Citrus Sinensis ID: 022114

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSATSEQAAAATAQKPSKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVILHAL
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccccccccccccccccHHHHHHHHccccccEEEEHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcc
cHHHHHHHcHHHHHHcccccccccccccccccccccccEEEEEEEEcccccccccccccccccccHHHHHHccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEHHHHcccccEccccccEEEEEEHHHHHHHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHcHHHHHHHHHHHHHHHHHHcc
MAAEMALVkpiskfstiatttkprfsypkatctslstrfctiKMSATSEQAAAAtaqkpskksnktaiketlltprfyttdfDEMETLFNTEINKKLNQAEFEALLQEFKtdynqthfvRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKarkytffkpkFIFYATYLSEKIGYWRYITIYRHlkanpefqcypifkyfenwcqdenrhGDFFSALMKAQPQFLNDWKAKLWARFFCLSVILHAL
maaemalvkpiskfstiatttkprfsypkatctsLSTRFCTIKMSATSEQAAaataqkpskksnktaiketlltprfyttdFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVILHAL
MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIkmsatseqaaaataqkpskksNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVILHAL
**********ISKFSTIATTTKPRFSYPKATCTSLSTRFCTIK*************************KETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVILH**
*******VKPISKFS********************************************************LLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVILHAL
MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSA*******************TAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVILHAL
*****A*VK*ISKFSTIATT****************TRFCTIKMSATS****************KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVILHAL
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
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MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSATSEQAAAATAQKPSKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVILHAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query302 2.2.26 [Sep-21-2011]
Q945B7 405 Magnesium-protoporphyrin N/A no 0.947 0.706 0.875 1e-146
Q6SJV8 405 Magnesium-protoporphyrin N/A no 0.947 0.706 0.845 1e-140
Q9M591 409 Magnesium-protoporphyrin yes no 0.956 0.706 0.842 1e-139
Q5EFU4 417 Magnesium-protoporphyrin N/A no 0.980 0.709 0.782 1e-132
Q9AR22 407 Magnesium-protoporphyrin N/A no 0.874 0.648 0.722 1e-116
Q9LD46 407 Magnesium-protoporphyrin N/A no 0.867 0.643 0.667 1e-103
Q8YRZ2 358 Magnesium-protoporphyrin yes no 0.754 0.636 0.733 1e-102
Q118B4 358 Magnesium-protoporphyrin yes no 0.754 0.636 0.721 1e-101
P72584 358 Magnesium-protoporphyrin N/A no 0.788 0.664 0.700 1e-100
Q6B8U1 349 Magnesium-protoporphyrin N/A no 0.771 0.667 0.701 1e-98
>sp|Q945B7|CRD1_EUPES Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Euphorbia esula GN=CRD1 PE=3 SV=1 Back     alignment and function desciption
 Score =  518 bits (1335), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 260/297 (87%), Positives = 266/297 (89%), Gaps = 11/297 (3%)

Query: 1   MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSATSEQAAAATAQKPS 60
           MAAEMALVKPI+          P+F  P  T +S S    TIKMSATS+     TA KPS
Sbjct: 1   MAAEMALVKPIT----------PKFINPMRTFSSSSKF-STIKMSATSQSNTTTTATKPS 49

Query: 61  KKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVR 120
           KK NK  I ETLLTPRFYTTDFDEMETLFNTEINKKLNQ+EFEALLQEFKTDYNQTHFVR
Sbjct: 50  KKGNKKEINETLLTPRFYTTDFDEMETLFNTEINKKLNQSEFEALLQEFKTDYNQTHFVR 109

Query: 121 NKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSR 180
           NKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSR
Sbjct: 110 NKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSR 169

Query: 181 DEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRH 240
           DEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRH
Sbjct: 170 DEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRH 229

