Citrus Sinensis ID: 022130

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRIRMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYNYPADKYNEILDKEQLAADDIEEDEEEAEIEFVEGYDDLEEEEDIEDFGGLAVNKSSLDDDDVGLDDNDDDETVAVEHKRVRRESSLALRKLGNDEGGTKPKKKARVLVEVEQEDTDGRQKAVH
Secondary Structure (PSIPRED)
ccccHHHHHHHcccccEEEEEcccccccccccccccccccccccccccccEEEEEEccEEEEEEEcHHHHccccHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHEEEcccccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccccHHHHccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEccccEEEEEEEccccEccccccccccccccccccccccEEEEEEcccEEEEEEEcHHHccccHHHHHHHcccHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcHcccHHHccccEEEEccccccccHHHHHHcccccccccccccccccccccccHHHcccccHHHccccccHHHcccccccccccccccEEEEEEEEccHHHHHHHcc
Coil and Loop (DISEMBL)
MQHDEVIWQVIRHNHCSFMAkietgkfcrnpynvtgicnrsscplansryatirDHDGVFYLYMKTIERahqpnqlwervklprnYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRIRMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKgvygdiynypadkyneildkeqlaaddieeDEEEAEIEFvegyddleeeediedfgglavnksslddddvglddndddetvAVEHKRVRRESSLALRKLgndeggtkpkkKARVLVEVEQedtdgrqkavh
Flexible Loop (DISEMBL)
MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFYLYMKTIErahqpnqlwervklPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRIRMRKlalktrekimttprkekkrearreekaekaavldksiekELLERLKKGVYGDIYNYPADKYNEILDKEQLAADDIEEDEEEAEIEFVEGYDDLEEEEDIEDFGGLAVNksslddddvglddndddetvavehkrvrresslalrklgndeggtkpkkkarvlveveqedtdgrqkavh
Low Complexity Region (SEG)
MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRIRMRKLALKTREKIMTTPrkekkrearreekaekaaVLDKSIEKELLERLKKGVYGDIYNYPADKYNEILDKEQLaaddieedeeeaeiefvegyddleeeediedFGGLAVNKSSLddddvglddndddETVAVEHKRVRRESSLALRKLGNDEGGTKPKKKARVLVEVEQEDTDGRQKAVH
Disordered region (IsUnstruct)
*****VIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRIRM****************************************KELLERLKKGVYGDIYNYPADKYNEILD****************************************************************************************************************
Disordered Region (DISOPRED)
**HDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRIRM*****************************EKAAVLDKSIEKELLERLKKGVYGDIYNYPADKYN***********************FVEGYDDLEEEEDIEDFGG**************************************************************************
Disordered Region (DISEMBL)
MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRIRMRKLALKTREKIMT*******************AVLDKSIEKELLERLKKGVYGDIYNYPADKYNEILDKEQLAADDIEEDEEEAEIEFVEGYDDLEEEEDIEDFGGLAVNKSSLDDDDVGLDDNDDDETVAVEHKRVRRESSLALRKLGNDEGGTKPKKKARVLVE**************
Disordered Region (DISPRO)
***DEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRIRMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYNYPADKYNEILDKEQLAA**********EIEFVEG***********DFGG***************************************************KKKARVLVEVEQEDTDGR*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRIRMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYNYPxxxxxxxxxxxxxxxxxxxxxxxxxxxxFVEGYDDLEEEEDIEDFGGLAVNKSSLDDDDVGLDDNDDDETVAVEHKRVRRESSLALRKLGNDEGGTKPKKKARVLVEVEQEDTDGRQKAVH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q66L33	301	Protein MAK16 homolog A O	N/A	no	0.960	0.963	0.470	4e-61
Q7ZYG5	304	Protein MAK16 homolog B O	N/A	no	0.741	0.736	0.562	7e-61
Q6P7N1	300	Protein MAK16 homolog OS=	yes	no	0.745	0.75	0.548	6e-60
Q1RML7	298	Protein MAK16 homolog OS=	yes	no	0.920	0.932	0.473	6e-60
Q6NYD4	303	Protein MAK16 homolog OS=	yes	no	0.635	0.633	0.595	4e-59
Q9UTE6	302	Protein mak16 OS=Schizosa	yes	no	0.622	0.622	0.575	6e-59
Q9BXY0	300	Protein MAK16 homolog OS=	yes	no	0.927	0.933	0.466	9e-59
Q8BGS0	296	Protein MAK16 homolog OS=	yes	no	0.639	0.652	0.582	7e-57
Q55DJ3	309	Protein MAK16 homolog OS=	yes	no	0.635	0.621	0.526	2e-56
P10962	306	Protein MAK16 OS=Saccharo	yes	no	0.569	0.562	0.562	2e-51

>sp|Q66L33|MK16A_XENLA Protein MAK16 homolog A OS=Xenopus laevis GN=mak16-a PE=2 SV=1

 Score =  234 bits (598), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 145/308 (47%), Positives = 202/308 (65%), Gaps = 18/308 (5%)

Query: 1   MQHDEVIWQVIRHNH-CSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGV 59
           MQHD+VIW V+ +   CSF  K +T  FCRN YN+TG+CNRS+CPLANS+YATI++  G+
Sbjct: 1   MQHDDVIWDVVGNKQFCSFKIKTKTQNFCRNEYNITGLCNRSACPLANSQYATIKEEKGI 60

Query: 60  FYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMR 119
            YLYMKTIERA  P ++WERV+L +NYE+ALE ID+NL+YWP+F+ HK KQR TK+TQ  
Sbjct: 61  CYLYMKTIERAAFPARMWERVRLSKNYEQALEQIDENLIYWPRFIRHKCKQRFTKITQYL 120

Query: 120 IRMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYN 179
           IR+RKL LK + K++   RK ++RE RREEKA  AA LD +IEKELLERLK+G YGDIYN
Sbjct: 121 IRIRKLTLKRQRKLVPLSRKVERREKRREEKALVAAQLDNAIEKELLERLKQGAYGDIYN 180

Query: 180 YPADKYNEILDKEQLAADDIEEDEEE-------AEIEFVEGYDDLEEEEDIEDFGGLAVN 232
           +P   +++ L++++ A+      +EE        + EFVE  DD  +E D+ DF  +   
Sbjct: 181 FPIQAFDKALEQQEDASASESSADEEEEDDEEIGKREFVE--DDNVDESDLSDFEDMDKL 238

Query: 233 KSSLDDDDVGLDDNDDDETVAVEHKRVRRESSLALRKLGNDEGGTKPKKKARVLVEVEQE 292
            +S D+D    +  ++      E  + + +    L+       G   +K+ RV +E EQE
Sbjct: 239 GASGDEDKHSSESEEESSEEEEEAGKAKSKGKAPLK-------GHLIRKRPRVEIEYEQE 291

Query: 293 DTDGRQKA 300
            T+ + KA
Sbjct: 292 -TEPQHKA 298

Xenopus laevis (taxid: 8355)

>sp|Q7ZYG5|MK16B_XENLA Protein MAK16 homolog B OS=Xenopus laevis GN=mak16-b PE=2 SV=1

 Score =  234 bits (596), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 131/233 (56%), Positives = 171/233 (73%), Gaps = 9/233 (3%)

Query: 1   MQHDEVIWQVIRHNH-CSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGV 59
           MQHD+VIW V+ +   CSF  K +T  FCRN +N+TG+CNRS+CPLANS+YATI++  G+
Sbjct: 1   MQHDDVIWDVVGNKQFCSFKIKTKTQNFCRNEFNITGLCNRSACPLANSQYATIKEEKGI 60

Query: 60  FYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMR 119
            YLYMKTIERA  P ++WERV+L +NYE+ALE ID+NL+YWP+F+ HK KQR TK+TQ  
Sbjct: 61  CYLYMKTIERAAFPARMWERVRLSKNYEQALEQIDENLIYWPRFIRHKCKQRFTKITQYL 120

Query: 120 IRMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYN 179
           IR+RKL LK + K++   RK ++RE RREEKA  AA LD +IEKELLERLK+G YGDIYN
Sbjct: 121 IRIRKLTLKRQRKLVPLSRKVERREKRREEKALVAAQLDNAIEKELLERLKQGAYGDIYN 180

Query: 180 YPADKYNEILDKEQLAADDIEEDEEEAEI------EFVEGYDDLEEEEDIEDF 226
           +P   +++ L+++  A+     DEEE +       EFVE  DD  EE D+ DF
Sbjct: 181 FPIQAFDKALEQQDEASASESSDEEEEDDEESGKREFVE--DDDVEESDLSDF 231

Xenopus laevis (taxid: 8355)

>sp|Q6P7N1|MAK16_XENTR Protein MAK16 homolog OS=Xenopus tropicalis GN=mak16 PE=2 SV=1

 Score =  231 bits (588), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 124/226 (54%), Positives = 170/226 (75%), Gaps = 1/226 (0%)

Query: 1   MQHDEVIWQVIRHNH-CSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGV 59
           MQHD+VIW V+ +   CSF  K +T  FCRN YN+TG+CNRS+CPLANS+YATI++  G+
Sbjct: 1   MQHDDVIWDVVGNKQFCSFKIKTKTQNFCRNEYNITGLCNRSACPLANSQYATIKEEKGI 60

Query: 60  FYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMR 119
            YLYMKTIERA  P ++WERV+L +NYE+ALE ID++L+YWP+F+ HK KQR TK+TQ  
Sbjct: 61  CYLYMKTIERAAFPARMWERVRLSKNYEQALEQIDESLIYWPRFIRHKCKQRFTKITQYL 120

Query: 120 IRMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYN 179
           IR+RKL LK + K++   RK ++RE RREEKA  AA LD +IEKELLERLK+G YGDIYN
Sbjct: 121 IRIRKLTLKRQRKLVPLSRKVERREKRREEKALVAAQLDNAIEKELLERLKQGAYGDIYN 180

Query: 180 YPADKYNEILDKEQLAADDIEEDEEEAEIEFVEGYDDLEEEEDIED 225
           +P   +++ L++++ A+     +EEE E +   G  +  E+ED+++
Sbjct: 181 FPIQAFDKALEQQEDASASESSEEEEEEDDEESGKREFVEDEDVDE 226

Xenopus tropicalis (taxid: 8364)

>sp|Q1RML7|MAK16_BOVIN Protein MAK16 homolog OS=Bos taurus GN=MAK16 PE=2 SV=1

 Score =  231 bits (588), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 143/302 (47%), Positives = 196/302 (64%), Gaps = 24/302 (7%)

Query: 1   MQHDEVIWQVIRHNH-CSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGV 59
           MQ D+VIW  + +   CSF  + +T  FCRN Y++TG+CNRSSCPLANS+YATI++  G 
Sbjct: 1   MQSDDVIWDTLGNKQFCSFKIRTKTQSFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQ 60

Query: 60  FYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMR 119
            YLYMK IERA  P +LWERV+L +NYEKALE ID+NL+YWP+F+ HK KQR TK+TQ  
Sbjct: 61  CYLYMKVIERAAFPRRLWERVRLHKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYL 120

Query: 120 IRMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYN 179
           IR+RKL LK + K++   +K ++RE RREEKA  AA LD +IEKELLERLK+  YGDIYN
Sbjct: 121 IRIRKLTLKRQRKLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYN 180

Query: 180 YPADKYNEILDKEQLAADDIEEDEEEAEI--------EFVEGYDDLEEEEDIEDFGGLAV 231
           +P   +++ L++++  +D  + +E++ E         EFVE  DD  +E DI DF     
Sbjct: 181 FPIHAFDKALEQQEAESDSSDAEEKDDEEDEEDVGKREFVE--DDEVDESDISDF----- 233

Query: 232 NKSSLDDDDVGLDDNDDDETVAVEHKRVRRESSLALRKLGNDE-GGTKPKKKARVLVEVE 290
               +D  D   D++ DD++ + E      E +L  +  G     G   +K+A V +E E
Sbjct: 234 --EDMDKLDASSDEDQDDKSSSEEE-----EKTLDAKHKGKTPLKGPLRRKRAYVEIEYE 286

Query: 291 QE 292
           QE
Sbjct: 287 QE 288

Bos taurus (taxid: 9913)

>sp|Q6NYD4|MAK16_DANRE Protein MAK16 homolog OS=Danio rerio GN=mak16 PE=2 SV=1

 Score =  228 bits (581), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 154/193 (79%), Gaps = 1/193 (0%)

Query: 1   MQHDEVIWQVIRH-NHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGV 59
           MQHD+VIW +I + + CS+  K +T +FCRN YN+TG+CNRSSCPLANS+YATIR+  G 
Sbjct: 1   MQHDDVIWDLIGNKSFCSYKVKTKTQQFCRNEYNITGLCNRSSCPLANSQYATIREEKGQ 60

Query: 60  FYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMR 119
            +LYMK IERA  P+++WE+VKL RNY KALE ID+NL+YWP+F+ HK KQRLTK+TQ  
Sbjct: 61  CFLYMKVIERAAFPSRMWEKVKLDRNYAKALEQIDENLIYWPRFIRHKCKQRLTKITQYL 120

Query: 120 IRMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYN 179
           IR+RKL LK + K++   RK ++RE RREEKA  AA L+ +IEKELL+RLK+G YGDIYN
Sbjct: 121 IRIRKLTLKRQRKLVPLSRKVERREKRREEKALIAAQLENAIEKELLDRLKQGTYGDIYN 180

Query: 180 YPADKYNEILDKE 192
           +P + +++ ++K+
Sbjct: 181 FPINAFDKAMEKQ 193

Plays an essential role in early embryonic development.

