Citrus Sinensis ID: 022117

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MIQREEIISRTSYHYHQNHGGGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGREMGDSPKDASYLIESSANDNSLPNFPASDMNDYEVKEALRVQMEVQSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDQILGGAVVDADSEKCKGLGTKMPRSYILDSLGFYTSQSVEVAEVQCPEELLPNLHPQRADCSTESCLTSHESSGGLTMEGSPVGGKNSILSLDTTTGSLIWGEVKMGAQEISLARENPSGISGYGI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHcccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEHHHccccccEEEccccccccccccc
Coil and Loop (DISEMBL)
MIQREEIISRTSYHyhqnhgggiepcvvmtsdpkprlrwtADLHDRFVDAvtqlggpskatpKAIMRTMNVKGLTLFHLKSHLQKYRlgkqsgremgdspkdASYLIEssandnslpnfpasdmndyEVKEALRVQMEVQSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDqilggavvdadsekckglgtkmprsyildslgfytsqsvevaevqcpeellpnlhpqradcstescltshessggltmegspvggknsilsldtttgslIWGEVKMGAQEISLarenpsgisgygi
Flexible Loop (DISEMBL)
MIQREEIISRTSYHYHQNHGGGIEPCVVMTSDPKPRLRWTADLHDRFVDAVtqlggpskatpkAIMRTMNVKGLTLFHLKSHLQKYRlgkqsgremgdSPKDASYLIESSandnslpnfpASDMNDYEVKEALRVQMEVQSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDQILGGAVVDADSEKCKGLGTKMPRSYILDSLGFYTSQSVEVAEVQCPEELLPNLHPQRADCSTESCLTSHESSGGLTMEGSPVGGKNSILSLDTTTGSLIWGEVKMGAQeislarenpsgisgygi
Low Complexity Region (SEG)
MIQREEIISRTSYHYHQNHGGGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGREMGDSPKDASYLIESSANDNSLPNFPASDMNDYEVKEALRVQMEVQSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDQILGGAVVDADSEKCKGLGTKMPRSYILDSLGFYTSQSVEVAEVQCPEELLPNLHPQRADCSTESCLTSHESSGGLTMEGSPVGGKNSILSLDTTTGSLIWGEVKMGAQEISLARENPSGISGYGI
Disordered region (IsUnstruct)
**********TSYHYHQNHGGGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGP**ATPKAIMRTMNVKGLTLFHLKSHLQKY*******************************************************KLHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDQILGGAVVDADSEKCKGLGTKMPRSYILDSLGFYTSQSVEVAEVQCPEELL*************************************ILSLDTTTGSLIWGEVKMG*******************
Disordered Region (DISOPRED)
*************************************RWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY****************************************************************KHLQIRQNAQQ**************************************************************************************************************************************G**GY**
Disordered Region (DISEMBL)
MIQREEIISRTSYHYHQNHGGGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGK***********DASYLIESSANDNSLPNFPASDMNDYEVKEALRVQMEVQSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDQILGGAVVDADSEKCKGLGTKMPRSYILDSLGFYTSQSVEVAEVQCPEELLPNLHPQ**********************GSPVGGKNSILSLDTTTGSLIWGEVKMGAQEISLARENPSGISGYGI
Disordered Region (DISPRO)
**********************************PRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQS*********************************DYEVKEALRVQMEVQSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDQ**********************************************************************************************T*SLIWGEVKMGAQEISLARENPSGISGYG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIQREEIISRTSYHYHQNHGGGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGREMGDSPKDASYLIESSANDNSLPNFPASDMNDYEVKEALRVQMEVQSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDQILGGAVVDADSEKCKGLGTKMPRSYILDSLGFYTSQSVEVAEVQCPEELLPNLHPQRADCSTESCLTSHESSGGLTMEGSPVGGKNSILSLDTTTGSLIWGEVKMGAQEISLARENPSGISGYGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q9SAK5	358	Myb family transcription	no	no	0.473	0.399	0.569	4e-39
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.493	0.360	0.396	4e-25
Q700D9	255	Putative Myb family trans	no	no	0.211	0.250	0.582	7e-15
Q9C616	388	Probable transcription fa	no	no	0.334	0.260	0.420	8e-15
Q93WJ9	403	Transcription repressor K	no	no	0.215	0.161	0.538	2e-13
Q9FJV5	276	Probable transcription fa	no	no	0.261	0.286	0.487	3e-13
Q0J235	532	Probable transcription fa	no	no	0.225	0.127	0.536	7e-13
Q941I2	322	Probable transcription fa	no	no	0.215	0.201	0.507	1e-11
Q940D0	690	Two-component response re	no	no	0.360	0.157	0.385	3e-10
Q9ZWJ9	664	Two-component response re	no	no	0.178	0.081	0.563	8e-10

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  162 bits (409), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/151 (56%), Positives = 109/151 (72%), Gaps = 8/151 (5%)

Query: 27  VVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86
           +V+T+DPKPRLRWT +LH+RFVDAV QLGGP KATPK IMR M VKGLTL+HLKSHLQK+
Sbjct: 27  LVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86

Query: 87  RLGKQSGREMGD-SPKDASYLIESSANDNSLPNFPASDMNDYEVKEALRVQMEVQSKLHL 145
           RLGKQ  +E GD S K+ S    +SA D       +S M    + E   +QMEVQ +LH 
Sbjct: 87  RLGKQPHKEYGDHSTKEGS---RASAMDIQRNVASSSGMMSRNMNE---MQMEVQRRLHE 140

Query: 146 QVEAEKHLQIRQNAQQRYL-AMLERACKILT 175
           Q+E ++HLQ+R  AQ +Y+ ++LERAC+ L 
Sbjct: 141 QLEVQRHLQLRIEAQGKYMQSILERACQTLA 171

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  115 bits (288), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 100/164 (60%), Gaps = 15/164 (9%)

Query: 34  KPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLG--KQ 91
           K R+RWT +LH+ FV+AV QLGG  +ATPKA+++ +N  GLT++H+KSHLQKYR    K 
Sbjct: 231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYKP 290

Query: 92  SGREMGDSPKDASYLIESSANDNSLPNFPASDM-NDYEVKEALRVQMEVQSKLHLQVEAE 150
              E+   P++            S+ +  + DM    E+ +ALR+QMEVQ +LH Q+E +
Sbjct: 291 ETSEVTGEPQEKKM--------TSIEDIKSLDMKTSVEITQALRLQMEVQKRLHEQLEIQ 342

Query: 151 KHLQIRQNAQQRYLAML-ERACKILTDQILGGAVVDADSEKCKG 193
           + LQ++   Q RYL M+ E+  KI  ++    +  +A  ++C G
Sbjct: 343 RSLQLQIEKQGRYLQMMFEKQQKIQDNK---SSSSEASPKQCNG 383

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 81.6 bits (200), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 47/67 (70%), Gaps = 3/67 (4%)

Query: 21 GGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLK 80
          GG+ P V     P PRLRWT +LH  FV AV  LGG  KATPK +++ M+VKGLT+ H+K
Sbjct: 13 GGVRPYV---RSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVK 69

Query: 81 SHLQKYR 87
          SHLQ YR
Sbjct: 70 SHLQMYR 76

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 59/107 (55%), Gaps = 6/107 (5%)

Query: 15  YHQNHGGGIEPCVVMTSDPK------PRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRT 68
           YH +H   +     M   P       PR+RWT  LH RFV AV  LGG  +ATPK+++  
Sbjct: 188 YHNHHHQTLNRARFMPRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLEL 247

Query: 69  MNVKGLTLFHLKSHLQKYRLGKQSGREMGDSPKDASYLIESSANDNS 115
           M+VK LTL H+KSHLQ YR  K + +    S +   Y   SS ++NS
Sbjct: 248 MDVKDLTLAHVKSHLQMYRTVKTTDKAAASSGQSDVYENGSSGDNNS 294

