Citrus Sinensis ID: 022133

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRGRYHALVYILELLE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccHHccccccccccccccccccccHHHEHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHEEEEEEEEHHHHHccccccccEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHEEEEEHHHHHcc
Coil and Loop (DISEMBL)
mwgrqreasmmykrtssrdrsstfdveeTTALVQNgteventnpswklsFPHVLVATLSSFLFGYhlgvvneplesisldlgfngntLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVvgtgmglgPTVAALYVTevsppfvrgtyGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCaesphwlykkgrTAEAEAEFEKLLGGSHVKSSLAelskldrgddgdivKFEELLYGRHFRGRYHALVYILELLE
Flexible Loop (DISEMBL)
mwgrqreasmmykrtssrdrsstfdvEETTALvqngteventnpsWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKllggshvksslaelskldrgddgdiVKFEellygrhfrgrYHALVYILELLE
Low Complexity Region (SEG)
MWGRQREASMMYKrtssrdrsstFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRGRYHALVYILELLE
Disordered region (IsUnstruct)
******************************************NPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLL*****************GDDGDIVKFEELLYGRHFRGRYHALVYILEL**
Disordered Region (DISOPRED)
***********************************************LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL********************LYGRHFRGRYHALVYILELLE
Disordered Region (DISEMBL)
**************************EETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRGRYHALVYILELLE
Disordered Region (DISPRO)
*******************************************PSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRGRYHALVYILELLE
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRGRYHALVYILELLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q9FYG3	493	Probable plastidic glucos	yes	no	0.953	0.584	0.712	1e-120
Q2V4B9	495	Probable plastidic glucos	no	no	0.913	0.557	0.684	1e-109
Q0WVE9	524	Probable plastidic glucos	no	no	0.804	0.463	0.426	6e-54
Q56ZZ7	546	Plastidic glucose transpo	no	no	0.903	0.5	0.360	4e-46
Q9ZQP6	580	Probable inositol transpo	no	no	0.741	0.386	0.301	1e-23
P87110	557	Myo-inositol transporter	yes	no	0.877	0.475	0.3	2e-23
C0SPB2	457	Putative metabolite trans	yes	no	0.698	0.461	0.308	7e-23
P49374	551	High-affinity glucose tra	yes	no	0.695	0.381	0.290	2e-22
P46333	461	Probable metabolite trans	no	no	0.682	0.446	0.324	4e-20
Q9C757	580	Probable inositol transpo	no	no	0.728	0.379	0.318	6e-20

>sp|Q9FYG3|PLST2_ARATH Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1

 Score =  432 bits (1111), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/292 (71%), Positives = 242/292 (82%), Gaps = 4/292 (1%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNG--TEVENTNPSWKLSFPHVLVATL 58
           M G QRE S MYKRTSSRD S   DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct: 1   MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query: 59  SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
           SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct: 61  SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query: 119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
           RAFQ+CALPMI+GA +S  + +L  MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query: 179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
           G+FIQIATCLGLM +L IGIPV  I GWWR+CFW+S +PAA+L L M  CAESP WL+K+
Sbjct: 181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query: 239 GRTAEAEAEFEKLLGGSHVKSSLAELSK--LDRGDDGDIVKFEELLYGRHFR 288
           G+ AEAEAEFE+LLGGSHVK+++AEL K  LD+ D+ D+V   ELLYGRH R
Sbjct: 241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSR 292

May be involved in the efflux of glucose towards the cytosol.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2V4B9|PLST3_ARATH Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2

 Score =  394 bits (1013), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/276 (68%), Positives = 222/276 (80%)

Query: 13  KRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNE 72
           KR  S++  S  D  ET   +  GT  +  NPSWK S PHVLVA+L+S LFGYHLGVVNE
Sbjct: 18  KRVPSKEFLSALDKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTSLLFGYHLGVVNE 77

Query: 73  PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132
            LESIS+DLGF+GNT+AEGLVVS CLGGAFIGS  SG +ADGVGRRRAFQL ALPMI+GA
Sbjct: 78  TLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRAFQLSALPMIVGA 137

Query: 133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMG 192
           S+SA+T +L+GMLLGRF+VG GMG+GP+V ALYVTEVSP +VRGTYG+  QIATC+GL+G
Sbjct: 138 SVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLG 197

Query: 193 SLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLL 252
           SL  GIP K+  GWWRICFW+S VPAA+L + M  C ESP WL+K+GR AEAEA FEKLL
Sbjct: 198 SLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGRAAEAEAVFEKLL 257

Query: 253 GGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR 288
           GGS+VK+++AEL K DRGDD D  K  ELL+GR FR
Sbjct: 258 GGSYVKAAMAELVKSDRGDDADSAKLSELLFGRSFR 293

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WVE9|PLST1_ARATH Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2

 Score =  211 bits (536), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 104/244 (42%), Positives = 159/244 (65%), Gaps = 1/244 (0%)

Query: 46  WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGS 105
           W  +FPHV VA++++FLFGYH+GV+N P+ SI+ +LGF GN++ EGLVVS+ + GAFIGS
Sbjct: 76  WLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVSIFIAGAFIGS 135

Query: 106 TLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165
            ++G + D  G RR FQ+  +P+I+GA +SA   +L  +L GRF+VG G+G+   +  +Y
Sbjct: 136 IVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIY 195

Query: 166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225
           ++EV+P   RG+ G   QI TCLG++ SLL+GIP ++   WWR   +V+ +P  +L L M
Sbjct: 196 ISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVASMPGFLLALGM 255

Query: 226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI-VKFEELLYG 284
            F  ESP WL K GR  +A+     + GGS V+ ++ +   + +    ++  ++ ELL  
Sbjct: 256 QFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSGSNLNSRWLELLDK 315

Query: 285 RHFR 288
            H R
Sbjct: 316 PHSR 319

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q56ZZ7|PLST4_ARATH Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2

 Score =  185 bits (469), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 101/280 (36%), Positives = 155/280 (55%), Gaps = 7/280 (2%)

Query: 9   SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
           S +  R+     SS  D EE   L   G              P V VA L + LFGYHLG
Sbjct: 72  SSVKARSVRAQASSDGDEEEAIPLRSEGKSSGTV-------LPFVGVACLGAILFGYHLG 124

Query: 69  VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
           VVN  LE ++ DLG   NT+ +G +VS  L GA +GS   G +AD  GR R FQL A+P+
Sbjct: 125 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRTFQLDAIPL 184

Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
            IGA + AT +++  M++GR + G G+G+   +  LY++E+SP  +RG  G+  Q+  C+
Sbjct: 185 AIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICI 244

Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
           G++ +L+ G+P+     WWR  F V+++P+ +L + M F  ESP WL ++G+ +EAE   
Sbjct: 245 GILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGKVSEAEKAI 304

Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR 288
           + L G   V   + +LS   +G       + +L   R+++
Sbjct: 305 KTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWK 344

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQP6|INT3_ARATH Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 5/229 (2%)

Query: 51  PHVLVATLSS----FLFGYHLGVVNEPLESISLDLG-FNGNTLAEGLVVSMCLGGAFIGS 105
           P+++   LS+     LFGY+ GV+   L  I  + G  +  T  + ++VSM + GA +G+
Sbjct: 24  PYIMRLALSAGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGA 83

Query: 106 TLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165
            + GW  D  GRR +  +  +  ++GA +         ++LGR +VG G+G+    + LY
Sbjct: 84  AIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLY 143

Query: 166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225
           ++E+SP  +RG   +   +    G   S LI +      G WR    VS +PA I    M
Sbjct: 144 ISEMSPARIRGALVSTNGLLITGGQFLSYLINLAFVHTPGTWRWMLGVSAIPAIIQFCLM 203

Query: 226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGD 274
           +   ESP WLY+  R AE+    E++     V++ +A L +  R +  D
Sbjct: 204 LTLPESPRWLYRNDRKAESRDILERIYPAEMVEAEIAALKESVRAETAD 252

Plasma membrane inositol-proton symporter.

Arabidopsis thaliana (taxid: 3702)

>sp|P87110|ITR2_SCHPO Myo-inositol transporter 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=itr2 PE=2 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 140/290 (48%), Gaps = 25/290 (8%)

Query: 18  RDRSSTFDVEETTALVQNGTEVENTNPS-----------WKLSFPHVLVATLSSFLFGYH 66
           R+  S  + EE  A      EV + N             W LS     VA +S  LFGY 
Sbjct: 43  REIPSLPNEEEANATDPQANEVADENGEGFEAEKISSWIWVLS----AVAGISGLLFGYD 98

Query: 67  LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126
            GV++  L  +  DLG   ++  + L+ S     A I +T SGW+AD VGR+R   LCA 
Sbjct: 99  TGVISGALAVLGSDLGHVLSSGQKELITSATSFAALISATTSGWLADWVGRKRLL-LCAD 157

Query: 127 PM-IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIA 185
            + +IG+ I A +RN+  M++GRF+VG G+GL   +  +Y+TE++P  +RG       + 
Sbjct: 158 AIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITELAPARLRGRLVIIYVVF 217

Query: 186 TCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAE 245
              G + +  +    + +   WRI F +   PA    +++ +  ESP +L +     +  
Sbjct: 218 ITGGQLIAYSLNAAFEHVHQGWRIMFGIGAAPALGQLISLFWTPESPRYLLRHNHVEKV- 276

Query: 246 AEFEKLLGGSHVKSSLAELS-KLDRGDDGDIVKFEELLYGRHFRGRYHAL 294
               K+L   H ++  AE++ K+    +G  V F E   G  F+  +H+L
Sbjct: 277 ---YKILSRIHPEAKPAEIAYKVSLIQEGVKVDFPE---GNKFQHFFHSL 320

Transporter for myo-inositol.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1

 Score =  107 bits (268), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 114/214 (53%), Gaps = 3/214 (1%)

Query: 62  LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAF 121
           L+GY  GV++  +  +  +LG N  T  EGLVVS  L GA +GS  +G + D  GR++A 
Sbjct: 19  LYGYDTGVISGAILFMKKELGLNAFT--EGLVVSSLLVGAILGSGAAGKLTDRFGRKKAI 76

Query: 122 QLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF 181
              AL   IG    A   N   M+L R ++G  +G   T+  LY++E++P   RG   + 
Sbjct: 77  MAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGALSSL 136

Query: 182 IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRT 241
            Q+   +G++ S ++     + A  WR    ++ VP+ +L + ++F  ESP WL+  G  
Sbjct: 137 NQLMITVGILLSYIVNYIFAD-AEAWRWMLGLAAVPSLLLLIGILFMPESPRWLFTNGEE 195

Query: 242 AEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI 275
           ++A+   EKL G   +   + ++ + ++ D+G +
Sbjct: 196 SKAKKILEKLRGTKDIDQEIHDIKEAEKQDEGGL 229

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P49374|HGT1_KLULA High-affinity glucose transporter OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=HGT1 PE=3 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 109/220 (49%), Gaps = 10/220 (4%)

Query: 50  FPHV-------LVATLSSFLFGYHLGVVNEPL-ESISLDLGFNGNTLAEGLVVSMCLGGA 101
           FPHV        +A +S  +FG+ +  ++  +   +  D   N ++L  G + +   GG+
Sbjct: 22  FPHVYNIYVIGFIACISGLMFGFDIASMSSMIGTDVYKDYFSNPDSLTYGGITASMAGGS 81

Query: 102 FIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTV 161
           F+GS +S   +D  GR+ +  +CA   IIGA +    ++   +++GR + G G+G G + 
Sbjct: 82  FLGSLISPNFSDAFGRKVSLHICAALWIIGAILQCAAQDQAMLIVGRVISGMGIGFGSSA 141

Query: 162 AALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG--WWRICFWVSIVPAA 219
           A +Y +E+SPP +RGT     Q +  +G+M    IG     I G   +RI + + +VP  
Sbjct: 142 APVYCSEISPPKIRGTISGLFQFSVTVGIMVLFYIGYGCHFIDGAAAFRITWGLQMVPGL 201

Query: 220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKS 259
           IL + + F  ESP WL    R  E       ++    V +
Sbjct: 202 ILMVGVFFIPESPRWLANHDRWEETSLIVANIVANGDVNN 241

High-affinity glucose transporter.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3

 Score = 99.0 bits (245), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 116/216 (53%), Gaps = 10/216 (4%)

Query: 58  LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR 117
           L   L+GY  GV++  L  I+ D+     TL EGLVVSM L GA  GS LSG  +D  GR
Sbjct: 16  LGGLLYGYDTGVISGALLFINNDIPLT--TLTEGLVVSMLLLGAIFGSALSGTCSDRWGR 73

Query: 118 RRAFQLCALPMIIGASISATTRNLIGMLLG-RFVVGTGMGLGPTVAALYVTEVSPPFVRG 176
           R+   + ++  IIGA   A ++  IGML+  R ++G  +G    +  +Y++E++P  +RG
Sbjct: 74  RKVVFVLSIIFIIGALACAFSQT-IGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRG 132

Query: 177 TYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLY 236
           T G    +    G++ + ++          WR    ++ VPA +L + + F  ESP WL 
Sbjct: 133 TLGTMNNLMIVTGILLAYIVNYLFTPFEA-WRWMVGLAAVPAVLLLIGIAFMPESPRWLV 191

Query: 237 KKGRTAEAEAEFEKLLGGSHVKSSL-AELSKLDRGD 271
           K+G    +E E  +++  +H    +  EL+++ +G+
Sbjct: 192 KRG----SEEEARRIMNITHDPKDIEMELAEMKQGE 223

Could serve either a nutritional or an osmotic protection function.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q9C757|INT2_ARATH Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 111/223 (49%), Gaps = 3/223 (1%)

Query: 45  SWKLSFPHVLV--ATLSSFLFGYHLGVVNEPLESISLDL-GFNGNTLAEGLVVSMCLGGA 101
           +WK  +   L   A +   LFGY  GV++  L  I  D    + NT  + ++VSM + GA
Sbjct: 22  TWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGA 81

Query: 102 FIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTV 161
            +G+ + GW  D +GRR A  +     ++GA I A   N   +++GR  VG G+G+    
Sbjct: 82  IVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMT 141

Query: 162 AALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL 221
           A LY++E SP  +RG   +        G   S LI +   ++ G WR    ++ +PA + 
Sbjct: 142 APLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTGTWRWMLGIAGIPALLQ 201

Query: 222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL 264
            + M    ESP WLY+KGR  EA+A   ++     V+  +  L
Sbjct: 202 FVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRAL 244

Plasma membrane inositol-proton symporter. Specific for several inositol epimers, such as myoinositol and scylloinositol. D-chiroinositol, mucoinositol, alloinositol and pinitol are also transported with a lower activity. Not active with galactinol and phytate.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
27261731	489	sugar transporter [Citrus unshiu]	0.953	0.588	1.0	1e-167
255546433	508	sugar transporter, putative [Ricinus com	0.953	0.566	0.774	1e-133
225445194	488	PREDICTED: probable plastidic glucose tr	0.950	0.588	0.781	1e-132
449449521	490	PREDICTED: probable plastidic glucose tr	0.953	0.587	0.763	1e-128
224142161	489	predicted protein [Populus trichocarpa]	0.953	0.588	0.767	1e-127
357500677	490	Sugar transporter [Medicago truncatula]	0.947	0.583	0.756	1e-126
356531285	486	PREDICTED: probable plastidic glucose tr	0.927	0.576	0.764	1e-122
356520521	486	PREDICTED: probable plastidic glucose tr	0.927	0.576	0.767	1e-122
356531287	451	PREDICTED: probable plastidic glucose tr	0.966	0.647	0.739	1e-122
15220399	493	putative plastidic glucose transporter 2	0.953	0.584	0.712	1e-119

>gi|27261731|gb|AAN86062.1| sugar transporter [Citrus unshiu]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 288/288 (100%), Positives = 288/288 (100%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS
Sbjct: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA
Sbjct: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA
Sbjct: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR
Sbjct: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR 288
           TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR
Sbjct: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR 288

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546433|ref|XP_002514276.1| sugar transporter, putative [Ricinus communis] gi|223546732|gb|EEF48230.1| sugar transporter, putative [Ricinus communis]

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 223/288 (77%), Positives = 251/288 (87%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MWGRQRE+  MYKR  SRD +   D+E+ +AL+QN  + E TNPSW LSFPHV+ AT+SS
Sbjct: 14  MWGRQRESKSMYKRMPSRDYTKNSDIEDDSALIQNNMDAEVTNPSWSLSFPHVVAATISS 73

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLESIS+DLGFNGNTLAEGLVVS CLGGAFIGS  SGWIADGVGRRRA
Sbjct: 74  FLFGYHLGVVNEPLESISIDLGFNGNTLAEGLVVSTCLGGAFIGSLFSGWIADGVGRRRA 133

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMIIGAS+SATT  L GML+GRF+VGTGMGLGP VAALYVTEVSP FVRGTYG+
Sbjct: 134 FQLCALPMIIGASVSATTTTLAGMLVGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYGS 193

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLMG+L IGIPV+EI GWWRICFWVS +PA +L LAMVFC ESPHWLYK+GR
Sbjct: 194 FIQIATCLGLMGALFIGIPVREINGWWRICFWVSAIPAGLLALAMVFCVESPHWLYKQGR 253

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR 288
           +AEAE EFE+LLGG+HV+ ++ ELSK+DRGD+ D +   ELLYGRHFR
Sbjct: 254 SAEAEIEFERLLGGAHVRYAIQELSKVDRGDNIDNITLSELLYGRHFR 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445194|ref|XP_002284229.1| PREDICTED: probable plastidic glucose transporter 2 [Vitis vinifera] gi|297738801|emb|CBI28046.3| unnamed protein product [Vitis vinifera] gi|310877904|gb|ADP37183.1| putative monosaccharide transporter [Vitis vinifera]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/288 (78%), Positives = 254/288 (88%), Gaps = 1/288 (0%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MWGRQ EAS+ YKR SSRD +   D+EE++AL QNG   E TNPSWKLS PH++VAT+SS
Sbjct: 1   MWGRQGEASVTYKRVSSRDNTKV-DMEESSALFQNGMGQEITNPSWKLSLPHIIVATISS 59

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLE+I+LDLGF+GNTLAEGLVVS CLGGAFIGS  SGWIADG+GRRRA
Sbjct: 60  FLFGYHLGVVNEPLETIALDLGFSGNTLAEGLVVSTCLGGAFIGSLFSGWIADGIGRRRA 119

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMIIGAS+SATT++L GML+GRF+VGTGMG+GP VA+LYVTEVSP FVRGTYG+
Sbjct: 120 FQLCALPMIIGASVSATTKSLEGMLIGRFLVGTGMGVGPPVASLYVTEVSPAFVRGTYGS 179

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQ+ATCLGLMG+L IGIPVK I GWWRICFW++ VPA IL  AM+FCAESPHWLYKKGR
Sbjct: 180 FIQLATCLGLMGALFIGIPVKAIIGWWRICFWIATVPAGILAFAMMFCAESPHWLYKKGR 239

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR 288
            AEAEAEFEKLLGGSHVK ++A+L K DRGD+ D VK  ELLYGRHFR
Sbjct: 240 IAEAEAEFEKLLGGSHVKFAMADLHKSDRGDETDAVKLSELLYGRHFR 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449521|ref|XP_004142513.1| PREDICTED: probable plastidic glucose transporter 2-like [Cucumis sativus] gi|449522117|ref|XP_004168074.1| PREDICTED: probable plastidic glucose transporter 2-like [Cucumis sativus]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/288 (76%), Positives = 246/288 (85%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MW R+REA   YKR S +D S + D+E+ +A +QNG + E +NPSW LS PHVLVATL+S
Sbjct: 1   MWDRKREAFSTYKRLSLKDNSDSIDMEDNSAHLQNGKDFEASNPSWSLSLPHVLVATLTS 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLE IS DLGFNGNT+AEGLVVS CLGGA IGS LSGWIADGVGRRRA
Sbjct: 61  FLFGYHLGVVNEPLEIISADLGFNGNTMAEGLVVSTCLGGALIGSLLSGWIADGVGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQL ALPMI+GA +SA T+ L GMLLGR  VGTGMGLGP VA+LYVTE+SP FVRGTYG+
Sbjct: 121 FQLSALPMILGAGMSAMTKTLAGMLLGRLFVGTGMGLGPPVASLYVTEISPAFVRGTYGS 180

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLM +LLIGIPVK+IA WWR CFWVS +PAA+L LAMVFCAESPHWLYK+GR
Sbjct: 181 FIQIATCLGLMAALLIGIPVKDIADWWRTCFWVSTIPAALLALAMVFCAESPHWLYKQGR 240