Danio rerio (taxid: 7955)

>sp|Q9UTE6|MAK16_SCHPO Protein mak16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mak16 PE=3 SV=1

 Score =  227 bits (579), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 110/191 (57%), Positives = 140/191 (73%), Gaps = 3/191 (1%)

Query: 1   MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60
           MQ DEVIWQV+ H  CS+  K E   FCRN YNVTG+CNR SCPLANSRYAT+R+ +G  
Sbjct: 1   MQQDEVIWQVVGHEFCSYRIKGEAQNFCRNEYNVTGLCNRQSCPLANSRYATVREDNGKL 60

Query: 61  YLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRI 120
           YLYMKTIERAH P++LW+R+KL +NY KALE ID+ L+YWP   +H+ KQRLT++TQ  +
Sbjct: 61  YLYMKTIERAHFPSKLWQRIKLSKNYAKALEQIDQQLLYWPGRQIHRCKQRLTRLTQYLL 120

Query: 121 RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYNY 180
           + R+LALK +  ++    K+  REA RE KA  AA L+K+IEKEL++RLK GVYGD    
Sbjct: 121 KARRLALKHQPALIPIKPKQAHREASRERKALIAAKLEKNIEKELVKRLKSGVYGD---Q 177

Query: 181 PADKYNEILDK 191
           P +   EI +K
Sbjct: 178 PLNVNEEIWNK 188

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9BXY0|MAK16_HUMAN Protein MAK16 homolog OS=Homo sapiens GN=MAK16 PE=1 SV=2

 Score =  227 bits (578), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 141/302 (46%), Positives = 197/302 (65%), Gaps = 22/302 (7%)

Query: 1   MQHDEVIWQVIRHNH-CSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGV 59
           MQ D+VIW  + +   CSF  + +T  FCRN Y++TG+CNRSSCPLANS+YATI++  G 
Sbjct: 1   MQSDDVIWDTLGNKQFCSFKIRTKTQSFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQ 60

Query: 60  FYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMR 119
            YLYMK IERA  P +LWERV+L +NYEKALE ID+NL+YWP+F+ HK KQR TK+TQ  
Sbjct: 61  CYLYMKVIERAAFPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYL 120

Query: 120 IRMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYN 179
           IR+RKL LK + K++   +K ++RE RREEKA  AA LD +IEKELLERLK+  YGDIYN
Sbjct: 121 IRIRKLTLKRQRKLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYN 180

Query: 180 YPADKYNEILDKEQLAADDIEEDEEEAEI---------EFVEGYDDLEEEEDIEDFGGLA 230
           +P   +++ L++++  +D  + +E++ +          EFVE  D   +E DI DF  + 
Sbjct: 181 FPIHAFDKALEQQEAESDSSDTEEKDDDDDDEEDVGKREFVE--DGEVDESDISDFEDMD 238

Query: 231 VNKSSLDDDDVGLDDNDDDETVAVEHKRVRRESSLALRKLGNDEGGTKPKKKARVLVEVE 290
              +S D+D  G   ++++E  A+  K    +  + LR       G   +K+A V +E E
Sbjct: 239 KLDASSDEDQDGKSSSEEEEEKALSAK---HKGKMPLR-------GPLQRKRAYVEIEYE 288

Query: 291 QE 292
           QE
Sbjct: 289 QE 290

Homo sapiens (taxid: 9606)

>sp|Q8BGS0|MAK16_MOUSE Protein MAK16 homolog OS=Mus musculus GN=Mak16 PE=2 SV=1

 Score =  221 bits (562), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 113/194 (58%), Positives = 148/194 (76%), Gaps = 1/194 (0%)

Query: 1   MQHDEVIWQVIRHNH-CSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGV 59
           MQ D+VIW  + +   CSF  + +T  FCRN Y++TG+CNRSSCPLANS+YATI++  G 
Sbjct: 1   MQSDDVIWNTLGNKQFCSFKIRTKTQGFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQ 60

Query: 60  FYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMR 119
            YLYMK IERA  P +LWERV+L +NYEKALE ID+NL+YWP+F+ HK KQR TK+TQ  
Sbjct: 61  CYLYMKVIERAAFPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYL 120

Query: 120 IRMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYN 179
           IR+RKL LK + K++   +K ++RE RREEKA  AA LD +IEKELLERLK+  YGDIYN
Sbjct: 121 IRIRKLTLKRQRKLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYN 180

Query: 180 YPADKYNEILDKEQ 193
           +P   +++ L+K++
Sbjct: 181 FPIHAFDKALEKQE 194

Mus musculus (taxid: 10090)

>sp|Q55DJ3|MAK16_DICDI Protein MAK16 homolog OS=Dictyostelium discoideum GN=mak16l PE=3 SV=1

 Score =  219 bits (558), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 138/192 (71%)

Query: 1   MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60
           MQ D++IW VI  N CSF       KFC+N YNVTG+CN+ SCPLANSRYAT+R+ +GV 
Sbjct: 1   MQSDDIIWDVINKNFCSFKTTFNKTKFCKNEYNVTGVCNKVSCPLANSRYATVREEEGVC 60

Query: 61  YLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRI 120
           YLYMKT+ERAH PN+LWE++KL  N+ KA+E ID +L +WP  + H+ KQR  ++TQ  I
Sbjct: 61  YLYMKTVERAHTPNRLWEKIKLDPNFMKAIEQIDSHLEFWPGHMSHRVKQRYIRITQYLI 120

Query: 121 RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYNY 180
           RMRK+  + + +++   +K ++R+A RE KA  AA L  +I+KELLERL KG Y D++ +
Sbjct: 121 RMRKMRKQIKRELVPIKKKAERRDATRENKALIAAHLTTNIKKELLERLNKGTYADMHYF 180

Query: 181 PADKYNEILDKE 192
           P D  N +L+KE
Sbjct: 181 PEDIINNVLEKE 192

Dictyostelium discoideum (taxid: 44689)

>sp|P10962|MAK16_YEAST Protein MAK16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAK16 PE=1 SV=2

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 99/176 (56%), Positives = 128/176 (72%), Gaps = 4/176 (2%)

Query: 4   DEVIWQVIRHNHCSFMAKIETGK-FCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFYL 62
           DE++WQVI  + CS   K   G+ FCRN YNVTG+C R SCPLANS+YAT++  +G  YL
Sbjct: 3   DEIVWQVINQSFCSHRIKAPNGQNFCRNEYNVTGLCTRQSCPLANSKYATVKCDNGKLYL 62

Query: 63  YMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRIRM 122
           YMKT ERAH P +LWER+KL +NY KAL+ ID++L++W KF  HK KQR TK+TQ+ I  
Sbjct: 63  YMKTPERAHTPAKLWERIKLSKNYTKALQQIDEHLLHWSKFFRHKCKQRFTKLTQVMITE 122

Query: 123 RKLALKTREK--IMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGD 176
           R+LAL+  E+  +   P K K+RE  RE KA  AA ++K+IEKEL++RLK G YGD
Sbjct: 123 RRLALREEERHYVGVAP-KVKRREQNRERKALVAAKIEKAIEKELMDRLKSGAYGD 177

Its role might be as part of the apparatus concerned with the nuclear events of the cell cycle.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
298204919	296	unnamed protein product [Vitis vinifera]	0.976	0.996	0.774	1e-114
255589586	304	maintenance of killer 16 (mak16) protein	0.996	0.990	0.770	1e-114
297733710	296	unnamed protein product [Vitis vinifera]	0.976	0.996	0.777	1e-114
359491209	297	PREDICTED: protein MAK16 homolog A [Viti	0.976	0.993	0.778	1e-113
359487840	297	PREDICTED: protein MAK16 homolog B-like	0.973	0.989	0.745	1e-112
356517458	304	PREDICTED: protein mak16-like [Glycine m	0.996	0.990	0.737	1e-110
449468816	301	PREDICTED: protein MAK16 homolog A-like	0.880	0.883	0.791	1e-107
224119416	214	predicted protein [Populus trichocarpa]	0.692	0.976	0.824	2e-99
357455195	333	MAK16-like protein [Medicago truncatula]	0.986	0.894	0.582	2e-93
9295711	301	F26F24.12 [Arabidopsis thaliana]	0.960	0.963	0.668	1e-92

>gi|298204919|emb|CBI34226.3| unnamed protein product [Vitis vinifera]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/301 (77%), Positives = 256/301 (85%), Gaps = 6/301 (1%)

Query: 1   MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60
           MQHDEVIWQVIRHNHCSFM KI TG FCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF
Sbjct: 1   MQHDEVIWQVIRHNHCSFMTKITTGNFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60

Query: 61  YLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRI 120
           YLYMKTIERAH PN+LWERVKLPRNY KALE+IDK+LM+WPK LVHKTKQRLTKMTQMRI
Sbjct: 61  YLYMKTIERAHMPNKLWERVKLPRNYGKALELIDKHLMFWPKLLVHKTKQRLTKMTQMRI 120

Query: 121 RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYNY 180
           RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLK+GVYGDIYNY
Sbjct: 121 RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKRGVYGDIYNY 180

Query: 181 PADKYNEILDKEQLAADDIEEDEEEAEIEFVEGYDDLEEEEDIEDFGGLAVNKSSLDDDD 240
           P  +YN++LD E L A   +E+EEE EIE+VEGY++LEEE+DIEDFGGL +      D+ 
Sbjct: 181 PVKEYNKVLDMEGLQAASEDEEEEEPEIEYVEGYEELEEEDDIEDFGGLEI------DES 234

Query: 241 VGLDDNDDDETVAVEHKRVRRESSLALRKLGNDEGGTKPKKKARVLVEVEQEDTDGRQKA 300
           +  +D DD+E   ++ KRVRR S  A  KL  DE G   KK+ RVLVEVE E TD RQKA
Sbjct: 235 LKDEDLDDEEMDLIDRKRVRRGSGSAHGKLDKDERGANLKKRPRVLVEVEHEGTDERQKA 294

Query: 301 V 301
           +
Sbjct: 295 I 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255589586|ref|XP_002535013.1| maintenance of killer 16 (mak16) protein, putative [Ricinus communis] gi|223524194|gb|EEF27371.1| maintenance of killer 16 (mak16) protein, putative [Ricinus communis]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/305 (77%), Positives = 253/305 (82%), Gaps = 4/305 (1%)

