty_A          197 -VQEIKKRNIPY--IMNAQVTEIVGDG-KKVTGVKYKDRTTG--EEKL-IETDGVFIYVG--LIPQ  253 (319)
T ss_dssp             -HHHHHHTTCCE--ECSEEEEEEEESS-SSEEEEEEEETTTC--CEEE-ECCSEEEECCC--EEEC
T ss_pred             -HHHHhcCCcEE--EcCCeEEEEecCC-ceEEEEEEEEcCCC--ceEE-EecCEEEEeeC--CccC
Confidence             33334567666  8999999998754 11234555431111  2247 89999999999  4444

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.23  E-value=5.4e-06  Score=71.34  Aligned_cols=99  Identities=16%  Similarity=0.240  Sum_probs=67.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++++.+.+.                           .       . ..+.  
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---------------------------~-------~-~~~~--  194 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR---------------------------A-------N-KVAQ--  194 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC---------------------------S-------C-HHHH--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC---------------------------c-------c-hHHH--
Confidence            4689999999999999999999999999999876421                           0       0 1221  


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                       .+..+..+++  ++++++++++..++  ....|.+.+..++  +..+ +.+|.||+|+|  ..|+
T Consensus       195 -~~l~~~~gv~--i~~~~~v~~i~~~~--~v~~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~p~  250 (325)
T 2q7v_A          195 -ARAFANPKMK--FIWDTAVEEIQGAD--SVSGVKLRNLKTG--EVSE-LATDGVFIFIG--HVPN  250 (325)
T ss_dssp             -HHHHTCTTEE--EECSEEEEEEEESS--SEEEEEEEETTTC--CEEE-EECSEEEECSC--EEES
T ss_pred             -HHHHhcCCce--EecCCceEEEccCC--cEEEEEEEECCCC--cEEE-EEcCEEEEccC--CCCC
Confidence             2222223544  48899999998642  3335666531111  2247 89999999999  4444

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.23  E-value=6.7e-06  Score=71.83  Aligned_cols=102  Identities=15%  Similarity=0.142  Sum_probs=71.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++++.+.+..                                   ...+.+.
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~-----------------------------------~~~~~~~  207 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG-----------------------------------HGKTAHE  207 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS-----------------------------------CSHHHHS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC-----------------------------------CHHHHHH
Confidence            46899999999999999999999999999998764210                                   0134455


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+..++.+++.  +++++|++++.++ +....|.+...++   +... +.+|.||+|+|  ..|+
T Consensus       208 l~~~~~~~gv~i--~~~~~v~~i~~~~-~~v~~v~~~~~~g---~~~~-i~~D~vi~a~G--~~p~  264 (360)
T 3ab1_A          208 VERARANGTIDV--YLETEVASIEESN-GVLTRVHLRSSDG---SKWT-VEADRLLILIG--FKSN  264 (360)
T ss_dssp             SHHHHHHTSEEE--ESSEEEEEEEEET-TEEEEEEEEETTC---CEEE-EECSEEEECCC--BCCS
T ss_pred             HHHHhhcCceEE--EcCcCHHHhccCC-CceEEEEEEecCC---CeEE-EeCCEEEECCC--CCCC
Confidence            556666666555  8999999998764 1222455541111   2257 89999999999  4444

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.21  E-value=2.6e-05  Score=73.02  Aligned_cols=105  Identities=15%  Similarity=0.105  Sum_probs=72.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||||..|+.+|..|++.|.+|+++++...+                       +.+           ..++.++
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l-----------------------~~~-----------d~~~~~~  331 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRSILL-----------------------RGF-----------DQQMAEK  331 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSS-----------------------TTS-----------CHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCcCc-----------------------CcC-----------CHHHHHH
Confidence            468999999999999999999999999999986211                       000           1256677


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEe-----C--CCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYD-----E--ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~-----~--~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+..++.++..  ++++.++++...     +  ..+...+.....++   +... +.+|.||+|+|  ..|+.
T Consensus       332 ~~~~l~~~gv~i--~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g---~~~~-~~~D~vi~a~G--~~p~~  397 (598)
T 2x8g_A          332 VGDYMENHGVKF--AKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDG---KKFE-EEFETVIFAVG--REPQL  397 (598)
T ss_dssp             HHHHHHHTTCEE--EETEEEEEEEEEECCBTTTTBCCEEEEEEEETTS---CEEE-EEESEEEECSC--EEECG
T ss_pred             HHHHHHhCCCEE--EECCeEEEEEeccccccccCCCceEEEEEEeCCC---cEEe-ccCCEEEEEeC--Ccccc
Confidence            777777788766  889888887643     2  11344454322111   2234 56999999999  44543

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.21  E-value=6.5e-06  Score=74.70  Aligned_cols=104  Identities=18%  Similarity=0.270  Sum_probs=71.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                      .         +. ..++.+.
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------------------~---------~~-d~~~~~~  219 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALI----------------------T---------LE-DQDIVNT  219 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT----------------------T---------SC-CHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCC----------------------C---------CC-CHHHHHH
Confidence            46899999999999999999999999999998764310                      0         00 1244455


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP  154 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p  154 (303)
                      +.+..+   +  .+++++.|++++.++. +...+.+.+.+ +  +..+ +.+|.||+|+|  ..|+..
T Consensus       220 l~~~l~---v--~i~~~~~v~~i~~~~~-~~v~v~~~~~~-G--~~~~-i~~D~vi~a~G--~~p~~~  275 (466)
T 3l8k_A          220 LLSILK---L--NIKFNSPVTEVKKIKD-DEYEVIYSTKD-G--SKKS-IFTNSVVLAAG--RRPVIP  275 (466)
T ss_dssp             HHHHHC---C--CEECSCCEEEEEEEET-TEEEEEECCTT-S--CCEE-EEESCEEECCC--EEECCC
T ss_pred             HHhcCE---E--EEEECCEEEEEEEcCC-CcEEEEEEecC-C--ceEE-EEcCEEEECcC--CCcccc
Confidence            544433   4  4488999999976531 34566665211 1  2257 89999999999  555543

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.19  E-value=1.5e-06  Score=78.95  Aligned_cols=43  Identities=40%  Similarity=0.519  Sum_probs=38.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCCCCCccCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKK   48 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~   48 (303)
                      ..+||+|||||++|+++|..|.+.|. +|+|+|+++.+||.+..
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~   46 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK   46 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceee
Confidence            35799999999999999999999999 89999999999997654

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.19  E-value=1.1e-05  Score=69.34  Aligned_cols=98  Identities=13%  Similarity=0.075  Sum_probs=70.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|..|+.+|..|++.+.+|+++++.+.+..                                   ....   
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~-----------------------------------~~~~---  195 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA-----------------------------------HEHS---  195 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS-----------------------------------CHHH---
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc-----------------------------------cHHH---
Confidence            46899999999999999999999999999988764210                                   0011   


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                       ...+++.++..  +.++.+.++..++  +...|.+.+...+  +..+ +.+|.||+|+|  ..|+
T Consensus       196 -~~~l~~~gv~~--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-~~~D~vv~a~G--~~p~  251 (332)
T 3lzw_A          196 -VENLHASKVNV--LTPFVPAELIGED--KIEQLVLEEVKGD--RKEI-LEIDDLIVNYG--FVSS  251 (332)
T ss_dssp             -HHHHHHSSCEE--ETTEEEEEEECSS--SCCEEEEEETTSC--CEEE-EECSEEEECCC--EECC
T ss_pred             -HHHHhcCCeEE--EeCceeeEEecCC--ceEEEEEEecCCC--ceEE-EECCEEEEeec--cCCC
Confidence             12245567665  8899999997654  3455666653322  2367 89999999999  4443

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.19  E-value=6.1e-06  Score=70.46  Aligned_cols=101  Identities=17%  Similarity=0.168  Sum_probs=67.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                  .. ..+.+ 
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----------------------------------~~-~~~~~-  186 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR----------------------------------CA-PITLE-  186 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC----------------------------------SC-HHHHH-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC----------------------------------CC-HHHHH-
Confidence            4689999999999999999999999999999876421                                  00 12222 


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                        ...+..+++  +++++.++++..++ ++...|.+.+..++  +..+ +.+|.||+|+|  ..|+.
T Consensus       187 --~l~~~~gv~--v~~~~~v~~i~~~~-~~v~~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~p~~  243 (311)
T 2q0l_A          187 --HAKNNDKIE--FLTPYVVEEIKGDA-SGVSSLSIKNTATN--EKRE-LVVPGFFIFVG--YDVNN  243 (311)
T ss_dssp             --HHHTCTTEE--EETTEEEEEEEEET-TEEEEEEEEETTTC--CEEE-EECSEEEECSC--EEECC
T ss_pred             --HHhhCCCeE--EEeCCEEEEEECCC-CcEeEEEEEecCCC--ceEE-EecCEEEEEec--CccCh
Confidence              222234544  48899999998763 12224555531111  2247 89999999999  44443

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.17  E-value=8.4e-06  Score=70.30  Aligned_cols=102  Identities=20%  Similarity=0.257  Sum_probs=68.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++++.+.+.                                  . ...+.  
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~----------------------------------~-~~~~~--  201 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR----------------------------------A-SKIMQ--  201 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC----------------------------------S-CHHHH--
T ss_pred             CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC----------------------------------c-cHHHH--
Confidence            4689999999999999999999999999999876421                                  0 01111  


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCC-CeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEAT-NMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~-~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                       .+..++.+++.  +++++++++..+++. ....|.+.+..++  +..+ +.+|.||+|+|  ..|+.
T Consensus       202 -~~~~~~~gv~i--~~~~~v~~i~~~~~~~~v~~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~p~~  261 (333)
T 1vdc_A          202 -QRALSNPKIDV--IWNSSVVEAYGDGERDVLGGLKVKNVVTG--DVSD-LKVSGLFFAIG--HEPAT  261 (333)
T ss_dssp             -HHHHTCTTEEE--ECSEEEEEEEESSSSSSEEEEEEEETTTC--CEEE-EECSEEEECSC--EEESC
T ss_pred             -HHHHhCCCeeE--ecCCceEEEeCCCCccceeeEEEEecCCC--ceEE-EecCEEEEEeC--Cccch
Confidence             12333455544  889999999865421 2223555532111  2257 89999999999  44443

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.17  E-value=9.2e-06  Score=69.47  Aligned_cols=99  Identities=21%  Similarity=0.231  Sum_probs=69.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++++.+.+..                                   ..   ++
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~-----------------------------------~~---~~  195 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA-----------------------------------QP---IY  195 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS-----------------------------------CH---HH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc-----------------------------------CH---HH
Confidence            46899999999999999999999999999998764210                                   01   22


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+..+..++..  ++++.+++++.++  ....|.+.+..++  +..+ +.+|.||+|+|  ..|.
T Consensus       196 ~~~~~~~~gv~~--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-~~~D~vv~a~G--~~p~  252 (323)
T 3f8d_A          196 VETVKKKPNVEF--VLNSVVKEIKGDK--VVKQVVVENLKTG--EIKE-LNVNGVFIEIG--FDPP  252 (323)
T ss_dssp             HHHHHTCTTEEE--ECSEEEEEEEESS--SEEEEEEEETTTC--CEEE-EECSEEEECCC--EECC
T ss_pred             HHHHHhCCCcEE--EeCCEEEEEeccC--ceeEEEEEECCCC--ceEE-EEcCEEEEEEC--CCCC
Confidence            233333346544  8899999998753  4455777652222  3347 89999999999  4444

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.15  E-value=2.1e-06  Score=75.23  Aligned_cols=36  Identities=28%  Similarity=0.420  Sum_probs=33.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ..+||+|||||++|+++|..|+++|.+|+|+|+...
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~   40 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCC
Confidence            357999999999999999999999999999999753

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.15  E-value=1.3e-06  Score=78.60  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=31.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ++||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3799999999999999999999999999999876

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.14  E-value=1.6e-06  Score=76.73  Aligned_cols=87  Identities=14%  Similarity=0.066  Sum_probs=65.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                               . -..++.++
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~-------------------------------~-~~~~~~~~  193 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLER-------------------------------Q-LDRDGGLF  193 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT-------------------------------T-SCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh-------------------------------h-cCHHHHHH
Confidence            368999999999999999999999999999998753100                               0 01366777


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+..++.+++.  ++++.++++               +       .+ +.+|.||+|+|  ..|+
T Consensus       194 ~~~~l~~~gV~~--~~~~~v~~i---------------g-------~~-~~~D~vv~a~G--~~p~  232 (385)
T 3klj_A          194 LKDKLDRLGIKI--YTNSNFEEM---------------G-------DL-IRSSCVITAVG--VKPN  232 (385)
T ss_dssp             HHHHHHTTTCEE--ECSCCGGGC---------------H-------HH-HHHSEEEECCC--EEEC
T ss_pred             HHHHHHhCCCEE--EeCCEEEEc---------------C-------eE-EecCeEEECcC--cccC
Confidence            788888777665  777666544               1       45 89999999999  5444

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.13  E-value=6.9e-06  Score=71.03  Aligned_cols=100  Identities=14%  Similarity=0.186  Sum_probs=67.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|..|+.+|..|++.|.+|+++++.+.+.                           .   .     ..+.  
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~---------------------------~---~-----~~~~--  197 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR---------------------------A---S-----KIML--  197 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS---------------------------S---C-----TTHH--
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC---------------------------c---c-----HHHH--
Confidence            4689999999999999999999999999999876421                           0   0     0111  


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                       .+..++.+++.  +++++|++++.++  +...|.+.+..++  +..+ +.+|.||+|+|  ..|+.
T Consensus       198 -~~~~~~~gV~v--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~p~~  254 (335)
T 2a87_A          198 -DRARNNDKIRF--LTNHTVVAVDGDT--TVTGLRVRDTNTG--AETT-LPVTGVFVAIG--HEPRS  254 (335)
T ss_dssp             -HHHHHCTTEEE--ECSEEEEEEECSS--SCCEEEEEEETTS--CCEE-ECCSCEEECSC--EEECC
T ss_pred             -HHHhccCCcEE--EeCceeEEEecCC--cEeEEEEEEcCCC--ceEE-eecCEEEEccC--CccCh
Confidence             12234456544  8899999997654  2233444431111  2257 89999999999  55543

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.13  E-value=2e-06  Score=77.84  Aligned_cols=41  Identities=22%  Similarity=0.311  Sum_probs=37.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      ..+||+|||+|++|+++|..|++.|.+|+++|+++..||.+
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~   59 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGET   59 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            35799999999999999999999999999999999999843

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.11  E-value=6.8e-06  Score=75.26  Aligned_cols=99  Identities=14%  Similarity=0.142  Sum_probs=70.6

Q ss_pred             CcEEEECCcHHHHHHHHHHhhC--------------CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQ--------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSS   73 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~--------------g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (303)
                      ..++|||||+.|+.+|..|++.              ..+|+++|..+.+-                      +.+     
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il----------------------~~~-----  270 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL----------------------NMF-----  270 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS----------------------TTS-----
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc----------------------cCC-----
Confidence            3699999999999999998754              36899999987531                      111     


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           74 YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        74 ~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                            .+++.+++.+..++.|+++  ++++.|++++.+.    ..+.....+ +....++ +.+|.||.|+|.
T Consensus       271 ------~~~~~~~~~~~L~~~GV~v--~~~~~v~~v~~~~----~~~~~~~~d-g~~~~~~-i~ad~viwa~Gv  330 (502)
T 4g6h_A          271 ------EKKLSSYAQSHLENTSIKV--HLRTAVAKVEEKQ----LLAKTKHED-GKITEET-IPYGTLIWATGN  330 (502)
T ss_dssp             ------CHHHHHHHHHHHHHTTCEE--ETTEEEEEECSSE----EEEEEECTT-SCEEEEE-EECSEEEECCCE
T ss_pred             ------CHHHHHHHHHHHHhcceee--ecCceEEEEeCCc----eEEEEEecC-cccceee-eccCEEEEccCC
Confidence                  1378888899999999776  9999999985432    333332211 1112257 899999999994

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.09  E-value=1.1e-05  Score=68.78  Aligned_cols=99  Identities=17%  Similarity=0.150  Sum_probs=68.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|+.|+.+|..|.+.+.+|+++++.+.+.                                   ..   .+.
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~-----------------------------------~~---~~~  188 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFR-----------------------------------AA---PST  188 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB-----------------------------------SC---HHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC-----------------------------------CC---HHH
Confidence            4689999999999999999999999999999876421                                   00   122


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+..++.+++.  ++++.+.++..++ +....|.+... ++  +..+ +.+|.||+|+|  ..|+
T Consensus       189 ~~~~~~~~gv~~--~~~~~v~~i~~~~-~~~~~v~~~~~-~g--~~~~-~~~D~vv~a~G--~~p~  245 (315)
T 3r9u_A          189 VEKVKKNEKIEL--ITSASVDEVYGDK-MGVAGVKVKLK-DG--SIRD-LNVPGIFTFVG--LNVR  245 (315)
T ss_dssp             HHHHHHCTTEEE--ECSCEEEEEEEET-TEEEEEEEECT-TS--CEEE-ECCSCEEECSC--EEEC
T ss_pred             HHHHHhcCCeEE--EeCcEEEEEEcCC-CcEEEEEEEcC-CC--CeEE-eecCeEEEEEc--CCCC
Confidence            333344556554  8899999998764 12233555411 11  3357 89999999999  4444

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.04  E-value=3.4e-06  Score=79.22  Aligned_cols=40  Identities=18%  Similarity=0.222  Sum_probs=37.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+..||.+
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~   85 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   85 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence            5799999999999999999999999999999999888754

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.03  E-value=4.8e-06  Score=78.91  Aligned_cols=41  Identities=29%  Similarity=0.363  Sum_probs=37.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      ..++|+|||||++|+++|..|.+.|++|+|+|+.+.+||.+
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~  146 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV  146 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence            35799999999999999999999999999999999888854

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.03  E-value=2.6e-05  Score=66.53  Aligned_cols=34  Identities=24%  Similarity=0.407  Sum_probs=31.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .++|+|||+|..|+.+|..|++.|.+|+++++..
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~  185 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD  185 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeecccc
Confidence            4689999999999999999999999999999765

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.00  E-value=5.9e-06  Score=79.98  Aligned_cols=41  Identities=29%  Similarity=0.363  Sum_probs=37.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      ..++|+|||||++||++|..|.+.|++|+|+|+.+.+||.+
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~  317 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV  317 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCce
Confidence            35799999999999999999999999999999999998854

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.99  E-value=3.6e-05  Score=70.81  Aligned_cols=99  Identities=20%  Similarity=0.195  Sum_probs=68.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .++|+|||+|.+|+.+|..|++.|.+|+++++.+.+.                           +       +     .+
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~---------------------------~-------~-----~~  395 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK---------------------------A-------D-----QV  395 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC---------------------------S-------C-----HH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC---------------------------c-------C-----HH
Confidence            4689999999999999999999999999999876421                           0       0     12


Q ss_pred             HHHHHHH-cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      +.+.+++ .++.  +++++.++++..++ +....|.+.+..++  +..+ +.+|.||+|+|  ..|+
T Consensus       396 l~~~l~~~~gV~--v~~~~~v~~i~~~~-~~v~~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~pn  454 (521)
T 1hyu_A          396 LQDKVRSLKNVD--IILNAQTTEVKGDG-SKVVGLEYRDRVSG--DIHS-VALAGIFVQIG--LLPN  454 (521)
T ss_dssp             HHHHHTTCTTEE--EECSEEEEEEEECS-SSEEEEEEEETTTC--CEEE-EECSEEEECCC--EEES
T ss_pred             HHHHHhcCCCcE--EEeCCEEEEEEcCC-CcEEEEEEEeCCCC--ceEE-EEcCEEEECcC--CCCC
Confidence            3333333 3544  48899999997653 22224566543222  3357 89999999999  4444

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.99  E-value=1.4e-05  Score=76.03  Aligned_cols=97  Identities=11%  Similarity=0.047  Sum_probs=68.6

Q ss_pred             CCcEEEEC--CcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            7 GVEVIMVG--AGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         7 ~~~vvIIG--aG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      ..+|+|||  +|..|+.+|..|.+.|.+|+++++.+.+.....                                ...+.
T Consensus       523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~--------------------------------~~~~~  570 (690)
T 3k30_A          523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTN--------------------------------NTFEV  570 (690)
T ss_dssp             SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGG--------------------------------GGTCH
T ss_pred             CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccc--------------------------------cchhH
Confidence            35799999  999999999999999999999998775321100                                00123


Q ss_pred             HHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (303)
Q Consensus        85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG  146 (303)
                      ..+.+.+++.+++.  +++++|++++.+.    ..+......    +..+ +.+|.||+|+|
T Consensus       571 ~~l~~~l~~~GV~i--~~~~~V~~i~~~~----~~v~~~~~~----~~~~-i~aD~VV~A~G  621 (690)
T 3k30_A          571 NRIQRRLIENGVAR--VTDHAVVAVGAGG----VTVRDTYAS----IERE-LECDAVVMVTA  621 (690)
T ss_dssp             HHHHHHHHHTTCEE--EESEEEEEEETTE----EEEEETTTC----CEEE-EECSEEEEESC
T ss_pred             HHHHHHHHHCCCEE--EcCcEEEEEECCe----EEEEEccCC----eEEE-EECCEEEECCC
Confidence            55666667778766  9999999986432    334332111    1257 89999999999

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.96  E-value=3.8e-06  Score=73.21  Aligned_cols=34  Identities=26%  Similarity=0.516  Sum_probs=31.5

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCC------CCeEEEecCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQS------IPYVILERENC   41 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g------~~v~iie~~~~   41 (303)
                      +||+|||||++|+++|..|+++|      .+|+|+|+...
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~   40 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT   40 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence            48999999999999999999998      89999999863

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.95  E-value=7.5e-06  Score=69.19  Aligned_cols=88  Identities=6%  Similarity=-0.065  Sum_probs=63.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .++|+|||+|+.|+.+|..|.+.| +|+++++.+.                                        .+.+.
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~----------------------------------------~~~~~  179 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV----------------------------------------EPDAD  179 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC----------------------------------------CCCHH
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC----------------------------------------CCCHH
Confidence            468999999999999999999999 9999987642                                        00123


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      +.+.+++.++..  + +++|++++.+   +  .|.+.++       .+ +.+|.||+|+|  ..|+.
T Consensus       180 ~~~~l~~~gv~i--~-~~~v~~i~~~---~--~v~~~~g-------~~-~~~D~vi~a~G--~~p~~  228 (297)
T 3fbs_A          180 QHALLAARGVRV--E-TTRIREIAGH---A--DVVLADG-------RS-IALAGLFTQPK--LRITV  228 (297)
T ss_dssp             HHHHHHHTTCEE--E-CSCEEEEETT---E--EEEETTS-------CE-EEESEEEECCE--EECCC
T ss_pred             HHHHHHHCCcEE--E-cceeeeeecC---C--eEEeCCC-------CE-EEEEEEEEccC--cccCc
Confidence            445566677765  5 3778877532   1  5666654       56 89999999999  44443

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.90  E-value=1.4e-05  Score=69.99  Aligned_cols=36  Identities=28%  Similarity=0.278  Sum_probs=33.1

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g   43 (303)
                      +||+|||||++|+.+|..|++.|.+|+|+|+++..+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~   37 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRM   37 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSC
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcC
Confidence            699999999999999999999999999999987433

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.78  E-value=2.7e-05  Score=72.69  Aligned_cols=45  Identities=20%  Similarity=0.360  Sum_probs=41.6

Q ss_pred             CCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc
Q 022090            4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (303)
Q Consensus         4 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~   48 (303)
                      .+..+||+|+|+|..|..+|..|++.|.+|+++|++++.||.|..
T Consensus         5 ~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~   49 (650)
T 1vg0_A            5 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS   49 (650)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCcccc
Confidence            345699999999999999999999999999999999999998864

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.78  E-value=0.00015  Score=71.65  Aligned_cols=97  Identities=12%  Similarity=0.126  Sum_probs=69.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      ..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+.                                    . .    
T Consensus       284 gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~------------------------------------~-~----  322 (965)
T 2gag_A          284 GARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS------------------------------------A-A----  322 (965)
T ss_dssp             CSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC------------------------------------H-H----
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc------------------------------------h-h----
Confidence            3689999999999999999999999999999876421                                    0 1    


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEee--cC--CCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN--LL--SPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~--~~--~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                       .+.+++.++.+  ++++.|+++..++.+....|.+.+  ..  ++  +..+ +.+|.||+|+|  ..|+
T Consensus       323 -~~~l~~~GV~v--~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G--~~~~-i~~D~Vv~a~G--~~P~  384 (965)
T 2gag_A          323 -AAQAVADGVQV--ISGSVVVDTEADENGELSAIVVAELDEARELG--GTQR-FEADVLAVAGG--FNPV  384 (965)
T ss_dssp             -HHHHHHTTCCE--EETEEEEEEEECTTSCEEEEEEEEECTTCCEE--EEEE-EECSEEEEECC--EEEC
T ss_pred             -HHHHHhCCeEE--EeCCEeEEEeccCCCCEEEEEEEeccccCCCC--ceEE-EEcCEEEECCC--cCcC
Confidence             23456678776  999999999874112333455543  10  00  2357 89999999999  5554

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.77  E-value=7.6e-05  Score=67.60  Aligned_cols=35  Identities=14%  Similarity=0.051  Sum_probs=32.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            57899999999999999999999999999998764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.73  E-value=0.00015  Score=61.83  Aligned_cols=35  Identities=17%  Similarity=0.305  Sum_probs=32.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  179 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDE  179 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccc
Confidence            46899999999999999999999999999998764

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.62  E-value=0.00017  Score=65.12  Aligned_cols=36  Identities=22%  Similarity=0.316  Sum_probs=31.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCC-eEEEecCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIP-YVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~~~   41 (303)
                      ..++|+|||||..|+-+|..+.+.|.+ |+++++.+.
T Consensus       263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR  299 (456)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence            356899999999999999999999985 999988764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.62  E-value=0.00013  Score=65.60  Aligned_cols=35  Identities=17%  Similarity=0.078  Sum_probs=32.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCC-eEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~~~   41 (303)
                      .++|+|||+|.+|+-+|..|++.+.+ |+++++.+.
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~  247 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGG  247 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCC
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCC
Confidence            46899999999999999999999998 999998764

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.61  E-value=0.00029  Score=65.04  Aligned_cols=35  Identities=20%  Similarity=0.328  Sum_probs=32.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .++|+|||+|.+|+.+|..|++.+.+|+++++.+.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            57899999999999999999999999999999875

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.60  E-value=1.8e-05  Score=74.84  Aligned_cols=36  Identities=25%  Similarity=0.418  Sum_probs=33.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC--------CCeEEEecCC-CC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS--------IPYVILEREN-CY   42 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g--------~~v~iie~~~-~~   42 (303)
                      .++|+|||||++||++|..|.+.|        ++|+|+|+++ .+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            468999999999999999999998        9999999998 88

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.58  E-value=0.00021  Score=67.85  Aligned_cols=29  Identities=31%  Similarity=0.396  Sum_probs=25.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEE
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVI   35 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~i   35 (303)
                      ..+|+|||||..|+.+|..|++.|.+|++
T Consensus       494 ~~~VvVIGgG~~g~E~A~~l~~~G~~vtv  522 (671)
T 1ps9_A          494 GNKVAIIGCGGIGFDTAMYLSQPGESTSQ  522 (671)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCGGG
T ss_pred             CCeEEEECCChhHHHHHHHHHhcCCCccc
Confidence            46899999999999999999999877654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.56  E-value=7.7e-05  Score=64.57  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=29.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|+|||+|.+|+.+|..|++.+ +|+++.+..
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            468999999999999999999998 699998763

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.54  E-value=5.2e-05  Score=69.74  Aligned_cols=36  Identities=25%  Similarity=0.407  Sum_probs=32.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhh-CCCCeEEEecCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSL-QSIPYVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~-~g~~v~iie~~~~   41 (303)
                      +.||++|||+|.+|+.+|.+|++ .+++|+|+|+...
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            36899999999999999999998 5789999998753

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.53  E-value=6.9e-05  Score=69.36  Aligned_cols=36  Identities=33%  Similarity=0.444  Sum_probs=33.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ..+|++|||+|++|+.+|.+|++.|.+|+++|+...
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            468999999999999999999999999999999753

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.52  E-value=0.00061  Score=61.57  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=30.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHh--------------------hCCC-CeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLS--------------------LQSI-PYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~--------------------~~g~-~v~iie~~~~   41 (303)
                      ..+|+|||+|..|+.+|..|+                    +.|. +|+|+++...
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            468999999999999999999                    5687 6999998764

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.47  E-value=0.00033  Score=62.86  Aligned_cols=103  Identities=11%  Similarity=0.000  Sum_probs=63.7

Q ss_pred             CcEEEECCcHHH------HHHH----HHHhhCCCC-----eEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCC
Q 022090            8 VEVIMVGAGTSG------LATA----ACLSLQSIP-----YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPS   72 (303)
Q Consensus         8 ~~vvIIGaG~aG------l~~A----~~l~~~g~~-----v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (303)
                      .+++|||+|+.|      +..|    ..|.+.|.+     |+++++.+.++...                          
T Consensus       150 ~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~--------------------------  203 (437)
T 3sx6_A          150 PGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLG--------------------------  203 (437)
T ss_dssp             CCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTT--------------------------
T ss_pred             CCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccc--------------------------
Confidence            467999997654      4444    667777764     99999887543110                          


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           73 SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        73 ~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                       .+.++   ++...+.+..++.+++.  ++++.|++++.+    ...+.....++...+..+ +.+|.+++|+|.
T Consensus       204 -l~~~~---~~~~~~~~~l~~~gI~~--~~~~~v~~v~~~----~v~~~~~~~~g~~~~~~~-i~~D~vv~~~g~  267 (437)
T 3sx6_A          204 -IQGVG---DSKGILTKGLKEEGIEA--YTNCKVTKVEDN----KMYVTQVDEKGETIKEMV-LPVKFGMMIPAF  267 (437)
T ss_dssp             -TTCCT---THHHHHHHHHHHTTCEE--ECSEEEEEEETT----EEEEEEECTTSCEEEEEE-EECSEEEEECCE
T ss_pred             -cCcch---HHHHHHHHHHHHCCCEE--EcCCEEEEEECC----eEEEEecccCCccccceE-EEEeEEEEcCCC
Confidence             01111   24566777778888776  899999988632    233333211110001267 899999999984

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.40  E-value=0.00063  Score=61.39  Aligned_cols=36  Identities=28%  Similarity=0.440  Sum_probs=30.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC--------------------CC-CeEEEecCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ--------------------SI-PYVILERENCY   42 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~--------------------g~-~v~iie~~~~~   42 (303)
                      ..+|+|||+|..|+.+|..|++.                    |. +|+++++...+
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            46899999999999999999874                    54 89999987643

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.37  E-value=0.00013  Score=67.72  Aligned_cols=36  Identities=25%  Similarity=0.411  Sum_probs=33.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCC-CCeEEEecCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQS-IPYVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~~   41 (303)
                      ..+|++|||||.||+.+|.+|++.+ .+|+|+|+...
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            4589999999999999999999997 79999999865

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.36  E-value=0.00034  Score=66.94  Aligned_cols=104  Identities=10%  Similarity=0.030  Sum_probs=67.1

Q ss_pred             CCcEEEEC--CcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            7 GVEVIMVG--AGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         7 ~~~vvIIG--aG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      .++|+|||  +|..|+.+|..|++.|.+|+++++.+ +.....                             +..  . .
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~-----------------------------~~~--~-~  574 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMH-----------------------------FTL--E-Y  574 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHH-----------------------------HTT--C-H
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccc-----------------------------ccc--c-H
Confidence            46899999  99999999999999999999999876 421000                             000  0 2


Q ss_pred             HHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEe--ecCC------------CCceeEEEEeeCEEEEccCCCCC
Q 022090           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS--NLLS------------PGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~--~~~~------------~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      ..+.+.+++.|+..  ++++.+++++.+    ...+...  ++..            ..+++.+ +.+|.||+|+|  ..
T Consensus       575 ~~~~~~l~~~GV~i--~~~~~v~~i~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~aD~Vv~a~G--~~  645 (729)
T 1o94_A          575 PNMMRRLHELHVEE--LGDHFCSRIEPG----RMEIYNIWGDGSKRTYRGPGVSPRDANTSHRW-IEFDSLVLVTG--RH  645 (729)
T ss_dssp             HHHHHHHHHTTCEE--ECSEEEEEEETT----EEEEEETTCSCSCCCCCCTTSCSSCCCCCCEE-EECSEEEEESC--EE
T ss_pred             HHHHHHHHhCCCEE--EcCcEEEEEECC----eEEEEEecCCceEEecccccccccccCCccee-eeCCEEEECCC--CC
Confidence            34455556678766  899999988632    2333321  1100            0002246 79999999999  44


Q ss_pred             CC
Q 022090          151 PF  152 (303)
Q Consensus       151 p~  152 (303)
                      |+
T Consensus       646 p~  647 (729)
T 1o94_A          646 SE  647 (729)
T ss_dssp             EC
T ss_pred             CC
Confidence            43

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.35  E-value=9e-05  Score=68.39  Aligned_cols=35  Identities=37%  Similarity=0.482  Sum_probs=32.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~   42 (303)
                      .+|++|||+|.+|+.+|.+|++ |.+|+|+|+....
T Consensus        26 ~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~   60 (536)
T 1ju2_A           26 SYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred             cccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence            4899999999999999999999 9999999998654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.29  E-value=0.00027  Score=53.80  Aligned_cols=41  Identities=17%  Similarity=0.307  Sum_probs=33.5

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      |+......+|+|||+|..|..+|..|.+.|.+|+++|+++.
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            44445567899999999999999999999999999998753

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.27  E-value=0.0021  Score=63.88  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=31.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      ..+|+|||||..|+.+|..|.+.|. +|+++++.+
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            3589999999999999999999997 899999875

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.26  E-value=0.00024  Score=65.06  Aligned_cols=38  Identities=18%  Similarity=0.306  Sum_probs=34.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA   43 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g   43 (303)
                      ..+|++|||+|++|+.+|..|.+.|.+|+++|+....+
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            35799999999999999999999999999999987543

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.19  E-value=0.00025  Score=65.87  Aligned_cols=35  Identities=34%  Similarity=0.562  Sum_probs=32.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhC-CCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~iie~~~   40 (303)
                      ..+|++|||||.||+.+|.+|++. +.+|+|+|+..
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            358999999999999999999975 88999999976

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.14  E-value=0.00035  Score=63.99  Aligned_cols=36  Identities=28%  Similarity=0.434  Sum_probs=33.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ..+|++|||+|++|+.+|.+|.+.|.+|+++|+...
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            358999999999999999999999999999998753

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.12  E-value=0.00034  Score=54.49  Aligned_cols=32  Identities=38%  Similarity=0.483  Sum_probs=30.9

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++|||+|.+|+++|..|++.|.+|+++++++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            69999999999999999999999999999987

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.04  E-value=0.00053  Score=63.96  Aligned_cols=36  Identities=28%  Similarity=0.438  Sum_probs=32.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhh-CCCCeEEEecCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSL-QSIPYVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~-~g~~v~iie~~~~   41 (303)
                      ..+|++|||+|++|+.+|.+|++ .|.+|+++|+...
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~   59 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCc
Confidence            34799999999999999999999 7999999998754

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.03  E-value=0.00025  Score=65.73  Aligned_cols=36  Identities=28%  Similarity=0.418  Sum_probs=32.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhh-CCCCeEEEecCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSL-QSIPYVILERENCY   42 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~-~g~~v~iie~~~~~   42 (303)
                      .+|++|||||.+|+.+|.+|++ .+.+|+|+|+....
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            3799999999999999999998 68999999987643

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.94  E-value=0.00059  Score=63.08  Aligned_cols=36  Identities=31%  Similarity=0.412  Sum_probs=32.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC-CCCeEEEecCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCY   42 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~-g~~v~iie~~~~~   42 (303)
                      .+|++|||+|++|+.+|.+|++. |.+|+++|+....
T Consensus        13 ~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            47999999999999999999998 8999999997543

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=96.90  E-value=0.0025  Score=56.51  Aligned_cols=51  Identities=2%  Similarity=-0.054  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        81 ~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      ..+.+.+.+.+++.+++.  +++++|++++.+    .  |.+.++       ++ +++|.||+|+|.
T Consensus       218 ~~~~~~~~~~l~~~gV~~--~~~~~v~~i~~~----~--v~~~~g-------~~-~~~D~vi~a~G~  268 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKL--VHNFKIKEIREH----E--IVDEKG-------NT-IPADITILLPPY  268 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEE--ECSCCEEEECSS----E--EEETTS-------CE-EECSEEEEECCE
T ss_pred             HHHHHHHHHHHHHCCCEE--EcCCceEEECCC----e--EEECCC-------CE-EeeeEEEECCCC
Confidence            367777888888888776  889999888532    1  566554       57 899999999994

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=96.83  E-value=0.00067  Score=55.77  Aligned_cols=32  Identities=22%  Similarity=0.410  Sum_probs=30.6

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .|+|||+|++|+-+|..|++.|.+|+++++++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            59999999999999999999999999999876

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.78  E-value=0.0024  Score=47.49  Aligned_cols=34  Identities=26%  Similarity=0.403  Sum_probs=31.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +.+|+|||+|..|..+|..|.+.|++|+++|+++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4589999999999999999999999999999975

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.74  E-value=0.0021  Score=47.80  Aligned_cols=34  Identities=15%  Similarity=0.312  Sum_probs=31.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +.+|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4689999999999999999999999999999865

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.72  E-value=0.013  Score=53.38  Aligned_cols=36  Identities=14%  Similarity=0.230  Sum_probs=30.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~   41 (303)
                      ..++|+|||+|.+|.-++..|++.  +.+|+++-|.+.
T Consensus       245 ~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~  282 (501)
T 4b63_A          245 KPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSA  282 (501)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSS
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            356899999999999999999875  678999988753

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.56  E-value=0.0038  Score=47.14  Aligned_cols=34  Identities=12%  Similarity=0.107  Sum_probs=31.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|+|+|+|..|...|..|.+.|++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            3589999999999999999999999999999864

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.52  E-value=0.0028  Score=46.79  Aligned_cols=34  Identities=26%  Similarity=0.480  Sum_probs=30.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|+|||+|..|..+|..|.+.|++|+++|++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3589999999999999999999999999999864

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=96.43  E-value=0.002  Score=52.46  Aligned_cols=32  Identities=41%  Similarity=0.573  Sum_probs=30.5

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeec
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~  218 (303)
                      .+|+|||+|.+|+++|..|++.|.+|+++++.
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~   35 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQS   35 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecC
Confidence            47999999999999999999999999999997

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=96.43  E-value=0.0014  Score=59.73  Aligned_cols=33  Identities=24%  Similarity=0.409  Sum_probs=30.7

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      |+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~   34 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRD   34 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCC
Confidence            689999999999999999999999999999865

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.38  E-value=0.0032  Score=44.87  Aligned_cols=34  Identities=26%  Similarity=0.334  Sum_probs=31.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC-CCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~   40 (303)
                      ..+|+|+|+|..|..++..|.+.| ++|++++++.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            458999999999999999999999 8999999864

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.35  E-value=0.0038  Score=53.23  Aligned_cols=39  Identities=23%  Similarity=0.314  Sum_probs=31.3

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      |+. +...+|+|||+|..|...|..++..|++|+++|.++
T Consensus         1 Ma~-p~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            1 MAS-PAAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             -------CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCC-CCCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            543 335689999999999999999999999999999865

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=96.31  E-value=0.019  Score=48.44  Aligned_cols=34  Identities=18%  Similarity=0.146  Sum_probs=26.8

Q ss_pred             CCcEEEECCcH-HHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGT-SGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~-aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .++++|||||. +++.+|..+.+.+.+|+++++.+
T Consensus       146 ~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~  180 (304)
T 4fk1_A          146 DQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGN  180 (304)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSC
T ss_pred             CCceeeecCCCchhhhHHHHHHhCCceEEEEeccc
Confidence            35677777775 57888888888899999997754

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.25  E-value=0.0058  Score=45.20  Aligned_cols=34  Identities=12%  Similarity=0.148  Sum_probs=31.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|+|+|+|..|..+|..|.+.|.+|+++|++.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4579999999999999999999999999999864