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR 288
           T EAE EFEKLLGGSHVKS+LAELSK DRGD+ D VK  ELL+GRHF+
Sbjct: 241 TEEAETEFEKLLGGSHVKSALAELSKFDRGDEPDDVKLSELLFGRHFQ 288

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142161|ref|XP_002324427.1| predicted protein [Populus trichocarpa] gi|222865861|gb|EEF02992.1| predicted protein [Populus trichocarpa]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/288 (76%), Positives = 247/288 (85%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           M G +     MYKR SSRD +   DVE+ + + Q+  + E TNPSW+LSFPHVL AT+S+
Sbjct: 1   MRGHRTGEYSMYKRMSSRDFTVAADVEDNSVVSQSIPDQEITNPSWRLSFPHVLAATISA 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVS CLGGA IGS  SGWIADG+GRRRA
Sbjct: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSTCLGGALIGSLFSGWIADGIGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMI+GASISATT+ L GMLLGR +VGTGMGLGP V++LYVTEVSP FVRGTYG+
Sbjct: 121 FQLCALPMIVGASISATTKTLAGMLLGRLLVGTGMGLGPPVSSLYVTEVSPSFVRGTYGS 180

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLM +L IGIPV+EIAGWWRICFWVS VPA IL L+M+FCAESPHWLYK+GR
Sbjct: 181 FIQIATCLGLMAALFIGIPVREIAGWWRICFWVSTVPAGILALSMMFCAESPHWLYKQGR 240

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR 288
           TAEAEAEFE+LLGG+HVK ++ ELSKLDRGDD D V F ELLYGR FR
Sbjct: 241 TAEAEAEFERLLGGAHVKFAMQELSKLDRGDDSDDVHFSELLYGRCFR 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500677|ref|XP_003620627.1| Sugar transporter [Medicago truncatula] gi|355495642|gb|AES76845.1| Sugar transporter [Medicago truncatula]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/287 (75%), Positives = 246/287 (85%), Gaps = 1/287 (0%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTF-DVEETTALVQNGTEVENTNPSWKLSFPHVLVATLS 59
           MWG  RE+S++YKRT S+D S+   DVEE   L+ N  + E TNPSWKLS PHVLVAT++
Sbjct: 1   MWGHHRESSIVYKRTPSKDNSNMEEDVEENLDLLDNFIDKETTNPSWKLSLPHVLVATIT 60

Query: 60  SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR 119
           SFLFGYHLGVVNEPLESIS+DLGFNGNTLAEGLVVS+CLGGA  G  LSGWIAD VGRRR
Sbjct: 61  SFLFGYHLGVVNEPLESISVDLGFNGNTLAEGLVVSICLGGALFGCLLSGWIADAVGRRR 120

Query: 120 AFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYG 179
           AFQLCALPMIIGA++SA T NL GML+GR  VGTG+GLGP VAALYVTEVSP FVRGTYG
Sbjct: 121 AFQLCALPMIIGAAMSAATNNLFGMLVGRLFVGTGLGLGPPVAALYVTEVSPAFVRGTYG 180

Query: 180 AFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKG 239
           A IQIATC G++GSL IGIPVKEI+GWWR+CFWVS +PAAIL LAMVFCAESPHWLYK+G
Sbjct: 181 ALIQIATCFGILGSLFIGIPVKEISGWWRVCFWVSTIPAAILALAMVFCAESPHWLYKQG 240

Query: 240 RTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH 286
           RTAEAEAEFE+LLG S  K ++++LSK+DRG+D D VKF ELL+G H
Sbjct: 241 RTAEAEAEFERLLGVSEAKFAMSQLSKVDRGEDTDTVKFSELLHGHH 287

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531285|ref|XP_003534208.1| PREDICTED: probable plastidic glucose transporter 2-like isoform 1 [Glycine max]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/280 (76%), Positives = 240/280 (85%)

Query: 9   SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
           S MYKRT SRD S+  D+EE + L+  G +   +NPS  LS PHVLVAT+SSFLFGYHLG
Sbjct: 6   SSMYKRTPSRDNSNMEDMEENSDLLDIGLDKGTSNPSLMLSLPHVLVATISSFLFGYHLG 65

Query: 69  VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
           VVNEPLESIS+DLGF GNTLAEGLVVS+CLGGA IG  LSGWIADGVGRRRAFQLCALPM
Sbjct: 66  VVNEPLESISVDLGFRGNTLAEGLVVSICLGGALIGCLLSGWIADGVGRRRAFQLCALPM 125

Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
           IIGAS+SA T NL GML+GR  VGTG+GLGP VA+LYVTEVSP FVRGT+GAFIQIATCL
Sbjct: 126 IIGASMSAATNNLFGMLVGRLFVGTGLGLGPPVASLYVTEVSPAFVRGTFGAFIQIATCL 185

Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
           GLMG+L IGIPVKEI+GWWR+CFWVS +PAAIL  AMVFCAESPHWLYK+GRTAEAEAEF
Sbjct: 186 GLMGALFIGIPVKEISGWWRVCFWVSTIPAAILAAAMVFCAESPHWLYKQGRTAEAEAEF 245

Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR 288
           E+LLG S  K +++ELSK+DRGDD D VK  ELL+GRH +
Sbjct: 246 ERLLGVSEAKFAMSELSKVDRGDDTDTVKLSELLHGRHSK 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520521|ref|XP_003528910.1| PREDICTED: probable plastidic glucose transporter 2-like [Glycine max]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/280 (76%), Positives = 239/280 (85%)

Query: 9   SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
           S MYKRT SRD S+  DVEE + L+  G +   +NPS  LS PHVLVAT+SSFLFGYHLG
Sbjct: 6   SSMYKRTPSRDNSNMEDVEENSDLLDIGLDKGTSNPSLMLSLPHVLVATISSFLFGYHLG 65

Query: 69  VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
           VVNEPLESIS+DLGF GNTLAEGLVVS+CLGGA IG  LSGWIADGVGRRRAFQLCALPM
Sbjct: 66  VVNEPLESISVDLGFRGNTLAEGLVVSICLGGALIGCLLSGWIADGVGRRRAFQLCALPM 125

Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
           IIGAS+SA T NL GML+GR  VGTG+GLGP VA+LYVTEVSP FVRGT+GAFIQIATCL
Sbjct: 126 IIGASMSAATNNLFGMLVGRLFVGTGLGLGPPVASLYVTEVSPAFVRGTFGAFIQIATCL 185

Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
           GLMG+L IGIPVKEI+GWWR+CFWVS +PAAIL  AMVFCAESPHWLYK+GRTAEAEAEF
Sbjct: 186 GLMGALFIGIPVKEISGWWRVCFWVSTIPAAILATAMVFCAESPHWLYKQGRTAEAEAEF 245

Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR 288
           E+LLG S  K +++ELSK DRGDD D VK  ELL+GRH +
Sbjct: 246 ERLLGVSEAKFAMSELSKADRGDDSDSVKLSELLHGRHSK 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531287|ref|XP_003534209.1| PREDICTED: probable plastidic glucose transporter 2-like isoform 2 [Glycine max]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/292 (73%), Positives = 244/292 (83%)

Query: 9   SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
           S MYKRT SRD S+  D+EE + L+  G +   +NPS  LS PHVLVAT+SSFLFGYHLG
Sbjct: 6   SSMYKRTPSRDNSNMEDMEENSDLLDIGLDKGTSNPSLMLSLPHVLVATISSFLFGYHLG 65

Query: 69  VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
           VVNEPLESIS+DLGF GNTLAEGLVVS+CLGGA IG  LSGWIADGVGRRRAFQLCALPM
Sbjct: 66  VVNEPLESISVDLGFRGNTLAEGLVVSICLGGALIGCLLSGWIADGVGRRRAFQLCALPM 125

Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
           IIGAS+SA T NL GML+GR  VGTG+GLGP VA+LYVTEVSP FVRGT+GAFIQIATCL
Sbjct: 126 IIGASMSAATNNLFGMLVGRLFVGTGLGLGPPVASLYVTEVSPAFVRGTFGAFIQIATCL 185

Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
           GLMG+L IGIPVKEI+GWWR+CFWVS +PAAIL  AMVFCAESPHWLYK+GRTAEAEAEF
Sbjct: 186 GLMGALFIGIPVKEISGWWRVCFWVSTIPAAILAAAMVFCAESPHWLYKQGRTAEAEAEF 245

Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRGRYHALVYILEL 300
           E+LLG S  K +++ELSK+DRGDD D VK  ELL+GRH +   +  + I  L
Sbjct: 246 ERLLGVSEAKFAMSELSKVDRGDDTDTVKLSELLHGRHSKDIANVCIGIANL 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220399|ref|NP_176898.1| putative plastidic glucose transporter 2 [Arabidopsis thaliana] gi|75334518|sp|Q9FYG3.1|PLST2_ARATH RecName: Full=Probable plastidic glucose transporter 2 gi|9828628|gb|AAG00251.1|AC002130_16 F1N21.12 [Arabidopsis thaliana] gi|110742090|dbj|BAE98976.1| transport protein like protein [Arabidopsis thaliana] gi|332196504|gb|AEE34625.1| putative plastidic glucose transporter 2 [Arabidopsis thaliana]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/292 (71%), Positives = 242/292 (82%), Gaps = 4/292 (1%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNG--TEVENTNPSWKLSFPHVLVATL 58
           M G QRE S MYKRTSSRD S   DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct: 1   MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query: 59  SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
           SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct: 61  SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query: 119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
           RAFQ+CALPMI+GA +S  + +L  MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query: 179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
           G+FIQIATCLGLM +L IGIPV  I GWWR+CFW+S +PAA+L L M  CAESP WL+K+
Sbjct: 181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query: 239 GRTAEAEAEFEKLLGGSHVKSSLAELSK--LDRGDDGDIVKFEELLYGRHFR 288
           G+ AEAEAEFE+LLGGSHVK+++AEL K  LD+ D+ D+V   ELLYGRH R
Sbjct: 241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSR 292

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
TAIR|locus:2019554	494	AT1G67300 [Arabidopsis thalian	0.953	0.582	0.688	9.2e-107
TAIR|locus:2017899	495	SGB1 "SUPPRESSOR OF G PROTEIN	0.874	0.533	0.700	8.2e-99
TAIR|locus:2205548	524	AT1G05030 [Arabidopsis thalian	0.804	0.463	0.426	6.3e-53
TAIR|locus:2181422	546	PGLCT "plastidic GLC transloca	0.788	0.435	0.386	2.1e-45
TIGR_CMR|CBU_0347	463	CBU_0347 "d-xylose-proton symp	0.781	0.509	0.325	7.1e-29
DICTYBASE|DDB_G0278261	630	DDB_G0278261 "solute carrier f	0.781	0.374	0.325	2e-28
TAIR|locus:2058774	580	INT3 "nositol transporter 3" [	0.841	0.437	0.318	1.1e-26
TAIR|locus:2009832	580	INT2 "inositol transporter 2"	0.721	0.375	0.324	1.4e-26
POMBASE|SPAC20G8.03	557	itr2 "MFS myo-inositol transpo	0.817	0.443	0.312	4.1e-25
TAIR|locus:2130689	582	INT4 "inositol transporter 4"	0.791	0.410	0.306	4.7e-25

TAIR|locus:2019554 AT1G67300 [Arabidopsis thaliana (taxid:3702)]

 Score = 1056 (376.8 bits), Expect = 9.2e-107, P = 9.2e-107
 Identities = 201/292 (68%), Positives = 235/292 (80%)

Query:     1 MWGRQREASMMYKXXXXXXXXXXFDVEETTALVQNGT--EVENTNPSWKLSFPHVLVATL 58
             M G QRE S MYK           DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct:     1 MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query:    59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
             SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct:    61 SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query:   119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
             RAFQ+CALPMI+GA +S  + +L  MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct:   121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query:   179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
             G+FIQIATCLGLM +L IGIPV  I GWWR+CFW+S +PAA+L L M  CAESP WL+K+
Sbjct:   181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query:   239 GRTAEAEAEFEKLLGGSHVKSSLAELSKLD--RGDDGDIVKFEELLYGRHFR 288
             G+ AEAEAEFE+LLGGSHVK+++AEL KLD  + D+ D+V   ELLYGRH R
Sbjct:   241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSR 292

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2017899 SGB1 "SUPPRESSOR OF G PROTEIN BETA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
 Identities = 185/264 (70%), Positives = 216/264 (81%)

Query:    25 DVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFN 84
             D  ET   +  GT  +  NPSWK S PHVLVA+L+S LFGYHLGVVNE LESIS+DLGF+
Sbjct:    30 DKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTSLLFGYHLGVVNETLESISIDLGFS 89

Query:    85 GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM 144
             GNT+AEGLVVS CLGGAFIGS  SG +ADGVGRRRAFQL ALPMI+GAS+SA+T +L+GM
Sbjct:    90 GNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRAFQLSALPMIVGASVSASTESLMGM 149

Query:   145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA 204
             LLGRF+VG GMG+GP+V ALYVTEVSP +VRGTYG+  QIATC+GL+GSL  GIP K+  
Sbjct:   150 LLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNL 209

Query:   205 GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL 264
             GWWRICFW+S VPAA+L + M  C ESP WL+K+GR AEAEA FEKLLGGS+VK+++AEL
Sbjct:   210 GWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGRAAEAEAVFEKLLGGSYVKAAMAEL 269

Query:   265 SKLDRGDDGDIVKFEELLYGRHFR 288
              K DRGDD D  K  ELL+GR FR
Sbjct:   270 VKSDRGDDADSAKLSELLFGRSFR 293

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2205548 AT1G05030 [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 104/244 (42%), Positives = 159/244 (65%)

Query:    46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGS 105
             W  +FPHV VA++++FLFGYH+GV+N P+ SI+ +LGF GN++ EGLVVS+ + GAFIGS
Sbjct:    76 WLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVSIFIAGAFIGS 135

Query:   106 TLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165
              ++G + D  G RR FQ+  +P+I+GA +SA   +L  +L GRF+VG G+G+   +  +Y
Sbjct:   136 IVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIY 195

Query:   166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225
             ++EV+P   RG+ G   QI TCLG++ SLL+GIP ++   WWR   +V+ +P  +L L M
Sbjct:   196 ISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVASMPGFLLALGM 255

Query:   226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI-VKFEELLYG 284
              F  ESP WL K GR  +A+     + GGS V+ ++ +   + +    ++  ++ ELL  
Sbjct:   256 QFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSGSNLNSRWLELLDK 315

Query:   285 RHFR 288
              H R
Sbjct:   316 PHSR 319

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2181422 PGLCT "plastidic GLC translocator" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 92/238 (38%), Positives = 144/238 (60%)

Query:    51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGW 110
             P V VA L + LFGYHLGVVN  LE ++ DLG   NT+ +G +VS  L GA +GS   G 
Sbjct:   107 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGA 166

Query:   111 IADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS 170
             +AD  GR R FQL A+P+ IGA + AT +++  M++GR + G G+G+   +  LY++E+S
Sbjct:   167 LADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEIS 226

Query:   171 PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE 230
             P  +RG  G+  Q+  C+G++ +L+ G+P+     WWR  F V+++P+ +L + M F  E
Sbjct:   227 PTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPE 286

Query:   231 SPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR 288
             SP WL ++G+ +EAE   + L G   V   + +LS   +G       + +L   R+++
Sbjct:   287 SPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWK 344

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 79/243 (32%), Positives = 128/243 (52%)

Query:    35 NGTEVENTNPSWKLSFPHVL--VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGL 92
             N T+ +   P+ K  F  V+  +A  +  LFGY  GV++  +  IS +  F+ +    G 
Sbjct:     2 NSTD-QYVLPAKKSHFYWVIAFIAAFAGILFGYDTGVISGAILFISQE--FHLSPQMNGF 58

Query:    93 VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG 152
             VVS  L GAF+G+  SG +AD +GR+R   + AL  I+G +IS+ T ++  +++GR +VG
Sbjct:    59 VVSAVLIGAFLGALFSGHLADYIGRKRLLIIDALIFIVGTAISSMTVSISWLVIGRIIVG 118

Query:   153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212
               +G+    A LY++E+SPP  RG   +  Q+A  +G+  S ++         W R  F 
Sbjct:   119 IAIGIASYSAPLYISEISPPHRRGALVSLNQLAVTIGIFLSYVVDYYFARHDAW-RSMFA 177

Query:   213 VSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSKLDRGD 271
               ++PAA+L L M+    SP W++ +G   +A     KL G G H +  L  +    +  
Sbjct:   178 AGVIPAALLLLGMIVLPYSPRWIFSRGHEEKALWILRKLRGHGPHAEQELEHIRASLQQQ 237

Query:   272 DGD 274
              GD
Sbjct:   238 KGD 240

GO:0015519 "D-xylose:hydrogen symporter activity" evidence=ISS

GO:0015753 "D-xylose transport" evidence=ISS

DICTYBASE|DDB_G0278261 DDB_G0278261 "solute carrier family 2 member protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 324 (119.1 bits), Expect = 2.0e-28, P = 2.0e-28
 Identities = 79/243 (32%), Positives = 124/243 (51%)

Query:    25 DVEETTALVQNGTEVENTNPSWKLSFP---HVLVATLSSFLFGYHLGVVNEPLESISLDL 81
             ++  TT   +N  E  N N + KLSF    +V  + LS+  FGY+ GV++  +  I    
Sbjct:   152 NISTTTITTRNNNENLNNNNNSKLSFFLIFNVSFSVLSTLQFGYNTGVISPTILDIQTIF 211

Query:    82 GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL 141
             G N N   + ++VS  L GA +GS LSG+  D  GR++      L  ++G  + +  +N 
Sbjct:   212 GLNVNE--KSMLVSSVLFGAMLGSFLSGFFVDIFGRKKTLLGNNLFYLLGPLLCSVGKNY 269

Query:   142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK 201
               +L+GR + G G+G+  +V  LY+TE+SPP  RG+ G   Q    LG+M S L    + 
Sbjct:   270 ATLLIGRLITGVGVGIASSVVPLYITEISPPSFRGSLGLLRQSTVTLGIMLSSLFAYGLL 329

Query:   202 EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL 261
               +  WR  F ++ +P+    +   +  ESP WL  K R  EA+   +K+    HV   L
Sbjct:   330 VYSNGWRYTFAIASIPSLFQFILGYWFVESPRWLVSKNREDEAKQIMKKI--EPHVSEDL 387

Query:   262 AEL 264
              +L
Sbjct:   388 IDL 390

GO:0055085 "transmembrane transport" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2058774 INT3 "nositol transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 86/270 (31%), Positives = 136/270 (50%)

Query:    26 VEETTALVQ-NGTEVENTNPSWKLSFPHVLVATLSS----FLFGYHLGVVNEPLESISLD 80
             VEE +   Q N TEV  T  +W+   P+++   LS+     LFGY+ GV+   L  I  +
Sbjct:     2 VEEASKSEQINITEVWTT--TWET--PYIMRLALSAGIGGLLFGYNTGVIAGALLYIKEE 57

Query:    81 LG-FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR 139
              G  +  T  + ++VSM + GA +G+ + GW  D  GRR +  +  +  ++GA +     
Sbjct:    58 FGEVDNKTWLQEIIVSMTVAGAIVGAAIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAH 117

Query:   140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP 199
                 ++LGR +VG G+G+    + LY++E+SP  +RG   +   +    G   S LI + 
Sbjct:   118 APWVIILGRLLVGFGVGMASMTSPLYISEMSPARIRGALVSTNGLLITGGQFLSYLINLA 177

Query:   200 VKEIAGWWRICFWVSIVPAAI-LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVK 258
                  G WR    VS +PA I  CL M+   ESP WLY+  R AE+    E++     V+
Sbjct:   178 FVHTPGTWRWMLGVSAIPAIIQFCL-MLTLPESPRWLYRNDRKAESRDILERIYPAEMVE 236

Query:   259 SSLAELSKLDRGD--DGDIV--KFEELLYG 284
             + +A L +  R +  D DI+   F + L G
Sbjct:   237 AEIAALKESVRAETADEDIIGHTFSDKLRG 266

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 1.4e-26, P = 1.4e-26
 Identities = 73/225 (32%), Positives = 113/225 (50%)

Query:    45 SWKLSFPHVL----VATLSSFLFGYHLGVVNEPLESISLDL-GFNGNTLAEGLVVSMCLG 99
             +WK   P+VL     A +   LFGY  GV++  L  I  D    + NT  + ++VSM + 
Sbjct:    22 TWKN--PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVA 79

Query:   100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159
             GA +G+ + GW  D +GRR A  +     ++GA I A   N   +++GR  VG G+G+  
Sbjct:    80 GAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMAS 139