Query: 241 LKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSV 297
           LK NPE+QCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSV
Sbjct: 230 LKENPEYQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSV 286
Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME).
Euphorbia esula (taxid: 3993)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 8EC: 1
>sp|Q6SJV8|CRD1_GOSHI Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Gossypium hirsutum GN=CRD1 PE=2 SV=2 Back     alignment and function description
>sp|Q9M591|CRD1_ARATH Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Arabidopsis thaliana GN=CRD1 PE=2 SV=2 Back     alignment and function description
>sp|Q5EFU4|CRD1_HORVU Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Hordeum vulgare GN=CRD1 PE=1 SV=1 Back     alignment and function description
>sp|Q9AR22|CTH1_CHLRE Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 2, chloroplastic OS=Chlamydomonas reinhardtii GN=CTH1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LD46|CRD1_CHLRE Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1, chloroplastic OS=Chlamydomonas reinhardtii GN=CRD1 PE=2 SV=1 Back     alignment and function description
>sp|Q8YRZ2|ACSF3_NOSS1 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 3 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=acsF3 PE=3 SV=1 Back     alignment and function description
>sp|Q118B4|ACSF_TRIEI Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Trichodesmium erythraeum (strain IMS101) GN=acsF PE=3 SV=1 Back     alignment and function description
>sp|P72584|ACSF1_SYNY3 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=acsF1 PE=3 SV=1 Back     alignment and function description
>sp|Q6B8U1|ACSF_GRATL Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Gracilaria tenuistipitata var. liui GN=acsF PE=3 SV=1 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query302
TAIR|locus:2080560 409 CRD1 "COPPER RESPONSE DEFECT 1 0.956 0.706 0.808 2.9e-126
TAIR|locus:2080560 CRD1 "COPPER RESPONSE DEFECT 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
 Identities = 241/298 (80%), Positives = 252/298 (84%)

Query:     1 MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIXXXXXXXXXXX-XXXXXX 59
             MAAEMALVKPISKFS+      P+ S P    +    RF T+                  
Sbjct:     1 MAAEMALVKPISKFSS------PKLSNPSKFLSG--RRFSTVIRMSASSSPPPPTTATSK 52

Query:    60 XXXXNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFV 119
                  K  I+E+LLTPRFYTTDF+EME LFNTEINK LN+AEFEALLQEFKTDYNQTHFV
Sbjct:    53 SKKGTKKEIQESLLTPRFYTTDFEEMEQLFNTEINKNLNEAEFEALLQEFKTDYNQTHFV 112

Query:   120 RNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS 179
             RNKEFKEAADK+QGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS
Sbjct:   113 RNKEFKEAADKLQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS 172

Query:   180 RDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 239
             RDEARHAGFLNKGLSDFN ALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR
Sbjct:   173 RDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 232

Query:   240 HLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSV 297
             HLK NPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDW+AKLW+RFFCLSV
Sbjct:   233 HLKENPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWQAKLWSRFFCLSV 290