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=96.12  E-value=0.0032  Score=55.40  Aligned_cols=32  Identities=28%  Similarity=0.471  Sum_probs=30.7

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~   34 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNS   34 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            79999999999999999999999999999876

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=96.05  E-value=0.0033  Score=56.14  Aligned_cols=34  Identities=24%  Similarity=0.468  Sum_probs=31.5

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            4689999999999999999999999999999876

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.04  E-value=0.0093  Score=46.38  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=31.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC-CCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ-SIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~-g~~v~iie~~~   40 (303)
                      ..+|+|||+|..|..+|..|.+. |++|+++|+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            35899999999999999999999 99999999875

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.03  E-value=0.0059  Score=46.18  Aligned_cols=39  Identities=21%  Similarity=0.246  Sum_probs=33.1

Q ss_pred             CCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          181 GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       181 ~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +....+++++|+|+|.+|..++..|...|.+|+++.|++
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            344557899999999999999999999999999998875

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.03  E-value=0.0059  Score=51.79  Aligned_cols=40  Identities=18%  Similarity=0.173  Sum_probs=31.9

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      |+......+|.|||.|..|...|..|++.|++|+++|+++
T Consensus         1 M~~~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            1 MSLTGTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            5444445689999999999999999999999999999875

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=96.02  E-value=0.004  Score=54.40  Aligned_cols=32  Identities=38%  Similarity=0.501  Sum_probs=30.5

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .|+|||+|++|+-+|..|++.|.+|++++|++
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~   37 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRP   37 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999876

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=95.93  E-value=0.0051  Score=51.63  Aligned_cols=33  Identities=24%  Similarity=0.593  Sum_probs=31.0

Q ss_pred             CeEEEECCCccHHHHHHHHhhc-cCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANH-AAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~-g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+.+|..|++. |.+|+++++.+
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~   73 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   73 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4799999999999999999997 99999999986

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=95.87  E-value=0.0061  Score=53.86  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=32.3

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +..+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~   56 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVK   56 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            34689999999999999999999999999999987

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=95.85  E-value=0.0063  Score=55.47  Aligned_cols=35  Identities=34%  Similarity=0.495  Sum_probs=32.8

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ...+|+|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~  125 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRI  125 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEecc
Confidence            45799999999999999999999999999999986

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.84  E-value=0.013  Score=49.77  Aligned_cols=35  Identities=26%  Similarity=0.291  Sum_probs=32.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ...+|.|||.|..|...|..|.+.|++|++++++.
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45689999999999999999999999999999875

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.81  E-value=0.0098  Score=47.74  Aligned_cols=32  Identities=22%  Similarity=0.387  Sum_probs=30.5

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +|+|||+|..|..+|..|.+.|++|+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            69999999999999999999999999999875

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=95.74  E-value=0.0073  Score=53.21  Aligned_cols=38  Identities=24%  Similarity=0.363  Sum_probs=32.5

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhcc--CceEEEeecCeee
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSPVHV  222 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g--~~vt~~~r~~~~~  222 (303)
                      .+|+|+|||+|..|+.+|..|.+.+  .+||++++++.+.
T Consensus         1 aGKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~   40 (401)
T 3vrd_B            1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYY   40 (401)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEE
T ss_pred             CcCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCC
Confidence            3799999999999999999998876  4799999988543

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=95.72  E-value=0.0071  Score=53.26  Aligned_cols=35  Identities=31%  Similarity=0.433  Sum_probs=32.5

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecCe
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~  220 (303)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   39 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            46899999999999999999999999999999873

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.71  E-value=0.014  Score=47.09  Aligned_cols=34  Identities=18%  Similarity=0.279  Sum_probs=31.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~   39 (303)
                      ..++|+|||||..|...|..|.+.|.+|+++++.
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            3578999999999999999999999999999865

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=95.70  E-value=0.0081  Score=52.90  Aligned_cols=34  Identities=29%  Similarity=0.457  Sum_probs=32.1

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   59 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN   59 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999999986

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=95.70  E-value=0.0066  Score=54.01  Aligned_cols=34  Identities=18%  Similarity=0.479  Sum_probs=31.5

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~   60 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHAR   60 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4589999999999999999999999999999886

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.68  E-value=0.012  Score=49.38  Aligned_cols=34  Identities=15%  Similarity=0.200  Sum_probs=31.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|.|||+|..|...|..|++.|++|+++|+++
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3689999999999999999999999999999875

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=95.65  E-value=0.0078  Score=52.80  Aligned_cols=33  Identities=33%  Similarity=0.402  Sum_probs=31.0

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ++|+|||+|..|+++|..+++.|.+|+++++++
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            479999999999999999999999999999876

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=95.63  E-value=0.0078  Score=52.61  Aligned_cols=34  Identities=24%  Similarity=0.352  Sum_probs=32.0

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~   44 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSS   44 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            4689999999999999999999999999999876

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.61  E-value=0.012  Score=51.65  Aligned_cols=36  Identities=17%  Similarity=0.255  Sum_probs=32.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ...+|+|||+|.+|+.+|..|...|.+|+++|++..
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            357899999999999999999999999999998763

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.60  E-value=0.013  Score=49.57  Aligned_cols=34  Identities=18%  Similarity=0.299  Sum_probs=31.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|.|||+|..|...|..|++.|++|+++|++.
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3579999999999999999999999999999864

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=95.59  E-value=0.0082  Score=52.74  Aligned_cols=33  Identities=27%  Similarity=0.481  Sum_probs=30.9

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~   37 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHT   37 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            379999999999999999999999999999875

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=95.59  E-value=0.0078  Score=53.40  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=30.7

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ++|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA   33 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            379999999999999999999999999999864

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=95.56  E-value=0.0079  Score=51.97  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=31.1

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~   37 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE   37 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999999999999985

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.56  E-value=0.014  Score=50.13  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=31.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      +.+|+|||+|..|.++|..|+..|+ +|+++|.+.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            4589999999999999999999998 999999875

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=95.54  E-value=0.016  Score=49.99  Aligned_cols=40  Identities=18%  Similarity=0.145  Sum_probs=33.2

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      |+..+...+|.|||.|..|-+.|..|.+.|++|+++|+++
T Consensus         2 m~~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            2 MTTKDISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             ----CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCccCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5555556789999999999999999999999999999875

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=95.52  E-value=0.0099  Score=53.98  Aligned_cols=35  Identities=29%  Similarity=0.457  Sum_probs=32.2

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+.+|+|||+|.+|+.+|..|++.|.+|+++++++
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~   66 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   66 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence            35799999999999999999999999999998875

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=95.51  E-value=0.008  Score=53.28  Aligned_cols=32  Identities=25%  Similarity=0.448  Sum_probs=30.3

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (425)
T 3ka7_A            2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLP   33 (425)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCceEEEeCCC
Confidence            79999999999999999999999999999874

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.48  E-value=0.013  Score=52.46  Aligned_cols=36  Identities=17%  Similarity=0.390  Sum_probs=32.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~   42 (303)
                      .++|+|||.|.+|+++|..|+++|++|+++|.....
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            468999999999999999999999999999987643

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=95.48  E-value=0.0077  Score=52.51  Aligned_cols=33  Identities=30%  Similarity=0.393  Sum_probs=31.1

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~   50 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   50 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            589999999999999999999999999999865

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=95.46  E-value=0.0073  Score=52.47  Aligned_cols=33  Identities=12%  Similarity=0.230  Sum_probs=30.8

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~   35 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM   35 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            379999999999999999999999999999875

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=95.39  E-value=0.0097  Score=51.98  Aligned_cols=33  Identities=39%  Similarity=0.508  Sum_probs=30.8

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~   36 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999999999999865

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.38  E-value=0.014  Score=51.93  Aligned_cols=34  Identities=18%  Similarity=0.285  Sum_probs=30.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ...+|.|||.|..|+..|..|++ |++|+++|+++
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            34689999999999999999998 99999999875

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.36  E-value=0.015  Score=52.28  Aligned_cols=35  Identities=20%  Similarity=0.229  Sum_probs=32.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..++|+|||.|.+|+++|..|.++|++|+++|.+.
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            35789999999999999999999999999999865

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.36  E-value=0.013  Score=51.06  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=32.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ...+|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45789999999999999999999999999999875

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=95.35  E-value=0.0093  Score=52.34  Aligned_cols=33  Identities=21%  Similarity=0.402  Sum_probs=31.1

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   35 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            379999999999999999999999999999876

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=95.35  E-value=0.01  Score=52.22  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=31.3

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~   39 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQAR   39 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            479999999999999999999999999999986

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=95.34  E-value=0.01  Score=51.97  Aligned_cols=33  Identities=24%  Similarity=0.431  Sum_probs=30.8

Q ss_pred             CeEEEECCCccHHHHHHHHhhc--cCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANH--AAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~--g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.  |.+|+++++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~   35 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKND   35 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence            3699999999999999999999  99999999876

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=95.31  E-value=0.01  Score=51.77  Aligned_cols=33  Identities=24%  Similarity=0.508  Sum_probs=31.0

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus         6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            579999999999999999999999999999874

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=95.31  E-value=0.01  Score=52.49  Aligned_cols=33  Identities=27%  Similarity=0.392  Sum_probs=31.1

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            479999999999999999999999999999875

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=95.27  E-value=0.018  Score=51.28  Aligned_cols=36  Identities=33%  Similarity=0.530  Sum_probs=32.0

Q ss_pred             CeEEEECCCccHHHHHHHHhhcc--CceEEEeecCeee
Q 022090          187 KNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSPVHV  222 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g--~~vt~~~r~~~~~  222 (303)
                      |+|+|||+|..|+.+|..|.+.+  .+||++++++.+.
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~   40 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG   40 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc
Confidence            68999999999999999999876  6799999998443

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=95.27  E-value=0.012  Score=50.97  Aligned_cols=33  Identities=36%  Similarity=0.494  Sum_probs=30.8

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            589999999999999999999999999999853

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.27  E-value=0.02  Score=45.65  Aligned_cols=35  Identities=17%  Similarity=0.327  Sum_probs=31.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ..+|.|||+|..|.+.|..|.+.|++|++++++..
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998764

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.26  E-value=0.018  Score=49.25  Aligned_cols=35  Identities=23%  Similarity=0.408  Sum_probs=30.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~   40 (303)
                      .+.+|+|||+|..|.++|..|+..+.  +++++|.+.
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            35689999999999999999999987  899999764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.25  E-value=0.016  Score=46.63  Aligned_cols=37  Identities=24%  Similarity=0.356  Sum_probs=33.1

Q ss_pred             CCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+.+++|+|||+|.+|...+..|.+.|.+|+++.+..
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~   64 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV   64 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            3568999999999999999999999999999997643

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=95.22  E-value=0.013  Score=51.80  Aligned_cols=33  Identities=27%  Similarity=0.470  Sum_probs=31.4

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCc-eEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~-vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+ |++++|.+
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            5899999999999999999999999 99999986

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.21  E-value=0.018  Score=49.17  Aligned_cols=33  Identities=18%  Similarity=0.363  Sum_probs=31.0

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|+|||+|..|.+.|..|++.|.+|++++|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            489999999999999999999999999999865

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.21  E-value=0.018  Score=49.04  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=31.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~   40 (303)
                      .+.+|+|||+|..|...|..|+..|.  +|+++|++.
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            34689999999999999999999998  999999864

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.20  E-value=0.013  Score=48.73  Aligned_cols=35  Identities=14%  Similarity=0.289  Sum_probs=32.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+.|+|||+|-.|...+..|.+.|.+|++++++.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            35789999999999999999999999999999764

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=95.19  E-value=0.011  Score=52.46  Aligned_cols=32  Identities=38%  Similarity=0.531  Sum_probs=30.1

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~   34 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE   34 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            69999999999999999999999999999854

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.18  E-value=0.019  Score=48.43  Aligned_cols=34  Identities=21%  Similarity=0.352  Sum_probs=31.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+++|.|||+|..|...|..|+ .|++|+++|+++
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            3589999999999999999999 999999999875

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=95.14  E-value=0.013  Score=53.25  Aligned_cols=33  Identities=27%  Similarity=0.393  Sum_probs=29.8

Q ss_pred             CeEEEECCCccHHHHHHHHhhc-cCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANH-AAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~-g~~vt~~~r~~  219 (303)
                      -.|+|||+|.+|+-+|..|++. |.+|+++++++
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~   44 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE   44 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCC
Confidence            4799999999999999999985 99999998765

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=95.13  E-value=0.012  Score=53.09  Aligned_cols=33  Identities=33%  Similarity=0.519  Sum_probs=30.8

Q ss_pred             CeEEEECCCccHHHHHHHHhhccC--ceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAA--KTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~--~vt~~~r~~  219 (303)
                      ++|+|||+|.+|+-+|..|++.|.  +|+++++++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~   37 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE   37 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence            589999999999999999999999  999999865

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.12  E-value=0.018  Score=48.57  Aligned_cols=35  Identities=11%  Similarity=0.090  Sum_probs=32.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ..+|.|||.|..|...|..|++.|++|+++|+++.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            35899999999999999999999999999998864

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=95.11  E-value=0.022  Score=49.52  Aligned_cols=34  Identities=15%  Similarity=0.267  Sum_probs=31.7

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ++|+|||||..|..++..+++.|++++++|.++.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            6899999999999999999999999999998764

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.10  E-value=0.022  Score=48.42  Aligned_cols=35  Identities=23%  Similarity=0.231  Sum_probs=32.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      +.+|.|||.|..|...|..|++.|++|+++|++..
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999998753

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=95.10  E-value=0.015  Score=51.56  Aligned_cols=34  Identities=15%  Similarity=0.433  Sum_probs=31.6

Q ss_pred             CCeEEEECCCccHHHHHHHHhhcc-CceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g-~~vt~~~r~~  219 (303)
                      ..+|+|||+|.+|+-+|..|++.| .+|+++++++
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~   40 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTD   40 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            468999999999999999999999 8999999875

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=95.10  E-value=0.013  Score=51.82  Aligned_cols=33  Identities=18%  Similarity=0.360  Sum_probs=31.1

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+.+|..+++.|.+|+++++.+
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~   37 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK   37 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            479999999999999999999999999999886

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.10  E-value=0.019  Score=51.92  Aligned_cols=34  Identities=26%  Similarity=0.538  Sum_probs=31.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|.|||+|..|+.+|..|++.|++|+++|++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3689999999999999999999999999999864

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.10  E-value=0.021  Score=47.73  Aligned_cols=33  Identities=18%  Similarity=0.111  Sum_probs=30.9

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      +|.|||+|..|...|..|.+.|++|++++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            699999999999999999999999999998763

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=95.09  E-value=0.017  Score=53.20  Aligned_cols=35  Identities=17%  Similarity=0.325  Sum_probs=32.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .++|+|||+|.+|+.+|..|++.+.+|+++++.+.
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            47899999999999999999999999999999875

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=95.08  E-value=0.015  Score=51.05  Aligned_cols=33  Identities=24%  Similarity=0.466  Sum_probs=31.0

Q ss_pred             CeEEEECCCccHHHHHHHHhh-cc-CceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLAN-HA-AKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~-~g-~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++ .| .+|+++++.+
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            589999999999999999999 99 9999999875

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.08  E-value=0.024  Score=46.41  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=32.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .++|.|||+|..|.++|..|.+.|++|++++++..
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            57899999999999999999999999999998753

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.05  E-value=0.026  Score=48.55  Aligned_cols=32  Identities=31%  Similarity=0.396  Sum_probs=30.4

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~   39 (303)
                      .+|+|||+|..|.+.|..|++.|.+|++++++
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            58999999999999999999999999999985

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=95.01  E-value=0.012  Score=50.71  Aligned_cols=33  Identities=24%  Similarity=0.252  Sum_probs=30.4

Q ss_pred             CeEEEECCCccHHHHHHHHhh---ccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLAN---HAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~---~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++   .|.+|+++++++
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~   37 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD   37 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence            379999999999999999999   899999999874

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.01  E-value=0.028  Score=48.78  Aligned_cols=34  Identities=24%  Similarity=0.282  Sum_probs=31.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|.|||+|..|.+.|..|++.|++|+++++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3589999999999999999999999999999864

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=95.01  E-value=0.019  Score=50.19  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=32.1

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccCceEEEeec
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~  218 (303)
                      .+.+|+|||+|.+|+-+|..|.+.|.+|++++++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~   76 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN   76 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            4679999999999999999999999999999998

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=94.99  E-value=0.02  Score=48.70  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=30.5

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|+|||+|..|.+.|..|.+.|.+|++++|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            489999999999999999999999999999865

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=94.98  E-value=0.018  Score=53.11  Aligned_cols=35  Identities=23%  Similarity=0.451  Sum_probs=32.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .++|+|||+|.+|+.+|..|++.+.+|+++++.+.
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            47899999999999999999999999999999875

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=94.97  E-value=0.014  Score=50.71  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=30.5

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++|+|||+|.+|+-+|..|+ .|.+|+++++.+
T Consensus         9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~   41 (381)
T 3nyc_A            9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREA   41 (381)
T ss_dssp             ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSS
T ss_pred             cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCC
Confidence            478999999999999999999 599999999975

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.97  E-value=0.028  Score=50.37  Aligned_cols=34  Identities=32%  Similarity=0.536  Sum_probs=31.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|.|||+|..|...|..|++.|++|+++|+++
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~   87 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNE   87 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcH
Confidence            3689999999999999999999999999999875

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=94.94  E-value=0.017  Score=51.53  Aligned_cols=33  Identities=30%  Similarity=0.512  Sum_probs=31.1

Q ss_pred             CeEEEECCCccHHHHHHHHhhccC-ceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|. +|+++++.+
T Consensus         7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~   40 (438)
T 3dje_A            7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP   40 (438)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            579999999999999999999999 999999876

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.94  E-value=0.023  Score=51.05  Aligned_cols=33  Identities=21%  Similarity=0.501  Sum_probs=31.2

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|.|||+|..|+.+|..|++.|++|+++|+++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            489999999999999999999999999999875

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.94  E-value=0.023  Score=49.54  Aligned_cols=35  Identities=17%  Similarity=0.362  Sum_probs=31.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      ...+|+|+|||.+|+.+|..|...|. +|+++|++-
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            35689999999999999999999999 999999863

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.92  E-value=0.026  Score=50.57  Aligned_cols=35  Identities=29%  Similarity=0.527  Sum_probs=32.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ..++.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            36899999999999999999999999999999874

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.92  E-value=0.025  Score=48.21  Aligned_cols=34  Identities=15%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      ..+|+|||+|..|..+|..|+..|+ +|+++|++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            3589999999999999999999998 999999865

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.90  E-value=0.024  Score=48.01  Aligned_cols=33  Identities=15%  Similarity=0.259  Sum_probs=30.8

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|.|||+|..|...|..|.+.|++|++++++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            489999999999999999999999999999864

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=94.89  E-value=0.017  Score=49.85  Aligned_cols=32  Identities=22%  Similarity=0.325  Sum_probs=30.0

Q ss_pred             eEEEECCCccHHHHHHHHhhcc------CceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHA------AKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g------~~vt~~~r~~  219 (303)
                      +|+|||+|.+|+-+|..|++.|      .+|+++++.+
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            6999999999999999999998      8999999875

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.88  E-value=0.028  Score=50.11  Aligned_cols=35  Identities=17%  Similarity=0.178  Sum_probs=32.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+.+|.|||.|+.||.+|..|++.|++|+.+|-+.
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            35689999999999999999999999999999765

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=94.88  E-value=0.015  Score=52.38  Aligned_cols=34  Identities=38%  Similarity=0.557  Sum_probs=31.3

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~   49 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   49 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            5689999999999999999999999999999876

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.88  E-value=0.023  Score=47.26  Aligned_cols=36  Identities=25%  Similarity=0.412  Sum_probs=32.7

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++++|+|||+|.+|...+..|.+.|++|+++....
T Consensus        11 l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            457999999999999999999999999999997654

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=94.86  E-value=0.019  Score=52.01  Aligned_cols=34  Identities=24%  Similarity=0.448  Sum_probs=31.4

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~   44 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEART   44 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence            5689999999999999999999999999998764

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=94.85  E-value=0.013  Score=43.69  Aligned_cols=34  Identities=21%  Similarity=0.331  Sum_probs=30.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|+|||+|..|..+|..|.+.|.+|++++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            4689999999999999999999999999998864

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=94.84  E-value=0.014  Score=52.48  Aligned_cols=33  Identities=33%  Similarity=0.516  Sum_probs=31.2

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~   39 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKP   39 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            479999999999999999999999999999976

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=94.83  E-value=0.011  Score=53.07  Aligned_cols=33  Identities=30%  Similarity=0.570  Sum_probs=31.0

Q ss_pred             CeEEEECCCccHHHHHHHHhhcc------CceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHA------AKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g------~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|      .+|+++++++
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~   44 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP   44 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCC
Confidence            58999999999999999999999      8999999874

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=94.80  E-value=0.028  Score=47.36  Aligned_cols=33  Identities=21%  Similarity=0.310  Sum_probs=30.9

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|+|||+|..|.+.|..|.+.|.+|++++|+.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            489999999999999999999999999999874

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=94.79  E-value=0.017  Score=52.64  Aligned_cols=33  Identities=27%  Similarity=0.449  Sum_probs=30.8

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..|+|||+|.+|+-+|..|+++|.+|+++++.+
T Consensus         4 ~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~   36 (501)
T 2qcu_A            4 KDLIVIGGGINGAGIAADAAGRGLSVLMLEAQD   36 (501)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence            479999999999999999999999999999864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=94.79  E-value=0.039  Score=44.17  Aligned_cols=34  Identities=21%  Similarity=0.188  Sum_probs=30.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|.|||+|..|...|..|.+.|++|++++++.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999864

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=94.79  E-value=0.017  Score=51.85  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=31.5

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus        12 ~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~   44 (453)
T 2bcg_G           12 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQD   44 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            579999999999999999999999999999987

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.78  E-value=0.03  Score=42.10  Aligned_cols=34  Identities=15%  Similarity=0.330  Sum_probs=31.4

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++++|+|+|.+|..++..|.+.|.+|+++.+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4689999999999999999999999999999874

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=94.78  E-value=0.027  Score=49.73  Aligned_cols=34  Identities=21%  Similarity=0.334  Sum_probs=31.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|+|||+|.+|+.+|..|...|.+|+++|++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            5689999999999999999999999999999865

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=94.74  E-value=0.028  Score=53.38  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=31.5

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~  297 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCADA  297 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4689999999999999999999999999999863

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.73  E-value=0.025  Score=51.05  Aligned_cols=35  Identities=14%  Similarity=0.201  Sum_probs=32.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC-CC-CeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ-SI-PYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~-g~-~v~iie~~~~   41 (303)
                      ..+|.|||+|..|+.+|..|++. |+ +|+++|++..
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            46899999999999999999999 99 9999999865

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=94.71  E-value=0.037  Score=46.74  Aligned_cols=41  Identities=17%  Similarity=0.239  Sum_probs=32.3

Q ss_pred             CCCCCCCCcEEEECC-cHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            1 MKEQAAGVEVIMVGA-GTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         1 M~~~~~~~~vvIIGa-G~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      |.....+++|+|.|| |..|..++..|.+.|++|+++++...
T Consensus         1 M~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            1 MQRNTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCcccCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            544344678999999 99999999999999999999998654

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.69  E-value=0.029  Score=48.79  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=31.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERE   39 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~   39 (303)
                      ...+|+|+|||.+|..+|+.|...|. +|+++|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            45799999999999999999999998 79999987

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=94.69  E-value=0.036  Score=47.39  Aligned_cols=34  Identities=18%  Similarity=0.381  Sum_probs=30.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      ..+|+|||+|..|..+|..|+..|+ +|+++|.+.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            3589999999999999999999998 899999764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.67  E-value=0.03  Score=46.93  Aligned_cols=34  Identities=24%  Similarity=0.208  Sum_probs=31.5

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ++|.|||.|..|...|..|.+.|++|++++++..
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999998753

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=94.65  E-value=0.02  Score=50.63  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=30.7

Q ss_pred             CeEEEECCCccHHHHHHHHhhc--cCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANH--AAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~--g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.  |.+|+++++.+
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~   71 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG   71 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            4799999999999999999999  99999999864

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=94.64  E-value=0.02  Score=51.35  Aligned_cols=33  Identities=30%  Similarity=0.494  Sum_probs=31.2

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~   59 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   59 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            479999999999999999999999999999876

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=94.62  E-value=0.02  Score=53.15  Aligned_cols=33  Identities=27%  Similarity=0.478  Sum_probs=30.9

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..|+|||+|.+|+-+|..|+++|.+|+++++.+
T Consensus        33 ~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~   65 (571)
T 2rgh_A           33 LDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD   65 (571)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            579999999999999999999999999999864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.62  E-value=0.036  Score=40.99  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=31.9

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++++|+|.|..|..+|..|.+.|.+|+++.+++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4789999999999999999999999999999886

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=94.61  E-value=0.028  Score=51.73  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=32.1

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~  140 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK  140 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccC
Confidence            4689999999999999999999999999999986

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=94.59  E-value=0.024  Score=51.67  Aligned_cols=34  Identities=26%  Similarity=0.456  Sum_probs=31.9

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus        12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~   45 (499)
T 2qa2_A           12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLP   45 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            3589999999999999999999999999999976

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=94.58  E-value=0.036  Score=48.67  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=31.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ...+|+|||+|.+|+.++..|...|.+|+++|++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35789999999999999999999999999999865

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.58  E-value=0.026  Score=47.37  Aligned_cols=34  Identities=21%  Similarity=0.211  Sum_probs=31.4

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .+|.|||.|..|...|..|.+.|++|+++++++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999998763

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=94.58  E-value=0.031  Score=46.24  Aligned_cols=34  Identities=18%  Similarity=0.334  Sum_probs=30.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCC-eEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~~   40 (303)
                      ..+|.|||+|..|...|..|.+.|++ |.+++++.
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            46899999999999999999999999 89998864

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=94.58  E-value=0.029  Score=53.10  Aligned_cols=33  Identities=15%  Similarity=0.309  Sum_probs=31.0

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeec
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~  218 (303)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~  304 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRRGWQVTLYCAD  304 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            368999999999999999999999999999985

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=94.57  E-value=0.022  Score=53.23  Aligned_cols=34  Identities=32%  Similarity=0.455  Sum_probs=31.4

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .-.|+|||+|..|+++|..+++.|.+|+++++.+
T Consensus        21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   54 (641)
T 3cp8_A           21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDL   54 (641)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecc
Confidence            3589999999999999999999999999999874

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=94.56  E-value=0.016  Score=46.93  Aligned_cols=35  Identities=26%  Similarity=0.327  Sum_probs=30.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ...+|+|+|+|..|..+|..|.+.|+ |+++|+++.
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            45689999999999999999999999 999998753

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.55  E-value=0.034  Score=47.72  Aligned_cols=34  Identities=21%  Similarity=0.324  Sum_probs=31.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +.+|.|||+|..|.+.|..|.+.|++|++++++.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3689999999999999999999999999998864

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=94.55  E-value=0.027  Score=51.34  Aligned_cols=34  Identities=29%  Similarity=0.415  Sum_probs=31.9

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus        11 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~   44 (500)
T 2qa1_A           11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLV   44 (500)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3589999999999999999999999999999986

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=94.54  E-value=0.023  Score=53.16  Aligned_cols=33  Identities=27%  Similarity=0.486  Sum_probs=30.9

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -.|+|||+|..|+++|..+++.|.+|+++++.+
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   61 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI   61 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence            489999999999999999999999999999874

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=94.53  E-value=0.021  Score=52.20  Aligned_cols=33  Identities=30%  Similarity=0.358  Sum_probs=30.9

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         5 ~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~   37 (520)
T 1s3e_A            5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARD   37 (520)
T ss_dssp             CSEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            579999999999999999999999999998865

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.52  E-value=0.04  Score=47.24  Aligned_cols=34  Identities=18%  Similarity=0.306  Sum_probs=31.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      +.+|+|||+|..|..+|..|+..|+ +|+++|.+.
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            3589999999999999999999998 999999875

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=94.52  E-value=0.026  Score=51.82  Aligned_cols=34  Identities=29%  Similarity=0.445  Sum_probs=31.4

Q ss_pred             CCeEEEECCCccHHHHHHHHhh---ccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLAN---HAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~---~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|.+|+-+|..|++   .|.+|+++++.+
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   41 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA   41 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence            3689999999999999999999   899999999865

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=94.51  E-value=0.022  Score=52.27  Aligned_cols=33  Identities=39%  Similarity=0.613  Sum_probs=31.5

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~   38 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRP   38 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            589999999999999999999999999999987

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=94.51  E-value=0.025  Score=49.60  Aligned_cols=33  Identities=30%  Similarity=0.513  Sum_probs=30.7

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~   36 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   36 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            489999999999999999999999999999865

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.49  E-value=0.036  Score=47.94  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=30.8

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|+|||+|..|...|..|.+.|++|++++++.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            589999999999999999999999999999864

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.48  E-value=0.04  Score=49.65  Aligned_cols=34  Identities=26%  Similarity=0.296  Sum_probs=31.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|.|||+|..|...|..|++.|++|+++|++.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3579999999999999999999999999999865

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=94.47  E-value=0.022  Score=52.04  Aligned_cols=33  Identities=21%  Similarity=0.431  Sum_probs=30.8

Q ss_pred             CeEEEECCCccHHHHHHHHhhcc-CceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g-~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.| .+|+++++++
T Consensus         9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~   42 (516)
T 1rsg_A            9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD   42 (516)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            58999999999999999999999 9999998865

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=94.46  E-value=0.023  Score=51.90  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=31.3

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~   40 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA   40 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence            479999999999999999999999999999986

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=94.45  E-value=0.031  Score=47.72  Aligned_cols=34  Identities=21%  Similarity=0.354  Sum_probs=31.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|.|||.|..|...|..|.+.|++|++++++.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            4589999999999999999999999999999875

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=94.44  E-value=0.045  Score=49.52  Aligned_cols=34  Identities=18%  Similarity=0.259  Sum_probs=31.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|.|||+|..|...|..|++.|++|+++|++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4589999999999999999999999999999875

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=94.39  E-value=0.024  Score=50.66  Aligned_cols=31  Identities=26%  Similarity=0.298  Sum_probs=29.8

Q ss_pred             CeEEEECCCccHHHHHHHHhhcc-CceEEEee
Q 022090          187 KNVLVVGSGNSGMEIALDLANHA-AKTSLVVR  217 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g-~~vt~~~r  217 (303)
                      .+|+|||+|.+|+-+|..|++.| .+|+++++
T Consensus        24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~   55 (448)
T 3axb_A           24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA   55 (448)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence            58999999999999999999999 99999998

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=94.36  E-value=0.029  Score=52.22  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=31.9

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~   56 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSA   56 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCC
Confidence            4699999999999999999999999999999884

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=94.36  E-value=0.025  Score=52.11  Aligned_cols=33  Identities=36%  Similarity=0.620  Sum_probs=31.3

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~   59 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTD   59 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            479999999999999999999999999999986

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=94.35  E-value=0.026  Score=52.67  Aligned_cols=33  Identities=39%  Similarity=0.603  Sum_probs=30.9

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -.|+|||+|..|+++|..+++.|.+|.++++.+
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~   60 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNA   60 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecc
Confidence            579999999999999999999999999999874

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=94.35  E-value=0.024  Score=52.48  Aligned_cols=33  Identities=36%  Similarity=0.648  Sum_probs=31.3

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+.+|..+++.|.+|+++++.+
T Consensus       127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~  159 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEP  159 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            589999999999999999999999999999876

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.34  E-value=0.035  Score=45.57  Aligned_cols=34  Identities=24%  Similarity=0.430  Sum_probs=31.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      ..+|+|||+|-.|..+|..|++.|+ +++++|++.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            3689999999999999999999998 899999875

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.33  E-value=0.021  Score=51.47  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=31.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .++|+|+|+|-.|..+|..|...|++|+++|+++
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3589999999999999999999999999999875

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=94.33  E-value=0.028  Score=51.97  Aligned_cols=33  Identities=36%  Similarity=0.506  Sum_probs=31.0

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -.|+|||+|.+|+-+|..|+++|.+|+++++.+
T Consensus        19 ~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d   51 (561)
T 3da1_A           19 LDLLVIGGGITGAGIALDAQVRGIQTGLVEMND   51 (561)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            479999999999999999999999999999874

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=94.33  E-value=0.033  Score=51.31  Aligned_cols=34  Identities=26%  Similarity=0.370  Sum_probs=31.5

Q ss_pred             CCeEEEECCCccHHHHHHHHhh---ccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLAN---HAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~---~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|..|+-+|..|++   .|.+|+++++.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            4689999999999999999999   899999999865

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.30  E-value=0.045  Score=46.88  Aligned_cols=35  Identities=11%  Similarity=0.043  Sum_probs=31.2

Q ss_pred             CCcEEEECCcHHHHH-HHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLA-TAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~-~A~~l~~~g~~v~iie~~~~   41 (303)
                      .++|.|||.|.+|++ +|..|.++|++|++.|+...
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            468999999999996 78889999999999998753

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=94.30  E-value=0.024  Score=51.69  Aligned_cols=33  Identities=27%  Similarity=0.406  Sum_probs=29.7

Q ss_pred             CeEEEECCCccHHHHHHHHhh---ccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLAN---HAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~---~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++   .|.+|+++++.+
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~   38 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN   38 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence            589999999999999999999   999999999875

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=94.28  E-value=0.027  Score=52.17  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=30.9

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~   82 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLV   82 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            479999999999999999999999999999986

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.27  E-value=0.048  Score=47.43  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=31.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|+|+|+|.+|..++..|+..|.+|++++++.
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4689999999999999999999999999999864

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=94.27  E-value=0.029  Score=50.88  Aligned_cols=34  Identities=29%  Similarity=0.441  Sum_probs=31.7

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~   46 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   46 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC
Confidence            4689999999999999999999999999998876

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=94.26  E-value=0.056  Score=49.07  Aligned_cols=47  Identities=23%  Similarity=0.221  Sum_probs=31.5

Q ss_pred             HHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090           92 SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus        92 ~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~  152 (303)
                      ++.|+.+  ++++.|+++..++  ....+.+.++       .+ +.+|.||+|+|  ..|+
T Consensus       268 ~~~GV~v--~~~~~v~~i~~~~--~v~~v~~~~g-------~~-i~aD~Vv~a~G--~~p~  314 (493)
T 1y56_A          268 ERWGIDY--VHIPNVKRVEGNE--KVERVIDMNN-------HE-YKVDALIFADG--RRPD  314 (493)
T ss_dssp             HHHTCEE--EECSSEEEEECSS--SCCEEEETTC-------CE-EECSEEEECCC--EEEC
T ss_pred             HhCCcEE--EeCCeeEEEecCC--ceEEEEeCCC-------eE-EEeCEEEECCC--cCcC
Confidence            4456555  8888888886543  3344555443       57 89999999999  4444

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=94.26  E-value=0.043  Score=46.50  Aligned_cols=32  Identities=31%  Similarity=0.497  Sum_probs=29.7

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCC--CeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~   40 (303)
                      +|+|||+|..|.++|..|+..|+  +|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            79999999999999999999998  899999864

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.25  E-value=0.054  Score=47.96  Aligned_cols=34  Identities=29%  Similarity=0.490  Sum_probs=31.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|+|||.|..|..+|..|.+.|++|+++|+++
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~   37 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP   37 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4579999999999999999999999999999875

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.18  E-value=0.034  Score=41.06  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=31.6

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++++|+|+|..|..++..|.+.|.+|+++.+++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4689999999999999999999999999998876

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=94.15  E-value=0.031  Score=49.97  Aligned_cols=33  Identities=24%  Similarity=0.446  Sum_probs=30.7

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~   38 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARD   38 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence            579999999999999999999999999998864

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=94.13  E-value=0.033  Score=49.12  Aligned_cols=34  Identities=35%  Similarity=0.550  Sum_probs=31.1

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+++|||+|.+|+-+|..|++.|.+|+++++++
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~   62 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRP   62 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccC
Confidence            3589999999999999999999999999998765

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.10  E-value=0.028  Score=39.78  Aligned_cols=34  Identities=26%  Similarity=0.276  Sum_probs=31.0

Q ss_pred             CCeEEEECCCccHHHHHHHHhhcc-CceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g-~~vt~~~r~~  219 (303)
                      .++++|+|+|.+|..++..|.+.| .+|+++.|++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            468999999999999999999999 8899988875

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=94.10  E-value=0.034  Score=47.85  Aligned_cols=33  Identities=21%  Similarity=0.460  Sum_probs=30.8

Q ss_pred             CeEEEECCCccHHHHHHHHhhc--cCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANH--AAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~--g~~vt~~~r~~  219 (303)
                      ..|+|||+|.+|+-+|..|++.  |.+|+++++.+
T Consensus        80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~  114 (344)
T 3jsk_A           80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGV  114 (344)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            4799999999999999999998  99999999875

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=94.09  E-value=0.034  Score=44.66  Aligned_cols=34  Identities=29%  Similarity=0.386  Sum_probs=30.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEE-EecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVI-LEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~i-ie~~~   40 (303)
                      +.+|.|||+|..|.+.|..|.+.|++|++ ++++.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            35899999999999999999999999998 77754

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=94.08  E-value=0.069  Score=45.32  Aligned_cols=34  Identities=15%  Similarity=0.181  Sum_probs=31.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|.|||+|..|...|..|.+.|++|++++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3689999999999999999999999999999865

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.08  E-value=0.035  Score=49.65  Aligned_cols=32  Identities=22%  Similarity=0.398  Sum_probs=30.2

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +|.|||+|..|+..|..|++.|++|+++|++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=94.08  E-value=0.059  Score=45.87  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=30.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERE   39 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~   39 (303)
                      ..+|+|||+|..|.++|..|+..|+ +++++|.+
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            4689999999999999999999999 99999986

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=94.07  E-value=0.031  Score=51.77  Aligned_cols=33  Identities=36%  Similarity=0.613  Sum_probs=31.1

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -.|+|||+|.+|+-+|..+++.|.+|+++++.+
T Consensus       122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~  154 (566)
T 1qo8_A          122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP  154 (566)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            479999999999999999999999999999876

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.05  E-value=0.038  Score=40.41  Aligned_cols=33  Identities=18%  Similarity=0.343  Sum_probs=30.4

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++|+|+|..|..++..|.+.|.+|+++.|++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            589999999999999999999999999998865

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=94.03  E-value=0.032  Score=47.64  Aligned_cols=34  Identities=29%  Similarity=0.474  Sum_probs=30.1

Q ss_pred             CCeEEEECCCccHHHHHHHHhh--ccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLAN--HAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~--~g~~vt~~~r~~  219 (303)
                      ...|+|||+|+.|+-+|..|++  .|.+|+++++.+
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~  100 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV  100 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            4579999999999999999975  499999999875

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=94.03  E-value=0.036  Score=48.25  Aligned_cols=32  Identities=25%  Similarity=0.340  Sum_probs=29.8

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~   34 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            68999999999999999999999999998864

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.01  E-value=0.043  Score=46.68  Aligned_cols=33  Identities=15%  Similarity=0.214  Sum_probs=30.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERE   39 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~   39 (303)
                      ..+|.|||.|..|...|..|.+.|+ +|++++++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4689999999999999999999999 99999986

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=94.00  E-value=0.032  Score=49.17  Aligned_cols=33  Identities=33%  Similarity=0.518  Sum_probs=30.7

Q ss_pred             CeEEEECCCccHHHHHHHHhhc-cCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANH-AAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~-g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++. |.+|+++++++
T Consensus         8 ~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~   41 (399)
T 1v0j_A            8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLERRP   41 (399)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            5899999999999999999999 99999998775

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=93.98  E-value=0.034  Score=47.56  Aligned_cols=32  Identities=31%  Similarity=0.561  Sum_probs=30.3

Q ss_pred             eEEEECCCccHHHHHHHHhhc--cCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANH--AAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~--g~~vt~~~r~~  219 (303)
                      +|+|||+|.+|+-+|..|++.  |.+|+++++.+
T Consensus        67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~  100 (326)
T 2gjc_A           67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV  100 (326)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEecCc
Confidence            799999999999999999998  99999999865