Query: 1   MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60
           MQHDEVIWQVIRHNHCSFMAKI TG FCRNPYNVTG+CNRSSCPLANSRYATIRDHDGVF
Sbjct: 1   MQHDEVIWQVIRHNHCSFMAKITTGNFCRNPYNVTGVCNRSSCPLANSRYATIRDHDGVF 60

Query: 61  YLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRI 120
           YLYMKTIERAH+PN LWERVKLPRNYEKALEIIDK+LMYWPK LVHK KQRLTKMTQMRI
Sbjct: 61  YLYMKTIERAHKPNALWERVKLPRNYEKALEIIDKHLMYWPKLLVHKVKQRLTKMTQMRI 120

Query: 121 RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYNY 180
           RMRKLALKTREKI+T PR   KREARREEKAEKAAVL+KSIEKELLERL KGVYGDIYNY
Sbjct: 121 RMRKLALKTREKIVTAPRMVGKREARREEKAEKAAVLEKSIEKELLERLNKGVYGDIYNY 180

Query: 181 PADKYNEILDKEQLAADD--IEEDEEEAEIEFVEGYDDLEEEEDIEDFGGLAVNKSSLDD 238
           PADK+N++LD + L   D   EE+EEE  +E+VEGYDDLEEE+  EDFGG  ++ +   D
Sbjct: 181 PADKFNKLLDLDNLQVADEEEEEEEEEPVVEYVEGYDDLEEEDI-EDFGGFGISDADAFD 239

Query: 239 DDVGLDDNDDDETVA-VEHKRVRRESSLALRKLGNDEGGTKPKKKARVLVEVEQEDTDGR 297
            D   +D DD ET   V H RVR E  LA RK G DE G K KKKARV+VEVE ED   R
Sbjct: 240 ADDAGEDGDDAETNGKVGHIRVRSEFDLASRKHGKDEPGAKLKKKARVIVEVEHEDASER 299

Query: 298 QKAVH 302
           QKAVH
Sbjct: 300 QKAVH 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733710|emb|CBI14957.3| unnamed protein product [Vitis vinifera]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/301 (77%), Positives = 256/301 (85%), Gaps = 6/301 (1%)

Query: 1   MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60
           MQHDEVIWQVIRHNHCSFM KI TG FCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF
Sbjct: 1   MQHDEVIWQVIRHNHCSFMTKITTGNFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60

Query: 61  YLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRI 120
           YLYMKTIERAH PN+LWERVKLPRNY KALE+IDK+LM+WPK LVHKTKQRLTKMTQMRI
Sbjct: 61  YLYMKTIERAHMPNKLWERVKLPRNYGKALELIDKHLMFWPKLLVHKTKQRLTKMTQMRI 120

Query: 121 RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYNY 180
           RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLK+GVYGDIYNY
Sbjct: 121 RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKRGVYGDIYNY 180

Query: 181 PADKYNEILDKEQLAADDIEEDEEEAEIEFVEGYDDLEEEEDIEDFGGLAVNKSSLDDDD 240
           P  +YN++LD E L A   +E+EEE EIE+VEGY++LEEE+DIEDFGGL +      D+ 
Sbjct: 181 PVKEYNKVLDMEGLQAASEDEEEEEPEIEYVEGYEELEEEDDIEDFGGLEI------DES 234

Query: 241 VGLDDNDDDETVAVEHKRVRRESSLALRKLGNDEGGTKPKKKARVLVEVEQEDTDGRQKA 300
           +  +D DDDE   ++ KRVRR S  A  KL  DE G   KK+ RVLVEVE E TD RQKA
Sbjct: 235 LKDEDLDDDEMDLIDRKRVRRGSGSAHGKLDKDERGANLKKRPRVLVEVEHEGTDERQKA 294

Query: 301 V 301
           +
Sbjct: 295 I 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491209|ref|XP_002277651.2| PREDICTED: protein MAK16 homolog A [Vitis vinifera]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 235/302 (77%), Positives = 258/302 (85%), Gaps = 7/302 (2%)

Query: 1   MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60
           MQHDEVIWQVIRHNHCSFM KI TG FCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF
Sbjct: 1   MQHDEVIWQVIRHNHCSFMTKITTGNFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60

Query: 61  YLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRI 120
           YLYMKTIERAH PN+LWERVKLPRNY KALE+IDK+LM+WPK LVHKTKQRLTKMTQMRI
Sbjct: 61  YLYMKTIERAHMPNKLWERVKLPRNYGKALELIDKHLMFWPKLLVHKTKQRLTKMTQMRI 120

Query: 121 RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYNY 180
           RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLK+GVYGDIYNY
Sbjct: 121 RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKRGVYGDIYNY 180

Query: 181 PADKYNEILDKEQL-AADDIEEDEEEAEIEFVEGYDDLEEEEDIEDFGGLAVNKSSLDDD 239
           P  +YN++LD E L AA + EE+E+E EIE+VEGY++LEEE+DIEDFGGL +      D+
Sbjct: 181 PVKEYNKVLDMEGLQAASEDEEEEQEPEIEYVEGYEELEEEDDIEDFGGLEI------DE 234

Query: 240 DVGLDDNDDDETVAVEHKRVRRESSLALRKLGNDEGGTKPKKKARVLVEVEQEDTDGRQK 299
            +  +D DDDE   ++ KRVRR S  A  KL  DE G   KK+ RVLVEVE E TD RQK
Sbjct: 235 SLKDEDLDDDEMDLIDRKRVRRGSGSAHGKLDKDERGANLKKRPRVLVEVEHEGTDERQK 294

Query: 300 AV 301
           A+
Sbjct: 295 AI 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487840|ref|XP_003633661.1| PREDICTED: protein MAK16 homolog B-like [Vitis vinifera]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/303 (74%), Positives = 248/303 (81%), Gaps = 9/303 (2%)

Query: 1   MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60
           MQHDEVIWQVIRHNHCSFM KI TG FCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF
Sbjct: 1   MQHDEVIWQVIRHNHCSFMTKITTGNFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60

Query: 61  YLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRI 120
           YLYMKTIERAH PN+LWERVKLPRNY KALE+IDK+LM+WPK LVHKTKQRLTKMTQMRI
Sbjct: 61  YLYMKTIERAHMPNKLWERVKLPRNYGKALELIDKHLMFWPKLLVHKTKQRLTKMTQMRI 120

Query: 121 RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYNY 180
           RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLK+GVYGDIYNY
Sbjct: 121 RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKRGVYGDIYNY 180

Query: 181 PADKYNEILDKEQLAADDIEEDEEEAEIEFVEGYDDLEEEEDIEDFGGLAVNKSSLDDDD 240
           P  +YN++LD E L A   +E+EE         Y++LEEE+DIEDFGGL +      DD+
Sbjct: 181 PVKEYNKVLDMEGLQAASEDEEEEPEIEYVEG-YEELEEEDDIEDFGGLEI------DDN 233

Query: 241 VGLDDNDDDETVA--VEHKRVRRESSLALRKLGNDEGGTKPKKKARVLVEVEQEDTDGRQ 298
           +  DD  +D+     ++ KRVRR S  A  KL  DE G   KK+ RVLVEVE E TD RQ
Sbjct: 234 IADDDMGEDDEEMDLIDRKRVRRGSGSAHGKLDKDERGANLKKRPRVLVEVEHEGTDERQ 293

Query: 299 KAV 301
           KA+
Sbjct: 294 KAI 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517458|ref|XP_003527404.1| PREDICTED: protein mak16-like [Glycine max]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/305 (73%), Positives = 257/305 (84%), Gaps = 4/305 (1%)

Query: 1   MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60
           MQHDEVIWQVIRHNHCS+MAKI TG FCRNPYNVTG+CNRSSCPLANSRYATIRD +GVF
Sbjct: 1   MQHDEVIWQVIRHNHCSYMAKIATGNFCRNPYNVTGVCNRSSCPLANSRYATIRDDNGVF 60

Query: 61  YLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRI 120
           YLYMKTIERAH P  LWERVKLPRNYEKALEIIDK+++YWPK L+HK KQRLTKMTQMRI
Sbjct: 61  YLYMKTIERAHMPKDLWERVKLPRNYEKALEIIDKHMLYWPKLLIHKIKQRLTKMTQMRI 120

Query: 121 RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVY--GDIY 178
           RMRKLALKTREKIMTTPRKEKKREARREEKAEKAA+L+KSIEKELLERL+KGVY   DIY
Sbjct: 121 RMRKLALKTREKIMTTPRKEKKREARREEKAEKAALLEKSIEKELLERLQKGVYQQSDIY 180

Query: 179 NYPADKYNEILDKEQLAADDIEEDEEEAEIEFVEGYDDLEEEEDIEDFGGLAVNKSSLD- 237
           NYP ++YN++LD E+L   D EEDEEE E+E+VEGYD+LEEEED+EDFGG A  KS  D 
Sbjct: 181 NYPLEEYNKVLDMEKLQIADEEEDEEEPEVEYVEGYDELEEEEDMEDFGGFATLKSQGDF 240

Query: 238 DDDVGLDDNDDDETVAVEHKRVRRESSLALRKLGNDEGGTKPKKKARVLVEVEQEDTDGR 297
           DDD   +  DD+E  A++  R +R+ +L+ +KL  +  G+K  KK RVLVEVE+ED   R
Sbjct: 241 DDDENAESTDDEEEEAIDQSRAKRKMALSSKKLEKNGLGSKL-KKTRVLVEVEREDAGER 299

Query: 298 QKAVH 302
           Q+ V 
Sbjct: 300 QRMVQ 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468816|ref|XP_004152117.1| PREDICTED: protein MAK16 homolog A-like [Cucumis sativus] gi|449484671|ref|XP_004156947.1| PREDICTED: protein MAK16 homolog A-like [Cucumis sativus]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/274 (79%), Positives = 240/274 (87%), Gaps = 8/274 (2%)

Query: 1   MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60
           MQHDEVIWQVIRHNHCSFMAKI TGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF
Sbjct: 1   MQHDEVIWQVIRHNHCSFMAKITTGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60

Query: 61  YLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRI 120
           YLYMKTIERAH+PN+LWERVKLPRNYEK+LE+IDK+LMYWPK LVHKTKQRLTKMTQMRI
Sbjct: 61  YLYMKTIERAHKPNELWERVKLPRNYEKSLELIDKHLMYWPKILVHKTKQRLTKMTQMRI 120

Query: 121 RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYNY 180
           RMRKLALKTREKIMTTPRKE KREARRE+KAEKAA+LDKSIEKELLERLKKGVYGDIYNY
Sbjct: 121 RMRKLALKTREKIMTTPRKEIKREARREQKAEKAALLDKSIEKELLERLKKGVYGDIYNY 180

Query: 181 PADKYNEILDKEQLAADDIEEDEEEAEIEFVEGYDDLEEEEDIEDFGGLAVN----KSSL 236
           P + YNE+L  E        E+EEE EIE+VEGY++LEEEED+EDFGGLA++     +  
Sbjct: 181 PVEAYNEVL--EMEELQAASEEEEEPEIEYVEGYEELEEEEDMEDFGGLAIHDQDADADA 238

Query: 237 DDDDVGLDDNDDDETVAVEHKRVRRESSLALRKL 270
           D+D  GLD  +D E + V  KR R+ES+ +LRKL
Sbjct: 239 DEDSDGLD--EDVEDIEVPRKRGRKESTFSLRKL 270

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119416|ref|XP_002318067.1| predicted protein [Populus trichocarpa] gi|222858740|gb|EEE96287.1| predicted protein [Populus trichocarpa]

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 174/211 (82%), Positives = 191/211 (90%), Gaps = 2/211 (0%)

Query: 1   MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60
           MQHDEVIWQVIRHNHCSFMAKI TG FCRNPYN+TG+CNRSSCPLANSRYATIRDHDGVF
Sbjct: 1   MQHDEVIWQVIRHNHCSFMAKITTGNFCRNPYNITGVCNRSSCPLANSRYATIRDHDGVF 60