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      302       281   0.00083  115 3  11 22  0.42    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  214 KB (2118 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.65u 0.10s 22.75t   Elapsed:  00:00:02
  Total cpu time:  22.65u 0.10s 22.75t   Elapsed:  00:00:02
  Start:  Sat May 11 06:22:11 2013   End:  Sat May 11 06:22:13 2013
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015979 "photosynthesis" evidence=IEA
GO:0015995 "chlorophyll biosynthetic process" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0046914 "transition metal ion binding" evidence=IEA
GO:0048529 "magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity" evidence=IEA;NAS;IMP
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0003677 "DNA binding" evidence=TAS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009706 "chloroplast inner membrane" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA
GO:0009416 "response to light stimulus" evidence=RCA
GO:0009657 "plastid organization" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0015994 "chlorophyll metabolic process" evidence=RCA
GO:0019216 "regulation of lipid metabolic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0031408 "oxylipin biosynthetic process" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2ISZ6ACSF_RHOP21, ., 1, 4, ., 1, 3, ., 8, 10.50770.82110.6794yesno
A3PD22ACSF_PROM01, ., 1, 4, ., 1, 3, ., 8, 10.53760.80460.6230yesno
A5GKR3ACSF_SYNPW1, ., 1, 4, ., 1, 3, ., 8, 10.60930.81450.6833yesno
Q6SJV8CRD1_GOSHI1, ., 1, 4, ., 1, 3, ., 8, 10.84510.94700.7061N/Ano
Q0IAL0ACSF_SYNS31, ., 1, 4, ., 1, 3, ., 8, 10.63930.79130.6638yesno
Q132P2ACSF_RHOPS1, ., 1, 4, ., 1, 3, ., 8, 10.50590.79470.6539yesno
P72584ACSF1_SYNY31, ., 1, 4, ., 1, 3, ., 8, 10.70040.78800.6648N/Ano
Q9M591CRD1_ARATH1, ., 1, 4, ., 1, 3, ., 8, 10.84220.95690.7066yesno
Q7V1M1ACSF_PROMP1, ., 1, 4, ., 1, 3, ., 8, 10.53400.80460.6230yesno
Q8YRZ2ACSF3_NOSS11, ., 1, 4, ., 1, 3, ., 8, 10.73390.75490.6368yesno
Q6B8U1ACSF_GRATL1, ., 1, 4, ., 1, 3, ., 8, 10.70160.77150.6676N/Ano
Q7NFA1ACSF_GLOVI1, ., 1, 4, ., 1, 3, ., 8, 10.58190.79130.6907yesno
Q3AK18ACSF_SYNSC1, ., 1, 4, ., 1, 3, ., 8, 10.60930.80130.6797yesno
A4YNQ1ACSF_BRASO1, ., 1, 4, ., 1, 3, ., 8, 10.54460.75160.6430yesno
B3Q7D4ACSF_RHOPT1, ., 1, 4, ., 1, 3, ., 8, 10.52690.76820.6356yesno
Q118B4ACSF_TRIEI1, ., 1, 4, ., 1, 3, ., 8, 10.72100.75490.6368yesno
Q31AS9ACSF_PROM91, ., 1, 4, ., 1, 3, ., 8, 10.54120.80460.6230yesno
Q945B7CRD1_EUPES1, ., 1, 4, ., 1, 3, ., 8, 10.87540.94700.7061N/Ano
Q5MZZ2ACSF_SYNP61, ., 1, 4, ., 1, 3, ., 8, 10.61940.78800.6648yesno
Q6N9J7ACSF_RHOPA1, ., 1, 4, ., 1, 3, ., 8, 10.52690.76820.6356yesno
A5GU20ACSF_SYNR31, ., 1, 4, ., 1, 3, ., 8, 10.61530.80130.6722yesno
A5EQ73ACSF_BRASB1, ., 1, 4, ., 1, 3, ., 8, 10.54890.75160.6430yesno
Q5EFU4CRD1_HORVU1, ., 1, 4, ., 1, 3, ., 8, 10.78260.98010.7098N/Ano
Q9AR22CTH1_CHLRE1, ., 1, 4, ., 1, 3, ., 8, 10.72220.87410.6486N/Ano
Q8DJ05ACSF1_THEEB1, ., 1, 4, ., 1, 3, ., 8, 10.58900.78800.6263yesno
A2BR98ACSF_PROMS1, ., 1, 4, ., 1, 3, ., 8, 10.53400.80460.6230yesno
A2BWG6ACSF_PROM51, ., 1, 4, ., 1, 3, ., 8, 10.53040.80460.6230yesno
Q7U6Y8ACSF_SYNPX1, ., 1, 4, ., 1, 3, ., 8, 10.61320.80130.6797yesno
Q31LY2ACSF_SYNE71, ., 1, 4, ., 1, 3, ., 8, 10.61940.78800.6648yesno
A8G4Z1ACSF_PROM21, ., 1, 4, ., 1, 3, ., 8, 10.53570.79800.6179yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.13.810.991
3rd Layer1.14.130.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_VI000236
magnesium protoporphyrin IX monomethyl ester (oxidative) cyclase (EC-1.14.13.81) (405 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_VI0422
SubName- Full=Putative uncharacterized protein; (1365 aa)
• ••  • 0.760
grail3.0015033802
magnesium protoporphyrin IX methyltransferase (182 aa)
• •• •• 0.649
estExt_Genewise1_v1.C_LG_XVI3731
chlorophyll synthetase (EC-2.5.1.62) (329 aa)
  ••  • 0.544
estExt_fgenesh4_pg.C_LG_VI0825
SubName- Full=Putative uncharacterized protein; (372 aa)
  ••  • 0.540
eugene3.00120625
SubName- Full=Putative uncharacterized protein; (470 aa)
  ••  • 0.485
gw1.IV.2852.1
SubName- Full=Putative uncharacterized protein; (422 aa)
  ••  • 0.448
estExt_fgenesh4_pm.C_LG_XI0237
hypothetical protein (421 aa)
  ••  • 0.446
gw1.IX.3663.1
hypothetical protein (741 aa)
  ••  • 0.445
gw1.66.323.1
geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)
  •   • 0.445
gw1.4339.1.1
annotation not avaliable (413 aa)
  •   • 0.445