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=93.96  E-value=0.039  Score=40.52  Aligned_cols=35  Identities=23%  Similarity=0.226  Sum_probs=31.0

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..++++|+|+|.+|..++..|.+.|.+|+++.+++
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35789999999999999999999999999988764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=93.96  E-value=0.067  Score=44.74  Aligned_cols=33  Identities=18%  Similarity=0.202  Sum_probs=30.9

Q ss_pred             CcEEEECC-cHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGa-G~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|.|||+ |..|...|..|.+.|++|++++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            58999999 9999999999999999999999864

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=93.95  E-value=0.053  Score=46.23  Aligned_cols=33  Identities=21%  Similarity=0.405  Sum_probs=0.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~   39 (303)
                      ...+|+|||+|..|.+.|..|++.|.+|+++ ++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=93.94  E-value=0.055  Score=46.96  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=31.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|.|||.|..|...|..|.+.|++|++++++.
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3689999999999999999999999999999875

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=93.94  E-value=0.071  Score=47.33  Aligned_cols=36  Identities=19%  Similarity=0.228  Sum_probs=32.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      +.++|+|+|+|..|..++..+.+.|++|+++|.++.
T Consensus        34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            456899999999999999999999999999987643

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=93.92  E-value=0.065  Score=44.46  Aligned_cols=34  Identities=29%  Similarity=0.375  Sum_probs=31.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .++++|||+|-+|.++|..|.+.|.+|+++.|+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999998875

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.92  E-value=0.08  Score=44.02  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=31.4

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ++|+|.|+|..|..++..|.+.|++|+++.|+..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            5899999999999999999999999999998753

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=93.90  E-value=0.037  Score=50.68  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=31.3

Q ss_pred             CCeEEEECCCccHHHHHHHHhh------------ccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLAN------------HAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~------------~g~~vt~~~r~~  219 (303)
                      ..+|+|||+|.+|+-+|..|++            .|.+|+++++.+
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~   52 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD   52 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence            4689999999999999999999            899999999865

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=93.89  E-value=0.034  Score=50.07  Aligned_cols=33  Identities=21%  Similarity=0.343  Sum_probs=30.8

Q ss_pred             CeEEEECCCccHHHHHHHHhhcc--CceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g--~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|  .+|+++++++
T Consensus         5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~   39 (475)
T 3lov_A            5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGE   39 (475)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            58999999999999999999999  8999999865

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.88  E-value=0.063  Score=46.81  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=31.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|+|+|+|..|..+|..|+..|.+|+++|++.
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4689999999999999999999999999999864

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=93.88  E-value=0.055  Score=45.85  Aligned_cols=32  Identities=25%  Similarity=0.411  Sum_probs=29.9

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|+|||+|..|.+.|..|. .|.+|++++|+.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            48999999999999999999 999999999875

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=93.85  E-value=0.034  Score=47.19  Aligned_cols=31  Identities=23%  Similarity=0.380  Sum_probs=29.3

Q ss_pred             CcEEEECCcHHHHHHHHHHhhC-----C-CCeEEEec
Q 022090            8 VEVIMVGAGTSGLATAACLSLQ-----S-IPYVILER   38 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~-----g-~~v~iie~   38 (303)
                      .+|.|||+|..|...|..|.+.     | ++|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            5899999999999999999999     9 99999987

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.83  E-value=0.042  Score=49.73  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=30.4

Q ss_pred             CcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~   40 (303)
                      .+|.|||.|..|+..|..|++.  |++|+++|++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            5899999999999999999998  78999999864

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=93.83  E-value=0.035  Score=50.30  Aligned_cols=33  Identities=30%  Similarity=0.416  Sum_probs=31.1

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~   72 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARD   72 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            589999999999999999999999999998875

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.83  E-value=0.065  Score=46.86  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=31.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ...+|+|||+|..|..+|..|+..|.+|+++|++.
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            35789999999999999999999999999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.82  E-value=0.048  Score=42.23  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=32.6

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhc-cCceEEEeecC
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANH-AAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~-g~~vt~~~r~~  219 (303)
                      ..+++++|+|.|.+|..+|..|.+. |.+|+++.+++
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            3467899999999999999999999 99999998876

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=93.80  E-value=0.05  Score=46.39  Aligned_cols=33  Identities=12%  Similarity=0.173  Sum_probs=31.2

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCC-CCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQS-IPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~   40 (303)
                      .+|.|||.|..|...|..|++.| ++|++++++.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            57999999999999999999999 9999999875

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=93.80  E-value=0.059  Score=46.07  Aligned_cols=34  Identities=29%  Similarity=0.378  Sum_probs=30.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~   40 (303)
                      ..+|+|||+|..|.++|..|+..|.  +++++|.+.
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            4689999999999999999999987  899998754

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.80  E-value=0.077  Score=44.75  Aligned_cols=33  Identities=33%  Similarity=0.506  Sum_probs=30.9

Q ss_pred             CcEEEEC-CcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVG-AGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIG-aG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|.||| +|..|.+.|..|.+.|++|++++++.
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            4899999 99999999999999999999999865

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=93.79  E-value=0.067  Score=44.45  Aligned_cols=34  Identities=21%  Similarity=0.317  Sum_probs=31.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+.++|+|+|-+|.++|..|.+.|.+|++++|+.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4689999999999999999999999999998764

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=93.79  E-value=0.066  Score=42.48  Aligned_cols=32  Identities=25%  Similarity=0.314  Sum_probs=29.9

Q ss_pred             cEEEEC-CcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMVG-AGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvIIG-aG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +|+||| +|..|...|..|.+.|++|++++++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            699999 99999999999999999999999864

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=93.79  E-value=0.039  Score=50.33  Aligned_cols=33  Identities=24%  Similarity=0.450  Sum_probs=31.1

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -.|+|||+|..|+-+|..+++.|.+|+++++.+
T Consensus        42 ~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~   74 (510)
T 4at0_A           42 ADVVVAGYGIAGVAASIEAARAGADVLVLERTS   74 (510)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            479999999999999999999999999999876

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=93.72  E-value=0.048  Score=43.43  Aligned_cols=38  Identities=16%  Similarity=0.280  Sum_probs=31.1

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       182 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ......+|.|||.|..|.-+|..|++.|.+|+++.|++
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~   52 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKD   52 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            44557899999999999999999999999999998875

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=93.69  E-value=0.089  Score=46.12  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=32.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ..++|+|||+|..|..++..+.+.|++|+++|.++.
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            356899999999999999999999999999997653

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.65  E-value=0.053  Score=47.91  Aligned_cols=31  Identities=26%  Similarity=0.372  Sum_probs=29.1

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +|.|||+|..|+..|..|++ |++|+++|++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            69999999999999999999 99999999864

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=93.65  E-value=0.078  Score=47.90  Aligned_cols=34  Identities=9%  Similarity=0.178  Sum_probs=31.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +.+|.|||.|..|...|..|.+.|++|++++++.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4589999999999999999999999999999876

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=93.63  E-value=0.051  Score=46.45  Aligned_cols=30  Identities=27%  Similarity=0.199  Sum_probs=29.0

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEec
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILER   38 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~   38 (303)
                      +|.|||+|..|...|..|.+.|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            699999999999999999999999999998

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=93.61  E-value=0.069  Score=45.36  Aligned_cols=32  Identities=28%  Similarity=0.436  Sum_probs=29.2

Q ss_pred             cEEEECCcHHHHHHHHHHhhC--CCCeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQ--SIPYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~   40 (303)
                      +|+|||+|..|.++|..|+..  |.+|+++|++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            799999999999999999985  78999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	303
d2gv8a2	107	c.3.1.5 (A:181-287) Flavin-dependent monoxygenase	2e-17
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	3e-17
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	2e-12
d1w4xa2	235	c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T	3e-11
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	4e-05
d1ps9a2	162	c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t	8e-05
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	1e-04
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	1e-04
d1gtea3	153	c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenas	1e-04
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	2e-04
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	8e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	0.001
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	0.001
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	0.002
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	0.004
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.002
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	0.002
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	0.002
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	0.002
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	0.002
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	0.003
d1trba2	126	c.3.1.5 (A:119-244) Thioredoxin reductase {Escheri	0.003
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	0.004

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 74.3 bits (182), Expect = 2e-17
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 154 PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTS 213
           P+I+GL  +  +    G V+HS+ ++  + + G++VLVVG  +S  ++   L   A    
Sbjct: 2   PNIKGLDEY--AKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPI 59

Query: 214 LVVRSPVHVLSREMV 228
                    +  E +
Sbjct: 60  YQSLLGGGDIQNESL 74

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 78.3 bits (192), Expect = 3e-17
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 2   KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQ 61
           ++    V+V++VGAG SGL     L        ++E       +W    Y   R  +   
Sbjct: 2   RQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESI 61

Query: 62  FCQLPHLPFPSSYP----MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM 117
                              + S+ + + +++     F++   I +  +V +A++DEATN 
Sbjct: 62  EYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNT 121

Query: 118 WN 119
           W 
Sbjct: 122 WT 123

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 64.7 bits (156), Expect = 2e-12
 Identities = 36/269 (13%), Positives = 69/269 (25%), Gaps = 55/269 (20%)

Query: 10  VIMVGAGTSGLATAACLSLQSIP--YVILERENCYASIW--------------------- 46
           + ++GAG SGL TA  L  +       + ER      +W                     
Sbjct: 7   IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTT 66

Query: 47  ------------KKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHF 94
                           Y  L+ +   +        F      F  R    E+   Y    
Sbjct: 67  EPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPL 126

Query: 95  NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154
              P I+    V           W V      +     ++ +    + + +G    P+T 
Sbjct: 127 --LPFIKLATDVLDIEKK--DGSWVVTYKGTKAGSPISKDIF--DAVSICNGHYEVPYTG 180

Query: 155 DIRGLCSFCSSATGTGEVI-------HSTQYKNGKPYG-------GKNVLVVGSGNSGME 200
            +  +     +   + E             Y++            G  + VV    S  +
Sbjct: 181 YLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQ 240

Query: 201 IALDLANHAAKTSLVVRSPVHVLSREMVY 229
            A      + +  L  +        E+++
Sbjct: 241 AAFLARVWSGRLKLPSKEEQLKWQDELMF 269

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 60.2 bits (144), Expect = 3e-11
 Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 151 PFTPDIRGLCSFCSSATGTGEVIHSTQY-KNGKPYGGKNVLVVGSGNSGMEIALDLANHA 209
           P  P+  GL  F       G + H+  +      + G+ V V+G+G+SG++++  +A  A
Sbjct: 2   PQLPNFPGLKDF------AGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQA 55

Query: 210 AKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREG 269
           A+  +  R+P   +      L       +   + +      +        +         
Sbjct: 56  AELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVS 115

Query: 270 PFFMKAAYGKY 280
              +     +Y
Sbjct: 116 DEELVETLERY 126

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 18/141 (12%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-------IWKKYSYDRLRLHLAKQF 62
           + +VG   SGL  A  L    +   + ER     S       +  +  +  L   +    
Sbjct: 7   IAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDS 66

Query: 63  CQLPHLPF-------PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT 115
             +P                   +  +F  +   Y   + +    RY  S       + +
Sbjct: 67  ISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDS 126

Query: 116 NMWNVKASNLLSPGREIEEYY 136
               ++ S+    G + E  +
Sbjct: 127 ETVQMRFSD----GTKAEANW 143

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.9 bits (92), Expect = 8e-05
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 8/67 (11%)

Query: 151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA 210
           P TP I G+           +V+        K   G  V ++G G  G + A+ L+    
Sbjct: 2   PRTPPIDGI--------DHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGE 53

Query: 211 KTSLVVR 217
            TS  + 
Sbjct: 54  STSQNIA 60

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.8 bits (91), Expect = 1e-04
 Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 2/120 (1%)

Query: 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDT 245
             NV++VG+G +G+E+A  L     + ++ +     V+   +  L               
Sbjct: 3   NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 62

Query: 246 LMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKS--GQIQNLLLEQ 303
           L    +          G           +        +D             I N  L  
Sbjct: 63  LRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELAS 122

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
            A   GEVI++    + + Y   + + +G G +G   +  L     +  +V R P
Sbjct: 24  EAPDGGEVIYNVDENDPREY---DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP 75

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 153

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 13/104 (12%), Positives = 32/104 (30%), Gaps = 9/104 (8%)

Query: 178 YKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVV-RSPVHVLSREMVYLGVVLFK 236
             +  P     V+V+G+G++  + A       A+   +V R     +      + +   +
Sbjct: 37  CHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEE 96

Query: 237 YVPFGWVDTL--------MVMLSRLVYGDLSKYGIPKPREGPFF 272
              F    +          ++  + V  +  + G     E    
Sbjct: 97  KCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIV 140

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 9  EVIMVGAGTSGLATAACLSLQSIPYVILERE 39
          +V ++GAG SGL     L    I  VILER+
Sbjct: 4  QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.9 bits (87), Expect = 8e-04
 Identities = 16/111 (14%), Positives = 30/111 (27%), Gaps = 4/111 (3%)

Query: 9   EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHL 68
            V+++GAG  GL+TA C+  +    +          ++           +A    Q    
Sbjct: 2   RVVVIGAGVIGLSTALCIHERYHSVLQPLDV----KVYADRFTPFTTTDVAAGLWQPYTS 57

Query: 69  PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN 119
              +      ++  F   L H  S       +                 W 
Sbjct: 58  EPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWK 108

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 24/198 (12%), Positives = 55/198 (27%), Gaps = 14/198 (7%)

Query: 10  VIMVGAGTSGLATAACLSLQSIPYVILERE----NCYASIWKKYSYDRLRLHLAKQFCQL 65
            I +G G+ G+A+    ++      ++E +     C                + +     
Sbjct: 5   YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMY 64

Query: 66  PHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL 125
                  +     +    I     Y+   +      Y+  +   + D          +  
Sbjct: 65  GPDYGFDTTINKFNWETLIASRTAYIDRIHTS----YENVLGKNNVDVIKGFARFVDAKT 120

Query: 126 LSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS-ATGTGEVIHSTQYKNGKPY 184
           L    E     +   L+   G  ++P  P    +    +   T     I   +Y+N    
Sbjct: 121 LEVNGET--ITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNI- 177

Query: 185 GGKNVLVVGSGNSGMEIA 202
             + +  VG     +E+ 
Sbjct: 178 --EGIYAVGDNTGAVELT 193

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 7/57 (12%), Positives = 18/57 (31%)

Query: 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWV 243
             V+V+G+G + +    +L     +  + V         +   L      +     +
Sbjct: 4   APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKI 60

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
           +VL+VGSG +G   A+  A    +T L+    
Sbjct: 3   DVLIVGSGPAGAAAAIYSARKGIRTGLMGERF 34

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 19/198 (9%), Positives = 41/198 (20%), Gaps = 21/198 (10%)

Query: 9   EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHL 68
           +V++VG+G +G A A   + + I   ++        +                   + + 
Sbjct: 3   DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILD---------------TVDIENY 47

Query: 69  PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSP 128
                            H+D Y        S                   +       S 
Sbjct: 48  ISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSI 107

Query: 129 GREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKN 188
                        +  + E        I   C          + + +       PY    
Sbjct: 108 IVATGAKLPNTNWLEGAVERNRMGEIIIDAKCET------NVKGVFAAGDCTTVPYKQII 161

Query: 189 VLVVGSGNSGMEIALDLA 206
           +       + +     L 
Sbjct: 162 IATGEGAKASLSAFDYLI 179

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 5/31 (16%), Positives = 12/31 (38%)

Query: 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVV 216
              + ++G+G + +  A  LA        + 
Sbjct: 4   SAKIALLGAGPASISCASFLARLGYSDITIF 34

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 10 VIMVGAGTSGLATAACLSLQSIPYVILEREN 40
          VI++G+G SGLA A  L    +   +LE  +
Sbjct: 8  VIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 8/35 (22%), Positives = 13/35 (37%)

Query: 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH 221
             + +VGSG +    A+  A    K  L      +
Sbjct: 6   TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAN 40

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 8  VEVIMVGAGTSGLATAACLSLQSIPYV-ILER 38
          +++++ GAG  GL+ A  L    I  V +LE 
Sbjct: 2  IDILIAGAGIGGLSCALALHQAGIGKVTLLES 33

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 15/121 (12%), Positives = 30/121 (24%), Gaps = 3/121 (2%)

Query: 1   MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK 60
           M E+    +VI++G G +    +  +S+     + ++R   Y       +         +
Sbjct: 3   MDEE---YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQ 59

Query: 61  QFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV 120
                P               +F+      V         RY                  
Sbjct: 60  LLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIY 119

Query: 121 K 121
           K
Sbjct: 120 K 120

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 9  EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
          +V++VG G SG+A A  L    +  V+LE  +
Sbjct: 1  DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 126

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 170 GEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229
           G  + +    +G  Y  + V V+G GN+ +E AL L+N A++  L+ R       + ++ 
Sbjct: 11  GRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIK 70

Query: 230 LGVVLFKYVPFGWVDTLMVMLSRLVYGD 257
               L   V  G +          V GD
Sbjct: 71  R---LMDKVENGNIILHTNRTLEEVTGD 95

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 189 VLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220
           VLVVG+G++G   +L      A   LV ++P 
Sbjct: 22  VLVVGAGSAGFNASLAAKKAGANVILVDKAPF 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	303
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.93
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.91
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.78
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.76
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.62
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.6
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.57
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.48
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.47
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.46
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.45
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.44
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.4
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.4
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.39
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.39
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.39
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.37
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.35
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.33
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.33
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.33
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.33
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.33
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.32
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.32
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.31
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.31
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	99.3
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.3
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.3
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.28
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.27
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.27
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.27
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.26
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.26
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.25
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.23
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.23
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.22
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.21
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.2
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.2
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.19
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.16
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.15
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.14
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.13
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.12
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.1
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	99.1
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.09
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.09
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.09
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.04
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.03
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.03
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.03
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.02
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.01
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.97
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.97
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.97
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.96
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.94
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.93
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.93
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.9
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.9
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.9
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.9
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.89
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.84
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.82
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.82
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.81
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.8
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.79
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.78
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.78
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.78
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.78
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.75
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.73
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.72
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.7
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.7
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.69
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.66
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.66
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.65
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.62
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.58
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.56
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.55
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.55
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.54
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.44
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.44
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.43
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.37
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.37
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.34
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.33
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.29
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.22
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.2
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.15
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.14
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.06
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.01
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.0
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.97
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.9
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.89
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.82
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.8
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.74
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.7
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.69
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.67
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.64
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.61
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.61
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.6
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.41
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.36
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	97.34
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.33
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.32
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	97.28
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.2
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.15
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.14
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.12
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.12
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.09
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.07
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.05
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.04
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.01
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.01
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.99
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.97
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.95
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.89
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.87
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.86
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.85
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.84
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.84
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	96.83
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.83
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	96.76
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.75
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.75
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	96.71
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.66
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	96.64
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.64
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.56
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.56
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.5
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.44
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	96.41
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.41
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.38
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.37
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.37
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	96.36
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.36
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	96.36
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.33
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.32
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	96.32
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	96.31
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	96.26
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	96.23
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	96.19
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	96.18
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.12
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.08
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	96.06
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.03
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.03
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.03
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.99
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.94
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	95.93
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.91
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.89
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	95.86
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.82
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.71
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.71
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.69
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	95.67
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.65
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.62
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.6
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.54
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	95.52
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.52
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.5
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	95.48
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	95.45
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.44
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.4
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.39
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.37
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	95.34
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.32
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.26
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.25
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.23
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.18
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.09
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.08
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	95.06
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	95.06
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.04
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	95.03
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.02
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	94.99
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.98
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	94.97
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	94.94
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	94.94
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.9
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	94.82
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.75
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.71
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.69
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	94.67
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.67
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	94.66
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.55
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.51
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.49
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.43
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.4
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	94.4
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	94.31
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.21
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.19
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.18
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.16
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.12
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.09
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.0
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.95
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.91
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	93.9
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.87
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	93.81
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	93.76
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.62
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	93.56
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	93.5
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	93.32
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	93.29
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	93.28
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.1
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	93.02
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	92.93
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	92.89
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	92.78
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.73
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	92.7
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.54
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	92.54
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	92.4
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	92.37
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	92.34
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	92.29
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	92.28
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	92.27
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	92.25
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.24
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.24
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	92.05
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.01
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	91.93
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	91.9
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	91.83
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	91.81
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	91.55
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	91.44
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	91.43
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	91.43
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	91.22
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	91.13
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	91.01
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	91.0
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	90.98
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	90.95
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	90.92
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	90.78
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	90.78
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	90.44
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	90.38
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	90.31
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	90.14
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.05
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	90.04
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	89.85
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	89.75
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	89.6
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	89.52
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	89.4
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.29
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	89.28
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.18
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	89.11
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	89.09
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	88.84
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	88.75
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	88.62
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	88.58
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	88.57
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	88.52
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	88.49
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	88.4
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	88.34
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	88.34
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	88.31
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	88.26
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	88.14
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	88.07
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	88.07
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	87.97
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	87.93
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	87.9
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	87.87
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	87.85
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	87.84
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	87.79
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	87.77
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	87.73
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	87.69
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	87.52
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	87.37
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	87.28
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	87.2
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	87.2
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	87.17
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	87.17
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	87.15
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	87.07
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	87.06
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	87.02
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	87.0
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	86.97
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	86.8
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	86.55
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	86.54
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	86.43
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	86.4
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	86.36
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	86.31
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	86.3
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	86.28
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	86.22
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	86.19
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	86.14
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	86.05
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	85.92
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	85.9
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	85.83
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	85.76
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	85.6
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	85.56
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	85.47
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	85.44
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	85.38
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	85.35
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	85.31
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	85.31
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	85.24
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	85.15
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	85.12
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	85.08
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	85.02
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	84.97
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.87
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	84.87
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	84.78
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	84.76
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	84.69
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	84.67
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	84.67
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	84.55
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	84.5
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	84.45
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	84.36
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	84.36
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	84.31
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	84.28
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	84.27
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	84.26
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	84.11
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	84.01
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	83.88
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	83.65
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	83.58
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	83.55
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	83.54
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	83.47
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	83.4
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.31
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	82.99
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	82.97
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	82.87
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	82.61
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	82.6
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	82.59
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	82.58
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	82.42
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	82.35
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	82.3
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	82.21
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	82.1
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	82.08
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	81.95
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	81.9
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	81.78
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	81.78
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	81.76
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	81.75
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	81.72
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	81.62
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	81.59
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	81.58
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	81.57
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	81.54
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	81.51
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	81.42
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	81.35
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	81.1
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	81.05
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	81.03
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	80.88
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	80.87
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	80.79
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	80.68
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	80.65
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	80.63
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	80.63
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	80.58
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	80.5
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	80.33
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	80.31
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	80.25
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	80.22
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	80.21
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	80.04
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	80.03
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	80.01

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.93  E-value=3.5e-26  Score=194.23  Aligned_cols=150  Identities=21%  Similarity=0.352  Sum_probs=131.7

Q ss_pred             CCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCC----CCCCCCCC
Q 022090            4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFP----SSYPMFVS   79 (303)
Q Consensus         4 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~   79 (303)
                      ++...||+|||||++||++|..|+++|++|+|||+++.+||+|..+.|+++.++.+...+.++..+.+    .+...+++
T Consensus         4 p~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~   83 (298)
T d1w4xa1           4 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYAS   83 (298)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCB
T ss_pred             CCCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCc
Confidence            44568999999999999999999999999999999999999999989999998887777766655422    34456788


Q ss_pred             HHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCc
Q 022090           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGL  159 (303)
Q Consensus        80 ~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~  159 (303)
                      ++++.+|++.+++++++..+|+++++|+++.+++..+.|.|.+.++       .+ +++|+||+|||..+.|.+|.++++
T Consensus        84 ~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~-------~~-~~~~~~i~atG~ls~~~~p~~~~~  155 (298)
T d1w4xa1          84 QPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHG-------DR-IRARYLIMASGQLSDALTGALFKI  155 (298)
T ss_dssp             HHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTC-------CE-EEEEEEEECCCSCCCCTTHHHHTS
T ss_pred             cchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccc-------cc-cccceEEEeecccccccCCccccc
Confidence            9999999999999999988889999999999988888999999875       56 899999999999999999988887


Q ss_pred             cc
Q 022090          160 CS  161 (303)
Q Consensus       160 ~~  161 (303)
                      +.
T Consensus       156 ~i  157 (298)
T d1w4xa1         156 DI  157 (298)
T ss_dssp             EE
T ss_pred             cc
Confidence            63

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.91  E-value=2.4e-24  Score=186.49  Aligned_cols=204  Identities=19%  Similarity=0.209  Sum_probs=141.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCCCccCcCCCC-------------------------------
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYD-------------------------------   52 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~~~~~-------------------------------   52 (303)
                      ..++|+|||||++||++|..|++.|  .+|+||||++.+||+|....++                               
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   82 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   82 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccccccccccccccccccccccccc
Confidence            3579999999999999999998876  5999999999999999864333                               


Q ss_pred             --ceEEecCcccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCc
Q 022090           53 --RLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR  130 (303)
Q Consensus        53 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~  130 (303)
                        .+..+.+..++.+++.+++...+.|+++.++.+|+..+++.++  .+|+++++|++++.++  +.|.|++.+...+. 
T Consensus        83 y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~--~~I~~~t~V~~v~~~~--~~w~Vt~~~~~~~~-  157 (335)
T d2gv8a1          83 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLL--PFIKLATDVLDIEKKD--GSWVVTYKGTKAGS-  157 (335)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGG--GGEECSEEEEEEEEET--TEEEEEEEESSTTC-
T ss_pred             chhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhh--hcccCceEEEEEEecC--CEEEEEEEecCCCC-
Confidence              2333344445556677777788889999999999999998765  4569999999999876  78999998765431 


Q ss_pred             eeEEEEeeCEEEEccCCCCCCCCCCC-----CCccccccCCCCCccEE-----------ecccCCCC-CCCCCCeEEEEC
Q 022090          131 EIEEYYSGRFLVVASGETTNPFTPDI-----RGLCSFCSSATGTGEVI-----------HSTQYKNG-KPYGGKNVLVVG  193 (303)
Q Consensus       131 ~~~~~~~ad~vIlAtG~~~~p~~p~~-----~g~~~~~~~~~~~g~~~-----------~~~~~~~~-~~~~~~~v~ViG  193 (303)
                      +... ..||.||+|||.++.|.+|.+     |+.+.|.+.   ...++           |......+ ..+.+.++.|++
T Consensus       158 ~~~~-~~~d~VI~AtG~~s~p~~~~~~~~~~p~~~~f~~~---~~~~~~~~~~~~~ly~~~~~~~~p~l~f~G~~~~v~~  233 (335)
T d2gv8a1         158 PISK-DIFDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSP---ETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVP  233 (335)
T ss_dssp             CEEE-EEESEEEECCCSSSSBCCCBCCCCCCHHHHSCCST---TTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSCH
T ss_pred             eEEE-EEeeEEEEcccccccceecccccCCCCcchhcccC---ccceeccccceeeeecccccCCCCceEEeeeEEEEec
Confidence            2245 679999999999999988864     444444100   00111           11111111 112345555556


Q ss_pred             CCccHHHHHHHHhhccCceEEEeec
Q 022090          194 SGNSGMEIALDLANHAAKTSLVVRS  218 (303)
Q Consensus       194 ~G~~g~e~a~~l~~~g~~vt~~~r~  218 (303)
                      .+.++++++..++-...++.+-.+.
T Consensus       234 ~~~~e~Qa~~~a~~~~g~~~Lps~~  258 (335)
T d2gv8a1         234 FPTSQAQAAFLARVWSGRLKLPSKE  258 (335)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCCCCHH
T ss_pred             CCchHHHHHHHHHHHcCCccCCCcc
Confidence            6667777666666555555544333

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.78  E-value=3.5e-22  Score=163.89  Aligned_cols=167  Identities=11%  Similarity=0.082  Sum_probs=103.5

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      ...++|+|||||++|+++|..|+++|++|+|+|+++.+||.|.....                      .+.+.......
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~----------------------~~~~~~~~~~~  104 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAA----------------------LPGLGEWSYHR  104 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTT----------------------STTCGGGGHHH
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccc----------------------cceeecccccc
Confidence            34689999999999999999999999999999999999999864211                      01111122344


Q ss_pred             HHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (303)
Q Consensus        85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~  164 (303)
                      ++......+.....  . ...   +....    ..+...+.       .+ +.+|+||+|||  +.+..|.+++.+..  
T Consensus       105 ~~~~~~~~~~~~~~--~-~~~---~~~~~----~~~~~~~~-------~~-~~~d~vviAtG--~~~~~~~~~~~~~~--  162 (233)
T d1djqa3         105 DYRETQITKLLKKN--K-ESQ---LALGQ----KPMTADDV-------LQ-YGADKVIIATG--ASECTLWNELKARE--  162 (233)
T ss_dssp             HHHHHHHHHHHTTC--T-TCE---EECSC----CCCCHHHH-------HT-SCCSEEEECCC--EECCHHHHHHHHTT--
T ss_pred             hhHHHHHHHHhhcc--e-eee---eeccc----ccccchhh-------hh-hccceeeeccC--CCcccccccccccc--
Confidence            44444444332111  0 000   11010    11111111       34 68999999999  44444433322111  


Q ss_pred             CCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       165 ~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                          .....+...........+++++|+|+|++|+|+|..|++.|.+||+++|++
T Consensus       163 ----~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~  213 (233)
T d1djqa3         163 ----SEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRE  213 (233)
T ss_dssp             ----HHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCC
T ss_pred             ----cccchhhhhhhhhccccCCceeEecCchHHHHHHHHHHhcCCceEEEEecc
Confidence                111111111111122356899999999999999999999999999999998

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=2.4e-20  Score=145.13  Aligned_cols=134  Identities=15%  Similarity=0.155  Sum_probs=100.6

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      ..+++|+|||||||||++|..|+++|++|+|||+.+.+||.+....                      ..+.+....++.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~----------------------~~p~~~~~~~~~   98 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAK----------------------QIPGKEEFYETL   98 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHT----------------------TSTTCTTHHHHH
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEE----------------------eCcccchHHHHH
Confidence            3468999999999999999999999999999999999999865310                      113344556888


Q ss_pred             HHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS  164 (303)
Q Consensus        85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~  164 (303)
                      +|+.+.++.+++++  +++++|+.               +        .. ..+|.||+|||  +.|+.+.+|+.+    
T Consensus        99 ~~~~~~~~~~gV~i--~l~~~Vt~---------------~--------~~-~~~d~vilAtG--~~~~~~~~pg~~----  146 (179)
T d1ps9a3          99 RYYRRMIEVTGVTL--KLNHTVTA---------------D--------QL-QAFDETILASG--IPNRALAQPLID----  146 (179)
T ss_dssp             HHHHHHHHHHTCEE--EESCCCCS---------------S--------SS-CCSSEEEECCC--EECCTTHHHHHT----
T ss_pred             HHHHHhhhcCCeEE--EeCCEEcc---------------c--------cc-ccceeEEEeec--CCCcccccchhc----
Confidence            99999999888765  88876621               1        22 57899999999  555555544322    


Q ss_pred             CCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHH-HHHHhhccCce
Q 022090          165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEI-ALDLANHAAKT  212 (303)
Q Consensus       165 ~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~-a~~l~~~g~~v  212 (303)
                                          .+++++|||+|.+++|+ +......|.+|
T Consensus       147 --------------------~g~~v~vigggd~a~~~~~~~Av~~G~~v  175 (179)
T d1ps9a3         147 --------------------SGKTVHLIGGCDVAMELDARRAIAQGTRL  175 (179)
T ss_dssp             --------------------TTCCEEECGGGTCCSSCCHHHHHHHHHHH
T ss_pred             --------------------cCCEEEEECCcHhhhhccchhhhhccCEE
Confidence                                36899999999999987 44454555554

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=3.8e-19  Score=143.90  Aligned_cols=183  Identities=14%  Similarity=0.172  Sum_probs=100.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecCccccc-----CCCCCCCCCCCCCCCH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ-----LPHLPFPSSYPMFVSR   80 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~   80 (303)
                      +|||+|||||++|+++|..|++.|.+|+|+|++. +||+|.+ .+.+...+.....++.     .....+.. .....+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~-~~~~~~~   79 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDT-TINKFNW   79 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEE-EEEEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccC-CcccccH
Confidence            5899999999999999999999999999999964 7887632 2222221111111000     00000000 0011223


Q ss_pred             HHHHHHHHHHH-----------HHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           81 AQFIEHLDHYV-----------SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        81 ~~l~~~l~~~~-----------~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      .++.++....+           +..+++.  ........   ..    ..+...+        .. +.++.+++|||  +
T Consensus        80 ~~~~~~~~~~v~~~~~~~~~~l~~~gV~v--~~~~~~~~---~~----~~~~~~~--------~~-~~~~~~iiatG--~  139 (217)
T d1gesa1          80 ETLIASRTAYIDRIHTSYENVLGKNNVDV--IKGFARFV---DA----KTLEVNG--------ET-ITADHILIATG--G  139 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEE--EESCCEEE---ET----TEEEETT--------EE-EEEEEEEECCC--E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCeEEE--Eeeecccc---ee----eeecCCC--------ce-eeeeeeeeecC--c
Confidence            44444443322           2223322  22211100   00    1111111        56 89999999999  8


Q ss_pred             CCCCCCCCCccccccCCCCCccEEecccC---CCCCCCCCCeEEEECCCccHHHHHHHHhhccCceE
Q 022090          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQY---KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTS  213 (303)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt  213 (303)
                      .|.+|++|+.+...  .+..+.......+   .......+++|+|||+|.+|+|+|..+.+.|.+|+
T Consensus       140 ~p~ip~ip~~~~l~--l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~  204 (217)
T d1gesa1         140 RPSHPREPANDNIN--LEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLS  204 (217)
T ss_dssp             EECCCEEESCTTSC--HHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHHH
T ss_pred             cccCCCCCCcCCcc--cccccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHHHHHHHHHHHHH
Confidence            88888887654310  0000111111111   11122335789999999999999999999998884

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.60  E-value=8.9e-16  Score=126.38  Aligned_cols=134  Identities=17%  Similarity=0.230  Sum_probs=88.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC--CCCceEEecC-ccc---------------------
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--SYDRLRLHLA-KQF---------------------   62 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~--~~~~~~~~~~-~~~---------------------   62 (303)
                      +|||+|||||++|+++|..|+++|++|+|+|+++.+|+.+...  .......... ..+                     
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE   81 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhH
Confidence            4899999999999999999999999999999998887532110  0000000000 000                     


Q ss_pred             -----ccCCCCCCCC-----CCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeE-EEEEeecCCCCce
Q 022090           63 -----CQLPHLPFPS-----SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGRE  131 (303)
Q Consensus        63 -----~~~~~~~~~~-----~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~  131 (303)
                           ......++..     .++......++.+.|.+.+++.+++.  +++++|+++..++  +.+ .|.+.++      
T Consensus        82 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i--~~~~~v~~i~~~~--~~~~~v~~~~g------  151 (251)
T d2i0za1          82 DIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKI--RTNTPVETIEYEN--GQTKAVILQTG------  151 (251)
T ss_dssp             HHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEE--ECSCCEEEEEEET--TEEEEEEETTC------
T ss_pred             HHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcc--cCCcEEEEEEEEC--CEEEEEEeCCC------
Confidence                 0000000000     01122345778888989898888766  9999999998876  433 4666554      


Q ss_pred             eEEEEeeCEEEEccCCCCCCC
Q 022090          132 IEEYYSGRFLVVASGETTNPF  152 (303)
Q Consensus       132 ~~~~~~ad~vIlAtG~~~~p~  152 (303)
                       +. +++|+||+|||..|.|.
T Consensus       152 -~~-i~a~~vI~AtGg~S~p~  170 (251)
T d2i0za1         152 -EV-LETNHVVIAVGGKSVPQ  170 (251)
T ss_dssp             -CE-EECSCEEECCCCSSSGG
T ss_pred             -Ce-EecCeEEEccCCccccc
Confidence             57 89999999999877654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.57  E-value=3.2e-15  Score=123.38  Aligned_cols=135  Identities=16%  Similarity=0.178  Sum_probs=85.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc--------cCc--C-CCCceEEe-cCcccc----cC-----
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI--------WKK--Y-SYDRLRLH-LAKQFC----QL-----   65 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~--------w~~--~-~~~~~~~~-~~~~~~----~~-----   65 (303)
                      .+||+|||||++|++||..|+++|.+|+|+|+++.+|+.        ++.  . ..+..... .+..+.    .+     
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDF   83 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccch
Confidence            589999999999999999999999999999999987632        110  0 00000000 000000    00     


Q ss_pred             ------CCCCC--CCCCCCC--CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCe--EEEEEeecCCCCceeE
Q 022090           66 ------PHLPF--PSSYPMF--VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM--WNVKASNLLSPGREIE  133 (303)
Q Consensus        66 ------~~~~~--~~~~~~~--~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~--~~v~~~~~~~~~~~~~  133 (303)
                            ....+  ......+  ....++.+.+.+.+++.++++  +++++|+++...++...  +.+....        .
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i--~~~~~V~~i~~~~~~~~v~~~~~~~~--------~  153 (253)
T d2gqfa1          84 ISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKI--LLRSEVSQVERIQNDEKVRFVLQVNS--------T  153 (253)
T ss_dssp             HHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEE--ECSCCEEEEEECCSCSSCCEEEEETT--------E
T ss_pred             hhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCe--ecCceEEEEEeecCCceeEEEEecCC--------E
Confidence                  00000  0000011  135678889999999988766  99999999988764332  3333322        6


Q ss_pred             EEEeeCEEEEccCCCCCCC
Q 022090          134 EYYSGRFLVVASGETTNPF  152 (303)
Q Consensus       134 ~~~~ad~vIlAtG~~~~p~  152 (303)
                      + ++||+||+|||..+.|.
T Consensus       154 ~-~~a~~VIiAtGG~S~p~  171 (253)
T d2gqfa1         154 Q-WQCKNLIVATGGLSMPG  171 (253)
T ss_dssp             E-EEESEEEECCCCSSCGG
T ss_pred             E-EEeCEEEEcCCcccccc
Confidence            7 89999999999766554

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=2.3e-13  Score=98.05  Aligned_cols=97  Identities=12%  Similarity=0.056  Sum_probs=79.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .+++|+|||||+.|+.+|..|++.|.+|+++|+.+.+..                      .+           ..++.+
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~----------------------~~-----------d~~~~~   66 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP----------------------SF-----------DPMISE   66 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST----------------------TS-----------CHHHHH
T ss_pred             CCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhh----------------------hc-----------chhhHH
Confidence            357899999999999999999999999999999876421                      00           137888


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG  146 (303)
                      ++.+..++.+++.  ++++.|+.+..++ ++..++.+.++       ++ +.+|.||+|+|
T Consensus        67 ~~~~~l~~~GV~~--~~~~~v~~i~~~~-~~~~~v~~~~g-------~~-~~~D~vi~a~G  116 (116)
T d1gesa2          67 TLVEVMNAEGPQL--HTNAIPKAVVKNT-DGSLTLELEDG-------RS-ETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHHHHHSCEE--ECSCCEEEEEECT-TSCEEEEETTS-------CE-EEESEEEECSC
T ss_pred             HHHHHHHHCCCEE--EeCCEEEEEEEcC-CcEEEEEECCC-------CE-EEcCEEEEecC
Confidence            9999999889776  9999999998765 34567887765       57 89999999998

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.47  E-value=8.1e-14  Score=116.39  Aligned_cols=131  Identities=18%  Similarity=0.241  Sum_probs=86.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC--ccCc------CCCCc------------------------
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--IWKK------YSYDR------------------------   53 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg--~w~~------~~~~~------------------------   53 (303)
                      .+|||+|||||++|+++|+.|+++|.+|+|+|+.+..++  .+..      ..|..                        
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~e~~~   81 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHH   81 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcccccCCCcceeecccCCcchhhhhcccccceeecchhhhhh
Confidence            479999999999999999999999999999999764432  1110      00000                        