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 45/65 (69%)

Query: 35  PRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGR 94
           PR+RWT+ LH RFV AV  LGG  +ATPK+++  M+VK LTL H+KSHLQ YR  K + +
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNK 279

Query: 95  EMGDS 99
               S
Sbjct: 280 PAASS 284

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 52/82 (63%), Gaps = 3/82 (3%)

Query: 35  PRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGR 94
           PR+RWT+ LH  FV AV  LGG  +ATPK+++  MNVK LTL H+KSHLQ YR  K + +
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDK 165

Query: 95  EM---GDSPKDASYLIESSAND 113
                G   K+A   IE + N+
Sbjct: 166 GSPGEGKVEKEAEQRIEDNNNN 187

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 75.1 bits (183), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 47/69 (68%), Gaps = 1/69 (1%)

Query: 35  PRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGR 94
           PR+RWT+ LH RFV AV  LGG  +ATPK+++  M+VK LTL H+KSHLQ YR  K + +
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDK 384

Query: 95  EMGDS-PKD 102
               S P D
Sbjct: 385 PAASSGPAD 393

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 43/65 (66%)

Query: 35  PRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGR 94
           PR+RWT  LH  FV AV  LGG  +ATPK+++  M+V+ LTL H+KSHLQ YR  K + +
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEK 224

Query: 95  EMGDS 99
               S
Sbjct: 225 PTTSS 229

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 5/114 (4%)

Query: 34  KPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSG 93
           KPR+ W+ +LH +FV AV QLG   KA PK I+  MNV GLT  ++ SHLQKYR+     
Sbjct: 237 KPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYRIYL--- 292

Query: 94  REMGDSPKDASYLIESSANDNSLPNFPASDMNDYEVKE-ALRVQMEVQSKLHLQ 146
           R +G   +    L  S          P S +N ++++  A+  Q+  QS   LQ
Sbjct: 293 RRLGGVSQHQGNLNNSFMTGQDASFGPLSTLNGFDLQALAVTGQLPAQSLAQLQ 346

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 34  KPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 88
           KPR+ W+ +LH +FV AV QLG   KA PK I+  MNV GLT  ++ SHLQKYR+
Sbjct: 216 KPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVASHLQKYRI 269

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
359806178	313	uncharacterized protein LOC100786397 [Gl	0.943	0.910	0.670	1e-108
363806688	314	uncharacterized protein LOC100782369 [Gl	0.943	0.907	0.651	1e-107
357448183	313	Myb family transcription factor [Medicag	0.937	0.904	0.666	1e-106
388503044	313	unknown [Medicago truncatula]	0.937	0.904	0.659	1e-105
147840890	350	hypothetical protein VITISV_035497 [Viti	0.937	0.808	0.598	1e-104
224124778	298	predicted protein [Populus trichocarpa]	0.903	0.916	0.689	1e-103
255568526	313	transcription factor, putative [Ricinus	0.923	0.891	0.660	1e-101
357448185	299	Myb family transcription factor [Medicag	0.900	0.909	0.649	1e-101
449434424	572	PREDICTED: uncharacterized protein LOC10	0.907	0.479	0.658	1e-100
388514523	292	unknown [Lotus japonicus]	0.890	0.921	0.627	7e-98

>gi|359806178|ref|NP_001241456.1| uncharacterized protein LOC100786397 [Glycine max] gi|255635309|gb|ACU18008.1| unknown [Glycine max]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/288 (67%), Positives = 231/288 (80%), Gaps = 3/288 (1%)

Query: 18  NHGGGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLF 77
           +H    +PC+V+T+DPKPRLRWT DLH+RFVDAVTQLGG SKATPKAIMRTMNVKGLTLF
Sbjct: 26  SHAHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLF 85

Query: 78  HLKSHLQKYRLGKQSGREMGDSPKDASYLIESSANDNSLPNFPASDMND-YEVKEALRVQ 136
           HLKSHLQKYRLGKQSG+++G+  KD SYL+ES   DNS P  P SD N+ YE+KEALR Q
Sbjct: 86  HLKSHLQKYRLGKQSGKDVGEGCKDGSYLLESPGADNSSPKLPTSDTNEGYEIKEALRAQ 145

Query: 137 MEVQSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDQILGGAVVDADSEKCKGLGT 196
           MEVQSKLHLQVEAEKHLQIRQ+A++RY+AMLERACK+L DQ +G  V+D DS+K +G+G+
Sbjct: 146 MEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQGIGS 205

Query: 197 KMPRSYILDSLGFYTSQSVEVAEVQCPEELLP-NLHPQRADCSTESCLTSHESSGGLTME 255
           K PR  ++D LGFY+  S EVA V  PEE +P +L PQRADCSTESCLTSHESSGGL +E
Sbjct: 206 KAPRGTLVDPLGFYSMPSTEVAGVNVPEEEIPLSLPPQRADCSTESCLTSHESSGGLALE 265

Query: 256 GSPVGGKNSILSLDTTTGSLIWGEVKMGAQEISLAREN-PSGISGYGI 302
           GSP  GK  +L +D+    LIW E KM  Q I++A+ N P GI+ YG+
Sbjct: 266 GSPGEGKRRMLGMDSMAAPLIWSEAKMRTQAINVAQGNLPQGITRYGM 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806688|ref|NP_001242009.1| uncharacterized protein LOC100782369 [Glycine max] gi|255636439|gb|ACU18558.1| unknown [Glycine max]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/293 (65%), Positives = 232/293 (79%), Gaps = 8/293 (2%)

Query: 13  YHYHQNHGGGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVK 72
           +H H+      +PC+V+T+DPKPRLRWT DLH+RFVDAVTQLGG SKATPKAIMRTMNVK
Sbjct: 27  FHAHKG-----DPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVK 81

Query: 73  GLTLFHLKSHLQKYRLGKQSGREMGDSPKDASYLIESSANDNSLPNFPASDMND-YEVKE 131
           GLTLFHLKSHLQKYRLGKQSG+++G+  KD S+L+ES   DN+ P  P  D N+ YE+KE
Sbjct: 82  GLTLFHLKSHLQKYRLGKQSGKDVGEGCKDGSHLLESPGADNTSPKLPTPDTNEGYEIKE 141

Query: 132 ALRVQMEVQSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDQILGGAVVDADSEKC 191
           ALR QMEVQSKLHLQVEAEKHLQIRQ+A++RY+AMLERACK+L DQ +   V+D DS+K 
Sbjct: 142 ALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFISATVIDTDSQKF 201

Query: 192 KGLGTKMPRSYILDSLGFYTSQSVEVAEVQCP-EELLPNLHPQRADCSTESCLTSHESSG 250
           +G+G+K PR  ++D LGFY+  S EVA V  P EE+LP+L PQRADCSTESCLTSHESSG
Sbjct: 202 QGIGSKAPRGTLVDPLGFYSLPSTEVAGVNVPEEEILPSLPPQRADCSTESCLTSHESSG 261

Query: 251 GLTMEGSPVGGKNSILSLDTTTGSLIWGEVKMGAQEISLAREN-PSGISGYGI 302
           GL +EGSP  GK  +L +D+    LIW E KM  Q I++A+ N P GI+ YG+
Sbjct: 262 GLALEGSPGEGKRRMLGMDSMAAPLIWSEAKMRTQAINVAQGNHPQGITRYGM 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448183|ref|XP_003594367.1| Myb family transcription factor [Medicago truncatula] gi|124360874|gb|ABN08846.1| Homeodomain-related [Medicago truncatula] gi|355483415|gb|AES64618.1| Myb family transcription factor [Medicago truncatula]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/291 (66%), Positives = 229/291 (78%), Gaps = 8/291 (2%)