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query302
PLN02508 357 PLN02508, PLN02508, magnesium-protoporphyrin IX mo 0.0
cd01047323 cd01047, ACSF, Aerobic Cyclase System Fe-containin 1e-161
PRK13654 355 PRK13654, PRK13654, magnesium-protoporphyrin IX mo 1e-160
TIGR02029337 TIGR02029, AcsF, magnesium-protoporphyrin IX monom 1e-146
CHL00185 351 CHL00185, ycf59, magnesium-protoporphyrin IX monom 1e-144
pfam02915137 pfam02915, Rubrerythrin, Rubrerythrin 1e-39
cd00657130 cd00657, Ferritin_like, Ferritin-like superfamily 9e-07
>gnl|CDD|178124 PLN02508, PLN02508, magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase Back     alignment and domain information 
 Score =  512 bits (1321), Expect = 0.0
 Identities = 215/238 (90%), Positives = 226/238 (94%)

Query: 60  SKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFV 119
            +K  K AIKETLLTPRFYTTDFDEME LFNTEINK L+ AEFEALLQEFKTDYNQTHFV
Sbjct: 1   MRKGIKEAIKETLLTPRFYTTDFDEMEQLFNTEINKNLDMAEFEALLQEFKTDYNQTHFV 60

Query: 120 RNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS 179
           RN+EFK AADK+QGPLRQIF+EFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIF+LMS
Sbjct: 61  RNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMS 120

Query: 180 RDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 239
           RDEARHAGFLNK LSDFN ALDLGFLTK RKYTFFKPKFIFYATYLSEKIGYWRYITIYR
Sbjct: 121 RDEARHAGFLNKALSDFNLALDLGFLTKNRKYTFFKPKFIFYATYLSEKIGYWRYITIYR 180

Query: 240 HLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSV 297
           HL+ANP++Q YPIFKYFENWCQDENRHGDFFSAL+KAQPQFLNDWKAKLW+RFFCLSV
Sbjct: 181 HLQANPDYQLYPIFKYFENWCQDENRHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSV 238