Q ss_pred             --------eEEecCccc--------------------------ccCCCCCCCCCC-------CCCCCHHHHHHHHHHHHH
Q 022090           54 --------LRLHLAKQF--------------------------CQLPHLPFPSSY-------PMFVSRAQFIEHLDHYVS   92 (303)
Q Consensus        54 --------~~~~~~~~~--------------------------~~~~~~~~~~~~-------~~~~~~~~l~~~l~~~~~   92 (303)
                              +........                          ..++.+..+...       ..+.+...+...+.+.++
T Consensus        82 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~a~  161 (281)
T d2gf3a1          82 KIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAE  161 (281)
T ss_dssp             CCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHH
T ss_pred             ccccccceeeeeecchhhhhhhhhhhhccccchhhhhhhHhhhhhhhcccccccceeeeccccccccccccccccccccc
Confidence                    000000000                          001111111100       012345678888999999


Q ss_pred             HcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           93 HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        93 ~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      +.|++.  +++++|++++..+  +.|.|.+.+        .+ +.+|.||+|+|.++
T Consensus       162 ~~Gv~i--~~~~~V~~i~~~~--~~v~V~t~~--------g~-i~a~~VViAaG~~s  205 (281)
T d2gf3a1         162 ARGAKV--LTHTRVEDFDISP--DSVKIETAN--------GS-YTADKLIVSMGAWN  205 (281)
T ss_dssp             HTTCEE--ECSCCEEEEEECS--SCEEEEETT--------EE-EEEEEEEECCGGGH
T ss_pred             cccccc--cCCcEEEEEEEEC--CEEEEEECC--------cE-EEcCEEEECCCCcc
Confidence            988765  8999999999876  668888866        46 89999999999754

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.46  E-value=5.6e-14  Score=116.97  Aligned_cols=60  Identities=15%  Similarity=0.040  Sum_probs=49.0

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        77 ~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      +.+...+...+.+.+++.|..+  +.+++|++++.++  +.|.|.+.+        .+ +.||.||+|+|.++
T Consensus       147 ~i~~~~~~~~l~~~~~~~Gv~i--~~~~~V~~i~~~~--~~~~V~t~~--------g~-i~a~~vV~AaG~~s  206 (276)
T d1ryia1         147 HVEPYFVCKAYVKAAKMLGAEI--FEHTPVLHVERDG--EALFIKTPS--------GD-VWANHVVVASGVWS  206 (276)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEE--ETTCCCCEEECSS--SSEEEEETT--------EE-EEEEEEEECCGGGT
T ss_pred             eeecccchhHHHHHHHHcCCEE--ecceEEEeEEeec--ceEEEecCC--------eE-EEcCEEEECCCccH
Confidence            4567788888888999888765  8899999998764  678888865        46 89999999999754

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.45  E-value=8.6e-13  Score=95.35  Aligned_cols=99  Identities=16%  Similarity=0.169  Sum_probs=80.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .+.+++|||||+.|+.+|..|++.|.+|+++++.+.+-                      +.+           ..++.+
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll----------------------~~~-----------d~ei~~   67 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL----------------------PAV-----------DEQVAK   67 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS----------------------TTS-----------CHHHHH
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC----------------------Ccc-----------cchhHH
Confidence            45799999999999999999999999999999987531                      110           137889


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG  146 (303)
                      ++++..++.|+..  +++++|++++..+  +..++++.++++    ..+ +.||.|++|+|
T Consensus        68 ~l~~~l~~~Gv~i--~~~~~v~~i~~~~--~~v~v~~~~~~~----~~~-~~~D~vlvAvG  119 (119)
T d3lada2          68 EAQKILTKQGLKI--LLGARVTGTEVKN--KQVTVKFVDAEG----EKS-QAFDKLIVAVG  119 (119)
T ss_dssp             HHHHHHHHTTEEE--EETCEEEEEEECS--SCEEEEEESSSE----EEE-EEESEEEECSC
T ss_pred             HHHHHHHhcCcee--ecCcEEEEEEEeC--CEEEEEEEECCC----CEE-EECCEEEEeeC
Confidence            9999998888766  9999999998876  556777766432    267 89999999998

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=2.5e-12  Score=93.23  Aligned_cols=101  Identities=14%  Similarity=0.213  Sum_probs=81.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .+++++|||||+.|+.+|..|++.|.+|+|+|+++.+-                      +         .+  ..++.+
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l----------------------~---------~~--d~ei~~   68 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG----------------------A---------SM--DGEVAK   68 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS----------------------S---------SS--CHHHHH
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc----------------------h---------hh--hhhhHH
Confidence            45799999999999999999999999999999987642                      1         00  137889


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEc
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA  144 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlA  144 (303)
                      ++++..++.|++.  +++++|++++..++.....++..++.++  +..+ +++|.|++|
T Consensus        69 ~l~~~l~~~GV~i--~~~~~v~~v~~~~~~~~v~~~~~~~~~~--~~~~-ie~D~vlvA  122 (122)
T d1v59a2          69 ATQKFLKKQGLDF--KLSTKVISAKRNDDKNVVEIVVEDTKTN--KQEN-LEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHHTTCEE--ECSEEEEEEEEETTTTEEEEEEEETTTT--EEEE-EEESEEEEC
T ss_pred             HHHHHHHhccceE--EeCCEEEEEEEeCCCcEEEEEEEeCCCC--CeEE-EEeCEEEEC
Confidence            9999999888766  9999999999887555566666665443  4467 899999987

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.40  E-value=3.1e-15  Score=122.06  Aligned_cols=153  Identities=12%  Similarity=-0.005  Sum_probs=89.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC-------CCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS-------IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVS   79 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g-------~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (303)
                      +++|+|||||||||+||..|+++|       ++|+|||+.+.+||.|+...++                       .+..
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p-----------------------~~~~   58 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAP-----------------------DHPK   58 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCT-----------------------TCTG
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCc-----------------------cccc
Confidence            469999999999999999999987       5799999999999999754221                       1222


Q ss_pred             HHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCc
Q 022090           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGL  159 (303)
Q Consensus        80 ~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~  159 (303)
                      ...+.++........++..  +++.++..          .+...+        .. ..+|.+++|||.  .+..+.++|.
T Consensus        59 ~~~~~~~~~~~~~~~g~~~--~~~~~v~~----------~~~~~~--------~~-~~~~~v~~atGa--~~~~~~~~g~  115 (239)
T d1lqta2          59 IKSISKQFEKTAEDPRFRF--FGNVVVGE----------HVQPGE--------LS-ERYDAVIYAVGA--QSRGVPTPGL  115 (239)
T ss_dssp             GGGGHHHHHHHHTSTTEEE--EESCCBTT----------TBCHHH--------HH-HHSSEEEECCCC--CEECCCCTTS
T ss_pred             chhhhhhhhhhhccCCceE--EEEEEecc----------ccchhh--------hh-ccccceeeecCC--Cccccccccc
Confidence            2344455555555555433  66654310          000111        22 368999999995  3333334433


Q ss_pred             cccccCCCCCccEEecccCCCC------CCCCCCeEEEECCCccHHHHHHHHhh
Q 022090          160 CSFCSSATGTGEVIHSTQYKNG------KPYGGKNVLVVGSGNSGMEIALDLAN  207 (303)
Q Consensus       160 ~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~v~ViG~G~~g~e~a~~l~~  207 (303)
                      +...  .......+........      ....+++++|+|+|++++|++..+..
T Consensus       116 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vv~g~g~~a~d~a~~~v~  167 (239)
T d1lqta2         116 PFDD--QSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK  167 (239)
T ss_dssp             CCBT--TTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred             cccc--cccchhhhhhhhccccccccceeecCCCEEEEeCCCchHHHHHHHHHh
Confidence            2110  0000011111100010      01135788888999999999987654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.39  E-value=3.7e-12  Score=91.74  Aligned_cols=97  Identities=13%  Similarity=0.124  Sum_probs=77.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .+++++|||||+.|+.+|..|.+.|.+|+++|+.+.+...                      +           ..++.+
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~----------------------~-----------d~~~~~   67 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG----------------------F-----------EKQMAA   67 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT----------------------S-----------CHHHHH
T ss_pred             cCCeEEEECCCccceeeeeeecccccEEEEEEecceeccc----------------------c-----------cchhHH
Confidence            4579999999999999999999999999999998864211                      0           136888


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEc
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA  144 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlA  144 (303)
                      ++.+..++.|++.  +++++|++++..+  +...+....++    +..+ +++|.|++.
T Consensus        68 ~l~~~l~~~GI~i--~~~~~v~~i~~~~--~~~~v~~~~~g----~~~~-i~~D~Vlvs  117 (117)
T d1ebda2          68 IIKKRLKKKGVEV--VTNALAKGAEERE--DGVTVTYEANG----ETKT-IDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHTTCEE--EESEEEEEEEEET--TEEEEEEEETT----EEEE-EEESEEEEC
T ss_pred             HHHHHHHhcCCEE--EcCCEEEEEEEcC--CEEEEEEEeCC----CEEE-EEeEEEEEC
Confidence            9999988888766  9999999998876  45667665432    3367 899999973

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.39  E-value=2e-12  Score=95.28  Aligned_cols=99  Identities=14%  Similarity=0.175  Sum_probs=78.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...                                ....++.+
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~--------------------------------~~~~~~~~   81 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER--------------------------------VTAPPVSA   81 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT--------------------------------TSCHHHHH
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccc--------------------------------ccchhhhh
Confidence            3579999999999999999999999999999998863110                                01136778


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeE-EEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGREIEEYYSGRFLVVASG  146 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~~~ad~vIlAtG  146 (303)
                      ++++..++.|++.  +++++|+.++...+.... .+.+.++       .+ +++|.||+|+|
T Consensus        82 ~~~~~~~~~GV~i--~~~~~v~~i~~~~~~~~v~~v~~~~G-------~~-i~~D~vi~a~G  133 (133)
T d1q1ra2          82 FYEHLHREAGVDI--RTGTQVCGFEMSTDQQKVTAVLCEDG-------TR-LPADLVIAGIG  133 (133)
T ss_dssp             HHHHHHHHHTCEE--ECSCCEEEEEECTTTCCEEEEEETTS-------CE-EECSEEEECCC
T ss_pred             hhhhcccccccEE--EeCCeEEEEEEeCCCceEEEEECCCC-------CE-EECCEEEEeeC
Confidence            8888888889776  999999999886644333 3556554       57 89999999998

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.39  E-value=4.7e-12  Score=106.90  Aligned_cols=138  Identities=14%  Similarity=0.160  Sum_probs=84.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC------CCCc----------eE------------Ee
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY------SYDR----------LR------------LH   57 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~------~~~~----------~~------------~~   57 (303)
                      ..+||+|||+|++|+++|..|+++|.+|+|+||.+..||.-...      .+..          ..            ..
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~   94 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIN   94 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhcc
Confidence            46899999999999999999999999999999998777632110      0000          00            00


Q ss_pred             cC--------------cccc----cCCC------CCCCCC-CC--CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEE
Q 022090           58 LA--------------KQFC----QLPH------LPFPSS-YP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS  110 (303)
Q Consensus        58 ~~--------------~~~~----~~~~------~~~~~~-~~--~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~  110 (303)
                      .+              ..+.    .+..      ...+.. .+  .......+...+.+.+.+.++..  ++++.++++.
T Consensus        95 d~~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i--~~~~~v~~li  172 (308)
T d1y0pa2          95 DPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDL--RMNTRGIEVL  172 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEE--ESSEEEEEEE
T ss_pred             chHHHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceE--EEeeccchhh
Confidence            00              0000    0000      000000 00  01123456777777777778665  9999999988


Q ss_pred             EeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090          111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      .+++....-|...+..+   .... +.++.||+|||.++
T Consensus       173 ~~~~G~V~Gv~~~~~~~---~~~~-i~Ak~VVlAtGG~~  207 (308)
T d1y0pa2         173 KDDKGTVKGILVKGMYK---GYYW-VKADAVILATGGFA  207 (308)
T ss_dssp             ECTTSCEEEEEEEETTT---EEEE-EECSEEEECCCCCT
T ss_pred             hhccccccccccccccc---ceeE-eecCeEEEccCccc
Confidence            76633334455554332   3357 89999999999655

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.37  E-value=6e-15  Score=122.11  Aligned_cols=44  Identities=16%  Similarity=0.314  Sum_probs=37.5

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYD   52 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~   52 (303)
                      |||+|||||++|+.+|..+++.|.+|+|+|++. +||+| +..|.|
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciP   46 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVP   46 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcc
Confidence            799999999999999999999999999999976 66654 444444

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.35  E-value=2.3e-12  Score=92.50  Aligned_cols=97  Identities=15%  Similarity=0.191  Sum_probs=73.8

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      ..+.+++|||||+.|+.+|..|++.|.+|+++|+.+.+.                      +         .+  ..++.
T Consensus        19 ~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il----------------------~---------~~--d~~~~   65 (115)
T d1lvla2          19 ALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL----------------------P---------TY--DSELT   65 (115)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS----------------------T---------TS--CHHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc----------------------c---------cc--cchhH
Confidence            345799999999999999999999999999999987642                      1         11  13678


Q ss_pred             HHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090           85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (303)
Q Consensus        85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG  146 (303)
                      +++.+..++.+++.  +++++|++++.    +...+...++     +..+ ++||.||+|+|
T Consensus        66 ~~l~~~l~~~gV~i--~~~~~V~~i~~----~~~~~~~~~~-----~~~~-i~~D~vi~A~G  115 (115)
T d1lvla2          66 APVAESLKKLGIAL--HLGHSVEGYEN----GCLLANDGKG-----GQLR-LEADRVLVAVG  115 (115)
T ss_dssp             HHHHHHHHHHTCEE--ETTCEEEEEET----TEEEEECSSS-----CCCE-ECCSCEEECCC
T ss_pred             HHHHHHHHhhcceE--EcCcEEEEEcC----CeEEEEEcCC-----CeEE-EEcCEEEEecC
Confidence            88888888888766  99999998852    2222222222     2257 89999999998

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.2e-11  Score=87.72  Aligned_cols=103  Identities=13%  Similarity=0.022  Sum_probs=78.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .+++++|||||+.|+.+|..|++.|.+|+++++.+.+-                      +.+           ..++.+
T Consensus        21 ~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l----------------------~~~-----------d~~~~~   67 (125)
T d3grsa2          21 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL----------------------RSF-----------DSMIST   67 (125)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC----------------------TTS-----------CHHHHH
T ss_pred             cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc----------------------cch-----------hhHHHH
Confidence            35799999999999999999999999999999987531                      110           136888


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCC--ceeEEEEeeCEEEEccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPG--REIEEYYSGRFLVVASG  146 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~--~~~~~~~~ad~vIlAtG  146 (303)
                      ++.+..++.|++.  ++++++++++..+  +.+.+.......+.  ..... ..+|.|++|+|
T Consensus        68 ~~~~~l~~~Gv~i--~~~~~v~~i~~~~--~g~~v~~~~~~~g~~~~~~~~-~~~D~vl~a~G  125 (125)
T d3grsa2          68 NCTEELENAGVEV--LKFSQVKEVKKTL--SGLEVSMVTAVPGRLPVMTMI-PDVDCLLWAIG  125 (125)
T ss_dssp             HHHHHHHHTTCEE--ETTEEEEEEEEET--TEEEEEEEECCTTSCCEEEEE-EEESEEEECSC
T ss_pred             HHHHHHHHCCCEE--EeCCEEEEEEEcC--CeEEEEEEEccCCcCcCcccc-ccCCEEEEEeC
Confidence            8999889888777  9999999998876  45655544332221  01235 68999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.33  E-value=9.4e-12  Score=89.57  Aligned_cols=97  Identities=14%  Similarity=0.127  Sum_probs=76.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhh---CCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSL---QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ   82 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~---~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (303)
                      .+++++|||||+.|+.+|..|.+   .|.+|+++|+.+.+.                      +         .+  ..+
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il----------------------~---------~~--d~~   63 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL----------------------R---------GF--DSE   63 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS----------------------T---------TS--CHH
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc----------------------c---------cc--cch
Confidence            45799999999999999986655   488999999987531                      1         10  136


Q ss_pred             HHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090           83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (303)
Q Consensus        83 l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG  146 (303)
                      +.+++++..++.+++.  ++++.|++++..+ ++...+.+.++       .+ +.||.||+|+|
T Consensus        64 ~~~~~~~~l~~~GI~v--~~~~~v~~i~~~~-~g~~~v~~~~g-------~~-i~~D~Vi~a~G  116 (117)
T d1feca2          64 LRKQLTEQLRANGINV--RTHENPAKVTKNA-DGTRHVVFESG-------AE-ADYDVVMLAIG  116 (117)
T ss_dssp             HHHHHHHHHHHTTEEE--EETCCEEEEEECT-TSCEEEEETTS-------CE-EEESEEEECSC
T ss_pred             hhHHHHHHHhhCcEEE--EcCCEEEEEEECC-CCEEEEEECCC-------CE-EEcCEEEEecC
Confidence            8889999999888766  9999999998765 34556777765       57 89999999999

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.33  E-value=6.6e-12  Score=106.75  Aligned_cols=139  Identities=16%  Similarity=0.114  Sum_probs=84.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC--------C--------CCceEE------------e
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------S--------YDRLRL------------H   57 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~--------~--------~~~~~~------------~   57 (303)
                      +.+||+|||+|++|+++|..|+++|.+|+|+||.+..||.....        .        .+....            .
T Consensus        22 et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~  101 (322)
T d1d4ca2          22 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIN  101 (322)
T ss_dssp             EECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhcccccc
Confidence            35799999999999999999999999999999998777632110        0        000000            0


Q ss_pred             cC--------------ccc----ccCC------CCCCCCC---CCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEE
Q 022090           58 LA--------------KQF----CQLP------HLPFPSS---YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS  110 (303)
Q Consensus        58 ~~--------------~~~----~~~~------~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~  110 (303)
                      .+              ..+    ..+.      ....+..   .........+...+...+.+.++++  ++++.|+++.
T Consensus       102 d~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i--~~~t~v~~li  179 (322)
T d1d4ca2         102 DPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDI--RLNSRVVRIL  179 (322)
T ss_dssp             CHHHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEE--ETTEEEEEEE
T ss_pred             CHHHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceE--EEeeeccccc
Confidence            00              000    0000      0000000   0011235677888888888888665  9999999987


Q ss_pred             EeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090          111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                      .+++....-|...+..+   +... +.++.||+|||.++.
T Consensus       180 ~d~~G~V~Gv~~~~~~~---~~~~-i~Ak~VIlAtGG~~~  215 (322)
T d1d4ca2         180 EDASGKVTGVLVKGEYT---GYYV-IKADAVVIAAGGFAK  215 (322)
T ss_dssp             CCSSSCCCEEEEEETTT---EEEE-EECSEEEECCCCCTT
T ss_pred             ccccccccceEEEeecc---cEEE-EeCCeEEEcCCCccc
Confidence            76533323344443222   3356 899999999996553

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.33  E-value=6.1e-12  Score=91.41  Aligned_cols=100  Identities=12%  Similarity=0.026  Sum_probs=78.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .+.+++|||||+.|+.+|..+++.|.+|+++|+.+.+-..+                                 ..++.+
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~---------------------------------d~~~~~   71 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGA---------------------------------DRDLVK   71 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS---------------------------------CHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccc---------------------------------hhhHHH
Confidence            45799999999999999999999999999999987542110                                 137888


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG  146 (303)
                      ++.+..++.++..  ++++++++++..+  +...+.+.+..+   +.++ +++|.|++|+|
T Consensus        72 ~l~~~l~~~gv~~--~~~~~v~~v~~~~--~g~~v~~~~~~g---~~~~-i~~D~vl~A~G  124 (125)
T d1ojta2          72 VWQKQNEYRFDNI--MVNTKTVAVEPKE--DGVYVTFEGANA---PKEP-QRYDAVLVAAG  124 (125)
T ss_dssp             HHHHHHGGGEEEE--ECSCEEEEEEEET--TEEEEEEESSSC---CSSC-EEESCEEECCC
T ss_pred             HHHHHHHHcCccc--ccCcEEEEEEEcC--CcEEEEEEeCCC---CeEE-EEcCEEEEecC
Confidence            8888888888666  9999999998877  445566654322   2246 89999999999

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=2.1e-11  Score=88.18  Aligned_cols=102  Identities=18%  Similarity=0.102  Sum_probs=78.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .+.+++|||||+.|+.+|..|++.|.+|+|++++..+.                       .+           ..++.+
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~-----------------------~~-----------D~~~~~   64 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR-----------------------GF-----------DQDMAN   64 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSST-----------------------TS-----------CHHHHH
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhc-----------------------cC-----------CHHHHH
Confidence            45799999999999999999999999999998754221                       11           137889


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCC--CCeEEEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEA--TNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG  146 (303)
                      ++.+..++.|+++  ++++.|++++..+.  .+...+....+++.  +... ..+|.|++|+|
T Consensus        65 ~l~~~l~~~Gv~i--~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~-~~~D~vl~AiG  122 (122)
T d1h6va2          65 KIGEHMEEHGIKF--IRQFVPTKIEQIEAGTPGRLKVTAKSTNSE--ETIE-DEFNTVLLAVG  122 (122)
T ss_dssp             HHHHHHHHTTEEE--EESCEEEEEEEEECSTTCEEEEEEECTTSC--EEEE-EEESEEECCCC
T ss_pred             HHHHHHHHCCCEE--EECCEEEEEEEecCCCccEEEEEEEECCCC--cEEE-EECCEEEEEeC
Confidence            9999999999776  99999999976442  34556666655443  4445 68999999998

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.32  E-value=4.3e-12  Score=91.75  Aligned_cols=92  Identities=21%  Similarity=0.303  Sum_probs=73.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .++++|||||+.|+.+|..|++.|.+|+++|+.+.+-..                                ....++.++
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~--------------------------------~~~~~~~~~   77 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR--------------------------------AAPATLADF   77 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT--------------------------------TSCHHHHHH
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccc--------------------------------cCCHHHHHH
Confidence            479999999999999999999999999999998753100                                011377888


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG  146 (303)
                      +++..+..|++.  ++++.|+++..    +  .+.+.++       .+ +.+|.||+|+|
T Consensus        78 ~~~~l~~~GV~i--~~~~~v~~~~~----~--~v~l~dg-------~~-i~~D~vi~a~G  121 (121)
T d1d7ya2          78 VARYHAAQGVDL--RFERSVTGSVD----G--VVLLDDG-------TR-IAADMVVVGIG  121 (121)
T ss_dssp             HHHHHHTTTCEE--EESCCEEEEET----T--EEEETTS-------CE-EECSEEEECSC
T ss_pred             HHHHHHHCCcEE--EeCCEEEEEeC----C--EEEECCC-------CE-EECCEEEEeeC
Confidence            888888888766  89999987642    2  3566664       57 89999999998

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.32  E-value=6.9e-12  Score=106.43  Aligned_cols=138  Identities=13%  Similarity=0.139  Sum_probs=86.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC------C----------CCceEEe------------
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY------S----------YDRLRLH------------   57 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~------~----------~~~~~~~------------   57 (303)
                      +.+||+|||+|++||++|..|+++|.+|+|+||.+..||.-...      .          .+.....            
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~   97 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQN   97 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhcccc
Confidence            45799999999999999999999999999999998776532110      0          0000000            


Q ss_pred             -----------cCc---cc----ccCCC------CCCCCC---CCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEE
Q 022090           58 -----------LAK---QF----CQLPH------LPFPSS---YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS  110 (303)
Q Consensus        58 -----------~~~---~~----~~~~~------~~~~~~---~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~  110 (303)
                                 .+.   .+    ..|..      ...+..   .........+...|.+.+++.+...  ++++.++.+.
T Consensus        98 d~~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i--~~~~~v~~l~  175 (317)
T d1qo8a2          98 DIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDT--RLNSRVVKLV  175 (317)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCE--ECSEEEEEEE
T ss_pred             chhHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhcccee--eeccchhhee
Confidence                       000   00    00000      000000   0111234578888988899888776  9999999987


Q ss_pred             EeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090          111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      .+++....-+...+..+   +... +.++.||+|||.++
T Consensus       176 ~~~~g~V~Gv~~~~~~~---~~~~-i~Ak~VVlAtGG~~  210 (317)
T d1qo8a2         176 VNDDHSVVGAVVHGKHT---GYYM-IGAKSVVLATGGYG  210 (317)
T ss_dssp             ECTTSBEEEEEEEETTT---EEEE-EEEEEEEECCCCCT
T ss_pred             ecccccceeeEeecccc---eEEE-EeccceEEeccccc
Confidence            76643334455544322   3356 89999999999654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.31  E-value=7.3e-14  Score=110.27  Aligned_cols=43  Identities=16%  Similarity=0.336  Sum_probs=39.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCCCCCccCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKK   48 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~   48 (303)
                      .+++|+|||||++||++|..|+++|+ +|+|||+.+.+||.|..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~   46 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS   46 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHH
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhh
Confidence            35799999999999999999999998 59999999999988764

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.31  E-value=3.4e-12  Score=105.13  Aligned_cols=131  Identities=14%  Similarity=0.027  Sum_probs=75.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC---------------CCCceEEecCcc--cccCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY---------------SYDRLRLHLAKQ--FCQLPHL   68 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~---------------~~~~~~~~~~~~--~~~~~~~   68 (303)
                      ...+|+|||||++|+++|..|+++|++|+||||++..+..+...               ............  ...+...
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG   82 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence            45799999999999999999999999999999976543222110               000000000000  0000000


Q ss_pred             CCC---CCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEcc
Q 022090           69 PFP---SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVAS  145 (303)
Q Consensus        69 ~~~---~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAt  145 (303)
                      ...   ...........+..  .......+..  +++++.+++++...  +.+++++.++       .+ +++|.+|.|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~v~~~~~~~--~~v~v~~~dG-------~~-~~~d~~v~ad  148 (265)
T d2voua1          83 ERVGSVPADWRFTSYDSIYG--GLYELFGPER--YHTSKCLVGLSQDS--ETVQMRFSDG-------TK-AEANWVIGAD  148 (265)
T ss_dssp             CEEEEEECCCCEEEHHHHHH--HHHHHHCSTT--EETTCCEEEEEECS--SCEEEEETTS-------CE-EEESEEEECC
T ss_pred             ceecccccccccchhHHHHH--HHHHhcccce--eecCcEEEEEEeeC--CceEEEECCC-------CE-EEEEEEeccc
Confidence            000   00000111122211  1222223333  48999999998866  5688988875       57 8999999999


Q ss_pred             CCCCC
Q 022090          146 GETTN  150 (303)
Q Consensus       146 G~~~~  150 (303)
                      |.++.
T Consensus       149 G~~s~  153 (265)
T d2voua1         149 GGASV  153 (265)
T ss_dssp             CTTCH
T ss_pred             ccccc
Confidence            97664

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.30  E-value=1.6e-12  Score=105.22  Aligned_cols=70  Identities=27%  Similarity=0.558  Sum_probs=64.2

Q ss_pred             CCCCCCCCCccccccCCCCCccEEecccCC-CCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh
Q 022090          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYK-NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (303)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~  225 (303)
                      .|++|++||.+.|      +|.++|+.+|. ....+++|+|+|||+|.||+|+|.+++..+++++++.|++.++.+.
T Consensus         1 vP~iP~~pG~e~F------~G~v~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~~~~~~   71 (235)
T d1w4xa2           1 VPQLPNFPGLKDF------AGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPA   71 (235)
T ss_dssp             CCCCCCCTTGGGC------CSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEEC
T ss_pred             CCCCCCCCChhhC------CCcEEecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccceeeee
Confidence            3889999999999      99999999995 4567899999999999999999999999999999999999888764

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.30  E-value=2e-11  Score=88.55  Aligned_cols=100  Identities=11%  Similarity=0.141  Sum_probs=78.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .+.+++|||||+.|+.+|..|.+.|.+|+++++.+.+-                      +.           -..++.+
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l----------------------~~-----------~d~~~~~   70 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV----------------------PT-----------MDAEIRK   70 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS----------------------TT-----------SCHHHHH
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC----------------------ch-----------hhhcchh
Confidence            45799999999999999999999999999999987531                      00           0137888


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEcc
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVAS  145 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAt  145 (303)
                      ++.+..++.|++.  ++++++.+++..+  +..++.+....++  ++.+ +++|.|++|.
T Consensus        71 ~l~~~l~~~GI~i--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-i~~D~vLvAA  123 (123)
T d1dxla2          71 QFQRSLEKQGMKF--KLKTKVVGVDTSG--DGVKLTVEPSAGG--EQTI-IEADVVLVSA  123 (123)
T ss_dssp             HHHHHHHHSSCCE--ECSEEEEEEECSS--SSEEEEEEESSSC--CCEE-EEESEEECCC
T ss_pred             hhhhhhhcccceE--EcCCceEEEEEcc--CeEEEEEEECCCC--eEEE-EEcCEEEEcC
Confidence            9999999999777  9999999998765  4455555443222  3367 8999999873

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.30  E-value=6.6e-13  Score=94.09  Aligned_cols=65  Identities=26%  Similarity=0.439  Sum_probs=56.3

Q ss_pred             CCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          153 TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       153 ~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|.+||++.|  +.+..|.++|+..|+++..+++|+|+|||+|+||+|+|.+|+..+++++++.|++
T Consensus         1 iP~ipGl~~f--~~~~~G~i~Hs~~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2           1 IPNIKGLDEY--AKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             BCCCBTHHHH--HHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CcCCCChHHH--hccCCccEEECCcCcchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            4789998766  0001389999999999999999999999999999999999999999998888887

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.28  E-value=3.3e-11  Score=87.22  Aligned_cols=100  Identities=13%  Similarity=0.079  Sum_probs=76.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+.                      +.           ...++.++
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l----------------------~~-----------~d~~~~~~   68 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK----------------------LI-----------KDNETRAY   68 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT----------------------TC-----------CSHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh----------------------cc-----------cccchhhh
Confidence            4799999999999999999999999999999987532                      00           01267788


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG  146 (303)
                      +.+..++.+++.  ++++.++.++.+++.....+......    ..++ +++|.||+|+|
T Consensus        69 ~~~~l~~~gI~v--~~~~~v~~i~~~~~~~~~~~~~~~~~----~~~~-i~~D~Vi~a~G  121 (121)
T d1mo9a2          69 VLDRMKEQGMEI--ISGSNVTRIEEDANGRVQAVVAMTPN----GEMR-IETDFVFLGLG  121 (121)
T ss_dssp             HHHHHHHTTCEE--ESSCEEEEEEECTTSBEEEEEEEETT----EEEE-EECSCEEECCC
T ss_pred             hhhhhhccccEE--EcCCEEEEEEecCCceEEEEEEEeCC----CCEE-EEcCEEEEEEC
Confidence            888888888776  99999999998763332233332222    2267 89999999998

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=8.2e-12  Score=97.91  Aligned_cols=112  Identities=13%  Similarity=0.309  Sum_probs=79.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      +++||+|||||++||+||..|++.|.+|+|+|+.+..|.+....           .   ...++   .++......++.+
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~-----------~---i~~~~---~~~~~~~~~~~~~   66 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTT-----------E---VENWP---GDPNDLTGPLLME   66 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCS-----------B---CCCST---TCCSSCBHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccc-----------h---hhhhh---ccccccchHHHHH
Confidence            45799999999999999999999999999999877544322110           0   00000   1223345678888


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~  148 (303)
                      .....+.+++...  .+ .+|+.+...+  +.+.+....        .. +.++.+++++|..
T Consensus        67 ~~~~~~~~~~~~~--~~-~~V~~~~~~~--~~~~v~~~~--------~~-~~~~~viva~G~~  115 (190)
T d1trba1          67 RMHEHATKFETEI--IF-DHINKVDLQN--RPFRLNGDN--------GE-YTCDALIIATGAS  115 (190)
T ss_dssp             HHHHHHHHTTCEE--EC-CCEEEEECSS--SSEEEEESS--------CE-EEEEEEEECCCEE
T ss_pred             HHHHHHHhcCcEE--ec-ceeEEEecCC--CcEEEEEee--------ee-Eeeeeeeeeccee
Confidence            8888888888654  43 4677777655  567776654        46 7899999999953

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.27  E-value=2.9e-11  Score=86.76  Aligned_cols=94  Identities=16%  Similarity=0.131  Sum_probs=76.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +++|+|||||+.|+.+|..|++.|.+|+++++.+.+-                      +         .+  ..++.++
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il----------------------~---------~~--d~~~~~~   68 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL----------------------R---------KF--DESVINV   68 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC----------------------T---------TS--CHHHHHH
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcccc----------------------c---------cc--cHHHHHH
Confidence            5789999999999999999999999999999987531                      1         01  1378899


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEE-eeCEEEEc
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY-SGRFLVVA  144 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~-~ad~vIlA  144 (303)
                      +.+..++.|+..  +++++|++++..++ +..++.+.++       +. + .+|.||+|
T Consensus        69 ~~~~l~~~gV~i--~~~~~v~~i~~~~~-~~~~v~~~~G-------~~-~~~~D~Vi~A  116 (117)
T d1onfa2          69 LENDMKKNNINI--VTFADVVEIKKVSD-KNLSIHLSDG-------RI-YEHFDHVIYC  116 (117)
T ss_dssp             HHHHHHHTTCEE--ECSCCEEEEEESST-TCEEEEETTS-------CE-EEEESEEEEC
T ss_pred             HHHHHHhCCCEE--EECCEEEEEEEcCC-CeEEEEECCC-------CE-EEeCCEEEEe
Confidence            999888888776  99999999987663 4577888775       33 4 57999998

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.27  E-value=6.2e-11  Score=98.17  Aligned_cols=138  Identities=19%  Similarity=0.180  Sum_probs=79.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCCCCCccCcC--------------C----------CCceEEecC--
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKY--------------S----------YDRLRLHLA--   59 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~--------------~----------~~~~~~~~~--   59 (303)
                      +.||+|||||++||++|..|+++|+ +|+|+|+++.++..+..-              .          .........  
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g   80 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   80 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCC
Confidence            3699999999999999999999996 899999988765433210              0          000000000  


Q ss_pred             cccccCCCCCCCC-CCCCC-CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEe
Q 022090           60 KQFCQLPHLPFPS-SYPMF-VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS  137 (303)
Q Consensus        60 ~~~~~~~~~~~~~-~~~~~-~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~  137 (303)
                      .....+....... ..+.+ .........+............+.++++++.+...+  +.+.+.+.++.+   +..+ +.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~v~v~~~~g~~---~~~~-~~  154 (288)
T d3c96a1          81 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERD--GRVLIGARDGHG---KPQA-LG  154 (288)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEET--TEEEEEEEETTS---CEEE-EE
T ss_pred             CEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecC--CcEEEEEEcCCC---CeEE-Ee
Confidence            0000000000000 00111 122222333222222221223348899999988776  667888877644   3367 89


Q ss_pred             eCEEEEccCCCCC
Q 022090          138 GRFLVVASGETTN  150 (303)
Q Consensus       138 ad~vIlAtG~~~~  150 (303)
                      +|.||.|.|.+|.
T Consensus       155 ad~vi~ADG~~S~  167 (288)
T d3c96a1         155 ADVLVGADGIHSA  167 (288)
T ss_dssp             ESEEEECCCTTCH
T ss_pred             eceeeccCCccce
Confidence            9999999997664

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.26  E-value=1.3e-11  Score=103.84  Aligned_cols=60  Identities=13%  Similarity=0.081  Sum_probs=46.4

Q ss_pred             CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        78 ~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      .+...+...+.+.+++.++.+  +.+++|+++..++ +..+.|.+.+        .+ ++||+||+|+|.++
T Consensus       145 ~~p~~l~~~l~~~a~~~gv~i--~~~~~V~~i~~~~-~~v~~V~T~~--------g~-i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         145 ASAARAVQLLIKRTESAGVTY--RGSTTVTGIEQSG-GRVTGVQTAD--------GV-IPADIVVSCAGFWG  204 (305)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEE--ECSCCEEEEEEET-TEEEEEEETT--------EE-EECSEEEECCGGGH
T ss_pred             cchhhhhhhHHhhhhcccccc--cCCceEEEEEEeC-CEEEEEeccc--------ee-EECCEEEEecchhH
Confidence            346778888888888888766  9999999999876 2234466654        57 89999999999754

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.6e-11  Score=89.68  Aligned_cols=96  Identities=15%  Similarity=0.091  Sum_probs=77.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhh----CCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSL----QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ   82 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~----~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (303)
                      .++++|||||+.|+.+|..|.+    .|.+|+++++++.+..                               ... ..+
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~-------------------------------~~~-~~~   84 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG-------------------------------KIL-PEY   84 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT-------------------------------TTS-CHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc-------------------------------ccC-CHH
Confidence            4689999999999999998864    5899999999875310                               000 136


Q ss_pred             HHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090           83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (303)
Q Consensus        83 l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG  146 (303)
                      +.+++.+..+..|++.  ++++.|++++.++  +...+++.++       ++ +.+|.||+|+|
T Consensus        85 ~~~~~~~~l~~~GV~~--~~~~~V~~i~~~~--~~~~v~l~~G-------~~-i~aD~Vi~A~G  136 (137)
T d1m6ia2          85 LSNWTMEKVRREGVKV--MPNAIVQSVGVSS--GKLLIKLKDG-------RK-VETDHIVAAVG  136 (137)
T ss_dssp             HHHHHHHHHHTTTCEE--ECSCCEEEEEEET--TEEEEEETTS-------CE-EEESEEEECCC
T ss_pred             HHHHHHHHHHhCCcEE--EeCCEEEEEEecC--CEEEEEECCC-------CE-EECCEEEEeec
Confidence            7788888888888777  9999999998876  6677888775       57 89999999999

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.25  E-value=1e-11  Score=104.06  Aligned_cols=37  Identities=35%  Similarity=0.439  Sum_probs=35.7

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      ||+|||||++||++|..|+++|++|+|+|+++.+||.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~   38 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGA   38 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTT
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCce
Confidence            8999999999999999999999999999999999984

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.23  E-value=2.8e-12  Score=92.16  Aligned_cols=71  Identities=23%  Similarity=0.270  Sum_probs=55.3

Q ss_pred             CCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHH
Q 022090          153 TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGV  232 (303)
Q Consensus       153 ~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~  232 (303)
                      +|++||.+..          +.+.++....  .+++++|||+|++|+|+|..|+++|.+||+++|++ ++||.++.+++.
T Consensus         1 ~P~IpG~e~~----------~ts~~~~~l~--~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~-~il~~~d~~~~~   67 (117)
T d1onfa2           1 FPPVKGIENT----------ISSDEFFNIK--ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN-RILRKFDESVIN   67 (117)
T ss_dssp             CCSCTTGGGC----------EEHHHHTTCC--CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS-SSCTTSCHHHHH
T ss_pred             CcccCCHhHc----------CchhHHhccC--CCCEEEEECCchHHHHHHHHHHhccccceeeehhc-cccccccHHHHH
Confidence            5788997643          5565554422  37999999999999999999999999999999999 677776655554


Q ss_pred             HHHh
Q 022090          233 VLFK  236 (303)
Q Consensus       233 ~~~~  236 (303)
                      .+.+
T Consensus        68 ~~~~   71 (117)
T d1onfa2          68 VLEN   71 (117)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.23  E-value=9e-12  Score=104.21  Aligned_cols=136  Identities=16%  Similarity=0.077  Sum_probs=80.8

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC-------CccCcC-------------------CCCceEEecCcc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-------SIWKKY-------------------SYDRLRLHLAKQ   61 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g-------g~w~~~-------------------~~~~~~~~~~~~   61 (303)
                      .||+|||||++||++|..|+++|++|+|+|+.+..+       +.+..+                   .+..........
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~   82 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEeccc
Confidence            599999999999999999999999999999986321       111100                   011111111100


Q ss_pred             cccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCE
Q 022090           62 FCQLPHLP-FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRF  140 (303)
Q Consensus        62 ~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~  140 (303)
                      ........ .........++..+.+.+.+.++..+...  .+...++.....+ .+...|+..+++    ++.+ +.||+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~v~~~~~g----~~~~-i~a~~  154 (292)
T d1k0ia1          83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATT--VYQAAEVRLHDLQ-GERPYVTFERDG----ERLR-LDCDY  154 (292)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEE--ESSCEEEEEECTT-SSSCEEEEEETT----EEEE-EECSE
T ss_pred             ccccccccccccccceeecHHHHHHHHHHHHHhCCCcE--EEcceeeeeeeec-cCceEEEEecCC----cEEE-EEeCE
Confidence            00000000 00011223467788888888888877544  6666555544433 244556655432    3357 89999