Query: 61  YLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRI 120
           YLYMKTIERAH+PN+LWERVKLPRNYEKALEIIDK+LMYWPKFLVHK KQRLTKMTQMRI
Sbjct: 61  YLYMKTIERAHKPNELWERVKLPRNYEKALEIIDKHLMYWPKFLVHKAKQRLTKMTQMRI 120

Query: 121 RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYNY 180
           RMRKLALKTREKIMTTPRKE KRE+RRE+KAE AA LDKSIEKELLERL  G+YGDI+N 
Sbjct: 121 RMRKLALKTREKIMTTPRKEIKRESRREKKAETAAELDKSIEKELLERLNGGLYGDIHNI 180

Query: 181 PADKYNEILDKEQLAADDIEEDEEEAEIEFV 211
             + +N+ILD+ +L A  + EDEE  E+ F+
Sbjct: 181 LPEHFNKILDENELHA--VSEDEEYEEVCFL 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455195|ref|XP_003597878.1| MAK16-like protein [Medicago truncatula] gi|87162919|gb|ABD28714.1| Mak16 protein [Medicago truncatula] gi|355486926|gb|AES68129.1| MAK16-like protein [Medicago truncatula]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 195/335 (58%), Positives = 237/335 (70%), Gaps = 37/335 (11%)

Query: 1   MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60
           MQHDEVIWQVIRHNHCSFM KI TG FCRNPYNVTGICNRSSCPLANSRYATIR+  GVF
Sbjct: 1   MQHDEVIWQVIRHNHCSFMTKITTGNFCRNPYNVTGICNRSSCPLANSRYATIREDKGVF 60

Query: 61  YLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRI 120
           YLYMKTIERAH P  LWERVKLPRNYE+AL +IDK+LMYWPK LVHK KQRLTKMTQMRI
Sbjct: 61  YLYMKTIERAHTPKDLWERVKLPRNYEQALGVIDKHLMYWPKLLVHKIKQRLTKMTQMRI 120

Query: 121 RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVY------ 174
           RMRKLALKTRE+I+T PRKE KRE+RRE KA+ AA ++K+IE EL +RL++GVY      
Sbjct: 121 RMRKLALKTREQIITLPRKETKRESRREAKAQTAAAIEKAIENELTKRLEEGVYADKREV 180

Query: 175 ---------------------------GDIYNYPADKYNEILDKEQLAADDIEEDEEEAE 207
                                      G+I+NYP + Y ++LD E+L   D E++EE   
Sbjct: 181 RTEAEVETEKQIELEIVGRLQNVGSQPGEIFNYPTEAYYKVLDMEKLQPADEEDEEEAEV 240

Query: 208 IEFVEGYDDLEEEEDIEDFGGLAVNKSSLDD-DDVGLDDNDDDETVAVEHKRVRRESSLA 266
              VEGY+  EEE+D+EDFG  A+++S  +D D      ++D+ET A   ++ +R+ +LA
Sbjct: 241 EY-VEGYEL-EEEDDMEDFGAFAIHESRGNDADHENAGSSEDEETEARNQRKAKRKMTLA 298

Query: 267 LRKLGNDEGGTKPKKKARVLVEVEQEDTDGRQKAV 301
            +KL  D   TK  KK +VL+EVE +D   RQ+ V
Sbjct: 299 SKKLEKDALDTK-SKKTKVLIEVEHDDAYERQRLV 332

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9295711|gb|AAF87017.1|AC005292_26 F26F24.12 [Arabidopsis thaliana]

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 202/302 (66%), Positives = 234/302 (77%), Gaps = 12/302 (3%)

Query: 1   MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60
           MQHDEVIWQVIRH HCS+MAKIETG FCRN YNVTGICNRSSCPLANSRYATIRDHDGVF
Sbjct: 1   MQHDEVIWQVIRHKHCSYMAKIETGIFCRNQYNVTGICNRSSCPLANSRYATIRDHDGVF 60

Query: 61  YLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRI 120
           YLYMKTIERAH PN+LWERVKLP NYEKALE+IDK+L+YWPK L HK KQRLTKMTQMRI
Sbjct: 61  YLYMKTIERAHMPNKLWERVKLPVNYEKALEMIDKHLLYWPKLLQHKVKQRLTKMTQMRI 120

Query: 121 RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVY-GDIYN 179
           RMRKLALKTRE ++TTPR++ KRE+RREEKA KAA LDK+IE EL+ERLKKG+Y  +IYN
Sbjct: 121 RMRKLALKTREVVVTTPRRQIKRESRREEKAIKAAQLDKAIETELMERLKKGIYPTEIYN 180

Query: 180 YPADKYNEILDKEQLAAD---DIEEDEEEAEIEFVEGYDDLEEEEDIEDFGGLAVNKSSL 236
                +N++LD+E    D     EE+E   E    +   + EEEED+EDF GL   +S L
Sbjct: 181 LSDSVFNKLLDREIETNDEVEKEEEEEGVIEYVEGDDELEAEEEEDMEDFSGLPSKESYL 240

Query: 237 DDDDVGLDDNDDDETVAVEHKRVRRESSLALRKLGNDEGGTKPKKKARVLVEVEQEDTDG 296
           + DD   +D+DD E   V HK+ R     AL+K  +D+ G K KKK RV+VEVEQED D 
Sbjct: 241 EGDDHDDEDDDDAEEQVVIHKKGR-----ALKK--SDDNG-KAKKKPRVVVEVEQEDADT 292

Query: 297 RQ 298
           R+
Sbjct: 293 RR 294

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
TAIR|locus:2028070	303	AT1G23280 "AT1G23280" [Arabido	0.635	0.633	0.735	1.5e-81
ZFIN|ZDB-GENE-020419-35	305	mak16 "MAK16 homolog (S. cerev	0.635	0.629	0.533	3.3e-57
MGI|MGI:1915170	296	Mak16 "MAK16 homolog (S. cerev	0.639	0.652	0.525	2.9e-54
UNIPROTKB|Q9BXY0	300	MAK16 "Protein MAK16 homolog"	0.639	0.643	0.520	6.1e-54
UNIPROTKB|Q1RML7	298	MAK16 "Protein MAK16 homolog"	0.639	0.647	0.520	6.1e-54
POMBASE|SPAC222.06	302	mak16 "nuclear HMG-like acidic	0.625	0.625	0.521	4.2e-53
DICTYBASE|DDB_G0269642	309	mak16l "MAK16-like protein" [D	0.635	0.621	0.479	4.2e-51
CGD|CAL0006057	315	MAK16 [Candida albicans (taxid	0.572	0.549	0.502	7.7e-50
UNIPROTKB|Q59P36	315	MAK16 "Putative uncharacterize	0.572	0.549	0.502	7.7e-50
FB|FBgn0030067	343	Rbm13 "RNA-binding motif prote	0.642	0.565	0.458	2e-49

TAIR|locus:2028070 AT1G23280 "AT1G23280" [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
 Identities = 142/193 (73%), Positives = 157/193 (81%)

Query:     1 MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60
             MQHDEVIWQVIRH HCS+MAKIETG FCRN YNVTGICNRSSCPLANSRYATIRDHDGVF
Sbjct:     1 MQHDEVIWQVIRHKHCSYMAKIETGIFCRNQYNVTGICNRSSCPLANSRYATIRDHDGVF 60

Query:    61 YLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRI 120
             YLYMKTIERAH PN+LWERVKLP NYEKALE+IDK+L+YWPK L HK KQRLTKMTQMRI
Sbjct:    61 YLYMKTIERAHMPNKLWERVKLPVNYEKALEMIDKHLLYWPKLLQHKVKQRLTKMTQMRI 120

Query:   121 RMRKLALKTREKIMTTPXXXXXXXXXXXXXXXXXXVLDKSIEKELLERLKKGVYG-DIYN 179
             RMRKLALKTRE ++TTP                   LDK+IE EL+ERLKKG+Y  +IYN
Sbjct:   121 RMRKLALKTREVVVTTPRRQIKRESRREEKAIKAAQLDKAIETELMERLKKGIYPTEIYN 180

Query:   180 YPADKYNEILDKE 192
                  +N++LD+E
Sbjct:   181 LSDSVFNKLLDRE 193

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0001510 "RNA methylation" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-020419-35 mak16 "MAK16 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 560 (202.2 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
 Identities = 103/193 (53%), Positives = 140/193 (72%)

Query:     1 MQHDEVIWQVIRH-NHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGV 59
             MQHD+VIW +I + + CS+  K +T +FCRN YN+TG+CNRSSCPLANS+YATIR+  G 
Sbjct:     1 MQHDDVIWDLIGNKSFCSYKVKTKTQQFCRNEYNITGLCNRSSCPLANSQYATIREEKGQ 60

Query:    60 FYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMR 119
              +LYMK IERA  P+++WE+VKL RNY KALE ID+NL+YWP+F+ HK KQRLTK+TQ  
Sbjct:    61 CFLYMKVIERAAFPSRMWEKVKLDRNYAKALEQIDENLIYWPRFIRHKCKQRLTKITQYL 120

Query:   120 IRMRKLALKTREKIMTTPXXXXXXXXXXXXXXXXXXVLDKSIEKELLERLKKGVYGDIYN 179
             IR+RKL LK + K++                      L+ +IEKELL+RLK+G YGDIYN
Sbjct:   121 IRIRKLTLKRQRKLVPLSRKVERREKRREEKALIAAQLENAIEKELLDRLKQGTYGDIYN 180

Query:   180 YPADKYNEILDKE 192
             +P + +++ ++K+
Sbjct:   181 FPINAFDKAMEKQ 193

GO:0005634 "nucleus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:1915170 Mak16 "MAK16 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 540 (195.1 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
 Identities = 102/194 (52%), Positives = 134/194 (69%)

Query:     1 MQHDEVIWQVIRHNH-CSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGV 59
             MQ D+VIW  + +   CSF  + +T  FCRN Y++TG+CNRSSCPLANS+YATI++  G 
Sbjct:     1 MQSDDVIWNTLGNKQFCSFKIRTKTQGFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQ 60

Query:    60 FYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMR 119
              YLYMK IERA  P +LWERV+L +NYEKALE ID+NL+YWP+F+ HK KQR TK+TQ  
Sbjct:    61 CYLYMKVIERAAFPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYL 120

Query:   120 IRMRKLALKTREKIMTTPXXXXXXXXXXXXXXXXXXVLDKSIEKELLERLKKGVYGDIYN 179
             IR+RKL LK + K++                      LD +IEKELLERLK+  YGDIYN
Sbjct:   121 IRIRKLTLKRQRKLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYN 180

Query:   180 YPADKYNEILDKEQ 193
             +P   +++ L+K++
Sbjct:   181 FPIHAFDKALEKQE 194

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9BXY0 MAK16 "Protein MAK16 homolog" [Homo sapiens (taxid:9606)]

 Score = 538 (194.4 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
 Identities = 101/194 (52%), Positives = 134/194 (69%)

Query:     1 MQHDEVIWQVIRHNH-CSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGV 59
             MQ D+VIW  + +   CSF  + +T  FCRN Y++TG+CNRSSCPLANS+YATI++  G 
Sbjct:     1 MQSDDVIWDTLGNKQFCSFKIRTKTQSFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQ 60

Query:    60 FYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMR 119
              YLYMK IERA  P +LWERV+L +NYEKALE ID+NL+YWP+F+ HK KQR TK+TQ  
Sbjct:    61 CYLYMKVIERAAFPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYL 120

Query:   120 IRMRKLALKTREKIMTTPXXXXXXXXXXXXXXXXXXVLDKSIEKELLERLKKGVYGDIYN 179
             IR+RKL LK + K++                      LD +IEKELLERLK+  YGDIYN
Sbjct:   121 IRIRKLTLKRQRKLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYN 180

Query:   180 YPADKYNEILDKEQ 193
             +P   +++ L++++
Sbjct:   181 FPIHAFDKALEQQE 194

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q1RML7 MAK16 "Protein MAK16 homolog" [Bos taurus (taxid:9913)]

