Citrus Sinensis ID: 022093

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MMFSVRLSTLILGTQMADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI
Secondary Structure (PSIPRED)
ccEEEEHHHHHHHcccccHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHcccEEEEEcccccEEEccccccccccccccEEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEEEEcHcHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEEcccccEEEccEEcccccccccccEEEEEEHHcccccccccccccc
Coil and Loop (DISEMBL)
MMFSVRLSTLILGtqmadtqeieetpseahsgdasqkKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASlgysssngneksnLDNLVKAVAGVTVisqhdqakpskgtkRREKRAQQEAAREQRIQEEQSNivsdrtvedeklekklgplgltvndikpdghclYRAVEDQlahlsggeesAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHImiysgsfpdvemgkeysnggsdssgsSIILSYHRhafglgehynsvipi
Flexible Loop (DISEMBL)
MMFSVRLSTLILGTQMADTQEIEetpseahsgdasqkkQETRDEMLSRHRkeisqlqnkETELKKaaakgskaeqkakkkqVEEEISRLSAKLREKHAKELAslgysssngneKSNLDNLVKAVAGVTVisqhdqakpskgtkrrEKRAQQEAAreqriqeeqsnivsdrtvedeklekklgplgltvndikPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFglgehynsvipi
Low Complexity Region (SEG)
MMFSVRLSTLILGTQMADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETelkkaaakgskaeqkakkkqveeeISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKrrekraqqeaareqriqeeqSNIVSDRTVEDeklekklgplglTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYsnggsdssgssIILSYHRHAFGLGEHYNSVIPI
Disordered region (IsUnstruct)
**********I************************************************************************************************************LVKAVAGVTVI****************************************************PLGLTVNDIKPDGHCLYRAVEDQLAH*************RFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD******************IILSYHRHAFGLGEHYN*****
Disordered Region (DISOPRED)
***SVR*STLI******************************************************************************************************************************************************************DEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMG*********SSGSSIILSYHRHAFGLGEHYNSVIPI
Disordered Region (DISEMBL)
MMFSVRLSTLILGTQMAD********************************************************************SRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVIS****************************QEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAH*************RFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKE*********GSSIILSYHRHAFGLGEHYNSVIPI
Disordered Region (DISPRO)
*MFSVRLSTLILGTQMAD************************DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGY****************************************************IQ****NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMFSVRLSTLILGTQMADTQEIEETPSEAHSGDASQKKQETRDEMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q7ZV00	293	OTU domain-containing pro	yes	no	0.807	0.832	0.361	5e-35
Q5ZIP6	302	OTU domain-containing pro	yes	no	0.801	0.801	0.354	8e-35
Q6GM06	294	OTU domain-containing pro	N/A	no	0.794	0.816	0.344	4e-34
Q8N6M0	293	OTU domain-containing pro	yes	no	0.778	0.802	0.355	4e-34
Q5M8L0	294	OTU domain-containing pro	yes	no	0.788	0.809	0.335	8e-34
Q8K2H2	294	OTU domain-containing pro	yes	no	0.798	0.819	0.328	6e-31
Q6IE21	290	OTU domain-containing pro	no	no	0.791	0.824	0.308	3e-30
Q7L8S5	288	OTU domain-containing pro	no	no	0.778	0.815	0.309	3e-27
Q9UUK3	324	Ubiquitin thioesterase ot	yes	no	0.847	0.790	0.244	2e-20
P38747	307	OTU domain-containing pro	yes	no	0.814	0.801	0.256	1e-14

>sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1

 Score =  148 bits (373), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 150/299 (50%), Gaps = 55/299 (18%)

Query: 40  ETRDEMLSR-HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 98
           ET +E L++ HRKE   LQ K   +K A  K  K     ++KQ+ E+I++L A+L +KH 
Sbjct: 5   ETAEEQLAKQHRKEKKDLQAKIQSMKNAVPKNDKK----RRKQLTEDIAKLEAELSQKHE 60

Query: 99  KELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSK------GTKRREKRAQQE 152
            EL     SS        ++ +  A+  ++V +  +Q+ PSK        KRR+K+A  E
Sbjct: 61  NELKLQNTSS--------VEEVSDALDSMSVANHEEQSDPSKQSRTSKAQKRRDKKAALE 112

Query: 153 AAREQRIQE-EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAH--L 209
             RE RI E E  N+   R  E  KL +KL    L + +I  DGHC+YRAVE QL    L
Sbjct: 113 KEREMRIAEAEVENLSGSRHQEGLKLREKLVERHLQIKEISSDGHCMYRAVEHQLTERGL 172

Query: 210 SGGEESAQSQV--------------------------ERFENYCKEVESTAAWGGELELR 243
           + G +  + Q                           E FE YC +V  TAAWGG+LEL+
Sbjct: 173 ALGLKELRDQTAQYMRSHADDFMPFLTNPNTGDMYTAEEFEKYCSDVADTAAWGGQLELK 232

Query: 244 ALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 302
           AL+  L+  I +     P + +G+EY           I L Y RHA+GLGEHYNSV P+
Sbjct: 233 ALSQVLQLPIEVIQADSPCITIGEEYDK-------PKITLIYMRHAYGLGEHYNSVEPL 284

Danio rerio (taxid: 7955)

>sp|Q5ZIP6|OTU6B_CHICK OTU domain-containing protein 6B OS=Gallus gallus GN=OTUD6B PE=2 SV=1

 Score =  147 bits (372), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 102/288 (35%), Positives = 149/288 (51%), Gaps = 46/288 (15%)

Query: 44  EMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELAS 103
           +++ R R+E  +LQ K   +K A  K  K     ++KQ+ EE+++L A+L +KH +EL  
Sbjct: 17  QLVKRQRREKRELQAKIQGMKNAVPKNDKK----RRKQLAEEVAKLEAELEQKHKEELKQ 72

Query: 104 LGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQ---AKPSKGTKRREKRAQQE-AAREQRI 159
           L  +     E++ +D++   VA   +  +  Q    + SK  KRREK+A  E    E+  
Sbjct: 73  LKEAMP---EQNKIDSIADGVANFELEGREQQIQHPRISKAQKRREKKAALEKEREERIA 129

Query: 160 QEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLA--HLSGGEESAQ 217
           + E  N+   R +E +KL   L    L +  I  DGHC+YRA+EDQL   H S    + +
Sbjct: 130 EAEIENLTGARHLESQKLASLLAARHLEIKQIPSDGHCMYRAIEDQLKDHHNSWTVATLR 189

Query: 218 SQV--------------------------ERFENYCKEVESTAAWGGELELRALTHCLRK 251
           +Q                           E FE YC ++ +TAAWGG+LELRAL+H L+ 
Sbjct: 190 NQTAKYIHSHFDDFLPFLTNPNTGDMYSKEEFEKYCDDIANTAAWGGQLELRALSHILQT 249

Query: 252 HIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 299
            I +     P + +G+EY       SG  IIL Y RHA+GLGEHYNSV
Sbjct: 250 PIEVVQMDSPSIIVGEEY-------SGKPIILVYMRHAYGLGEHYNSV 290

Gallus gallus (taxid: 9031)

>sp|Q6GM06|OTU6B_XENLA OTU domain-containing protein 6B OS=Xenopus laevis GN=otud6b PE=2 SV=1

 Score =  145 bits (366), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 148/287 (51%), Gaps = 47/287 (16%)

Query: 45  MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 104
           ++ + RKE  ++Q K   +K +  K  K     ++KQ+ E+I++L A++  +H +EL +L
Sbjct: 13  LIKQQRKEKKEVQAKIQCMKNSVPKNDKK----RRKQMTEDIAKLEAEVEARHKEELEAL 68

Query: 105 GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKP--SKGTKRREKRAQQEAAREQRIQE- 161
               +   + S++ N    V  + + S+    +P  SK  KRREK+A QE  R+ RI E 
Sbjct: 69  AQKPTEPTQVSSITN---GVTSLDLGSEEPVQQPRVSKAQKRREKKAAQEKERDDRIAEA 125

Query: 162 EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVE------------------ 203
           E +N+   R +E +KL + L    L +  I  DGHC+YRA+E                  
Sbjct: 126 EIANLSGARHLESQKLAQILAERELQIRQIPSDGHCMYRAIEHQLNEQGNSLTVANLRSQ 185

Query: 204 ----------DQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHI 253
                     D L  L+          E F+ YC ++ +T AWGG+LELRAL+H L+  I
Sbjct: 186 TADYMQKRAEDFLPFLTNSSTGDMYTQEEFQKYCTDIVNTPAWGGQLELRALSHILKTPI 245

Query: 254 -MIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 299
            +I + S P V +G+EYSN         I L Y RHA+GLGEHYNSV
Sbjct: 246 EVIQAESLPIV-IGEEYSN-------KPITLVYMRHAYGLGEHYNSV 284

Xenopus laevis (taxid: 8355)

>sp|Q8N6M0|OTU6B_HUMAN OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1

 Score =  145 bits (366), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/281 (35%), Positives = 149/281 (53%), Gaps = 46/281 (16%)

Query: 48  RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYS 107
           RHRKE  +LQ K   +K A  K  K     ++KQ+ E++++L  ++ +KH +EL  L  +
Sbjct: 18  RHRKEKKELQAKIQGMKNAVPKNDKK----RRKQLTEDVAKLEKEMEQKHREELEQLKLT 73

Query: 108 SSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQE-AAREQRIQEEQSNI 166
           +    +++ +D++  AV    ++ ++   + SK  KRREK+A  E    E+  + E  N+
Sbjct: 74  T----KENKIDSV--AVNISNLVLENQPPRISKAQKRREKKAALEKEREERIAEAEIENL 127

Query: 167 VSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQL----------AHLSGGEESA 216
              R +E EKL + L    L +  I  DGHC+Y+A+EDQL          A  S   E  
Sbjct: 128 TGARHMESEKLAQILAARQLEIKQIPSDGHCMYKAIEDQLKEKDCALTVVALRSQTAEYM 187

Query: 217 QSQVE------------------RFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSG 258
           QS VE                   F+ YC+++ +TAAWGG+LELRAL+H L+  I I   
Sbjct: 188 QSHVEDFLPFLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQA 247

Query: 259 SFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 299
             P + +G+EYS          +IL Y RHA+GLGEHYNSV
Sbjct: 248 DSPPIIVGEEYSK-------KPLILVYMRHAYGLGEHYNSV 281

Homo sapiens (taxid: 9606)

>sp|Q5M8L0|OTU6B_XENTR OTU domain-containing protein 6B OS=Xenopus tropicalis GN=otud6b PE=2 SV=1

 Score =  144 bits (363), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 142/289 (49%), Gaps = 51/289 (17%)

Query: 45  MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 104
           ++ +HRKE   LQ K   +K +  K  K     ++KQ+ E+I++L A L  +H +EL + 
Sbjct: 13  LIKQHRKEKRDLQAKIQSMKNSVPKNDKK----RRKQLTEDIAKLEADLDVRHKEELEAF 68

Query: 105 GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQA-----KPSKGTKRREKRAQQEAAREQRI 159
                   + S + N      GVT +   ++A     + SK  KRREK+A QE  R++RI
Sbjct: 69  AQKQPEPTQVSGITN------GVTSLDLGNEAPVQQPRQSKAQKRREKKAAQEKERDERI 122

Query: 160 QE-EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVE--------------- 203
            E E +N+   R +E +KL + L    L +  I  DGHC+YRA+E               
Sbjct: 123 AEAEIANLSGARHLESQKLARILAERELQIRQIPSDGHCMYRAIEHQLRERGNDLTVANL 182

Query: 204 -------------DQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLR 250
                        D L  L+          E F  YC ++ +T AWGG+LELRAL+H L+
Sbjct: 183 RSQTADYMQNHAEDFLPFLTNSSTGDMYTQEEFLKYCTDIVNTPAWGGQLELRALSHILK 242

Query: 251 KHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 299
             I +       + +G+EYS+        +I L Y RHA+GLGEHYNSV
Sbjct: 243 TAIEVIQAESSPIVIGEEYSS-------KAITLVYMRHAYGLGEHYNSV 284

Xenopus tropicalis (taxid: 8364)

>sp|Q8K2H2|OTU6B_MOUSE OTU domain-containing protein 6B OS=Mus musculus GN=Otud6b PE=2 SV=1

 Score =  134 bits (338), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 143/286 (50%), Gaps = 45/286 (15%)

Query: 43  DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELA 102
           ++++ RHRKE  +LQ K   +K A  K  K     ++KQ+ E++++L  ++ +KH +EL 
Sbjct: 13  EQLVRRHRKEKKELQAKIQGMKNAVPKNDKK----RRKQLTEDVAKLEREMEQKHREELE 68

Query: 103 SLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQE-AAREQRIQE 161
            L   +      S +D++  AV    ++ ++   + SK  KRREK+A  E    E+  + 
Sbjct: 69  QLKQLTFKD---SKIDSV--AVNISNLVLENQPPRISKAQKRREKKAALEKEREERIAEA 123

Query: 162 EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQL--------------- 206
           E  N+   R +E EKL + L    L +  I  DGHC+Y A+EDQL               
Sbjct: 124 EIENLSGARHLESEKLAQILAARELEIKQIPSDGHCMYGALEDQLREQDCALTVASLRRQ 183