Q ss_pred             EEEccCCCCCC
Q 022090          141 LVVASGETTNP  151 (303)
Q Consensus       141 vIlAtG~~~~p  151 (303)
                      ||.|+|.+|.-
T Consensus       155 vVgADG~~S~v  165 (292)
T d1k0ia1         155 IAGCDGFHGIS  165 (292)
T ss_dssp             EEECCCTTCST
T ss_pred             EEECCCCCCcc
Confidence            99999987753

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.22  E-value=2e-11  Score=97.23  Aligned_cols=121  Identities=16%  Similarity=0.134  Sum_probs=69.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC-CCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~-~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .|||+|||||+||++||..+++.|.+++||+++. .+|.+..+.   .........+..       .....-+....+..
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp---~~gg~~kg~l~r-------eid~kG~av~a~ra   71 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPP---KPPFPPGSLLER-------AYDPKDERVWAFHA   71 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCC---CSCCCTTCHHHH-------HCCTTCCCHHHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCC---ccccCCCcceee-------eeeccchhhhhHHH
Confidence            4899999999999999999999999999999873 333321110   000000000000       00011111122323


Q ss_pred             HHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           86 HLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        86 ~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      ..++.+... ++.   .++.+|+++..++ +....|.+.++       .+ +.++.||+|||.+.
T Consensus        72 Q~k~~l~~~~nL~---i~q~~V~dli~e~-~~v~gV~t~~G-------~~-~~AkaVILtTGTFL  124 (230)
T d2cula1          72 RAKYLLEGLRPLH---LFQATATGLLLEG-NRVVGVRTWEG-------PP-ARGEKVVLAVGSFL  124 (230)
T ss_dssp             HHHHHHHTCTTEE---EEECCEEEEEEET-TEEEEEEETTS-------CC-EECSEEEECCTTCS
T ss_pred             HHHHHHhhhcCHH---HHhccceeeEecc-cceeeEEeccc-------cE-EEEeEEEEccCcce
Confidence            333333332 333   4566777877665 23455777665       56 89999999999543

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.21  E-value=7.6e-11  Score=100.14  Aligned_cols=42  Identities=26%  Similarity=0.324  Sum_probs=38.5

Q ss_pred             CCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         4 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      ...+++|+|||||++||++|..|+++|++|+|||+++.+||.
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~   68 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGR   68 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTT
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCe
Confidence            345689999999999999999999999999999999999983

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.20  E-value=5.1e-11  Score=86.32  Aligned_cols=94  Identities=18%  Similarity=0.274  Sum_probs=72.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      ..++|+|||||+.|+.+|..|++.|.+|+++|+.+.+-                               +.+.+ .++.+
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l-------------------------------~~~~d-~~~~~   76 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPL-------------------------------GVYLD-KEFTD   76 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-------------------------------TTTCC-HHHHH
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCccc-------------------------------ccccc-hhhHH
Confidence            35699999999999999999999999999999987531                               00111 36788


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEc
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA  144 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlA  144 (303)
                      ++.++.+..+++.  ++++.+++++.++  ....+ ..++       .+ +++|.||+|
T Consensus        77 ~~~~~l~~~gv~~--~~~~~v~~i~~~~--~~~~v-~~dg-------~~-i~~D~vi~a  122 (123)
T d1nhpa2          77 VLTEEMEANNITI--ATGETVERYEGDG--RVQKV-VTDK-------NA-YDADLVVVA  122 (123)
T ss_dssp             HHHHHHHTTTEEE--EESCCEEEEECSS--BCCEE-EESS-------CE-EECSEEEEC
T ss_pred             HHHHHhhcCCeEE--EeCceEEEEEcCC--CEEEE-EeCC-------CE-EECCEEEEE
Confidence            8888888888766  9999999997543  33334 3443       57 899999997

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.20  E-value=2.1e-11  Score=95.70  Aligned_cols=117  Identities=9%  Similarity=0.124  Sum_probs=78.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE   85 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (303)
                      .++||+|||||++|++||..|++.|.+++++|+...........            .............+......++..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~el~~   71 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQ------------LTTTTDVENFPGFPEGILGVELTD   71 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCG------------GGGCSEECCSTTCTTCEEHHHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccc------------cccchhhhccccccccccchHHHH
Confidence            45899999999999999999999999999999865432110000            000000000111233445788999


Q ss_pred             HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090           86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET  148 (303)
Q Consensus        86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~  148 (303)
                      .+.+.+++++.+.  .++ +|++++...  ..+.+....        .. +.+|.+++++|..
T Consensus        72 ~~~~q~~~~g~~i--~~~-~V~~~~~~~--~~~~v~~~~--------~~-~~~~~~~~a~g~~  120 (192)
T d1vdca1          72 KFRKQSERFGTTI--FTE-TVTKVDFSS--KPFKLFTDS--------KA-ILADAVILAIGAV  120 (192)
T ss_dssp             HHHHHHHHTTCEE--ECC-CCCEEECSS--SSEEEECSS--------EE-EEEEEEEECCCEE
T ss_pred             HHHHHHHhhccee--eee-eEEeccccc--CcEEecccc--------ee-eeeeeEEEEeeee
Confidence            9999899998754  444 577777654  456666554        56 7899999999953

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.19  E-value=2.1e-10  Score=82.27  Aligned_cols=95  Identities=12%  Similarity=0.068  Sum_probs=75.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhC---CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHH
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ   82 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (303)
                      .+.+++|||||+.|+.+|..|...   +.+|+++|+.+.+-                      +.+           ..+
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL----------------------~~~-----------d~~   65 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL----------------------RGF-----------DHT   65 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS----------------------TTS-----------CHH
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh----------------------ccc-----------chH
Confidence            357999999999999999877655   45799999987531                      111           137


Q ss_pred             HHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEc
Q 022090           83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA  144 (303)
Q Consensus        83 l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlA  144 (303)
                      +.+++.+..++.|++.  ++++++++++... ++...+.++++       ++ ++||.||+|
T Consensus        66 ~~~~l~~~l~~~GV~v--~~~~~v~~ie~~~-~~~~~v~~~~G-------~~-i~~D~Vi~A  116 (117)
T d1aoga2          66 LREELTKQLTANGIQI--LTKENPAKVELNA-DGSKSVTFESG-------KK-MDFDLVMMA  116 (117)
T ss_dssp             HHHHHHHHHHHTTCEE--EESCCEEEEEECT-TSCEEEEETTS-------CE-EEESEEEEC
T ss_pred             HHHHHHHHHHhcCcEE--EcCCEEEEEEEcC-CCeEEEEECCC-------cE-EEeCEEEEe
Confidence            8899999999989777  9999999998765 35577888775       57 899999998

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=3.1e-11  Score=93.88  Aligned_cols=111  Identities=14%  Similarity=0.225  Sum_probs=70.7

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   87 (303)
                      |||+||||||+|++||..+++.|.+|+|+|++  .||.+... +   ..      ..++..+       ......+...+
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~~-~---~~------~~~~~~~-------~~~~~~~~~~~   62 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDT-V---DI------ENYISVP-------KTEGQKLAGAL   62 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGC-C---EE------CCBTTBS-------SEEHHHHHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCccccc-c---cc------eeccccc-------hhhhHHHHHHH
Confidence            79999999999999999999999999999975  45544321 0   00      0011110       12345677777


Q ss_pred             HHHHHHcCCCceeEeCeEEEEEEEeCCCC-eEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           88 DHYVSHFNIGPSIRYQRSVESASYDEATN-MWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        88 ~~~~~~~~l~~~i~~~~~V~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      ...++.++.+.  .....+..+....... .+.....+.       .. +.++.+++++|.
T Consensus        63 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~g~  113 (184)
T d1fl2a1          63 KVHVDEYDVDV--IDSQSASKLIPAAVEGGLHQIETASG-------AV-LKARSIIVATGA  113 (184)
T ss_dssp             HHHHHTSCEEE--ECSCCEEEEECCSSTTCCEEEEETTS-------CE-EEEEEEEECCCE
T ss_pred             HHHhhheecee--eccceeeeecccccccceeeeeeecc-------ee-eecccccccccc
Confidence            77777776544  5555566665443222 222333221       46 789999999994

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.15  E-value=4.7e-11  Score=86.42  Aligned_cols=88  Identities=17%  Similarity=0.223  Sum_probs=69.5

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   87 (303)
                      ++++|||||+.|+.+|..|++.|.+|+++|+.+.+.+                                +  ..++.+++
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--------------------------------~--d~~~~~~~   78 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--------------------------------L--DEELSNMI   78 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--------------------------------C--CHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--------------------------------C--CHHHHHHH
Confidence            6899999999999999999999999999999875310                                0  13677888


Q ss_pred             HHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090           88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (303)
Q Consensus        88 ~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG  146 (303)
                      .+..++.|++.  ++++++++++.+     . +.. ++       .. +++|.||+|+|
T Consensus        79 ~~~l~~~GV~~--~~~~~v~~~~~~-----~-v~~-~~-------~~-i~~D~vi~a~G  120 (122)
T d1xhca2          79 KDMLEETGVKF--FLNSELLEANEE-----G-VLT-NS-------GF-IEGKVKICAIG  120 (122)
T ss_dssp             HHHHHHTTEEE--ECSCCEEEECSS-----E-EEE-TT-------EE-EECSCEEEECC
T ss_pred             HHHHHHCCcEE--EeCCEEEEEeCC-----E-EEe-CC-------CE-EECCEEEEEEE
Confidence            88888888666  899999887432     1 222 32       57 89999999999

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.14  E-value=9.8e-11  Score=97.25  Aligned_cols=138  Identities=12%  Similarity=0.038  Sum_probs=80.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhh-CCCCeEEEecCCCCCCccCcC--CCCceEEecCcccc----cCCCCCCCCCCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSL-QSIPYVILERENCYASIWKKY--SYDRLRLHLAKQFC----QLPHLPFPSSYPMFVS   79 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~-~g~~v~iie~~~~~gg~w~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~   79 (303)
                      .+||+|||||++||++|..|++ .|++|+|+|+++.+||.|...  .|+...+.......    .......+........
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  112 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA  112 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceeccc
Confidence            4799999999999999999987 599999999999999876542  34444443322111    0111111111222334


Q ss_pred             HHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEee-----c-CCCCceeEEEEeeCEEEEccCC
Q 022090           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN-----L-LSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        80 ~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~-----~-~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      ...+..++...+...+...  ..++.+..+...+..-...+....     . ......... +.++.+|.|+|.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~-~~a~~vv~a~G~  183 (278)
T d1rp0a1         113 ALFTSTIMSKLLARPNVKL--FNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNV-MEAKIVVSSCGH  183 (278)
T ss_dssp             HHHHHHHHHHHHTSTTEEE--EETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEE-EEEEEEEECCCS
T ss_pred             HHHHHHHHHHHHHhCCCEE--EeCCcceeeeecCCeEEEEEeccceeeeeeccccccccee-eccceEEECcCC
Confidence            5556666666665444333  777777777665411111111100     0 000012256 889999999995

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.13  E-value=6.9e-10  Score=94.40  Aligned_cols=64  Identities=8%  Similarity=0.149  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090           80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT  149 (303)
Q Consensus        80 ~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~  149 (303)
                      ...+...+.+.+++.++.+  +.++++.++..++ +....+...+..++  +... +.++.||+|||.+.
T Consensus       157 G~~i~~~l~~~~~~~gv~i--~~~~~~~~li~~~-~~v~g~~~~~~~~g--~~~~-i~Ak~VvlATGG~~  220 (336)
T d2bs2a2         157 GHTMLFAVANECLKLGVSI--QDRKEAIALIHQD-GKCYGAVVRDLVTG--DIIA-YVAKGTLIATGGYG  220 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCEE--ECSEEEEEEEEET-TEEEEEEEEETTTC--CEEE-EECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHHhccccc--cceeeeeeccccc-ccccceeEEeccCC--cEEE-EecCeEEEeccccc
Confidence            4567777878888888766  8999999887765 23334444443333  4467 89999999999654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.12  E-value=2.1e-11  Score=88.55  Aligned_cols=64  Identities=17%  Similarity=0.147  Sum_probs=52.9

Q ss_pred             cEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHHh
Q 022090          171 EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFK  236 (303)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~~  236 (303)
                      .++.+.+..+ ....+++++|||+|++|+|+|..++++|.+||++++++ +++|..+.+++..+.+
T Consensus        12 ~i~ts~~~l~-l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~-~il~~~d~~~~~~l~~   75 (125)
T d1ojta2          12 RIIDSSGALA-LKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD-GLMQGADRDLVKVWQK   75 (125)
T ss_dssp             TEECHHHHTT-CCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTTSCHHHHHHHHH
T ss_pred             cEEcHHHhhC-ccccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec-cccccchhhHHHHHHH
Confidence            3566666655 45568999999999999999999999999999999999 8889887777655544

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.1e-11  Score=106.14  Aligned_cols=38  Identities=32%  Similarity=0.452  Sum_probs=36.1

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      ||+|||||++||++|..|+++|++|+|+|+++.+||..
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~   38 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRT   38 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccee
Confidence            79999999999999999999999999999999999843

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.10  E-value=4.4e-12  Score=102.54  Aligned_cols=41  Identities=22%  Similarity=0.251  Sum_probs=37.0

Q ss_pred             CcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKK   48 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~   48 (303)
                      ++|+|||||||||+||..|+++  |++|+|||+.+.+||.+.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~   44 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF   44 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence            4899999999999999999876  7799999999999998754

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.09  E-value=4.6e-10  Score=92.21  Aligned_cols=42  Identities=19%  Similarity=0.245  Sum_probs=38.7

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      +..||++|||||++|+.+|..|+++|.+|+++|+.+.+||.+
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c   81 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSC   81 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccc
Confidence            346899999999999999999999999999999999998854

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.09  E-value=2.3e-11  Score=87.45  Aligned_cols=64  Identities=22%  Similarity=0.296  Sum_probs=51.6

Q ss_pred             ccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHH
Q 022090          170 GEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLF  235 (303)
Q Consensus       170 g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~  235 (303)
                      +.++.+.+... ....|++++|||+|++|+|+|..++++|.+||+++|++ .++|..+.+++..+.
T Consensus         7 ~~i~~s~~~l~-~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~-~il~~~d~~~~~~l~   70 (117)
T d1ebda2           7 NRILDSTGALN-LGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG-EILSGFEKQMAAIIK   70 (117)
T ss_dssp             SSEECHHHHHT-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTSCHHHHHHHH
T ss_pred             CCEEChhHhhC-hhhcCCeEEEECCCccceeeeeeecccccEEEEEEecc-eecccccchhHHHHH
Confidence            34577666655 34567999999999999999999999999999999999 788887666655443

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.09  E-value=8.6e-11  Score=94.02  Aligned_cols=42  Identities=14%  Similarity=0.271  Sum_probs=39.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~   47 (303)
                      ..|||+||||||+|+++|..++++|.+|+|+|++..+||.|.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~   43 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL   43 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeee
Confidence            469999999999999999999999999999999999999764

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=1.6e-11  Score=88.16  Aligned_cols=52  Identities=25%  Similarity=0.174  Sum_probs=45.1

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHHh
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFK  236 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~~  236 (303)
                      ..+++++|||+|++|+|+|..|+++|.+||+++|++ +++|..+.+++.++++
T Consensus        19 ~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~-~~l~~~d~~~~~~~~~   70 (116)
T d1gesa2          19 ALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD-APLPSFDPMISETLVE   70 (116)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCHHHHHHHHH
T ss_pred             hCCCEEEEECCChhhHHHHHHhhccccEEEEEeecc-hhhhhcchhhHHHHHH
Confidence            457999999999999999999999999999999999 8888877666655444

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=7.1e-10  Score=94.25  Aligned_cols=44  Identities=23%  Similarity=0.311  Sum_probs=39.2

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      |+.+...+||+|||+|+|||++|.+++++|.+|+|+||.+..++
T Consensus         1 ~~~~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg   44 (330)
T d1neka2           1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS   44 (330)
T ss_dssp             CCCCEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGS
T ss_pred             CCCCcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence            66666779999999999999999999999999999999876554

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.03  E-value=4.6e-11  Score=86.57  Aligned_cols=64  Identities=14%  Similarity=0.181  Sum_probs=52.1

Q ss_pred             cEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHHh
Q 022090          171 EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFK  236 (303)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~~  236 (303)
                      .++++.+..+ ....|++++|||+|++|+|+|..++++|.+||+++|++ +++|..+.+++..+.+
T Consensus        11 ~v~ts~~~l~-l~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~-~~l~~~d~~~~~~l~~   74 (123)
T d1dxla2          11 KIVSSTGALA-LSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS-EIVPTMDAEIRKQFQR   74 (123)
T ss_dssp             SEECHHHHTT-CSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTTSCHHHHHHHHH
T ss_pred             eEEeHHHhhC-ccccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc-ccCchhhhcchhhhhh
Confidence            3566655554 44568999999999999999999999999999999999 7888877766655544

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=1.2e-10  Score=94.74  Aligned_cols=42  Identities=17%  Similarity=0.330  Sum_probs=39.6

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~   47 (303)
                      ..|||+|||||++|++||..|+++|++|+|+|+++.+||.++
T Consensus         4 ~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~   45 (297)
T d2bcgg1           4 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAA   45 (297)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceE
Confidence            469999999999999999999999999999999999999764

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=9.4e-11  Score=84.72  Aligned_cols=63  Identities=17%  Similarity=0.153  Sum_probs=52.0

Q ss_pred             EEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHHh
Q 022090          172 VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFK  236 (303)
Q Consensus       172 ~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~~  236 (303)
                      ++++.+..+ ....+++++|||+|++|+|+|..|+++|.+||+++|++ ++||.++.+++..+++
T Consensus        10 v~ts~~~~~-l~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~-~~l~~~d~ei~~~l~~   72 (122)
T d1v59a2          10 IVSSTGALS-LKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP-QIGASMDGEVAKATQK   72 (122)
T ss_dssp             EECHHHHTT-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSSSSCHHHHHHHHH
T ss_pred             EEehHHhhC-cccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEecc-ccchhhhhhhHHHHHH
Confidence            566665554 33457999999999999999999999999999999999 8889887777665544

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=8.7e-11  Score=85.34  Aligned_cols=62  Identities=24%  Similarity=0.211  Sum_probs=49.1

Q ss_pred             EecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHHh
Q 022090          173 IHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFK  236 (303)
Q Consensus       173 ~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~~  236 (303)
                      +++.+... ....+++++|||+|++|+|+|..|+++|.+||+++|++ ++||..+.+++..+.+
T Consensus        10 ~ts~~~~~-l~~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d~~~~~~~~~   71 (125)
T d3grsa2          10 ITSDGFFQ-LEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD-KVLRSFDSMISTNCTE   71 (125)
T ss_dssp             BCHHHHTT-CCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSCHHHHHHHHH
T ss_pred             CCHHHHhC-hhhcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc-ccccchhhHHHHHHHH
Confidence            44444443 33457999999999999999999999999999999999 7888776666655444

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.97  E-value=3.3e-11  Score=92.19  Aligned_cols=102  Identities=21%  Similarity=0.268  Sum_probs=62.1

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLD   88 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   88 (303)
                      +|+|||||++|+.+|..|++ +.+|+++++.+...       |....  .+..            .........+..+..
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~-------~~~~~--~~~~------------~~~~~~~~~~~~~~~   59 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPY-------YSKPM--LSHY------------IAGFIPRNRLFPYSL   59 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCC-------CCSTT--HHHH------------HTTSSCGGGGCSSCH
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccc-------ccccc--hhhh------------hhhhhhhhhhhHHHH
Confidence            79999999999999999975 77999999876421       10000  0000            001111122223334


Q ss_pred             HHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           89 HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        89 ~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      .+....+++.  ++++.|+.++...    . +...++       .+ +.||.||+|+|.
T Consensus        60 ~~~~~~~v~~--~~~~~v~~i~~~~----~-~~~~~~-------~~-i~~D~li~a~G~  103 (167)
T d1xhca1          60 DWYRKRGIEI--RLAEEAKLIDRGR----K-VVITEK-------GE-VPYDTLVLATGA  103 (167)
T ss_dssp             HHHHHHTEEE--ECSCCEEEEETTT----T-EEEESS-------CE-EECSEEEECCCE
T ss_pred             HHHHhcccee--eeecccccccccc----c-cccccc-------cc-cccceeEEEEEe
Confidence            4444556554  7888888886433    2 233332       56 899999999994

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=9.8e-10  Score=92.58  Aligned_cols=39  Identities=21%  Similarity=0.302  Sum_probs=33.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg   44 (303)
                      ..+||+|||+|+|||++|..++++  |.+|+|+||....+|
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g   44 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS   44 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGS
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCC
Confidence            358999999999999999999987  679999999875543

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.4e-11  Score=98.45  Aligned_cols=128  Identities=13%  Similarity=0.159  Sum_probs=71.9

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCCCCCCccCcCCCCceEEecCcccccCCC---------CCCCCC
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH---------LPFPSS   73 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~---------~~~~~~   73 (303)
                      +.+++++|||||++|+.+|..|++++.  +|+++++++...       |.+..+  ++.+.....         ..+...
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~p-------y~r~~L--s~~~~~~~~~~~~~~~~~~~~~~~   72 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP-------YMRPPL--SKELWFSDDPNVTKTLRFKQWNGK   72 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC-------BCSGGG--GTGGGCC--CTHHHHCEEECTTSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCC-------cccccc--ceecccccCchhhhhhhhhhcccc
Confidence            456789999999999999999999876  599999876542       221100  000000000         000000


Q ss_pred             -CC-CCCCHH-HHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090           74 -YP-MFVSRA-QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN  150 (303)
Q Consensus        74 -~~-~~~~~~-~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~  150 (303)
                       .. .+.+.+ ..........++.++  .++++++|++|+.++    .+|++.++       ++ +.||.||+|||  +.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~gI--~~~~g~~V~~id~~~----~~V~l~dG-------~~-i~~d~lViAtG--~~  136 (213)
T d1m6ia1          73 ERSIYFQPPSFYVSAQDLPHIENGGV--AVLTGKKVVQLDVRD----NMVKLNDG-------SQ-ITYEKCLIATG--GT  136 (213)
T ss_dssp             EEESBSSCGGGSBCTTTTTTSTTCEE--EEEETCCEEEEEGGG----TEEEETTS-------CE-EEEEEEEECCC--EE
T ss_pred             hhhhhcCChhhhhhhhhHHHHHHCCe--EEEeCCEEEEeeccC----ceeeeccc-------ee-eccceEEEeee--ee
Confidence             00 000000 000000112233444  448999999997665    36777765       57 89999999999  55


Q ss_pred             CCCCCCC
Q 022090          151 PFTPDIR  157 (303)
Q Consensus       151 p~~p~~~  157 (303)
                      |..+.++
T Consensus       137 ~~~~~l~  143 (213)
T d1m6ia1         137 EPNVELA  143 (213)
T ss_dssp             EECCTTH
T ss_pred             cchhhhh
Confidence            5544443

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.96  E-value=1.1e-10  Score=83.44  Aligned_cols=68  Identities=24%  Similarity=0.267  Sum_probs=54.1

Q ss_pred             CccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHHhhC
Q 022090          169 TGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYV  238 (303)
Q Consensus       169 ~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~~~l  238 (303)
                      .++++.+.+... ....|++++|||+|++|+|+|..|+++|.+||+++|.+ +++|..+.+++..+.+.|
T Consensus         5 g~~~~~s~~~l~-~~~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~-~il~~~d~~~~~~l~~~l   72 (115)
T d1lvla2           5 GGPVISSTEALA-PKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE-RILPTYDSELTAPVAESL   72 (115)
T ss_dssp             BTTEECHHHHTC-CSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTTSCHHHHHHHHHHH
T ss_pred             CCcEECChHHhC-cccCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeec-cccccccchhHHHHHHHH
Confidence            345666666655 34457999999999999999999999999999999999 888887776665554433

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.94  E-value=3.5e-10  Score=88.97  Aligned_cols=110  Identities=12%  Similarity=0.089  Sum_probs=67.0

Q ss_pred             cEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            9 EVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      +|+|||||++|+.+|..|++.+  .+|+++|+++.+.       |....+  +..+   ..        .....+.+..+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~-------~~~~~~--~~~l---~~--------~~~~~~~~~~~   61 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS-------FLSAGM--QLYL---EG--------KVKDVNSVRYM   61 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS-------BCGGGH--HHHH---TT--------SSCCGGGSBSC
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc-------ccccCc--chhh---cc--------cccchHHHHHh
Confidence            7999999999999999999874  5799999987542       110000  0000   00        00011112222


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE  147 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~  147 (303)
                      ..+..+..+++.  +++++|++++.++  +.  |+..+..++  ++.+ +.+|.+|+|+|.
T Consensus        62 ~~~~l~~~gi~v--~~~~~V~~i~~~~--~~--v~~~~~~~g--~~~~-~~~D~li~a~G~  113 (198)
T d1nhpa1          62 TGEKMESRGVNV--FSNTEITAIQPKE--HQ--VTVKDLVSG--EERV-ENYDKLIISPGA  113 (198)
T ss_dssp             CHHHHHHTTCEE--EETEEEEEEETTT--TE--EEEEETTTC--CEEE-EECSEEEECCCE
T ss_pred             hHHHHHHCCcEE--EEeeceeeEeecc--cc--ceeeecccc--cccc-cccceeeEeecc
Confidence            233445567655  8999999998655  33  444333222  3367 899999999993

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.93  E-value=2.4e-10  Score=91.47  Aligned_cols=40  Identities=20%  Similarity=0.390  Sum_probs=36.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      .++|++|||||++|+++|..+++.|.+|+|+|++. +||.+
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~-~GG~c   43 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA-LGGTC   43 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC-TTHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-CCCcc
Confidence            46899999999999999999999999999999975 66654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.93  E-value=2.7e-10  Score=81.86  Aligned_cols=64  Identities=17%  Similarity=0.109  Sum_probs=53.3

Q ss_pred             cEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHHh
Q 022090          171 EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFK  236 (303)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~~  236 (303)
                      .++++.+..+ ....|++++|||+|++|+|+|..++++|.+||+++|++ .++|..+.+++..+++
T Consensus         8 ~v~~s~~~l~-l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~-~ll~~~d~ei~~~l~~   71 (119)
T d3lada2           8 VIVDSTGALD-FQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD-KFLPAVDEQVAKEAQK   71 (119)
T ss_dssp             SEEEHHHHTS-CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTSCHHHHHHHHH
T ss_pred             EEEchhHhhC-cccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeec-ccCCcccchhHHHHHH
Confidence            3566666655 44568999999999999999999999999999999999 7889887777766554

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.3e-09  Score=92.59  Aligned_cols=42  Identities=29%  Similarity=0.351  Sum_probs=38.7

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      ....+|+|||||++||+||..|+++|++|+|+|+++.+||..
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~   44 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV   44 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccE
Confidence            356789999999999999999999999999999999999953

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.90  E-value=6.5e-10  Score=91.10  Aligned_cols=41  Identities=39%  Similarity=0.490  Sum_probs=37.6

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCCCCCccCc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKK   48 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~   48 (303)
                      +||+|||||++||+||..|+++|+ +|+|+|+++.+||.+..
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t   42 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK   42 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCE
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEE
Confidence            489999999999999999999997 79999999999996654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.90  E-value=7.3e-10  Score=92.67  Aligned_cols=40  Identities=30%  Similarity=0.434  Sum_probs=37.7

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~   47 (303)
                      ++|+|||||++||+||..|+++|++|+|+|+++.+||..+
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~   41 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLR   41 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceE
Confidence            6899999999999999999999999999999999999554

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.90  E-value=5.1e-11  Score=86.21  Aligned_cols=64  Identities=20%  Similarity=0.321  Sum_probs=47.4

Q ss_pred             CCCCCCCCCccccccCCCCCccEEecccCCCC-----CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeee
Q 022090          150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (303)
Q Consensus       150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp  224 (303)
                      +|+.|++||.+..          ++...+.+.     ....+++++|||+|++|+|+|..|+++|.+||+++|++ ++++
T Consensus         1 R~r~p~ipG~e~~----------~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~-~l~~   69 (122)
T d1xhca2           1 RAREPQIKGKEYL----------LTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA-MFLG   69 (122)
T ss_dssp             EECCCCSBTGGGE----------ECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS-CCTT
T ss_pred             CCCCcCCCCccce----------EccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccc-cccC
Confidence            3678899997532          333322211     11135899999999999999999999999999999998 5554

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=5.9e-10  Score=93.40  Aligned_cols=42  Identities=21%  Similarity=0.219  Sum_probs=39.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~   48 (303)
                      ++||+|||||++||++|..|++.|.+|+|+|+++++||....
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t   42 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT   42 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEE
Confidence            379999999999999999999999999999999999997654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.84  E-value=7.6e-10  Score=83.55  Aligned_cols=80  Identities=20%  Similarity=0.141  Sum_probs=59.5

Q ss_pred             ccCCCCCCCCC-CCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEE--CCCccHHHHHHHHhhccCceEEEeecCe
Q 022090          144 ASGETTNPFTP-DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVV--GSGNSGMEIALDLANHAAKTSLVVRSPV  220 (303)
Q Consensus       144 AtG~~~~p~~p-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~Vi--G~G~~g~e~a~~l~~~g~~vt~~~r~~~  220 (303)
                      |||  +.|..| ++||.+.-      ...++.+.+........++.++|+  |+|++|+|+|..|+++|.+||++++.+ 
T Consensus         4 atG--~~~~~~~pipG~~~~------~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~-   74 (156)
T d1djqa2           4 TDG--TNCLTHDPIPGADAS------LPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-   74 (156)
T ss_dssp             SSC--CCTTTSSCCTTCCTT------STTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-
T ss_pred             CCC--CCCCCCCCCCCccCC------CCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC-
Confidence            789  777776 79998752      224666666655444445666666  999999999999999999999999988 


Q ss_pred             eeeehhhHHHHH
Q 022090          221 HVLSREMVYLGV  232 (303)
Q Consensus       221 ~~lp~~~~~~~~  232 (303)
                      ++++..+.....
T Consensus        75 ~~~~~~~~~~~~   86 (156)
T d1djqa2          75 LANYMHFTLEYP   86 (156)
T ss_dssp             TTTHHHHTTCHH
T ss_pred             ccccccchhHHH
Confidence            677665544433

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=6.6e-09  Score=87.09  Aligned_cols=39  Identities=23%  Similarity=0.428  Sum_probs=34.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      ..+||+|||+|+|||++|..+++.| +|+|+||.+..||.
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~   44 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGS   44 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC--
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCc
Confidence            3589999999999999999999888 99999999877663

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=7.1e-10  Score=89.15  Aligned_cols=42  Identities=14%  Similarity=0.251  Sum_probs=39.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~   47 (303)
                      ++|||+||||||+|++||..|++.|.+|+|||+.+.+||.|.
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~   45 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL   45 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeE
Confidence            469999999999999999999999999999999999998764

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.81  E-value=7.1e-10  Score=79.93  Aligned_cols=61  Identities=26%  Similarity=0.213  Sum_probs=47.1

Q ss_pred             EecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHHh
Q 022090          173 IHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFK  236 (303)
Q Consensus       173 ~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~~  236 (303)
                      +++.++.+ ....|++++|||+|++|+|+|..++++|.+||+++|+  .+||.++.+++..+.+
T Consensus         8 ~tsd~~~~-l~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~--~~l~~~D~~~~~~l~~   68 (122)
T d1h6va2           8 ISSDDLFS-LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS--ILLRGFDQDMANKIGE   68 (122)
T ss_dssp             BCHHHHTT-CSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--SSSTTSCHHHHHHHHH
T ss_pred             EcchHHhC-cccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec--hhhccCCHHHHHHHHH
Confidence            34444443 4456899999999999999999999999999999875  4778777666655444

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.80  E-value=8.5e-10  Score=79.38  Aligned_cols=40  Identities=33%  Similarity=0.527  Sum_probs=36.9

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~  225 (303)
                      .+++++|||+|++|+|+|..|+++|.+||++++++ ++||+
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~~l~~   68 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP-RLMSR   68 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-STTTT
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeecc-ccccc
Confidence            46899999999999999999999999999999999 67664

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.79  E-value=3.5e-08  Score=85.11  Aligned_cols=111  Identities=18%  Similarity=0.275  Sum_probs=68.5

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhh------CCCCeEEEecCCCCCC------ccCc-------------CCC----
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSL------QSIPYVILERENCYAS------IWKK-------------YSY----   51 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~------~g~~v~iie~~~~~gg------~w~~-------------~~~----   51 (303)
                      |......+||+||||||||++||..|++      .|++|+|+||...+|.      ....             ...    
T Consensus        26 m~~~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~  105 (380)
T d2gmha1          26 MERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTP  105 (380)
T ss_dssp             CCCCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEE
T ss_pred             cccccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccc
Confidence            3333346899999999999999999997      7999999999887653      2110             000    


Q ss_pred             ---CceEEecCcccccCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeC
Q 022090           52 ---DRLRLHLAKQFCQLPHLP---FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDE  113 (303)
Q Consensus        52 ---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~  113 (303)
                         .................+   ..........+..+..++...++..+...  .....+..+...+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~--~~~~~~~~~l~~~  171 (380)
T d2gmha1         106 VTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEV--YPGYAAAEILFHE  171 (380)
T ss_dssp             CCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEE--ETTCCEEEEEECT
T ss_pred             eecceEEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhcccee--eeecceeeeeecc
Confidence               011111111111111111   11111223467889999999999888665  7777777777655

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.78  E-value=2.4e-09  Score=90.22  Aligned_cols=41  Identities=20%  Similarity=0.267  Sum_probs=38.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK   47 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~   47 (303)
                      .++|+|||||++||++|..|+++|++|+|+|+++++||.+.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~   42 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSY   42 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGC
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeee
Confidence            47899999999999999999999999999999999999753

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.78  E-value=2.9e-08  Score=84.69  Aligned_cols=38  Identities=18%  Similarity=0.356  Sum_probs=33.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhh----CCCCeEEEecCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSL----QSIPYVILERENCYAS   44 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~----~g~~v~iie~~~~~gg   44 (303)
                      .+||+|||+|++||+||..|++    .|.+|+|+||....|+
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg   62 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS   62 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTC
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCC
Confidence            4799999999999999999875    6999999999876654

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=9.5e-10  Score=79.65  Aligned_cols=61  Identities=30%  Similarity=0.469  Sum_probs=56.6

Q ss_pred             CCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          153 TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       153 ~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..++||.+.|      .|+-+|++..++...+++++|+|||+|.+|+|.|..|++.+.+||+++|++
T Consensus         3 ~L~ipge~~~------~gkGV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2           3 NMNVPGEDQY------RTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             CCCCTTTTTT------BTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred             cCCCCCHHHh------cCCCEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccc
Confidence            4678999999      888899988888888999999999999999999999999999999999998

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=1.1e-08  Score=82.33  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=32.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .|||+||||||+|++||..+++.|.+|+|+|+.+.
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~   37 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP   37 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            58999999999999999999999999999998764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.75  E-value=2.6e-09  Score=76.34  Aligned_cols=54  Identities=26%  Similarity=0.190  Sum_probs=43.7

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHHhhccC---ceEEEeecCeeeeehhhHHHHHHHHh
Q 022090          182 KPYGGKNVLVVGSGNSGMEIALDLANHAA---KTSLVVRSPVHVLSREMVYLGVVLFK  236 (303)
Q Consensus       182 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~---~vt~~~r~~~~~lp~~~~~~~~~~~~  236 (303)
                      ....+++++|||+|++|+|+|..+.+++.   +||+++|++ ++||.++..++..+.+
T Consensus        16 l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~-~iL~~~d~~~~~~l~~   72 (117)
T d1aoga2          16 LPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE-MILRGFDHTLREELTK   72 (117)
T ss_dssp             CSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS-SSSTTSCHHHHHHHHH
T ss_pred             chhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc-hhhcccchHHHHHHHH
Confidence            34457999999999999999998887754   699999999 7888877666655544

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.73  E-value=3.4e-10  Score=87.36  Aligned_cols=36  Identities=31%  Similarity=0.550  Sum_probs=31.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCY   42 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~~~   42 (303)
                      .++|+|||||++|+.+|..|++++.  +|+++|+++..
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~   39 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY   39 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence            3699999999999999999999874  78999998753

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=6.2e-10  Score=88.89  Aligned_cols=37  Identities=19%  Similarity=0.367  Sum_probs=34.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      .|||+||||||+|+++|..+++.|.+|+|+|+.. .||
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~-~GG   39 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK-LGG   39 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-CCC
Confidence            4899999999999999999999999999999976 444

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.70  E-value=5.8e-10  Score=86.49  Aligned_cols=108  Identities=17%  Similarity=0.103  Sum_probs=61.9

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHHH
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL   87 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   87 (303)
                      .+|+|||||++|+.+|..|++.|.++.+++..+.....+..   +.+    +..+...            .....   ..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~---~~l----~~~~~~~------------~~~~~---~~   61 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDR---PPL----SKDFMAH------------GDAEK---IR   61 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCS---GGG----GTTHHHH------------CCGGG---SB
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhh---HHH----hhhhhhh------------hhhhh---HH
Confidence            46999999999999999999999887777655432211110   000    0000000            00000   00


Q ss_pred             HHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090           88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT  153 (303)
Q Consensus        88 ~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~  153 (303)
                      .....  .....++++.++++++.+.    ..+.+.++       ++ +.||.||+|+|  ..|+.
T Consensus        62 ~~~~~--~~~i~~~~~~~v~~i~~~~----~~~~~~~g-------~~-~~~D~vi~a~G--~~p~~  111 (183)
T d1d7ya1          62 LDCKR--APEVEWLLGVTAQSFDPQA----HTVALSDG-------RT-LPYGTLVLATG--AAPRA  111 (183)
T ss_dssp             CCGGG--STTCEEEETCCEEEEETTT----TEEEETTS-------CE-EECSEEEECCC--EEECC
T ss_pred             HHHhh--cCCeEEEEecccccccccc----ceeEecCC-------cE-eeeeeEEEEEE--EEccc
Confidence            00011  2223447888888876544    45666654       57 89999999999  55543

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=9e-10  Score=79.80  Aligned_cols=59  Identities=29%  Similarity=0.428  Sum_probs=54.2

Q ss_pred             CCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          155 DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       155 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ++||.+.|      .|.-+|++..++...+++++|+|||+|.+|+|.|..|++.+.+||+++|++
T Consensus         2 ~ipge~~~------~gkgV~yca~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2           2 GLPSEEAF------KGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             CCHHHHHT------BTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             cCCCHHHh------cCCCEEEEEecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            46788888      888889888888788899999999999999999999999999999999998

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.69  E-value=8.4e-09  Score=82.28  Aligned_cols=40  Identities=20%  Similarity=0.307  Sum_probs=35.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      ++|||+||||||||++||..|++.|.+|+|||+....++.
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~   41 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGK   41 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCcc
Confidence            5799999999999999999999999999999987655443

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.66  E-value=1.4e-08  Score=82.50  Aligned_cols=39  Identities=26%  Similarity=0.353  Sum_probs=34.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS   44 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg   44 (303)
                      ..+||+|||||++||++|..|+++|++|+|+||+...++
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~   43 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            457999999999999999999999999999999865444

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.66  E-value=8.3e-09  Score=82.72  Aligned_cols=41  Identities=22%  Similarity=0.408  Sum_probs=37.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW   46 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w   46 (303)
                      ..|||+||||||+||++|..|++.|.+|+|||+...+||.+
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~   45 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVC   45 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHH
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCee
Confidence            35899999999999999999999999999999999888853

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.65  E-value=3.6e-09  Score=76.12  Aligned_cols=50  Identities=18%  Similarity=0.195  Sum_probs=42.3

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHH
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVL  234 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~  234 (303)
                      ..+++++|||+|++|+|+|..|+++|.+|++++|++ +++|..+..++..+
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~-~~l~~~d~~~~~~~   69 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE-PLKLIKDNETRAYV   69 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC-TTTTCCSHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc-hhhcccccchhhhh
Confidence            457999999999999999999999999999999998 66676665554443