 Score = 537 (194.1 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
 Identities = 101/194 (52%), Positives = 134/194 (69%)

Query:     1 MQHDEVIWQVIRHNH-CSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGV 59
             MQ D+VIW  + +   CSF  + +T  FCRN Y++TG+CNRSSCPLANS+YATI++  G 
Sbjct:     1 MQSDDVIWDTLGNKQFCSFKIRTKTQSFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQ 60

Query:    60 FYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMR 119
              YLYMK IERA  P +LWERV+L +NYEKALE ID+NL+YWP+F+ HK KQR TK+TQ  
Sbjct:    61 CYLYMKVIERAAFPRRLWERVRLHKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYL 120

Query:   120 IRMRKLALKTREKIMTTPXXXXXXXXXXXXXXXXXXVLDKSIEKELLERLKKGVYGDIYN 179
             IR+RKL LK + K++                      LD +IEKELLERLK+  YGDIYN
Sbjct:   121 IRIRKLTLKRQRKLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYN 180

Query:   180 YPADKYNEILDKEQ 193
             +P   +++ L++++
Sbjct:   181 FPIHAFDKALEQQE 194

GO:0005730 "nucleolus" evidence=IEA

POMBASE|SPAC222.06 mak16 "nuclear HMG-like acidic protein Mak16 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 525 (189.9 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
 Identities = 99/190 (52%), Positives = 130/190 (68%)

Query:     1 MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60
             MQ DEVIWQV+ H  CS+  K E   FCRN YNVTG+CNR SCPLANSRYAT+R+ +G  
Sbjct:     1 MQQDEVIWQVVGHEFCSYRIKGEAQNFCRNEYNVTGLCNRQSCPLANSRYATVREDNGKL 60

Query:    61 YLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRI 120
             YLYMKTIERAH P++LW+R+KL +NY KALE ID+ L+YWP   +H+ KQRLT++TQ  +
Sbjct:    61 YLYMKTIERAHFPSKLWQRIKLSKNYAKALEQIDQQLLYWPGRQIHRCKQRLTRLTQYLL 120

Query:   121 RMRKLALKTREKIMTTPXXXXXXXXXXXXXXXXXXVLDKSIEKELLERLKKGVYGDI-YN 179
             + R+LALK +  ++                      L+K+IEKEL++RLK GVYGD   N
Sbjct:   121 KARRLALKHQPALIPIKPKQAHREASRERKALIAAKLEKNIEKELVKRLKSGVYGDQPLN 180

Query:   180 YPADKYNEIL 189
                + +N++L
Sbjct:   181 VNEEIWNKVL 190

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0042254 "ribosome biogenesis" evidence=ISS

DICTYBASE|DDB_G0269642 mak16l "MAK16-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 511 (184.9 bits), Expect = 4.2e-51, Sum P(2) = 4.2e-51
 Identities = 92/192 (47%), Positives = 125/192 (65%)

Query:     1 MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60
             MQ D++IW VI  N CSF       KFC+N YNVTG+CN+ SCPLANSRYAT+R+ +GV 
Sbjct:     1 MQSDDIIWDVINKNFCSFKTTFNKTKFCKNEYNVTGVCNKVSCPLANSRYATVREEEGVC 60

Query:    61 YLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRI 120
             YLYMKT+ERAH PN+LWE++KL  N+ KA+E ID +L +WP  + H+ KQR  ++TQ  I
Sbjct:    61 YLYMKTVERAHTPNRLWEKIKLDPNFMKAIEQIDSHLEFWPGHMSHRVKQRYIRITQYLI 120

Query:   121 RMRKLALKTREKIMTTPXXXXXXXXXXXXXXXXXXVLDKSIEKELLERLKKGVYGDIYNY 180
             RMRK+  + + +++                      L  +I+KELLERL KG Y D++ +
Sbjct:   121 RMRKMRKQIKRELVPIKKKAERRDATRENKALIAAHLTTNIKKELLERLNKGTYADMHYF 180

Query:   181 PADKYNEILDKE 192
             P D  N +L+KE
Sbjct:   181 PEDIINNVLEKE 192

GO:0003674 "molecular_function" evidence=ND

GO:0042273 "ribosomal large subunit biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA

CGD|CAL0006057 MAK16 [Candida albicans (taxid:5476)]

 Score = 480 (174.0 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
 Identities = 89/177 (50%), Positives = 116/177 (65%)

Query:     4 DEVIWQVIRHNHCSFMAKIETGK-FCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFYL 62
             D+++WQ I H  C+F  K + G+ FCRN YNV+G+CNR SCPLANSRYAT+++  G  YL
Sbjct:     3 DDIVWQTINHQFCAFKVKTDKGQNFCRNEYNVSGLCNRQSCPLANSRYATVKNVGGKLYL 62

Query:    63 YMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRIRM 122
             YMKT ER H PN+ WER+KL +NY KAL+ ID+ L YW KFL+HK KQR T++TQ+ I  
Sbjct:    63 YMKTAERTHMPNRWWERIKLSKNYNKALKQIDERLQYWQKFLIHKCKQRFTRLTQVAITE 122

Query:   123 RKLALKTREK---IMTTPXXXXXXXXXXXXXXXXXXVLDKSIEKELLERLKKGVYGD 176
             R+LAL+  +     +                      ++K+IEKELLERLK G YGD
Sbjct:   123 RRLALQEGDNERHYVGVKNKVKRREQNRERKALAAAKIEKAIEKELLERLKSGAYGD 179

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030687 "preribosome, large subunit precursor" evidence=IEA

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

UNIPROTKB|Q59P36 MAK16 "Putative uncharacterized protein MAK16" [Candida albicans SC5314 (taxid:237561)]

 Score = 480 (174.0 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
 Identities = 89/177 (50%), Positives = 116/177 (65%)

Query:     4 DEVIWQVIRHNHCSFMAKIETGK-FCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFYL 62
             D+++WQ I H  C+F  K + G+ FCRN YNV+G+CNR SCPLANSRYAT+++  G  YL
Sbjct:     3 DDIVWQTINHQFCAFKVKTDKGQNFCRNEYNVSGLCNRQSCPLANSRYATVKNVGGKLYL 62

Query:    63 YMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRIRM 122
             YMKT ER H PN+ WER+KL +NY KAL+ ID+ L YW KFL+HK KQR T++TQ+ I  
Sbjct:    63 YMKTAERTHMPNRWWERIKLSKNYNKALKQIDERLQYWQKFLIHKCKQRFTRLTQVAITE 122

Query:   123 RKLALKTREK---IMTTPXXXXXXXXXXXXXXXXXXVLDKSIEKELLERLKKGVYGD 176
             R+LAL+  +     +                      ++K+IEKELLERLK G YGD
Sbjct:   123 RRLALQEGDNERHYVGVKNKVKRREQNRERKALAAAKIEKAIEKELLERLKSGAYGD 179

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0030067 Rbm13 "RNA-binding motif protein 13" [Drosophila melanogaster (taxid:7227)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 89/194 (45%), Positives = 131/194 (67%)

Query:     1 MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60
             MQHD+V+W +I  + CS   K +T  FCR+ YN+TG+C R +CPLANS+YAT+R+  G+ 
Sbjct:     1 MQHDDVVWSIINKSFCSHKVKTDTRTFCRHEYNLTGLCTRRTCPLANSQYATVREEKGII 60

Query:    61 YLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRI 120
             YL++KT ERAH P++LWER+KL RN+EKA+E I++NL++WPK+++ K KQR  K+TQ  I
Sbjct:    61 YLFIKTAERAHMPSKLWERIKLSRNFEKAIEQINENLVFWPKYMIAKNKQRFLKITQYLI 120

Query:   121 RMRKLALKTREKIMTTPXXXXXXXXXXXXXXXXXXVLDKSIEKELLERLKKGVYGDIYNY 180
             RMR+L L+ ++ I+                      +D  IEK L++RLK G Y DIYN+
Sbjct:   121 RMRRLKLRRQKLIVPLSTKIERREARREEKALVAAKIDNHIEKALMDRLKNGTYRDIYNF 180

Query:   181 PADKYNEILDKEQL 194
                 +N+ L+ E++
Sbjct:   181 SQTAFNKALEAERV 194

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BXY0	MAK16_HUMAN	No assigned EC number	0.4668	0.9271	0.9333	yes	no
Q6P7N1	MAK16_XENTR	No assigned EC number	0.5486	0.7450	0.75	yes	no
Q6NYD4	MAK16_DANRE	No assigned EC number	0.5958	0.6357	0.6336	yes	no
Q1RML7	MAK16_BOVIN	No assigned EC number	0.4735	0.9205	0.9328	yes	no
Q55DJ3	MAK16_DICDI	No assigned EC number	0.5260	0.6357	0.6213	yes	no
Q8BGS0	MAK16_MOUSE	No assigned EC number	0.5824	0.6390	0.6520	yes	no
Q9UTE6	MAK16_SCHPO	No assigned EC number	0.5759	0.6225	0.6225	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015988001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (296 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00020673001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)				•	•				0.728
	GSVIVG00027646001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (526 aa)				•			•		0.680
	GSVIVG00021672001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa)				•					0.671
	GSVIVG00028481001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa)				•					0.671
	GSVIVG00005498001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa)				•					0.668
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)				•					0.666
	GSVIVG00007719001	SubName- Full=Chromosome chr3 scaffold_199, whole genome shotgun sequence; (387 aa)				•					0.666
	GSVIVG00036355001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa)				•	•				0.663
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)				•					0.657
	26N20_60	SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence; (229 aa)				•			•		0.646

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	302
PLN00040	233	PLN00040, PLN00040, Protein MAK16 homolog; Provisi	1e-128
COG5129	303	COG5129, MAK16, Nuclear protein with HMG-like acid	2e-64
pfam01778	114	pfam01778, Ribosomal_L28e, Ribosomal L28e protein	5e-47
pfam04874	97	pfam04874, Mak16, Mak16 protein C-terminal region	2e-14
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	7e-04

>gnl|CDD|215038 PLN00040, PLN00040, Protein MAK16 homolog; Provisional

 Score =  364 bits (935), Expect = e-128
 Identities = 156/205 (76%), Positives = 175/205 (85%)

Query: 1   MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVF 60
           MQHDEVIWQVI HNHCSF AKI+TG FCRN YNVTG+CNRSSCPLANSRYATIR+ DG F
Sbjct: 1   MQHDEVIWQVINHNHCSFKAKIDTGNFCRNKYNVTGLCNRSSCPLANSRYATIREEDGRF 60

Query: 61  YLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRI 120
           YLYMKTIERAH PN+LWE+VKL RNYEKALE IDK+L YWPKFLVHK KQRLTKMTQ  I
Sbjct: 61  YLYMKTIERAHMPNKLWEKVKLSRNYEKALEQIDKHLAYWPKFLVHKNKQRLTKMTQYLI 120

Query: 121 RMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYNY 180
           RMRKLALKTREKI+TTPRK  KRE RRE KA+KAA L+KSIEKELLERLK G YGDIYN+
Sbjct: 121 RMRKLALKTREKIVTTPRKLLKRERRRESKAQKAAQLEKSIEKELLERLKSGTYGDIYNF 180

Query: 181 PADKYNEILDKEQLAADDIEEDEEE 205
           P+  YN++L+ E++   + E  + +
Sbjct: 181 PSKSYNKVLEMEEVEEAEEELPKSD 205

Length = 233

>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region [General function prediction only]

 Score =  204 bits (521), Expect = 2e-64
 Identities = 116/281 (41%), Positives = 170/281 (60%), Gaps = 13/281 (4%)

Query: 2   QHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFY 61
             DE +WQV   N CSF  K E   FCRN YNVTG+C+R SCPLANSRYAT+R  +G  Y
Sbjct: 1   MSDESLWQVSGENFCSFRIKTEEQNFCRNEYNVTGLCDRQSCPLANSRYATVRADNGKLY 60