Query: 18  NHGGGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLF 77
           NH G  +PC+V+T+DPKPRLRWT DLH+RFVDAVTQLGGPSKATPKAIMRTMNVKGLTLF
Sbjct: 25  NHKG--DPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLF 82

Query: 78  HLKSHLQKYRLGKQSGREMGDSPKD---ASYLIESSANDNSLPNFPASDMND-YEVKEAL 133
           HLKSHLQKYRLGKQSG+++G+  KD    SYL+ES   +N  P  P SD N+ YE+KEAL
Sbjct: 83  HLKSHLQKYRLGKQSGKDIGEGCKDGMTGSYLLESPGTENPSPKLPTSDTNEGYEIKEAL 142

Query: 134 RVQMEVQSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDQILGGAVVDADSEKCKG 193
           R QMEVQSKLHLQVEAEKHLQIRQ+A++RY+AMLERACK+L DQ +G  V+D DS+K +G
Sbjct: 143 RAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQG 202

Query: 194 LGTKMPRSYILDSLGFYTSQSVEVAEVQCPEELLP-NLHPQRADCSTESCLTSHESSGGL 252
           +  K PR  ++D LGFY+  S E A V  PEE +P  + PQRADCSTESCLTSHESSGGL
Sbjct: 203 IENKAPRGPLVDHLGFYSLPSTEAAGVNVPEEEVPQTIPPQRADCSTESCLTSHESSGGL 262

Query: 253 TMEGSPVGGKNSILSLDTTTGSLIWGEVKMGAQEISLAREN-PSGISGYGI 302
           T+EGS VGGK  +L +D+    LIW E KM  Q I+L + N P GIS YG+
Sbjct: 263 TLEGSQVGGKRRMLGMDSMAAPLIWSEAKMKTQAINLGQGNHPLGISRYGM 313

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503044|gb|AFK39588.1| unknown [Medicago truncatula]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/291 (65%), Positives = 228/291 (78%), Gaps = 8/291 (2%)

Query: 18  NHGGGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLF 77
           NH G  +PC+V+T+DPKPRLRWT DLH+RFVDAVTQLGGPSKATPKAIMRTMNVKGLTLF
Sbjct: 25  NHKG--DPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLF 82

Query: 78  HLKSHLQKYRLGKQSGREMGDSPKD---ASYLIESSANDNSLPNFPASDMND-YEVKEAL 133
           HLKSHLQKYRLGKQSG+++G+  KD    SYL+ES   +N  P  P SD N+ YE+KEAL
Sbjct: 83  HLKSHLQKYRLGKQSGKDIGEGCKDGMTGSYLLESPGTENPSPKLPTSDTNEGYEIKEAL 142

Query: 134 RVQMEVQSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDQILGGAVVDADSEKCKG 193
           R QMEVQS+LHLQVEAEKHLQIRQ+A++RY+AMLERACK+L DQ +G  V+D D +K +G
Sbjct: 143 RAQMEVQSRLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDGQKFQG 202

Query: 194 LGTKMPRSYILDSLGFYTSQSVEVAEVQCPEELLP-NLHPQRADCSTESCLTSHESSGGL 252
           +  K PR  ++D LGFY+  S E A V  PEE +P  + PQRADCSTESCLTSHESSGGL
Sbjct: 203 IENKAPRGPLVDHLGFYSLPSAEAAGVNVPEEEVPQTIPPQRADCSTESCLTSHESSGGL 262

Query: 253 TMEGSPVGGKNSILSLDTTTGSLIWGEVKMGAQEISLAREN-PSGISGYGI 302
           T+EGS VGGK  +L +D+    LIW E KM  Q I+L + N P GIS YG+
Sbjct: 263 TLEGSQVGGKRRMLGMDSMVAPLIWSEAKMKTQAINLGQGNHPLGISRYGM 313

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840890|emb|CAN66504.1| hypothetical protein VITISV_035497 [Vitis vinifera]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/329 (59%), Positives = 234/329 (71%), Gaps = 46/329 (13%)

Query: 18  NHGGGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPS-----------------KA 60
           NH G  +PC+V+TSDPKPRLRWTADLH+RFVDAVTQLGG +                  +
Sbjct: 24  NHRG--DPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGANMYIGDYSMSMVDFIDWLSS 81

Query: 61  TPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGREMGDSPKD---ASYLIESSANDNSLP 117
           TPKAIMRTM VKGLTLFHLKSHLQKYRLGKQSG++MG++PKD   ASYL ES    NS P
Sbjct: 82  TPKAIMRTMGVKGLTLFHLKSHLQKYRLGKQSGKDMGEAPKDGISASYLSESPGTSNSSP 141

Query: 118 NFPASDMNDY-----------------------EVKEALRVQMEVQSKLHLQVEAEKHLQ 154
           N P SD+N+Y                       EVKEALRVQMEVQSKLHLQVEAEKHLQ
Sbjct: 142 NLPTSDINEYHNRFIKFEVTKFFKGMNFMFRGYEVKEALRVQMEVQSKLHLQVEAEKHLQ 201

Query: 155 IRQNAQQRYLAMLERACKILTDQILGGAVVDADSEKCKGLGTKMPRSYILDSLGFYTSQS 214
           IRQ+A++RY+AMLERACK+L DQ +GGAV+D D +K +GLG   P S   + LGFY+ QS
Sbjct: 202 IRQDAERRYMAMLERACKMLADQFIGGAVIDTDKQKLQGLGATTPTSSSQNLLGFYSLQS 261

Query: 215 VEVAEVQCPE-ELLPNLHPQRADCSTESCLTSHESSGGLTMEGSPVGGKNSILSLDTTTG 273
            E+  +  PE E+LP+LHPQR DCSTESCLTSHES  GL +EGSP GGK  +LSLD+ T 
Sbjct: 262 GELVRLHGPEDEVLPSLHPQRTDCSTESCLTSHESPAGLPLEGSPAGGKKRMLSLDSMTA 321

Query: 274 SLIWGEVKMGAQEISLARENPSGISGYGI 302
           SLIW E KM  Q++++ +    GI+GYG+
Sbjct: 322 SLIWSEAKMRTQDVNVPQVETHGIAGYGL 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124778|ref|XP_002329946.1| predicted protein [Populus trichocarpa] gi|222871968|gb|EEF09099.1| predicted protein [Populus trichocarpa]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/280 (68%), Positives = 225/280 (80%), Gaps = 7/280 (2%)

Query: 27  VVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86
           VV+TSDPKPRLRWTADLH RFVDAV+QLGGP+KATPKAI+RTMNVKGLTLFHLKSHLQKY
Sbjct: 20  VVLTSDPKPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSHLQKY 79

Query: 87  RLGKQSGREMGDSPKD---ASYLIESSANDNSLPNFPASDMND-YEVKEALRVQMEVQSK 142
           RLGKQSG++M D+ KD    SYL+E+    NS  N  ASD+N+ YEVKEALR QMEVQSK
Sbjct: 80  RLGKQSGKDMSDTFKDGLSGSYLLENPCTGNSSLNMTASDVNEGYEVKEALRAQMEVQSK 139

Query: 143 LHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDQILGGAVVDADSEKCKGLGTKMPRSY 202
           LHLQVEAEKHL IR +A++RYLAMLERACK+L DQ +G AV+D DS+  KGLGT+  R  
Sbjct: 140 LHLQVEAEKHLHIRLDAERRYLAMLERACKMLADQFIGAAVIDTDSQ--KGLGTRTTRIA 197