Length = 357
>gnl|CDD|153106 cd01047, ACSF, Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain Back     alignment and domain information
>gnl|CDD|237458 PRK13654, PRK13654, magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>gnl|CDD|131084 TIGR02029, AcsF, magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>gnl|CDD|177087 CHL00185, ycf59, magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>gnl|CDD|217284 pfam02915, Rubrerythrin, Rubrerythrin Back     alignment and domain information
>gnl|CDD|153097 cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 302
PLN02508 357 magnesium-protoporphyrin IX monomethyl ester [oxid 100.0
PRK13654 355 magnesium-protoporphyrin IX monomethyl ester cycla 100.0
CHL00185 351 ycf59 magnesium-protoporphyrin IX monomethyl ester 100.0
TIGR02029337 AcsF magnesium-protoporphyrin IX monomethyl ester 100.0
cd01047323 ACSF Aerobic Cyclase System Fe-containing subunit 100.0
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 99.71
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 98.89
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 97.27
cd01046123 Rubrerythrin_like rubrerythrin-like, diiron-bindin 96.66
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 96.51
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 95.96
PF13668137 Ferritin_2: Ferritin-like domain 95.82
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 95.76
cd07908154 Mn_catalase_like Manganese catalase-like protein, 95.75
cd00907153 Bacterioferritin Bacterioferritin, ferritin-like d 95.09
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 94.82
cd01049288 RNRR2 Ribonucleotide Reductase, R2/beta subunit, f 94.19
PRK10635158 bacterioferritin; Provisional 93.2
PF00210142 Ferritin: Ferritin-like domain; InterPro: IPR00833 92.32
cd07911280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 92.28
cd07911280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 92.17
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 91.56
cd01050297 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like 91.55
COG1633176 Uncharacterized conserved protein [Function unknow 91.36
PRK08326311 ribonucleotide-diphosphate reductase subunit beta; 91.23
PF00268281 Ribonuc_red_sm: Ribonucleotide reductase, small ch 91.04
cd01052148 DPSL DPS-like protein, ferritin-like diiron-bindin 90.6
PRK07209369 ribonucleotide-diphosphate reductase subunit beta; 90.59
PF11583304 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_ 89.39
cd01049288 RNRR2 Ribonucleotide Reductase, R2/beta subunit, f 89.31
cd01055156 Nonheme_Ferritin nonheme-containing ferritins. Non 89.0
cd07908154 Mn_catalase_like Manganese catalase-like protein, 88.99
PF00268281 Ribonuc_red_sm: Ribonucleotide reductase, small ch 87.67
PRK09614324 nrdF ribonucleotide-diphosphate reductase subunit 87.44
COG0208348 NrdF Ribonucleotide reductase, beta subunit [Nucle 87.26
cd01042165 DMQH Demethoxyubiquinone hydroxylase, ferritin-lik 87.12
PRK09614324 nrdF ribonucleotide-diphosphate reductase subunit 86.26
PF03405330 FA_desaturase_2: Fatty acid desaturase; InterPro: 83.63
PF13668137 Ferritin_2: Ferritin-like domain 83.11
PLN02492324 ribonucleoside-diphosphate reductase 82.81
PLN02492324 ribonucleoside-diphosphate reductase 82.64
PTZ00211330 ribonucleoside-diphosphate reductase small subunit 82.22
PRK127751006 putative trifunctional 2-polyprenylphenol hydroxyl 81.48
PTZ00211330 ribonucleoside-diphosphate reductase small subunit 80.46
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase Back     alignment and domain information 
Probab=100.00  E-value=1.7e-150  Score=1055.44  Aligned_cols=242  Identities=89%  Similarity=1.428  Sum_probs=240.3

Q ss_pred             CccchhhHHhhccCCCCccccChHHHhhhccccccccccHHHHHHHHHHHhhccCCcccccChhHHHHhhcCChHHHHHH
Q 022114           60 SKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIF  139 (302)
Q Consensus        60 ~~~~~k~a~~etlLtPRFYTTDFd~m~~lf~~eid~~~~r~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~~~r~~F  139 (302)
                      +++++|.|++||||||||||||||+|++|||++||++++|+||+||++|||+||||+|||||++|+++|++|||++|++|
T Consensus         1 ~~~~~k~~~~etlLTPRFYTTDF~~m~~l~~~~id~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~~~r~~F   80 (357)
T PLN02508          1 MRKGIKEAIKETLLTPRFYTTDFDEMEQLFNTEINKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQGPLRQIF   80 (357)
T ss_pred             CCccccchhhhcccCCccccccHHHHHhhccccCCCchhHHHHHHHHHHHHhCccccccccChhhccchhhCCHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchhh
Q 022114          140 VEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFI  219 (302)
Q Consensus       140 idFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~PkfI  219 (302)
                      |||||||||||||||||||||+||+|++||+|+|+|++||||||||||||||||+||||+||||||||+|+||||+||||
T Consensus        81 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df~l~lDLgfLtk~rkYTfF~PkfI  160 (357)
T PLN02508         81 IEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDFNLALDLGFLTKNRKYTFFKPKFI  160 (357)
T ss_pred             HHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHcCccccchhhcccCceeeeCccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHhhCccchhhhhhHHHHHHHHHHHhh
Q 022114          220 FYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVIL  299 (302)
Q Consensus       220 fYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmraqP~ll~g~~~kLW~RFFLLsVfa  299 (302)
                      |||||||||||||||||||||||+|||+||||||||||+||||||||||||+|||||||+||+||+|||||||||||||+
T Consensus       161 fYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~Fe~WCqDEnRHGd~Fa~lmraqP~ll~g~~~kLW~RFFLLsVfa  240 (357)
T PLN02508        161 FYATYLSEKIGYWRYITIYRHLQANPDYQLYPIFKYFENWCQDENRHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYV  240 (357)
T ss_pred             ehhhHhhhhhhhhhHhHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hc
Q 022114          300 HA  301 (302)
Q Consensus       300 Tm  301 (302)
                      ||
T Consensus       241 TM  242 (357)
T PLN02508        241 TM  242 (357)
T ss_pred             Hh
Confidence            99