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.62  E-value=8e-09  Score=83.11  Aligned_cols=38  Identities=11%  Similarity=0.319  Sum_probs=31.8

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCC---CCeEEEecCCCCCCcc
Q 022090            8 VEVIMVGAGTSGLATAACLSLQS---IPYVILERENCYASIW   46 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g---~~v~iie~~~~~gg~w   46 (303)
                      .+|+||||||+|++||..+++.+   .+|+++|+.. +||.|
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~-~GG~c   42 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAA   42 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC-CCcee
Confidence            48999999999999999887765   5799999865 67754

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.58  E-value=1.3e-08  Score=72.66  Aligned_cols=61  Identities=21%  Similarity=0.112  Sum_probs=46.0

Q ss_pred             ecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhc---cCceEEEeecCeeeeehhhHHHHHHHHh
Q 022090          174 HSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH---AAKTSLVVRSPVHVLSREMVYLGVVLFK  236 (303)
Q Consensus       174 ~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~---g~~vt~~~r~~~~~lp~~~~~~~~~~~~  236 (303)
                      .+.+..+ ....+++++|||+|++|+|+|..++++   |.+||+++|++ +++|..+.+++..+.+
T Consensus         7 ts~~~~~-l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~-~il~~~d~~~~~~~~~   70 (117)
T d1feca2           7 TSNEAFY-LDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD-MILRGFDSELRKQLTE   70 (117)
T ss_dssp             CHHHHTT-CSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS-SSSTTSCHHHHHHHHH
T ss_pred             chHHhhC-ccccCCeEEEECCChHHHHHHHHhHhhcccccccceecccc-cccccccchhhHHHHH
Confidence            3343333 334579999999999999999887765   78999999999 7888776666555443

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.56  E-value=1.9e-07  Score=79.95  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=31.2

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .||+|||+|++|+.+|.+|+++|++|+|+|+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            489999999999999999999999999999964

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.55  E-value=1.1e-07  Score=81.62  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=32.7

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~   39 (303)
                      -.++||+|||+|++|+.+|.+|+++|++|+|+|+.
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            35689999999999999999999999999999985

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.55  E-value=2.6e-08  Score=71.61  Aligned_cols=40  Identities=30%  Similarity=0.358  Sum_probs=36.9

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR  225 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~  225 (303)
                      .+++++|||+|++|+|+|..|+++|.+||++++.+ +++|+
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~-~~l~~   68 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD-RPLGV   68 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-STTTT
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecC-ccccc
Confidence            46899999999999999999999999999999998 66665

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.54  E-value=1.5e-08  Score=73.43  Aligned_cols=51  Identities=25%  Similarity=0.304  Sum_probs=46.7

Q ss_pred             CccEEecccCCCC--CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          169 TGEVIHSTQYKNG--KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       169 ~g~~~~~~~~~~~--~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .|+-++++..++.  ..+++|+|+|||+|.+|+|.|..|++...+||+++|++
T Consensus        15 ~gkGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   67 (130)
T d1vdca2          15 WNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD   67 (130)
T ss_dssp             BTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             cCCcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecc
Confidence            7777888888774  47899999999999999999999999999999999998

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.44  E-value=6.8e-08  Score=74.31  Aligned_cols=36  Identities=22%  Similarity=0.211  Sum_probs=32.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~   42 (303)
                      ..+|+|||||++|+.+|..|+++|.++++++..+..
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            358999999999999999999999999888877653

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.44  E-value=2.7e-08  Score=72.61  Aligned_cols=41  Identities=24%  Similarity=0.438  Sum_probs=37.6

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehh
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE  226 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~  226 (303)
                      .+++++|||+|++|+|+|..|++.|.+||++++++ ++||+.
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~-~~l~~~   74 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA-RVLERV   74 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-STTTTT
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc-cccccc
Confidence            47899999999999999999999999999999999 677654

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.43  E-value=6.3e-08  Score=76.80  Aligned_cols=38  Identities=26%  Similarity=0.392  Sum_probs=34.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI   45 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~   45 (303)
                      .+||+||||||+|+++|..+++.|.+|+|+|+... ||.
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~-GG~   40 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL-GGV   40 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT-THH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCC-Ccc
Confidence            48999999999999999999999999999999874 554

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=1.3e-07  Score=79.26  Aligned_cols=42  Identities=29%  Similarity=0.324  Sum_probs=37.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCc
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKK   48 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~   48 (303)
                      .+||+||||||+||+||..|+++  |++|+|+|+++.+||.+..
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            47999999999999999999965  9999999999999987654

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=4.7e-08  Score=73.80  Aligned_cols=56  Identities=29%  Similarity=0.422  Sum_probs=47.5

Q ss_pred             CCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEE
Q 022090          151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSL  214 (303)
Q Consensus       151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~  214 (303)
                      |+.|++||.+.        ..++++.++.......+++|+|||+|++|+|+|..+++.|.+++.
T Consensus         2 Pr~p~IpG~d~--------~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~   57 (162)
T d1ps9a2           2 PRTPPIDGIDH--------PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQ   57 (162)
T ss_dssp             ECCCCCBTTTS--------TTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGG
T ss_pred             CCCCCCCCCCC--------CCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccce
Confidence            78899999874        357888888776777899999999999999999999999976543

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.34  E-value=1.1e-06  Score=65.52  Aligned_cols=71  Identities=7%  Similarity=-0.028  Sum_probs=51.3

Q ss_pred             CCcEEEE--CCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090            7 GVEVIMV--GAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI   84 (303)
Q Consensus         7 ~~~vvII--GaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   84 (303)
                      ...++|+  |||+.|+.+|..|+++|.+|+++++.+.++...                                 .....
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~---------------------------------~~~~~   85 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMH---------------------------------FTLEY   85 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHH---------------------------------HTTCH
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccccc---------------------------------chhHH
Confidence            3456665  999999999999999999999999987543110                                 00123


Q ss_pred             HHHHHHHHHcCCCceeEeCeEEEEEEEe
Q 022090           85 EHLDHYVSHFNIGPSIRYQRSVESASYD  112 (303)
Q Consensus        85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~  112 (303)
                      ..+.+..++.++..  ++++.+.+++..
T Consensus        86 ~~~~~~l~~~GV~i--~~~~~v~~i~~~  111 (156)
T d1djqa2          86 PNMMRRLHELHVEE--LGDHFCSRIEPG  111 (156)
T ss_dssp             HHHHHHHHHTTCEE--EETEEEEEEETT
T ss_pred             HHHHHHHhhccceE--EeccEEEEecCc
Confidence            44555566677666  999999998643

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=1.5e-06  Score=65.19  Aligned_cols=28  Identities=32%  Similarity=0.445  Sum_probs=25.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCe
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPY   33 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v   33 (303)
                      ..++|+|||||..|+-+|..|.+.|.++
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             cCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            3579999999999999999999999764

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.29  E-value=1.5e-07  Score=79.89  Aligned_cols=37  Identities=30%  Similarity=0.500  Sum_probs=32.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHh-----hCCCCeEEEecCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLS-----LQSIPYVILERENCY   42 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~-----~~g~~v~iie~~~~~   42 (303)
                      ..|||+|||||++|+++|..|+     +.|++|+|||+.+..
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            4589999999999999999996     569999999998644

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.22  E-value=4e-07  Score=77.74  Aligned_cols=37  Identities=19%  Similarity=0.225  Sum_probs=33.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY   42 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~   42 (303)
                      ..|||+|||+|++|+.+|.+|++.|++|+|+|+....
T Consensus         3 ~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           3 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            3589999999999999999999999999999986543

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.20  E-value=4e-07  Score=73.10  Aligned_cols=36  Identities=14%  Similarity=0.321  Sum_probs=32.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~   41 (303)
                      +.|||+|||+||||+++|..+++.|. +|+|+|+...
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            46999999999999999999999985 6999998764

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.15  E-value=1.1e-06  Score=69.98  Aligned_cols=35  Identities=17%  Similarity=0.291  Sum_probs=31.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      +.|||+||||||+|+++|..+++.|. +|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            46999999999999999999999876 688888753

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=3e-05  Score=55.23  Aligned_cols=100  Identities=22%  Similarity=0.283  Sum_probs=70.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .++|+|||+|-+++..|..|.+...+|+++-|.+.+-                                   ..+.+.+.
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~-----------------------------------~~~~~~~~   71 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKR   71 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC-----------------------------------CCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc-----------------------------------chhHHHHH
Confidence            5799999999999999999999999999998876421                                   11245555


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG  146 (303)
                      +.+..+.-++.  +++++++.++.-++ .+.-.|++.+..++. +.++ +.+|.|+++.|
T Consensus        72 ~~~~~~~~~i~--~~~~~~v~~i~G~~-~~v~~v~l~~~~~~e-~~~~-l~~dgvFv~iG  126 (126)
T d1trba2          72 LMDKVENGNII--LHTNRTLEEVTGDQ-MGVTGVRLRDTQNSD-NIES-LDVAGLFVAIG  126 (126)
T ss_dssp             HHHHHHTSSEE--EECSCEEEEEEECS-SSEEEEEEECCTTCC-CCEE-EECSEEEECSC
T ss_pred             HHHhhccccee--EecceEEEEEECCC-CceEEEEEEECCCCc-eEEE-EECCEEEEEeC
Confidence            65555544443  48899999998764 223346666543321 2257 89999999877

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=5e-05  Score=54.05  Aligned_cols=96  Identities=18%  Similarity=0.189  Sum_probs=67.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .++|+|||+|-+.+-.|..|++...+|+++-+.+.+..                                   .    +.
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~-----------------------------------~----~~   70 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA-----------------------------------D----QV   70 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS-----------------------------------C----HH
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc-----------------------------------c----cc
Confidence            47999999999999999999999889999987764210                                   0    12


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG  146 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG  146 (303)
                      +.+.+...+ ...+++++++.++.-++ ...-.+.+.+..++  +..+ +.+|.|+++-|
T Consensus        71 ~~~~~~~~~-~I~v~~~~~v~~i~G~~-~~v~~v~l~~~~tg--e~~~-l~vdgvFv~IG  125 (126)
T d1fl2a2          71 LQDKLRSLK-NVDIILNAQTTEVKGDG-SKVVGLEYRDRVSG--DIHN-IELAGIFVQIG  125 (126)
T ss_dssp             HHHHHHTCT-TEEEESSEEEEEEEESS-SSEEEEEEEETTTC--CEEE-EECSEEEECSC
T ss_pred             ccccccccc-ceeEEcCcceEEEEccc-cceeeEEEEECCCC--CEEE-EECCEEEEEeC
Confidence            222333322 24458999999998754 23334666664443  5577 99999999987

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.01  E-value=4e-06  Score=62.15  Aligned_cols=39  Identities=26%  Similarity=0.342  Sum_probs=33.6

Q ss_pred             CCCCCCCeEEEECCCccHHHHHHHHhhccCc-eEEEeecC
Q 022090          181 GKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSP  219 (303)
Q Consensus       181 ~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-vt~~~r~~  219 (303)
                      +....+++|+|||||++|+|+|..+.++|++ |++++|++
T Consensus        40 ~~p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          40 PLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             ccccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            3445578999999999999999999999755 89999987

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.5e-06  Score=63.35  Aligned_cols=40  Identities=18%  Similarity=0.279  Sum_probs=34.5

Q ss_pred             CCCeEEEECCCccHHHHHHHHhh----ccCceEEEeecCeeeeeh
Q 022090          185 GGKNVLVVGSGNSGMEIALDLAN----HAAKTSLVVRSPVHVLSR  225 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~----~g~~vt~~~r~~~~~lp~  225 (303)
                      .+++++|||+|++|+|+|..|++    .|.+||++++.+ ++|++
T Consensus        36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~-~~l~~   79 (137)
T d1m6ia2          36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK-GNMGK   79 (137)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS-STTTT
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc-cCCcc
Confidence            36899999999999999999964    588999999998 66554

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.97  E-value=0.00012  Score=53.83  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=29.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCC-eEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~~   40 (303)
                      ..+|+|||||-+|+-+|..|.++|.+ |+++.+.+
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            46899999999999999999999875 78887765

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=6.3e-06  Score=62.62  Aligned_cols=38  Identities=26%  Similarity=0.424  Sum_probs=35.3

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       182 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ....+|+|+|||+|++|+++|..|+++|++|+++++.+
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            44568999999999999999999999999999999987

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.89  E-value=4.1e-06  Score=71.28  Aligned_cols=34  Identities=35%  Similarity=0.494  Sum_probs=32.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .||++|||+|.+|+.+|.+|++.|.+|+|+|+..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            5899999999999999999999999999999874

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.82  E-value=0.0004  Score=49.36  Aligned_cols=95  Identities=16%  Similarity=0.229  Sum_probs=65.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH   86 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   86 (303)
                      .++|+|||+|-+.+-.|..|++.-.+|+++-|.+.+..                                   .    +.
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra-----------------------------------~----~~   74 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA-----------------------------------S----KI   74 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS-----------------------------------C----HH
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc-----------------------------------c----hh
Confidence            57999999999999999999999999999988775310                                   0    11


Q ss_pred             HHHHHHHcCCCceeEeCeEEEEEEEeCCCC-eEEEEEeecCCCCceeEEEEeeCEEEEc
Q 022090           87 LDHYVSHFNIGPSIRYQRSVESASYDEATN-MWNVKASNLLSPGREIEEYYSGRFLVVA  144 (303)
Q Consensus        87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~~~ad~vIlA  144 (303)
                      +.+.+...+ +..+++++++..+.-+...+ .-.+...+..++  +..+ +.+|.|++|
T Consensus        75 ~~~~l~~~~-nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tg--e~~~-l~~dGvFVa  129 (130)
T d1vdca2          75 MQQRALSNP-KIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTG--DVSD-LKVSGLFFA  129 (130)
T ss_dssp             HHHHHHTCT-TEEEECSEEEEEEEESSSSSSEEEEEEEETTTC--CEEE-EECSEEEEC
T ss_pred             hhhccccCC-ceEEEeccEEEEEEccCCcccEEEEEEEECCCC--CEEE-EECCEEEEE
Confidence            222222222 24558999999998765222 234555554443  4577 899999987

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.80  E-value=6e-06  Score=63.56  Aligned_cols=38  Identities=16%  Similarity=0.171  Sum_probs=34.0

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecCeeee
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVL  223 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~~~~l  223 (303)
                      .++||+|||+|++|+++|..|+++|. +|++++|++ .+.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~-~~g   41 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQE-YVG   41 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS-SCS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC-ccc
Confidence            46899999999999999999999997 599999998 443

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.74  E-value=2.3e-06  Score=68.25  Aligned_cols=30  Identities=30%  Similarity=0.482  Sum_probs=26.4

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEec
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILER   38 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~   38 (303)
                      +|+|||||++||++|..|+++|++|+++|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            699999999999999999999987655554

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.70  E-value=1.4e-05  Score=68.79  Aligned_cols=34  Identities=29%  Similarity=0.484  Sum_probs=31.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC-CCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~   40 (303)
                      .||++|||||.+|+.+|.+|++.+ .+|+|+|+..
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            489999999999999999999997 7999999985

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.69  E-value=1.3e-05  Score=60.87  Aligned_cols=40  Identities=25%  Similarity=0.473  Sum_probs=34.4

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeee
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp  224 (303)
                      ++++|+|||+|++|+|+|..|.++|.+|+++.+.+....+
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~   41 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIP   41 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccc
Confidence            4689999999999999999999999999998888743333

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.67  E-value=2.2e-05  Score=61.66  Aligned_cols=46  Identities=20%  Similarity=0.280  Sum_probs=35.8

Q ss_pred             CCCCCeEEEECCCccHHHHHHHHh--------------------hcc-CceEEEeecCeeeeehhhH
Q 022090          183 PYGGKNVLVVGSGNSGMEIALDLA--------------------NHA-AKTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       183 ~~~~~~v~ViG~G~~g~e~a~~l~--------------------~~g-~~vt~~~r~~~~~lp~~~~  228 (303)
                      ...+++|+|||+|++|+|+|+.+.                    +.+ .+|+++.|++..-++....
T Consensus        36 ~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~~~ft~~  102 (216)
T d1lqta1          36 DLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTL  102 (216)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHH
T ss_pred             cccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHhCCCChh
Confidence            356899999999999999999887                    344 4699999998555554333

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.64  E-value=1.8e-05  Score=67.88  Aligned_cols=34  Identities=35%  Similarity=0.579  Sum_probs=31.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCC-CCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~   40 (303)
                      .||++|||||.+|+.+|.+|++.+ ++|+|+|+..
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            489999999999999999999876 8999999875

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=4.1e-05  Score=51.35  Aligned_cols=35  Identities=17%  Similarity=0.431  Sum_probs=32.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .++|+|+|.|.+|+++|..|.++|.+|+++|.+..
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            46899999999999999999999999999998653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.61  E-value=2.1e-05  Score=59.42  Aligned_cols=39  Identities=23%  Similarity=0.403  Sum_probs=33.8

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccC--ceEEEeecCeeeee
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAA--KTSLVVRSPVHVLS  224 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~--~vt~~~r~~~~~lp  224 (303)
                      .+|||+|||+|++|+|+|..|.+++.  +||++++.+ +.++
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~-~~~~   41 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT-DYYT   41 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS-CEEC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC-cccc
Confidence            37899999999999999999999885  689999998 4443

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.60  E-value=1.3e-05  Score=67.77  Aligned_cols=33  Identities=39%  Similarity=0.571  Sum_probs=30.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .||++|||+|.+|+.+|.+|++. ++|+|+|+..
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            37999999999999999999986 9999999986

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.41  E-value=4.9e-05  Score=57.35  Aligned_cols=34  Identities=24%  Similarity=0.234  Sum_probs=32.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .++|+|||+|..|..+|..|.+.|++|+|+||+.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            3689999999999999999999999999999986

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.36  E-value=8.1e-05  Score=56.42  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=31.3

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ++|+|||+|..|+++|..|+++|++|.++++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            689999999999999999999999999999865

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.34  E-value=0.00011  Score=57.93  Aligned_cols=46  Identities=15%  Similarity=0.192  Sum_probs=36.4

Q ss_pred             CCCCCeEEEECCCccHHHHHHHHhhc--------------------c-CceEEEeecCeeeeehhhH
Q 022090          183 PYGGKNVLVVGSGNSGMEIALDLANH--------------------A-AKTSLVVRSPVHVLSREMV  228 (303)
Q Consensus       183 ~~~~~~v~ViG~G~~g~e~a~~l~~~--------------------g-~~vt~~~r~~~~~lp~~~~  228 (303)
                      .+.+++|+|||+|++|+|+|+.+.+.                    + .+|+++.|++..-++....
T Consensus        36 ~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~ft~~  102 (225)
T d1cjca1          36 DLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIK  102 (225)
T ss_dssp             CTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHH
T ss_pred             cccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCCCCch
Confidence            35689999999999999999999883                    3 5799999998544444333

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.33  E-value=6e-05  Score=61.66  Aligned_cols=34  Identities=29%  Similarity=0.441  Sum_probs=32.2

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            5899999999999999999999999999999875

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=4e-05  Score=58.63  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=32.2

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ++++|+|||+|++|+++|..+++.|.+|++++|.+
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            35789999999999999999999999999998765

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=97.28  E-value=8.4e-05  Score=61.60  Aligned_cols=37  Identities=27%  Similarity=0.416  Sum_probs=33.9

Q ss_pred             CCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ...+++|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3457899999999999999999999999999999865

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.20  E-value=6.9e-05  Score=56.87  Aligned_cols=34  Identities=18%  Similarity=0.278  Sum_probs=30.9

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecCe
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV  220 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~  220 (303)
                      .+|+|||+|++|+|+|..|.++|.+++++.+++.
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            5699999999999999999999999988888773

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.15  E-value=0.00014  Score=60.23  Aligned_cols=34  Identities=29%  Similarity=0.502  Sum_probs=32.1

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .|+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence            5899999999999999999999999999998876

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.14  E-value=0.00012  Score=54.40  Aligned_cols=32  Identities=28%  Similarity=0.640  Sum_probs=28.8

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .||+|||+|++|+|+|..|++ +.+||+++|.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            389999999999999999976 66999999887

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00025  Score=47.31  Aligned_cols=37  Identities=22%  Similarity=0.363  Sum_probs=34.1

Q ss_pred             CCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++|+|+|+|.|.||..+|..|.+.|.+|+++..++
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence            4678999999999999999999999999999998766

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.12  E-value=0.00019  Score=56.61  Aligned_cols=37  Identities=30%  Similarity=0.337  Sum_probs=34.4

Q ss_pred             CCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ...+++|+|||+|++|+.+|..|+++|.+|+++++++
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            3467999999999999999999999999999999987

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.09  E-value=0.0003  Score=51.91  Aligned_cols=35  Identities=17%  Similarity=0.192  Sum_probs=32.7

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+.+|+|||+|.+|+.++..+...|..|+++|.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            46799999999999999999999999999999865

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.07  E-value=0.00018  Score=57.27  Aligned_cols=34  Identities=35%  Similarity=0.470  Sum_probs=31.7

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++|+|||+|.+|+-+|..|+++|.+|++++|.+
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4789999999999999999999999999999863

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.0003  Score=52.17  Aligned_cols=33  Identities=18%  Similarity=0.111  Sum_probs=31.3

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      +|+|||+|..|...|..|++.|++|++++|.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            799999999999999999999999999998764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.04  E-value=0.00033  Score=52.41  Aligned_cols=36  Identities=17%  Similarity=0.244  Sum_probs=33.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ++.+|+|||+|.+|+.+|..+...|..|+++|.+..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            457999999999999999999999999999998763

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.01  E-value=0.00027  Score=50.51  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=31.2

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      +|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            799999999999999999999999999999763

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.01  E-value=0.00021  Score=57.05  Aligned_cols=35  Identities=31%  Similarity=0.436  Sum_probs=32.7

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..++|+|||+|.+|+-+|..|++.|.+|++++|++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            35799999999999999999999999999999976

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.99  E-value=0.0018  Score=44.20  Aligned_cols=34  Identities=18%  Similarity=0.143  Sum_probs=29.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .++|+|||+|.+|+-+|..|++...+++++-+.+
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            5799999999999999999999888877776544

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.97  E-value=0.00043  Score=49.40  Aligned_cols=33  Identities=12%  Similarity=0.149  Sum_probs=31.2

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ++++|||+|..|..+|..|.+.|++|+++|+++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            479999999999999999999999999999976

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00026  Score=58.59  Aligned_cols=35  Identities=26%  Similarity=0.418  Sum_probs=32.2

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +..+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            35689999999999999999999999999998875

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.89  E-value=0.00024  Score=57.72  Aligned_cols=32  Identities=38%  Similarity=0.537  Sum_probs=30.4

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            69999999999999999999999999999875

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.87  E-value=0.00026  Score=56.35  Aligned_cols=32  Identities=28%  Similarity=0.428  Sum_probs=29.7

Q ss_pred             eEEEECCCccHHHHHHHHhhccC-ceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~  219 (303)
                      +|+|||+|.+|+-+|..|++.|. +|+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            69999999999999999999995 799999875

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.86  E-value=0.00028  Score=53.88  Aligned_cols=34  Identities=24%  Similarity=0.199  Sum_probs=31.3

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++|+|||+|++|+++|..+++.|.+|.++++..
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            4789999999999999999999999999998665

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00049  Score=52.54  Aligned_cols=33  Identities=18%  Similarity=0.341  Sum_probs=31.5

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ++|+|||+|..|...|..++..|++|+++|+++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            589999999999999999999999999999876

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.84  E-value=0.00051  Score=52.12  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=31.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      -++|+|||+|..|...|..++..|++|+++|+++
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3589999999999999999999999999999875

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00033  Score=52.76  Aligned_cols=31  Identities=35%  Similarity=0.519  Sum_probs=29.3

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeec
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~  218 (303)
                      .|+|||+|++|+++|..+++.|.+|++++++
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            5899999999999999999999999999875

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.00031  Score=55.29  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=31.1

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -.|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         6 yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           6 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            359999999999999999999999999999986

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.00048  Score=50.32  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=32.2

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhccCceEEEeec
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~  218 (303)
                      .++++++|||||.+|.+-+..|.+.|.+||++...
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            56899999999999999999999999999999543

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.76  E-value=0.00031  Score=55.21  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=31.5

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccC-------ceEEEeecC
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAA-------KTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~-------~vt~~~r~~  219 (303)
                      ++.+|+|||+|++|+.+|..|+++|+       +||++++.+
T Consensus         1 rp~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           1 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CCcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            35699999999999999999999984       799999987

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.75  E-value=0.00045  Score=52.84  Aligned_cols=32  Identities=25%  Similarity=0.375  Sum_probs=28.7

Q ss_pred             eEEEECCCccHHHHHHHHhhccC--ceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAA--KTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~--~vt~~~r~~  219 (303)
                      +|+|||+|++|+|+|..|.+++.  +|++++|.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            69999999999999999999854  689998876

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.75  E-value=0.0012  Score=48.04  Aligned_cols=36  Identities=31%  Similarity=0.430  Sum_probs=32.8

Q ss_pred             CCCCcEEEEC-CcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            5 AAGVEVIMVG-AGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         5 ~~~~~vvIIG-aG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +..++|+||| .|..|.+.|..|.++|++|.++|++.
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            3457999999 69999999999999999999999875

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00042  Score=56.82  Aligned_cols=32  Identities=25%  Similarity=0.340  Sum_probs=30.0

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            68999999999999999999999999998865

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.66  E-value=0.0011  Score=57.51  Aligned_cols=44  Identities=20%  Similarity=0.380  Sum_probs=41.6

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK   48 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~   48 (303)
                      +..+||+|+|.|..=..+|..|++.|.+|+=+|+++..||.|..
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aS   47 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS   47 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccc
Confidence            45799999999999999999999999999999999999999875

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.64  E-value=0.00062  Score=52.35  Aligned_cols=32  Identities=22%  Similarity=0.398  Sum_probs=30.4

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +|.|||.|..|+.+|..|+++|++|+.+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            69999999999999999999999999999865

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.56  E-value=0.0011  Score=49.40  Aligned_cols=34  Identities=26%  Similarity=0.295  Sum_probs=32.3

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .|+|+|||+|.+|.-+|..|.+.|.+|+++.|+.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            5899999999999999999999999999999886

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.56  E-value=0.0011  Score=48.07  Aligned_cols=36  Identities=28%  Similarity=0.469  Sum_probs=31.7

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCC
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~   40 (303)
                      +.+.+|+|||+|..|.++|..|+..|.  +++++|.+.
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            456799999999999999999999874  899999765

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.50  E-value=0.00075  Score=56.08  Aligned_cols=33  Identities=24%  Similarity=0.450  Sum_probs=30.2

Q ss_pred             CeEEEECCCccHHHHHHHHhhcc--CceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g--~~vt~~~r~~  219 (303)
                      |+|+|||+|.+|+-+|..|++.+  .+|++++|++
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            79999999999999999998776  5899999996

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.44  E-value=0.00085  Score=52.45  Aligned_cols=32  Identities=31%  Similarity=0.456  Sum_probs=29.6

Q ss_pred             eEEEECCCccHHHHHHHHhhc--cCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANH--AAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~--g~~vt~~~r~~  219 (303)
                      +|+|||+|++|+.+|..|.+.  +.+||++++.+
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            899999999999999999776  67999999987

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=96.41  E-value=0.00094  Score=53.58  Aligned_cols=32  Identities=31%  Similarity=0.427  Sum_probs=30.3

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .|+|||+|.+|+-+|..|+++|.+|+++++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999864

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.41  E-value=0.0014  Score=45.23  Aligned_cols=37  Identities=19%  Similarity=0.236  Sum_probs=33.0

Q ss_pred             CCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..++++|+|||+|.+|..-|..|.+.|.+|+++....
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            3568999999999999999999999999999986554

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.38  E-value=0.002  Score=44.36  Aligned_cols=35  Identities=14%  Similarity=0.111  Sum_probs=31.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..++|+|||+|..|..-|..|.+.|.+|++++...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            35799999999999999999999999999998654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.37  E-value=0.00096  Score=51.77  Aligned_cols=34  Identities=24%  Similarity=0.364  Sum_probs=31.1

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ...++|||+|+.|+++|..++++|.+|+++++.+
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            3579999999999999999999999999998764

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.37  E-value=0.00092  Score=50.77  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=31.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +.+|+|||+|.-|.++|..|++.|.+|+++.+++
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            4589999999999999999999999999998765

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.36  E-value=0.00093  Score=54.12  Aligned_cols=33  Identities=21%  Similarity=0.402  Sum_probs=31.4

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+|+|||+|.+|+-+|..|++.|.+|++++|++
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            379999999999999999999999999999986

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.36  E-value=0.0017  Score=48.02  Aligned_cols=32  Identities=22%  Similarity=0.257  Sum_probs=30.4

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +|.|||.|..|.+.|+.|.++|++|+.+|+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            69999999999999999999999999999875

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0012  Score=51.05  Aligned_cols=32  Identities=19%  Similarity=0.317  Sum_probs=30.0

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++|||+|+.|+++|..++++|.+|+++++..
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            58999999999999999999999999999864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.0012  Score=47.97  Aligned_cols=34  Identities=15%  Similarity=0.327  Sum_probs=31.2

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~   39 (303)
                      ..++|+|||||..|+.-|..|.+.|.+|+++.+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4679999999999999999999999999999654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.32  E-value=0.0013  Score=50.96  Aligned_cols=33  Identities=24%  Similarity=0.434  Sum_probs=31.1

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -.|+|||+|++|+++|..+++.|.+|+++++.+
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            479999999999999999999999999999876

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0011  Score=55.02  Aligned_cols=32  Identities=31%  Similarity=0.398  Sum_probs=30.0

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            48999999999999999999999999999865

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.0024  Score=44.59  Aligned_cols=41  Identities=17%  Similarity=0.318  Sum_probs=35.3

Q ss_pred             CCCCCCCCcEEEECCcH-----------HHHHHHHHHhhCCCCeEEEecCCC
Q 022090            1 MKEQAAGVEVIMVGAGT-----------SGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~-----------aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      |......++|+|||+|+           ++..++..|++.|++++++..++.
T Consensus         1 mp~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             CCCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            65555678999999985           889999999999999999988874

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=96.26  E-value=0.0012  Score=52.37  Aligned_cols=33  Identities=18%  Similarity=0.360  Sum_probs=31.3

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK   37 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            479999999999999999999999999999986

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=96.23  E-value=0.0013  Score=51.93  Aligned_cols=32  Identities=31%  Similarity=0.531  Sum_probs=30.5

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   35 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            69999999999999999999999999999876

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.19  E-value=0.0017  Score=51.84  Aligned_cols=33  Identities=30%  Similarity=0.513  Sum_probs=30.8

Q ss_pred             CeEEEECCCccHHHHHHHHhhccC-ceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~  219 (303)
                      -+|+|||+|.+|+-+|..|++.|. +|++++|++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            479999999999999999999995 899999987

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=96.18  E-value=0.0014  Score=53.44  Aligned_cols=32  Identities=19%  Similarity=0.522  Sum_probs=29.4

Q ss_pred             eEEEECCCccHHHHHHHHhhcc-CceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g-~~vt~~~r~~  219 (303)
                      +|+|||+|.+|+-+|..|+++| ++|++++|++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            7999999999999999999999 4799999874

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.12  E-value=0.0018  Score=50.00  Aligned_cols=33  Identities=30%  Similarity=0.463  Sum_probs=30.6

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..++|||+|+.|+++|..+++.|.+|+++++..
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            469999999999999999999999999998864

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.08  E-value=0.0036  Score=45.65  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=31.1

Q ss_pred             CCCCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            5 AAGVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      .++++|+|||+|..|.++|..|...++ +++++|.++
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            356899999999999999998888886 799998765

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=96.06  E-value=0.0018  Score=52.03  Aligned_cols=32  Identities=41%  Similarity=0.558  Sum_probs=30.0

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .|+|||+|.+|+-+|..|+++|.+|+++++.+
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999864

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.03  E-value=0.0024  Score=47.91  Aligned_cols=31  Identities=29%  Similarity=0.231  Sum_probs=29.1

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~   39 (303)
                      +|+|||+|.-|.+.|..|++.|.+|.++.|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            7999999999999999999999999998764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.03  E-value=0.0023  Score=49.92  Aligned_cols=32  Identities=31%  Similarity=0.516  Sum_probs=30.6

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++|||+|+.|+.+|..+++.|.+|+++++.+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            69999999999999999999999999999876

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.0051  Score=42.05  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=32.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ...+|.|||||.-|..+|..+.+.|+++.++|+++.
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            346899999999999999999999999999998764

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.99  E-value=0.002  Score=48.32  Aligned_cols=33  Identities=27%  Similarity=0.210  Sum_probs=31.3

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++.|||+|..|.-+|..|++.|.+|+++.|++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            789999999999999999999999999999875

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.94  E-value=0.0042  Score=44.92  Aligned_cols=39  Identities=31%  Similarity=0.519  Sum_probs=32.4

Q ss_pred             CCCCCCCCcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCC
Q 022090            1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~   40 (303)
                      |++ ....+|.|||+|..|.++|..|...+.  +++++|.++
T Consensus         1 m~~-~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           1 MKN-NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             CTT-TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCC-CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            543 345789999999999999999999876  799999764

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=95.93  E-value=0.0024  Score=51.39  Aligned_cols=34  Identities=24%  Similarity=0.546  Sum_probs=31.0

Q ss_pred             CCeEEEECCCccHHHHHHHHhh-ccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLAN-HAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~-~g~~vt~~~r~~  219 (303)
                      ...|+|||+|++|+.+|..|++ .|.+|+++++++
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            4679999999999999999987 599999999986

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.91  E-value=0.0027  Score=49.27  Aligned_cols=32  Identities=25%  Similarity=0.421  Sum_probs=30.4

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .|+|||+|+.|+.+|..+++.|.+|+++++++
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            68999999999999999999999999999876

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.89  E-value=0.0048  Score=46.01  Aligned_cols=33  Identities=9%  Similarity=0.194  Sum_probs=31.4

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|.|||-|..|...|.+|.++|++|.++|+++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            589999999999999999999999999999876

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0028  Score=48.88  Aligned_cols=32  Identities=28%  Similarity=0.457  Sum_probs=29.7

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++|||+|+.|+++|..+++.|.+|+++++..
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            58999999999999999999999999998753

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.82  E-value=0.0056  Score=48.63  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=31.7

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .-.++|||+|..|+++|..++++|.+|+++++.+
T Consensus        42 ~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            3479999999999999999999999999999877

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.71  E-value=0.0041  Score=45.71  Aligned_cols=33  Identities=15%  Similarity=0.232  Sum_probs=31.0

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ++|.+||-|..|...|++|.++|++|.++|++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            479999999999999999999999999999875

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.0034  Score=46.07  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=31.9

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecCeee
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV  222 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~  222 (303)
                      +|+|||+|..|.-+|..|++.|.+|+++.|++...
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~   36 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPY   36 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHh
Confidence            68999999999999999999999999999887433

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.69  E-value=0.0051  Score=46.22  Aligned_cols=32  Identities=25%  Similarity=0.314  Sum_probs=29.7

Q ss_pred             cEEEE-CCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMV-GAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvII-GaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +|+|| |+|..|.++|..|+++|++|++..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            68999 679999999999999999999999875

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=95.67  E-value=0.0032  Score=51.33  Aligned_cols=32  Identities=38%  Similarity=0.686  Sum_probs=30.5

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .|+|||+|.+|+-+|..+++.|.+|.++++.+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            79999999999999999999999999999875

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.65  E-value=0.0076  Score=44.05  Aligned_cols=35  Identities=20%  Similarity=0.366  Sum_probs=31.3

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~   40 (303)
                      .+.+|.|||+|..|.++|..|...|.  ++.++|.+.
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            35699999999999999999999987  799999864

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.009  Score=41.02  Aligned_cols=36  Identities=8%  Similarity=0.198  Sum_probs=32.0

Q ss_pred             CCCcEEEECCc-----------HHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            6 AGVEVIMVGAG-----------TSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG-----------~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ..++|+|||+|           +++..+++.|++.|++++++..++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            45789999998           5899999999999999999988764

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0033  Score=47.66  Aligned_cols=33  Identities=33%  Similarity=0.361  Sum_probs=31.7

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ++|.|||+|..|..+|..++..|.+|+++.+++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            799999999999999999999999999998887

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.54  E-value=0.0042  Score=47.86  Aligned_cols=32  Identities=31%  Similarity=0.508  Sum_probs=29.8

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++|||+|+.|+.+|..+++.|.+|.++++..
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            69999999999999999999999999998753

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.52  E-value=0.0046  Score=48.14  Aligned_cols=32  Identities=19%  Similarity=0.408  Sum_probs=30.1

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++|||+|+.|+.+|..+++.|.+|.++++.+
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            69999999999999999999999999999765

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.52  E-value=0.0077  Score=43.18  Aligned_cols=33  Identities=21%  Similarity=0.345  Sum_probs=29.6

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~   40 (303)
                      .+|+|||+|..|.++|..|...+.  +++++|.+.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            589999999999999999999876  799998764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.50  E-value=0.0054  Score=46.50  Aligned_cols=31  Identities=23%  Similarity=0.312  Sum_probs=28.0

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +|+|||.|..|+.+|..|+ .|++|+.+|-++
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            6999999999999998776 699999999775

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.48  E-value=0.0043  Score=50.50  Aligned_cols=34  Identities=26%  Similarity=0.356  Sum_probs=31.4

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .-+|+|||+|.+|+-+|..|.+.|.+|+++++.+
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            3579999999999999999999999999999875

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=95.45  E-value=0.0049  Score=47.95  Aligned_cols=31  Identities=42%  Similarity=0.613  Sum_probs=29.1

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeec
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~  218 (303)
                      .|+|||+|..|+|+|...++.|.++-++..+
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~   34 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQS   34 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEec
Confidence            6999999999999999999999999999765

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.44  E-value=0.0065  Score=43.74  Aligned_cols=33  Identities=27%  Similarity=0.483  Sum_probs=29.2

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~   40 (303)
                      ++|.|||+|..|.++|..|..+|.  +++++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            589999999999999999998875  789998754

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.0085  Score=44.31  Aligned_cols=35  Identities=20%  Similarity=0.311  Sum_probs=31.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..++|+|+|+|-++-+++..|.+.|.+++|+.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            45799999999999999999999999999998764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.0073  Score=38.20  Aligned_cols=34  Identities=15%  Similarity=0.072  Sum_probs=31.5

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      +.|.|||+|.-|...+....+.|+++.+++.++.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            4799999999999999999999999999998764

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.37  E-value=0.0092  Score=42.71  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=29.2

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSI--PYVILERENC   41 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~~   41 (303)
                      .+|.|||+|..|.++|..|...+.  ++.++|.+..
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            589999999999999999999876  7999997653

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=95.34  E-value=0.0047  Score=50.68  Aligned_cols=33  Identities=30%  Similarity=0.629  Sum_probs=30.9

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -.|+|||+|.+|+-+|..+++.|.+|.++++.+
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            369999999999999999999999999999875

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.32  E-value=0.0064  Score=44.56  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=30.4

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +|.|||-|..|...|.+|.++|++|.++|+++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            69999999999999999999999999999875

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.26  E-value=0.009  Score=42.77  Aligned_cols=33  Identities=27%  Similarity=0.440  Sum_probs=29.2

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      .+|.|||+|..|.++|..|...+. +++++|...
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            589999999999999999988876 889998754

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.25  E-value=0.0043  Score=46.74  Aligned_cols=33  Identities=24%  Similarity=0.239  Sum_probs=31.5

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ++|.|||+|..|..+|..++..|.+|+++.+++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            689999999999999999999999999999886

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.23  E-value=0.01  Score=44.10  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=30.4

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +|-|||-|..|...|++|.++|++|.++|++.
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            69999999999999999999999999999865

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.18  E-value=0.01  Score=43.66  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=28.7

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~   40 (303)
                      ++|+|||.|..|-+.|+.|.+.|+  +|..+|++.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            479999999999999999999986  567788765

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.09  E-value=0.0068  Score=42.77  Aligned_cols=33  Identities=24%  Similarity=0.246  Sum_probs=30.9

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      |+++|||.|..|..+|..|.+.|.+|+++..++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            679999999999999999999999999998776