Query: 207 -------------AHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHI 253
                          L+          E F  YC ++ +TAAWGG+LELRAL+H L+  I
Sbjct: 184 TAEYMQTHSDDFLPFLTNPSTGDMYTPEEFGKYCDDIVNTAAWGGQLELRALSHILQTPI 243

Query: 254 MIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 299
            I     P + +G+EY         + ++L Y RHA+GLGEHYNSV
Sbjct: 244 EILQADAPPIIVGEEYPR-------NPLVLVYMRHAYGLGEHYNSV 282

Mus musculus (taxid: 10090)

>sp|Q6IE21|OTU6A_MOUSE OTU domain-containing protein 6A OS=Mus musculus GN=Otud6a PE=2 SV=1

 Score =  132 bits (332), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 143/285 (50%), Gaps = 46/285 (16%)

Query: 45  MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 104
           ++ RH +E  +LQ     LK +  K  K     ++KQ+  +ISRL A++ ++H +EL   
Sbjct: 11  VIRRHYREKRELQAHIQTLKASVPKNDKG----RRKQMLADISRLEAEMEQRHKQELEKF 66

Query: 105 GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQS 164
           G      N  S++D++   +  + +  ++   +P K  KRR++RA QE   ++R+   Q+
Sbjct: 67  G-----ENPDSSVDSVTADLEKMNL--ENMPPRPPKAQKRRDRRAHQERRHQERMPAAQA 119

Query: 165 -NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQV--- 220
             + ++R  E+EK+   LG   L +  I  DGHC+YRA++DQL   S   ES + +    
Sbjct: 120 EQLAANRREEEEKVAAILGAKNLEMKTIPADGHCMYRAIQDQLV-FSVTIESLRYRTAYY 178

Query: 221 -----------------------ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYS 257
                                  E F  YC ++   A+WGG+LELRAL+H L+  I +  
Sbjct: 179 MRKHIDDFLPFFTEPEAGNFYTREDFLRYCDDIVHNASWGGQLELRALSHVLQTPIEVVQ 238

Query: 258 GSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 302
            + P + +G+EY+          + L Y  +A   GEHYNSV PI
Sbjct: 239 ANSPTIVIGEEYTR-------KPVTLVYLHYACDFGEHYNSVKPI 276

Mus musculus (taxid: 10090)

>sp|Q7L8S5|OTU6A_HUMAN OTU domain-containing protein 6A OS=Homo sapiens GN=OTUD6A PE=2 SV=1

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 143/288 (49%), Gaps = 53/288 (18%)

Query: 45  MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 104
           +L RH++E  +LQ +   LK +  K  K     K+KQ+ ++++R+ A++ +KH +EL   
Sbjct: 11  ILRRHQRERQELQAQIRSLKNSVPKTDKT----KRKQLLQDVARMEAEMAQKHRQELEKF 66

Query: 105 GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQR----IQ 160
                   + S+++++V+ +A + +     + +P + +K   KR + E+   +R     Q
Sbjct: 67  -------QDDSSIESVVEDLAKMNL-----ENRPPRSSKAHRKRERMESEERERQESIFQ 114

Query: 161 EEQS-NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAH----------- 208
            E S ++   +  E+EKL   LG  GL +  I  DGHC+YRA++DQL             
Sbjct: 115 AEMSEHLAGFKREEEEKLAAILGARGLEMKAIPADGHCMYRAIQDQLVFSVSVEMLRCRT 174

Query: 209 --------------LSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIM 254
                          S  E S     + F  YC  +  T AWGG+LELRAL+H L+  I 
Sbjct: 175 ASYMKKHVDEFLPFFSNPETSDSFGYDDFMIYCDNIVRTTAWGGQLELRALSHVLKTPIE 234

Query: 255 IYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 302
           +     P + +G+EY           IIL Y R+A+ LGEHYNSV P+
Sbjct: 235 VIQADSPTLIIGEEYVK-------KPIILVYLRYAYSLGEHYNSVTPL 275

Homo sapiens (taxid: 9606)

>sp|Q9UUK3|OTU2_SCHPO Ubiquitin thioesterase otu2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=otu2 PE=4 SV=1

 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 153/311 (49%), Gaps = 55/311 (17%)

Query: 36  QKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 95
           ++K +  +E+LS+ R+E  +LQ+K T L+K   +G+K +++A    ++++IS++ A L +
Sbjct: 19  KRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRA----LQQKISQMEADLSQ 74

Query: 96  KHAKELASLGYSSSNGNEKSN---LDNLVKAVAGVTVIS-------------QHDQAKPS 139
           KHA E   L       NE      L+ L++ +    + +             ++   +P 
Sbjct: 75  KHATERQKLDKGDEETNETQQEDLLNTLLQQMEDTKITTAEKSSVQSSLNTKENTPQQPK 134

Query: 140 KGTKRREKRAQQEAAREQRIQEE---QSNIVSD-RTVEDEKLEKKLGPLGLTVNDIKPDG 195
           K   R+++R ++  A  +++ E+   +S  ++D +  E +K  K L   GL   DI  DG
Sbjct: 135 KSRNRQKERLERRKAEMKKMSEQAELESEKMADLKNEEKKKFSKILEEAGLVAVDIPADG 194

Query: 196 HCLYRAVEDQLAHLSGGEESAQS-----------QVERFE---------------NYCKE 229
           +CL+ ++  QL +    + ++Q+             E+FE               +YC E
Sbjct: 195 NCLFASISHQLNYHHNVKLNSQALRNKSADYVLKHCEQFEGFLLDEESGEVLPVSDYCNE 254

Query: 230 VESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHA 289
           + + + WG ++E++AL + L   + +Y+   P ++      N  +      + ++Y++H 
Sbjct: 255 IRNNSKWGSDIEIQALANSLEVPVHVYNTEGPVLKF-----NPSTVKFEKPLCIAYYQHL 309

Query: 290 FGLGEHYNSVI 300
           FGLG HYNS++
Sbjct: 310 FGLGAHYNSLL 320

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38747|OTU2_YEAST OTU domain-containing protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OTU2 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 136/308 (44%), Gaps = 62/308 (20%)

Query: 40  ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 99
           E  +++L+RHRKE   LQNK T +KK A        K+K+K+V  +   L  KL+ K   
Sbjct: 11  ENMEDILARHRKENKDLQNKITGMKKQAT-------KSKRKEVNSKCLDLQDKLKTKQEN 63

Query: 100 ELASLGYSSSNGNEKSNLDNLV--KAVAGVTV-------ISQHDQAKPSKGTKRREKRAQ 150
           E+     +++   +    D +   K +  +++        +   Q +    TK+R  R +
Sbjct: 64  EIRDWKIANNEVFDAEQEDEVTPEKLLEQLSISRDEKEQQNVPVQQQQQGQTKKRRNRQK 123

Query: 151 QEAAREQ----RIQEEQSNIVSD----RTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAV 202
           +  A+      +++EE +   S     + +E E +++      L   DI+PDGHCL+ ++
Sbjct: 124 ERLAKRDAAIAKMKEEAALEASKQPDLKKMEQESIDQLCELKKLKQFDIQPDGHCLFASI 183

Query: 203 EDQLAHLSGGEESAQS-------------------------------QVERFENYCKEVE 231
            DQL      ++  Q                                +++  + Y KE+E
Sbjct: 184 LDQLKLRHDPKKLDQDMDVMKLRWLSCNYVQEHRDDFIPYLFDEETMKMKDIDEYTKEME 243

Query: 232 STAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFG 291
            TA WGGE+E+ AL+H     I I     P     + Y+  G       + L Y++H++ 
Sbjct: 244 HTAQWGGEIEILALSHVFDCPISILMSGRP----IQVYNECG---KNPELKLVYYKHSYA 296

Query: 292 LGEHYNSV 299
           LGEHYNS+
Sbjct: 297 LGEHYNSL 304

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
224131236	326	predicted protein [Populus trichocarpa]	0.947	0.877	0.686	1e-114
255571935	325	OTU domain-containing protein 6B, putati	0.940	0.873	0.696	1e-113
449436806	319	PREDICTED: OTU domain-containing protein	0.940	0.890	0.661	1e-112
449520871	325	PREDICTED: LOW QUALITY PROTEIN: OTU doma	0.880	0.818	0.680	1e-110
388521917	326	unknown [Medicago truncatula]	0.880	0.815	0.672	1e-109
357511169	335	OTU domain-containing protein 6B [Medica	0.980	0.883	0.642	1e-109
356505520	324	PREDICTED: LOW QUALITY PROTEIN: OTU doma	0.947	0.882	0.668	1e-107
363807892	324	uncharacterized protein LOC100780620 [Gl	0.947	0.882	0.653	1e-105
225436773	325	PREDICTED: OTU domain-containing protein	0.947	0.88	0.685	1e-104
89953403	327	Fgenesh protein 81 [Beta vulgaris]	0.947	0.874	0.661	1e-101

>gi|224131236|ref|XP_002321034.1| predicted protein [Populus trichocarpa] gi|222861807|gb|EEE99349.1| predicted protein [Populus trichocarpa]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/322 (68%), Positives = 255/322 (79%), Gaps = 36/322 (11%)

Query: 16  MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQ 75
           M+D QEI++ P+EA   + SQK++E+RDEMLSRHRKEI QLQNKE E+KKAAAKGSKAEQ
Sbjct: 1   MSDAQEIQDQPTEAIPANVSQKEEESRDEMLSRHRKEIRQLQNKEIEMKKAAAKGSKAEQ 60

Query: 76  KAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQ 135
           KAKKK VEEE+S+LSAKL+EKHA+ELASLGY+S+NGNE SNLDNLVKAVAGV+V +Q + 
Sbjct: 61  KAKKKLVEEEVSQLSAKLKEKHAEELASLGYNSTNGNESSNLDNLVKAVAGVSVTNQPEH 120

Query: 136 AKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDG 195
           +KPSK  KRR KRAQQEA REQRIQEEQSN+ SDR +EDEKLE+KL PLGLT+N+IKPDG
Sbjct: 121 SKPSKSAKRRGKRAQQEAEREQRIQEEQSNLESDRMIEDEKLERKLEPLGLTINEIKPDG 180

Query: 196 HCLYRAVEDQLAHLSGG-----------------------------------EESAQSQV 220
           HCLYRAVEDQLA LSGG                                   E S  S  
Sbjct: 181 HCLYRAVEDQLALLSGGSAPYDYQELRKLVAAYMRENSPDFLPFFLSDTITEEHSDHSLS 240

Query: 221 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEY-SNGGSDSSGS 279
           +RFENYCKEVEST AWGG+LEL ALTHCLR+HI I+SGSFPDVEMGKEY S+GG+ SS +
Sbjct: 241 DRFENYCKEVESTTAWGGQLELGALTHCLRRHIKIFSGSFPDVEMGKEYKSDGGAGSSNA 300

Query: 280 SIILSYHRHAFGLGEHYNSVIP 301
           SI+LSYH+HAFGLGEHYNSV+P
Sbjct: 301 SIMLSYHKHAFGLGEHYNSVVP 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571935|ref|XP_002526909.1| OTU domain-containing protein 6B, putative [Ricinus communis] gi|223533728|gb|EEF35462.1| OTU domain-containing protein 6B, putative [Ricinus communis]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/320 (69%), Positives = 252/320 (78%), Gaps = 36/320 (11%)

Query: 18  DTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKA 77
           DTQ IEETP EA   +ASQK+QE RDEMLSRHRKEI+QLQNKE ELKKAAAKGSKAEQK+
Sbjct: 2   DTQVIEETPFEAIQTNASQKQQEARDEMLSRHRKEIAQLQNKEIELKKAAAKGSKAEQKS 61

Query: 78  KKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAK 137
           KKKQVEE+IS+LSAKL+EKHA+ELASLGY+S  GNEKSNLDNLVKA+AGV+V +Q + AK
Sbjct: 62  KKKQVEEQISQLSAKLKEKHAEELASLGYNSITGNEKSNLDNLVKAIAGVSVTNQPELAK 121

Query: 138 PSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHC 197
            SKG KRR KRAQQEA REQRIQEEQSN+VSDR +E+EKL+ KL PLGLTVNDIKPDGHC
Sbjct: 122 VSKGAKRRGKRAQQEAEREQRIQEEQSNLVSDRLIENEKLKGKLEPLGLTVNDIKPDGHC 181

Query: 198 LYRAVEDQLAHLSGGE-----------------------------------ESAQSQVER 222
           LYRA+EDQL+ LSGG                                    +S  S  +R
Sbjct: 182 LYRAIEDQLSVLSGGSSPYTYQDLRKMVAAYMREHASDFLPFFLSDNTIEGDSDDSLADR 241

Query: 223 FENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSN-GGSDSSGSSI 281
           FENYCKEVEST+AWGG+LEL ALTHCL KHI I+SGSFPDVEMGKEY N  G+ SS +SI
Sbjct: 242 FENYCKEVESTSAWGGQLELGALTHCLTKHIKIFSGSFPDVEMGKEYKNDDGAGSSNTSI 301

Query: 282 ILSYHRHAFGLGEHYNSVIP 301
           +LSYH+HAFGLGEHYNSV+P
Sbjct: 302 LLSYHKHAFGLGEHYNSVVP 321

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436806|ref|XP_004136183.1| PREDICTED: OTU domain-containing protein 6B-like [Cucumis sativus]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/322 (66%), Positives = 246/322 (76%), Gaps = 38/322 (11%)