Query:   160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219
               A LY++E SP  +RG   +        G   S LI +   ++ G WR    ++ +PA 
Sbjct:   140 MTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTGTWRWMLGIAGIPAL 199

Query:   220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL 264
             +  + M    ESP WLY+KGR  EA+A   ++     V+  +  L
Sbjct:   200 LQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRAL 244

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IMP;IDA

GO:0015798 "myo-inositol transport" evidence=IDA

GO:0023052 "signaling" evidence=TAS

GO:0090406 "pollen tube" evidence=TAS

GO:0006863 "purine nucleobase transport" evidence=RCA

POMBASE|SPAC20G8.03 itr2 "MFS myo-inositol transporter" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 292 (107.8 bits), Expect = 4.1e-25, P = 4.1e-25
 Identities = 82/262 (31%), Positives = 133/262 (50%)

Query:    36 GTEVENTNP-SWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV 94
             G E E  +   W LS     VA +S  LFGY  GV++  L  +  DLG   ++  + L+ 
Sbjct:    71 GFEAEKISSWIWVLS----AVAGISGLLFGYDTGVISGALAVLGSDLGHVLSSGQKELIT 126

Query:    95 SMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM-IIGASISATTRNLIGMLLGRFVVGT 153
             S     A I +T SGW+AD VGR+R   LCA  + +IG+ I A +RN+  M++GRF+VG 
Sbjct:   127 SATSFAALISATTSGWLADWVGRKRLL-LCADAIFVIGSVIMAASRNVAMMVVGRFIVGY 185

Query:   154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213
             G+GL   +  +Y+TE++P  +RG       +    G + +  +    + +   WRI F +
Sbjct:   186 GIGLTSLIVPMYITELAPARLRGRLVIIYVVFITGGQLIAYSLNAAFEHVHQGWRIMFGI 245

Query:   214 SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELS-KLDRGDD 272
                PA    +++ +  ESP +L +     +      K+L   H ++  AE++ K+    +
Sbjct:   246 GAAPALGQLISLFWTPESPRYLLRHNHVEKVY----KILSRIHPEAKPAEIAYKVSLIQE 301

Query:   273 GDIVKFEELLYGRHFRGRYHAL 294
             G  V F E   G  F+  +H+L
Sbjct:   302 GVKVDFPE---GNKFQHFFHSL 320

GO:0005365 "myo-inositol transmembrane transporter activity" evidence=ISO;IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0015798 "myo-inositol transport" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0097357 "myo-inositol import into cell" evidence=IMP

TAIR|locus:2130689 INT4 "inositol transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 4.7e-25, P = 4.7e-25
 Identities = 77/251 (30%), Positives = 123/251 (49%)

Query:    45 SWKLSFPHVLVATLSS----FLFGYHLGVVNEPLESISLDLG-FNGNTLAEGLVVSMCLG 99
             +WK   P+++   LS+     LFGY  GV++  L  I  D    +  T  +  +VSM + 
Sbjct:    21 TWKT--PYIMRLALSAGIGGLLFGYDTGVISGALLFIKEDFDEVDKKTWLQSTIVSMAVA 78

Query:   100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159
             GA +G+ + GWI D  GRR +  +  +  +IGA + A       +++GR  VG G+G+  
Sbjct:    79 GAIVGAAVGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMAS 138

Query:   160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219
               + LY++E SP  +RG   +   +    G   S LI +      G WR    V+ VPA 
Sbjct:   139 MTSPLYISEASPARIRGALVSTNGLLITGGQFFSYLINLAFVHTPGTWRWMLGVAGVPAI 198

Query:   220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFE 279
             +  + M+   ESP WLY+K R AE+ A  E++     V+   AE+  L    + +  K +
Sbjct:   199 VQFVLMLSLPESPRWLYRKDRIAESRAILERIYPADEVE---AEMEALKLSVEAE--KAD 253

Query:   280 ELLYGRHFRGR 290
             E + G  F  +
Sbjct:   254 EAIIGDSFSAK 264

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FYG3	PLST2_ARATH	No assigned EC number	0.7123	0.9536	0.5841	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016716001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (488 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	302
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-37
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-29
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	3e-25
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-20
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-13
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	3e-13
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-11
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	3e-10
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	4e-09
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-08
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	3e-08
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	1e-07
COG0477	338	COG0477, ProP, Permeases of the major facilitator	5e-07
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	6e-07
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	3e-06
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	4e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	7e-06
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-04
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	1e-04
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	2e-04
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	3e-04
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	0.001
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	0.001

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  138 bits (350), Expect = 1e-37
 Identities = 78/252 (30%), Positives = 125/252 (49%), Gaps = 14/252 (5%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAE---------GLVVSMCLGGAFI 103
            LVA L  FLFGY  GV+   L  I     F   T            GL+VS+   G  I
Sbjct: 2   ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61

Query: 104 GSTLSGWIADGVGRRRAFQLCALPMIIGA--SISATTRNLIGMLLGRFVVGTGMGLGPTV 161
           GS  +G + D  GR+++  +  +  +IGA     A  ++   +++GR +VG G+G    +
Sbjct: 62  GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121

Query: 162 AALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW--WRICFWVSIVPAA 219
             +Y++E++P  +RG  G+  Q+    G++ + +IG+ + + +    WRI   +  VPA 
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181

Query: 220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE-LSKLDRGDDGDIVKF 278
           +L + ++F  ESP WL  KG+  EA A   KL G S V   + E    L+R  + +   +
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASW 241

Query: 279 EELLYGRHFRGR 290
            EL  G+  R R
Sbjct: 242 LELFRGKTVRQR 253

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  116 bits (293), Expect = 1e-29
 Identities = 65/214 (30%), Positives = 111/214 (51%), Gaps = 13/214 (6%)

Query: 54  LVATLSSFLFGYHLGVVNEPLESISLDLGF---NGNTLAE---GLVVSMCLGGAFIGSTL 107
           L+A +   +FGY  GV+   L   + +  F   N ++ +    GLVVS+ L G FIG+  
Sbjct: 31  LIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALF 90

Query: 108 SGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG---MLLGRFVVGTGMGLGPTVAAL 164
           +GW++D  GR+++  + AL  +IGA +       +    +++GR ++G G+G+   +  +
Sbjct: 91  AGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPM 150

Query: 165 YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW---WRICFWVSIVPAAIL 221
           Y++E++P  +RG   +  Q+A   G++ +   G            WRI   + ++PA +L
Sbjct: 151 YLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKV-SLNNTLGWRIPLGLQLIPAGLL 209

Query: 222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGS 255
            L + F  ESP WL  KGR  EA     +L G S
Sbjct: 210 FLGLFFLPESPRWLVGKGRVEEARKSLARLRGTS 243

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  104 bits (261), Expect = 3e-25
 Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 31/240 (12%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESI------SLDLGFNGNTLAEGLVVSMCLGGAFIGST 106
            LVATL   LFGY   V++  +ES+        +L  +      G  V+  L G  IG  
Sbjct: 14  TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGA 73

Query: 107 LSGWIADGVGRRRAFQLCALPMIIGA-----------SISATTRNLIGML-LGRFVVGTG 154
           L G+ ++  GRR + ++ A+   I A           SI       +    + R + G G
Sbjct: 74  LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133

Query: 155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI-----GIPVKEIAGW--- 206
           +GL   ++ +Y+ E++P  +RG   +F Q A    + G L++      I     A W   
Sbjct: 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI---IFGQLVVYFVNYFIARSGDASWLNT 190

Query: 207 --WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL 264
             WR  F    +PA +  + + F  E+P +L  +G+  +AE    K++G +    +L E+
Sbjct: 191 DGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEI 250

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 88.9 bits (221), Expect = 4e-20
 Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 3/176 (1%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIA 112
           +L+  L  FL G   G+++  L  ++ DLG + +    GL+VS    G  +GS L+G+++
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLS 58

Query: 113 DGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172
           D  GRRR   L  L   +G+ + A   +L  +L+GRF++G G G     AA  + E  PP
Sbjct: 59  DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 173 FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC 228
             RG           LG +   L+G  + E  G WR  F +  +   +L L ++F 
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILAILGLLLALLLLFL 173

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 4/204 (1%)

Query: 37  TEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSM 96
                  P  +  +  ++++ L   + GY L  +     +IS + G +   L  G + S 
Sbjct: 3   QNNIRKQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSA 60

Query: 97  CLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG 156
            L G   G+   G +AD +GRRR      L   +   + A   N+  +L+ RF+ G G+G
Sbjct: 61  GLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLG 120

Query: 157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV-SI 215
                    V+E +P   RGT    +     +G      +   +  + G WR  F+V  I
Sbjct: 121 GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-WRSLFYVGGI 179

Query: 216 VPAAILCLAMVFCAESPHWLYKKG 239
            P  +L L M F  ES  +L  K 
Sbjct: 180 APLLLLLLLMRFLPESIDFLVSKR 203

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 4/147 (2%)

Query: 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159
           G  +GS + G+++D  GR++   L  L   +   ++A + N    L+ R +VG G+G   
Sbjct: 139 GVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIW 198

Query: 160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219
             A +  TE  P   R   G  IQ+   LGL+   L+   + +    WR       +P  
Sbjct: 199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTF 254

Query: 220 ILCLAMVFCAESPHWLYKKGRTAEAEA 246
           +  L   F  ESP WL  +GR  EA  
Sbjct: 255 LFFLLSWFVPESPRWLISQGRIEEALK 281

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 7/176 (3%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIA 112
           + +A   + L    LG        ++ DLG +   +  GL+++    G  +   L+G ++
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLY--LAEDLGISPTEI--GLLLTAFSLGYALAQPLAGRLS 56

Query: 113 DGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172
           D  GRRR   +  L   +G  +     +L  +L+ R + G G G     AA  + +  PP
Sbjct: 57  DRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPP 116

Query: 173 FVRGTYGAFIQIATCLGLM-GSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227
             RG     +     LG   G LL G+        WR  F +  + A +  +    
Sbjct: 117 EERGRALGLLSAGFGLGAALGPLLGGLLAS--LFGWRAAFLILAILALLAAVLAAL 170

Length = 346

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 15/133 (11%)

Query: 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT--TRNLIGM------LLGRFVVGTG 154
           +G+ + G   D +GR++   +  L M IG  +     +   IG+      LL R + G  
Sbjct: 50  LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109

Query: 155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG------W-W 207
           +G     AALY+ E +PP  RG YG+F Q+   +GL+ + L  + +  + G      W W
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169

Query: 208 RICFWVSIVPAAI 220
           RI F VS V   I
Sbjct: 170 RIPFLVSAVLVLI 182

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 56.8 bits (137), Expect = 4e-09
 Identities = 38/156 (24%), Positives = 56/156 (35%), Gaps = 1/156 (0%)

Query: 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVA 162
            G+ + G   D  GRR       +    G          I M + R V+G GMG     +
Sbjct: 62  FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSS 121

Query: 163 ALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRICFWVSIVPAAIL 221
           A YV E  P  +R      +     +G + +  +   V  + G  WR  F++SI+P    
Sbjct: 122 AAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181

Query: 222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHV 257
                   E+  W  K    A      + L GG H 
Sbjct: 182 LWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHR 217

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 6/181 (3%)

Query: 50  FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSG 109
              +L+  L+ FL  +    +   L     ++       A GL++S+   G  +G+ L G
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA-GLLLSLFGLGGILGALLGG 232

Query: 110 WIADGVGRRRAFQLCALP-MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE 168
            ++D +GRRR   L  L    +G  + A   +L  +L+   ++G G+G          +E
Sbjct: 233 LLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASE 292

Query: 169 VSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC 228
           ++PP  RGT          LG     L+   + +  G+      V ++ AA+  LA +  
Sbjct: 293 LAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG----GVFLILAALALLAALLL 348

Query: 229 A 229
            
Sbjct: 349 L 349

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 12/169 (7%)

Query: 98  LGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGL 157
           L GA +G    G +AD +GR+R   +      + +  +A   +   +L+ R +  TG+GL
Sbjct: 64  LPGALLG----GRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL--TGVGL 117

Query: 158 G---PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS 214
           G   P + AL  +E   P +RGT  + +      G   + +IG+     A W R  F+V 
Sbjct: 118 GGALPNLIAL-TSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW-RHIFYVG 175

Query: 215 -IVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLA 262
            + P  ++ L M +  ES  +    G   +       L G     ++L 
Sbjct: 176 GVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLL 224

Length = 406

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 2/129 (1%)

Query: 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159
           G  I S LSG + D  GR+    +     ++  ++ A + N+  +++ RF+ G G     
Sbjct: 10  GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFAL 69

Query: 160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219
              A  + ++ PP  RG     +     LG +    +G  + +  G WR  F    +  A
Sbjct: 70  VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAI-LA 127

Query: 220 ILCLAMVFC 228
           +    ++  
Sbjct: 128 LAAFILLAF 136

Length = 141

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 50.1 bits (118), Expect = 5e-07
 Identities = 49/215 (22%), Positives = 84/215 (39%), Gaps = 5/215 (2%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIA 112
           +L   L++ L G  LG+++  L  +   L  +   L  GL++S    G  IGS L+G + 
Sbjct: 4   LLALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLG 63

Query: 113 DGVGRRRAFQLCALPMIIGASISA--TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS 170
           D  GRR+   +  L  ++G  + A      L  +L+ R + G G G    VA+  ++E  
Sbjct: 64  DRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWF 123

Query: 171 PPFVRGTYGAFIQIATCLGLM---GSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227
           P          +       L    G LL G+ +  +   WR  F ++ +   +L + ++ 
Sbjct: 124 PEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLL 183

Query: 228 CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLA 262
                           A  E  KLL    +     
Sbjct: 184 LDLLLAAPRLPLAVGLALIELGKLLLLLLILLLGG 218

Length = 338

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 16/181 (8%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIA 112
           +L   L++F  G    V    L  I+ DLG +    A G +++    G  +G+ L   + 
Sbjct: 15  LLALALAAFAIGTTEFVPVGLLPPIAADLGVS--EGAAGQLITAYALGVALGAPLLALLT 72

Query: 113 DGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172
             + RRR         I+   +SA   +   +LL R + G   G+  ++AA     + PP
Sbjct: 73  GRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPP 132

Query: 173 FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW------WRICFWVSIVPAAILCLAMV 226
             RG   A   + T  GL  + ++G+P   +  +      WR  F   I   A+L L ++
Sbjct: 133 GKRG--RALALVFT--GLTLATVLGVP---LGTFLGQLFGWRATFLA-IAVLALLALLLL 184

Query: 227 F 227
           +
Sbjct: 185 W 185

Length = 394

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 21/164 (12%)

Query: 85  GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLI 142
           GN     +++ +    A +G+ L  W+A   G++R F L  L   IG  +       +L 
Sbjct: 254 GNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLW 313

Query: 143 GMLLGRFVVGTGMGLGPTVAALYVTEV-----------SPPFVRGTYGAFIQIATCLGLM 191
             L+   + G G+GL   +    + +V                   Y    ++   LG  
Sbjct: 314 LFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALGGA 373

Query: 192 GSLLI--------GIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227
              L+            +  A    I    +++PA +  LA++ 
Sbjct: 374 IVGLLLAFAGYVANATAQSAAALSGIRLLFTLIPAVLALLALLI 417

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 9/165 (5%)

Query: 77  ISLDLGFN---GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133
           I  DLG     G  LA    +    GGA  G      +AD  GR+       +   +G  
Sbjct: 44  IKADLGLTDMEGAFLATAAFIGRPFGGALFGL-----LADKFGRKPLMMWSIVAYSVGTG 98

Query: 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGS 193
           +S     +I + L RF+VG GM      A+ Y  E  P  ++    AF+     +G + +
Sbjct: 99  LSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIA 158

Query: 194 LLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
                   E  G WR  F+V ++P  ++        ES  W   K
Sbjct: 159 AYFMPSFAEAYG-WRAAFFVGLLPVLLVIYIRARAPESKEWEEAK 202

Length = 426

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 5/142 (3%)

Query: 51  PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGW 110
             VL   L+  LFG+    +   L      LG +   L  GL++ +      IG  L G 
Sbjct: 202 DPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLS--ALLAGLLLGLAGLLGAIGRLLLGR 259

Query: 111 IADGVGRRRAFQLCALPMIIGA---SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVT 167
           ++D +GRRR   L  L +I+ A   ++ + T + + +L+   ++G G GL        V+
Sbjct: 260 LSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVS 319

Query: 168 EVSPPFVRGTYGAFIQIATCLG 189
           +++P   RGT       A  LG
Sbjct: 320 DLAPKEERGTASGLYNTAGSLG 341

Length = 346

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 17/157 (10%)

Query: 83  FNGNTLAEGLVVSMCLGGAFIGSTL-SGWIADGVGRRRAFQLCALPMIIGASISATTR-- 139
           F    L++ L+V++ +G      T  + ++ D  GRR    L A  M I   +       
Sbjct: 280 FETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLG 339

Query: 140 --------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM 191
                    +  + +  F+    +G GP V  + V+E+ P  VR      + IAT    +
Sbjct: 340 VAKSKGAGIVAIVFILLFIAFFALGWGP-VPWVIVSELFPLGVR---PKAMAIATAANWL 395

Query: 192 GSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC 228
            + LIG     I G   I  +V +V A +L L ++F 
Sbjct: 396 ANFLIGFLFPIITG--AIGGYVFLVFAGLLVLFILFV 430

Length = 449

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVA 162
           I   L+GW+A   G RR F +      +G+ +     NL  M++ R + G G G    ++
Sbjct: 52  ISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLS 111

Query: 163 ALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC 222
              +  + PP  RG   A   +   +       +G  + E    WR  F +++    I+ 
Sbjct: 112 FSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIFLINVPIGIIVV 170

Query: 223 LAMVF 227
           +   F
Sbjct: 171 VVAFF 175

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 20/212 (9%)

Query: 46  WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGF-NGNTLAEGLVVSMCLGGAFIG 104
           W L F    V  L+    G  + VV   L S   DL   +      GL+V +   G  +G
Sbjct: 166 WALFF----VLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYL---GMMVG 218

Query: 105 STLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAAL 164
           +   G +AD +GR++   +C       A  S+  +     L  R + G G+G    +   
Sbjct: 219 AFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFS 278

Query: 165 YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW------------WRICFW 212
           Y  E      RG + +++ +   +G + +  +   +    GW            WR+   
Sbjct: 279 YFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVI 338

Query: 213 VSIVPAAILCLAMVFCAESPHWLYKKGRTAEA 244
           V   P      A+ F  ESP +  + G+  EA
Sbjct: 339 VCAFPCVFAIGALTFMPESPRFFLENGKHDEA 370

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 83  FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTR 139
           F+       L+     GG FI S  +G +   +G +    L  L   +GA++   +A+++
Sbjct: 43  FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK 102

Query: 140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172
           +    L+  F++ +G+GL  T A  YVT +  P
Sbjct: 103 SYGFFLVALFILASGIGLLETAANPYVTLLGKP 135

Length = 422

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 15/117 (12%)

Query: 100 GAFIGSTLSGWIADGVGRRRAFQL---CALPMIIGASI-------SATTRNLIGMLLGRF 149
           G  +G+ L+GW++D +   R   L       +I+   +       +     +    LG  
Sbjct: 264 GGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFL 323

Query: 150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW 206
           V G  M     +  +  +E++P    GT   F+     LG + + L    + +  GW
Sbjct: 324 VYGPQM-----LIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGW 375

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 36/171 (21%), Positives = 57/171 (33%), Gaps = 10/171 (5%)

Query: 83  FNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD--GVGRRRAFQLCALPMIIGASISATTRN 140
           F  +   +GL++S    G  I     G++A            +    +I      A    
Sbjct: 71  FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG 130

Query: 141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV 200
           +  ++  R + G   G         + + +PP  R            LG    L I   +
Sbjct: 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWL 190

Query: 201 KEIAGWWRICFWV-SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEK 250
            E  G W + F+V  IV  A   L  VF A+ P             ++FEK
Sbjct: 191 CESWGGWPMIFYVFGIVGCAWSLLWFVFPADDP-------SIHPCISKFEK 234