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.08  E-value=0.012  Score=42.00  Aligned_cols=32  Identities=28%  Similarity=0.481  Sum_probs=28.9

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCC--CeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~   40 (303)
                      +|+|||+|..|.++|..|...+.  +++++|.++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            79999999999999999999874  899999765

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=95.06  E-value=0.0066  Score=49.69  Aligned_cols=33  Identities=36%  Similarity=0.613  Sum_probs=30.8

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -.|+|||+|.+|+-+|..+++.|.+|.++++.+
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            369999999999999999999999999999875

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=95.06  E-value=0.0063  Score=50.20  Aligned_cols=32  Identities=28%  Similarity=0.487  Sum_probs=29.4

Q ss_pred             eEEEECCCccHHHHHHHHh-----hccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLA-----NHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~-----~~g~~vt~~~r~~  219 (303)
                      .|+|||+|.+|+-+|..|+     +.|.+|++++|++
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            6999999999999999997     4689999999987

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.04  E-value=0.015  Score=41.91  Aligned_cols=34  Identities=18%  Similarity=0.381  Sum_probs=29.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      +.+|.|||+|..|-++|..|...+. +++++|.+.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            4689999999999999998888775 789998765

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.03  E-value=0.023  Score=43.64  Aligned_cols=34  Identities=29%  Similarity=0.492  Sum_probs=28.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHh--------------------hCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLS--------------------LQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~--------------------~~g~-~v~iie~~~   40 (303)
                      .++|+|||+|-.++=+|+.|.                    +.|. +|+++-|..
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            479999999999999999887                    4565 688888764

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.02  E-value=0.016  Score=42.24  Aligned_cols=34  Identities=21%  Similarity=0.510  Sum_probs=30.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~   40 (303)
                      ..+|.|||+|..|.++|..|...+.  +++++|.+.
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4589999999999999999999976  799998764

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=94.99  E-value=0.0065  Score=50.78  Aligned_cols=32  Identities=34%  Similarity=0.437  Sum_probs=30.1

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++|||+|..|+-+|..|++.|.+|+++++..
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            68999999999999999999999999999864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.98  E-value=0.014  Score=42.92  Aligned_cols=35  Identities=20%  Similarity=0.217  Sum_probs=31.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ...|+|+|+|+.|+.++..++..|.+|+++++++.
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            45799999999999999988888999999998753

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=94.97  E-value=0.008  Score=50.10  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=30.1

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .|+|||+|..|+-+|..|++.|.+|.++++..
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            58999999999999999999999999999964

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.94  E-value=0.0028  Score=49.45  Aligned_cols=30  Identities=23%  Similarity=0.347  Sum_probs=26.2

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEee
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVR  217 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r  217 (303)
                      +|+|||+|.+|+-+|..|++.|.+|+++++
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            699999999999999999999987665544

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.94  E-value=0.0085  Score=47.46  Aligned_cols=32  Identities=41%  Similarity=0.642  Sum_probs=29.8

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++|||+|+.|..+|..++++|.+|.++++..
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            48999999999999999999999999999753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.90  E-value=0.013  Score=43.12  Aligned_cols=34  Identities=26%  Similarity=0.380  Sum_probs=30.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .-.|+|+|+|+.|+.++..++..|.+|+++|+++
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            3579999999999999999999999999999875

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=94.82  E-value=0.0079  Score=49.41  Aligned_cols=32  Identities=25%  Similarity=0.443  Sum_probs=29.9

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .|+|||+|.+|+-+|..+++.|.+|.++++.+
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            59999999999999999999999999998754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.75  E-value=0.016  Score=42.58  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=31.0

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      ..++|+|||+|-++-+++..|.+.|. ++.|+.|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            35689999999999999999999997 789988764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.017  Score=42.56  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=30.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      .-.|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            3579999999999999999999998 689998875

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.69  E-value=0.014  Score=42.14  Aligned_cols=32  Identities=19%  Similarity=0.171  Sum_probs=29.7

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +|.|||.|..|...|..|+++|++++++++.+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            69999999999999999999999999988655

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.67  E-value=0.0072  Score=49.33  Aligned_cols=35  Identities=29%  Similarity=0.488  Sum_probs=31.3

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhc--cCceEEEeecC
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANH--AAKTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~--g~~vt~~~r~~  219 (303)
                      ....|+|||+|++|+.+|..|+++  |.+|+++++.+
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            356799999999999999999965  89999999986

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.67  E-value=0.018  Score=42.16  Aligned_cols=34  Identities=15%  Similarity=0.233  Sum_probs=30.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+|+|+|+|+.|+.++..++..|.+|+++++++
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            4579999999999999999999999999998865

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=0.018  Score=43.66  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=31.1

Q ss_pred             CCcEEEECC-cHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGa-G~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +++|+|+|| |..|-.++.+|.++|++|+++.|++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            468999995 9999999999999999999998865

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.55  E-value=0.029  Score=40.35  Aligned_cols=32  Identities=13%  Similarity=0.155  Sum_probs=30.4

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .|+|+|.|..|..++..|.+.|.+++++|.++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            59999999999999999999999999999875

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.51  E-value=0.017  Score=41.27  Aligned_cols=32  Identities=22%  Similarity=0.252  Sum_probs=28.5

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCC--CeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~   40 (303)
                      +|.|||+|..|.++|..|...+.  +++++|.+.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            79999999999999999998875  799998764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.49  E-value=0.019  Score=42.77  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=30.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      .-+|+|+|+|+.|+.++..++..|. +|+++|+++
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCEEEEECCCccchhheeccccccccccccccccc
Confidence            4589999999999999999999998 689998865

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.43  E-value=0.019  Score=41.98  Aligned_cols=36  Identities=19%  Similarity=0.198  Sum_probs=33.4

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++.+|+|+|+|..|...+....++|.+|+++..+.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            357899999999999999999999999999998876

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.40  E-value=0.013  Score=41.17  Aligned_cols=32  Identities=19%  Similarity=0.368  Sum_probs=30.2

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|+|+|+|..|..+|..|.+.|.+|+++.+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            68999999999999999999999999998876

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=94.40  E-value=0.012  Score=48.86  Aligned_cols=32  Identities=28%  Similarity=0.399  Sum_probs=30.4

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++|||+|..|+-+|..|++.|.+|.++++.+
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~   37 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGE   37 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecCC
Confidence            69999999999999999999999999999875

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.016  Score=44.45  Aligned_cols=33  Identities=18%  Similarity=0.409  Sum_probs=28.6

Q ss_pred             CeEEEECCCccHHHHHHHHhhccC--ceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAA--KTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~--~vt~~~r~~  219 (303)
                      .+++|||+|.+|+++|..|.+.+.  +|+++.+.+
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~   39 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDP   39 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            468999999999999999988865  599998765

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.21  E-value=0.022  Score=40.56  Aligned_cols=32  Identities=25%  Similarity=0.473  Sum_probs=28.1

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCC--CeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSI--PYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~   40 (303)
                      +|.|||+|..|.++|..|...+.  ++.++|.+.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            79999999999999999988875  789998664

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.19  E-value=0.019  Score=41.03  Aligned_cols=32  Identities=19%  Similarity=0.316  Sum_probs=28.1

Q ss_pred             cEEEECC-cHHHHHHHHHHhhCCC--CeEEEecCC
Q 022090            9 EVIMVGA-GTSGLATAACLSLQSI--PYVILEREN   40 (303)
Q Consensus         9 ~vvIIGa-G~aGl~~A~~l~~~g~--~v~iie~~~   40 (303)
                      +|+|||| |..|.++|..|...+.  +++++|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            7999996 9999999999999886  689998654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.18  E-value=0.0084  Score=45.22  Aligned_cols=33  Identities=21%  Similarity=0.345  Sum_probs=30.4

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ++|+|||+|..|.-+|..|++.|++|+++.|++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            579999999999999999999999999998754

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.16  E-value=0.021  Score=42.04  Aligned_cols=37  Identities=19%  Similarity=0.342  Sum_probs=33.6

Q ss_pred             CCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ...+++|+|+|+|-+|--++..|.+.|.+++++.|+.
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            4568999999999999999999999999999998876

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.12  E-value=0.024  Score=40.57  Aligned_cols=32  Identities=38%  Similarity=0.586  Sum_probs=28.7

Q ss_pred             cEEEECC-cHHHHHHHHHHhhCCC--CeEEEecCC
Q 022090            9 EVIMVGA-GTSGLATAACLSLQSI--PYVILEREN   40 (303)
Q Consensus         9 ~vvIIGa-G~aGl~~A~~l~~~g~--~v~iie~~~   40 (303)
                      +|.|||| |..|.++|..|...+.  ++.++|.+.
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            6999996 9999999999999985  899999764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.09  E-value=0.025  Score=45.09  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=32.1

Q ss_pred             CCcEEEECC-cHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGa-G~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      +++|+|+|| |..|-.++..|.+.|++|++++|+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            578999997 99999999999999999999998653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.00  E-value=0.032  Score=40.81  Aligned_cols=34  Identities=21%  Similarity=0.184  Sum_probs=30.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ...|+|+|+|..|+.++..++..|.++++++.++
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            4579999999999999999999999998988765

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.95  E-value=0.025  Score=41.92  Aligned_cols=35  Identities=20%  Similarity=0.170  Sum_probs=32.8

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+.+|+|+|+|..|...+....++|++|+++..++
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            46899999999999999999999999999998876

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.91  E-value=0.029  Score=44.95  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=31.5

Q ss_pred             CCcEEEECC-cHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGa-G~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      +.+|+|+|| |..|..++.+|.++|++|+++.|+..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            568999996 99999999999999999999988653

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.90  E-value=0.017  Score=48.55  Aligned_cols=33  Identities=27%  Similarity=0.540  Sum_probs=30.3

Q ss_pred             CeEEEECCCccHHHHHHHHhh------ccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLAN------HAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~------~g~~vt~~~r~~  219 (303)
                      -.|+|||+|++|.-+|..|++      .|.+|.+++|..
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            479999999999999999997      689999999975

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.87  E-value=0.033  Score=41.11  Aligned_cols=34  Identities=24%  Similarity=0.381  Sum_probs=30.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      .-.|+|+|+|+.|+.++..++..|. +|+++|+++
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            4579999999999999999999997 788898765

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=93.81  E-value=0.038  Score=40.16  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=30.5

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      ..++|+|||+|-.|-.+|..|...|. +++++.|..
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            45789999999999999999999998 588887653

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=93.76  E-value=0.014  Score=47.86  Aligned_cols=33  Identities=24%  Similarity=0.496  Sum_probs=30.4

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -.|+|||+|..|+-+|..+++.|.+|+++++.+
T Consensus         8 ~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~   40 (330)
T d1neka2           8 FDAVVIGAGGAGMRAALQISQSGQTCALLSKVF   40 (330)
T ss_dssp             ESCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            469999999999999999999999999998764

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.62  E-value=0.02  Score=42.67  Aligned_cols=32  Identities=31%  Similarity=0.434  Sum_probs=29.5

Q ss_pred             eEEEE-CCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVV-GSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~Vi-G~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|.|| |+|..|.-+|..|++.|++|+++.|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58899 679999999999999999999999886

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.048  Score=40.51  Aligned_cols=35  Identities=20%  Similarity=0.432  Sum_probs=30.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      ..++|+|||+|-++-+++..|.+.|. +++++.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            35799999999999999999999988 688888865

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.50  E-value=0.036  Score=39.87  Aligned_cols=32  Identities=16%  Similarity=0.167  Sum_probs=29.6

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +|.|||+|-.|.+.|..|.+.++++++++++.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            69999999999999999999999999998764

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=93.32  E-value=0.034  Score=40.94  Aligned_cols=35  Identities=20%  Similarity=0.209  Sum_probs=31.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..++|+|+|+|-++-+++..|.+.+.+++|+.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            45789999999999999999998888999998874

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.29  E-value=0.03  Score=41.59  Aligned_cols=31  Identities=16%  Similarity=0.343  Sum_probs=29.0

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeec
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~  218 (303)
                      +|.|||+|..|.-+|..|++.|.+|+++.|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            5899999999999999999999999999874

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=93.28  E-value=0.039  Score=39.66  Aligned_cols=32  Identities=28%  Similarity=0.317  Sum_probs=28.9

Q ss_pred             cEEEECCcHHHHHHHHHHhhCC-CCeEEEecCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQS-IPYVILEREN   40 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~   40 (303)
                      +|.+||+|..|-+.|..|.+.| .++.+++|++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            7999999999999999998887 7999998875

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.10  E-value=0.037  Score=43.31  Aligned_cols=34  Identities=24%  Similarity=0.430  Sum_probs=30.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      ..+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            3689999999999999999999998 789998764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.02  E-value=0.046  Score=40.90  Aligned_cols=38  Identities=32%  Similarity=0.367  Sum_probs=34.6

Q ss_pred             CCCCCCeEEEEC-CCccHHHHHHHHhhccCceEEEeecC
Q 022090          182 KPYGGKNVLVVG-SGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       182 ~~~~~~~v~ViG-~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+++|+++|.| +|-+|.++|..|++.|.+|+++.|+.
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            456789999999 58999999999999999999999986

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.93  E-value=0.03  Score=43.36  Aligned_cols=32  Identities=22%  Similarity=0.414  Sum_probs=27.1

Q ss_pred             eEEEECCCccHHHHHHHHhhcc---CceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHA---AKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g---~~vt~~~r~~  219 (303)
                      +|+|||+|+.|+.+|..+++++   .+|+++++..
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            7999999999999998887776   4688998754

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=92.89  E-value=0.047  Score=39.61  Aligned_cols=36  Identities=31%  Similarity=0.438  Sum_probs=32.0

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecC
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~  219 (303)
                      +.+++++|||+|.+|..++..|...|. +++++.|+.
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            567999999999999999999999986 588888875

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.049  Score=39.52  Aligned_cols=34  Identities=24%  Similarity=0.279  Sum_probs=32.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+.|+|||-|..|-.+|..|+..|.+|+++|.++
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            5789999999999999999999999999999875

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.73  E-value=0.064  Score=39.50  Aligned_cols=34  Identities=15%  Similarity=0.323  Sum_probs=28.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCC-eEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~~   40 (303)
                      .-.|+|+|+|+.|+.++..++..|.+ |++.|.++
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            35799999999999999999999985 66667654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=92.70  E-value=0.058  Score=39.42  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=31.5

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecC
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~  219 (303)
                      ++++|+|+|+|-+|--++..|.+.|. +++++.|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            46899999999999999999999995 799988876

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.54  E-value=0.062  Score=40.39  Aligned_cols=34  Identities=32%  Similarity=0.424  Sum_probs=28.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      .-.|+|+|+|+.|+.++..++..|. +|+++|.++
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            4589999999999999999988887 677887764

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.54  E-value=0.058  Score=39.81  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=29.4

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..++|+|||+|-++-+++..|.+.| ++.|+.|+.
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            4578999999999999999998777 899988764

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=92.40  E-value=0.041  Score=45.63  Aligned_cols=32  Identities=28%  Similarity=0.435  Sum_probs=30.1

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++|||+|..|+=+|..|++.|.+|.++++.+
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            68999999999999999999999999999885

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.37  E-value=0.06  Score=39.08  Aligned_cols=34  Identities=18%  Similarity=0.221  Sum_probs=30.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ...|+|+|+|+.|+.++..++..|.+|++++.++
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            4579999999999999999999999999988754

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=92.34  E-value=0.049  Score=39.36  Aligned_cols=34  Identities=24%  Similarity=0.280  Sum_probs=32.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .++++|+|-|..|-.+|.+|+..|.+|++.|.++
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            5799999999999999999999999999999887

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.29  E-value=0.11  Score=38.80  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=31.6

Q ss_pred             CCCcEEEEC-CcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVG-AGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIG-aG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+.|+|.| +|-.|..+|+.|+++|.+|++++|+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            457899999 69999999999999999999999875

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=92.28  E-value=0.069  Score=42.58  Aligned_cols=34  Identities=26%  Similarity=0.336  Sum_probs=31.1

Q ss_pred             CCeEEEECC-CccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGS-GNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~-G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++|+|.|+ |.+|..++..|.+.|.+|+.+.|++
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            467999996 9999999999999999999999976

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=92.27  E-value=0.05  Score=38.98  Aligned_cols=34  Identities=24%  Similarity=0.248  Sum_probs=31.5

Q ss_pred             CCeEEEEC-CCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVG-SGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG-~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -++|.||| .|..|.-+|..|.+.|.+|+++.|..
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            47999999 79999999999999999999998876

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.25  E-value=0.063  Score=38.91  Aligned_cols=38  Identities=26%  Similarity=0.344  Sum_probs=35.0

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       182 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+.+|+++|+|-|.+|--+|..+...|.+|++.+..|
T Consensus        20 ~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          20 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            45679999999999999999999999999999998876

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.24  E-value=0.04  Score=40.09  Aligned_cols=32  Identities=31%  Similarity=0.269  Sum_probs=29.6

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|.|||.|..|.-+|..|.+.|.+|+.+.|++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            58999999999999999999999999988865

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.24  E-value=0.063  Score=39.58  Aligned_cols=35  Identities=14%  Similarity=0.222  Sum_probs=30.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~   41 (303)
                      .-.|+|+|+|..|+.++..++..|. +|+++|.++.
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            3469999999999999999999995 7999998763

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.05  E-value=0.075  Score=37.66  Aligned_cols=31  Identities=35%  Similarity=0.518  Sum_probs=27.2

Q ss_pred             cEEEEC-CcHHHHHHHHHHhhCCC--CeEEEecC
Q 022090            9 EVIMVG-AGTSGLATAACLSLQSI--PYVILERE   39 (303)
Q Consensus         9 ~vvIIG-aG~aGl~~A~~l~~~g~--~v~iie~~   39 (303)
                      +|.||| +|..|.++|..|...+.  ++.++|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            799999 69999999999999876  68888853

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.01  E-value=0.048  Score=34.23  Aligned_cols=33  Identities=21%  Similarity=0.124  Sum_probs=29.8

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      |+|.|+|+|.-|..++.+..++|.++.++...+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            589999999999999999999999998886554

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.93  E-value=0.058  Score=39.78  Aligned_cols=35  Identities=23%  Similarity=0.452  Sum_probs=30.8

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++++++|+|+|-+|--++..|.+.+ +|+++.|+.
T Consensus        16 ~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          16 VKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            57899999999999999999998776 899888876

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=91.90  E-value=0.054  Score=39.77  Aligned_cols=37  Identities=22%  Similarity=0.301  Sum_probs=33.0

Q ss_pred             CCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ...+++++|+|+|-+|--++..|.+.+.+|+++.|+.
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            4568999999999999999999998888999998886

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.064  Score=40.43  Aligned_cols=35  Identities=17%  Similarity=0.391  Sum_probs=31.7

Q ss_pred             CCeEEEECC-CccHHHHHHHHhhccCceEEEeecCe
Q 022090          186 GKNVLVVGS-GNSGMEIALDLANHAAKTSLVVRSPV  220 (303)
Q Consensus       186 ~~~v~ViG~-G~~g~e~a~~l~~~g~~vt~~~r~~~  220 (303)
                      -++|+|+|+ |.+|-.++..|.+.|.+|+++.|++.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            478999995 99999999999999999999999763

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.81  E-value=0.13  Score=34.62  Aligned_cols=34  Identities=26%  Similarity=0.431  Sum_probs=31.0

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+|.|+|+|..|..++.+..++|.++.++..++
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~   44 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYA   44 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4589999999999999999999999999987765

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.55  E-value=0.059  Score=42.45  Aligned_cols=33  Identities=15%  Similarity=0.334  Sum_probs=30.4

Q ss_pred             CcEEEECC-cHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGa-G~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+|+|.|| |..|-.++..|.++|++|+.+++..
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            47999998 9999999999999999999998865

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=91.44  E-value=0.13  Score=41.97  Aligned_cols=35  Identities=14%  Similarity=0.081  Sum_probs=31.6

Q ss_pred             CCCcEEEECC-cHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGa-G~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .++.|+|+|| |..|-.++..|.+.|++|+++-|+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            4678999996 9999999999999999999998864

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.43  E-value=0.049  Score=37.83  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=27.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC-CCCe-EEEecCCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ-SIPY-VILERENCY   42 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~-g~~v-~iie~~~~~   42 (303)
                      +++|+|+|||-+|.+++..+... ++++ ..||.++..
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            46899999999999998876543 6665 677776654

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.43  E-value=0.059  Score=44.24  Aligned_cols=33  Identities=30%  Similarity=0.501  Sum_probs=27.6

Q ss_pred             CeEEEECCCccHHHHHHHHhh----ccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLAN----HAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~----~g~~vt~~~r~~  219 (303)
                      -.|+|||+|.+|+-+|..+++    .|.+|.++++.+
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~   58 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   58 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence            479999999999888888765    588999998753

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.22  E-value=0.087  Score=40.19  Aligned_cols=35  Identities=23%  Similarity=0.485  Sum_probs=30.9

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..++|+|||+|-+|+-+|..|++.+.+++++-+..
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            35799999999999999999999999888776665

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=91.13  E-value=0.059  Score=43.38  Aligned_cols=32  Identities=34%  Similarity=0.726  Sum_probs=28.6

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      -.|+|||+|..|+-+|..+++.| +|.+++..+
T Consensus         8 ~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~   39 (305)
T d1chua2           8 CDVLIIGSGAAGLSLALRLADQH-QVIVLSKGP   39 (305)
T ss_dssp             CSEEEECCSHHHHHHHHHHTTTS-CEEEECSSC
T ss_pred             CCEEEECccHHHHHHHHHhhcCC-CEEEEECCC
Confidence            47999999999999999998877 899998865

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=91.01  E-value=0.098  Score=37.74  Aligned_cols=38  Identities=24%  Similarity=0.328  Sum_probs=35.5

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       182 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+.+|+++|+|-|..|-=+|..+...|.+|++.+..|
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            45679999999999999999999999999999999887

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.00  E-value=0.17  Score=37.29  Aligned_cols=37  Identities=30%  Similarity=0.390  Sum_probs=33.8

Q ss_pred             CCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ...++++.|||.|.+|-.+|..+...|.+|+.+.|.+
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccCceEEEeccccccccceeeeeccccccccccccc
Confidence            3568999999999999999999999999999988776

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=90.98  E-value=0.1  Score=41.27  Aligned_cols=34  Identities=26%  Similarity=0.405  Sum_probs=31.6

Q ss_pred             CCeEEEECC-CccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGS-GNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~-G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++|+|.|+ |.+|-.++..|.+.|.+|+.+.|.+
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            478999997 9999999999999999999999976

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.95  E-value=0.076  Score=40.96  Aligned_cols=33  Identities=18%  Similarity=0.427  Sum_probs=28.4

Q ss_pred             CeEEEECCCccHHHHHHHHhhccC-ceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~  219 (303)
                      -.++|||+|+.|..+|..+++.|. +|.++++..
T Consensus         4 YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~   37 (240)
T d1feca1           4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK   37 (240)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred             cCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence            369999999999999999999985 588887665

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.92  E-value=0.17  Score=36.96  Aligned_cols=35  Identities=17%  Similarity=0.301  Sum_probs=28.1

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEE-EecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVI-LEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~i-ie~~~   40 (303)
                      +..+|+|+|+|+.|+.++..++..|.++++ .|+++
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            345799999999999999999999987654 45543

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.78  E-value=0.12  Score=36.62  Aligned_cols=32  Identities=28%  Similarity=0.319  Sum_probs=25.9

Q ss_pred             cEEEEC-CcHHHHHHHHHHhhC-C--CCeEEEecCC
Q 022090            9 EVIMVG-AGTSGLATAACLSLQ-S--IPYVILEREN   40 (303)
Q Consensus         9 ~vvIIG-aG~aGl~~A~~l~~~-g--~~v~iie~~~   40 (303)
                      +|.||| +|..|.++|..|... +  .++.++|..+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            799999 599999999988643 3  5899998653

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=90.78  E-value=0.12  Score=37.94  Aligned_cols=34  Identities=12%  Similarity=0.195  Sum_probs=29.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      .-.|+|+|+|+.|+.++..++..|. +|+++|.++
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            3469999999999999999999997 577877765

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=90.44  E-value=0.15  Score=37.57  Aligned_cols=37  Identities=22%  Similarity=0.325  Sum_probs=32.5

Q ss_pred             CCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecC
Q 022090          183 PYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~  219 (303)
                      ..++++|+|+|+|-+|--++..|...|. +++++.|++
T Consensus        15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            4578999999999999999999999876 588988886

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.38  E-value=0.12  Score=38.81  Aligned_cols=32  Identities=22%  Similarity=0.128  Sum_probs=29.0

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|.|||.|.+|.-+|..|+..|.+|+.+....
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            58999999999999999999999999887654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.31  E-value=0.11  Score=43.96  Aligned_cols=33  Identities=21%  Similarity=0.433  Sum_probs=30.7

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      .+|+|||+|-.|..+|+.|+..|+ +++|+|.+.
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            589999999999999999999998 899999765

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.14  E-value=0.18  Score=37.26  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=32.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .++|.|||.|..|-..|..|...|.+|..+++...
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CceEEEeccccccccceeeeecccccccccccccc
Confidence            56899999999999999999999999999998653

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.05  E-value=0.14  Score=37.12  Aligned_cols=37  Identities=32%  Similarity=0.258  Sum_probs=32.5

Q ss_pred             CCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ...+++|+|+|+|.+|.-++..+...|.+|..+.+++
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence            3467999999999999998888888899999888877

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=90.04  E-value=0.1  Score=43.62  Aligned_cols=32  Identities=19%  Similarity=0.448  Sum_probs=29.6

Q ss_pred             eEEEECCCccHHHHHHHHhhcc-CceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g-~~vt~~~r~~  219 (303)
                      .++|||+|.+|+-+|..|++.+ .+|.++++.+
T Consensus        26 D~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            6999999999999999999988 5899999886

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=89.85  E-value=0.16  Score=36.12  Aligned_cols=34  Identities=15%  Similarity=0.330  Sum_probs=30.8

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+++|+|.|..|..++..|...|.+|+++...+
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            3589999999999999999999999999998765

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.75  E-value=0.13  Score=37.07  Aligned_cols=33  Identities=18%  Similarity=0.257  Sum_probs=30.6

Q ss_pred             CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ++|.+||.|..|.-+|..|.+.|.+|+++.|++
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            479999999999999999999999999988875

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=89.60  E-value=0.12  Score=41.79  Aligned_cols=33  Identities=27%  Similarity=0.508  Sum_probs=28.6

Q ss_pred             CeEEEECCCccHHHHHHHHhhc--cCceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANH--AAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~--g~~vt~~~r~~  219 (303)
                      -.|+|||+|..|+-+|..+++.  +.+|.++++.+
T Consensus         6 ~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~   40 (311)
T d1kf6a2           6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY   40 (311)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred             cCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence            4699999999999999999987  56899998754

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.52  E-value=0.18  Score=40.19  Aligned_cols=39  Identities=23%  Similarity=0.288  Sum_probs=33.8

Q ss_pred             CCCCCCCeEEEECCC---ccHHHHHHHHhhccCceEEEeecC
Q 022090          181 GKPYGGKNVLVVGSG---NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       181 ~~~~~~~~v~ViG~G---~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +..+++|.++|.|++   -+|..+|..|++.|.+|.+..|++
T Consensus         3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~   44 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP   44 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence            355789999999976   599999999999999999888764

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=89.40  E-value=0.12  Score=42.11  Aligned_cols=36  Identities=28%  Similarity=0.304  Sum_probs=32.6

Q ss_pred             CCCCeEEEECC-CccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGS-GNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~-G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++|+|+|.|+ |.+|-.++..|...|.+|..+.|..
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            46799999995 8999999999999999999998865

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.29  E-value=0.17  Score=32.99  Aligned_cols=35  Identities=14%  Similarity=0.186  Sum_probs=30.9

Q ss_pred             CCCcEEEECCcHHHHHH-HHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLAT-AACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~-A~~l~~~g~~v~iie~~~   40 (303)
                      ..++|-+||-|=+|+++ |..|.++|++|+-.|...
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            45789999999999888 888999999999999764

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=89.28  E-value=0.16  Score=41.52  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=32.0

Q ss_pred             CCCeEEEECC-CccHHHHHHHHhhccCceEEEeecC
Q 022090          185 GGKNVLVVGS-GNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~-G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +.|+|+|+|+ |.+|-.++..|.+.|.+|+.+.|++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            3589999996 9999999999999999999999975

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.18  E-value=0.22  Score=36.17  Aligned_cols=33  Identities=15%  Similarity=0.214  Sum_probs=28.0

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      -.|+|+|+|+.|+.++..++..+. +|+.+++++
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            469999999999999999999877 577777765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=89.11  E-value=0.15  Score=36.94  Aligned_cols=36  Identities=33%  Similarity=0.406  Sum_probs=32.0

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+++|+|+|+|.+|.-++..+...|.+|..+.+++
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            357899999999999999999999999999888775

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=89.09  E-value=0.14  Score=42.12  Aligned_cols=31  Identities=29%  Similarity=0.513  Sum_probs=28.6

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .++|||+|..|+-+|..|++. .+|.++++.+
T Consensus        28 D~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          28 DYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             EEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             cEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            799999999999999999986 8999999886

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.84  E-value=0.19  Score=36.54  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=27.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      ...|+|+|+|+.|+.++..++..|. .|++.++++
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            4579999999999999999988886 556667654

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.75  E-value=0.43  Score=34.63  Aligned_cols=39  Identities=28%  Similarity=0.273  Sum_probs=33.5

Q ss_pred             CCCCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          181 GKPYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       181 ~~~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .....+|+++|||.+ ..|.=+|..|.+.|..||+++...
T Consensus        24 g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~   63 (171)
T d1edza1          24 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNN   63 (171)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSE
T ss_pred             cCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEecccc
Confidence            346789999999966 679999999999999999887654

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=88.62  E-value=0.17  Score=35.96  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=29.2

Q ss_pred             CCeEEEECCCccHHHHHHHHhhcc--CceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g--~~vt~~~r~~  219 (303)
                      ..+|.|||+|.+|.-+|..|+..+  .++.++.+..
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            468999999999999999999986  5788887654

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=88.58  E-value=0.28  Score=38.22  Aligned_cols=37  Identities=19%  Similarity=0.303  Sum_probs=33.2

Q ss_pred             CCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++|.++|.|++ -+|.++|..|++.|.+|.++.|+.
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~   39 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV   39 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            3678999999986 599999999999999999998886

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.57  E-value=0.24  Score=37.81  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=29.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC--------------------CC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ--------------------SI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~--------------------g~-~v~iie~~~   40 (303)
                      .++|+|||+|-.++=+|..|.+.                    |. +|.++.|..
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            57999999999999999999873                    54 799998875

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.52  E-value=0.16  Score=38.71  Aligned_cols=31  Identities=23%  Similarity=0.487  Sum_probs=26.7

Q ss_pred             eEEEECCCccHHHHHHHHhhccC-ceEEEeec
Q 022090          188 NVLVVGSGNSGMEIALDLANHAA-KTSLVVRS  218 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~  218 (303)
                      .++|||+|+.|+.+|..+++.+. +|.++++.
T Consensus         5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~~   36 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQ   36 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTSCCCEEEEESC
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEee
Confidence            68999999999999999999875 57777654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=88.49  E-value=0.18  Score=36.95  Aligned_cols=34  Identities=15%  Similarity=0.316  Sum_probs=31.6

Q ss_pred             CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+|.|||-|..|.-+|..|.+.|.+|+++.|++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            3689999999999999999999999999998887

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=88.40  E-value=0.28  Score=36.80  Aligned_cols=34  Identities=18%  Similarity=0.346  Sum_probs=30.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~   39 (303)
                      ..++|+|-|.|-.|..+|..|.+.|.+|++.|.+
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            4578999999999999999999999999988754

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=88.34  E-value=0.2  Score=36.79  Aligned_cols=36  Identities=25%  Similarity=0.427  Sum_probs=31.1

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecC
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~  219 (303)
                      ..+++|+|+|+|.+|.-++..+...|. +|+++.+++
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCCCEEEEECCCccchhheeccccccccccccccccc
Confidence            457999999999999999999988896 688888766

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=88.34  E-value=0.26  Score=40.01  Aligned_cols=34  Identities=18%  Similarity=0.111  Sum_probs=31.1

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVG-AGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIG-aG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .++|+|.| +|..|..++..|.++|++|..+++..
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            47899999 68999999999999999999999865

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.31  E-value=0.18  Score=36.22  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=29.8

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|.|||.|..|.-+|..|.+.|.+|+++.|++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            58999999999999999999999999988876

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=88.26  E-value=0.26  Score=38.08  Aligned_cols=36  Identities=28%  Similarity=0.302  Sum_probs=32.6

Q ss_pred             CCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++|.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            578999999986 599999999999999999998876

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.14  E-value=0.3  Score=39.94  Aligned_cols=34  Identities=12%  Similarity=0.146  Sum_probs=30.7

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVG-AGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIG-aG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .++|+|.| +|..|..++..|.++|++|+++|+..
T Consensus        15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            46899999 79999999999999999999998754

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=88.07  E-value=0.32  Score=36.94  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=29.8

Q ss_pred             CCCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      ...+|++.|+|.+|+.+|..+.+.+. ++.++|+.-
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G   60 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG   60 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence            34689999999999999999998876 678888753

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=88.07  E-value=0.24  Score=37.82  Aligned_cols=31  Identities=29%  Similarity=0.292  Sum_probs=26.3

Q ss_pred             CCccHHHHHHHHhhccCceEEEeecCeeeee
Q 022090          194 SGNSGMEIALDLANHAAKTSLVVRSPVHVLS  224 (303)
Q Consensus       194 ~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp  224 (303)
                      +|..|.++|.++..+|++||+++.......|
T Consensus        31 SGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p   61 (223)
T d1u7za_          31 SGKMGFAIAAAAARRGANVTLVSGPVSLPTP   61 (223)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEECSCCCCCC
T ss_pred             cHHHHHHHHHHHHHcCCchhhhhcccccCcc
Confidence            7889999999999999999999887643444

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=87.97  E-value=0.17  Score=42.12  Aligned_cols=32  Identities=16%  Similarity=0.383  Sum_probs=29.2

Q ss_pred             eEEEECCCccHHHHHHHHhhcc-CceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g-~~vt~~~r~~  219 (303)
                      .++|||+|..|+=+|..|++.+ .+|.++++.+
T Consensus        19 D~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          19 DYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            7899999999999999999876 6899999886

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.93  E-value=0.33  Score=37.51  Aligned_cols=40  Identities=30%  Similarity=0.374  Sum_probs=31.7

Q ss_pred             CCCCCCCCcEEEECCc-HHHHHHHHHHhhCCCCeEEEecCC
Q 022090            1 MKEQAAGVEVIMVGAG-TSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG-~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      |...-..+.++|.||+ -.|.++|+.|+++|.+|++.+++.
T Consensus         1 M~~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            5544456778888865 468899999999999999999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.90  E-value=0.2  Score=36.05  Aligned_cols=36  Identities=14%  Similarity=0.071  Sum_probs=31.6

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+++|+|+|+|.+|.-++..+...|.+|..+.+++
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            357899999999999999998988899998887775

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=87.87  E-value=0.26  Score=38.62  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=32.0

Q ss_pred             CCCCeEEEECCC---ccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSG---NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G---~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++|+++|.|++   -+|..+|..|++.|.+|.+..|++
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            568999999963   489999999999999999999875

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=87.85  E-value=0.25  Score=38.41  Aligned_cols=36  Identities=22%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             CCCCeEEEECCCc---cHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSGN---SGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G~---~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++|.++|.|++-   +|..+|..|++.|.+|.+..|++
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~   41 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   41 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence            5689999999764   78999999999999999998876

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=87.84  E-value=0.29  Score=38.88  Aligned_cols=39  Identities=15%  Similarity=0.176  Sum_probs=31.7

Q ss_pred             CCCCCCCCcEEEECCc---HHHHHHHHHHhhCCCCeEEEecC
Q 022090            1 MKEQAAGVEVIMVGAG---TSGLATAACLSLQSIPYVILERE   39 (303)
Q Consensus         1 M~~~~~~~~vvIIGaG---~aGl~~A~~l~~~g~~v~iie~~   39 (303)
                      |...-..+.++|-||+   -.|.++|+.|+++|.+|++.++.
T Consensus         2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            4334456789999986   58999999999999999998764

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=87.79  E-value=0.36  Score=38.28  Aligned_cols=33  Identities=21%  Similarity=0.188  Sum_probs=27.0

Q ss_pred             CcEEEEC-CcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVG-AGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIG-aG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +.++|-| +|-.|.++|..|+++|.+|++.+++.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3455555 67789999999999999999999875

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=87.77  E-value=0.31  Score=33.47  Aligned_cols=39  Identities=23%  Similarity=0.414  Sum_probs=32.7

Q ss_pred             CCCeEEEECCCc-----------cHHHHHHHHhhccCceEEEeecCeeee
Q 022090          185 GGKNVLVVGSGN-----------SGMEIALDLANHAAKTSLVVRSPVHVL  223 (303)
Q Consensus       185 ~~~~v~ViG~G~-----------~g~e~a~~l~~~g~~vt~~~r~~~~~l  223 (303)
                      ..++|+|+|+|+           +++.++.+|.+.|.++.++.-+|..+.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVs   55 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIM   55 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGG
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhh
Confidence            458999999986           688899999999999999988775443

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.73  E-value=0.31  Score=38.93  Aligned_cols=43  Identities=19%  Similarity=0.276  Sum_probs=36.7

Q ss_pred             cCCCCCCCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          177 QYKNGKPYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       177 ~~~~~~~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|..+..+++|.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         3 ~y~~~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1           3 SYLAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             CSBCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4555566789999999985 699999999999999999998875

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.69  E-value=0.21  Score=39.24  Aligned_cols=38  Identities=34%  Similarity=0.484  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          182 KPYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       182 ~~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+++|.++|.|++ -+|..+|..|++.|.+|.++.|+.
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            44789999999986 599999999999999999999875

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.52  E-value=0.35  Score=37.10  Aligned_cols=34  Identities=12%  Similarity=0.174  Sum_probs=29.8

Q ss_pred             CCcEEEECC-cHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGa-G~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+.|+|.|| |-.|.++|+.|+++|.+|.++++..
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            468999997 5589999999999999999998765

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=87.37  E-value=0.22  Score=37.27  Aligned_cols=38  Identities=26%  Similarity=0.267  Sum_probs=33.4

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       182 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+.++++.|||.|.+|-++|..+...|.+|..+.+.+
T Consensus        41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccccceeeeeeecccccccccccccccceeeeccCCcc
Confidence            44568999999999999999999999999998877654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.28  E-value=0.31  Score=37.84  Aligned_cols=37  Identities=30%  Similarity=0.447  Sum_probs=31.7

Q ss_pred             CCCCCeEEEECCC---ccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSG---NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G---~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++|.++|.|++   -+|..+|..|++.|.+|.+..|+.
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            4678999999974   489999999999999998877764

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=87.20  E-value=0.35  Score=39.22  Aligned_cols=38  Identities=29%  Similarity=0.278  Sum_probs=32.6

Q ss_pred             CCCCCCeEEEECC-CccHHHHHHHHhhccCceEEEeecC
Q 022090          182 KPYGGKNVLVVGS-GNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       182 ~~~~~~~v~ViG~-G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ....+++|+|.|+ |++|..++..|.+.|.+|..+.|+.
T Consensus         7 ~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~   45 (342)
T d1y1pa1           7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSA   45 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCc
Confidence            4445899999997 7899999999999999998877753

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=87.20  E-value=0.29  Score=36.68  Aligned_cols=36  Identities=28%  Similarity=0.252  Sum_probs=32.0

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEee
Q 022090          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR  217 (303)
Q Consensus       182 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r  217 (303)
                      ..+.+++|+|-|.|.+|..+|..|.+.|.+|++...
T Consensus        23 ~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~   58 (201)
T d1c1da1          23 GSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADT   58 (201)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecc
Confidence            357899999999999999999999999999986543