>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>PF13668 Ferritin_2: Ferritin-like domain Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK10635 bacterioferritin; Provisional Back     alignment and domain information
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms [] Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1 Back     alignment and domain information
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A Back     alignment and domain information
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01055 Nonheme_Ferritin nonheme-containing ferritins Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1 Back     alignment and domain information
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids Back     alignment and domain information
>PF13668 Ferritin_2: Ferritin-like domain Back     alignment and domain information
>PLN02492 ribonucleoside-diphosphate reductase Back     alignment and domain information
>PLN02492 ribonucleoside-diphosphate reductase Back     alignment and domain information
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional Back     alignment and domain information
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query302
2qqy_A149 Sigma B operon; dodecameric alpha-helical, ferriti 97.05
2fzf_A175 Hypothetical protein; structural genomics, southea 96.79
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 96.71
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 96.59
1nfv_A179 Bacterioferritin; 24 subunits in the active molecu 96.25
1mxr_A375 Ribonucleotide reductase R2; radical protein, DI i 96.18
2y3q_A158 Bacterioferritin; metal binding protein, redox; HE 95.97
4dr0_A350 Ribonucleoside-diphosphate reductase subunit beta; 95.62
3qb9_A174 Bacterioferritin, BFR; cytosol, structural genomic 95.37
1jgc_A161 Bacterioferritin, BFR; iron storage protein, metal 95.21
2fkz_A155 Bacterioferritin; ferroxidase, DIIRON site, iron T 95.08
3uoi_A161 Bacterioferritin, BFR; structural genomics, TB str 94.55
1zpy_A95 Hypothetical protein NE0167; structural genomics, 93.31
4am5_A159 Bacterioferritin; metal binding protein, ferroxida 92.95
2vzb_A170 Putative bacterioferritin-related protein; DPS, DP 92.78
2c41_A158 DPS family DNA-binding stress response protein; ir 92.58
1jk0_B345 RNR Y4, ribonucleoside-diphosphate reductase small 92.55
1jk0_A419 RNR Y2, ribonucleoside-diphosphate reductase small 92.19
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 92.01
2vxx_A192 Starvation induced DNA binding protein; stress res 91.93
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 91.75
2e0z_A 345 Virus-like particle; bacteriophage, HK97; 3.60A {P 91.59
3gvy_A161 Bacterioferritin; iron storage, DI-iron, ferroxida 91.49
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 91.34
3fvb_A182 Bacterioferritin; niaid, ssgcid, decode, structura 90.82
4etr_A153 Putative uncharacterized protein; DUF2383, domain 90.8
3pvt_A 311 Phenylacetic acid degradation protein PAAA; protei 90.55
1j30_A144 144AA long hypothetical rubrerythrin; sulerythrin, 90.38
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 90.2
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 89.45
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 89.36
1h0o_A390 Ribonucleoside-diphosphate reductase; oxidoreducta 89.26
3pf7_A 481 Benzoyl-COA oxygenase component B; DIIRON center, 89.17
3pwf_A170 Rubrerythrin; non heme iron peroxidases, oxidative 88.35
3k6c_A95 Uncharacterized protein NE0167; structural genomic 88.29
1yuz_A202 Nigerythrin; rubrythrin, rubredoxin, hemerythrin, 88.2
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 88.13
3mjo_A296 Ribonucleotide reductase subunit R2F; Mn ribonucle 87.61
1za0_A275 Possible acyl-[acyl-carrier protein] desaturase D 87.3
1krq_A167 Ferritin; H-chain like four-helix bundle, binding 87.25
3dhz_A329 Ribonucleotide reductase subunit R2F; metal free, 86.84
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 86.78
3n37_A319 Ribonucleoside-diphosphate reductase 2 subunit BE; 86.73
3r2k_A154 Bacterioferritin, BFR; bacterial ferritin, iron bi 86.21
4di0_A144 Rubrerythrin; ssgcid, seattle structural genomics 85.79
2fzf_A175 Hypothetical protein; structural genomics, southea 84.42
4a58_A324 Ribonucleoside-diphosphate reductase small chain; 83.96
1eum_A165 Ferritin 1; ECFTNA, metal binding protein; 2.05A { 83.9
2uw1_A338 Desaturase, plastid delta4 multifunctional acyl-AC 82.8
2jd6_0174 Ferritin homolog, ferritin; metal transport, iron, 82.38
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str} Back     alignment and structure
Probab=97.05  E-value=0.0014  Score=50.11  Aligned_cols=141  Identities=16%  Similarity=0.125  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHhhhhccccchhhHHHHhhhhcccC-hhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccc
Q 022114          135 LRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTF  213 (302)
Q Consensus       135 ~r~~FidFLerScTaEFSGflLyKEl~rrlk~~n-P~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTf  213 (302)
                      .++..++-|..-...|+.+...|.-+...+++.+ |.+++.|.-.+.+|..||.-|-+-+.+.|-..++. +.+-.  ..
T Consensus         7 ~~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~-~~~~~--~~   83 (149)
T 2qqy_A            7 DVKELIEGLNEDLAGEYSAIIMYNHNAATVSGIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTI-PLRVK--QA   83 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC-CCCCC--CC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC-CCCCC--CC
Confidence            4567899999999999999999999999996554 67999999999999999999999988888665542 21111  12