Query: 203 ILDSLGFYTSQSVEVAEVQCPEELLPNLHPQRADCSTESCLTSHESSGGLTMEGSPVGGK 262
            LD LGFY+ Q+ EVAEV  PE++LP LH Q ADCSTESCLTS+ES GGL +EGSP GGK
Sbjct: 198 SLDPLGFYSLQTSEVAEVHGPEDVLPGLHHQGADCSTESCLTSNESPGGLNLEGSPAGGK 257

Query: 263 NSILSLDTTTGSLIWGEVKMGAQEISLARENPSGISGYGI 302
             +LSL++ T SLIWGE +MG  E++  + N  G S YGI
Sbjct: 258 KGMLSLESAT-SLIWGETRMGNAEVNATQVNSYGASLYGI 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568526|ref|XP_002525237.1| transcription factor, putative [Ricinus communis] gi|223535534|gb|EEF37203.1| transcription factor, putative [Ricinus communis]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/289 (66%), Positives = 229/289 (79%), Gaps = 10/289 (3%)

Query: 19  HGGGI-EPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLF 77
           H  GI EPC+V+TSDPKPRLRWTADLH+RFVDA++QLGGP+KATPKAIMRTMNVKGLTLF
Sbjct: 28  HNQGIREPCLVLTSDPKPRLRWTADLHNRFVDAISQLGGPNKATPKAIMRTMNVKGLTLF 87

Query: 78  HLKSHLQKYRLGKQSGREMGDSPKD---ASYLIESSANDNSLPNFPASDMND-YEVKEAL 133
           HLKSHLQKYRLGKQSG++MG++ KD    SYL+ES    +S PN   SDMN+ YEVKEAL
Sbjct: 88  HLKSHLQKYRLGKQSGKDMGEASKDGLSGSYLLESPGAGSSSPNIVTSDMNEGYEVKEAL 147

Query: 134 RVQMEVQSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDQILGGAVVDADSEKCKG 193
           RVQMEVQSKL+LQVEAEKHLQIRQ+A++RYLAMLERACK+L DQ LGG V+D+D +K   
Sbjct: 148 RVQMEVQSKLYLQVEAEKHLQIRQDAEKRYLAMLERACKMLADQFLGGTVIDSDIQKDS- 206

Query: 194 LGTKMPRSYILDSLGFYTSQSVEVAEVQCPEELLPNLHPQRADCSTESCLTSHESSGGLT 253
            G+K  RS  +D LGF++ Q+   AE +  EE+  +LH Q ADCSTESCLTS+ES GGL 
Sbjct: 207 -GSKKKRSASVDPLGFHSLQTEAEAEARGLEEVPSSLHQQGADCSTESCLTSNESPGGLN 265

Query: 254 MEGSPVGGKNSILSLDTTTGSLIWGEVKMGAQEISLARENPSGISGYGI 302
           +EGSP GGK  + SLD+T   L W E KM   E+++ + N  G+SGYGI
Sbjct: 266 LEGSPAGGKKQMPSLDST---LNWEEAKMRTSEVNMVQVNSHGMSGYGI 311

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448185|ref|XP_003594368.1| Myb family transcription factor [Medicago truncatula] gi|355483416|gb|AES64619.1| Myb family transcription factor [Medicago truncatula]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/288 (64%), Positives = 218/288 (75%), Gaps = 16/288 (5%)

Query: 18  NHGGGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLF 77
           NH G  +PC+V+T+DPKPRLRWT DLH+RFVDAVTQLGGPSKATPKAIMRTMNVKGLTLF
Sbjct: 25  NHKG--DPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLF 82

Query: 78  HLKSHLQKYRLGKQSGREMGDSPKDASYLIESSANDNSLPNFPASDMND-YEVKEALRVQ 136
           HLKSHLQKYRLG              SYL+ES   +N  P  P SD N+ YE+KEALR Q
Sbjct: 83  HLKSHLQKYRLGMT-----------GSYLLESPGTENPSPKLPTSDTNEGYEIKEALRAQ 131

Query: 137 MEVQSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDQILGGAVVDADSEKCKGLGT 196
           MEVQSKLHLQVEAEKHLQIRQ+A++RY+AMLERACK+L DQ +G  V+D DS+K +G+  
Sbjct: 132 MEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQGIEN 191

Query: 197 KMPRSYILDSLGFYTSQSVEVAEVQCPEELLP-NLHPQRADCSTESCLTSHESSGGLTME 255
           K PR  ++D LGFY+  S E A V  PEE +P  + PQRADCSTESCLTSHESSGGLT+E
Sbjct: 192 KAPRGPLVDHLGFYSLPSTEAAGVNVPEEEVPQTIPPQRADCSTESCLTSHESSGGLTLE 251

Query: 256 GSPVGGKNSILSLDTTTGSLIWGEVKMGAQEISLAREN-PSGISGYGI 302
           GS VGGK  +L +D+    LIW E KM  Q I+L + N P GIS YG+
Sbjct: 252 GSQVGGKRRMLGMDSMAAPLIWSEAKMKTQAINLGQGNHPLGISRYGM 299

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434424|ref|XP_004134996.1| PREDICTED: uncharacterized protein LOC101215173 [Cucumis sativus]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/278 (65%), Positives = 218/278 (78%), Gaps = 4/278 (1%)

Query: 24  EPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHL 83
           +PC+V+TSDPKPRLRWTADLH+RFVDAVTQLGG  KATPKAIMRTMNVKGLTLFHLKSHL
Sbjct: 32  DPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHL 91

Query: 84  QKYRLGKQSGREMGDSPKDAS---YLIESSANDNSLPNFPASDMND-YEVKEALRVQMEV 139
           QKYRLGKQSG++MG++ KD +   YL+ES + +N  P+ P S+M D YEVKEALR QMEV
Sbjct: 92  QKYRLGKQSGKDMGEASKDGTSGAYLLESPSTNNFSPDLPISEMADGYEVKEALRAQMEV 151

Query: 140 QSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDQILGGAVVDADSEKCKGLGTKMP 199
           QSKLHLQVEAEKHLQIRQ+A++RYLAMLERACK+L DQ + GAV D+DS+K +G   K P
Sbjct: 152 QSKLHLQVEAEKHLQIRQDAERRYLAMLERACKMLADQFIVGAVSDSDSKKSEGQDRKSP 211

Query: 200 RSYILDSLGFYTSQSVEVAEVQCPEELLPNLHPQRADCSTESCLTSHESSGGLTMEGSPV 259
           RS  +D LGFYT+QS E+  V   EE+  NL  QRADCSTESCLTS+ES GGL ME SP 
Sbjct: 212 RSTSIDPLGFYTTQSQEMERVNGTEEVQANLPCQRADCSTESCLTSNESPGGLAMEKSPA 271

Query: 260 GGKNSILSLDTTTGSLIWGEVKMGAQEISLARENPSGI 297
             K ++++L + T SLIW   K G Q  ++ + N  G 
Sbjct: 272 ASKKNMVNLGSATASLIWSGAKEGIQNANIIQVNHHGF 309

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514523|gb|AFK45323.1| unknown [Lotus japonicus]

 Score =  363 bits (931), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 182/290 (62%), Positives = 213/290 (73%), Gaps = 21/290 (7%)

Query: 20  GGGI-----EPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGL 74
           GGG+     +PC+V+T+DPKPR RWT DLH+RFVDAVTQLGGPSKATPKAIMRTMNVKGL
Sbjct: 17  GGGVPNHKGDPCLVLTADPKPRPRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGL 76

Query: 75  TLFHLKSHLQKYRLGKQSGREMGDSPKDASYLIESSANDNSLPNFPASDMND-YEVKEAL 133
           TLFHLKSHLQKYRLG              SYL+ES  +DN  P  P SD N+ YE+KEAL
Sbjct: 77  TLFHLKSHLQKYRLG--------------SYLLESPGSDNPSPKLPTSDTNEGYEIKEAL 122