Query: 16  MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQ 75
           M DTQ+ E+T S      ASQ+  E+RDEMLS  RKEISQLQNKE ELKKAAA+GSKAEQ
Sbjct: 1   MEDTQQTEDTSSGTVPDKASQENHESRDEMLSLCRKEISQLQNKEIELKKAAARGSKAEQ 60

Query: 76  KAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQ 135
           K KKKQVEEEIS+LS KL++K A+ELASLG+S+SNGNEK N+DNLVKA+AGV++ +Q D 
Sbjct: 61  KVKKKQVEEEISQLSVKLKKKQAEELASLGFSNSNGNEK-NIDNLVKAIAGVSMAAQSDH 119

Query: 136 AKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDG 195
           +KPSK T+R+EKRAQQEA R++RI+EEQSNIVSDR +E+E LEKKL PLGLTVN+IKPDG
Sbjct: 120 SKPSKSTRRKEKRAQQEAERDRRIEEEQSNIVSDRMIENEHLEKKLEPLGLTVNEIKPDG 179

Query: 196 HCLYRAVEDQLAHLSGGE-----------------------------------ESAQSQV 220
           HCLYRAVE+QLA+LSGG                                     S  S  
Sbjct: 180 HCLYRAVENQLAYLSGGSSPYNYQQLREMVAAYMRDHSTDYMPFFLSDNGVEGNSNSSLA 239

Query: 221 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSS 280
           ERFENYCKEVESTAAWGG+LEL ALTHCLRKHIMI+SGSFPDVEMGKEY + G     SS
Sbjct: 240 ERFENYCKEVESTAAWGGQLELGALTHCLRKHIMIFSGSFPDVEMGKEYKSEG--VINSS 297

Query: 281 IILSYHRHAFGLGEHYNSVIPI 302
           I LSYH+HAFGLGEHYNSV+P+
Sbjct: 298 IRLSYHKHAFGLGEHYNSVVPV 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520871|ref|XP_004167456.1| PREDICTED: LOW QUALITY PROTEIN: OTU domain-containing protein 6B-like [Cucumis sativus]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/304 (68%), Positives = 239/304 (78%), Gaps = 38/304 (12%)

Query: 34  ASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 93
           ASQ+  E+RDEMLSRHRKEISQLQNKE ELKKAAA+GSKAEQK K KQVEEEIS+LS KL
Sbjct: 25  ASQENHESRDEMLSRHRKEISQLQNKEIELKKAAARGSKAEQKVKXKQVEEEISQLSVKL 84

Query: 94  REKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEA 153
           ++K A+ELASLG+S+SNGNEK N+DNLVKA+AGV++ +Q D +KPSK T+R+EKRAQQEA
Sbjct: 85  KKKQAEELASLGFSNSNGNEK-NIDNLVKAIAGVSMAAQSDHSKPSKSTRRKEKRAQQEA 143

Query: 154 AREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE 213
            R++RI+EEQSNIVSDR +E+E LEKKL PLGLTVN+IKPDGHCLYRAVE+QLA+LSGG 
Sbjct: 144 ERDRRIEEEQSNIVSDRMIENEHLEKKLEPLGLTVNEIKPDGHCLYRAVENQLAYLSGGS 203

Query: 214 -----------------------------------ESAQSQVERFENYCKEVESTAAWGG 238
                                               S  S  ERFENYCKEVESTAAWGG
Sbjct: 204 SPYNYQQLREMVAAYMRDHSTDYMPFFLSDNGVEGNSNSSLAERFENYCKEVESTAAWGG 263

Query: 239 ELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNS 298
           +LEL ALTHCLRKHIMI+SGSFPDVEMGKEY + G  +  SSI LSYH+HAFGLGEHYNS
Sbjct: 264 QLELGALTHCLRKHIMIFSGSFPDVEMGKEYKSEGVIN--SSIRLSYHKHAFGLGEHYNS 321

Query: 299 VIPI 302
           V+P+
Sbjct: 322 VVPV 325

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521917|gb|AFK49020.1| unknown [Medicago truncatula]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/302 (67%), Positives = 238/302 (78%), Gaps = 36/302 (11%)

Query: 37  KKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 96
           K++ETRDE+L+RHRKEISQLQ KE E+KK AA+GSKAEQKAKK+QVEEE+S+LSAKL+EK
Sbjct: 23  KEEETRDEILARHRKEISQLQKKEVEMKKQAARGSKAEQKAKKRQVEEEVSQLSAKLKEK 82

Query: 97  HAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAARE 156
            AKEL++LGYSS  GNEKSN+DNLVKA+AGV+V SQ +  K SK  +RR+KRAQQEA RE
Sbjct: 83  QAKELSALGYSSGIGNEKSNMDNLVKAIAGVSVSSQPENTKVSKAKQRRDKRAQQEAERE 142

Query: 157 QRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE--- 213
           QRIQ EQ++I+SDRTVE+EKLE+KL PLGLTV +IKPDGHCLYRAVE+QLAHL GG+   
Sbjct: 143 QRIQAEQNDIISDRTVENEKLERKLKPLGLTVCEIKPDGHCLYRAVENQLAHLFGGKSPY 202

Query: 214 --------------------------------ESAQSQVERFENYCKEVESTAAWGGELE 241
                                           +S +S  ++FENYCKEVESTA WGG+LE
Sbjct: 203 TFQQLREMAAAYMMKHTSDFLPFCLSENLIEGDSDESIAQKFENYCKEVESTAIWGGQLE 262

Query: 242 LRALTHCLRKHIMIYSGSFPDVEMGKEY-SNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 300
           L ALTHCL+KHIMI+SGSFPDVEMGKEY S  G  SSGSSI+LSYH HAFGLGEHYNSV+
Sbjct: 263 LGALTHCLKKHIMIFSGSFPDVEMGKEYKSADGIGSSGSSIMLSYHMHAFGLGEHYNSVV 322

Query: 301 PI 302
           PI
Sbjct: 323 PI 324

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511169|ref|XP_003625873.1| OTU domain-containing protein 6B [Medicago truncatula] gi|355500888|gb|AES82091.1| OTU domain-containing protein 6B [Medicago truncatula]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/333 (64%), Positives = 254/333 (76%), Gaps = 37/333 (11%)

Query: 7   LSTLILGTQMADTQEIEETPSEAHSGDASQ-KKQETRDEMLSRHRKEISQLQNKETELKK 65
           ++T+I    M DTQE+EE   E  S   S+ K++ETRDE+L+RHRKEISQLQ KE E+KK
Sbjct: 1   MTTVIKVVPMEDTQEVEEVQEEVISDKTSENKEEETRDEILARHRKEISQLQKKEVEMKK 60

Query: 66  AAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVA 125
            AA+GSKAEQKAKK+QVEEE+S+LSAKL+EK AKEL++LGYSS  GNEKSN+DNLVKA+A
Sbjct: 61  QAARGSKAEQKAKKRQVEEEVSQLSAKLKEKQAKELSALGYSSGIGNEKSNMDNLVKAIA 120

Query: 126 GVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLG 185
           GV+V SQ +  K SK  +RR+KRAQQEA REQRIQ EQ++ +SDRTVE+EKLE+KL PLG
Sbjct: 121 GVSVSSQPENTKVSKAKQRRDKRAQQEAEREQRIQAEQNDNISDRTVENEKLERKLKPLG 180

Query: 186 LTVNDIKPDGHCLYRAVEDQLAHLSGGE-------------------------------- 213
           LTV +IKPDGHCLYRAVE+QLAHL GG+                                
Sbjct: 181 LTVCEIKPDGHCLYRAVENQLAHLFGGKSPYTFQQLREMAAAYMRKHTSDFLPFCLSENL 240

Query: 214 ---ESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEY- 269
              +S +S  ++FENYCKEVESTA WGG+LEL ALTHCL+KHIMI+SGSFPDVEMGKEY 
Sbjct: 241 IEGDSDESIAQKFENYCKEVESTAIWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYK 300

Query: 270 SNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 302
           S  G  SSGSSI+LSYH HAFGLGEHYNSV+PI
Sbjct: 301 SADGIGSSGSSIMLSYHMHAFGLGEHYNSVVPI 333

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505520|ref|XP_003521538.1| PREDICTED: LOW QUALITY PROTEIN: OTU domain-containing protein 6B-like [Glycine max]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/323 (66%), Positives = 247/323 (76%), Gaps = 37/323 (11%)

Query: 16  MADTQEIEETPSEAHSGDASQKKQ-ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAE 74
           M DTQEIEE   E    D + KKQ ET DE LSRHRKEI QLQ KE E+KKAAA+GSKAE
Sbjct: 1   MEDTQEIEEQGHEEVISDKTFKKQQETLDEXLSRHRKEILQLQKKEVEMKKAAARGSKAE 60

Query: 75  QKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHD 134
           QKAKKKQVEEE+S+LSAKL+E  AKELA+LGY+SSNGNEKSNLD+LVKA+AGV+V SQ +
Sbjct: 61  QKAKKKQVEEEVSQLSAKLKENQAKELAALGYNSSNGNEKSNLDSLVKAIAGVSVASQPE 120

Query: 135 QAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPD 194
             K SK  +RREKRAQQEA REQRIQ EQS+I+SDR +E+EKLEKKL PLGLTV +IKPD
Sbjct: 121 HTKVSKAKQRREKRAQQEAEREQRIQSEQSDIISDRMIENEKLEKKLKPLGLTVCEIKPD 180

Query: 195 GHCLYRAVEDQLAHLSGG-----------------------------------EESAQSQ 219
           GHCLYRAVEDQLA LSGG                                   ++S +S 
Sbjct: 181 GHCLYRAVEDQLALLSGGRSPYTYQDLREMVAAYMRNHTSDFLPFFLSENLIEDDSDESP 240

Query: 220 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEY-SNGGSDSSG 278
            ++FENYCKEVESTA WGG+LEL ALTHCL+KHIMI+SGSFPDVEMGKEY S+GG+  S 
Sbjct: 241 AQKFENYCKEVESTATWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYKSDGGAGMSN 300

Query: 279 SSIILSYHRHAFGLGEHYNSVIP 301
            SI+LSYH+HAFGLGEHYNSV+P
Sbjct: 301 LSIMLSYHKHAFGLGEHYNSVVP 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807892|ref|NP_001242191.1| uncharacterized protein LOC100780620 [Glycine max] gi|255641250|gb|ACU20902.1| unknown [Glycine max]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 245/323 (75%), Gaps = 37/323 (11%)

Query: 16  MADTQEIEETP-SEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAE 74
           M DTQEIEE    E  S   S+K+QET DE+LSRHRKEI QLQ KE E+KKA A+GSKAE
Sbjct: 1   MEDTQEIEEQAHKEVISDKTSEKQQETLDEILSRHRKEILQLQKKEVEMKKATARGSKAE 60

Query: 75  QKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHD 134
           QKAKKKQVEEE+ +LSAKL+E HAKEL +LGY S NGNEKSNLD+LVKA+AGV+V SQ +
Sbjct: 61  QKAKKKQVEEEVCQLSAKLKENHAKELTALGYISGNGNEKSNLDSLVKAIAGVSVTSQPE 120

Query: 135 QAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPD 194
             K SK  +RR+KRAQQEA REQRIQ EQS+I+SDR +E+EKLEKKL PLGLTV +IKPD
Sbjct: 121 HTKVSKAKQRRDKRAQQEAEREQRIQAEQSDIISDRVIENEKLEKKLKPLGLTVCEIKPD 180

Query: 195 GHCLYRAVEDQLAHLSGG-----------------------------------EESAQSQ 219
           GHCLYRA+EDQLA LSGG                                   ++S +S 
Sbjct: 181 GHCLYRAIEDQLAILSGGRSPYTYQELREMVAAYMRNHTSDFLPFFLSENLIEDDSNESF 240

Query: 220 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEY-SNGGSDSSG 278
            ++F NYCKEVESTA WGG+LEL ALTHCL+KHIMI+SGSFPDVEMGKEY S+GG+  S 
Sbjct: 241 AQKFGNYCKEVESTATWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYKSDGGTGLSN 300

Query: 279 SSIILSYHRHAFGLGEHYNSVIP 301
           SSI+LSYH+HAFGLGEHYNSV+P
Sbjct: 301 SSIMLSYHKHAFGLGEHYNSVVP 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436773|ref|XP_002267732.1| PREDICTED: OTU domain-containing protein 6B isoform 2 [Vitis vinifera]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/321 (68%), Positives = 247/321 (76%), Gaps = 35/321 (10%)

Query: 16  MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQ 75
           M DTQE +  P E    D  +KK+ET DEMLSRHRKEISQLQNKE  +KKAAAKGSKAEQ
Sbjct: 1   MEDTQEKDGKPPEEFPEDTHEKKRETLDEMLSRHRKEISQLQNKEAAMKKAAAKGSKAEQ 60

Query: 76  KAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQ 135
           KAKKKQVE+EIS+LS+ L+EK A ELAS+GYSS +G EKSNLDNLVKA+AGV+V SQ + 
Sbjct: 61  KAKKKQVEDEISQLSSDLKEKQAAELASIGYSSGSGKEKSNLDNLVKAIAGVSVTSQAEH 120