Q ss_pred             ccchhhhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHhhCccch
Q 022114          214 FKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFL  281 (302)
Q Consensus       214 F~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmraqP~ll  281 (302)
                      ..+.=++=...=.|+-.-..|=.+...-++..+....   ++++.--++|-+|-..+..++..-|..+
T Consensus        84 ~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~---~~l~~~~~eee~h~~~l~~~l~~~~~~~  148 (149)
T 2qqy_A           84 EDVREMLEYARQSEYETIKRYEKRKEQAANLNMTELV---VKLEDMIADETNHMEELDRLLNDKAMVL  148 (149)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            2344455555555665444444444444445555544   5555557899999999999998755544
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Back     alignment and structure
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A* Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Back     alignment and structure
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A* Back     alignment and structure
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Back     alignment and structure
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* Back     alignment and structure
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A* Back     alignment and structure
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A Back     alignment and structure
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A* Back     alignment and structure
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis} Back     alignment and structure
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus} Back     alignment and structure
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Back     alignment and structure
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus} Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Back     alignment and structure
>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus} Back     alignment and structure
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1 Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308} Back     alignment and structure
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa} Back     alignment and structure
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C Back     alignment and structure
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1 Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A* Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Back     alignment and structure
>3pf7_A Benzoyl-COA oxygenase component B; DIIRON center, epoxidase, benzoyl coenzyme A, oxidoreductase; 1.90A {Azoarcus evansii} PDB: 3per_A 3pm5_A* 3q1g_A Back     alignment and structure
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A Back     alignment and structure
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea} Back     alignment and structure
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Back     alignment and structure
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A* Back     alignment and structure
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Back     alignment and structure
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1 Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A* Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Back     alignment and structure
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A Back     alignment and structure
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1 Back     alignment and structure
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A Back     alignment and structure
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 302
d1vjxa_149 a.25.1.1 (A:) Hypothetical protein TM1526 {Thermot 0.004
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Length = 149 Back     information, alignment and structure

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein TM1526
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 20/142 (14%), Positives = 36/142 (25%), Gaps = 9/142 (6%)

Query: 140 VEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYA 199
            + L  +   E  G   Y+EL    +  N  + + F  ++  E  HA    K     N+ 
Sbjct: 8   SDILTVAIRLEEEGERFYREL---SEHFNGEIKKTFLELADQERIHAEIFRKMSDQENWD 64

Query: 200 LDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRY------ITIYRHLKANPEFQCYPIF 253
               +L     Y  F                           +I  + +           
Sbjct: 65  EVDSYLAGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLVNSDAQ 124