[Transport and binding proteins, Anions]. Length = 465

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.96
KOG0569	485	consensus Permease of the major facilitator superf	99.95
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.95
KOG0254	513	consensus Predicted transporter (major facilitator	99.94
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.92
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.92
TIGR00898	505	2A0119 cation transport protein.	99.92
PRK10642	490	proline/glycine betaine transporter; Provisional	99.92
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.91
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.9
TIGR00891	405	2A0112 putative sialic acid transporter.	99.9
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.9
TIGR00895	398	2A0115 benzoate transport.	99.9
PRK12307	426	putative sialic acid transporter; Provisional	99.9
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.89
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.89
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.88
PRK03545	390	putative arabinose transporter; Provisional	99.88
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.88
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.88
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.88
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.88
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.88
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.87
PRK11663	434	regulatory protein UhpC; Provisional	99.87
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.86
TIGR00893	399	2A0114 d-galactonate transporter.	99.86
PRK03893	496	putative sialic acid transporter; Provisional	99.86
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.85
PLN00028	476	nitrate transmembrane transporter; Provisional	99.85
PRK10091	382	MFS transport protein AraJ; Provisional	99.85
PRK09952	438	shikimate transporter; Provisional	99.85
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.85
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.85
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.85
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.84
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.84
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.84
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.84
PRK10642	490	proline/glycine betaine transporter; Provisional	99.84
PRK15075	434	citrate-proton symporter; Provisional	99.84
PRK09705	393	cynX putative cyanate transporter; Provisional	99.84
TIGR00900	365	2A0121 H+ Antiporter protein.	99.84
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.83
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.83
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.83
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.82
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.82
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.82
PRK10504	471	putative transporter; Provisional	99.82
PRK11043	401	putative transporter; Provisional	99.82
PRK03699	394	putative transporter; Provisional	99.82
KOG2532	466	consensus Permease of the major facilitator superf	99.81
PRK12382	392	putative transporter; Provisional	99.81
KOG2533	495	consensus Permease of the major facilitator superf	99.81
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.81
PRK03633	381	putative MFS family transporter protein; Provision	99.8
PRK10133	438	L-fucose transporter; Provisional	99.8
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.8
KOG2615	451	consensus Permease of the major facilitator superf	99.8
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.8
TIGR00805	633	oat sodium-independent organic anion transporter.	99.8
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.8
PRK05122	399	major facilitator superfamily transporter; Provisi	99.8
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.8
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.8
PRK09874	408	drug efflux system protein MdtG; Provisional	99.79
PRK10054	395	putative transporter; Provisional	99.78
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.78
KOG0569	485	consensus Permease of the major facilitator superf	99.78
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.77
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.77
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.77
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.77
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.77
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.76
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.76
PTZ00207	591	hypothetical protein; Provisional	99.75
PRK10489	417	enterobactin exporter EntS; Provisional	99.75
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.73
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.73
PRK11010	491	ampG muropeptide transporter; Validated	99.7
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.7
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.7
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.69
PRK11902	402	ampG muropeptide transporter; Reviewed	99.69
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.68
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.68
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.68
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.68
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.67
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.67
PRK15011	393	sugar efflux transporter B; Provisional	99.67
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.67
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.66
TIGR00901	356	2A0125 AmpG-related permease.	99.66
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.64
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.64
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.63
PRK05122	399	major facilitator superfamily transporter; Provisi	99.63
PRK15011	393	sugar efflux transporter B; Provisional	99.63
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.62
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.62
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.61
PRK09952	438	shikimate transporter; Provisional	99.61
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.61
PRK09528	420	lacY galactoside permease; Reviewed	99.6
TIGR00898	505	2A0119 cation transport protein.	99.6
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.59
PRK12382	392	putative transporter; Provisional	99.59
PRK09528	420	lacY galactoside permease; Reviewed	99.58
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.58
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.57
PRK09705	393	cynX putative cyanate transporter; Provisional	99.56
TIGR00893	399	2A0114 d-galactonate transporter.	99.55
PRK03699	394	putative transporter; Provisional	99.55
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.54
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.53
PRK09874	408	drug efflux system protein MdtG; Provisional	99.53
PRK10489	417	enterobactin exporter EntS; Provisional	99.52
TIGR00895	398	2A0115 benzoate transport.	99.51
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.51
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.51
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.5
PRK03893	496	putative sialic acid transporter; Provisional	99.49
PRK03633	381	putative MFS family transporter protein; Provision	99.49
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.49
PRK03545	390	putative arabinose transporter; Provisional	99.49
TIGR00891	405	2A0112 putative sialic acid transporter.	99.47
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.47
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.46
KOG0254	513	consensus Predicted transporter (major facilitator	99.46
PRK15075	434	citrate-proton symporter; Provisional	99.45
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.45
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.45
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.44
PRK12307	426	putative sialic acid transporter; Provisional	99.44
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.44
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.42
PLN00028	476	nitrate transmembrane transporter; Provisional	99.42
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.42
PRK11663	434	regulatory protein UhpC; Provisional	99.41
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.41
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.39
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.39
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.39
PRK10504	471	putative transporter; Provisional	99.38
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.38
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.37
TIGR00900	365	2A0121 H+ Antiporter protein.	99.37
PRK11010	491	ampG muropeptide transporter; Validated	99.36
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.35
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.34
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.32
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.31
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.31
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.31
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.3
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.3
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.29
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.29
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.29
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.28
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.26
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.26
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.26
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.26
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.24
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.23
PRK10054	395	putative transporter; Provisional	99.23
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.23
PRK10429	473	melibiose:sodium symporter; Provisional	99.22
PRK09669	444	putative symporter YagG; Provisional	99.22
PRK09848	448	glucuronide transporter; Provisional	99.22
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.21
KOG2563	480	consensus Permease of the major facilitator superf	99.2
TIGR00901	356	2A0125 AmpG-related permease.	99.19
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.19
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.18
PRK10091	382	MFS transport protein AraJ; Provisional	99.18
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.18
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.18
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.17
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.17
PRK11902	402	ampG muropeptide transporter; Reviewed	99.17
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.17
PRK10429	473	melibiose:sodium symporter; Provisional	99.14
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.13
PRK09669	444	putative symporter YagG; Provisional	99.12
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.12
PF13347	428	MFS_2: MFS/sugar transport protein	99.12
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.1
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.08
PRK10133	438	L-fucose transporter; Provisional	99.08
PF13347	428	MFS_2: MFS/sugar transport protein	99.07
COG2211	467	MelB Na+/melibiose symporter and related transport	99.05
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.03
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.02
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.99
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.99
PRK11043	401	putative transporter; Provisional	98.98
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.98
KOG2532	466	consensus Permease of the major facilitator superf	98.97
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.95
COG0477	338	ProP Permeases of the major facilitator superfamil	98.95
PRK11462	460	putative transporter; Provisional	98.95
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.94
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.93
PRK11462	460	putative transporter; Provisional	98.9
KOG3762	618	consensus Predicted transporter [General function	98.9
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.87
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.87
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.86
KOG3626	735	consensus Organic anion transporter [Secondary met	98.84
COG2211	467	MelB Na+/melibiose symporter and related transport	98.83
PRK09848	448	glucuronide transporter; Provisional	98.83
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.81
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.81
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.8
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.78
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.73
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.65
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.61
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.61
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.61
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.54
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.51
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.49
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.48
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.47
KOG2533	495	consensus Permease of the major facilitator superf	98.42
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.41
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.4
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.38
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.35
PF12832	77	MFS_1_like: MFS_1 like family	98.34
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.33
PTZ00207	591	hypothetical protein; Provisional	98.27
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.16
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.07
KOG2615	451	consensus Permease of the major facilitator superf	97.96
KOG0637	498	consensus Sucrose transporter and related proteins	97.93
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.82
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.8
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.61
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.59
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.58
PRK03612	521	spermidine synthase; Provisional	97.52
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.46
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.39
KOG2563	480	consensus Permease of the major facilitator superf	97.32
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.28
COG3202	509	ATP/ADP translocase [Energy production and convers	97.26
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.18
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.17
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.12
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.1
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	96.93
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	96.91
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.72
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.72
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.7
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.64
TIGR00805	633	oat sodium-independent organic anion transporter.	96.59
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.51
KOG1330	493	consensus Sugar transporter/spinster transmembrane	96.34
KOG3762	618	consensus Predicted transporter [General function	96.29
KOG3810	433	consensus Micronutrient transporters (folate trans	96.26
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.2
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	95.17
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.13
KOG3097	390	consensus Predicted membrane protein [Function unk	94.99
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	94.92
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.11
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	92.74
COG4262	508	Predicted spermidine synthase with an N-terminal m	91.78
KOG3880	409	consensus Predicted small molecule transporter inv	89.22
KOG0637	498	consensus Sucrose transporter and related proteins	87.98
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	87.24
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	87.07
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	85.67
KOG3880	409	consensus Predicted small molecule transporter inv	85.19
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	83.81
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	82.34
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	81.24
PRK10263	1355	DNA translocase FtsK; Provisional	80.44
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	80.03

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.96  E-value=4.4e-28  Score=225.32  Aligned_cols=208  Identities=20%  Similarity=0.250  Sum_probs=183.0

Q ss_pred             cchhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 022133           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA  125 (302)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~  125 (302)
                      .+..|..+.++.++.+..+++...++..+|.+..++|++..+.  +++.+++.++.+++++++|+++||+|||++++++.
T Consensus       162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~--g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~l  239 (742)
T TIGR01299       162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGK--GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICL  239 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            3556666677777788888888888889999999999876655  89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC-
Q 022133          126 LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA-  204 (302)
Q Consensus       126 ~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-  204 (302)
                      ++.+++.++++++++++.++++|++.|++.|+..++...+++|++|++.|+..++++..+..+|.++++.++..+.... 
T Consensus       240 il~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G  319 (742)
T TIGR01299       240 SVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG  319 (742)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999888765543221 


Q ss_pred             -----------cchHHHHHHhHHHHHHHHHHhhccCCChHHHHHhCCHHHHHHHHHHHhCCC
Q 022133          205 -----------GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGS  255 (302)
Q Consensus       205 -----------g~w~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~  255 (302)
                                 ..||+.+++.++++++.++..+++||+|+|+..+++.+++.+.++++...+
T Consensus       320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n  381 (742)
T TIGR01299       320 WSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN  381 (742)
T ss_pred             chhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence                       139999999888888888888899999999999999999999998887543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1e-25  Score=197.96  Aligned_cols=240  Identities=30%  Similarity=0.513  Sum_probs=192.7

Q ss_pred             HHHHHHHHHHHHHHhhhhccchhhhhhh--------hhcccCCcc----hhhHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 022133           51 PHVLVATLSSFLFGYHLGVVNEPLESIS--------LDLGFNGNT----LAEGLVVSMCLGGAFIGSTLSGWIADGVGRR  118 (302)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr  118 (302)
                      .....+.++.+..++....+++..+.+.        +.+|...++    ..++.+++++.+|.++|+++.++++||+|||
T Consensus        11 ~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK   90 (485)
T KOG0569|consen   11 LAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRK   90 (485)
T ss_pred             HHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence            3444455555777888777776554333        334533222    2367888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHH
Q 022133          119 RAFQLCALPMIIGASISAT---TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLL  195 (302)
Q Consensus       119 ~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~  195 (302)
                      ..+.++.++..++.+++.+   .+++.+++++|++.|+..|......+.|+.|..|.+.||....+...+..+|.+++..
T Consensus        91 ~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~  170 (485)
T KOG0569|consen   91 NALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQV  170 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHH
Confidence            9999999888887776665   4788999999999999999999999999999999999999999999999999999966


Q ss_pred             Hhh-cccccCcchHHHHHHhHHHHHHHHHHhhccCCChHHHHH-hCCHHHHHHHHHHHhCCCchhHHHHHHHhhc---cC
Q 022133          196 IGI-PVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYK-KGRTAEAEAEFEKLLGGSHVKSSLAELSKLD---RG  270 (302)
Q Consensus       196 ~~~-~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  270 (302)
                      ++. .+......|++.+.+..+++++.++...++||+|+|+.. +++.+||++.++.+++.++++++.++..++.   +.
T Consensus       171 ~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~  250 (485)
T KOG0569|consen  171 LGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEEL  250 (485)
T ss_pred             HccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhcc
Confidence            654 344444449999999999999999999999999999977 8999999999999999987665554443322   22


Q ss_pred             CCCCcccHHHhhcCCchhHH
Q 022133          271 DDGDIVKFEELLYGRHFRGR  290 (302)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~  290 (302)
                      ++.++.++.+++++++.|+-
T Consensus       251 ~~~~~~sl~~~~~~~~lR~~  270 (485)
T KOG0569|consen  251 EKKKQISLRQLLKNPTLRRP  270 (485)
T ss_pred             ccccCCcHHHHhcCcchhHH
Confidence            33467789999999887764

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.95  E-value=9.2e-26  Score=205.26  Aligned_cols=207  Identities=20%  Similarity=0.289  Sum_probs=170.6

Q ss_pred             cchhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhc-c--cCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 022133           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDL-G--FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ  122 (302)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~  122 (302)
                      .+.++..+.++.++.+..+++...++...+.+..++ +  ...+....+++.+...++.+++++++|+++||+|||+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~   90 (502)
T TIGR00887        11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG   90 (502)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            345566777888889999999988888888766542 1  1122333478999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcch------hHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHH
Q 022133          123 LCALPMIIGASISATTRN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI  196 (302)
Q Consensus       123 ~~~~~~~i~~~~~~~~~~------~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~  196 (302)
                      ++.++..++.++++++++      +..++++|++.|++.|+..+....+++|++|+++|++++++.+.+..+|.++++.+
T Consensus        91 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~  170 (502)
T TIGR00887        91 MELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIV  170 (502)
T ss_pred             HHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888887655      67899999999999999999999999999999999999999999999999888887


Q ss_pred             hhcccc-----------------------cCcchHHHHHHhHHHHHHHHHHhhccCCChHHHHHhCCHH-HHHHHHHHHh
Q 022133          197 GIPVKE-----------------------IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTA-EAEAEFEKLL  252 (302)
Q Consensus       197 ~~~~~~-----------------------~~g~w~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~-~~~~~~~~~~  252 (302)
                      +..+..                       ..+ ||+.+.+.++++++.++..+++||+|+|+..+++.+ ++.+.+++..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~  249 (502)
T TIGR00887       171 ALIVLAGFKHSLEAAADEASCTGSCVPAVDYM-WRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVL  249 (502)
T ss_pred             HHHHHHHhccccccccccccccccccchhccc-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHh
Confidence            764421                       123 999999998888888888889999999998877764 4555566554


Q ss_pred             C
Q 022133          253 G  253 (302)
Q Consensus       253 ~  253 (302)
                      +
T Consensus       250 ~  250 (502)
T TIGR00887       250 Q  250 (502)
T ss_pred             c
Confidence            4

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.94  E-value=3.1e-24  Score=195.55  Aligned_cols=248  Identities=29%  Similarity=0.518  Sum_probs=191.6

Q ss_pred             hhHHHHHHHHHHHHHHHhh--hhccchhhhhhhhhcccCC---cc--hhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 022133           48 LSFPHVLVATLSSFLFGYH--LGVVNEPLESISLDLGFNG---NT--LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA  120 (302)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~  120 (302)
                      ..........++.+..+++  .+...+....+.++...+.   +.  ...+++.+...++.++++++.|+++|++|||+.
T Consensus        42 ~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~  121 (513)
T KOG0254|consen   42 FVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKT  121 (513)
T ss_pred             ehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3344455566667777775  4455555555555332211   11  233799999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcc
Q 022133          121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (302)
Q Consensus       121 ~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  200 (302)
                      ++++.++..++.+++++++++..++++|++.|+|.|+...+.+.+++|+.|++.||...+..+....+|.+++..++...
T Consensus       122 l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~  201 (513)
T KOG0254|consen  122 LLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT  201 (513)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999996666655


Q ss_pred             ccc-CcchHHHHHHhHHHHHHHHHHhhccCCChHHHHHhCCHHHHHHHHHHHhC--CCchhHHHHHHHhhccC---CCCC
Q 022133          201 KEI-AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLG--GSHVKSSLAELSKLDRG---DDGD  274 (302)
Q Consensus       201 ~~~-~g~w~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~  274 (302)
                      .+. .+ ||..+.+..+++++..+..+++||+|+|+.++++.+++++.++.+++  +.+.+.+.++.+.+...   ....
T Consensus       202 ~~~~~~-Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (513)
T KOG0254|consen  202 SKVYAG-WRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEG  280 (513)
T ss_pred             ccCCcc-HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccc
Confidence            443 24 99999999999888888888899999999999999999999999998  34444444444421111   1122


Q ss_pred             cccHHHhhcCCchhHHHHHHHH
Q 022133          275 IVKFEELLYGRHFRGRYHALVY  296 (302)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      +..+.++++....++....+..
T Consensus       281 ~~~~~~l~~~~~~~~~~i~~~l  302 (513)
T KOG0254|consen  281 KASWGELFSPKVRKRLIIGLLL  302 (513)
T ss_pred             cccHHHhcCcchHHHHHHHHHH
Confidence            2257788874455555444433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.92  E-value=1.3e-23  Score=190.17  Aligned_cols=204  Identities=28%  Similarity=0.550  Sum_probs=167.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhc--------ccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 022133           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDL--------GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR  119 (302)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~  119 (302)
                      ...+.+++..++.+..+++...+++..+.+.+++        +.+..  ..+++.+++.++.+++++++|+++||+|||+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~   86 (479)
T PRK10077          9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANS--LLGFCVASALIGCIIGGALGGYCSNRFGRRD   86 (479)
T ss_pred             HHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            3455667777888899999999998888888876        44434  4489999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhc------------chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHH
Q 022133          120 AFQLCALPMIIGASISATT------------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATC  187 (302)
Q Consensus       120 ~~~~~~~~~~i~~~~~~~~------------~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~  187 (302)
                      +++++.++.+++.+.+++.            +.+..++++|+++|++.|...+...++++|++|+++|++++++.+.+..
T Consensus        87 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~  166 (479)
T PRK10077         87 SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII  166 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHH
Confidence            9999999988887776652            2256778999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccc--------ccCcchHHHHHHhHHHHHHHHHHhhccCCChHHHHHhCCHHHHHHHHHHHhCC
Q 022133          188 LGLMGSLLIGIPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGG  254 (302)
Q Consensus       188 ~g~~~~~~~~~~~~--------~~~g~w~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~  254 (302)
                      +|.+++++++..+.        +..+ ||+.|++.+++.++..+..+++||+|+++..+++.+++.+..++..+.
T Consensus       167 ~G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~  240 (479)
T PRK10077        167 FGQLVVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGN  240 (479)
T ss_pred             HHHHHHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCC
Confidence            99998887765443        2345 999999988877777777788999999887777777766656555443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.92  E-value=3.8e-23  Score=186.44  Aligned_cols=204  Identities=31%  Similarity=0.649  Sum_probs=167.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccC------CcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 022133           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFN------GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAF  121 (302)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~  121 (302)
                      +.+....++.++.++..++...+.+..+.+..+++.+      .+....+++.+++.++..++++++|+++||+|||+++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~  104 (481)
T TIGR00879        25 KVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSL  104 (481)
T ss_pred             HHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH
Confidence            3344445556666777788888888888888888776      3445569999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhc---chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHh-
Q 022133          122 QLCALPMIIGASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG-  197 (302)
Q Consensus       122 ~~~~~~~~i~~~~~~~~---~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~-  197 (302)
                      +++.++.+++.+++.+.   .+++.+++.|++.|++.+...+....++.|++|+++|++++++++.+..+|.++++.++ 
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~  184 (481)
T TIGR00879       105 LIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGS  184 (481)
T ss_pred             HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999888887553   34558899999999999999999999999999999999999999999999999999998 


Q ss_pred             --hcccccCcchHHHHHHhHHHHHHHHHHhhccCCChHHHHHhCCHHHHHHHHHHHh
Q 022133          198 --IPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLL  252 (302)
Q Consensus       198 --~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~  252 (302)
                        .......+ ||+.|++.++..++.++..+++||+|++...+++.+++.+..++..
T Consensus       185 ~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (481)
T TIGR00879       185 GKVSLNNTLG-WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLR  240 (481)
T ss_pred             HhhcCCCCcc-HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHh
Confidence              66656666 9999999777777777777889999987766666555555444443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00898 2A0119 cation transport protein

Probab=99.92  E-value=8.2e-24  Score=192.82  Aligned_cols=219  Identities=24%  Similarity=0.340  Sum_probs=175.9

Q ss_pred             hhhhhhhhhcccCC-cchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 022133           72 EPLESISLDLGFNG-NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (302)
Q Consensus        72 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~  150 (302)
                      +..+.+.+++|++. +....++..+++.++..++++++|+++||+|||++++++.++.+++.++.+++++++.++++|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            46677888999872 13344899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhccCC
Q 022133          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE  230 (302)
Q Consensus       151 ~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~pe  230 (302)
                      .|++.++..+....++.|++|+++|+.+.++...+..+|.++++.++..+.+    ||+.+++.+++.++..+..+++||
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----wr~~~~~~~i~~~~~~~~~~~~~e  265 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTFLFFLLSWFVPE  265 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999998876643    999999988888877777788999