Query: 136 AKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDG 195
           ++PSK  KRREKRAQQEAAREQRIQEEQSNIVSDR +E+E LEKKL PLGL VNDIKPDG
Sbjct: 121 SRPSKSAKRREKRAQQEAAREQRIQEEQSNIVSDRMIENEILEKKLEPLGLAVNDIKPDG 180

Query: 196 HCLYRAVEDQLAHLSGGE---------------------------------ESAQSQVER 222
           HCLYRAVEDQLA LSGG                                  +S  S  ER
Sbjct: 181 HCLYRAVEDQLALLSGGSSPYTYQELREMVAAYMRKHASDFLPFFLSETEGDSDISLAER 240

Query: 223 FENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSN--GGSDSSGSS 280
           FENYCKE+ESTAAWGG+LEL ALTHCL+KHIMI+SGSFPDVEMGKEY +  G +D+S  S
Sbjct: 241 FENYCKEIESTAAWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYKSDVGRTDTSNQS 300

Query: 281 IILSYHRHAFGLGEHYNSVIP 301
           I+LSYH+HAFGLGEHYNSVIP
Sbjct: 301 IMLSYHKHAFGLGEHYNSVIP 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89953403|gb|ABD83295.1| Fgenesh protein 81 [Beta vulgaris]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/325 (66%), Positives = 245/325 (75%), Gaps = 39/325 (12%)

Query: 16  MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQ 75
           M  + EIE   ++ +  DAS KKQETRDEMLSRHRKEI QLQNKE E+KKAAAKGSKAEQ
Sbjct: 1   MEHSSEIEVLVAQENFSDASVKKQETRDEMLSRHRKEIGQLQNKEIEMKKAAAKGSKAEQ 60

Query: 76  KAKKKQVEEEISRLSAKLREKHAKELASLGYSSS---NGNEKSNLDNLVKAVAGVTVIS- 131
           KAKKKQVEEEI++LSAKL+EKHA+EL+SLGY SS   +GN++ NLD LVKA+AGV+V S 
Sbjct: 61  KAKKKQVEEEIAKLSAKLKEKHAQELSSLGYISSSKVDGNDRGNLDTLVKAIAGVSVASA 120

Query: 132 QHDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDI 191
            ++  KPSK  KRREKRAQ+EAAREQRI+EEQS+IVSDRTVE+E LEKKLGPLGLT+ ++
Sbjct: 121 ANNNHKPSKSVKRREKRAQEEAAREQRIKEEQSSIVSDRTVENELLEKKLGPLGLTIYEV 180

Query: 192 KPDGHCLYRAVEDQLAHLSGGE-----------------------------------ESA 216
           KPDGHCLYRAVEDQL HLS G                                    ES 
Sbjct: 181 KPDGHCLYRAVEDQLVHLSRGSSPYNFQQLREMVASYMRDHAFDFLPFFTSENAVEGESD 240

Query: 217 QSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDS 276
            S  +RFE+YCKEVESTAAWGG+LEL ALTHCL+KHIMI+SGSFPDVEMGKEY      S
Sbjct: 241 DSLSQRFESYCKEVESTAAWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYKIDDDAS 300

Query: 277 SGSSIILSYHRHAFGLGEHYNSVIP 301
             S I LSYHRHAFGLGEHYNSV+P
Sbjct: 301 LSSCIKLSYHRHAFGLGEHYNSVVP 325

Source: Beta vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
TAIR|locus:2099172	332	AT3G62940 [Arabidopsis thalian	0.708	0.644	0.402	6.1e-66
ZFIN|ZDB-GENE-040426-974	293	otud6b "OTU domain containing	0.307	0.317	0.41	1.7e-24
MGI|MGI:1919451	294	Otud6b "OTU domain containing	0.298	0.306	0.422	7.4e-23
DICTYBASE|DDB_G0279375	340	DDB_G0279375 "OTU domain conta	0.271	0.241	0.406	3.1e-19
MGI|MGI:3644685	290	Otud6a "OTU domain containing	0.248	0.258	0.402	2.8e-16
UNIPROTKB|G4NEZ8	304	MGG_11505 "Uncharacterized pro	0.251	0.25	0.341	7.9e-14
SGD|S000001005	307	OTU2 "Protein of unknown funct	0.245	0.241	0.345	1.7e-12
CGD|CAL0002605	323	orf19.1959 [Candida albicans (	0.245	0.229	0.296	1.3e-10
ASPGD|ASPL0000026973	340	AN5638 [Emericella nidulans (t	0.364	0.323	0.333	2.5e-10
POMBASE|SPAC1952.03	324	otu2 "ubiquitin specific cyste	0.268	0.25	0.284	2.8e-09

TAIR|locus:2099172 AT3G62940 [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
 Identities = 91/226 (40%), Positives = 122/226 (53%)

Query:    16 MADTQEIEETPSEAHSGDASQKKQ-ETRDEMLSRHRKEISQLQNKETXXXXXXXXXXXXX 74
             MAD +  E   SE    DASQ++Q ET +EML+RHR+EI QLQNKET             
Sbjct:     1 MADNKTSEGIVSEETPMDASQEQQHETVEEMLARHRQEIKQLQNKETEMKKAAAKGSKAE 60

Query:    75 XXXXXXXXXXXISRLSAKLREKHAKELASLGYSSSNGN---------EKSNLDNLVKAVA 125
                        IS+LS KL++K  KELAS G+SSS+ N         +K ++D LV+A+A
Sbjct:    61 QKAKKKQVEDDISKLSTKLKDKQLKELASQGFSSSSSNNIAKDETTEKKGDIDTLVRAIA 120

Query:   126 GVTVISQHDQAKPSKGTKXXXXXXXXXXXXXXXXXXXXSNIVSDRTVEDXXXXXXXXXXX 185
             GV+V +Q + +KPSK  K                    S++ SDR VE+           
Sbjct:   121 GVSVTAQQEHSKPSKSVKRREKRAKEEADREQRIKEEQSHVKSDRMVENAKLEKKLKPLG 180

Query:   186 XTVNDIKPDGHCLYRAVEDQLAHLSGGEE--SAQSQVERFENYCKE 229
              TV++IKPDGHCLYRAVE+QLA+ SGG    + Q+  E   +Y +E
Sbjct:   181 LTVSEIKPDGHCLYRAVENQLANRSGGASPYTYQNLREMAASYMRE 226

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

ZFIN|ZDB-GENE-040426-974 otud6b "OTU domain containing 6B" [Danio rerio (taxid:7955)]

 Score = 189 (71.6 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
 Identities = 41/100 (41%), Positives = 55/100 (55%)

Query:   203 EDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD 262
             +D +  L+          E FE YC +V  TAAWGG+LEL+AL+  L+  I +     P 
Sbjct:   192 DDFMPFLTNPNTGDMYTAEEFEKYCSDVADTAAWGGQLELKALSQVLQLPIEVIQADSPC 251

Query:   263 VEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSVIPI 302
             + +G+EY           I L Y RHA+GLGEHYNSV P+
Sbjct:   252 ITIGEEYDKPK-------ITLIYMRHAYGLGEHYNSVEPL 284

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1919451 Otud6b "OTU domain containing 6B" [Mus musculus (taxid:10090)]

 Score = 188 (71.2 bits), Expect = 7.4e-23, Sum P(2) = 7.4e-23
 Identities = 41/97 (42%), Positives = 55/97 (56%)

Query:   203 EDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD 262
             +D L  L+          E F  YC ++ +TAAWGG+LELRAL+H L+  I I     P 
Sbjct:   193 DDFLPFLTNPSTGDMYTPEEFGKYCDDIVNTAAWGGQLELRALSHILQTPIEILQADAPP 252

Query:   263 VEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSV 299
             + +G+EY           ++L Y RHA+GLGEHYNSV
Sbjct:   253 IIVGEEYPRNP-------LVLVYMRHAYGLGEHYNSV 282

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279375 DDB_G0279375 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 170 (64.9 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
 Identities = 37/91 (40%), Positives = 54/91 (59%)

Query:   213 EESAQSQVERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXX 271
             E+   +  +  + YC+E V +   WGG +EL+AL+  L+K I I++    D+ +G+E+  
Sbjct:   256 EDEYSTAEDPIQEYCQEQVLTIGKWGGHIELKALSQSLKKVITIFNAYSNDIIIGEEFTN 315

Query:   272 XXXXXXXXXIILSYHRHAFGLGEHYNSVIPI 302
                      I L+YHRHAF LGEHYNS IPI
Sbjct:   316 P--------IYLTYHRHAFTLGEHYNSAIPI 338

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:3644685 Otud6a "OTU domain containing 6A" [Mus musculus (taxid:10090)]

 Score = 153 (58.9 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
 Identities = 33/82 (40%), Positives = 46/82 (56%)

Query:   221 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXX 280
             E F  YC ++   A+WGG+LELRAL+H L+  I +   + P + +G+EY           
Sbjct:   202 EDFLRYCDDIVHNASWGGQLELRALSHVLQTPIEVVQANSPTIVIGEEYTRKP------- 254

Query:   281 IILSYHRHAFGLGEHYNSVIPI 302
             + L Y  +A   GEHYNSV PI
Sbjct:   255 VTLVYLHYACDFGEHYNSVKPI 276

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4NEZ8 MGG_11505 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 124 (48.7 bits), Expect = 7.9e-14, Sum P(3) = 7.9e-14
 Identities = 27/79 (34%), Positives = 40/79 (50%)

Query:   221 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXX 280
             E  ++Y +++  TA WGG +EL AL       + + +     V   KE            
Sbjct:   225 EPLDDYVRKMRDTAEWGGHMELLALASTYNVEVRVIADGRTAVVQPKE---PKEDEPARQ 281

Query:   281 IILSYHRHAFGLGEHYNSV 299
             + L+Y+RH FGLGEHYNS+
Sbjct:   282 VWLAYYRHGFGLGEHYNSL 300

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

SGD|S000001005 OTU2 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 122 (48.0 bits), Expect = 1.7e-12, Sum P(3) = 1.7e-12
 Identities = 28/81 (34%), Positives = 45/81 (55%)

Query:   219 QVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXX 278
             +++  + Y KE+E TA WGGE+E+ AL+H     I I     P +++  E          
Sbjct:   231 KMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILMSGRP-IQVYNECGKNPE---- 285

Query:   279 XXIILSYHRHAFGLGEHYNSV 299
               + L Y++H++ LGEHYNS+
Sbjct:   286 --LKLVYYKHSYALGEHYNSL 304

GO:0008150 "biological_process" evidence=ND

GO:0005840 "ribosome" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

CGD|CAL0002605 orf19.1959 [Candida albicans (taxid:5476)]

 Score = 112 (44.5 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
 Identities = 24/81 (29%), Positives = 42/81 (51%)

Query:   219 QVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXX 278
             ++   ++Y  E+ +TA WG ++E+ AL+      I IY      + + +           
Sbjct:   247 ELRDLDDYINELTTTAMWGSDMEILALSKVFNCPISIYMAGASTLTINEH-------GQL 299

Query:   279 XXIILSYHRHAFGLGEHYNSV 299
               + L Y++H+FGLGEHYNS+
Sbjct:   300 PELKLGYYKHSFGLGEHYNSL 320

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IEA

ASPGD|ASPL0000026973 AN5638 [Emericella nidulans (taxid:162425)]

 Score = 142 (55.0 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
 Identities = 38/114 (33%), Positives = 57/114 (50%)

Query:   187 TVNDIKPDGHCLYRAVE-DQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRAL 245
             TV   K DG+   RAV  D +A     +E      E  E+Y ++++ TA WGG+LEL+A+
Sbjct:   226 TVASPKHDGYRAVRAVTADFIAEHK--DEFEPFMEEPLESYTRKIKLTAEWGGQLELQAI 283

Query:   246 THCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSV 299
                    I +  G    +E  +             I L+Y+RH +GLGEHYN++
Sbjct:   284 ARAYGVDINVVQGD-GRIEKIEAGDVEEEERAKRVIWLAYYRHTYGLGEHYNAL 336

GO:0005840 "ribosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IEA

POMBASE|SPAC1952.03 otu2 "ubiquitin specific cysteine protease, OTU family, Otu2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 124 (48.7 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
 Identities = 25/88 (28%), Positives = 47/88 (53%)

Query:   213 EESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXX 272
             EES +  V    +YC E+ + + WG ++E++AL + L   + +Y+   P ++        
Sbjct:   240 EESGE--VLPVSDYCNEIRNNSKWGSDIEIQALANSLEVPVHVYNTEGPVLKFNPS---- 293

Query:   273 XXXXXXXXIILSYHRHAFGLGEHYNSVI 300
                     + ++Y++H FGLG HYNS++
Sbjct:   294 -TVKFEKPLCIAYYQHLFGLGAHYNSLL 320

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7ZV00	OTU6B_DANRE	No assigned EC number	0.3612	0.8079	0.8327	yes	no
Q5ZIP6	OTU6B_CHICK	No assigned EC number	0.3541	0.8013	0.8013	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XIV0731	hypothetical protein (327 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•					0.448

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	302
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	2e-19
COG5539	306	COG5539, COG5539, Predicted cysteine protease (OTU	5e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 81.8 bits (202), Expect = 2e-19
 Identities = 36/125 (28%), Positives = 50/125 (40%), Gaps = 22/125 (17%)