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=87.17  E-value=0.34  Score=36.20  Aligned_cols=35  Identities=11%  Similarity=0.067  Sum_probs=31.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .+.|.|||.|-.|-.+|..|...|.+|..+|+...
T Consensus        45 ~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          45 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ceeeeeeecccccccccccccccceeeeccCCccc
Confidence            46899999999999999999999999999998643

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=87.17  E-value=0.28  Score=36.52  Aligned_cols=38  Identities=16%  Similarity=0.194  Sum_probs=33.4

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       182 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ....++++.|||.|.+|-++|..+...|.+|....+..
T Consensus        45 ~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          45 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             eeeeCceEEEeccccccccceeeeeccccceeeccCcc
Confidence            45678999999999999999999999999998776654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=87.15  E-value=0.38  Score=34.89  Aligned_cols=33  Identities=12%  Similarity=0.159  Sum_probs=28.5

Q ss_pred             CcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            8 VEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         8 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      -.|+|+|+|..|++++..++..|. +|++++.++
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            469999999999999999999985 777777665

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=87.07  E-value=0.23  Score=37.19  Aligned_cols=37  Identities=22%  Similarity=0.136  Sum_probs=32.1

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeec
Q 022090          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS  218 (303)
Q Consensus       182 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~  218 (303)
                      ....+++|.|||-|.+|-++|..+...|.+|....+.
T Consensus        39 ~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~   75 (197)
T d1j4aa1          39 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF   75 (197)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccccCCeEEEecccccchhHHHhHhhhcccccccCcc
Confidence            3456899999999999999999999999999776544

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=87.06  E-value=0.31  Score=38.19  Aligned_cols=35  Identities=14%  Similarity=0.125  Sum_probs=29.9

Q ss_pred             CCcEEEECC-c--HHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGA-G--TSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGa-G--~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .+.++|.|| |  -.|.++|+.|+++|.+|++.++++.
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899996 3  4899999999999999999998753

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=87.02  E-value=0.23  Score=38.79  Aligned_cols=37  Identities=22%  Similarity=0.443  Sum_probs=33.0

Q ss_pred             CCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++|.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   43 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA   43 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3578999999986 599999999999999999999886

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.00  E-value=0.4  Score=37.03  Aligned_cols=38  Identities=29%  Similarity=0.332  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          182 KPYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       182 ~~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+.||.++|.|++ -+|.++|..|++.|.+|.+..|+.
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            44678999999986 599999999999999999998875

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=86.97  E-value=0.28  Score=38.23  Aligned_cols=37  Identities=24%  Similarity=0.229  Sum_probs=31.4

Q ss_pred             CCCCCeEEEECC-Cc--cHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGS-GN--SGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~-G~--~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++|+++|.|+ |.  +|..+|..|++.|.+|.+..|+.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            356899999995 43  89999999999999999988765

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=86.80  E-value=0.45  Score=34.32  Aligned_cols=38  Identities=24%  Similarity=0.327  Sum_probs=33.6

Q ss_pred             CCCCCCeEEEECCCc-cHHHHHHHHhhccCceEEEeecC
Q 022090          182 KPYGGKNVLVVGSGN-SGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       182 ~~~~~~~v~ViG~G~-~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ....+|+++|||.+. .|.-+|..|.+.|..||+++...
T Consensus        33 i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          33 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cccccceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            356799999999875 99999999999999999997766

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=86.55  E-value=0.38  Score=37.15  Aligned_cols=31  Identities=19%  Similarity=0.268  Sum_probs=25.7

Q ss_pred             EEEECC-cHHHHHHHHHHhhCCCCeEEEecCC
Q 022090           10 VIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus        10 vvIIGa-G~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      |+|-|| +-.|.++|+.|+++|.+|++.++++
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            455574 5589999999999999999999864

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.54  E-value=0.25  Score=38.40  Aligned_cols=36  Identities=19%  Similarity=0.262  Sum_probs=29.3

Q ss_pred             CCCcEEEECCc---HHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            6 AGVEVIMVGAG---TSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         6 ~~~~vvIIGaG---~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      +.+.++|.||+   -.|.++|++|+++|.+|++.++++.
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            34678888864   3799999999999999998887653

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.43  E-value=0.32  Score=36.65  Aligned_cols=32  Identities=22%  Similarity=0.195  Sum_probs=27.4

Q ss_pred             CCCcEEEEC-CcHHHHHHHHHHhhCCCCeEEEe
Q 022090            6 AGVEVIMVG-AGTSGLATAACLSLQSIPYVILE   37 (303)
Q Consensus         6 ~~~~vvIIG-aG~aGl~~A~~l~~~g~~v~iie   37 (303)
                      .+++|+|.| +|..|..++..|.+.|+++.+++
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            357899999 59999999999999998876654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=86.40  E-value=0.38  Score=37.41  Aligned_cols=33  Identities=30%  Similarity=0.361  Sum_probs=26.6

Q ss_pred             CcEEEE-CCc-HHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMV-GAG-TSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvII-GaG-~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ++|++| ||+ -.|.++|..|+++|.+|++.+++.
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            466554 654 589999999999999999999865

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.36  E-value=0.46  Score=34.46  Aligned_cols=33  Identities=27%  Similarity=0.382  Sum_probs=29.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~   39 (303)
                      .++|+|||=|.-|-+=|..|++.|++|+|==|.
T Consensus        16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~   48 (182)
T d1np3a2          16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRS   48 (182)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCT
T ss_pred             CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCC
Confidence            478999999999999999999999999886554

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.31  E-value=0.25  Score=43.02  Aligned_cols=34  Identities=21%  Similarity=0.403  Sum_probs=30.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      ..+|+|||+|..|..+|+.|...|+ +++|+|.+.
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            3689999999999999999999998 789998754

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.30  E-value=0.36  Score=38.60  Aligned_cols=33  Identities=15%  Similarity=0.257  Sum_probs=29.4

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHhhCCCCeEEEecC
Q 022090            7 GVEVIMVG-AGTSGLATAACLSLQSIPYVILERE   39 (303)
Q Consensus         7 ~~~vvIIG-aG~aGl~~A~~l~~~g~~v~iie~~   39 (303)
                      +++|+|.| +|..|..++..|.++|++|+.+++.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            46899999 5899999999999999999999863

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.28  E-value=0.28  Score=35.48  Aligned_cols=36  Identities=31%  Similarity=0.296  Sum_probs=30.5

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecC
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~  219 (303)
                      ..+++|+|+|+|.+|.-++..+...|. +|.++.+++
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            346899999999999999999988897 688877665

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.22  E-value=0.38  Score=36.96  Aligned_cols=38  Identities=32%  Similarity=0.521  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          182 KPYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       182 ~~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+++|.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~   41 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS   41 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            34678999999986 599999999999999999999876

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.19  E-value=0.16  Score=36.43  Aligned_cols=25  Identities=20%  Similarity=0.294  Sum_probs=21.2

Q ss_pred             CCCcEEEECC-cHHHHHHHHHHhhCC
Q 022090            6 AGVEVIMVGA-GTSGLATAACLSLQS   30 (303)
Q Consensus         6 ~~~~vvIIGa-G~aGl~~A~~l~~~g   30 (303)
                      ++.+|+|||| |..|.++|..|...+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~   27 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGS   27 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTT
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHH
Confidence            3569999996 999999999998653

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=86.14  E-value=0.37  Score=38.24  Aligned_cols=38  Identities=18%  Similarity=0.316  Sum_probs=33.8

Q ss_pred             CCCCCCeEEEECC-CccHHHHHHHHhhccCceEEEeecC
Q 022090          182 KPYGGKNVLVVGS-GNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       182 ~~~~~~~v~ViG~-G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+++|.++|.|+ +-+|..+|..|++.|.+|.+..|+.
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4577899999995 6899999999999999999999876

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=86.05  E-value=0.42  Score=37.27  Aligned_cols=37  Identities=35%  Similarity=0.552  Sum_probs=32.6

Q ss_pred             CCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++|.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3578999999985 599999999999999999998875

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=85.92  E-value=0.35  Score=37.67  Aligned_cols=35  Identities=14%  Similarity=0.188  Sum_probs=28.8

Q ss_pred             CCCcEEEECC-cH--HHHHHHHHHhhCCCCeEEEecCC
Q 022090            6 AGVEVIMVGA-GT--SGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         6 ~~~~vvIIGa-G~--aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ..+.++|.|| |-  .|.++|+.|+++|.+|++.+++.
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            3567889985 44  78999999999999999988754

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=85.90  E-value=0.44  Score=35.49  Aligned_cols=34  Identities=15%  Similarity=0.064  Sum_probs=31.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+.|.|||-|-.|-.+|..|...|.+|..+|+..
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~   76 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR   76 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence            4689999999999999999999999999998654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.83  E-value=0.22  Score=37.39  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=29.5

Q ss_pred             CCeEEEECC-CccHHHHHHHHhhccC--ceEEEeecCe
Q 022090          186 GKNVLVVGS-GNSGMEIALDLANHAA--KTSLVVRSPV  220 (303)
Q Consensus       186 ~~~v~ViG~-G~~g~e~a~~l~~~g~--~vt~~~r~~~  220 (303)
                      +|+|+|.|+ |.+|-.++..|.+.+.  +|+...|++.
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~   39 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL   39 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCch
Confidence            689999998 9999999999999986  5666666653

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.76  E-value=0.43  Score=34.53  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=28.9

Q ss_pred             CCcEEEECC-cHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGa-G~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ...|+|+|| |..|+.+..-++..|.+|+.+..++
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeccccccccccccccccCcccccccccc
Confidence            347999996 9999999999989999998887654

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=85.60  E-value=0.36  Score=37.60  Aligned_cols=37  Identities=32%  Similarity=0.507  Sum_probs=32.4

Q ss_pred             CCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+.+|.++|.|++ -+|.++|..|++.|.+|.+..++.
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~   40 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSS   40 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            4678999999985 599999999999999999877765

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.56  E-value=0.91  Score=31.77  Aligned_cols=38  Identities=24%  Similarity=0.295  Sum_probs=29.7

Q ss_pred             CCcEEEECC-cHHHHHHHHHHhhCC---CCeEEEecCCCCCC
Q 022090            7 GVEVIMVGA-GTSGLATAACLSLQS---IPYVILERENCYAS   44 (303)
Q Consensus         7 ~~~vvIIGa-G~aGl~~A~~l~~~g---~~v~iie~~~~~gg   44 (303)
                      +.+|+|||| |+.|..+.+-|.+++   .++..+-.+...|-
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk   43 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ   43 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCc
Confidence            368999998 999999999997654   47777766665554

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.47  E-value=0.53  Score=33.85  Aligned_cols=34  Identities=18%  Similarity=0.186  Sum_probs=28.4

Q ss_pred             CCcEEEECC-cHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090            7 GVEVIMVGA-GTSGLATAACLSLQSI-PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGa-G~aGl~~A~~l~~~g~-~v~iie~~~   40 (303)
                      .-+|+|+|+ |+.|+.++..++..|. +|+++++++
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccch
Confidence            357999994 9999999999998885 788888764

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=85.44  E-value=0.24  Score=38.74  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=28.8

Q ss_pred             CCcEEEECCcH-HHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGT-SGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~-aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .+.++|.||+- .|.++|+.|+++|.+|++.+++..
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45677777654 789999999999999999998763

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.38  E-value=0.57  Score=33.94  Aligned_cols=38  Identities=21%  Similarity=0.246  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          182 KPYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       182 ~~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+.+++++|||.+ ..|.-+|..|.+.|..|++++...
T Consensus        35 i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t   73 (170)
T d1a4ia1          35 VPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT   73 (170)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             cccccceEEEEecCCccchHHHHHHHhccCceEEEeccc
Confidence            45689999999986 599999999999999999998776

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=85.35  E-value=0.5  Score=33.64  Aligned_cols=36  Identities=25%  Similarity=0.163  Sum_probs=28.7

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhcc-CceEEEeecC
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g-~~vt~~~r~~  219 (303)
                      .+.++|+|||+|.+|.-+|..++..+ .++.++...+
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            34689999999999999998888776 3677776554

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=85.31  E-value=0.54  Score=34.64  Aligned_cols=38  Identities=18%  Similarity=0.174  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       182 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ....++++.|||.|.+|.++|..+...|.+|....|..
T Consensus        40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          40 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             eeccccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence            45678999999999999999999999999998887654

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.31  E-value=0.45  Score=37.92  Aligned_cols=34  Identities=18%  Similarity=0.121  Sum_probs=30.3

Q ss_pred             CcEEEECC-cHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            8 VEVIMVGA-GTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         8 ~~vvIIGa-G~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      ++|+|.|| |..|-.++..|.++|++|..+++...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            47999995 99999999999999999999998654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.24  E-value=0.28  Score=35.43  Aligned_cols=33  Identities=33%  Similarity=0.326  Sum_probs=27.3

Q ss_pred             CeEEEECCCccHHHHHHHHhhccC--ceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAA--KTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~--~vt~~~r~~  219 (303)
                      ++|.|||.|..|.-+|..|.+.|.  +|+.+.+++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            479999999999999999999885  466666654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.15  E-value=0.49  Score=36.49  Aligned_cols=37  Identities=30%  Similarity=0.417  Sum_probs=33.0

Q ss_pred             CCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++|.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4679999999985 699999999999999999998875

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=85.12  E-value=0.4  Score=37.14  Aligned_cols=35  Identities=9%  Similarity=0.220  Sum_probs=29.0

Q ss_pred             CCcEEEECCcH---HHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGT---SGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~---aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .+.++|.||+-   -|.++|..|++.|.+|++.++++.
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            46788888754   678999999999999999988754

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.08  E-value=0.49  Score=36.39  Aligned_cols=37  Identities=19%  Similarity=0.253  Sum_probs=33.1

Q ss_pred             CCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++|.++|.|++ -+|..+|..|++.|.+|.++.|+.
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~   39 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPN   39 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3678999999986 599999999999999999999876

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=85.02  E-value=0.46  Score=32.18  Aligned_cols=38  Identities=24%  Similarity=0.380  Sum_probs=31.9

Q ss_pred             CCeEEEECCCc-----------cHHHHHHHHhhccCceEEEeecCeeee
Q 022090          186 GKNVLVVGSGN-----------SGMEIALDLANHAAKTSLVVRSPVHVL  223 (303)
Q Consensus       186 ~~~v~ViG~G~-----------~g~e~a~~l~~~g~~vt~~~r~~~~~l  223 (303)
                      .++|+|+|+|+           +++.++..|.+.|.++.++.-+|..+.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVs   52 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVS   52 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSST
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhh
Confidence            47899999985           688889999999999999988775443

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.97  E-value=0.47  Score=36.29  Aligned_cols=36  Identities=25%  Similarity=0.358  Sum_probs=32.1

Q ss_pred             CCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++|.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            468999999985 699999999999999999998874

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=84.87  E-value=0.44  Score=38.52  Aligned_cols=32  Identities=25%  Similarity=0.315  Sum_probs=28.7

Q ss_pred             cEEEEC-CcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMVG-AGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvIIG-aG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +|+|+| +|..|-.++..|.+.|++|+++|+-.
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~   34 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLC   34 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            699998 59999999999999999999998643

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.87  E-value=0.31  Score=34.56  Aligned_cols=35  Identities=29%  Similarity=0.518  Sum_probs=28.8

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhcc--CceEEEeecC
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g--~~vt~~~r~~  219 (303)
                      .+++|.|||+|.+|.-+|..|...+  .++.++.+.+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            3579999999999999999999875  4677776554

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=84.78  E-value=0.48  Score=36.82  Aligned_cols=37  Identities=24%  Similarity=0.305  Sum_probs=32.9

Q ss_pred             CCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++|.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3678999999986 699999999999999999998875

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.69  E-value=0.29  Score=34.75  Aligned_cols=32  Identities=16%  Similarity=0.211  Sum_probs=29.2

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|.|||.|..|.-+|..|.+.|.+|++..+.+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            68999999999999999999999998887665

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.67  E-value=0.44  Score=34.14  Aligned_cols=36  Identities=17%  Similarity=0.051  Sum_probs=31.0

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ..+++|+|.|+|.+|.=++..+...|.+|+.+.+++
T Consensus        26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            357899999999999998888888899988887665

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=84.67  E-value=0.58  Score=34.71  Aligned_cols=34  Identities=18%  Similarity=0.179  Sum_probs=31.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+.|.|||.|-.|-.+|..|...|.+|..+++..
T Consensus        49 gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          49 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             CceEEEeccccccccceeeeeccccceeeccCcc
Confidence            4689999999999999999999999999998754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=84.55  E-value=0.31  Score=33.49  Aligned_cols=31  Identities=19%  Similarity=0.246  Sum_probs=26.1

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .|+|+|.|..|..++..|.  +.++.++|.++.
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            5899999999999999995  456788887653

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=84.50  E-value=0.38  Score=33.96  Aligned_cols=33  Identities=18%  Similarity=0.363  Sum_probs=27.0

Q ss_pred             CeEEEECCCccHHHHHHHHhhcc--CceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g--~~vt~~~r~~  219 (303)
                      |+|.|||+|.+|..+|..|...+  .++.++....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            78999999999999999999876  4677765543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=84.45  E-value=0.46  Score=34.18  Aligned_cols=37  Identities=27%  Similarity=0.110  Sum_probs=31.3

Q ss_pred             CCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ...+++|+|+|+|.+|.-++..+...|.++.++.+++
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            3457999999999999988888888899888777766

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=84.36  E-value=0.29  Score=34.91  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=21.3

Q ss_pred             CCcEEEECC-cHHHHHHHHHHhhCC
Q 022090            7 GVEVIMVGA-GTSGLATAACLSLQS   30 (303)
Q Consensus         7 ~~~vvIIGa-G~aGl~~A~~l~~~g   30 (303)
                      +.+|.|||| |..|.++|..|...+
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcc
Confidence            459999997 999999999998764

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=84.36  E-value=0.54  Score=36.57  Aligned_cols=36  Identities=28%  Similarity=0.371  Sum_probs=32.4

Q ss_pred             CCCCeEEEECC-CccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGS-GNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~-G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++|.++|.|+ +-+|.++|..|++.|.+|.+..|++
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999996 4699999999999999999999875

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=84.31  E-value=0.69  Score=37.34  Aligned_cols=35  Identities=17%  Similarity=0.110  Sum_probs=29.6

Q ss_pred             CCCCcEEEEC-CcHHHHHHHHHHhhCCCCeEEEecC
Q 022090            5 AAGVEVIMVG-AGTSGLATAACLSLQSIPYVILERE   39 (303)
Q Consensus         5 ~~~~~vvIIG-aG~aGl~~A~~l~~~g~~v~iie~~   39 (303)
                      +..+.|+|.| +|..|..++..|.++|++|..+.|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~   44 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            3457999999 5889999999999999999776554

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.28  E-value=0.53  Score=36.22  Aligned_cols=36  Identities=31%  Similarity=0.470  Sum_probs=32.3

Q ss_pred             CCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++|.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            678999999975 699999999999999999998875

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.27  E-value=0.59  Score=35.96  Aligned_cols=36  Identities=19%  Similarity=0.165  Sum_probs=32.0

Q ss_pred             CCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++|.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            568999999975 699999999999999999998875

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=84.26  E-value=0.29  Score=34.84  Aligned_cols=32  Identities=16%  Similarity=0.183  Sum_probs=29.2

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ++.+||.|..|.-++..|.+.+.++++..|++
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            58999999999999999999999999988775

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=84.11  E-value=0.65  Score=34.21  Aligned_cols=34  Identities=26%  Similarity=0.271  Sum_probs=31.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ...|.|||.|-.|...|..|...|.+|..+++..
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             ccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence            5689999999999999999999999999999864

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=84.01  E-value=0.3  Score=35.57  Aligned_cols=32  Identities=34%  Similarity=0.477  Sum_probs=29.4

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|.|||.|..|.-+|..|.+.|.+|+++.|++
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            58899999999999999999999999987765

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=83.88  E-value=0.39  Score=33.79  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=27.5

Q ss_pred             CCeEEEECCCccHHHHHHHHhhcc--CceEEEeecC
Q 022090          186 GKNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP  219 (303)
Q Consensus       186 ~~~v~ViG~G~~g~e~a~~l~~~g--~~vt~~~r~~  219 (303)
                      |.+|.|||+|.+|.-+|..+...+  .++.++...+
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            468999999999999999998775  4677766554

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.65  E-value=0.65  Score=34.53  Aligned_cols=30  Identities=17%  Similarity=0.222  Sum_probs=25.6

Q ss_pred             CCcEEEECC-cHHHHHHHHHHhhCCCCeEEE
Q 022090            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVIL   36 (303)
Q Consensus         7 ~~~vvIIGa-G~aGl~~A~~l~~~g~~v~ii   36 (303)
                      +++|+|.|| |..|-.++..|.+.|..+.++
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~   32 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVI   32 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEE
Confidence            479999999 999999999999999744333

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.58  E-value=0.61  Score=36.08  Aligned_cols=36  Identities=28%  Similarity=0.394  Sum_probs=32.2

Q ss_pred             CCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++|.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            568999999985 599999999999999999998875

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.55  E-value=0.53  Score=34.03  Aligned_cols=34  Identities=18%  Similarity=0.248  Sum_probs=28.5

Q ss_pred             CCcEEEECC-cHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGa-G~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ...|+|.|| |+.|+.+..-++..|.+|+.+++++
T Consensus        28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          28 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCEEEEEeccccchhhhhhhhcccccccccccccc
Confidence            346888896 9999999998888999998887654

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=83.54  E-value=0.47  Score=33.30  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=27.6

Q ss_pred             CeEEEECCCccHHHHHHHHhhcc--CceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g--~~vt~~~r~~  219 (303)
                      ++|.|||+|.+|..+|..+...+  .++.++.+.+
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            57999999999999999998875  4788887666

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=83.47  E-value=0.6  Score=33.85  Aligned_cols=34  Identities=15%  Similarity=0.296  Sum_probs=24.5

Q ss_pred             CCcEEEECCcHHHHHHHH--HHhhC----CCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAA--CLSLQ----SIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~--~l~~~----g~~v~iie~~~   40 (303)
                      ..+|+|||||..|.+.+.  .|...    +.+++++|.+.
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~   41 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE   41 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc
Confidence            468999999999977544  23322    35899999865

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.40  E-value=0.54  Score=35.80  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=27.7

Q ss_pred             CcEEEECC-cHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            8 VEVIMVGA-GTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         8 ~~vvIIGa-G~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      +.++|-|| +-.|.++|..|+++|.+|++.+++..
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            34566665 67788999999999999999998764

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.31  E-value=0.73  Score=37.14  Aligned_cols=33  Identities=24%  Similarity=0.243  Sum_probs=29.6

Q ss_pred             CcEEEEC-CcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVG-AGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIG-aG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ++|+|.| +|..|-.++..|.+.|++|+.+|+-.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~   36 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFH   36 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4899998 69999999999999999999998643

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.99  E-value=0.46  Score=36.65  Aligned_cols=36  Identities=22%  Similarity=0.268  Sum_probs=31.9

Q ss_pred             CCCCeEEEECC-CccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGS-GNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~-G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++|.++|.|+ +-+|..+|..|++.|.+|.+..|++
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            66888888886 5899999999999999999999875

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=82.97  E-value=0.46  Score=37.02  Aligned_cols=36  Identities=33%  Similarity=0.331  Sum_probs=31.3

Q ss_pred             CCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++|.++|.|++ -+|..+|..|++.|.+|.+..|++
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            467888888875 599999999999999999999876

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.87  E-value=0.57  Score=35.93  Aligned_cols=35  Identities=23%  Similarity=0.285  Sum_probs=29.0

Q ss_pred             CCcEEEECCc-HHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAG-TSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG-~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .+.++|-||+ -.|.++|..|++.|.+|++.+++..
T Consensus         7 gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            4567777765 4889999999999999999998764

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=82.61  E-value=0.7  Score=35.90  Aligned_cols=37  Identities=27%  Similarity=0.320  Sum_probs=32.6

Q ss_pred             CCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++|.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3578999999986 599999999999999999998875

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=82.60  E-value=0.47  Score=36.59  Aligned_cols=35  Identities=26%  Similarity=0.312  Sum_probs=29.8

Q ss_pred             CCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeec
Q 022090          184 YGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRS  218 (303)
Q Consensus       184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~  218 (303)
                      ++.++|+|||.|.+|.++|..|++.|. +++++...
T Consensus        28 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          28 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            456899999999999999999999996 57777543

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.59  E-value=0.58  Score=35.54  Aligned_cols=35  Identities=23%  Similarity=0.488  Sum_probs=30.8

Q ss_pred             CCCeEEEECC-CccHHHHHHHHhhccC--ceEEEeecC
Q 022090          185 GGKNVLVVGS-GNSGMEIALDLANHAA--KTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~-G~~g~e~a~~l~~~g~--~vt~~~r~~  219 (303)
                      ..++|+|.|+ |.+|-.++..|.+.|.  +|+++.|++
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~   50 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK   50 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecCh
Confidence            3578999997 9999999999999884  899999976

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.58  E-value=0.67  Score=35.40  Aligned_cols=35  Identities=14%  Similarity=0.085  Sum_probs=30.7

Q ss_pred             CCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          185 GGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ++|+++|.|++ -+|..+|..|++.|.+|.++.+..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            47899999984 699999999999999999887754

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.42  E-value=0.61  Score=35.96  Aligned_cols=37  Identities=22%  Similarity=0.171  Sum_probs=32.4

Q ss_pred             CCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++|.++|-|++ -+|..+|..|++.|.+|.+..|++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3568999999985 699999999999999999998875

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.35  E-value=0.58  Score=36.34  Aligned_cols=37  Identities=22%  Similarity=0.296  Sum_probs=32.5

Q ss_pred             CCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++|.++|.|++ -+|.++|..|++.|.+|.+..|+.
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3678999999975 799999999999999999988764

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=82.30  E-value=0.65  Score=35.84  Aligned_cols=36  Identities=36%  Similarity=0.500  Sum_probs=32.3

Q ss_pred             CCCCeEEEECC-CccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGS-GNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~-G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++|.++|.|+ +-+|.++|..|++.|.+|.+..|++
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~   39 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP   39 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999996 5799999999999999999998876

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.21  E-value=0.52  Score=36.96  Aligned_cols=37  Identities=27%  Similarity=0.440  Sum_probs=32.5

Q ss_pred             CCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++|.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3678999999975 699999999999999999998875

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.10  E-value=0.52  Score=36.84  Aligned_cols=34  Identities=29%  Similarity=0.352  Sum_probs=28.7

Q ss_pred             CCcEEEECCcH-HHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGT-SGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~-aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+.++|.||+- .|.++|+.|+++|.+|++.+|+.
T Consensus        14 GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          14 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35688888665 79999999999999999999865

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.08  E-value=0.72  Score=35.48  Aligned_cols=32  Identities=19%  Similarity=0.264  Sum_probs=26.7

Q ss_pred             cEEEE--CCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            9 EVIMV--GAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         9 ~vvII--GaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ++++|  |++-.|.++|+.|+++|.+|++.++++
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            45555  567789999999999999999999864

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=81.95  E-value=1.2  Score=28.75  Aligned_cols=37  Identities=22%  Similarity=0.106  Sum_probs=31.0

Q ss_pred             CCCCCeEEEECCCccHHHH-HHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSGNSGMEI-ALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G~~g~e~-a~~l~~~g~~vt~~~r~~  219 (303)
                      ....+++.+||-|-+|+-. |..|+++|.+|+-..+..
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            3456899999999998776 999999999999887664

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=81.90  E-value=0.85  Score=35.10  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=32.5

Q ss_pred             CCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++|.++|.|++ -+|..+|..|++.|.+|.+..|++
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            3578999999985 699999999999999999998876

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=81.78  E-value=0.43  Score=33.75  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=28.1

Q ss_pred             eEEEECCCccHHHHHHHHhhcc-CceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g-~~vt~~~r~~  219 (303)
                      +|.+||.|..|--++..|.+.+ .+|+++.|++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            5899999999999999888887 7898888876

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=81.78  E-value=0.73  Score=35.78  Aligned_cols=34  Identities=32%  Similarity=0.478  Sum_probs=28.0

Q ss_pred             CCcEEEECCc-HHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAG-TSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG-~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+.++|.||+ -.|.++|..|+++|.+|++.+++.
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4567777864 478899999999999999999864

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.76  E-value=0.95  Score=33.23  Aligned_cols=34  Identities=18%  Similarity=0.213  Sum_probs=31.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      ...|.|||.|..|-..|..|...|.+|..+++..
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN   77 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ceEEEEeecccchhhhhhhcccccceEeeccccc
Confidence            4689999999999999999999999999999754

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=81.75  E-value=0.66  Score=35.36  Aligned_cols=34  Identities=18%  Similarity=0.218  Sum_probs=28.9

Q ss_pred             CcEEEECC-cHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090            8 VEVIMVGA-GTSGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         8 ~~vvIIGa-G~aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .+|+|.|| |-.|.++|..|+++|++|++++++..
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            47899985 56789999999999999999998753

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=81.72  E-value=0.69  Score=37.67  Aligned_cols=33  Identities=18%  Similarity=0.201  Sum_probs=28.2

Q ss_pred             CcEEEEC-CcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            8 VEVIMVG-AGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         8 ~~vvIIG-aG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      +.|+|.| +|..|-.++..|.+.|++|+.+++..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4566888 89999999999999999999999854

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=81.62  E-value=0.59  Score=32.67  Aligned_cols=32  Identities=28%  Similarity=0.427  Sum_probs=27.5

Q ss_pred             eEEEECCCccHHHHHHHHhhcc--CceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g--~~vt~~~r~~  219 (303)
                      +|.|||+|.+|.-+|..|+..+  .++.++...+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            5899999999999999999876  5788887666

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=81.59  E-value=0.89  Score=35.24  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=29.2

Q ss_pred             CCcEEEECC-cHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGa-G~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+.++|.|| +-.|.++|..|+++|.+|++.+++.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            467899994 5578999999999999999999875

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=81.58  E-value=0.72  Score=36.00  Aligned_cols=37  Identities=16%  Similarity=0.135  Sum_probs=32.3

Q ss_pred             CCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++|.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3678999999975 699999999999999999998865

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.57  E-value=0.61  Score=36.27  Aligned_cols=37  Identities=27%  Similarity=0.336  Sum_probs=32.5

Q ss_pred             CCCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      .+++|.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3578999999985 599999999999999999998875

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.54  E-value=0.74  Score=33.85  Aligned_cols=37  Identities=14%  Similarity=0.178  Sum_probs=32.9

Q ss_pred             CCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      ...++++.|||.|.+|-++|..+...|.+|....+..
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d1sc6a1          41 EARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN   77 (188)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccceEEEEeecccchhhhhhhcccccceEeeccccc
Confidence            4568999999999999999999999999998887654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.51  E-value=0.64  Score=39.08  Aligned_cols=34  Identities=26%  Similarity=0.368  Sum_probs=29.3

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccC-ceEEEeec
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRS  218 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~  218 (303)
                      +..+|+|||.|.+|+|++..|+..|. +++++...
T Consensus        36 ~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          36 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             hcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            35789999999999999999999986 68887554

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=81.42  E-value=0.63  Score=32.54  Aligned_cols=33  Identities=24%  Similarity=0.250  Sum_probs=26.2

Q ss_pred             CeEEEECCCccHHHHHHHHhhccC-ceEEEeecC
Q 022090          187 KNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~  219 (303)
                      ++|.|||+|.+|..+|..|+..+. ++.++....
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            589999999999999999887753 566665444

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=81.35  E-value=1.1  Score=32.08  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=27.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCC-eEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~~   40 (303)
                      .-.|+|+|+|..|+.++..++..|.+ |++.++++
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            34699999999999999999999975 55555543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.10  E-value=0.96  Score=34.68  Aligned_cols=34  Identities=24%  Similarity=0.254  Sum_probs=28.4

Q ss_pred             CCcEEEECC-cHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGa-G~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+.++|-|| +-.|.++|..|+++|.+|++.+++.
T Consensus         5 gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            456777776 4589999999999999999999864

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=81.05  E-value=0.49  Score=37.72  Aligned_cols=34  Identities=18%  Similarity=0.323  Sum_probs=27.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC----CC-------CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ----SI-------PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~----g~-------~v~iie~~~   40 (303)
                      ..+|+|.|+|.+|+.+|..|...    |.       ++.++|+.-
T Consensus        25 d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~G   69 (308)
T d1o0sa1          25 QEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDG   69 (308)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTE
T ss_pred             HcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCC
Confidence            35899999999999999988654    42       599999754

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.03  E-value=0.83  Score=35.05  Aligned_cols=34  Identities=29%  Similarity=0.454  Sum_probs=28.7

Q ss_pred             CCcEEEECCc-HHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAG-TSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG-~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+.++|.||+ -.|.++|..|+++|.+|++.+++.
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4678888864 578999999999999999998864

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=80.88  E-value=0.85  Score=34.96  Aligned_cols=34  Identities=24%  Similarity=0.440  Sum_probs=28.7

Q ss_pred             CCcEEEECCcH-HHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGT-SGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~-aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+.++|.||+- .|.++|..|+++|++|++.+++.
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45677778765 89999999999999999998865

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.87  E-value=0.66  Score=36.88  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=29.9

Q ss_pred             CeEEEECC-CccHHHHHHHHhhccCceEEEeecC
Q 022090          187 KNVLVVGS-GNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       187 ~~v~ViG~-G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      |+|+|.|+ |.+|-.++..|.+.|.+|+.+.|..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            68999997 8999999999999999999988864

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=80.79  E-value=0.86  Score=33.12  Aligned_cols=23  Identities=22%  Similarity=0.104  Sum_probs=20.2

Q ss_pred             CCcEEEECC-cHHHHHHHHHHhhC
Q 022090            7 GVEVIMVGA-GTSGLATAACLSLQ   29 (303)
Q Consensus         7 ~~~vvIIGa-G~aGl~~A~~l~~~   29 (303)
                      ..+|+|+|| |..|.++|..|+..
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g   47 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASG   47 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcC
Confidence            358999996 99999999999875

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.68  E-value=1  Score=34.26  Aligned_cols=34  Identities=26%  Similarity=0.280  Sum_probs=29.3

Q ss_pred             CCcEEEECC-cHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGA-GTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGa-G~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+.++|.|| +-.|.++|..|++.|.+|++.+++.
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            467899996 5589999999999999999999864

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.65  E-value=0.39  Score=38.08  Aligned_cols=34  Identities=15%  Similarity=0.403  Sum_probs=27.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhC----CC-------CeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQ----SI-------PYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~----g~-------~v~iie~~~   40 (303)
                      ..+|+|.|+|.+|+.+|..|...    |.       ++.++|+.-
T Consensus        25 d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~G   69 (294)
T d1pj3a1          25 EHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYG   69 (294)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTE
T ss_pred             HcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCC
Confidence            35899999999999999987654    43       699999854

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=80.63  E-value=1  Score=32.13  Aligned_cols=35  Identities=26%  Similarity=0.380  Sum_probs=29.2

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhccC--ceEEEeecC
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHAA--KTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g~--~vt~~~r~~  219 (303)
                      ...+|.|||+|.+|..+|..|...+.  ++.++.+.+
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            35799999999999999999998864  677776654

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.63  E-value=0.9  Score=34.81  Aligned_cols=35  Identities=34%  Similarity=0.459  Sum_probs=27.9

Q ss_pred             CCcEEEECCcH-HHHHHHHHHhhCCCCeEEEecCCC
Q 022090            7 GVEVIMVGAGT-SGLATAACLSLQSIPYVILERENC   41 (303)
Q Consensus         7 ~~~vvIIGaG~-aGl~~A~~l~~~g~~v~iie~~~~   41 (303)
                      .+-++|.||+- .|.++|.+|+++|++|++.+++..
T Consensus         5 GKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           5 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            34566777543 788999999999999999998763

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.58  E-value=0.76  Score=37.84  Aligned_cols=30  Identities=33%  Similarity=0.495  Sum_probs=27.8

Q ss_pred             CcEEEEC-CcHHHHHHHHHHhhCCCCeEEEe
Q 022090            8 VEVIMVG-AGTSGLATAACLSLQSIPYVILE   37 (303)
Q Consensus         8 ~~vvIIG-aG~aGl~~A~~l~~~g~~v~iie   37 (303)
                      ++|+|.| +|..|-.++..|.+.|++|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            5799998 58999999999999999999997

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=80.50  E-value=0.92  Score=32.10  Aligned_cols=36  Identities=22%  Similarity=0.265  Sum_probs=26.9

Q ss_pred             CcEEEECC-cHHHHHHHHHHhhCCC---CeEEEecCCCCC
Q 022090            8 VEVIMVGA-GTSGLATAACLSLQSI---PYVILERENCYA   43 (303)
Q Consensus         8 ~~vvIIGa-G~aGl~~A~~l~~~g~---~v~iie~~~~~g   43 (303)
                      ++|+|||| |+.|..+.+-|.++.+   ++..+..+...|
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G   41 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAG   41 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccc
Confidence            68999998 9999999999988865   344454444333

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=80.33  E-value=0.56  Score=34.64  Aligned_cols=31  Identities=26%  Similarity=0.449  Sum_probs=26.3

Q ss_pred             eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090          188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +|.|||.|+.|.-+|..++ .|.+|+.+.-.+
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            5899999999999998886 599998876554

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.31  E-value=0.89  Score=35.07  Aligned_cols=34  Identities=21%  Similarity=0.286  Sum_probs=28.2

Q ss_pred             CCcEEEECCc-HHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAG-TSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG-~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+.++|-||+ -.|.++|..|+++|.+|++.+++.
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3567888864 478899999999999999999864

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=80.25  E-value=0.53  Score=33.44  Aligned_cols=30  Identities=23%  Similarity=0.386  Sum_probs=25.2

Q ss_pred             cEEEECCcHHHHHHHHHHhhCCCCeEEEecC
Q 022090            9 EVIMVGAGTSGLATAACLSLQSIPYVILERE   39 (303)
Q Consensus         9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~   39 (303)
                      +|.+||-|..|...|.+|.+.|+.+ ++.+.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~   31 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRT   31 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCC
Confidence            6899999999999999999988755 45444

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=80.22  E-value=0.62  Score=33.78  Aligned_cols=37  Identities=24%  Similarity=0.215  Sum_probs=30.6

Q ss_pred             CCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecC
Q 022090          183 PYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP  219 (303)
Q Consensus       183 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~  219 (303)
                      ...+++|+|+|+|.+|.-++..+...|. +|+.+.+++
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            3457899999999999999999998886 587776654

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=80.21  E-value=0.8  Score=35.91  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=32.5

Q ss_pred             CCCCeEEEECC-CccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGS-GNSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~-G~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++|.++|-|+ +-+|..+|..|++.|.+|.++.|+.
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56899999997 5899999999999999999998875

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.04  E-value=1.1  Score=31.87  Aligned_cols=35  Identities=26%  Similarity=0.380  Sum_probs=28.5

Q ss_pred             CCCeEEEECCCccHHHHHHHHhhcc--CceEEEeecC
Q 022090          185 GGKNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP  219 (303)
Q Consensus       185 ~~~~v~ViG~G~~g~e~a~~l~~~g--~~vt~~~r~~  219 (303)
                      ...+|.|||+|.+|.-+|..|...+  .++.++.+.+
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            3458999999999999999999885  4687776554

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.03  E-value=1.1  Score=32.88  Aligned_cols=34  Identities=24%  Similarity=0.174  Sum_probs=30.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090            7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN   40 (303)
Q Consensus         7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~   40 (303)
                      .+.+.|||.|..|-..|..|...|.+|..+++..
T Consensus        44 ~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~   77 (184)
T d1ygya1          44 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV   77 (184)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             ceeeeeccccchhHHHHHHhhhccceEEeecCCC
Confidence            4689999999999999999999999999998754

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=80.01  E-value=0.88  Score=35.28  Aligned_cols=36  Identities=39%  Similarity=0.499  Sum_probs=32.1

Q ss_pred             CCCCeEEEECCC-ccHHHHHHHHhhccCceEEEeecC
Q 022090          184 YGGKNVLVVGSG-NSGMEIALDLANHAAKTSLVVRSP  219 (303)
Q Consensus       184 ~~~~~v~ViG~G-~~g~e~a~~l~~~g~~vt~~~r~~  219 (303)
                      +++|.++|.|++ -+|..+|..|++.|.+|.+..|+.
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            568899999986 699999999999999999998875