Query: 134 RVQMEVQSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDQILGGAVVDADSEKCKG 193
           R QMEVQSKLHLQVEAEKHLQIRQ A++RY+AM+ERACK+L DQ +   V D D++K +G
Sbjct: 123 RAQMEVQSKLHLQVEAEKHLQIRQEAERRYMAMVERACKMLADQFISATVTDTDNQKFQG 182

Query: 194 LGTKMPRSYILDSLGFYTSQSVEVAEVQCPEELLP-NLHPQRADCSTESCLTSHESSGGL 252
           +G+K PR  ++D  GFY+  S E A V  PEE  P NL  QRADCSTESCLTSHESSGGL
Sbjct: 183 IGSKAPRGSLVDHPGFYSLPSTEAAGVSVPEEERPHNLPSQRADCSTESCLTSHESSGGL 242

Query: 253 TMEGSPVGGKNSILSLDTTTGSLIWGEVKMGAQEISLARENPSGISGYGI 302
            +EGSP  G+  +L +D+    LIW E KM  Q I+LA  N  GIS YG+
Sbjct: 243 VLEGSPSEGRRGMLGMDSFAAPLIWSEAKMKTQAINLAHGNSHGISRYGM 292

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
TAIR|locus:2119425	295	UNE16 "unfertilized embryo sac	0.718	0.735	0.487	6.9e-47
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.741	0.751	0.468	3e-46
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.509	0.430	0.543	1.6e-38
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.701	0.538	0.410	3e-37
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.768	0.577	0.390	2.7e-36
TAIR|locus:2026739	337	AT1G69580 [Arabidopsis thalian	0.731	0.655	0.382	2e-33
TAIR|locus:2157146	264	AT5G45580 [Arabidopsis thalian	0.486	0.556	0.468	4.7e-32
TAIR|locus:2087740	235	AT3G12730 [Arabidopsis thalian	0.456	0.587	0.496	3e-30
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.490	0.517	0.449	1.5e-28
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.506	0.370	0.4	1.4e-25

TAIR|locus:2119425 UNE16 "unfertilized embryo sac 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 114/234 (48%), Positives = 156/234 (66%)

Query:    23 IEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSH 82
             I+ C+V+T+DPKPRLRWT++LH+RFVDAVTQLGGP KATPK IMRTM VKGLTL+HLKSH
Sbjct:    26 IDACLVLTTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 85

Query:    83 LQKYRLGKQSGREMGDSPKDASYLIES----SANDNSLPNFPASDMND-YEVKEALRVQM 137
             LQK+RLG+QS +E  D+ KD S + ES    S++ +SL    A + N+ Y+V EALR QM
Sbjct:    86 LQKFRLGRQSCKESIDNSKDVSCVAESQDTGSSSTSSL-RLAAQEQNESYQVTEALRAQM 144

Query:   138 EVQSKLHLQVE---AEKHLQIRQNAQQRYL-AMLERACKILTDQILGGAVVDADSEKCKG 193
             EVQ +LH Q+E    ++ LQ+R  AQ +YL ++LE+ACK + +Q +  A ++A  E+   
Sbjct:   145 EVQRRLHEQLEYTQVQRRLQLRIEAQGKYLQSILEKACKAIEEQAVAFAGLEAAREELSE 204

Query:   194 LGTKMPRSYILDSLGFYTSQSVEVAEVQCPE--ELLPNLHPQRADCSTESCLTS 245
             L  K   S      G  T+ + +  ++  P   EL   +   + +CS ES LTS
Sbjct:   205 LAIKA--SITNGCQG--TTSTFDTTKMMIPSLSELAVAIE-HKNNCSAESSLTS 253

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 112/239 (46%), Positives = 155/239 (64%)

Query:    24 EPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHL 83
             + C+V+T+DPKPRLRWT +LH+RFVDAVTQLGGP KATPK IMRTM VKGLTL+HLKSHL
Sbjct:    31 DACLVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHL 90

Query:    84 QKYRLGKQSGREMGDSPKDASYLIESS---ANDNSLPNFPASDMND-YEVKEALRVQMEV 139
             QK+RLG+Q+G+E  ++ KDAS + ES    ++  S       + N+ Y+V EALR QMEV
Sbjct:    91 QKFRLGRQAGKESTENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGYQVTEALRAQMEV 150

Query:   140 QSKLHLQVE---AEKHLQIRQNAQQRYL-AMLERACKILTDQILGGAVVDADSEKCKGLG 195
             Q +LH Q+E    ++ LQ+R  AQ +YL ++LE+ACK   +Q    A ++A  E+   L 
Sbjct:   151 QRRLHDQLEYGQVQRRLQLRIEAQGKYLQSILEKACKAFDEQAATFAGLEAAREELSELA 210

Query:   196 TKMPRSYILDSLGFYTSQSVEVAEVQCPEEL---LPNLHPQRADCSTESCLTS--HESS 249
              K+  S    S+ ++   + ++  +    EL   + N +    +CS ES LTS  H SS
Sbjct:   211 IKVSNSSQGTSVPYF--DATKMMMMPSLSELAVAIDNKNNITTNCSVESSLTSITHGSS 267

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 88/162 (54%), Positives = 113/162 (69%)

Query:    27 VVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86
             +V+T+DPKPRLRWT +LH+RFVDAV QLGGP KATPK IMR M VKGLTL+HLKSHLQK+
Sbjct:    27 LVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86

Query:    87 RLGKQSGREMGD-SPKDASYLIESSANDNSLPNFPASDMNDYEVKEALRVQMEVQSKLHL 145
             RLGKQ  +E GD S K+ S    +SA D       +S M    + E   +QMEVQ +LH 
Sbjct:    87 RLGKQPHKEYGDHSTKEGS---RASAMDIQRNVASSSGMMSRNMNE---MQMEVQRRLHE 140

Query:   146 QVEAEKHLQIRQNAQQRYL-AMLERACKILTDQILGGAVVDA 186
             Q+E ++HLQ+R  AQ +Y+ ++LERAC+ L  + +  A   A
Sbjct:   141 QLEVQRHLQLRIEAQGKYMQSILERACQTLAGENMAAATAAA 182

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 96/234 (41%), Positives = 139/234 (59%)

Query:    27 VVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86
             +++++D KPRL+WT DLH+RF++AV QLGG  KATPK IM+ M + GLTL+HLKSHLQKY
Sbjct:    38 LILSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKY 97

Query:    87 RLGKQSGREMGDSPKDASYL--IESSAND------NSLPNFPASDMNDYEVKEALRVQME 138
             RL K    +  +S      +  +E    D       +L   P  + N   + EAL++Q+E
Sbjct:    98 RLSKNLNGQANNSFNKIGIMTMMEEKTPDADEIQSENLSIGPQPNKNS-PIGEALQMQIE 156

Query:   139 VQSKLHLQVEAEKHLQIRQNAQQRYL-AMLERACKILTDQILGGAVVDADSEKCKGLGTK 197
             VQ +LH Q+E ++HLQ+R  AQ +YL ++LE+A + L  Q LG A ++A   +   L +K
Sbjct:   157 VQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGAAGIEAAKVQLSELVSK 216

Query:   198 MPRSYILDSLGFYTSQSVEVAEVQ--CPEELLPNLHPQRADCSTESCLTSHESS 249
             +   Y         S  +E  E+Q  C +++  N  P   DCS ESCLTS E +
Sbjct:   217 VSAEYP-------NSSFLEPKELQNLCSQQMQTNYPP---DCSLESCLTSSEGT 260

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 98/251 (39%), Positives = 148/251 (58%)

Query:     8 ISRTSYHYHQNHGGGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMR 67
             IS   + + + +G G +  +++++D KPRL+WT DLH+RFV+AV QLGG  KATPK IM+
Sbjct:    20 ISSERHPFLRGNGTG-DSGLILSTDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMK 78

Query:    68 TMNVKGLTLFHLKSHLQKYRLGKQSGREMGDSPKDASYL--IESS------ANDNSLPNF 119
              M + GLTL+HLKSHLQKYRL K    +   S    S +  +E +      ++  SL   
Sbjct:    79 VMGIPGLTLYHLKSHLQKYRLSKNLNGQANSSLNKTSVMTMVEENPPEVDESHSESLSIG 138

Query:   120 PASDMNDYEVKEALRVQMEVQSKLHLQVEAEKHLQIRQNAQQRYL-AMLERACKILTDQI 178
             P   MN   + +AL++Q+EVQ +LH Q+E ++HLQ+R  AQ +YL ++LE+A + L  Q 
Sbjct:   139 PQPSMN-LPISDALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQETLGRQN 197

Query:   179 LGGAVVDADSEKCKGLGTKMPRSYILDSLGFYTSQSVEVAEVQCPEELLPNLHPQRADCS 238
             LG A ++A   +   L +K+   Y  DS  F   + ++    Q  ++  P   P   + S
Sbjct:   198 LGAAGIEATKAQLSELVSKVSADYP-DS-SFLEPKELQNLHHQQMQKTYP---P---NSS 249

Query:   239 TESCLTSHESS 249
              +SCLTS E +
Sbjct:   250 LDSCLTSSEGT 260

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2026739 AT1G69580 [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 90/235 (38%), Positives = 130/235 (55%)

Query:    27 VVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86
             +V+++D KPRL+WT DLH +F++AV QLGGP+KATPK +M+ M + GLTL+HLKSHLQKY
Sbjct:    27 LVLSTDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKY 86

Query:    87 RLGKQ---SGREMGDSPKDASYLIESSANDNSLPNFPASDMND-------YEVKEALRVQ 136
             RLGK       ++  S    +  +ES  +   L     ++ N         ++ EAL++Q
Sbjct:    87 RLGKSMKFDDNKLEVSSASENQEVESKNDSRDLRGCSVTEENSNPAKDRGLQITEALQMQ 146

Query:   137 MEVQSKLHLQVEAEKHLQIRQNAQQRYL-AMLERACKILTDQILGGAVVDADSEKCKGLG 195
             MEVQ KLH Q+E ++HLQ++  AQ +YL ++L +A + L         +D    +   L 
Sbjct:   147 MEVQKKLHEQIEVQRHLQVKIEAQGKYLQSVLMKAQQTLAGYSSSNLGMDFARTELSRLA 206

Query:   196 TKMPRSYILDSLGFYTSQSVEVAEVQCPEELLP-NLHPQRADCSTESCLTSHESS 249
             + + R     S  F     VE  E        P N    +  CS ES LTS E+S
Sbjct:   207 SMVNRG--CPSTSFSELTQVEEEEEGFLWYKKPENRGISQLRCSVESSLTSSETS 259

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2157146 AT5G45580 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 74/158 (46%), Positives = 105/158 (66%)

Query:    28 VMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYR 87
             +MT DPKPRLRWTADLHDRFVDAV +LGG  KATPK++++ M +KGLTL+HLKSHLQKYR
Sbjct:     1 MMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYR 60

Query:    88 LGKQSGREMGDSPKD-----ASYLIESSANDNSLPNFPASDMNDYE-----VKEALRVQM 137
             LG+Q G++   + ++     +SY+   + +   + N    D +  +       EA+R Q+
Sbjct:    61 LGQQQGKKQNRTEQNKENAGSSYVHFDNCSQGGISNDSRFDNHQRQSGNVPFAEAMRHQV 120

Query:   138 EVQSKLHLQVEAEKHLQIRQNAQQRYL-AMLERACKIL 174
             + Q +   Q+E +K LQ+R  AQ +YL  +LE+A K L
Sbjct:   121 DAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSL 158

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2087740 AT3G12730 [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 77/155 (49%), Positives = 103/155 (66%)

Query:    27 VVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86
             +V+T+DPKPRLRWT +LH+RFVDAVT LGGP KATPK IMR M VKGLTL+HLKSHLQK+
Sbjct:    16 LVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQKF 75

Query:    87 RLGKQSGREMGDSP----KD---ASYL-IESSANDNSLPNFPASDMNDYEVKEALRVQME 138
             RLGKQ  +E   +     +D   AS L +  +A   + P     +MN+        +QME
Sbjct:    76 RLGKQPHKEHSQNHSICIRDTNRASMLDLRRNAVFTTSPLIIGRNMNE--------MQME 127

Query:   139 VQSKLHLQVEAEKHLQIRQNAQQRYL-AMLERACK 172
             VQ ++  +V  E+ +  R  AQ +Y+ +MLE+AC+
Sbjct:   128 VQRRIEEEVVIERQVNQRIAAQGKYMESMLEKACE 162

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 71/158 (44%), Positives = 100/158 (63%)

Query:    34 KPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSG 93
             K RLRWT +LH+RFVDAV QLGGP +ATPK ++R M V+GLT++H+KSHLQKYRL K   
Sbjct:    15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKY-- 72

Query:    94 REMGDSPKDASYLIESSANDNSLPNFPASDMNDYEVKEALRVQMEVQSKLHLQVEAEKHL 153
               + DS  +     +  + D  L     S  +  ++ EAL++QMEVQ +LH Q+E ++ L
Sbjct:    73 --LPDSSSEGKKTDKKESGD-MLSGLDGS--SGMQITEALKLQMEVQKRLHEQLEVQRQL 127

Query:   154 QIRQNAQQRYLAMLERACKILTDQILG--GAVVDADSE 189
             Q+R  AQ +YL  +    + L+  +LG   A V  DS+
Sbjct:   128 QLRIEAQGKYLKKIIEEQQRLSG-VLGEPSAPVTGDSD 164

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 68/170 (40%), Positives = 103/170 (60%)

Query:    28 VMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYR 87
             V TS  K R+RWT +LH+ FV+AV QLGG  +ATPKA+++ +N  GLT++H+KSHLQKYR
Sbjct:   227 VATS--KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYR 284

Query:    88 LG--KQSGREMGDSPKDASYLIESSANDNSLPNFPASDMN-DYEVKEALRVQMEVQSKLH 144
                 K    E+   P++            S+ +  + DM    E+ +ALR+QMEVQ +LH
Sbjct:   285 TARYKPETSEVTGEPQEKKM--------TSIEDIKSLDMKTSVEITQALRLQMEVQKRLH 336

Query:   145 LQVEAEKHLQIRQNAQQRYLAML-ERACKILTDQILGGAVVDADSEKCKG 193
              Q+E ++ LQ++   Q RYL M+ E+  KI  ++    +  +A  ++C G
Sbjct:   337 EQLEIQRSLQLQIEKQGRYLQMMFEKQQKIQDNK---SSSSEASPKQCNG 383

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00011845001 SubName- Full=Chromosome undetermined scaffold_342, whole genome shotgun sequence; (308 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	302
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	2e-23
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	8e-16
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	6e-08
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	7e-06

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 90.5 bits (225), Expect = 2e-23
 Identities = 35/57 (61%), Positives = 41/57 (71%)

Query: 34 KPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGK 90
          KPR+ WT DLHDRF+ AV +LGGP  ATPK I+  M V GLT   + SHLQKYRL +
Sbjct: 1  KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 70.0 bits (172), Expect = 8e-16
 Identities = 27/50 (54%), Positives = 37/50 (74%), Gaps = 1/50 (2%)