Query: 192 KPDGHCLYRAVEDQLAHLSGGEESA-----------QSQVERFENYC--------KEVES 232
             DG+CL+ AV DQL   +G +E             +   E FE +         K +  
Sbjct: 1   PGDGNCLFHAVSDQLG-DAGRQELHDELREAVVEYLRENREDFEKFLEEDENEYYKWISK 59

Query: 233 TAAWGGELELRALTHCLRKHIMIYSGSFPDVEMG-KEYSNGGSDSSGSSIILSYHRHAFG 291
             AWGG +E+ AL H LR  I++Y      + +  K Y      +    I LSY      
Sbjct: 60  DGAWGGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPLNKKPVIRLSYLGLE-Y 118

Query: 292 LGEHY 296
            G HY
Sbjct: 119 TGNHY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

>gnl|CDD|227826 COG5539, COG5539, Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

 Score = 59.1 bits (143), Expect = 5e-10
 Identities = 53/312 (16%), Positives = 104/312 (33%), Gaps = 62/312 (19%)

Query: 35  SQKKQET-RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 93
           +Q   ET  + +  + R E+  LQ K T + K    G         +++  +   LS  L
Sbjct: 6   TQAAAETAMESLTEKQRFELKDLQTKITRIMKQLTFGR------PPQRLNGKCLDLSYAL 59

Query: 94  REKHAKEL--ASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHD----------QAKPSKG 141
            +K   E+  A    + +N  ++ +    ++ +  + + S             +  P + 
Sbjct: 60  SQKDEVEIEKAPKLRAETNEADQEDSLTPLQNIPELGISSFEKSVSQQSINVLEDMPGQD 119

Query: 142 TKRREKRAQQEAAREQRI---QEEQSNIVSDRTVE--DEKLEK--KLGPLGLTVNDIKPD 194
              R  +A++ + R+  +   +E  S  V           LE         +   D + D
Sbjct: 120 DNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGD 179

Query: 195 GHCLYRAVEDQLAHLSGGEESAQSQVERFEN----------------------------Y 226
           G      + DQL       +  +   +R+ +                            Y
Sbjct: 180 GCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTY 239

Query: 227 CKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYH 286
             EV   A+ G  +E++ L   L+      + + P +    + +  G+   G      Y+
Sbjct: 240 VNEVLFDASDGITIEIQQLASLLKNPHYYTNTASPSI----KCNICGTGFVGE---KDYY 292

Query: 287 RHAFGLGEHYNS 298
            HA   G HYN 
Sbjct: 293 AHALATG-HYNF 303

Length = 306

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 33/213 (15%), Positives = 77/213 (36%), Gaps = 16/213 (7%)

Query: 28  EAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKK--QVEEE 85
           E    +  ++ +E          KEI +L+++  EL++   +  +   + K++  ++E E
Sbjct: 252 EEELEELQEELEEAE--------KEIEELKSELEELREELEELQEELLELKEEIEELEGE 303

Query: 86  ISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKP---SKGT 142
           IS L  +L E   +             +   L   ++     T++ + +Q          
Sbjct: 304 ISLLRERLEELENELEELEERLEELKEKIEALKEELEERE--TLLEELEQLLAELEEAKE 361

Query: 143 KRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAV 202
           +  EK +      E+  +  +  + ++   E  ++  +L  L   +  ++     L   +
Sbjct: 362 ELEEKLSALLEELEELFEALREEL-AELEAELAEIRNELEELKREIESLEERLERLSERL 420

Query: 203 EDQLAHLSGGEESAQSQVERFENYCKEVESTAA 235
           ED    L   E   +      E   +E+E    
Sbjct: 421 EDLKEELKELEAELEELQTELEELNEELEELEE 453

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	100.0
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	99.97
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.83
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.51
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.34
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.17
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	99.1
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	97.59
PF05415	104	Peptidase_C36: Beet necrotic yellow vein furovirus	84.66
PF14282	106	FlxA: FlxA-like protein	81.8

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.3e-64  Score=465.26  Aligned_cols=255  Identities=43%  Similarity=0.728  Sum_probs=213.7

Q ss_pred             ccccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCC-CC
Q 022093           38 KQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSN-GNE-KS  115 (302)
Q Consensus        38 ~~e~~eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~EL~~l~~~~~~-~~~-~~  115 (302)
                      ..+++++|++|||+|+|+||++||+|||+++||+|    ++||+++++|++||.+|.+||.+||..+...... ..+ +.
T Consensus        10 ~~~~~e~iLaRHr~E~keLq~ki~~mKk~a~k~~k----~~rK~~~~~~~~le~el~qkH~kEL~~~~~~~~~e~~~~e~   85 (302)
T KOG2606|consen   10 DEESNEEILARHRRERKELQAKITSMKKAAPKGNK----KKRKELTEDIAKLEKELSQKHKKELEKLKLINESEVTPKEN   85 (302)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH----HHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCccccCcccc
Confidence            34556999999999999999999999999999996    8899999999999999999999999999853321 111 22


Q ss_pred             cchhhhhhhcccccccccCCCCCcchhhhHHHHHHHHHHHH-HHHHHHHh--ccCCCchhHHHHHHHHhccCCceEeeeC
Q 022093          116 NLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAARE-QRIQEEQS--NIVSDRTVEDEKLEKKLGPLGLTVNDIK  192 (302)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~Ka~~Rr~kr~a~~~~r~-eri~~e~~--~~~~~r~~E~~~l~~~L~~~gL~i~~Ip  192 (302)
                      ..++++..++.+...+.++.|+.+|++|||.+++..++.++ ++|.++++  +.++.+..|.+.+.+.|...||.+++||
T Consensus        86 ~~~s~l~~~a~~~~~~~ee~P~~sKa~k~r~k~r~e~r~~e~~~~~e~~~~~~~~~~k~~E~~k~~~il~~~~l~~~~Ip  165 (302)
T KOG2606|consen   86 LIESVLSPIANMSLENKEETPRQSKARKRREKKRKEERKREAEKIAEEESLSNQADAKSMEKEKLAQILEERGLKMFDIP  165 (302)
T ss_pred             chhhhhcccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHhccCccccCC
Confidence            24555555666666665555667887777776665555555 78876544  7889999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHhcCCCC-C------------------Ccchhh----------hHhHHHHHHHhhcCCccCcHHHHH
Q 022093          193 PDGHCLYRAVEDQLAHLSGG-E------------------ESAQSQ----------VERFENYCKEVESTAAWGGELELR  243 (302)
Q Consensus       193 ~DGnCLFrAIadQL~~~~~~-~------------------~fd~~~----------~~~feeY~~~m~~t~~WGG~lEL~  243 (302)
                      +||||||+||+|||..++.. .                  +|-+|+          ..+|+.||+.|++|+.|||+|||.
T Consensus       166 ~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL~  245 (302)
T KOG2606|consen  166 ADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLGPEDFDKYCREIRNTAAWGGELELK  245 (302)
T ss_pred             CCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCCHHHHHHHHHHhhhhccccchHHHH
Confidence            99999999999999987654 1                  155543          357999999999999999999999


Q ss_pred             HHHHhhcccEEEEeCCCCceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccCC
Q 022093          244 ALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  302 (302)
Q Consensus       244 ALS~~l~v~I~V~q~~~~~~~ig~e~~~~~~~~~~~~I~L~Y~~h~ygLGeHYnSl~p~  302 (302)
                      |||++|++||+||+.++|++.||++|..      .+||.|+||+|+||||+|||||.|.
T Consensus       246 AlShvL~~PI~Vy~~~~p~~~~geey~k------d~pL~lvY~rH~y~LGeHYNS~~~~  298 (302)
T KOG2606|consen  246 ALSHVLQVPIEVYQADGPILEYGEEYGK------DKPLILVYHRHAYGLGEHYNSVTPL  298 (302)
T ss_pred             HHHHhhccCeEEeecCCCceeechhhCC------CCCeeeehHHhHHHHHhhhcccccc
Confidence            9999999999999999999999999862      5899999999999999999999873

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.4e-31  Score=244.72  Aligned_cols=251  Identities=19%  Similarity=0.158  Sum_probs=195.0

Q ss_pred             cccccc-HHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 022093           36 QKKQET-RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEK  114 (302)
Q Consensus        36 ~~~~e~-~eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~EL~~l~~~~~~~~~~  114 (302)
                      +..-+| |+.++.+||.|.++||.+||.++|+++.|.+    +.|  |+..|..|+..|.++|+-|+..+.....+.++.
T Consensus         7 ~~~~~t~~e~lt~kq~~e~~dlq~kI~~~~kql~~g~~----~qr--l~~k~~~ls~~ls~~~e~~i~k~~~~~~et~ea   80 (306)
T COG5539           7 QAAAETAMESLTEKQRFELKDLQTKITRIMKQLTFGRP----PQR--LNGKCLDLSYALSQKDEVEIEKAPKLRAETNEA   80 (306)
T ss_pred             ccccchHHHHHHhhhhcccHHHHHHHHHHHHHHHccCc----hhh--hccccchHHHHhhhhHHHHhhhhhhhcchhhcc
Confidence            344455 8999999999999999999999999998875    322  999999999999999999999886433222221


Q ss_pred             Ccchhhhh--hhc------------cccccccc-CCCCCcchhhhHHHHHHHHHHHHHHHHHHHhcc----CCCchhHHH
Q 022093          115 SNLDNLVK--AVA------------GVTVISQH-DQAKPSKGTKRREKRAQQEAAREQRIQEEQSNI----VSDRTVEDE  175 (302)
Q Consensus       115 ~~~~~~~~--~~~------------~~~~~~~~-~~~~~~Ka~~Rr~kr~a~~~~r~eri~~e~~~~----~~~r~~E~~  175 (302)
                      ++.+++.+  ..+            +....... .+....+.++||++|..++.+....+++.++.+    +.-...++.
T Consensus        81 ~q~~~l~~~q~~~~~~iss~e~s~~qq~~nv~ed~p~~~d~srl~q~~~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~  160 (306)
T COG5539          81 DQEDSLTPLQNIPELGISSFEKSVSQQSINVLEDMPGQDDNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAIL  160 (306)
T ss_pred             CCCccCCCcccCCccccccCcccccccccchhccCCCCCchHHHHHHHHhhhhhhhHHHHHHHHHHHHhhCccccchhhc
Confidence            12121111  100            11111111 233456999999999999998888777766554    444777888


Q ss_pred             HHHHHhccCCceEeeeCCCCchHHHHHHHHHhcCCCCC-------------C-------------cchhh--hHhHHHHH
Q 022093          176 KLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE-------------E-------------SAQSQ--VERFENYC  227 (302)
Q Consensus       176 ~l~~~L~~~gL~i~~Ip~DGnCLFrAIadQL~~~~~~~-------------~-------------fd~~~--~~~feeY~  227 (302)
                      .+...+..-++.-.+++|||+|+|.+|+|||..+....             .             ||+.+  ...|++||
T Consensus       161 ~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~  240 (306)
T COG5539         161 EIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYV  240 (306)
T ss_pred             CcchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHH
Confidence            88999999999999999999999999999998764321             0             55544  46899999


Q ss_pred             HHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 022093          228 KEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  300 (302)
Q Consensus       228 ~~m~~t~~WGG~lEL~ALS~~l~v~I~V~q~~~~~~~ig~e~~~~~~~~~~~~I~L~Y~~h~ygLGeHYnSl~  300 (302)
                      +.|..++.||+.+|++|||+.|++|+.++...+|.+.+++-       +.+..+-+.|++|+|++| ||||+.
T Consensus       241 ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~ik~n~c-------~~~~~~e~~~~~Ha~a~G-H~n~~~  305 (306)
T COG5539         241 NEVLFDASDGITIEIQQLASLLKNPHYYTNTASPSIKCNIC-------GTGFVGEKDYYAHALATG-HYNFGE  305 (306)
T ss_pred             hhhcccccccchHHHHHHHHHhcCceEEeecCCceEEeecc-------ccccchhhHHHHHHHhhc-CccccC
Confidence            99999999999999999999999999999999998877642       235668899999999999 999975

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.83  E-value=2.6e-21  Score=158.27  Aligned_cols=102  Identities=35%  Similarity=0.652  Sum_probs=73.6

Q ss_pred             CCCCchHHHHHHHHHh----cCCCCCC--------cch-hhhHhHHHHHH--HhhcCCccCcHHHHHHHHHhhcccEEEE
Q 022093          192 KPDGHCLYRAVEDQLA----HLSGGEE--------SAQ-SQVERFENYCK--EVESTAAWGGELELRALTHCLRKHIMIY  256 (302)
Q Consensus       192 p~DGnCLFrAIadQL~----~~~~~~~--------fd~-~~~~~feeY~~--~m~~t~~WGG~lEL~ALS~~l~v~I~V~  256 (302)
                      |||||||||||++||+    +....+.        +-. .-.+.|..|+.  +|+++++|||++||.|||++|+++|.||
T Consensus         1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Wg~~~el~a~a~~~~~~I~v~   80 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGDKMSKPGTWGGEIELQALANVLNRPIIVY   80 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHHHHTSTTSHEEHHHHHHHHHHHTSEEEEE
T ss_pred             CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccccCcHHHHHHHHHHhCCeEEEE
Confidence            7999999999999999    4333221        111 11134455544  5899999999999999999999999999