Q ss_pred             ChHHHHHhCCHHHHHHHHHHHhCCCch--hHHHHHHH-hhccCCCCCcccHHHhhcCCchhHHHHHH
Q 022133          231 SPHWLYKKGRTAEAEAEFEKLLGGSHV--KSSLAELS-KLDRGDDGDIVKFEELLYGRHFRGRYHAL  294 (302)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (302)
                      +|+++..+++.+++.+.+++..+.+..  .++..+.. .++..++..+.++.++++++..+...+.+
T Consensus       266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  332 (505)
T TIGR00898       266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCL  332 (505)
T ss_pred             ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHH
Confidence            999998888888887777665433221  11111111 11111112235788999888877765544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.92  E-value=8.8e-23  Score=185.16  Aligned_cols=184  Identities=18%  Similarity=0.225  Sum_probs=151.9

Q ss_pred             HHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchh--hHH--HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 022133           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLA--EGL--VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (302)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~  126 (302)
                      +.+....++.++.+++...++...|.+.++++.+.++..  .+.  +.++..++..+|++++|+++||+|||+++.++.+
T Consensus        16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~   95 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIV   95 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            345667788899999999999999999888865544321  111  2477788999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcchhHH--------HHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhh
Q 022133          127 PMIIGASISATTRNLIG--------MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI  198 (302)
Q Consensus       127 ~~~i~~~~~~~~~~~~~--------~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~  198 (302)
                      +++++++++++++++..        ++++|+++|++.|+.++....+++|++|+++||+..++...+..+|..+++.+..
T Consensus        96 l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~  175 (490)
T PRK10642         96 IMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVV  175 (490)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999764        7899999999999999999999999999999999999988888888877776554


Q ss_pred             ccc--------ccCcchHHHHHHhHHHHHHHHHHhhccCCChHHH
Q 022133          199 PVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWL  235 (302)
Q Consensus       199 ~~~--------~~~g~w~~~~~~~~~~~~~~~~~~~~~pe~~~~~  235 (302)
                      .+.        ...| ||+.|++.++++++++++..++||+|++.
T Consensus       176 ~~~~~~~~~~~~~~g-WR~~f~i~~~~~l~~~~~~~~~~esp~~~  219 (490)
T PRK10642        176 LISTIVGEANFLDWG-WRIPFFIALPLGIIGLYLRHALEETPAFQ  219 (490)
T ss_pred             HHHHhcCHHHhcCcc-HHHHHHHHHHHHHHHHHHHHcCCCChhHH
Confidence            332        2345 99999998777776666667789998764

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.91  E-value=6.1e-23  Score=182.22  Aligned_cols=182  Identities=17%  Similarity=0.172  Sum_probs=161.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 022133           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (302)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~  128 (302)
                      +|+.+..+.+..+..+++...++...|.+.+++|++.++.  |++.+++.+++++++++.|+++||+|||+++..+.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMF--GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            4556777777888888999999999999999999887766  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccc------
Q 022133          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE------  202 (302)
Q Consensus       129 ~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~------  202 (302)
                      .++.+++++++++..+++.|++.|++.+...+....++.|++|+++|++++++++.+..+|..+++.+++.+.+      
T Consensus        84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  163 (412)
T TIGR02332        84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA  163 (412)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999998888999999999999999999999999999999999887753      


Q ss_pred             cCcchHHHHHHhHHHHHH-HHHHhhccCCChH
Q 022133          203 IAGWWRICFWVSIVPAAI-LCLAMVFCAESPH  233 (302)
Q Consensus       203 ~~g~w~~~~~~~~~~~~~-~~~~~~~~pe~~~  233 (302)
                      ..| ||+.|++.++++++ .++.++++||+|.
T Consensus       164 ~~g-wr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       164 LKG-WQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             ccc-hhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            245 99999997777655 4445567899874

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=5.2e-24  Score=180.24  Aligned_cols=236  Identities=15%  Similarity=0.098  Sum_probs=185.7

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 022133           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (302)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~  126 (302)
                      +.++..+..+.+++...++....++...|.+.++.++|.++.  |++.+++.+.+.++-+++|.++||.+.|..+.++++
T Consensus        25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l--G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi  102 (448)
T COG2271          25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL--GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI  102 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence            344555677788888888888889999999999998887776  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHh--hcccccC
Q 022133          127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG--IPVKEIA  204 (302)
Q Consensus       127 ~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~  204 (302)
                      +.++.+++++++++...+.++.++.|+..|+..|.+...++.|+|+++||+..++.+++.++|+.+.|++.  +.+....
T Consensus       103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~  182 (448)
T COG2271         103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG  182 (448)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888  7777766


Q ss_pred             cchHHHHHHhHHHHHH-HHHHhhccCCChHHHHHhCCHHHHHHHHHHHhCCCchhHHHHHHHhhccC-CCCCcccHHHhh
Q 022133          205 GWWRICFWVSIVPAAI-LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRG-DDGDIVKFEELL  282 (302)
Q Consensus       205 g~w~~~~~~~~~~~~~-~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  282 (302)
                      + ||..|++.++++++ +++.++..+++|..   .+-     ...++.++++.+.+    .++++.+ ....+.-.+.++
T Consensus       183 ~-w~~~f~~pgiiaiival~~~~~~rd~Pqs---~GL-----P~ie~~~~d~~e~~----~~~~~~~~ls~~~i~~~YVL  249 (448)
T COG2271         183 G-WRAAFYFPGIIAIIVALILLFLLRDRPQS---EGL-----PPIEEYRGDPLEIY----EEEKENEGLTAWQIFVKYVL  249 (448)
T ss_pred             c-hhHHHHHHHHHHHHHHHHHHHHhCCCccc---cCC-----CCHHHhhcCchhhh----hhhccCCCccHHHHHHHHHH
Confidence            6 99999998777666 55566667777642   111     12222222221111    0001001 111233455677


Q ss_pred             cCCchhHHHHHHHHH
Q 022133          283 YGRHFRGRYHALVYI  297 (302)
Q Consensus       283 ~~~~~~~~~~~~~~~  297 (302)
                      +||..+.+.++.++.
T Consensus       250 ~Nk~iW~la~a~vfv  264 (448)
T COG2271         250 KNKLIWLLALANVFV  264 (448)
T ss_pred             cChHHHHHHHHHHHH
Confidence            888888777766654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.90  E-value=2.9e-22  Score=171.47  Aligned_cols=179  Identities=23%  Similarity=0.287  Sum_probs=166.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 022133           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (302)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~  127 (302)
                      ..+..++.+.++.|..+....+....+|.+.+|+|.+.+..  |+..++|.++..++.++...+.||+.||++++..+.+
T Consensus        10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~a--G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~l   87 (394)
T COG2814          10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAA--GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL   87 (394)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            34556778888899999999999999999999999988877  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcch
Q 022133          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (302)
Q Consensus       128 ~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w  207 (302)
                      ++++++++++++|+..++++|++.|+..|..+++...+..++.|+++|++++++...+.+++.++|..++.++.+..| |
T Consensus        88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G-W  166 (394)
T COG2814          88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-W  166 (394)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHHhHHHHHHHHHH-hhccC
Q 022133          208 RICFWVSIVPAAILCLA-MVFCA  229 (302)
Q Consensus       208 ~~~~~~~~~~~~~~~~~-~~~~p  229 (302)
                      |..|++.+..+++.++. +..+|
T Consensus       167 R~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         167 RATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999988887776554 45577

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.90  E-value=3.2e-22  Score=176.97  Aligned_cols=186  Identities=22%  Similarity=0.305  Sum_probs=165.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 022133           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (302)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~  127 (302)
                      .+++....+.++.+..+++....++..|.+.+++|.+..+.  +++.+++.++..+++++.|+++||+|||++++.+.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   86 (405)
T TIGR00891         9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDA--ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL   86 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            45566777888888999999999999999999999887766  8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCc-c
Q 022133          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-W  206 (302)
Q Consensus       128 ~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g-~  206 (302)
                      .+++.+++++.++++.+++.|++.|++.+...+....++.|++|+++|+++.++.+.+..+|..+++.+++.+.+..+ .
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~  166 (405)
T TIGR00891        87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG  166 (405)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999888776543 3


Q ss_pred             hHHHHHHhHHHHHHHHHHhhccCCChHHH
Q 022133          207 WRICFWVSIVPAAILCLAMVFCAESPHWL  235 (302)
Q Consensus       207 w~~~~~~~~~~~~~~~~~~~~~pe~~~~~  235 (302)
                      ||+.|++.++..++.++....+||++.+.
T Consensus       167 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  195 (405)
T TIGR00891       167 WRALFFISILPIIFALWLRKNIPEAEDWK  195 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence            99999887777766666667789886543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.90  E-value=4.6e-27  Score=211.22  Aligned_cols=231  Identities=31%  Similarity=0.575  Sum_probs=183.6

Q ss_pred             HHHHHHHHhhhhccchhhhhhh--hhcccCCc-------chhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 022133           57 TLSSFLFGYHLGVVNEPLESIS--LDLGFNGN-------TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (302)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~  127 (302)
                      .++.+..+++...++...+...  ...+.+.+       +...++..+...+|..+|++++|+++||+|||+.++++.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen    6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            4455777787777665554443  22222221       12347889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcc---hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC
Q 022133          128 MIIGASISATTR---NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (302)
Q Consensus       128 ~~i~~~~~~~~~---~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  204 (302)
                      .+++.++.++++   ++..+.++|++.|++.|+..+....++.|..|++.|+...++.+.+..+|.+++..++..+....
T Consensus        86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~  165 (451)
T PF00083_consen   86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS  165 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999   99999999999999999999999999999999999999999999999999998888876653322


Q ss_pred             c--chHHHHHHhHHHHHHHHHHhhccCCChHHHHHhCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCCcccHHHhh
Q 022133          205 G--WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL  282 (302)
Q Consensus       205 g--~w~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (302)
                      +  .||..+++.++++++.++..+++||||+|+..+++.+|+++.++++.+.+..+++.++...+.++.++.+.++.+++
T Consensus       166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  245 (451)
T PF00083_consen  166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLF  245 (451)
T ss_pred             ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence            2  39999999999988888888899999999999999999998888866554444444443333333333336788888


Q ss_pred             cCCch
Q 022133          283 YGRHF  287 (302)
Q Consensus       283 ~~~~~  287 (302)
                      +++..
T Consensus       246 ~~~~~  250 (451)
T PF00083_consen  246 RNKKY  250 (451)
T ss_pred             ccccc
Confidence            87653

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00895 2A0115 benzoate transport

Probab=99.90  E-value=3.2e-22  Score=176.34  Aligned_cols=187  Identities=26%  Similarity=0.365  Sum_probs=159.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 022133           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (302)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~  127 (302)
                      ..++.+....+..+..++......++.|.+.+++|.+..+.  +++.+...++..++.++.|+++||+|||+.++.+.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~   91 (398)
T TIGR00895        14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL   91 (398)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHH--HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence            33445555566666667777777788899999988876655  8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcch
Q 022133          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (302)
Q Consensus       128 ~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w  207 (302)
                      .+++.+++.+.++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+..+ |
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~  170 (398)
T TIGR00895        92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-W  170 (398)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-c
Confidence            999998888899999999999999999999999999999999999999999999999999999999999999888877 8


Q ss_pred             HHHHHHhH-HHHHHHHHHhhccCCChHHHHH
Q 022133          208 RICFWVSI-VPAAILCLAMVFCAESPHWLYK  237 (302)
Q Consensus       208 ~~~~~~~~-~~~~~~~~~~~~~pe~~~~~~~  237 (302)
                      +..+++.+ +..+..++..+++||++++..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (398)
T TIGR00895       171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVS  201 (398)
T ss_pred             eeehhhhhhHHHHHHHHHHHhCCCCChHHHh
Confidence            99888875 4444455566778988765443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.90  E-value=6e-22  Score=176.74  Aligned_cols=182  Identities=23%  Similarity=0.342  Sum_probs=157.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 022133           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (302)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~  127 (302)
                      .+++.+..+.++.+..+++.....+..|.+.+++|.+..+.  +++.+++.++..++++++|+++||+|||++++++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~   92 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEG--AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA   92 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            34445667777778888888888889999999999887665  8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcch
Q 022133          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (302)
Q Consensus       128 ~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w  207 (302)
                      .+++.++++++++++.++++|++.|++.+..++....++.|++|+++|+++.++...+..+|.++++.+.+.+.+..+ |
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~-w  171 (426)
T PRK12307         93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG-W  171 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999888887777 9


Q ss_pred             HHHHHHhHHHHHHHHHHhhccCCCh
Q 022133          208 RICFWVSIVPAAILCLAMVFCAESP  232 (302)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~pe~~  232 (302)
                      |+.|++..+..++.++.....||++
T Consensus       172 ~~~f~i~~~~~~~~~~~~~~~p~~~  196 (426)
T PRK12307        172 RAAFFVGLLPVLLVIYIRARAPESK  196 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCh
Confidence            9999886554444433333456653

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.89  E-value=6.1e-22  Score=181.14  Aligned_cols=206  Identities=25%  Similarity=0.283  Sum_probs=165.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHh
Q 022133           87 TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYV  166 (302)
Q Consensus        87 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~  166 (302)
                      .....+..+++++|..+|++++|+++|++|||++++.+.++.+++.++.++++|++.+++.|++.|++.++...+...++
T Consensus       117 ~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~  196 (521)
T KOG0255|consen  117 STLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLV  196 (521)
T ss_pred             HhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhh
Confidence            33447889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhccCCChHHHHHhCCHHHHHH
Q 022133          167 TEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEA  246 (302)
Q Consensus       167 ~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~  246 (302)
                      .|++++++|+.++.+ ......++.+++..++++..  + ||+.+++..++.++.++.+++.||+|+|+..+++.+++.+
T Consensus       197 ~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~-Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~  272 (521)
T KOG0255|consen  197 AEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--D-WRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIK  272 (521)
T ss_pred             eeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--h-HHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHH
Confidence            999999999999999 66666677777777777666  4 9999999999988887777777899999999999999988


Q ss_pred             HHHHHhCCC----chhHHHHHH--Hh-hccCCCCCcccHHHhhcCCchhHHHHHHHH
Q 022133          247 EFEKLLGGS----HVKSSLAEL--SK-LDRGDDGDIVKFEELLYGRHFRGRYHALVY  296 (302)
Q Consensus       247 ~~~~~~~~~----~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      .+++....+    +.++.....  .+ .+....+....+.++++.++++...+..++
T Consensus       273 ~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~  329 (521)
T KOG0255|consen  273 ILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLF  329 (521)
T ss_pred             HHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHH
Confidence            888875422    111212111  11 111222334668899988865555444433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.89  E-value=4e-21  Score=171.76  Aligned_cols=181  Identities=22%  Similarity=0.190  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHHHHHhhhhccchhhhhhhhhccc---CCcch-hhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 022133           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGF---NGNTL-AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (302)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~  126 (302)
                      ..+....++.++..++...++...|.+.++++.   +..+. ..+.+.+...++..++++++|+++||+|||+++..+.+
T Consensus        22 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~  101 (432)
T PRK10406         22 WAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVC  101 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            345566677888899999988889999998853   22211 12233444555666999999999999999999999999


Q ss_pred             HHHHHHHHHhhcchhH--------HHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhh
Q 022133          127 PMIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI  198 (302)
Q Consensus       127 ~~~i~~~~~~~~~~~~--------~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~  198 (302)
                      +++++++++++++++.        .++++|+++|++.|+.++...++++|++|+++|++..++...+...|.++++.+..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~  181 (432)
T PRK10406        102 MMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVV  181 (432)
T ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888753        58899999999999999999999999999999999999988888888777776654


Q ss_pred             ccc--------ccCcchHHHHHHhHHHHHHHHHHhhccCCCh
Q 022133          199 PVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESP  232 (302)
Q Consensus       199 ~~~--------~~~g~w~~~~~~~~~~~~~~~~~~~~~pe~~  232 (302)
                      .+.        ...| ||+.|++.++++++.++....+||+|
T Consensus       182 ~~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~~~~~~~~~e~~  222 (432)
T PRK10406        182 VLQQTLEDAELREWG-WRIPFALGAVLAVVALWLRRQLDETS  222 (432)
T ss_pred             HHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            432        1345 99999998888777666656677764

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.88  E-value=2.6e-21  Score=171.57  Aligned_cols=187  Identities=22%  Similarity=0.303  Sum_probs=163.6

Q ss_pred             cchhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 022133           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA  125 (302)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~  125 (302)
                      .+++|..+.++.+..+..+++....+...|.+.+++|.+.++.  +++.+...++..+++++.|+++||+|||+++..+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   87 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQM--GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSV   87 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            3466767777888888889998888999999999999876665  89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCc
Q 022133          126 LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (302)
Q Consensus       126 ~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  205 (302)
                      ++..++.+++.+.++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  167 (406)
T PRK11551         88 ALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA  167 (406)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence            99988888888899999999999999999999999999999999999999999999999999999999999988877777


Q ss_pred             chHHHHHHhHHHHHHHH-HHhhccCCChHHH
Q 022133          206 WWRICFWVSIVPAAILC-LAMVFCAESPHWL  235 (302)
Q Consensus       206 ~w~~~~~~~~~~~~~~~-~~~~~~pe~~~~~  235 (302)
                       |+..|++.+++.++.. +..+++||+|++.
T Consensus       168 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  197 (406)
T PRK11551        168 -WRHIFYVGGVGPLLLVPLLMRWLPESRAFA  197 (406)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence             9999988765544443 4455689987654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.88  E-value=1.8e-21  Score=171.72  Aligned_cols=180  Identities=19%  Similarity=0.207  Sum_probs=152.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 022133           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (302)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~  129 (302)
                      |..++.+.++.+..........+.+|.+.+++|.+.++.  ++..+.+.++..+++++.|+++||+|||+++..+.++.+
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   85 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQV--GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFI   85 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            334445555555554554455667889999999887766  899999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHH
Q 022133          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (302)
Q Consensus       130 i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~  209 (302)
                      ++++.++++++++.++++|+++|++.+...+....++.|++|+++|+++++++..+..+|..++|.+++.+.+..+ ||+
T Consensus        86 ~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-w~~  164 (390)
T PRK03545         86 ASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-WRT  164 (390)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-HHH
Confidence            9999999999999999999999999988888899999999999999999999999999999999999999888777 999


Q ss_pred             HHHHhHHHHHHHHH-HhhccCCCh
Q 022133          210 CFWVSIVPAAILCL-AMVFCAESP  232 (302)
Q Consensus       210 ~~~~~~~~~~~~~~-~~~~~pe~~  232 (302)
                      .|++.++.+++..+ ...++||.|
T Consensus       165 ~f~~~~~~~~l~~~~~~~~~~~~~  188 (390)
T PRK03545        165 TFLAIGGGALITLLLLIKLLPLLP  188 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99988776665543 344467653

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.88  E-value=1.1e-21  Score=171.29  Aligned_cols=166  Identities=15%  Similarity=0.081  Sum_probs=135.2

Q ss_pred             hhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 022133           65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM  144 (302)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~  144 (302)
                      .....+++.+|.+.+++|++..+.  |++.+++.+++.+++++.|+++||+|||++++.+......+.......+++..+
T Consensus         5 ~~~~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (368)
T TIGR00903         5 AIWVTFSPVLSLVAEDIDVSKEEL--GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL   82 (368)
T ss_pred             HHHHHHHhhHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            334457788999999999987665  899999999999999999999999999998766555544443333333789999


Q ss_pred             HHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHH-HHH
Q 022133          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI-LCL  223 (302)
Q Consensus       145 ~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~-~~~  223 (302)
                      +++|++.|++.+.. ......++|++|+++|++++++.+.+..+|..+++.+++.+.+..| ||+.|++.++++++ .++
T Consensus        83 ~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~~~~  160 (368)
T TIGR00903        83 LACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAGIIL  160 (368)
T ss_pred             HHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHH
Confidence            99999999999864 4556667999999999999999999999999999999999988878 99999986665554 445


Q ss_pred             HhhccCCChHH
Q 022133          224 AMVFCAESPHW  234 (302)
Q Consensus       224 ~~~~~pe~~~~  234 (302)
                      .++++||+|++
T Consensus       161 ~~~~lp~~p~~  171 (368)
T TIGR00903       161 VLAALPALPFQ  171 (368)
T ss_pred             HHHHcCCCCCC
Confidence            56678998753