Query: 126 DYEVKEALRVQMEVQSKLHLQVEAEKHLQIRQNAQQRYL-AMLERACKIL 174
             ++ EALR+QMEVQ +LH Q+E ++HLQIR  AQ +YL  +LE+A K L
Sbjct: 1   GMQITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTL 50

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 53.2 bits (127), Expect = 6e-08
 Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 34  KPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYR 87
           K ++ WT +LH RFV AV QLG   KA P  I+  M V+ LT  ++ SHLQKYR
Sbjct: 235 KAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYR 287

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 42.1 bits (100), Expect = 7e-06
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 36 RLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYR 87
          R  WT +  +  ++AV + G  +      I + +   G T    K+    Y 
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.91
PLN03162	526	golden-2 like transcription factor; Provisional	99.89
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.86
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.28
smart00426	68	TEA TEA domain.	91.93
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	84.08

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.91  E-value=8.9e-25  Score=159.66  Aligned_cols=49  Identities=53%  Similarity=0.805  Sum_probs=46.9

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHhHhHHHHHHHHH-HHHHHHHHhh
Q 022117          127 YEVKEALRVQMEVQSKLHLQVEAEKHLQIRQNAQQRYLA-MLERACKILT  175 (302)
Q Consensus       127 ~~i~eaLr~QmEvQrrLhEQLEVQRhLQLRIEAQGKYLq-iLEKAqe~La  175 (302)
                      ++|+||||+||||||||||||||||+||+|||||||||+ |||||+++++
T Consensus         2 ~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s   51 (51)
T PF14379_consen    2 MQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS   51 (51)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            579999999999999999999999999999999999998 9999999874

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.89  E-value=4.1e-24  Score=207.38  Aligned_cols=61  Identities=46%  Similarity=0.728  Sum_probs=58.1

Q ss_pred             cCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhccccC
Q 022117           31 SDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQS   92 (302)
Q Consensus        31 ~~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~~~~   92 (302)
                      ..+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.++.
T Consensus       232 g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~  292 (526)
T PLN03162        232 GKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRH  292 (526)
T ss_pred             CCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccc
Confidence            4789999999999999999999999 799999999999999999999999999999998763

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.86  E-value=3.8e-22  Score=148.04  Aligned_cols=56  Identities=63%  Similarity=0.978  Sum_probs=54.4

Q ss_pred             CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhcc
Q 022117           34 KPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLG   89 (302)
Q Consensus        34 K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~   89 (302)
                      |+|++||+|+|.+|++||+.||+.+.||||.|+++|++++||+.||+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            79999999999999999999998899999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.28  E-value=0.00058  Score=47.90  Aligned_cols=48  Identities=27%  Similarity=0.397  Sum_probs=41.4

Q ss_pred             CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhh
Q 022117           36 RLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYR   87 (302)
Q Consensus        36 Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYR   87 (302)
                      |-.||+|=+.+|++||.++|. +  .-+.|-+.|+ .+-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            568999999999999999992 2  6889999998 8999999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=91.93  E-value=0.17  Score=39.61  Aligned_cols=46  Identities=26%  Similarity=0.427  Sum_probs=30.1

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCCCChH-HHHhh--c-c-----------cCCC--CHHHHHHhhhh
Q 022117           38 RWTADLHDRFVDAVTQLGGPSKATPK-AIMRT--M-N-----------VKGL--TLFHLKSHLQK   85 (302)
Q Consensus        38 ~WT~eLH~rFv~AV~qLGG~~kAtPK-~Il~~--M-~-----------v~gL--T~~hVkSHLQK   85 (302)
                      +|.++|-..|++|+...- + ..+-| .+...  | |           ..|.  |+.+|.||+|.
T Consensus         5 vWp~~lE~Af~~aL~~~~-~-~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP-P-CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC-c-cCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            799999999999998775 2 22222 22211  1 1           1444  67899999985

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=84.08  E-value=2.6  Score=31.42  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=13.2

Q ss_pred             HhhHHHHHHHHHHhHhHHHHHH
Q 022117          141 SKLHLQVEAEKHLQIRQNAQQR  162 (302)
Q Consensus       141 rrLhEQLEVQRhLQLRIEAQGK  162 (302)
                      --|..|+||||+|.=.+|.|.+
T Consensus         6 EALr~QmEvQrrLhEQLEvQr~   27 (51)
T PF14379_consen    6 EALRMQMEVQRRLHEQLEVQRH   27 (51)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	302
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		6e-09

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 30 TSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLG 89
          T+  KPR+ WT +LH++F+ AV  LG   +A PK I+  MNV  LT  ++ SHLQK+R+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	4e-25
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 94.6 bits (235), Expect = 4e-25
 Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 30 TSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLG 89
          T+  KPR+ WT +LH++F+ AV  LG   +A PK I+  MNV  LT  ++ SHLQK+R+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 90 KQ 91
           +
Sbjct: 60 LK 61

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 4e-06
 Identities = 42/237 (17%), Positives = 78/237 (32%), Gaps = 56/237 (23%)

Query: 62  PKAIMRTMNVKGLTLFHLKSHLQK-YRL-----GKQSG---REMGDS-PKDASYLIESSA 111
           PK+I+    +    +   K  +    RL      KQ     + + +    +  +L+    
Sbjct: 42  PKSILSKEEID--HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 112 NDNSLPNFPASDMNDY-EVKEALRVQMEVQSKLHLQVEAEKHLQIRQNAQQRYLAMLERA 170
            +      P+     Y E ++ L    +V +K ++    + +L++RQ   +     L  A
Sbjct: 100 TE---QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL-QPYLKLRQALLE-----LRPA 150

Query: 171 CKILTD-------QILGGAVVDADSEKCKGLGTKMPRSYILDSLGFYTSQSVEVAEVQCP 223
             +L D         +   V  +   +C     KM    I     F+    + +     P
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQC-----KMDFK-I-----FW----LNLKNCNSP 195

Query: 224 EELL-----------PNLHPQRADCSTESCLTSHESSGGLTMEGSPVGGKNSILSLD 269
           E +L           PN    R+D S+   L  H     L         +N +L L 
Sbjct: 196 ETVLEMLQKLLYQIDPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.96
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	89.5
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	88.87
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	88.37
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	87.98
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	85.59
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	85.59
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	83.97
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	80.1

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.96  E-value=5.9e-30  Score=193.33  Aligned_cols=61  Identities=46%  Similarity=0.771  Sum_probs=58.1

Q ss_pred             ecCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhcccc
Q 022117           30 TSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQ   91 (302)
Q Consensus        30 ~~~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~~~   91 (302)
                      ++++|+|++||+|||++||+||++|| .|+||||.||++|+|+|||++||||||||||+...
T Consensus         1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~   61 (64)
T 1irz_A            1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999 79999999999999999999999999999999754

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.50  E-value=0.69  Score=34.08  Aligned_cols=55  Identities=16%  Similarity=0.278  Sum_probs=42.1

Q ss_pred             CCCCcccCHHHHHHHHHHHHHhCCCCCCCh---HHHHhhcccCCCCHHHHHHhhhhhhccc
Q 022117           33 PKPRLRWTADLHDRFVDAVTQLGGPSKATP---KAIMRTMNVKGLTLFHLKSHLQKYRLGK   90 (302)
Q Consensus        33 ~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtP---K~Il~~M~v~gLT~~hVkSHLQKYRl~~   90 (302)
                      ...+-.||+|=+++|++||..+| .+...|   +.|-+.  |+|=|-.+|+.|-++|-...
T Consensus         5 ~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~--~~~Rt~~qcr~r~~~~l~~~   62 (75)
T 2yum_A            5 SSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADE--LGNRTAKQVASQVQKYFIKL   62 (75)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHH--HSSSCHHHHHHHHHHHHGGG
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHH--hCCCCHHHHHHHHHHHHHHH
Confidence            34466899999999999999999 333223   344444  47899999999999997654