Q ss_pred             eCCCCceE----ecCCcCCCCCCCCCCeEEEEeccCCCCCCCcc
Q 022093          257 SGSFPDVE----MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHY  296 (302)
Q Consensus       257 q~~~~~~~----ig~e~~~~~~~~~~~~I~L~Y~~h~ygLGeHY  296 (302)
                      +...+...    +...+.   .....++|+|+|+.|.|..|+||
T Consensus        81 ~~~~~~~~~~~~~~~~~~---~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   81 SSSDGDNVVFIKFTGKYP---PLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             CETTTBEEEEEEESCEES---TTTTTTSEEEEEETEEEEETTEE
T ss_pred             EcCCCCccceeeecCccc---cCCCCCeEEEEEcCCccCCCCCC
Confidence            87554422    222111   23457899999999999999999

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=9.4e-15  Score=134.27  Aligned_cols=103  Identities=19%  Similarity=0.394  Sum_probs=83.0

Q ss_pred             ceEeeeCCCCchHHHHHHHHHhcCCCCCC-----------------cch-hhhHhHHHHHHHhhcCCccCcHHHHHHHHH
Q 022093          186 LTVNDIKPDGHCLYRAVEDQLAHLSGGEE-----------------SAQ-SQVERFENYCKEVESTAAWGGELELRALTH  247 (302)
Q Consensus       186 L~i~~Ip~DGnCLFrAIadQL~~~~~~~~-----------------fd~-~~~~~feeY~~~m~~t~~WGG~lEL~ALS~  247 (302)
                      |..+.||.|..|||+||+.-++..-....                 |.+ +++..-.+||.+|.+...|||.|||..||+
T Consensus       110 l~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS~  189 (307)
T KOG3288|consen  110 LSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILSD  189 (307)
T ss_pred             eEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeehh
Confidence            66789999999999999999887544321                 333 246788999999999999999999999999


Q ss_pred             hhcccEEEEeCCCCce-EecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 022093          248 CLRKHIMIYSGSFPDV-EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  300 (302)
Q Consensus       248 ~l~v~I~V~q~~~~~~-~ig~e~~~~~~~~~~~~I~L~Y~~h~ygLGeHYnSl~  300 (302)
                      .|+|.|.||+.....+ .||++-      .....+.|.|.      |.|||++.
T Consensus       190 ~ygveI~vvDiqt~rid~fged~------~~~~rv~llyd------GIHYD~l~  231 (307)
T KOG3288|consen  190 YYGVEICVVDIQTVRIDRFGEDK------NFDNRVLLLYD------GIHYDPLA  231 (307)
T ss_pred             hhceeEEEEecceeeehhcCCCC------CCCceEEEEec------ccccChhh
Confidence            9999999999876544 466431      23568999998      89999874

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.34  E-value=1.1e-12  Score=120.71  Aligned_cols=80  Identities=21%  Similarity=0.307  Sum_probs=52.4

Q ss_pred             cchhhh----HhHHHHHHH-hhcCCccCcHHHHHHHHHhhcccEEEEeCCCC--ceEec-CCcCCCCCCCCCCeEEEEec
Q 022093          215 SAQSQV----ERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFP--DVEMG-KEYSNGGSDSSGSSIILSYH  286 (302)
Q Consensus       215 fd~~~~----~~feeY~~~-m~~t~~WGG~lEL~ALS~~l~v~I~V~q~~~~--~~~ig-~e~~~~~~~~~~~~I~L~Y~  286 (302)
                      |.+|+.    .+|++||.. |...+.-++|+.|.|||++|+++|.|+-.++.  ...+. ..|..+ +....+.|+|.|.
T Consensus       157 y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~~~-~~~~~~~i~LLyr  235 (244)
T PF10275_consen  157 YEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFPPD-NESQEPQITLLYR  235 (244)
T ss_dssp             HGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES-S-STTSS-SEEEEEE
T ss_pred             HhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCCCc-cCCCCCEEEEEEc
Confidence            455654    679999975 89899999999999999999999999887754  11011 112100 1235789999999


Q ss_pred             cCCCCCCCccccccC
Q 022093          287 RHAFGLGEHYNSVIP  301 (302)
Q Consensus       287 ~h~ygLGeHYnSl~p  301 (302)
                      +      .|||-++|
T Consensus       236 p------gHYdIly~  244 (244)
T PF10275_consen  236 P------GHYDILYP  244 (244)
T ss_dssp             T------BEEEEEEE
T ss_pred             C------CccccccC
Confidence            6      59999987

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.17  E-value=2.8e-11  Score=109.98  Aligned_cols=78  Identities=17%  Similarity=0.248  Sum_probs=59.4

Q ss_pred             cchhhh--HhHHHHHHH-hhcCCccCcHHHHHHHHHhhcccEEEEeCCCCce-Eec-CCcCCCCCCCCCCeEEEEeccCC
Q 022093          215 SAQSQV--ERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFPDV-EMG-KEYSNGGSDSSGSSIILSYHRHA  289 (302)
Q Consensus       215 fd~~~~--~~feeY~~~-m~~t~~WGG~lEL~ALS~~l~v~I~V~q~~~~~~-~ig-~e~~~~~~~~~~~~I~L~Y~~h~  289 (302)
                      |.+|++  .+...||.. |+-.+.-.|||+|.|||+++++.|.|.-.+...- ..+ ..|.    ..+.|.|.|.|..  
T Consensus       174 y~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fp----e~s~P~I~LLYrp--  247 (256)
T KOG3991|consen  174 YQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFP----EASAPEIYLLYRP--  247 (256)
T ss_pred             hhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCc----cccCceEEEEecC--
Confidence            566664  588999996 7777778999999999999999999977654221 222 2332    3567899999985  


Q ss_pred             CCCCCccccccCC
Q 022093          290 FGLGEHYNSVIPI  302 (302)
Q Consensus       290 ygLGeHYnSl~p~  302 (302)
                          .|||-++|.
T Consensus       248 ----GHYdilY~~  256 (256)
T KOG3991|consen  248 ----GHYDILYKK  256 (256)
T ss_pred             ----CccccccCC
Confidence                799999983

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=2.8e-11  Score=117.93  Aligned_cols=117  Identities=22%  Similarity=0.236  Sum_probs=85.4

Q ss_pred             HHHHHHhccCCceEeeeCCCCchHHHHHHHHHhcCCCCC----------------CcchhhhHhHHHHHHHhhcCCccCc
Q 022093          175 EKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------------ESAQSQVERFENYCKEVESTAAWGG  238 (302)
Q Consensus       175 ~~l~~~L~~~gL~i~~Ip~DGnCLFrAIadQL~~~~~~~----------------~fd~~~~~~feeY~~~m~~t~~WGG  238 (302)
                      ......+...|+.++.|..||+|+|||++||+++....+                .|..|+.++|..|+..++..+.||.
T Consensus       207 ~~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~~~gn  286 (371)
T KOG2605|consen  207 ERSAKRKKHFGFEYKKVVEDGSCLFRALADQVYGDDEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADGEPGN  286 (371)
T ss_pred             HHHHHHHHHhhhhhhhcccCCchhhhccHHHhhcCHHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCCCCcc
Confidence            344455578899999999999999999999999965433                1777888999999999999999999


Q ss_pred             HHHHHHHHH---hhcccEEEEeCCCCceE-ecCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccC
Q 022093          239 ELELRALTH---CLRKHIMIYSGSFPDVE-MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP  301 (302)
Q Consensus       239 ~lEL~ALS~---~l~v~I~V~q~~~~~~~-ig~e~~~~~~~~~~~~I~L~Y~~h~ygLGeHYnSl~p  301 (302)
                      ++|++|+|.   ....++.|.+...+.++ +.+.+.     .....+++.     |..-.||+++++
T Consensus       287 hie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~n-----~~~~~h~~~~~~  343 (371)
T KOG2605|consen  287 HIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIE-----ESVKMEKYN-----FWVEVHYNTARH  343 (371)
T ss_pred             hHHHhhhhhhhhhccccceeecccccceeccCcccc-----cchhhhhhc-----ccchhhhhhccc
Confidence            999999996   44556666666655553 222211     112223333     334699998875

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=1.4e-05  Score=75.34  Aligned_cols=98  Identities=14%  Similarity=0.138  Sum_probs=71.6

Q ss_pred             eeCCCCchHHHHHHHHHhcCCCC--------------CCcchhh-hHhHHHHHHHhhcCCccC-cHHHHHHHHHhhcccE
Q 022093          190 DIKPDGHCLYRAVEDQLAHLSGG--------------EESAQSQ-VERFENYCKEVESTAAWG-GELELRALTHCLRKHI  253 (302)
Q Consensus       190 ~Ip~DGnCLFrAIadQL~~~~~~--------------~~fd~~~-~~~feeY~~~m~~t~~WG-G~lEL~ALS~~l~v~I  253 (302)
                      ...+|..|+|+|++.-|+.....              ..|.+.+ +.+--.||.++.....|| |.+||.+||+.|++.|
T Consensus       116 p~~~d~srl~q~~~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i  195 (306)
T COG5539         116 PGQDDNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRI  195 (306)
T ss_pred             CCCCchHHHHHHHHhhhhhhhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceee
Confidence            33468899999999888763211              1154443 457789999999999999 9999999999999999


Q ss_pred             EEEeCCCCce-EecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 022093          254 MIYSGSFPDV-EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  300 (302)
Q Consensus       254 ~V~q~~~~~~-~ig~e~~~~~~~~~~~~I~L~Y~~h~ygLGeHYnSl~  300 (302)
                      +|+..+.... .+++.       .....+.+.|.      |.|||+..
T Consensus       196 ~~Vdv~~~~~dr~~~~-------~~~q~~~i~f~------g~hfD~~t  230 (306)
T COG5539         196 HVVDVDKDSEDRYNSH-------PYVQRISILFT------GIHFDEET  230 (306)
T ss_pred             eeeecchhHHhhccCC-------hhhhhhhhhhc------ccccchhh
Confidence            9999885433 33321       12345677777      78999753

>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=84.66  E-value=0.87  Score=36.54  Aligned_cols=59  Identities=15%  Similarity=0.309  Sum_probs=45.3

Q ss_pred             eCCCCchHHHHHHHHHhcCCCCCCcchh---h---hHhHHHHHHHhh--cCCccCcHHHHHHHHHhhcccEEEEe
Q 022093          191 IKPDGHCLYRAVEDQLAHLSGGEESAQS---Q---VERFENYCKEVE--STAAWGGELELRALTHCLRKHIMIYS  257 (302)
Q Consensus       191 Ip~DGnCLFrAIadQL~~~~~~~~fd~~---~---~~~feeY~~~m~--~t~~WGG~lEL~ALS~~l~v~I~V~q  257 (302)
                      |..|.|||.-||+..|...     |+-.   +   ..++..||..++  ++.+|-+   -+.+|+.++|.|.|--
T Consensus         3 ~sR~NNCLVVAis~~L~~T-----~e~l~~~M~An~~~i~~y~~W~r~~~~STW~D---C~mFA~~LkVsm~vkV   69 (104)
T PF05415_consen    3 ASRPNNCLVVAISECLGVT-----LEKLDNLMQANVSTIKKYHTWLRKKRPSTWDD---CRMFADALKVSMQVKV   69 (104)
T ss_pred             ccCCCCeEeehHHHHhcch-----HHHHHHHHHhhHHHHHHHHHHHhcCCCCcHHH---HHHHHHhheeEEEEEE
Confidence            5679999999999999653     4332   1   257899999876  4778976   5689999999998733

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.