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.88  E-value=2.4e-21  Score=176.00  Aligned_cols=181  Identities=13%  Similarity=0.105  Sum_probs=160.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 022133           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (302)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~  128 (302)
                      .+..+..++++.++...+...++..+|.+.+++|.+.++.  +|+.+++.++..++.+++|+++||+|||++++++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~--~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~   81 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNEL--LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLF   81 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3556777888899999999999999999999999877766  79999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcC-CCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcch
Q 022133          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (302)
Q Consensus       129 ~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w  207 (302)
                      ++++++++++++++.++++|+++|++.+...+.....+.+.+ |+++|+++++++.....+|..+||.+++.+.+..+ |
T Consensus        82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g-w  160 (495)
T PRK14995         82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY-W  160 (495)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-h
Confidence            999999999999999999999999999988887777777766 67999999999999999999999999999999888 9


Q ss_pred             HHHHHHhHHHHHHHH-HHhhccCCCh
Q 022133          208 RICFWVSIVPAAILC-LAMVFCAESP  232 (302)
Q Consensus       208 ~~~~~~~~~~~~~~~-~~~~~~pe~~  232 (302)
                      |+.|++....+++.+ +..+++|+++
T Consensus       161 r~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        161 GSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999998766655544 3445577754

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.88  E-value=4.9e-21  Score=159.02  Aligned_cols=204  Identities=21%  Similarity=0.247  Sum_probs=176.6

Q ss_pred             cchhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 022133           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA  125 (302)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~  125 (302)
                      -|.++.......++.....+.....+...|......|.+..+.  .++....+.|..+++..+|.++|++|||+.+..+.
T Consensus        73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~--~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~  150 (528)
T KOG0253|consen   73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQA--PLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTF  150 (528)
T ss_pred             ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhh--hHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhH
Confidence            3555666666667766666555556666777777777655544  79999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCc
Q 022133          126 LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (302)
Q Consensus       126 ~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  205 (302)
                      ...++...+.+.++|+..++++|.+.|+|.|+ .|...++-.|..|..+|+..+-+. ..+.+|.++...++..+..+.|
T Consensus       151 l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g  228 (528)
T KOG0253|consen  151 LVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG  228 (528)
T ss_pred             HHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999 788889999999999999887777 8899999999999998888888


Q ss_pred             chHHHHHHhHHHHHHHHHHhhccCCChHHHHHhCCHHHHHHHHHHHhCC
Q 022133          206 WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGG  254 (302)
Q Consensus       206 ~w~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~  254 (302)
                       |||.......+..+..+..+++||+|+++..++++.++.+.++++.+.
T Consensus       229 -wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArm  276 (528)
T KOG0253|consen  229 -WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARM  276 (528)
T ss_pred             -HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHh
Confidence             999998888888888889999999999999999999998888877643

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.88  E-value=5.1e-21  Score=168.94  Aligned_cols=183  Identities=17%  Similarity=0.178  Sum_probs=155.0

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 022133           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (302)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~  126 (302)
                      |+.|..+..+.+..+..........+.+|.+.+++|++.++.  ++..+++.++..+++++.|+++||+|||++++.+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~   93 (394)
T PRK10213         16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVA--GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAV   93 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHH
Confidence            345555555555555555555455567888999999887766  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcc
Q 022133          127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW  206 (302)
Q Consensus       127 ~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~  206 (302)
                      +.+++.++++++++++.+++.|++.|++.+...+....++.|++|+++|+++.++...+.++|..++|.+++.+.+..+ 
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-  172 (394)
T PRK10213         94 LLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-  172 (394)
T ss_pred             HHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-
Confidence            9999999988999999999999999999999999999999999999999999999999999999999999999988888 


Q ss_pred             hHHHHHHhHHHHHHHHHHh-hccCCCh
Q 022133          207 WRICFWVSIVPAAILCLAM-VFCAESP  232 (302)
Q Consensus       207 w~~~~~~~~~~~~~~~~~~-~~~pe~~  232 (302)
                      ||+.|++.++.+++..+.. ...||+|
T Consensus       173 w~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        173 WRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            9999998766665544333 3467764

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.88  E-value=4.5e-21  Score=170.27  Aligned_cols=176  Identities=19%  Similarity=0.222  Sum_probs=152.0

Q ss_pred             HHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 022133           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (302)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~  134 (302)
                      ...+..++.........+.+|.+.+++|.+.+..  ++..+++.++++++++++|+++||+|||++++.+.++.+++.++
T Consensus        20 ~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~   97 (413)
T PRK15403         20 ALILYDFAAYLTTDLIQPGIINVVRDFNADVSLA--PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAA   97 (413)
T ss_pred             HHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHH
Confidence            3344555566667778888999999999876665  78999999999999999999999999999999999999999999


Q ss_pred             HhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHh
Q 022133          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (302)
Q Consensus       135 ~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~  214 (302)
                      ++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..++|.+++.+.+..+ ||+.|++.
T Consensus        98 ~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~~~  176 (413)
T PRK15403         98 TLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFAII  176 (413)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence            99999999999999999999887677778889999999999999999999999999999999998887777 99999988


Q ss_pred             HHHHHHHHHH-hhccCCChH
Q 022133          215 IVPAAILCLA-MVFCAESPH  233 (302)
Q Consensus       215 ~~~~~~~~~~-~~~~pe~~~  233 (302)
                      ++..++.++. ++++||+++
T Consensus       177 ~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        177 AVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHHhCCCCcc
Confidence            7776666554 456888743

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.87  E-value=5.1e-23  Score=175.89  Aligned_cols=187  Identities=21%  Similarity=0.259  Sum_probs=171.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 022133           44 PSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL  123 (302)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~  123 (302)
                      ..++..+..+.++++..++...+.+.+....+.....+|++++..  |++.+.+.+++.+++|+.|+++||+.||+++.+
T Consensus        26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~--Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~v  103 (493)
T KOG1330|consen   26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSEL--GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAV  103 (493)
T ss_pred             cccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhc--cchhHHHHHHHHHHHHHHHHHHhhcCcceEEee
Confidence            345556667888899999999999999889999999999998877  899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccccc
Q 022133          124 CALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (302)
Q Consensus       124 ~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~  203 (302)
                      |..++.++.+..+++..+++++++|.+.|+|.+.+.++.+.+++|.||...|++++++++.+..+|..+|.+++..+.+.
T Consensus       104 G~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~  183 (493)
T KOG1330|consen  104 GIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL  183 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CcchHHHHHHhHHHHHHHHHH-hhccCCCh
Q 022133          204 AGWWRICFWVSIVPAAILCLA-MVFCAESP  232 (302)
Q Consensus       204 ~g~w~~~~~~~~~~~~~~~~~-~~~~pe~~  232 (302)
                      .++||+.|+..++++++..++ .++++|++
T Consensus       184 ~~~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  184 TFWWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             ccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence            888999999988887775554 45667764

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.87  E-value=4.4e-21  Score=171.58  Aligned_cols=179  Identities=18%  Similarity=0.161  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 022133           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (302)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~  131 (302)
                      ......+..+...++...++..+|.+.+++|++..+.  |++.+.+.++..+++++.|+++||+|||+++.++.++.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~  101 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDI--GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGII  101 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHH
Confidence            3444555666666666677888999999999886665  89999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHH
Q 022133          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (302)
Q Consensus       132 ~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~  211 (302)
                      .++++++++++.+++.|++.|++.|...+....++.|++|+++|++++++++.+..+|..+++.+++.+.+..+ ||+.|
T Consensus       102 ~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~f  180 (434)
T PRK11663        102 NILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG-WRYGM  180 (434)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-HHHHH
Confidence            99999999999999999999999998888999999999999999999999999999999999999999888777 99999


Q ss_pred             HHhHHHHHHH-HHHhhccCCChH
Q 022133          212 WVSIVPAAIL-CLAMVFCAESPH  233 (302)
Q Consensus       212 ~~~~~~~~~~-~~~~~~~pe~~~  233 (302)
                      ++.+++.++. ++..+++||+|.
T Consensus       181 ~~~~i~~~~~~~~~~~~~~~~p~  203 (434)
T PRK11663        181 MIAGIIAIVVGLFLCWRLRDKPQ  203 (434)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHh
Confidence            8877665543 444556788764

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.86  E-value=7.7e-21  Score=171.54  Aligned_cols=182  Identities=14%  Similarity=0.153  Sum_probs=147.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccchhhhhhhh----------------------hcccCCcchhhHHHHHHHHHHHHHHH
Q 022133           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISL----------------------DLGFNGNTLAEGLVVSMCLGGAFIGS  105 (302)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~i~~  105 (302)
                      .++....++.++......+....+...+.+.+                      +++++..+.  |++.+++.+++.+++
T Consensus        16 ~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~~~   93 (465)
T TIGR00894        16 FRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQ--GLILSSHFYGQIIIQ   93 (465)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHh--hHHHHHHHHHHHHHH
Confidence            34445555555566666666666666655544                      555555444  899999999999999


Q ss_pred             HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHH
Q 022133          106 TLSGWIADGVGRRRAFQLCALPMIIGASISATT--RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ  183 (302)
Q Consensus       106 ~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~  183 (302)
                      ++.|+++||+|||+++..+.++.+++.+++.++  .++..+++.|+++|++.+...+....+++|++|+++|++++++..
T Consensus        94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  173 (465)
T TIGR00894        94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST  173 (465)
T ss_pred             cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999999999999999999988888776543  567788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccccC-cchHHHHHHhHHHHHHHHHHhhc-cCCCh
Q 022133          184 IATCLGLMGSLLIGIPVKEIA-GWWRICFWVSIVPAAILCLAMVF-CAESP  232 (302)
Q Consensus       184 ~~~~~g~~~~~~~~~~~~~~~-g~w~~~~~~~~~~~~~~~~~~~~-~pe~~  232 (302)
                      .+..+|.++++.+++.+.+.. + ||+.|++.++.+++..+.+++ .+|+|
T Consensus       174 ~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~p  223 (465)
T TIGR00894       174 SGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADDP  223 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHHhcCCc
Confidence            999999999999999988774 6 999999987777766555544 55655

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.86  E-value=4.6e-21  Score=168.56  Aligned_cols=168  Identities=18%  Similarity=0.187  Sum_probs=147.7

Q ss_pred             HHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchh
Q 022133           62 LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL  141 (302)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~  141 (302)
                      +...+...++...|.+.+++|.+..+.  +++.+++.++..++.++.|+++||+|||+++..+.++.+++..++++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~   82 (399)
T TIGR00893         5 INYLDRANLSFAAPMLQEDLGLSAAQY--GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY   82 (399)
T ss_pred             HHHHHHHhhhHhHHHHHHhhCCChhhH--HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH
Confidence            344555667778888999999887766  899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHH
Q 022133          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (302)
Q Consensus       142 ~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~  221 (302)
                      +.++++|++.|++.+...+....++.|++|+++|++++++.+....+|.++++.+++.+.+..+ ||+.|++.++..++.
T Consensus        83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~  161 (399)
T TIGR00893        83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLGIIW  161 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998888777 999998877666654


Q ss_pred             HHH-hhccCCCh
Q 022133          222 CLA-MVFCAESP  232 (302)
Q Consensus       222 ~~~-~~~~pe~~  232 (302)
                      .+. .++.||+|
T Consensus       162 ~~~~~~~~~~~~  173 (399)
T TIGR00893       162 GVLWLKFIPDPP  173 (399)
T ss_pred             HHHhhheecCCC
Confidence            443 44566654

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.86  E-value=2.5e-20  Score=169.58  Aligned_cols=184  Identities=21%  Similarity=0.336  Sum_probs=161.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 022133           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (302)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~  127 (302)
                      .+++.+..+.++.++..++.....+..|.+.+++|.+..+.  +++.+.+.++..+++++.|+++||+|||++++++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQA--ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            44556667777888888888888888999999999887665  8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcch
Q 022133          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (302)
Q Consensus       128 ~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w  207 (302)
                      .+++.+++++.++++.+++.|++.|++.+..++....++.|.+|+++|+++.++...+..+|..+++.+++.+.+..+ |
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w  173 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG-W  173 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999888777 9


Q ss_pred             HHHHHHhHHHHHHHHHHhhccCCChHH
Q 022133          208 RICFWVSIVPAAILCLAMVFCAESPHW  234 (302)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~pe~~~~  234 (302)
                      |+.|++.++..++.++.....||++++
T Consensus       174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~  200 (496)
T PRK03893        174 RALFFIGILPIIFALWLRKNLPEAEDW  200 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence            999988666555555555567877554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.85  E-value=2.7e-20  Score=163.69  Aligned_cols=177  Identities=19%  Similarity=0.207  Sum_probs=152.5

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~  132 (302)
                      +..+.+..+..........+..|.+.+++|.+.++.  +++.+++.++..+++++.|+++||+|||+.+..+.++.+++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   84 (385)
T TIGR00710         7 ALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIV--QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSS   84 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHH
Confidence            344444455556677778888999999999877665  899999999999999999999999999999999999999999


Q ss_pred             HHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Q 022133          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (302)
Q Consensus       133 ~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~  212 (302)
                      +.+...++++.+++.|++.|++.+...+....++.|++|+++|+++.++.+....+|..+++.+++.+.+..+ |+..++
T Consensus        85 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~~  163 (385)
T TIGR00710        85 LGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIFA  163 (385)
T ss_pred             HHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998888777 999988


Q ss_pred             HhHHHHHHHHH-HhhccCCCh
Q 022133          213 VSIVPAAILCL-AMVFCAESP  232 (302)
Q Consensus       213 ~~~~~~~~~~~-~~~~~pe~~  232 (302)
                      +.++..++..+ ..++.||++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~  184 (385)
T TIGR00710       164 FLSLAGILLSALIFFILPETL  184 (385)
T ss_pred             HHHHHHHHHHHHHHHhCCCCC
Confidence            87666555443 445567764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.85  E-value=1.3e-19  Score=163.65  Aligned_cols=177  Identities=15%  Similarity=0.132  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 022133           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (302)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~  129 (302)
                      ++.+.......+...+......+..|.+.+++|++.++.  +++.+.+.+++.+++++.|+++||+|||+++..+.++.+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~  112 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDI--GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA  112 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            344445555555555556667788899999999877665  788889999999999999999999999999999999999


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccc----c---
Q 022133          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK----E---  202 (302)
Q Consensus       130 i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~----~---  202 (302)
                      ++.+++++++++..++++|++.|++.+... ....+++|++|+++||+++++.+....+|..+++.+.+.+.    +   
T Consensus       113 ~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~  191 (476)
T PLN00028        113 PAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGA  191 (476)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999888899999999999999999887654 45567899999999999999988776677666655554332    1   


Q ss_pred             --cCcchHHHHHHhHHHHHHHHHHhhccCC
Q 022133          203 --IAGWWRICFWVSIVPAAILCLAMVFCAE  230 (302)
Q Consensus       203 --~~g~w~~~~~~~~~~~~~~~~~~~~~pe  230 (302)
                        ..| ||+.|++.+++.++..+..+++++
T Consensus       192 ~~~~g-Wr~~f~i~g~l~l~~~l~~~~~~~  220 (476)
T PLN00028        192 PSFTA-WRIAFFVPGLLHIIMGILVLTLGQ  220 (476)
T ss_pred             cchhh-hHHHHHHHHHHHHHHHHHHHHHcC
Confidence              134 999999887777665555444443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.85  E-value=3.8e-20  Score=162.84  Aligned_cols=177  Identities=15%  Similarity=0.200  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~  132 (302)
                      +....+..+..+.......+.+|.+.+++|.+.++.  ++..+++.++..++++++|+++||+|||+++..+.++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   82 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAA--GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN   82 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHH--hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence            455666777777787788889999999999887765  899999999999999999999999999999999999999999


Q ss_pred             HHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Q 022133          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (302)
Q Consensus       133 ~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~  212 (302)
                      ++++++++++.+++.|++.|++.+...+....++.|++|+++|+++++++..+..+|..++|.+++.+.+..+ ||+.|+
T Consensus        83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~f~  161 (382)
T PRK10091         83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYTFL  161 (382)
T ss_pred             HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHHHH
Confidence            9999999999999999999999998888888899999999999999999999999999999999998888777 999999


Q ss_pred             HhHHHHHHHHH-HhhccCCCh
Q 022133          213 VSIVPAAILCL-AMVFCAESP  232 (302)
Q Consensus       213 ~~~~~~~~~~~-~~~~~pe~~  232 (302)
                      +.++..++..+ ..+++||.+
T Consensus       162 ~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        162 LIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHHHHHHHHHHhCCCCC
Confidence            87766555443 445678763

>PRK09952 shikimate transporter; Provisional

Probab=99.85  E-value=9.2e-20  Score=163.17  Aligned_cols=183  Identities=20%  Similarity=0.164  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhccchhhhh-hhhhc--ccCCcchhhHHHH-----HHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 022133           50 FPHVLVATLSSFLFGYHLGVVNEPLES-ISLDL--GFNGNTLAEGLVV-----SMCLGGAFIGSTLSGWIADGVGRRRAF  121 (302)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~-----~~~~~~~~i~~~~~g~l~d~~Grr~~~  121 (302)
                      ++......++.+..+++...+....+. +.+++  +.+...   +++.     ++..++..+++++.|+++||+|||+++
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM---GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            345666677888888888887777664 34444  444432   4443     344566788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcchhH--------HHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHH
Q 022133          122 QLCALPMIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGS  193 (302)
Q Consensus       122 ~~~~~~~~i~~~~~~~~~~~~--------~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~  193 (302)
                      +.+.++++++++++++++++.        .++++|+++|++.|+.++....++.|++|+++|+...+..+.+..+|.+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~  177 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS  177 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999876        588899999999999999999999999999999999999999999998888


Q ss_pred             HHHhhcccc--------cCcchHHHHHHhHHHHHHHHHHhhccCCChHHHH
Q 022133          194 LLIGIPVKE--------IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLY  236 (302)
Q Consensus       194 ~~~~~~~~~--------~~g~w~~~~~~~~~~~~~~~~~~~~~pe~~~~~~  236 (302)
                      ..+...+..        ..+ ||+.|++.+++.++.++.....||+|++..
T Consensus       178 ~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~~~~l~~~~~es~~~~~  227 (438)
T PRK09952        178 TGLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLIALWVRNGMEESAEFEQ  227 (438)
T ss_pred             HHHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHHHHHHHHhCCCChhHHH
Confidence            766554432        345 999999988776666555566889887543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.85  E-value=8.6e-21  Score=161.85  Aligned_cols=191  Identities=21%  Similarity=0.337  Sum_probs=153.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhc-ccC-----CcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 022133           45 SWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDL-GFN-----GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR  118 (302)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr  118 (302)
                      ..+++.+.+.+..++.+..+++.+.++...+.+...+ +-+     .+....+.+..+.++|.++||+++|++.||+|||
T Consensus        35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK  114 (538)
T KOG0252|consen   35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK  114 (538)
T ss_pred             hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence            3455677788889999999999999888877665543 212     2223337888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcc-------hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHH
Q 022133          119 RAFQLCALPMIIGASISATTR-------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM  191 (302)
Q Consensus       119 ~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~  191 (302)
                      +++...++++++++++++++.       -..++.+.|++.|+|.|+-+|+..++++|....+.||..++.......+|..
T Consensus       115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil  194 (538)
T KOG0252|consen  115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL  194 (538)
T ss_pred             hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence            999999999999998777642       1467888999999999999999999999999999999998886666666655


Q ss_pred             HHHHHhhccc----c----------cCcchHHHHHHhHHHHHHHHHHhhccCCChHHH
Q 022133          192 GSLLIGIPVK----E----------IAGWWRICFWVSIVPAAILCLAMVFCAESPHWL  235 (302)
Q Consensus       192 ~~~~~~~~~~----~----------~~g~w~~~~~~~~~~~~~~~~~~~~~pe~~~~~  235 (302)
                      .|.+++..+.    .          ..+.||..+.+++++++..+...+.+|||+++.
T Consensus       195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~  252 (538)
T KOG0252|consen  195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYT  252 (538)
T ss_pred             hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHH
Confidence            5554444332    1          112499999999999998888888899999876

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.85  E-value=5.2e-21  Score=167.48  Aligned_cols=170  Identities=18%  Similarity=0.136  Sum_probs=146.9