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=88.87  E-value=1.9  Score=32.83  Aligned_cols=49  Identities=10%  Similarity=0.087  Sum_probs=40.3

Q ss_pred             CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhc
Q 022117           34 KPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL   88 (302)
Q Consensus        34 K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl   88 (302)
                      ..+-.||+|=+.+|++||...|+    .=+.|-+.|  ++=|..+++.|-++|-+
T Consensus        16 ~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v--~~RT~~qcr~r~~~~~i   64 (79)
T 2yus_A           16 SAGREWTEQETLLLLEALEMYKD----DWNKVSEHV--GSRTQDECILHFLRLPI   64 (79)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHH--SSCCHHHHHHHHTTSCC
T ss_pred             ccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHHHhcc
Confidence            34678999999999999999993    346677765  48899999999988844

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=88.37  E-value=0.87  Score=45.56  Aligned_cols=66  Identities=26%  Similarity=0.361  Sum_probs=52.9

Q ss_pred             CCCCCCCceeeecCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhccc
Q 022117           19 HGGGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGK   90 (302)
Q Consensus        19 ~~gg~~~~~Vl~~~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~~   90 (302)
                      +.+|+++--+.....|..-+||++=|..|++||.+.|   + .=+.|-+.++-  =|..+|++|.++||...
T Consensus       363 ~~~g~~~~r~~e~~~~~~~~WT~eE~~~f~~al~~yG---k-dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~  428 (482)
T 2xag_B          363 LDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYG---R-DFQAISDVIGN--KSVVQVKNFFVNYRRRF  428 (482)
T ss_dssp             TTTTTGGGCCCCCCCCCCSCCCHHHHHHHHHHHHHHT---T-CHHHHHHHHSS--CCHHHHHHHHHHTTTTT
T ss_pred             hhcccccccCCccccccCCCCCHHHHHHHHHHHHHHC---c-CHHHHHHHhCC--CCHHHHHHHHHHHHHHh
Confidence            3467666655555667789999999999999999998   2 47788888664  49999999999998854

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=87.98  E-value=1.4  Score=32.34  Aligned_cols=52  Identities=19%  Similarity=0.351  Sum_probs=42.3

Q ss_pred             CCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhccc
Q 022117           33 PKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGK   90 (302)
Q Consensus        33 ~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~~   90 (302)
                      ...+-.||+|=++.|+++|..+|-    .=+.|-+.  ++|=|-.+|+.|.++|-...
T Consensus         6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~   57 (72)
T 2cu7_A            6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNK   57 (72)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence            445778999999999999999992    44666664  48999999999999886544

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=85.59  E-value=2.8  Score=29.71  Aligned_cols=51  Identities=22%  Similarity=0.195  Sum_probs=40.4

Q ss_pred             CCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhc
Q 022117           33 PKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL   88 (302)
Q Consensus        33 ~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl   88 (302)
                      .-.+-.||+|=.++|++||..+| .  -.=+.|-+.|  +|=|-.+++.|-++|-.
T Consensus         5 ~~~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            5 SSGDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence            34567899999999999999999 1  1235666666  68899999999888755

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=85.59  E-value=0.85  Score=35.77  Aligned_cols=57  Identities=23%  Similarity=0.292  Sum_probs=36.9

Q ss_pred             CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhh---c-c-----------c--CCCCHHHHHHhhhhhhccc
Q 022117           32 DPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRT---M-N-----------V--KGLTLFHLKSHLQKYRLGK   90 (302)
Q Consensus        32 ~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~---M-~-----------v--~gLT~~hVkSHLQKYRl~~   90 (302)
                      |++..-+|.++|-..|++|+...-=....+.  +|..   | |           .  +-=|+.+|.||||.-+..+
T Consensus         2 d~~~e~vW~~~lE~aF~eaL~~yp~~g~~k~--~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~   75 (82)
T 2hzd_A            2 DNDAEGVWSPDIEQSFQEALSIYPPCGRRKI--ILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK   75 (82)
T ss_dssp             CGGGSCCSCHHHHHHHHHHHHHSCSSSCCCC--CHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred             CCCcCCcCCHHHHHHHHHHHHHcCCCCccce--eecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence            3456678999999999999997751112222  2211   1 1           0  2337799999999876644

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=83.97  E-value=2  Score=39.50  Aligned_cols=64  Identities=27%  Similarity=0.372  Sum_probs=50.9

Q ss_pred             CCCCCceeeecCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhccc
Q 022117           21 GGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGK   90 (302)
Q Consensus        21 gg~~~~~Vl~~~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~~   90 (302)
                      ++++.--...+..|..-+||+|=++.|++|+...|-    .-..|-++  |++=|..+|++|..+||...
T Consensus       118 ~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~--VgTKT~~QcKnfY~~~kKRl  181 (235)
T 2iw5_B          118 GGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDV--IGNKSVVQVKNFFVNYRRRF  181 (235)
T ss_dssp             TTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHH--HSSCCHHHHHHHHHHTTTTT
T ss_pred             hhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHh
Confidence            555443344566678889999999999999999992    27777777  67899999999999998643

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=80.10  E-value=2.8  Score=31.48  Aligned_cols=49  Identities=14%  Similarity=0.347  Sum_probs=38.7

Q ss_pred             CCcccCHHHHHHHHHHHHHhCCCCCCChH---HHHhhcccCCCCHHHHHHhhhhhhcc
Q 022117           35 PRLRWTADLHDRFVDAVTQLGGPSKATPK---AIMRTMNVKGLTLFHLKSHLQKYRLG   89 (302)
Q Consensus        35 ~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK---~Il~~M~v~gLT~~hVkSHLQKYRl~   89 (302)
                      ..-.||.|=+++|+.|+..+++   -||.   .|-+.|   |=|..+|+.|-+++...
T Consensus         7 ~~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            7 GAPEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence            3447999999999999999983   3564   455555   67999999998887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	4e-23

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 88.1 bits (218), Expect = 4e-23
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 30 TSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 88
          T+  KPR+ WT +LH++F+ AV  LG   +A PK I+  MNV  LT  ++ SHLQK+R+
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRV 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.93
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	90.15
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	88.86

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=4.3e-27  Score=175.73  Aligned_cols=61  Identities=46%  Similarity=0.763  Sum_probs=57.6

Q ss_pred             ecCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhcccc
Q 022117           30 TSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQ   91 (302)
Q Consensus        30 ~~~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~~~   91 (302)
                      +.++|+|++||+|||++||+||++||+ ++||||.|+++|+|+|||+.||+|||||||+...
T Consensus         1 s~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~   61 (64)
T d1irza_           1 TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999985 8999999999999999999999999999999754

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.15  E-value=0.31  Score=33.38  Aligned_cols=49  Identities=20%  Similarity=0.394  Sum_probs=40.3

Q ss_pred             CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhccc
Q 022117           36 RLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGK   90 (302)
Q Consensus        36 Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~~   90 (302)
                      ..+||+|=++.|++||...|.    .=..|-+.|  |+=|..+|++|.++|-...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~ry~~~~~~~   50 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNK   50 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence            468999999999999999993    456676655  5889999999999886543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.86  E-value=0.48  Score=31.02  Aligned_cols=44  Identities=25%  Similarity=0.301  Sum_probs=35.7

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhh
Q 022117           38 RWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY   86 (302)
Q Consensus        38 ~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKY   86 (302)
                      .||.+=+.+|++||.+.| .  ..=+.|-+.|+  +=|..+++.|-++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-~--~nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-F--GNWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-T--TCHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-C--ccHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            499999999999999998 2  23466666665  66999999998887