Query: 62  LYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRIR 121
           LYMKT ERAH P +LWER+KL +NYEKAL+ ID++L++W + ++HK KQRLTK+TQ  ++
Sbjct: 61  LYMKTPERAHVPRKLWERIKLSKNYEKALKQIDESLLFWDEKVIHKCKQRLTKLTQYLLK 120

Query: 122 MRKLALKTREK-IMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGD---- 176
            R+LAL       M    K  +RE  RE KA  AA  +K+IEKEL+ RLK G+YGD    
Sbjct: 121 ARRLALFKEHGEYMVRKPKMNRREKLRERKALNAAKFEKNIEKELMLRLKSGIYGDTPLN 180

Query: 177 ----IYNYPADKYNEILDKEQLAADDIEEDEEEAEIEFVEGYDDLEEEEDIEDFGG---- 228
               ++N  A +  +  D+++   ++ EE + E E    +   +  +++D+E + G    
Sbjct: 181 VREHLWNKAATEREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQS 240

Query: 229 LAVNKSSLDDDDVGLDDNDDDETVAVEHKRVRRESSLALRK 269
           +  ++S  ++      D D+DE    + ++ + + +   RK
Sbjct: 241 METSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKSRK 281

Length = 303

>gnl|CDD|201967 pfam01778, Ribosomal_L28e, Ribosomal L28e protein family

 Score =  153 bits (389), Expect = 5e-47
 Identities = 49/114 (42%), Positives = 71/114 (62%), Gaps = 2/114 (1%)

Query: 6   VIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDH-DGVFYLYM 64
           +IW++IR N+C F+ K     F R PYN+TG+C+R    LANS+Y T+     G   L  
Sbjct: 1   LIWEIIRKNNC-FLVKRNGKTFSREPYNLTGLCSRKYSGLANSKYVTVVPTAKGGVVLVT 59

Query: 65  KTIERAHQPNQLWERVKLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQM 118
           K  +RAH+P +LWE+V L +NY KAL+ I K L Y+   L+ K K+R +K+ + 
Sbjct: 60  KKPKRAHKPAKLWEKVTLSKNYRKALKQIKKALAYYRPDLIKKAKRRASKLLRS 113

Length = 114

>gnl|CDD|218303 pfam04874, Mak16, Mak16 protein C-terminal region

 Score = 67.6 bits (165), Expect = 2e-14
 Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 4/95 (4%)

Query: 136 TPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGD-IYNYPADKYNEILDKEQL 194
             RK ++RE+RREEKA  AA L+K+IEKELLERLK+G YGD  YN     + + L+ E+ 
Sbjct: 1   IKRKVERRESRREEKALVAAKLEKTIEKELLERLKQGTYGDEPYNISQSAFKKALEAEES 60

Query: 195 AADDIEEDEEEAEIEFVEGY---DDLEEEEDIEDF 226
             +D EE+EEE E +  E     DD E EE+IED 
Sbjct: 61  EENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDL 95

The precise function of this eukaryotic protein family is unknown. The yeast orthologues have been implicated in cell cycle progression and biogenesis of 60S ribosomal subunits. The Schistosoma mansoni Mak16 has been shown to target protein transport to the nucleolus. Length = 97

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 24/139 (17%), Positives = 58/139 (41%), Gaps = 1/139 (0%)

Query: 126 ALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDIYNYPADKY 185
           +   ++K  T  +    +   +++  ++     K+ +K  L++     Y    +      
Sbjct: 72  SDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQAD 131

Query: 186 NEILDKEQLAADDIEEDEEEAEIEFVEGYDDLEEEEDIEDFGGLAVNKSSLDDDDVGLDD 245
           ++  D +    DD + D+++ + E  +  DD ++ +D ++    A     L DDD  + D
Sbjct: 132 DDDDDDDDDDLDDDDIDDDDDD-EDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWD 190

Query: 246 NDDDETVAVEHKRVRRESS 264
            DD E +    K  +  ++
Sbjct: 191 EDDSEALRQARKDAKLTAT 209

Length = 509

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
KOG3064	303	consensus RNA-binding nuclear protein (MAK16) cont	100.0
COG5129	303	MAK16 Nuclear protein with HMG-like acidic region	100.0
PLN00040	233	Protein MAK16 homolog; Provisional	100.0
PF01778	117	Ribosomal_L28e: Ribosomal L28e protein family; Int	100.0
PF04874	101	Mak16: Mak16 protein C-terminal region; InterPro:	99.96
PTZ00197	146	60S ribosomal protein L28; Provisional	98.1
KOG3064	303	consensus RNA-binding nuclear protein (MAK16) cont	96.21
KOG3412	133	consensus 60S ribosomal protein L28 [Translation,	94.94
PF04931	784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	90.4
PF05764	240	YL1: YL1 nuclear protein; InterPro: IPR008895 The	89.23

>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]

Probab=100.00  E-value=1.2e-123  Score=860.75  Aligned_cols=289  Identities=55%  Similarity=0.896  Sum_probs=237.5

Q ss_pred             CCCchhHHHhhcCCcceeeeecCCCCCcCCCCCcccccCCCCCCCCCCcceEEEeeCcEEEEEeechhhccCCchhhhhh
Q 022130            1 MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFYLYMKTIERAHQPNQLWERV   80 (302)
Q Consensus         1 M~~D~vIW~iIn~~fCSfK~kt~~~~FCRNeyNvTGlCnR~SCPLANS~YATVre~~G~~yLymKt~ERah~P~klWEki   80 (302)
                      ||||+|||+|||++|||||++|.+++||||+|||||||||+|||||||||||||+++|+||||||||||||||++|||+|
T Consensus         1 Mq~DeviW~vin~~~CS~k~kte~~~fCRNeyNvTGLCnR~SCPLANSrYATVre~~g~~yLymKt~ERaH~P~klwEri   80 (303)
T KOG3064|consen    1 MQSDEVIWQVINKSFCSYKIKTETQTFCRNEYNVTGLCNRSSCPLANSRYATVREENGVLYLYMKTIERAHMPRKLWERI   80 (303)
T ss_pred             CcchHHHHHHhchhhcceeeeccccchhccccccceeeccccCcCccccceeEeecCCEEEEEEechhhhcCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHhhcCCchHHHHHhhhHHHHHHHHHHHHHHHHhhc-CcceeeCchhhhHHHHHHHHHHHHHHhhhh
Q 022130           81 KLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRIRMRKLALKT-REKIMTTPRKEKKREARREEKAEKAAVLDK  159 (302)
Q Consensus        81 kLs~Ny~kALeqId~~L~yWpkflihKcKQRltkltQ~liRmRkl~l~~-~~klv~i~kK~erRe~~RE~KAl~aA~le~  159 (302)
                      +||+||+|||+|||++|.|||+|++||||||||||||||||||+|+++. +.+|||+++|++|||++||+|||+||+|++
T Consensus        81 kLSkNyekALeQIde~Ll~Wp~~~~HKcKQRltklTQylir~rklalr~~q~~~vp~~~K~~rRE~rReeKALvAakldk  160 (303)
T KOG3064|consen   81 KLSKNYEKALEQIDEQLLYWPKYVIHKCKQRLTKLTQYLIRMRKLALRGRQKKLVPIKKKVERREKRREEKALVAAKLDK  160 (303)
T ss_pred             hcchhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999995 457999999999999999999999999999


Q ss_pred             hhHHHHHHHHhcCCCCCccccChHHHHHHHhhhhhccc---cchhhhhhhhhhhhcCCCCcc--hhhhhhhhcccccCCC
Q 022130          160 SIEKELLERLKKGVYGDIYNYPADKYNEILDKEQLAAD---DIEEDEEEAEIEFVEGYDDLE--EEEDIEDFGGLAVNKS  234 (302)
Q Consensus       160 ~IEkELleRLk~G~YGd~yn~~~~~~~k~l~~~~~~~e---~eeeee~~~~~E~v~d~e~~~--e~~d~ed~e~~~~~~~  234 (302)
                      +||+|||.||++|+|||||||++++|+|+|++.+.++.   ++++++++++.|||+|+++.+  +.+|++||.++...+.
T Consensus       161 aIekELm~RLk~G~Ygd~yn~~~~~fnK~l~~~e~d~~de~ee~~~~~~~e~E~v~~D~e~e~~e~~D~E~~~~~~~~~~  240 (303)
T KOG3064|consen  161 AIEKELMERLKSGTYGDIYNFRQHAFNKALEAREEDDKDENEEEEEDEDAELEEVEGDGELEAEETDDSEDWDGDDDSDE  240 (303)
T ss_pred             HHHHHHHHHHhcCCcCCcccchHHHHHHHHHhhhhcccccccccccchhhhhhhccCCcccccccccchhhhcccchhhh
Confidence            99999999999999999999999999999999855432   223556678999998765522  3455555555444332


Q ss_pred             -C-CCCCCCCCCCCCCchhhHHHhhhhhhhhhHHhhhcCCCCCCCCCCcCCCceeEEeeccccccc
Q 022130          235 -S-LDDDDVGLDDNDDDETVAVEHKRVRRESSLALRKLGNDEGGTKPKKKARVLVEVEQEDTDGRQ  298 (302)
Q Consensus       235 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~~~~~kkkr~~vEIEyE~E~e~q  298 (302)
                       + +++++++++++|++++++     .|+.+..  +|  .+.++++++|++|++||||||+|++..
T Consensus       241 ~~~s~~d~d~e~esd~de~Ee-----~K~~~k~--kk--~~~~~k~kkk~~r~~ve~E~E~e~e~~  297 (303)
T KOG3064|consen  241 SDDSDEDSDSEDESDSDEIEE-----NKKESKK--KK--GKKAAKGKKKRPRVHVEIEYEEETEPR  297 (303)
T ss_pred             hhhcccccccccCCchhhHHH-----hhhhhhh--cc--cCCCccccccCCcceEEeehhhccchh
Confidence             2 222222222222222222     1111111  11  123334555578889999999988743

>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]

Probab=100.00  E-value=1.3e-105  Score=733.60  Aligned_cols=285  Identities=42%  Similarity=0.692  Sum_probs=238.5

Q ss_pred             CCchhHHHhhcCCcceeeeecCCCCCcCCCCCcccccCCCCCCCCCCcceEEEeeCcEEEEEeechhhccCCchhhhhhc
Q 022130            2 QHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFYLYMKTIERAHQPNQLWERVK   81 (302)
Q Consensus         2 ~~D~vIW~iIn~~fCSfK~kt~~~~FCRNeyNvTGlCnR~SCPLANS~YATVre~~G~~yLymKt~ERah~P~klWEkik   81 (302)
                      |+|++||||+|++||||+++|..||||||+|||||||+|+|||||||+|||||.++|.||||||||||||+|++||++|+
T Consensus         1 msDE~~Wqv~g~~fCS~rik~e~qnfCRNeyNVTGLC~RqSCPLANSrYATVr~dngkLyLymKtpERaH~P~klwerIk   80 (303)
T COG5129           1 MSDESLWQVSGENFCSFRIKTEEQNFCRNEYNVTGLCDRQSCPLANSRYATVRADNGKLYLYMKTPERAHVPRKLWERIK   80 (303)
T ss_pred             CchhHHHHHccccccceeeecchhhhhhcccccceeeccccCcCccCcceEEEecCCEEEEEecChhhccCcHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHhhcCCchHHHHHhhhHHHHHHHHHHHHHHHHhhcCc-ceeeCchhhhHHHHHHHHHHHHHHhhhhh
Q 022130           82 LPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRIRMRKLALKTRE-KIMTTPRKEKKREARREEKAEKAAVLDKS  160 (302)
Q Consensus        82 Ls~Ny~kALeqId~~L~yWpkflihKcKQRltkltQ~liRmRkl~l~~~~-klv~i~kK~erRe~~RE~KAl~aA~le~~  160 (302)
                      ||+||++||+|||++|.|||+|+|||||||||||||||+..|+|++..++ .+|++++|+.|||+.|++|||+||+||++
T Consensus        81 LSkNY~kAL~QIde~Ll~W~~~~iHkCKQrltkLTQyll~~RRLal~~e~~~y~~~kpK~~rRE~~RerKaL~aak~EKn  160 (303)
T COG5129          81 LSKNYEKALKQIDESLLFWDEKVIHKCKQRLTKLTQYLLKARRLALFKEHGEYMVRKPKMNRREKLRERKALNAAKFEKN  160 (303)
T ss_pred             hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887 69999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCC-ccccChHHHHHHHhhhhhc-cc----cchhhhhhhhhhhhcCCCCcchhhhhhhhcccccCCC
Q 022130          161 IEKELLERLKKGVYGD-IYNYPADKYNEILDKEQLA-AD----DIEEDEEEAEIEFVEGYDDLEEEEDIEDFGGLAVNKS  234 (302)
Q Consensus       161 IEkELleRLk~G~YGd-~yn~~~~~~~k~l~~~~~~-~e----~eeeee~~~~~E~v~d~e~~~e~~d~ed~e~~~~~~~  234 (302)
                      ||+||+.||+||+||| ++|+.++.|+||+.+.+.- ++    ++|+++++++.|||.|+++ .+--+..|+++|.+++.
T Consensus       161 IekELm~RLkSGiYGd~pLnv~e~~wnK~~~~rE~~qde~e~~~eEeE~~d~elE~vtdD~e-~e~~~~~dlekWl~~~~  239 (303)
T COG5129         161 IEKELMLRLKSGIYGDTPLNVREHLWNKAATEREKRQDEKERYVEEEEESDTELEAVTDDSE-KEKTKKKDLEKWLGSDQ  239 (303)
T ss_pred             HHHHHHHHHhccccCCCccchHHHHHHHHHHHHhhccchhhhhhhhhhcccceeEeeccccc-cchhhHHHHHHHhcccc
Confidence            9999999999999998 9999999999999877543 21    2455667889999998765 33457778887777642