Q ss_pred             HHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 022133           60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR  139 (302)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~  139 (302)
                      .+....+....+...|.+.+++|.+.++.  +++.++..++..+++++.|+++||+|||++++.+.++.+++.+++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   81 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLVEEIGLSKTDL--GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST   81 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHHHHhCCCHhHH--HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence            44555666777888889999999887766  8999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHH-HHhhcccccCcchHHHHHHhHHHH
Q 022133          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL-LIGIPVKEIAGWWRICFWVSIVPA  218 (302)
Q Consensus       140 ~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~g~w~~~~~~~~~~~  218 (302)
                      +++.+++.|++.|++.+...+....++.|++|+++|+++.++.+.+..+|..+++ .+++.+.+..+ |++.|++.+++.
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  160 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGIIA  160 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999 56666666666 899988876655


Q ss_pred             HH-HHHHhhccCCCh
Q 022133          219 AI-LCLAMVFCAESP  232 (302)
Q Consensus       219 ~~-~~~~~~~~pe~~  232 (302)
                      ++ .++..++.||+|
T Consensus       161 ~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       161 IIVSLICFLLLRDSP  175 (379)
T ss_pred             HHHHHHHheeeCCCc
Confidence            54 444555677764

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.85  E-value=2.6e-20  Score=161.59  Aligned_cols=171  Identities=26%  Similarity=0.466  Sum_probs=145.9

Q ss_pred             HHHHHHHhhhhccchhhh-hhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 022133           58 LSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (302)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~  136 (302)
                      ++.++.........+..| .+.+++|.+..+.  +++.+++.++..+++++.|+++||+|||++++++.++.+++.++..
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQI--GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCH--HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence            455566666667778888 7888899887776  8999999999999999999999999999999999999999866666


Q ss_pred             hcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHH
Q 022133          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (302)
Q Consensus       137 ~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~  216 (302)
                      ++++.+.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|.+++|.+++.+.+..+ ||+.|++.++
T Consensus        81 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~~~  159 (352)
T PF07690_consen   81 FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLISAI  159 (352)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHHHH
T ss_pred             hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-cccccccccc
Confidence            657777899999999999999999999999999999999999999999999999999999999997777 9999999888


Q ss_pred             HHHHHHHH-hhccCCC
Q 022133          217 PAAILCLA-MVFCAES  231 (302)
Q Consensus       217 ~~~~~~~~-~~~~pe~  231 (302)
                      ..++..++ .++.+++
T Consensus       160 ~~~~~~il~~~~~~~~  175 (352)
T PF07690_consen  160 LSLIAAILFILFLPEP  175 (352)
T ss_dssp             HHHHHHHHHHCCC---
T ss_pred             hhhhhhhhHhhhhhhc
Confidence            87776653 3445544

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.84  E-value=2.6e-20  Score=168.86  Aligned_cols=176  Identities=22%  Similarity=0.323  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~  132 (302)
                      ...+.++.++..++....++..|.+.+++|.+.++.  +++.+.+.++.+++.++.|+++||+|||+.++.+.++.+++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQV--QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh--hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            455667778888888889999999999999887666  899999999999999999999999999999999999999999


Q ss_pred             HHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Q 022133          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (302)
Q Consensus       133 ~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~  212 (302)
                      ++++.++++..++++|+++|++.+...+....++.|++|+++|+++++++..+..+|..++|.+++.+.+..+ ||+.|+
T Consensus        82 ~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f~  160 (485)
T TIGR00711        82 LLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIFL  160 (485)
T ss_pred             HHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceehhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998888 999999


Q ss_pred             HhHHHHHHHHH-HhhccCCC
Q 022133          213 VSIVPAAILCL-AMVFCAES  231 (302)
Q Consensus       213 ~~~~~~~~~~~-~~~~~pe~  231 (302)
                      +.+..+++..+ ..++.||+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~  180 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRD  180 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCc
Confidence            87766665444 34456665

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.84  E-value=8.4e-20  Score=161.99  Aligned_cols=182  Identities=16%  Similarity=0.145  Sum_probs=152.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 022133           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (302)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~  127 (302)
                      +.+.....+.+..+...+....+.+.+|.+.+++|.+..+.  ++..+.+.++..+++++.|+++||+|||++++.+..+
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   87 (406)
T PRK15402         10 QALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWV--PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF   87 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            33444455555666666667777788888999999876655  7889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcch
Q 022133          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (302)
Q Consensus       128 ~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w  207 (302)
                      .+++.+.+..+++++.+++.|++.|++.+...+....++.|.+|+++|++..++......+|..++|.+++.+.+..+ |
T Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~-w  166 (406)
T PRK15402         88 FILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP-W  166 (406)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-c
Confidence            999998888889999999999999999998888888999999999999999999888888899999999998888777 9


Q ss_pred             HHHHHHhHHHHHHHHH-HhhccCCCh
Q 022133          208 RICFWVSIVPAAILCL-AMVFCAESP  232 (302)
Q Consensus       208 ~~~~~~~~~~~~~~~~-~~~~~pe~~  232 (302)
                      |+.|++.++..++..+ .++..||++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        167 RGMFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999887666665544 344578764

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.84  E-value=1.2e-20  Score=170.42  Aligned_cols=183  Identities=17%  Similarity=0.140  Sum_probs=149.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 022133           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (302)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~  128 (302)
                      .+..+.++.++.+....+...++...|.+.+++|++..+.  |++.+++.+++.+++++.|+++||+|||+++.++.++.
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~  104 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTEL--GMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS  104 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence            3444555666666777788888899999999999887765  89999999999999999999999999999998888887


Q ss_pred             HHHHHHHhh-----cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccccc
Q 022133          129 IIGASISAT-----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (302)
Q Consensus       129 ~i~~~~~~~-----~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~  203 (302)
                      +++.+.++.     ++++..++++|++.|++.+...+....+++|++|+++||++++++..+..+|.++++.+..++...
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~  184 (467)
T PRK09556        105 AICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY  184 (467)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence            777665554     588999999999999999999899999999999999999999999999999999998887765543


Q ss_pred             --CcchHHHHHHhHHHHHHH-HHHhhccCCChH
Q 022133          204 --AGWWRICFWVSIVPAAIL-CLAMVFCAESPH  233 (302)
Q Consensus       204 --~g~w~~~~~~~~~~~~~~-~~~~~~~pe~~~  233 (302)
                        .++|+..|.+.+++.++. ++.+++.+++|.
T Consensus       185 ~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~  217 (467)
T PRK09556        185 FFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPE  217 (467)
T ss_pred             hccCcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence              224888887766655544 444455666653

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.84  E-value=1.3e-19  Score=160.15  Aligned_cols=181  Identities=15%  Similarity=0.222  Sum_probs=152.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 022133           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (302)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~  128 (302)
                      .++.+.+.....++..+......+.+|.+.+++|.+.++.  +++.+++.++..++++++|+++||+|||+.++.+.++.
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~   83 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAV--QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF   83 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence            3444555555555555666667778899999999887766  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchH
Q 022133          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (302)
Q Consensus       129 ~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~  208 (302)
                      +++.+++...++++.+++.|++.|++.+...+....+..|.++.++|+.+.++.+.+..+|..++|.+++.+.+..+ ||
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~  162 (394)
T PRK11652         84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WR  162 (394)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hH
Confidence            99998888889999999999999999888888888889999999999999999999999999999999999888777 99


Q ss_pred             HHHHHhHHHHHHH-HHHhhccCCCh
Q 022133          209 ICFWVSIVPAAIL-CLAMVFCAESP  232 (302)
Q Consensus       209 ~~~~~~~~~~~~~-~~~~~~~pe~~  232 (302)
                      +.|++.++..++. ++..++.||++
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~~~~  187 (394)
T PRK11652        163 ACYLFLLLLGAGVTFSMARWMPETR  187 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccC
Confidence            9998876655543 34455678763

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.84  E-value=8.1e-20  Score=165.81  Aligned_cols=185  Identities=15%  Similarity=0.076  Sum_probs=137.6

Q ss_pred             hhhhccchhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH---Hhhcch
Q 022133           65 YHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTRN  140 (302)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~---~~~~~~  140 (302)
                      ...+.+..++|.+. +.+|++....  ++..+...++..++.++.|+++||+|||+.++.+.++..++...   ...+++
T Consensus       264 ~~~~~~~~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  341 (490)
T PRK10642        264 VTYYMLLTYMPSYLSHNLHYSEDHG--VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNV  341 (490)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            33444555677665 4567765543  56777788889999999999999999999988877654433222   223445


Q ss_pred             hHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhH-HHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHH
Q 022133          141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (302)
Q Consensus       141 ~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~  219 (302)
                      ...+++++++.|++.+...+....++.|++|++.|++++++ ++.+ .+++.++|.+.+++.+..+.|+..+++..++++
T Consensus       342 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~-~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~  420 (490)
T PRK10642        342 IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNIS-VLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAV  420 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            67777888998888777777788889999999999999997 5554 455677888888777655447777766667777


Q ss_pred             HHHHHhhccCCChHHHHHh-----CCHHHHHHHHHHHh
Q 022133          220 ILCLAMVFCAESPHWLYKK-----GRTAEAEAEFEKLL  252 (302)
Q Consensus       220 ~~~~~~~~~pe~~~~~~~~-----~~~~~~~~~~~~~~  252 (302)
                      ++++..+++||+|+++.++     ++.+|+.+.+++++
T Consensus       421 i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        421 IGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             HHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence            7777777889999987654     88888888888776

>PRK15075 citrate-proton symporter; Provisional

Probab=99.84  E-value=4.5e-19  Score=158.66  Aligned_cols=180  Identities=22%  Similarity=0.304  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHH-----HHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 022133           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMC-----LGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (302)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~g~l~d~~Grr~~~~~~~~  126 (302)
                      ......++.+...++...++.+.|.+.++++.+..+.. ++..+..     .++..+++++.|+++||+|||++++.+.+
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~   94 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFA-SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLS   94 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHH
Confidence            46677888999999999999999999999988766542 2222222     22335789999999999999999999999


Q ss_pred             HHHHHHHHHhhcchhH--------HHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhh
Q 022133          127 PMIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI  198 (302)
Q Consensus       127 ~~~i~~~~~~~~~~~~--------~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~  198 (302)
                      +.+++++++++++++.        .++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++.+++
T Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~  174 (434)
T PRK15075         95 IMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGY  174 (434)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998876        46889999999999998888999999999999999999988888787777777666


Q ss_pred             ccc--------ccCcchHHHHHHhHHHHHHHHHHhhccCCChH
Q 022133          199 PVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPH  233 (302)
Q Consensus       199 ~~~--------~~~g~w~~~~~~~~~~~~~~~~~~~~~pe~~~  233 (302)
                      .+.        +..| ||+.|++.++...+.++.....||++.
T Consensus       175 ~l~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~~~e~~~  216 (434)
T PRK15075        175 LLNQWLSPAQMAEWG-WRIPFLIGCLIVPFIFLIRRSLEETEE  216 (434)
T ss_pred             HHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            542        3456 999998865544333333444667654

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.84  E-value=2.6e-19  Score=158.06  Aligned_cols=153  Identities=14%  Similarity=0.087  Sum_probs=135.9

Q ss_pred             hccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 022133           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLG  147 (302)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  147 (302)
                      ...++.+|.+.+++|++.++.  +++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+++++++++..+++.
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~  103 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVA--ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSS  103 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHH
Confidence            567889999999999987776  899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHH
Q 022133          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (302)
Q Consensus       148 r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~  223 (302)
                      |++.|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++.+.+....||..+.+.++..++.++
T Consensus       104 r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~  178 (393)
T PRK09705        104 ALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALF  178 (393)
T ss_pred             HHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            999999999999888899999997 779999999999999999999999988877653399887665554444433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.84  E-value=1.9e-19  Score=156.81  Aligned_cols=168  Identities=14%  Similarity=0.072  Sum_probs=143.4

Q ss_pred             HHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 022133           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (302)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~  136 (302)
                      ..+.++.........+.+|.+..+.+.+..+.  +++.++..++.+++++++|+++||+|||++++.+.++.+++.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~   82 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVLAGTGSASVL--SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP   82 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH--HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence            34455555666667777888888877665544  8999999999999999999999999999999999998888887777


Q ss_pred             hcc-----hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHH
Q 022133          137 TTR-----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (302)
Q Consensus       137 ~~~-----~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~  211 (302)
                      +..     +++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|.+++|.+++.+.+..+ |++.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~~  161 (365)
T TIGR00900        83 FVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKWAI  161 (365)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHH
Confidence            666     899999999999999999999999999999999999999999999999999999999999988777 99999


Q ss_pred             HHhHHHHHHHHHHhhc
Q 022133          212 WVSIVPAAILCLAMVF  227 (302)
Q Consensus       212 ~~~~~~~~~~~~~~~~  227 (302)
                      ++.++..++..+..++
T Consensus       162 ~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900       162 WVDAVGFAISALLIVS  177 (365)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8877666655544443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.83  E-value=1e-19  Score=159.14  Aligned_cols=161  Identities=16%  Similarity=0.125  Sum_probs=136.9

Q ss_pred             hhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 022133           67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLL  146 (302)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~  146 (302)
                      .+...+..|.+.+++|++.++.  +++.+++.++..++++++|+++||+|||+++..+.++.+++.++++++++++.+++
T Consensus        19 ~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (377)
T TIGR00890        19 VYTWTLLAPPLGRYFGVGVTAV--AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYL   96 (377)
T ss_pred             HhhhhhHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456778999999999877665  89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHH-h
Q 022133          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA-M  225 (302)
Q Consensus       147 ~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~-~  225 (302)
                      +|++.|++.+..++.....+.+++| ++|+++.++...+..+|.++++.+.+.+.+..+ ||+.|++.++..++..+. +
T Consensus        97 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~  174 (377)
T TIGR00890        97 TYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPAAFIYMGIIFLLVIVLGA  174 (377)
T ss_pred             HHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888888899997 569999999999999998776666666666666 999999877766665444 4


Q ss_pred             hccCCC
Q 022133          226 VFCAES  231 (302)
Q Consensus       226 ~~~pe~  231 (302)
                      ++++++
T Consensus       175 ~~~~~~  180 (377)
T TIGR00890       175 FLIGYP  180 (377)
T ss_pred             HheecC
Confidence            445544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.83  E-value=5.2e-19  Score=159.00  Aligned_cols=174  Identities=13%  Similarity=0.112  Sum_probs=135.6

Q ss_pred             HHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 022133           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (302)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~  135 (302)
                      ..+...........+...+|.+.++ |++..+.  +++.+.+.++.+++++++|+++||+|||++++++.++.+++.+.+
T Consensus        34 ~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~--g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~  110 (452)
T PRK11273         34 IFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM  110 (452)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHH--HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHH
Confidence            3334444444444455677777776 8876665  899999999999999999999999999999999999999888877


Q ss_pred             hhc----chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHH-HHHHHHhhcccccCcchHHH
Q 022133          136 ATT----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL-MGSLLIGIPVKEIAGWWRIC  210 (302)
Q Consensus       136 ~~~----~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~g~w~~~  210 (302)
                      ++.    .++..+++.|++.|++.+...+.....+.|++|+++|++++++++.+..+|. +.+|+++..+....+ ||+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g-w~~~  189 (452)
T PRK11273        111 GFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND-WHAA  189 (452)
T ss_pred             HhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc-HHHH
Confidence            765    3677888999999999998888778889999999999999999999988886 456655433333335 9999


Q ss_pred             HHHhHHHHHH-HHHHhhccCCChH
Q 022133          211 FWVSIVPAAI-LCLAMVFCAESPH  233 (302)
Q Consensus       211 ~~~~~~~~~~-~~~~~~~~pe~~~  233 (302)
                      |++.+++.++ .++..+++||+|+
T Consensus       190 f~i~~~~~~~~~~l~~~~~~~~~~  213 (452)
T PRK11273        190 LYMPAFAAILVALFAFAMMRDTPQ  213 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCHh
Confidence            9887665555 4555667888764

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.83  E-value=5.3e-19  Score=159.63  Aligned_cols=159  Identities=25%  Similarity=0.330  Sum_probs=130.5

Q ss_pred             HhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 022133           64 GYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG  143 (302)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~  143 (302)
                      ++........++.+..++|-+++.   .|+.++..++.+++.++.|.++|.||||..++.+.++..+++++++.++|...
T Consensus        57 ~~~~~~~a~~l~~I~~diG~~~~~---~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~  133 (599)
T PF06609_consen   57 YFVLVLPASILPYINADIGGSDNW---SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNT  133 (599)
T ss_pred             HHHHhccHHHHHHHHHhcCCCccc---hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHH
Confidence            334444566778888998876544   48999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHH
Q 022133          144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (302)
Q Consensus       144 ~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~  223 (302)
                      ++++..+.|++.|... +....++|+.|.+.|+.+.++......+....++.++..+....+ |||.|++.++...++++
T Consensus       134 ~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~-WRw~~~~~~i~~~i~~v  211 (599)
T PF06609_consen  134 FIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSG-WRWIFYIFIIWSGIALV  211 (599)
T ss_pred             HHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCC-cchHHHHHHHHHHHHHH
Confidence            9999999999987776 456678999999999988877766665556677778776665555 99999998777666555


Q ss_pred             Hhhc
Q 022133          224 AMVF  227 (302)
Q Consensus       224 ~~~~  227 (302)
                      ..++
T Consensus       212 l~~~  215 (599)
T PF06609_consen  212 LIFF  215 (599)
T ss_pred             HHHH
Confidence            4433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.82  E-value=4.2e-19  Score=155.16  Aligned_cols=174  Identities=18%  Similarity=0.166  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHhhhhccchhhhh-hhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 022133           55 VATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (302)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~  133 (302)
                      ...++.+..........++.|. +.+++|++..+.  +++.+++.++.+++++++|+++||+|||+.++++.++.+++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~   82 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQL--GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL   82 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHh--hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            3455555555566667888885 888899887766  8999999999999999999999999999999999999999999


Q ss_pred             HHhhcc-hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccc----------
Q 022133          134 ISATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE----------  202 (302)
Q Consensus       134 ~~~~~~-~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~----------  202 (302)
                      ++++.+ +++.+++.|++.|++.+. .+....+++|++|+++|+++.+++..+..+|..+++.+++.+..          
T Consensus        83 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~  161 (366)
T TIGR00886        83 WAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA  161 (366)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            999888 999999999999998654 45677899999999999999999887777777777666655443          


Q ss_pred             cCcchHHHHHH-hH-HHHHHHHHHhhccCCCh
Q 022133          203 IAGWWRICFWV-SI-VPAAILCLAMVFCAESP  232 (302)
Q Consensus       203 ~~g~w~~~~~~-~~-~~~~~~~~~~~~~pe~~  232 (302)
                      ..+ ||+.+++ .+ +..+..++...+.+|+|
T Consensus       162 ~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (366)
T TIGR00886       162 HLA-WGWAFVIVPAGILLLPALLIFFVGADTP  192 (366)
T ss_pred             ccc-ccchhHHHHHHHHHHHHHHHHHhcccCC
Confidence            124 8998843 23 33333444455566654

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.82  E-value=3.6e-19  Score=155.16  Aligned_cols=165  Identities=15%  Similarity=0.085  Sum_probs=143.8

Q ss_pred             hhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 022133           67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLL  146 (302)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~  146 (302)
                      ....+...|.+.+++|++.++. .|.+.++++.+++++++++|+++||+|.|+++.++.+.+++..++++++.++..+.+
T Consensus        42 R~n~s~a~p~L~~elglT~~qv-~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i  120 (511)
T TIGR00806        42 RPGESFITPYLLTVLNFTEETV-TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL  120 (511)
T ss_pred             hchHHHHHHHHHHHcCCCHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456667888889999998872 389999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHH---HhHHHHHHHHH
Q 022133          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW---VSIVPAAILCL  223 (302)
Q Consensus       147 ~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~---~~~~~~~~~~~  223 (302)
                      .|++.|++.|..+ ....++..|+|+++|+++.++.+.+..+|.++++++++. ....| ||....   +......++++
T Consensus       121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~g-Wr~y~~Ln~Isl~s~~~a~~  197 (511)
T TIGR00806       121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLG-WISYSTLNIISLVFMTFSVF  197 (511)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC-chhHHHHHHHHHHHHHHHHH
Confidence            9999999999999 999999999999999999999999999999999999998 44556 776554   44555555677


Q ss_pred             HhhccCCChHHH
Q 022133          224 AMVFCAESPHWL  235 (302)
Q Consensus       224 ~~~~~pe~~~~~  235 (302)
                      ..+++|..++.+
T Consensus       198 ~a~~LP~~~~sl  209 (511)
T TIGR00806       198 LALFLKRPKRSL  209 (511)
T ss_pred             HHHhCCCCchhh
Confidence            778888665544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.82  E-value=7.1e-19  Score=155.32  Aligned_cols=173  Identities=20%  Similarity=0.237  Sum_probs=146.2