Query: 254 KYFENWCQDENRHGDFFSALMK 275
           K  +     E  H      + +
Sbjct: 125 KTVKKIIDQEKEHLRKLLEMKR 146

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query302
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 97.68
d1yuza1135 Nigerythrin, N-terminal domain {Desulfovibrio vulg 97.63
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 97.41
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 97.36
d1lkoa1146 Rubrerythrin, N-terminal domain {Desulfovibrio vul 96.72
d1nf4a_169 Bacterioferritin (cytochrome b1) {Desulfovibrio de 96.63
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 96.6
d2htna1158 Bacterioferritin (cytochrome b1) {Escherichia coli 96.44
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 96.34
d1nnqa1133 Rubrerythrin, N-terminal domain {Archaeon Pyrococc 96.33
d2fkza1154 Bacterioferritin (cytochrome b1) {Azotobacter vine 96.29
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 95.88
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 95.86
d1jgca_160 Bacterioferritin (cytochrome b1) {Rhodobacter caps 93.61
d1mxra_339 Ribonucleotide reductase R2 {Escherichia coli [Tax 91.53
d1euma_161 Non-hem ferritin {Escherichia coli, FtnA [TaxId: 5 90.94
d1mxra_ 339 Ribonucleotide reductase R2 {Escherichia coli [Tax 90.72
d2ib0a1142 Hypothetical protein Rv2844 {Mycobacterium tubercu 89.93
d3dhza1284 Ribonucleotide reductase R2 {Corynebacterium ammon 89.81
d1krqa_165 Non-hem ferritin {Campylobacter jejuni [TaxId: 197 87.73
d1r2fa_283 Ribonucleotide reductase R2 {Salmonella typhimuriu 86.99
d3dhza1284 Ribonucleotide reductase R2 {Corynebacterium ammon 86.59
d1syya_317 Ribonucleotide reductase R2 {Chlamydia trachomatis 86.3
d2ib0a1142 Hypothetical protein Rv2844 {Mycobacterium tubercu 85.76
d1w68a_281 Ribonucleotide reductase R2 {Mouse (Mus musculus) 85.42
d1za0a1267 Possible acyl-[acyl-carrier protein] desaturase {M 84.76
d1jk0a_334 Ribonucleotide reductase R2 {Baker's yeast (Saccha 83.44
d1zpya191 Hypothetical protein NE0167 {Nitrosomonas europaea 83.37
d1r2fa_283 Ribonucleotide reductase R2 {Salmonella typhimuriu 82.36
d1jk0b_285 Ribonucleotide reductase R2 {Baker's yeast (Saccha 80.14
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein PF1190
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.68  E-value=1.6e-05  Score=59.23  Aligned_cols=129  Identities=16%  Similarity=0.128  Sum_probs=89.1

Q ss_pred             HHHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccccccccccc-cC-----ccc
Q 022114          139 FVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTK-AR-----KYT  212 (302)
Q Consensus       139 FidFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk-~k-----~YT  212 (302)
                      ..|+|......|-.|.-.|..++.+.  .||.++++|..|++||.+|+..+.+.+...|...+...... ..     .+.
T Consensus        12 l~e~l~~ai~~E~~a~~~Y~~~a~~~--~~~~~~~~f~~la~eE~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (158)
T d2fzfa1          12 LEELLGMAIKAEIGAREFYKSLAEKI--KIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQPVAR   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSC--CCTTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCCCCCCSCCBSCCCCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccchhhhhhhhhhhhHh
Confidence            56788888899999999999999988  68999999999999999999999999988775533211100 00     000


Q ss_pred             c----ccchhhhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHh
Q 022114          213 F----FKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMK  275 (302)
Q Consensus       213 f----F~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmr  275 (302)
                      .    -..+=++-.....|+-++..|-.+-...   .+-....+   |+.=-+||-+|-..+..++.
T Consensus        90 ~~~~~~~~~~~l~~a~~~E~~a~~~Y~~la~~~---~d~~~~~l---~~~i~~~E~~H~~~l~~~~d  150 (158)
T d2fzfa1          90 ELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMV---KEEEKKRL---MRYLADMERGHYYTLRAEYE  150 (158)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---CSHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccCCHHHHHHHHHHHHHHHHHHHHHHHHhc---CcHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            0    0123455566677888866555444332   23334444   44556799999988876654
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]} Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Back     information, alignment and structure
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Back     information, alignment and structure
>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Back     information, alignment and structure