Q ss_pred             ----C-CCCCCCCCCCCCCchhhHHHhhhhhhhhhHHhhhcCCCCCCCCCCcCCCceeEEeeccccccccc
Q 022130          235 ----S-LDDDDVGLDDNDDDETVAVEHKRVRRESSLALRKLGNDEGGTKPKKKARVLVEVEQEDTDGRQKA  300 (302)
Q Consensus       235 ----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~~~~~kkkr~~vEIEyE~E~e~q~~  300 (302)
                          + +.+++++++++|+|++++..-+.+++       |      ..-.+|.++|+|+||||+|.+.|.+
T Consensus       240 ~~~ts~se~e~~sesesd~d~dednk~~~rkr-------k------~~~a~ksrkp~i~ieyeqe~e~e~~  297 (303)
T COG5129         240 SMETSESEEEESSESESDEDEDEDNKGKIRKR-------K------TDDAKKSRKPHIHIEYEQERENEKI  297 (303)
T ss_pred             chhccccccccccccccccccccccccchhhc-------c------cCchhhccCCceeeehHhhhhhccc
Confidence                2 22222222222222222211111111       1      1112456679999999999987654

>PLN00040 Protein MAK16 homolog; Provisional

Probab=100.00  E-value=1.3e-93  Score=651.52  Aligned_cols=195  Identities=79%  Similarity=1.257  Sum_probs=192.2

Q ss_pred             CCCchhHHHhhcCCcceeeeecCCCCCcCCCCCcccccCCCCCCCCCCcceEEEeeCcEEEEEeechhhccCCchhhhhh
Q 022130            1 MQHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFYLYMKTIERAHQPNQLWERV   80 (302)
Q Consensus         1 M~~D~vIW~iIn~~fCSfK~kt~~~~FCRNeyNvTGlCnR~SCPLANS~YATVre~~G~~yLymKt~ERah~P~klWEki   80 (302)
                      |+||++||+||+++||||++|+.+++||||+|||||+|||+|||||||+||||+..+|.|||||||+||||+|+++|++|
T Consensus         1 m~SddLiW~IIr~~~csF~vK~~~~~Fcrnp~NltglcsrkycgLANsKyatV~~~~G~v~L~~Kt~erah~Pak~w~kv   80 (233)
T PLN00040          1 MQHDEVIWQVINHNHCSFKAKIDTGNFCRNKYNVTGLCNRSSCPLANSRYATIREEDGRFYLYMKTIERAHMPNKLWEKV   80 (233)
T ss_pred             CCccchhhhhhcCcceeEEEccCCCcccCCCCcccccccccccccccceeeEEEEcCCEEEEEEecccccCCcccceEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHhhcCCchHHHHHhhhHHHHHHHHHHHHHHHHhhcCcceeeCchhhhHHHHHHHHHHHHHHhhhhh
Q 022130           81 KLPRNYEKALEIIDKNLMYWPKFLVHKTKQRLTKMTQMRIRMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKS  160 (302)
Q Consensus        81 kLs~Ny~kALeqId~~L~yWpkflihKcKQRltkltQ~liRmRkl~l~~~~klv~i~kK~erRe~~RE~KAl~aA~le~~  160 (302)
                      .||+||.+||+||+.+|.|||+|++||||||||||||||||||+|+++.++++|||++|++||+++||.||++||+||++
T Consensus        81 ~Lskn~rkalk~I~~~L~~w~~~~ihk~KqRltkl~q~lir~rkl~~~~~~~~~~~~~k~~rre~~re~Ka~~aa~le~~  160 (233)
T PLN00040         81 KLSRNYEKALEQIDKHLAYWPKFLVHKNKQRLTKMTQYLIRMRKLALKTREKIVTTPRKLLKRERRRESKAQKAAQLEKS  160 (233)
T ss_pred             ecCCCHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccceecccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCccccChHHHHHHHhhhhhc
Q 022130          161 IEKELLERLKKGVYGDIYNYPADKYNEILDKEQLA  195 (302)
Q Consensus       161 IEkELleRLk~G~YGd~yn~~~~~~~k~l~~~~~~  195 (302)
                      ||+|||+||++|+||||||||+.+|++||+..+.+
T Consensus       161 Ie~ELl~RL~~G~Yg~~yn~~~~~~~~~l~~~~~~  195 (233)
T PLN00040        161 IEKELLERLKSGTYGDIYNFPSKSYNKVLEMEEVE  195 (233)
T ss_pred             HHHHHHHHHhcCCCCccccCCHHHHHHHHhhhhhh
Confidence            99999999999999999999999999999977653

>PF01778 Ribosomal_L28e: Ribosomal L28e protein family; InterPro: IPR002672 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=3e-34  Score=236.18  Aligned_cols=112  Identities=32%  Similarity=0.526  Sum_probs=94.7

Q ss_pred             hHHHhhcCCcceeeeecC--CCCCcCCCCCcccccCCCCCCCCCCcceEEEee-CcEEEEEeechhhccCCchhhhhhcC
Q 022130            6 VIWQVIRHNHCSFMAKIE--TGKFCRNPYNVTGICNRSSCPLANSRYATIRDH-DGVFYLYMKTIERAHQPNQLWERVKL   82 (302)
Q Consensus         6 vIW~iIn~~fCSfK~kt~--~~~FCRNeyNvTGlCnR~SCPLANS~YATVre~-~G~~yLymKt~ERah~P~klWEkikL   82 (302)
                      +||+||+++|| |.+|+.  +..||+++|||||+|++.+||||||+|+||+.. +|.+||++|+.+++|.|+++|.+|.|
T Consensus         1 L~W~iir~~~~-Fl~K~~~~~~~fs~ep~NL~~~~s~kysgLan~k~v~V~~~~~g~v~l~~K~~~~~~~P~k~~~~~~l   79 (117)
T PF01778_consen    1 LQWEIIRNNNC-FLVKRNGIGKTFSREPGNLTNLNSFKYSGLANSKAVGVRPAPNGGVVLVTKKPKRANKPAKSWEKVTL   79 (117)
T ss_dssp             HHHHHHTTT-T-TEEEET--TEEEE--TT-SSSB-STTT-TTTSS--EECCCEGGGECCCEEE-----TTTT--EEEEEE
T ss_pred             CEEEEecCcce-EEEEeCCCCCcccCCCCcccccccccccccccceeEEEEECCCCcEEEEEccccccCCCcceeEEEec
Confidence            69999999999 999999  899999999999999999999999999999999 99999999999999999999999999


Q ss_pred             CccHHHHHHHHHHhhcC-CchHHHHHhhhHHHHHHHH
Q 022130           83 PRNYEKALEIIDKNLMY-WPKFLVHKTKQRLTKMTQM  118 (302)
Q Consensus        83 s~Ny~kALeqId~~L~y-WpkflihKcKQRltkltQ~  118 (302)
                      ++||.+||++|...+.+ |+..|++.|++|+++|.|+
T Consensus        80 ~k~~r~a~~~I~~~~~~~yr~dL~~~a~~R~s~i~~s  116 (117)
T PF01778_consen   80 SKNSRKALKSIKKQLAKKYRPDLRKAALRRASAILRS  116 (117)
T ss_dssp             SSCHHHHHHHHHHHTSSTHHHHHCCHHHHHHHHHCCH
T ss_pred             CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999 9999999999999999875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L28e forms part of the 60S ribosomal subunit []. This family is found in eukaryotes. In rat there are 9 or 10 copies of the L28 gene. The L28 protein contains a possible internal duplication of 9 residues [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1D_O 4A1B_O 4A18_O 4A19_O 3IZR_b.

>PF04874 Mak16: Mak16 protein C-terminal region; InterPro: IPR006958 The function of these proteins is unknown

Probab=99.96  E-value=2.6e-30  Score=211.11  Aligned_cols=92  Identities=57%  Similarity=0.896  Sum_probs=78.3

Q ss_pred             CchhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCCc-cccChHHHHHHHhhhhhccc--------cchhhhhhh
Q 022130          136 TPRKEKKREARREEKAEKAAVLDKSIEKELLERLKKGVYGDI-YNYPADKYNEILDKEQLAAD--------DIEEDEEEA  206 (302)
Q Consensus       136 i~kK~erRe~~RE~KAl~aA~le~~IEkELleRLk~G~YGd~-yn~~~~~~~k~l~~~~~~~e--------~eeeee~~~  206 (302)
                      |+||++||+++||.||++||+|+++||+|||+||++|||||+ ||||+.+|++||+..+....        +++++++++
T Consensus         1 I~kK~eRRE~~RE~KAl~AA~le~~IEkELLeRLk~G~Ygd~~yN~~~~~~~k~le~~~~~~~~e~e~ee~~eeeeee~~   80 (101)
T PF04874_consen    1 IKKKVERREKRREEKALIAAKLEKSIEKELLERLKSGTYGDIPYNFPEEAFNKVLEEEEKEEEDEDEEEEEEEEEEEEEG   80 (101)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCHHHHHHHHHHHhhcccchhhhhhhhHHHhhccC
Confidence            689999999999999999999999999999999999999998 99999999999998875421        123345678


Q ss_pred             hhhhhcCCCCcchhhhhhhhcc
Q 022130          207 EIEFVEGYDDLEEEEDIEDFGG  228 (302)
Q Consensus       207 ~~E~v~d~e~~~e~~d~ed~e~  228 (302)
                      ++|||+|+++ .+++|++||+|
T Consensus        81 e~E~ved~~e-~ee~d~~D~Ed  101 (101)
T PF04874_consen   81 EVEYVEDDDE-EEEDDIEDIED  101 (101)
T ss_pred             CeeeccCCcc-hhhhhhhhhhC
Confidence            9999998854 44567888764

The yeast orthologues have been implicated in cell cycle progression and biogenesis of 60S ribosomal subunits. The Schistosoma mansoni (Blood fluke) Mak16 has been shown to target protein transport to the nucleolus [].