>PF14282 FlxA: FlxA-like protein

Probab=81.80  E-value=15  Score=29.81  Aligned_cols=62  Identities=18%  Similarity=0.342  Sum_probs=47.6

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022093           42 RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL  104 (302)
Q Consensus        42 ~eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~EL~~l  104 (302)
                      .+....+=.+.++.|+.+|..+.....-.++ .++.+++.+..+|..|++.|...+.+.-..-
T Consensus        17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e-~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~   78 (106)
T PF14282_consen   17 SDSQIEQLQKQIKQLQEQLQELSQDSDLDAE-QKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ   78 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3778888899999999999998864221222 3356779999999999999998887766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
3pfy_A	185	OTU domain-containing protein 5; structural genomi	2e-30
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	3e-21
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	2e-18
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	1e-17
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	4e-04
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	5e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-04

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score =  112 bits (280), Expect = 2e-30
 Identities = 36/190 (18%), Positives = 58/190 (30%), Gaps = 28/190 (14%)

Query: 132 QHDQAKPSKGTKRREKRAQQEAAREQRIQ---EEQSNIVSDRTVEDEKLEKKLGPLGLTV 188
            H     S       + A   +  E        E  +  +    E    +      G  +
Sbjct: 2   HHHHHHSSGRENLYFQGAGYNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDKKGFII 61

Query: 189 NDIKPDGHCLYRAVEDQLAHLSGGEESAQSQV----------------ERFENYCKEVES 232
             +K DG CL+RAV DQ+       E  +                   E F  Y      
Sbjct: 62  KQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRK 121

Query: 233 TAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGL 292
               G  +E++A+     + + +Y  S   +            +    I +SYHR+    
Sbjct: 122 NNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQ----NEDEPIRVSYHRN---- 173

Query: 293 GEHYNSVIPI 302
             HYNSV+  
Sbjct: 174 -IHYNSVVNP 182

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 87.8 bits (217), Expect = 3e-21
 Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 27/137 (19%)

Query: 186 LTVNDIKPDGHCLYRAVEDQLAHLSGGE--------------------ESAQSQVERFEN 225
             +     DG+C Y ++ +                               A+      E+
Sbjct: 31  FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLED 90

Query: 226 YCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSY 285
           Y K + S   WG  LE   L   +   I+I++ +  D          G     +++ L +
Sbjct: 91  YLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGI--KFGDGDVFTAVNLLH 148

Query: 286 HRHAFGLGEHYNSVIPI 302
                    H++++  +
Sbjct: 149 SG-----QTHFDALRIL 160

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 81.3 bits (200), Expect = 2e-18
 Identities = 19/137 (13%), Positives = 42/137 (30%), Gaps = 27/137 (19%)

Query: 186 LTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVER--------------------FEN 225
             +     DG+C Y ++ +              +                        E+
Sbjct: 31  FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLED 90

Query: 226 YCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSY 285
           Y K + S   WG  LE   L   +   I+I++ +  D    +     G     +++ L +
Sbjct: 91  YLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEV--EAGIKFGDGDVFTAVNLLH 148

Query: 286 HRHAFGLGEHYNSVIPI 302
                    H++++  +
Sbjct: 149 SG-----QTHFDALRIL 160

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 78.8 bits (194), Expect = 1e-17
 Identities = 25/149 (16%), Positives = 54/149 (36%), Gaps = 36/149 (24%)

Query: 173 EDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQ---SQV--------- 220
             E      G   L+V+ +  D  CL+ A+   +      ++S +     V         
Sbjct: 7   STEMSIGGSGENVLSVHPVLDDNSCLFHAIAYGI----FKQDSVRDLREMVSKEVLNNPV 62

Query: 221 --------ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNG 272
                   +  ++Y + +    +WGG +E+  ++  L   I +      D++  K     
Sbjct: 63  KFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVV-----DIDAVK-IEKF 116

Query: 273 GSDSSGSSIILSYHRHAFGLGEHYNSVIP 301
             D   + I++ ++      G HY+S+  
Sbjct: 117 NEDKFDNYILILFN------GIHYDSLTM 139

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Length = 234

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 26/172 (15%), Positives = 56/172 (32%), Gaps = 29/172 (16%)

Query: 150 QQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDG--HCLYRAVEDQL- 206
            +E  + +    +  N +     E+ K           V  ++ DG    L +   DQ  
Sbjct: 68  SREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSA 127

Query: 207 -------------AHLSGGEESAQSQVER---FENYC-KEVESTAAWGGELELRALTHCL 249
                        A +    +  +  ++     +++C  EVE  A     +++ AL+  L
Sbjct: 128 SDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQAL 187

Query: 250 RKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 301
              + +    + D        +   +++  S+ L Y         HYN +  
Sbjct: 188 SIALQVE---YVDEMDTALNHHVFPEAATPSVYLLYK------TSHYNILYA 230

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 9/76 (11%)

Query: 223 FENYC-KEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSI 281
            + +C +EVE        + + AL   L   I +        E G    +   + S   +
Sbjct: 163 VKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVE--YMDRGEGGTTNPHIFPEGSEPKV 220

Query: 282 ILSYHRHAFGLGEHYN 297
            L Y         HY+
Sbjct: 221 YLLYR------PGHYD 230

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 33/202 (16%), Positives = 77/202 (38%), Gaps = 16/202 (7%)

Query: 36   QKKQETRDEMLSRHRKEISQLQNKETEL--KKAAAKGSKAEQKAKKKQVEEEISRLSAKL 93
             +     +EM  R   +  +L+    E+  +    +    + +A+KK++++++  L  +L
Sbjct: 905  TELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQL 964

Query: 94   REKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQ-- 151
             E+       L        EK   D  +K +    +I +    K +K  K  E+R     
Sbjct: 965  EEE-EAARQKL------QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

Query: 152  -EAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLS 210
               A E+   +  + + +       +LE +L     +  +++     + R +E + + L 
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK----IKRKLEGESSDLH 1073

Query: 211  GGEESAQSQVERFENYCKEVES 232
                  Q+Q+   +    + E 
Sbjct: 1074 EQIAELQAQIAELKAQLAKKEE 1095

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
3pfy_A	185	OTU domain-containing protein 5; structural genomi	100.0
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.96
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.94
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.94
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.84
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.82
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.71
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.68
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	98.25
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.12

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=100.00  E-value=5.2e-35  Score=258.59  Aligned_cols=129  Identities=25%  Similarity=0.371  Sum_probs=92.7

Q ss_pred             HHhccCCCchhHHHHHHHHhccCCceEeeeCCCCchHHHHHHHHHhcCCCCC----------------CcchhhhHhHHH
Q 022093          162 EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------------ESAQSQVERFEN  225 (302)
Q Consensus       162 e~~~~~~~r~~E~~~l~~~L~~~gL~i~~Ip~DGnCLFrAIadQL~~~~~~~----------------~fd~~~~~~fee  225 (302)
                      ++...+..+..|..-++..|+.+||.+++||+|||||||||++||++.+..+                .|.+|++++|++
T Consensus        35 ~~~~~~~~~~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~  114 (185)
T 3pfy_A           35 EAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTT  114 (185)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC------
T ss_pred             HhccCCCHHHHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            3444455688999888888899999999999999999999999999876543                188889999999


Q ss_pred             HHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEe--cCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccC
Q 022093          226 YCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEM--GKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP  301 (302)
Q Consensus       226 Y~~~m~~t~~WGG~lEL~ALS~~l~v~I~V~q~~~~~~~i--g~e~~~~~~~~~~~~I~L~Y~~h~ygLGeHYnSl~p  301 (302)
                      ||++|+++++|||+|||+|||++|+++|.||+.+++++.+  |.+.      ...++|+|+||+     |+|||||++
T Consensus       115 Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~~g~~~------~~~~~I~L~Y~~-----~~HYnSv~~  181 (185)
T 3pfy_A          115 YINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQ------NEDEPIRVSYHR-----NIHYNSVVN  181 (185)
T ss_dssp             -----------CCHHHHHHHHHHHTSCEEEESSCSSCSEEECTTSC------CTTSCEEEEEET-----TTEEEEEEC
T ss_pred             HHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEecCccC------CCCCEEEEEECC-----CCCcccccC
Confidence            9999999999999999999999999999999988765543  3222      236899999998     699999985

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.96  E-value=2.5e-30  Score=232.93  Aligned_cols=106  Identities=18%  Similarity=0.338  Sum_probs=90.7

Q ss_pred             ccCCceEeeeCCCCchHHHHHHHHHhcCCCCC----------------Ccch-hhhHhHHHHHHHhhcCCccCcHHHHHH
Q 022093          182 GPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------------ESAQ-SQVERFENYCKEVESTAAWGGELELRA  244 (302)
Q Consensus       182 ~~~gL~i~~Ip~DGnCLFrAIadQL~~~~~~~----------------~fd~-~~~~~feeY~~~m~~t~~WGG~lEL~A  244 (302)
                      ...||.+++||+|||||||||++|| +.+..+                .|.+ +++.+|++||++|+++++|||+|||+|
T Consensus        16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~A   94 (212)
T 3by4_A           16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGI   94 (212)
T ss_dssp             CCSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHH
T ss_pred             CCCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHH
Confidence            4458999999999999999999999 655443                1754 457899999999999999999999999


Q ss_pred             HHHhhcccEEEEeCCC-CceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccC
Q 022093          245 LTHCLRKHIMIYSGSF-PDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP  301 (302)
Q Consensus       245 LS~~l~v~I~V~q~~~-~~~~ig~e~~~~~~~~~~~~I~L~Y~~h~ygLGeHYnSl~p  301 (302)
                      ||++|+++|.||++++ +.+.||+++       ..++|+|+|+      |+|||||++
T Consensus        95 ls~~~~~~I~V~~~~~~~~~~~~~~~-------~~~~I~L~Y~------g~HYdsl~~  139 (212)
T 3by4_A           95 ISDALAVAIYVVDIDAVKIEKFNEDK-------FDNYILILFN------GIHYDSLTM  139 (212)
T ss_dssp             HHHHHTCEEEEEETTTTEEEEESTTT-------CSEEEEEEEC------SSCEEEEEE
T ss_pred             HHHHHCCCEEEEECCCCCeEEeCCCC-------CCCeEEEEEc------CCcceEEec
Confidence            9999999999999864 566788654       2679999997      799999985

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.94  E-value=1.7e-27  Score=210.46  Aligned_cols=105  Identities=19%  Similarity=0.347  Sum_probs=84.2

Q ss_pred             ceEeeeCCCCchHHHHHHHHHhcC-CCC-----CC--------------cchhhhHhHHHHHHHhhcCCccCcHHHHHHH
Q 022093          186 LTVNDIKPDGHCLYRAVEDQLAHL-SGG-----EE--------------SAQSQVERFENYCKEVESTAAWGGELELRAL  245 (302)
Q Consensus       186 L~i~~Ip~DGnCLFrAIadQL~~~-~~~-----~~--------------fd~~~~~~feeY~~~m~~t~~WGG~lEL~AL  245 (302)
                      +.+..||||||||||||++||+++ +..     +.              -+-+++.+|++||++|+++++|||++||+||
T Consensus        31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~~~~~~~~~~Y~~~m~~~~~WGg~iEL~Al  110 (185)
T 3phx_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASML  110 (185)
T ss_dssp             EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTHHHHCCCHHHHHHHHTSTTCCCBHHHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHhhhcCCCHHHHHHHhhCCCccCcHHHHHHH
Confidence            778899999999999999999986 332     21              1112357899999999999999999999999


Q ss_pred             HHhhcccEEEEeCCCCc-----eEecCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccCC
Q 022093          246 THCLRKHIMIYSGSFPD-----VEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  302 (302)
Q Consensus       246 S~~l~v~I~V~q~~~~~-----~~ig~e~~~~~~~~~~~~I~L~Y~~h~ygLGeHYnSl~p~  302 (302)
                      |++|+++|.||+++++.     +.+|++.       ..++|+|+|++     |+|||||+|+
T Consensus       111 s~~~~v~I~V~~~d~~~~~~~i~~f~~~~-------~~~~I~L~Y~g-----~~HYdsl~~~  160 (185)
T 3phx_A          111 AKEMGITIIIWTVAASDEVEAGIKFGDGD-------VFTAVNLLHSG-----QTHFDALRIL  160 (185)
T ss_dssp             HHHHCCCEEEEEC--CCBCCEEEEESSCC-------TTTSEEEEEET-----TTEEEEEEEC
T ss_pred             HHHHCCcEEEEEecCCCCceEEEEcCCCC-------CCCEEEEEECC-----CcCchhceEC
Confidence            99999999999977654     3465442       26899999984     5999999874

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.94  E-value=2e-27  Score=214.99  Aligned_cols=105  Identities=18%  Similarity=0.321  Sum_probs=85.7

Q ss_pred             ceEeeeCCCCchHHHHHHHHHhcCC-CC-----CC--------c------chhhhHhHHHHHHHhhcCCccCcHHHHHHH
Q 022093          186 LTVNDIKPDGHCLYRAVEDQLAHLS-GG-----EE--------S------AQSQVERFENYCKEVESTAAWGGELELRAL  245 (302)
Q Consensus       186 L~i~~Ip~DGnCLFrAIadQL~~~~-~~-----~~--------f------d~~~~~~feeY~~~m~~t~~WGG~lEL~AL  245 (302)
                      +.+..||||||||||||++||++.. ..     +.        |      +-+++.+|++||++|+++++|||++||+||
T Consensus        31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~~~~~~~feeY~~~m~~~g~WGG~iEL~Al  110 (219)
T 3phu_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASML  110 (219)
T ss_dssp             EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHHHHHCCCHHHHHHHHHSTTCCCCHHHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhhhhcCCCHHHHHHHhcCCCccCCHHHHHHH
Confidence            7788999999999999999998863 22     21        1      112357899999999999999999999999


Q ss_pred             HHhhcccEEEEeCCCC-----ceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccCC
Q 022093          246 THCLRKHIMIYSGSFP-----DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  302 (302)
Q Consensus       246 S~~l~v~I~V~q~~~~-----~~~ig~e~~~~~~~~~~~~I~L~Y~~h~ygLGeHYnSl~p~  302 (302)
                      |++|+++|+||+.+++     .+.||++.       ..++|+|+|++     |+|||||+|+
T Consensus       111 S~~~~v~I~V~~~d~~g~~~~i~~fge~~-------~~~~I~L~Y~g-----~~HYdSL~~~  160 (219)
T 3phu_A          111 AKEMGITIIIWTVAASDEVEAGIKFGDGD-------VFTAVNLLHSG-----QTHFDALRIL  160 (219)
T ss_dssp             HHHTTCCEEEEEESSSSBEEEEEEESSCC-------TTTSEEEEEET-----TTEEEEEEEC
T ss_pred             HHHhCCCEEEEEecCCCCceeEEEecCCC-------CCCeEEEEECC-----CcCchhheEC
Confidence            9999999999998776     33566542       26899999984     5999999874