>PTZ00197 60S ribosomal protein L28; Provisional

Probab=98.10  E-value=1.7e-05  Score=69.44  Aligned_cols=124  Identities=18%  Similarity=0.381  Sum_probs=102.2

Q ss_pred             CCchhHHHhhcCCcceeeeecCCCCCcCCCCCcccccCCCCCCCCCCcceEEEeeCcEEEEEeechhhccCCchhhhhhc
Q 022130            2 QHDEVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFYLYMKTIERAHQPNQLWERVK   81 (302)
Q Consensus         2 ~~D~vIW~iIn~~fCSfK~kt~~~~FCRNeyNvTGlCnR~SCPLANS~YATVre~~G~~yLymKt~ERah~P~klWEkik   81 (302)
                      .|++++|+||.++.| |-+|-.+..|-+-++|++|+=+...+-|||.+=.+|-.++|-+-|-+|..-..|.|++...++.
T Consensus         3 ~S~dL~W~iVRnnns-FLvKr~g~~FSrEP~NL~n~nS~KysGL~n~KaVgV~~~~kgVvv~tKk~k~~~kPak~~~~~t   81 (146)
T PTZ00197          3 HSTDLQWLLVRQNSK-FLQKRNGIRLSSDPFNNNANWTKRHCGFLNTKAAVVKTKGDRILVTTKDGSSNNKPKQMYKKTV   81 (146)
T ss_pred             Cchheeeeeeeccce-eEEccCCCcccCCCCccccccccccccccccceEEEEecCCEEEEEEecCCCCCCCchheeEEe
Confidence            478999999977665 6666667779999999999999999999999999999667778888999999999999999999


Q ss_pred             CCccHHHHHHHHHHhh-cCCchHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 022130           82 LPRNYEKALEIIDKNL-MYWPKFLVHKTKQRLTKMTQMRIRMRKLALKT  129 (302)
Q Consensus        82 Ls~Ny~kALeqId~~L-~yWpkflihKcKQRltkltQ~liRmRkl~l~~  129 (302)
                      |+++.-++.  |-..+ .|=|. |..-|-.|...|.--+.||.|.+.-.
T Consensus        82 lkkg~Rr~~--V~~~v~~YR~D-L~~aAlrRASAIlrs~~~~~~~~~~~  127 (146)
T PTZ00197         82 MAAGVRASV--VSRAVAAVRPD-LASVAFRRARKMACTASRMKKVAAAR  127 (146)
T ss_pred             eccCccHHH--HHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            999988873  43322 25555 77778888888888888888876543

>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]

Probab=96.21  E-value=0.022  Score=54.80  Aligned_cols=30  Identities=27%  Similarity=0.399  Sum_probs=13.1

Q ss_pred             chhhhHHHHHHHHHHHHHHhhhhhhHHHHH
Q 022130          137 PRKEKKREARREEKAEKAAVLDKSIEKELL  166 (302)
Q Consensus       137 ~kK~erRe~~RE~KAl~aA~le~~IEkELl  166 (302)
                      .++-.||+....-.|..--.||+.+=.=|-
T Consensus       142 ~rRE~rReeKALvAakldkaIekELm~RLk  171 (303)
T KOG3064|consen  142 ERREKRREEKALVAAKLDKAIEKELMERLK  171 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444444444444444443333

>KOG3412 consensus 60S ribosomal protein L28 [Translation, ribosomal structure and biogenesis]

Probab=94.94  E-value=0.11  Score=45.30  Aligned_cols=96  Identities=19%  Similarity=0.325  Sum_probs=65.0

Q ss_pred             CCchhHHHhhcCCcceeeeec--CCCCCcCCCCCcccccCCCCCCCCCCcceEEE--eeCcEEEEEeechhhccCCchhh
Q 022130            2 QHDEVIWQVIRHNHCSFMAKI--ETGKFCRNPYNVTGICNRSSCPLANSRYATIR--DHDGVFYLYMKTIERAHQPNQLW   77 (302)
Q Consensus         2 ~~D~vIW~iIn~~fCSfK~kt--~~~~FCRNeyNvTGlCnR~SCPLANS~YATVr--e~~G~~yLymKt~ERah~P~klW   77 (302)
                      .|+.+||+||.++.|-.-.+.  ..+.|-+-+.||.|.-+--.--|+|-+---|.  .+++-+.+-+|-.-+|.-|++..
T Consensus         3 ~S~~L~W~VIRnNn~FL~k~r~~~k~~FstEpnNL~~vnS~rySGL~nkKtvgV~~aA~~kgvvv~~kk~K~aqkPAk~~   82 (133)
T KOG3412|consen    3 TSGHLIWQVIRNNNAFLVKQRGNVKKQFSTEPNNLKNVNSYRYSGLANKKTVGVIPAADKKGVVVVTKKTKGAQKPAKSV   82 (133)
T ss_pred             cccceeeeeeecCCceeeeeccccccccccCCcccccccccccccccccceeeeeecCCCceEEEEEeccccccCchhhh
Confidence            378999999977766553333  25667777777643332222223332222122  12445667788888999999999


Q ss_pred             hhhcCCccHHHHHHHHHHhh
Q 022130           78 ERVKLPRNYEKALEIIDKNL   97 (302)
Q Consensus        78 EkikLs~Ny~kALeqId~~L   97 (302)
                      -+.-|..+.-.-|.-|-..+
T Consensus        83 ~k~~~~k~~r~s~k~la~~i  102 (133)
T KOG3412|consen   83 VKSTLKKEPRRSLKSLANQI  102 (133)
T ss_pred             hHHHHhcccHHHHHHHHHHh
Confidence            99999999999999997766

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar

Probab=90.40  E-value=0.18  Score=53.41  Aligned_cols=19  Identities=11%  Similarity=0.134  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHhhcCc
Q 022130          113 TKMTQMRIRMRKLALKTRE  131 (302)
Q Consensus       113 tkltQ~liRmRkl~l~~~~  131 (302)
                      ....|.|.-+--|++-..+
T Consensus       531 ~~~f~~L~~~~~lq~~~~~  549 (784)
T PF04931_consen  531 AQAFELLLSLVLLQLYNGP  549 (784)
T ss_pred             HHHHHHHHHHHHHHHhcCC
Confidence            4556777777777665433

The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent

>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []

Probab=89.23  E-value=0.45  Score=44.07  Aligned_cols=8  Identities=25%  Similarity=0.227  Sum_probs=4.3

Q ss_pred             hhhhcCCC
Q 022130          208 IEFVEGYD  215 (302)
Q Consensus       208 ~E~v~d~e  215 (302)
                      .+|+++.+
T Consensus        42 ~ef~~~~~   49 (240)
T PF05764_consen   42 EEFESEEE   49 (240)
T ss_pred             ccccCCCc
Confidence            45665543

They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
3iz5_B	261	60S ribosomal protein L2 (L2P); eukaryotic ribosom	7e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 6e-06
 Identities = 42/232 (18%), Positives = 77/232 (33%), Gaps = 61/232 (26%)

Query: 38  CNRSSCPLANSRYATIRDHDGVFYLYMKTIERA--HQPNQLWERVKLPRNYEKALEIIDK 95
            ++ S      + +TI        L +K       H+   + +   +P+ ++    I   
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPY 468

Query: 96  NLMYWPKFLVHKTKQRLTKMTQMRIRMRKLALKTR---EKIMTTPRKEKKREARREEKAE 152
              Y+   + H  K    +  +     R + L  R   +KI            R +  A 
Sbjct: 469 LDQYFYSHIGHHLKN--IEHPERMTLFRMVFLDFRFLEQKI------------RHDSTAW 514

Query: 153 KA--AVLDKSIEKELLERLKKGVYGDIYNYPADKYNEILDKEQLAADDIEEDEEEAEIEF 210
            A  ++L+       L++LK   Y          Y  I D      D   E    A ++F
Sbjct: 515 NASGSILN------TLQQLKF--YK--------PY--ICDN-----DPKYERLVNAILDF 551

Query: 211 VEGYDDLEEEEDIEDFGGLAVNKSSLDDDDVGLDDNDDDETVAVE-HKRVRR 261
           +        EE++       +     D   + L    +DE +  E HK+V+R
Sbjct: 552 LPKI-----EENL-------ICSKYTDLLRIAL--MAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 4e-05
 Identities = 37/305 (12%), Positives = 83/305 (27%), Gaps = 67/305 (21%)

Query: 28  CRNPYNV----TGICNRSSCPLA--NSRYATIRDHDGVFYLYMKTIERAHQPNQLWERVK 81
           C+  + +       CN     L         I  +      +   I+   + + +   ++
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK--LRIHSIQAELR 235

Query: 82  ---LPRNYEKALEIID--KNLMYWPKFLVH-KTKQRLTKMTQMRIRMRKLALKTREKIMT 135
                + YE  L ++   +N   W  F +  K    LT  T    R +++         T
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI--LLT--T----RFKQVTDFLSAATTT 287

Query: 136 TPRKEKKREARREEKAEK--AAVLDKSIEK---ELL-----------ERLKKGV----YG 175
               +        ++ +      LD   +    E+L           E ++ G+      
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 176 DIYNYPADKYNEILDK--EQLAADDIEEDEEEAEIEFVEG----YDDLE------EEEDI 223
              N   DK   I++     L   +  +  +   + F          L        + D+
Sbjct: 348 KHVNC--DKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDV 404

Query: 224 EDFGGLAVNKSSLDDD---------DVGLDDNDDDETVAVEHKRVRRESSLALRKLGNDE 274
                     S ++            + L+     E     H+ +  +     +   +D+
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSDD 463

Query: 275 GGTKP 279
                
Sbjct: 464 LIPPY 468

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
3iz5_b	147	60S ribosomal protein L28 (L28E); eukaryotic ribos	99.94
4a18_O	134	RPL28, ribosomal protein L22; ribosome, eukaryotic	99.77

>4a18_O RPL28, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_O 4a1b_O 4a1d_O

Probab=99.77  E-value=3.3e-19  Score=150.71  Aligned_cols=91  Identities=11%  Similarity=0.308  Sum_probs=85.2

Q ss_pred             hhHHHhhcCCcceeeeecCCCCCcCCCCCcccccCCCCCCCCCCcceEEEee-CcEEEEEeechhhccCCc----hhhhh
Q 022130            5 EVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDH-DGVFYLYMKTIERAHQPN----QLWER   79 (302)
Q Consensus         5 ~vIW~iIn~~fCSfK~kt~~~~FCRNeyNvTGlCnR~SCPLANS~YATVre~-~G~~yLymKt~ERah~P~----klWEk   79 (302)
                      |+||+||.+++| |.+|..++.|||.+|||||+|++.+|+|||+++.+|... +|.  |+||+..++|.|+    ++|.+
T Consensus         3 dL~W~ivrnnns-FLvKr~g~~FS~eP~NL~n~~S~kysGLan~KavgV~~~~~gg--v~~Kk~k~~~kPa~~~~k~~~~   79 (134)
T 4a18_O            3 QLVWEIVKNNNA-FLVKNNGVAFTTDPFSVTGRNTQVGLGFTHRHGVALKGGAKQA--IATSLRKNQSHKVKKTGTIEAE   79 (134)
T ss_dssp             HHHHHHHTTTCT-TEEEETTEEEECCTTCSSSBCSTTTCTTTSSCCEEEEEEGGGE--EEEEEECCCCCCSSCCSCSSEE
T ss_pred             ceeehhhcCcce-EEEeeCCccccCCCCCccceeccccccccccceeEEEEcCCCc--EEEecCcccCCCCccccceeEE
Confidence            799999999999 999999999999999999999999999999999999953 244  9999999999999    99999


Q ss_pred             h-cCCccHHHHHHHHHHhhc
Q 022130           80 V-KLPRNYEKALEIIDKNLM   98 (302)
Q Consensus        80 i-kLs~Ny~kALeqId~~L~   98 (302)
                      + .|++|+-++|.+|...+.
T Consensus        80 ~~~~~k~~Rk~~k~I~~~~~   99 (134)
T 4a18_O           80 TLTVKGGVQRVAKVIRGRFQ   99 (134)
T ss_dssp             EEEESSTHHHHHHHHHHHCC
T ss_pred             EeccccchHHHHHHHHHHHh
Confidence            9 999999999999987664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00