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.84  E-value=1.4e-21  Score=178.28  Aligned_cols=78  Identities=21%  Similarity=0.301  Sum_probs=60.6

Q ss_pred             cchhhhH--hHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceE-ecCCcCCCCCCCCCCeEEEEeccCCC
Q 022093          215 SAQSQVE--RFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVE-MGKEYSNGGSDSSGSSIILSYHRHAF  290 (302)
Q Consensus       215 fd~~~~~--~feeY~~-~m~~t~~WGG~lEL~ALS~~l~v~I~V~q~~~~~~~-ig~e~~~~~~~~~~~~I~L~Y~~h~y  290 (302)
                      |.+|+++  +|++||. .|+.+++|||||||+|||++|++||.|++.+++... ....|..    +..+.|+|+|++   
T Consensus       150 f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~----~~~~~I~LlY~p---  222 (234)
T 1tff_A          150 FRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPE----AATPSVYLLYKT---  222 (234)
T ss_dssp             HGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCC----CSSCSEEEEEET---
T ss_pred             HhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCC----CCCCeEEEEECC---
Confidence            6677654  8999999 799999999999999999999999999998876522 2234432    346789999994   


Q ss_pred             CCCCccccccCC
Q 022093          291 GLGEHYNSVIPI  302 (302)
Q Consensus       291 gLGeHYnSl~p~  302 (302)
                         +|||+|+|.
T Consensus       223 ---gHYdily~~  231 (234)
T 1tff_A          223 ---SHYNILYAA  231 (234)
T ss_dssp             ---TEEEEEEEC
T ss_pred             ---CCceecccC
Confidence               699999984

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.82  E-value=9.3e-21  Score=172.73  Aligned_cols=77  Identities=17%  Similarity=0.235  Sum_probs=61.1

Q ss_pred             cchhhhH--hHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCce--EecCCcCCCCCCCCCCeEEEEeccCC
Q 022093          215 SAQSQVE--RFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFPDV--EMGKEYSNGGSDSSGSSIILSYHRHA  289 (302)
Q Consensus       215 fd~~~~~--~feeY~~-~m~~t~~WGG~lEL~ALS~~l~v~I~V~q~~~~~~--~ig~e~~~~~~~~~~~~I~L~Y~~h~  289 (302)
                      |.+|+++  +|++||. .|+.+++||||+||+|||++|++||.|++.+++..  ..+..|..    +..++|+|+|++  
T Consensus       153 f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~----~~~p~I~LlY~p--  226 (234)
T 2zfy_A          153 FEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE----GSEPKVYLLYRP--  226 (234)
T ss_dssp             HGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEEST----TCCCSEEEEEET--
T ss_pred             HhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCC----CCCCeEEEEECC--
Confidence            6667644  8999997 69999999999999999999999999999876531  12234432    246789999995  


Q ss_pred             CCCCCccccccC
Q 022093          290 FGLGEHYNSVIP  301 (302)
Q Consensus       290 ygLGeHYnSl~p  301 (302)
                          +|||+|+|
T Consensus       227 ----gHYdiLy~  234 (234)
T 2zfy_A          227 ----GHYDILYK  234 (234)
T ss_dssp             ----TEEEEEEC
T ss_pred             ----CCcccCCC
Confidence                59999998

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.71  E-value=5.9e-18  Score=158.04  Aligned_cols=81  Identities=17%  Similarity=0.198  Sum_probs=60.5

Q ss_pred             cchhhh--HhHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCc-eEec-CC-cCCCCCCCCCCeEEEEeccC
Q 022093          215 SAQSQV--ERFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFPD-VEMG-KE-YSNGGSDSSGSSIILSYHRH  288 (302)
Q Consensus       215 fd~~~~--~~feeY~~-~m~~t~~WGG~lEL~ALS~~l~v~I~V~q~~~~~-~~ig-~e-~~~~~~~~~~~~I~L~Y~~h  288 (302)
                      |.+|+.  .++++||. .|+.++.|||||+|+|||++|+++|.|+..++.. ..+. .. |.. +.....+.|+|.|.. 
T Consensus       188 f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp~-~~~~~~p~I~LLYrp-  265 (284)
T 4dhi_B          188 YAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPS-DDQQIAPEITLLYRP-  265 (284)
T ss_dssp             HGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEESC-CCSCCCCSEEEEEET-
T ss_pred             HHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCCC-CCCCCCCEEEEeecC-
Confidence            777774  48999999 7999999999999999999999999999876421 1111 11 311 111234789999994 


Q ss_pred             CCCCCCccccccCC
Q 022093          289 AFGLGEHYNSVIPI  302 (302)
Q Consensus       289 ~ygLGeHYnSl~p~  302 (302)
                           .|||.|+|.
T Consensus       266 -----gHYDILY~~  274 (284)
T 4dhi_B          266 -----GHYDVIYKK  274 (284)
T ss_dssp             -----TEEEEEEEC
T ss_pred             -----CCccccccC
Confidence                 799999973

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.68  E-value=2.7e-17  Score=160.15  Aligned_cols=77  Identities=17%  Similarity=0.247  Sum_probs=59.5

Q ss_pred             cchhhhH--hHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCC-ceEec-CCcCCCCCCCCCCeEEEEeccCC
Q 022093          215 SAQSQVE--RFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFP-DVEMG-KEYSNGGSDSSGSSIILSYHRHA  289 (302)
Q Consensus       215 fd~~~~~--~feeY~~-~m~~t~~WGG~lEL~ALS~~l~v~I~V~q~~~~-~~~ig-~e~~~~~~~~~~~~I~L~Y~~h~  289 (302)
                      |.+|+++  ++++||. .|..+++|||||+|+|||++|+++|.|+..++. ...+. ..|.    .+..+.|+|.|.+  
T Consensus       318 f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~----~~~~~~I~LLYrP--  391 (399)
T 4ddg_A          318 FEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFP----EGSEPKVYLLYRP--  391 (399)
T ss_dssp             HGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETT----TTCCCCCEEEEET--
T ss_pred             HhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCC----CCCCCEEEEEEcC--
Confidence            5566643  7999999 899999999999999999999999999876552 11111 1121    1347889999997  


Q ss_pred             CCCCCccccccC
Q 022093          290 FGLGEHYNSVIP  301 (302)
Q Consensus       290 ygLGeHYnSl~p  301 (302)
                          .|||.|+|
T Consensus       392 ----gHYDiLY~  399 (399)
T 4ddg_A          392 ----GHYDILYK  399 (399)
T ss_dssp             ----BEEEEEEC
T ss_pred             ----CccccCCC
Confidence                59999987

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=98.25  E-value=4.5e-06  Score=79.89  Aligned_cols=112  Identities=19%  Similarity=0.330  Sum_probs=71.3

Q ss_pred             CCceEeeeCCCCchHHHHHHHHHhcCCCCCC----------------------------cchh-------h----hHhHH
Q 022093          184 LGLTVNDIKPDGHCLYRAVEDQLAHLSGGEE----------------------------SAQS-------Q----VERFE  224 (302)
Q Consensus       184 ~gL~i~~Ip~DGnCLFrAIadQL~~~~~~~~----------------------------fd~~-------~----~~~fe  224 (302)
                      .-|......||||||.+|++..+++-++...                            +.+|       .    ..+|+
T Consensus       110 ~rL~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~  189 (390)
T 3dkb_A          110 RKLVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWD  189 (390)
T ss_dssp             CCEEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHH
T ss_pred             cceEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHH
Confidence            3577789999999999999999999776531                            0011       1    23444


Q ss_pred             HHHHHhhcCCc-------c--CcHHHHHHHHHhhcccEEEEeCC-------CC---ceEecCCcCC---CCCCCCCCeEE
Q 022093          225 NYCKEVESTAA-------W--GGELELRALTHCLRKHIMIYSGS-------FP---DVEMGKEYSN---GGSDSSGSSII  282 (302)
Q Consensus       225 eY~~~m~~t~~-------W--GG~lEL~ALS~~l~v~I~V~q~~-------~~---~~~ig~e~~~---~~~~~~~~~I~  282 (302)
                      .-+...+....       +  =-++-+-+||+++++||+||...       |.   ++.||.-|..   +.+.....||.
T Consensus       190 ~Iv~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~  269 (390)
T 3dkb_A          190 NLIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIV  269 (390)
T ss_dssp             HHHHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEE
T ss_pred             HHHHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceE
Confidence            44433322111       1  12677999999999999999632       11   1223322321   12345678999


Q ss_pred             EEeccCCCCCCCccccccC
Q 022093          283 LSYHRHAFGLGEHYNSVIP  301 (302)
Q Consensus       283 L~Y~~h~ygLGeHYnSl~p  301 (302)
                      |+|.+      .||.+|++
T Consensus       270 LgY~s------~HFsaLV~  282 (390)
T 3dkb_A          270 LGYDS------HHFVPLVT  282 (390)
T ss_dssp             EEECS------SCEEEEEE
T ss_pred             EEecc------Cceeeeee
Confidence            99997      69999886

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=98.12  E-value=5.6e-06  Score=80.45  Aligned_cols=111  Identities=19%  Similarity=0.213  Sum_probs=74.1

Q ss_pred             CceEeeeCCCCchHHHHHHHHHhcCCCCCC-------------------------------c-chhh--h----HhHHHH
Q 022093          185 GLTVNDIKPDGHCLYRAVEDQLAHLSGGEE-------------------------------S-AQSQ--V----ERFENY  226 (302)
Q Consensus       185 gL~i~~Ip~DGnCLFrAIadQL~~~~~~~~-------------------------------f-d~~~--~----~~feeY  226 (302)
                      .|......||||||-+|++..+++-++...                               | -.|+  +    .+|+.-
T Consensus       188 rL~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~i  267 (454)
T 3zrh_A          188 RLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFI  267 (454)
T ss_dssp             CEEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHH
T ss_pred             ceeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHH
Confidence            367788999999999999999999776421                               1 0111  2    345554


Q ss_pred             HHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCC---------CceEecCCcCC---CCCCCCCCeEEEEeccCCCCCCC
Q 022093          227 CKEVESTAAWGGELELRALTHCLRKHIMIYSGSF---------PDVEMGKEYSN---GGSDSSGSSIILSYHRHAFGLGE  294 (302)
Q Consensus       227 ~~~m~~t~~WGG~lEL~ALS~~l~v~I~V~q~~~---------~~~~ig~e~~~---~~~~~~~~~I~L~Y~~h~ygLGe  294 (302)
                      +.-.+.++.==-++-+.+||+++++||+||....         .++.||.-|..   +.+.....||.|+|.+      .
T Consensus       268 v~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~------g  341 (454)
T 3zrh_A          268 LSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR------G  341 (454)
T ss_dssp             HHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET------T
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc------c
Confidence            5544555544446779999999999999998532         11223322221   1233456899999997      5


Q ss_pred             ccccccC
Q 022093          295 HYNSVIP  301 (302)
Q Consensus       295 HYnSl~p  301 (302)
                      ||.++++
T Consensus       342 HFsaLV~  348 (454)
T 3zrh_A          342 HFSALVA  348 (454)
T ss_dssp             EEEEEEE
T ss_pred             ceeeeee
Confidence            9999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	8e-08

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 8e-08
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 221 ERFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGS 279
              +++C  EVE  A     +++ AL+  L   + +    + D        +   +++  
Sbjct: 152 MDIKDFCTHEVEPMATECDHIQITALSQALSIALQVE---YVDEMDTALNHHVFPEAATP 208

Query: 280 SIILSYHRHAFGLGEHYNSVIP 301
           S+ L Y         HYN +  
Sbjct: 209 SVYLLYK------TSHYNILYA 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.78

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.2e-20  Score=163.98  Aligned_cols=78  Identities=18%  Similarity=0.296  Sum_probs=57.8

Q ss_pred             cchhhh--HhHHHHHHH-hhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEec-CCcCCCCCCCCCCeEEEEeccCCC
Q 022093          215 SAQSQV--ERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMG-KEYSNGGSDSSGSSIILSYHRHAF  290 (302)
Q Consensus       215 fd~~~~--~~feeY~~~-m~~t~~WGG~lEL~ALS~~l~v~I~V~q~~~~~~~ig-~e~~~~~~~~~~~~I~L~Y~~h~y  290 (302)
                      |.+|++  .++++||.+ |..+++|||++||.|||++|+++|.|+..+.+...+. ..|    +....++|+|.|.    
T Consensus       144 y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~----~~~~~~~I~Lly~----  215 (228)
T d1tffa_         144 FRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVF----PEAATPSVYLLYK----  215 (228)
T ss_dssp             HGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCC----CCCSSCSEEEEEE----
T ss_pred             HHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccC----CCCCCCEEEEEeC----
Confidence            455553  478999986 9999999999999999999999999998876543322 122    1234678999998    


Q ss_pred             CCCCccccccCC
Q 022093          291 GLGEHYNSVIPI  302 (302)
Q Consensus       291 gLGeHYnSl~p~  302 (302)
                        +.|||+|+|.
T Consensus       216 --pgHYdiLY~~  225 (228)
T d1tffa_         216 --TSHYNILYAA  225 (228)
T ss_dssp             --TTEEEEEEEC
T ss_pred             --CCCcccCccC
Confidence              4699999984