Q ss_pred             HHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 022133           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (302)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~  135 (302)
                      .....+..........+.+|.+.+++|.+.++.  ++..+.+.++..+++++.|+++||+|||+.++.+.++.+++.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~   85 (392)
T PRK10473          8 SFALVLLYPAGIDMYLVGLPRIAADLNASEAQL--HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLC   85 (392)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            334444444455556678999999998876655  899999999999999999999999999999999999999999998


Q ss_pred             hhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhH
Q 022133          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (302)
Q Consensus       136 ~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~  215 (302)
                      ..+++...+++.|++.|++.+...+....++.|++|+++|+++.++.+....+|..++|.+++.+.+..+ |++.+++.+
T Consensus        86 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~~~~  164 (392)
T PRK10473         86 SLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFYTMA  164 (392)
T ss_pred             HHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHHHHH
Confidence            8889999999999999999998888899999999999999999999999999999999999988877777 999988876


Q ss_pred             HHHHHHH-HHhhccCCC
Q 022133          216 VPAAILC-LAMVFCAES  231 (302)
Q Consensus       216 ~~~~~~~-~~~~~~pe~  231 (302)
                      +..++.. +..+++||+
T Consensus       165 ~~~~i~~~~~~~~~~~~  181 (392)
T PRK10473        165 AMGILVLLLSLFILKET  181 (392)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            6655543 344567776

>PRK10504 putative transporter; Provisional

Probab=99.82  E-value=4.1e-19  Score=160.56  Aligned_cols=177  Identities=22%  Similarity=0.314  Sum_probs=153.3

Q ss_pred             HHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 022133           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (302)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~  131 (302)
                      ..+.+.++.++..++...+++.+|.+.+++|.+..+.  +++.+.+.++.+++.+++|+++||+|||++++.+.++.+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   88 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHM--HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG   88 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            3556667777778888888889999999999876655  78899999999999999999999999999999999988888


Q ss_pred             HHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHH
Q 022133          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (302)
Q Consensus       132 ~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~  211 (302)
                      .+++.++++++.+++.|+++|++.+...+....++.|++|+++|+++.++......+|..++|.+++.+.+..+ ||+.|
T Consensus        89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~f  167 (471)
T PRK10504         89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWIF  167 (471)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHHH
Confidence            88888889999999999999999999999999999999999999999999999999999999999999988887 99999


Q ss_pred             HHhHHHHHHHHHHh-hccCCC
Q 022133          212 WVSIVPAAILCLAM-VFCAES  231 (302)
Q Consensus       212 ~~~~~~~~~~~~~~-~~~pe~  231 (302)
                      ++......+..+.. ...|+.
T Consensus       168 ~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        168 LINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHHHHHHHHHHHHHhCCCc
Confidence            98766655544433 444544

>PRK11043 putative transporter; Provisional

Probab=99.82  E-value=8.3e-19  Score=155.34  Aligned_cols=169  Identities=20%  Similarity=0.172  Sum_probs=144.5

Q ss_pred             HHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 022133           60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR  139 (302)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~  139 (302)
                      .....+....+.+..|.+.+++|.+.++.  ++..+++.++..++++++|+++||+|||+.++.+.++.+++.+++.+.+
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   92 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAV--SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE   92 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            33444555666777888889999876655  8999999999999999999999999999999999999999998888899


Q ss_pred             hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHH
Q 022133          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (302)
Q Consensus       140 ~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~  219 (302)
                      +++.+++.|++.|++.+...+....++.|++|+++++...+.......+|..++|.+++.+.+..+ ||+.|++.++..+
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~  171 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFATLFAITL  171 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHH
Confidence            999999999999999888877778899999999999999998888888999999999999888877 9999988777766


Q ss_pred             HHHHHhhccCCC
Q 022133          220 ILCLAMVFCAES  231 (302)
Q Consensus       220 ~~~~~~~~~pe~  231 (302)
                      +..+..++++|+
T Consensus       172 ~~~~~~~~~~~~  183 (401)
T PRK11043        172 LLILPTLRLKPS  183 (401)
T ss_pred             HHHHHHHHcCCC
Confidence            665555555554

>PRK03699 putative transporter; Provisional

Probab=99.82  E-value=1e-18  Score=154.46  Aligned_cols=174  Identities=15%  Similarity=0.152  Sum_probs=149.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 022133           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (302)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~  129 (302)
                      ++..+.+.+..+..+......+..+|.+.+++|++.++.  +++.+.+.++..+++++.|+++||+|||++++.+.++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          6 IKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSM--SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            345566677777777877888889999999999887665  899999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccc-cCcchH
Q 022133          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-IAGWWR  208 (302)
Q Consensus       130 i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~g~w~  208 (302)
                      ++.++++++++++.++++|++.|++.+...+....++.|++|+++|+.+++..+....+|..++|.+.+.+.. ..+ ||
T Consensus        84 i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g-w~  162 (394)
T PRK03699         84 LAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE-WY  162 (394)
T ss_pred             HHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HH
Confidence            9999999999999999999999999998888888999999999999999999888888998899988877654 445 99


Q ss_pred             HHHHHhHHHHHHHHHHhh
Q 022133          209 ICFWVSIVPAAILCLAMV  226 (302)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~  226 (302)
                      +.|++.++..++..+..+
T Consensus       163 ~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        163 WVYACIGLVYVAIFILTL  180 (394)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999887666655444433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.81  E-value=3.5e-19  Score=158.28  Aligned_cols=197  Identities=19%  Similarity=0.303  Sum_probs=153.7

Q ss_pred             hcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHhhhhcc
Q 022133           80 DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGL  157 (302)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r~~~g~~~~~  157 (302)
                      +++++.++  .+++.+.++.|+++++++.|+++||+|-|+++..+.++.+++++++.++.  ++..+++.|+++|++.|.
T Consensus        67 ~~~ws~~~--k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   67 EYDWSSTE--KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             eecCCHHH--HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            34555444  48999999999999999999999999999999999999999999988764  445778999999999999


Q ss_pred             hhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccccc-CcchHHHHHHhHHHHHHHHHHhhc-cCCChHHH
Q 022133          158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-AGWWRICFWVSIVPAAILCLAMVF-CAESPHWL  235 (302)
Q Consensus       158 ~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~w~~~~~~~~~~~~~~~~~~~~-~pe~~~~~  235 (302)
                      .+|....+.+.|+|+++|++..++...+..+|.+++..+++.+.+. .| |+..|++.++.+++..+++++ ..|+|...
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~~~d~P~~h  223 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLFYSDSPSKH  223 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence            9999999999999999999999999999999999999999999988 66 999999998888887776654 45555310


Q ss_pred             HHhCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCCcccHHHhhcCCchhHHHHHH
Q 022133          236 YKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRGRYHAL  294 (302)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (302)
                        +.-+++   +.+++..+          +.++..++..+.+|+++++++..+..+++.
T Consensus       224 --~~is~~---El~~I~~~----------k~~~~~~~~~~vP~~~i~ts~~vwai~~~~  267 (466)
T KOG2532|consen  224 --PNISEK---ELKYIEKG----------KSEAHVKKKPPVPYKAILTSPPVWAIWISA  267 (466)
T ss_pred             --CCCCHH---HHHHHHhc----------ccccccCCCCCCCHHHHHcCHHHHHHHHHH
Confidence              111111   12221111          111111122577899999998877665544

>PRK12382 putative transporter; Provisional

Probab=99.81  E-value=1.8e-18  Score=152.81  Aligned_cols=175  Identities=16%  Similarity=0.178  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHhhhhccchhhhh-hhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 022133           54 LVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (302)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~  132 (302)
                      ..+.++.++.....+...+.+|. +.+++|.+..+.  |++.+++.++..++++++|+++||+|||++++.+.+..+++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~--g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~   95 (392)
T PRK12382         18 FRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMV--GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAG   95 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHH--HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence            34444555555566667777776 467888876665  999999999999999999999999999999999888776654


Q ss_pred             HHHh---h-----cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC
Q 022133          133 SISA---T-----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (302)
Q Consensus       133 ~~~~---~-----~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  204 (302)
                      +.+.   .     .+++..++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~  175 (392)
T PRK12382         96 LAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF  175 (392)
T ss_pred             HHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4321   1     2477889999999999999888888889999999999999999999999999999999999888877


Q ss_pred             cchHHHHHHhHHHHHHHHHHhhccCCC
Q 022133          205 GWWRICFWVSIVPAAILCLAMVFCAES  231 (302)
Q Consensus       205 g~w~~~~~~~~~~~~~~~~~~~~~pe~  231 (302)
                      + |+..+.+..+..++.++.....||.
T Consensus       176 g-~~~~~~~~~~~~~~~~~~~~~~~~~  201 (392)
T PRK12382        176 G-FAALALTTMVLPLLAWAFNGTVRKV  201 (392)
T ss_pred             C-hHHHHHHHHHHHHHHHHHHHhccCC
Confidence            7 8987776555444443333334543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.81  E-value=6.7e-19  Score=156.98  Aligned_cols=178  Identities=21%  Similarity=0.231  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHHHhhhhc-cchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGV-VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~  131 (302)
                      +..++...+........ ....+..+.+|.+...++.  +.+.+++.++++++.++++.+.||++-.+.+....+++.+.
T Consensus        47 ~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l--~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~  124 (495)
T KOG2533|consen   47 LPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQL--GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLF  124 (495)
T ss_pred             HHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhh--hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHH
Confidence            33334444444444332 3333444557777776766  89999999999999999999999999888888888888877


Q ss_pred             HHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccc------ccCc
Q 022133          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK------EIAG  205 (302)
Q Consensus       132 ~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~g  205 (302)
                      .++....+|++.+++.|++.|+..+..+|....+++.|+.+++|+..++++.....+|.++|.+++..+.      ...|
T Consensus       125 ~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g  204 (495)
T KOG2533|consen  125 GFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG  204 (495)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC
Confidence            7777778999999999999999999999999999999999999999999999999999999999988863      3345


Q ss_pred             chHHHHHHhHHHHHH-HHHHhhccCCChH
Q 022133          206 WWRICFWVSIVPAAI-LCLAMVFCAESPH  233 (302)
Q Consensus       206 ~w~~~~~~~~~~~~~-~~~~~~~~pe~~~  233 (302)
                       ||+.|++.+++.+. ++++++++|+.|.
T Consensus       205 -W~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  205 -WRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             -ceeehhHHHHHHHHHHheEEEEecCChh
Confidence             99999997766665 5566778999875

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.81  E-value=7.7e-19  Score=154.20  Aligned_cols=162  Identities=20%  Similarity=0.312  Sum_probs=143.3

Q ss_pred             hhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 022133           67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLL  146 (302)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~  146 (302)
                      .....+.+|.+.+++|.+.++.  +++.+++.++..++.+++|+++||+|||+.+..+.++.+++.+.+.+.++++.+++
T Consensus         7 ~~~~~p~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   84 (377)
T PRK11102          7 IDMYLPALPVIAADFGVSAGSV--QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIY   84 (377)
T ss_pred             HHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            3456688889999999877665  89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHH-HHh
Q 022133          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC-LAM  225 (302)
Q Consensus       147 ~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~-~~~  225 (302)
                      .|++.|++.+...+....++.|++|+++|++++++......+|..++|.+++.+.+..+ |++.|++.++..++.. +..
T Consensus        85 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         85 MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988999999999999999999999999999999999999999888777 9999988766665544 444


Q ss_pred             hccCCC
Q 022133          226 VFCAES  231 (302)
Q Consensus       226 ~~~pe~  231 (302)
                      +++||+
T Consensus       164 ~~~~~~  169 (377)
T PRK11102        164 FFIPET  169 (377)
T ss_pred             HhCCcc
Confidence            567775

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.80  E-value=8.7e-18  Score=147.85  Aligned_cols=151  Identities=21%  Similarity=0.220  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 022133           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (302)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~  131 (302)
                      .+..+.++.++........++.+|.+.+++|.+..+.  |++.+.+.++..+++++.|+++||+|||+++..+.++.+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~   84 (381)
T PRK03633          7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQV--GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG   84 (381)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556667777888888889999999999999876555  99999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC
Q 022133          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (302)
Q Consensus       132 ~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  204 (302)
                      .++++++++++.++++|++.|++.+...+.....+.+..|+++|+++++.+..+..+|..++|.+++.+.+..
T Consensus        85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  157 (381)
T PRK03633         85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL  157 (381)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            9999999999999999999999999888888788888999999999999999999999999999999887653

>PRK10133 L-fucose transporter; Provisional

Probab=99.80  E-value=2.4e-18  Score=153.86  Aligned_cols=151  Identities=18%  Similarity=0.196  Sum_probs=132.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 022133           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (302)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~  127 (302)
                      .....+....+..++.++......+..|.+.+++|.+..+.  ++..+.+.+++.+++++.|+++||+|||+++..+..+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~--gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~  100 (438)
T PRK10133         23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL  100 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            34445566667777778888888999999999999877665  8999999999999999999999999999999999999


Q ss_pred             HHHHHHHH---hhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcc
Q 022133          128 MIIGASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (302)
Q Consensus       128 ~~i~~~~~---~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  200 (302)
                      .+++++++   ..++++..++++|+++|++.+...+....++.|+.|.++|...+++.+....+|..+++.+++.+
T Consensus       101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998775   46789999999999999999999999999999988777777789999999999999999887654

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.80  E-value=2.6e-18  Score=152.30  Aligned_cols=171  Identities=16%  Similarity=0.167  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~  132 (302)
                      +.+++...+..++..+...+..|.+++++|++..+.  |++.+.+.+++.+++++.|++.||+|||+.++.+.++.+++.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~--g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQA--ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            455667777778888888899999999999877665  899999999999999999999999999999999999999988


Q ss_pred             HHHhh---cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC-----
Q 022133          133 SISAT---TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA-----  204 (302)
Q Consensus       133 ~~~~~---~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----  204 (302)
                      +++..   .++++.+++.|++.|++.|...+....++.++.|+++|++.+++.+....+|..++|.+++.+....     
T Consensus        83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~  162 (410)
T TIGR00885        83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS  162 (410)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence            87543   4688999999999999999999999999999999999999999999999999999999988764221     


Q ss_pred             --------------------cchHHHHHHhHHHHHHHHHHh
Q 022133          205 --------------------GWWRICFWVSIVPAAILCLAM  225 (302)
Q Consensus       205 --------------------g~w~~~~~~~~~~~~~~~~~~  225 (302)
                                          ..||++|++.++..++..+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                128999987766555544443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.80  E-value=2.1e-19  Score=150.07  Aligned_cols=146  Identities=23%  Similarity=0.267  Sum_probs=120.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHH
Q 022133           86 NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY  165 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~  165 (302)
                      .....|.+.+.+.+..++.++.+|.++||+|||++++++.+..++..++.+.+.|+..+++.|++.|+..|.. .+..++
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAi  144 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAI  144 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHH
Confidence            3344589999999999999999999999999999999999999999999999999977777799999999877 477899


Q ss_pred             hhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccc---cCcchHHH--HHHhHHHHHH-HHHHhhccCCCh
Q 022133          166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE---IAGWWRIC--FWVSIVPAAI-LCLAMVFCAESP  232 (302)
Q Consensus       166 ~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~g~w~~~--~~~~~~~~~~-~~~~~~~~pe~~  232 (302)
                      ++|++++++|+.+++..+++.++|.++||.+|+++.+   ..|.+...  -++..+.+.. ..+..+++|||-
T Consensus       145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL  217 (451)
T ss_pred             HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            9999999999999999999999999999999999987   33321111  1222233333 345567899983

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.80  E-value=2e-18  Score=155.29  Aligned_cols=175  Identities=14%  Similarity=0.100  Sum_probs=140.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 022133           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (302)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~  129 (302)
                      |..+..+.+...........++.+.+.+.+++|.+.++.  +++.+.+.++..++.+++|+++||+|||++++.+.++.+
T Consensus        18 w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~   95 (455)
T TIGR00892        18 WVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSET--AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLAS   95 (455)
T ss_pred             hHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHH--HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHH
Confidence            433333333333322333446778889999999987776  789999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcchhHHHHH-HHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchH
Q 022133          130 IGASISATTRNLIGMLL-GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (302)
Q Consensus       130 i~~~~~~~~~~~~~~~~-~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~  208 (302)
                      +++++++++++++.+++ .|++.|++.+...+....++.+++| ++|+++.++.+.+..+|..++|.+++.+.+..| ||
T Consensus        96 ~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g-wr  173 (455)
T TIGR00892        96 LGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG-WR  173 (455)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC-hH
Confidence            99999888888887765 4689999998776677788889996 789999999999999999999999998888777 99


Q ss_pred             HHHHHhHHHHHHHHHHhhcc
Q 022133          209 ICFWVSIVPAAILCLAMVFC  228 (302)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~  228 (302)
                      +.|++.+++.+++.+..+++
T Consensus       174 ~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       174 GSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99998877766555444443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.80  E-value=1.6e-19  Score=167.48  Aligned_cols=173  Identities=16%  Similarity=0.192  Sum_probs=146.0

Q ss_pred             HHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 022133           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (302)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~  136 (302)
                      .+..+......+.++..++.+.++++++..+.  |++.+.+.++++++.++.++++||+|||+.+.++.+++++++++++
T Consensus        39 ~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~--G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~a  116 (633)
T TIGR00805        39 TCAQLQGLLYNGLVNSSLTTIERRFKLSTSSS--GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLS  116 (633)
T ss_pred             HHHHHHHHHHHHHHHhhchhhhhhhCCCCCcc--eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHh
Confidence            34555555666778888999999999987776  8999999999999999999999999999999999999999999887


Q ss_pred             hcc---------------------------------------------------hhHHHHHHHHHHhhhhcchhhhHHHH
Q 022133          137 TTR---------------------------------------------------NLIGMLLGRFVVGTGMGLGPTVAALY  165 (302)
Q Consensus       137 ~~~---------------------------------------------------~~~~~~~~r~~~g~~~~~~~~~~~~~  165 (302)
                      +.+                                                   .+..++++|+++|+|.+..++...++
T Consensus       117 lphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~  196 (633)
T TIGR00805       117 LPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISY  196 (633)
T ss_pred             ChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchh
Confidence            642                                                   24567789999999999999999999


Q ss_pred             hhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC---------------------cchHHHHHHhHHHHHHHHHH
Q 022133          166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA---------------------GWWRICFWVSIVPAAILCLA  224 (302)
Q Consensus       166 ~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------------------g~w~~~~~~~~~~~~~~~~~  224 (302)
                      +.|++|+++|+..++++..+..+|..+|+++++.+.+..                     |.|+..|++.++++++..+.
T Consensus       197 i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~  276 (633)
T TIGR00805       197 IDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP  276 (633)
T ss_pred             hhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998876432                     12677787777776666566


Q ss_pred             hhccCCC
Q 022133          225 MVFCAES  231 (302)
Q Consensus       225 ~~~~pe~  231 (302)
                      ++++|++
T Consensus       277 l~~~p~~  283 (633)
T TIGR00805       277 FFFFPKA  283 (633)
T ss_pred             HHhCccc
Confidence            6667765

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.80  E-value=1.8e-18  Score=155.02  Aligned_cols=177  Identities=14%  Similarity=0.095  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~  132 (302)
                      +....+................|.+.+ .|.+.++.  +++.+++.++..+++++.|+++||+|||+.++.+.++.+++.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~  105 (438)
T TIGR00712        29 FLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGEL--GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVM  105 (438)
T ss_pred             HHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHh--HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHH
Confidence            333444444444444445556666665 58776665  899999999999999999999999999999999998888888


Q ss_pred             HHHhhc----chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccc-cCcch
Q 022133          133 SISATT----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-IAGWW  207 (302)
Q Consensus       133 ~~~~~~----~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~g~w  207 (302)
                      ++++..    .++..+.+.|++.|++.+..++.....+.|++|+++|++++++++.+..+|..+++.+.+.... ..+ |
T Consensus       106 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~-w  184 (438)
T TIGR00712       106 LLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND-W  184 (438)
T ss_pred             HHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh-h
Confidence            776654    4566778889999999998888888999999999999999999999999999888877665443 345 9


Q ss_pred             HHHHHHhHHHHHHH-HHHhhccCCChH
Q 022133          208 RICFWVSIVPAAIL-CLAMVFCAESPH  233 (302)
Q Consensus       208 ~~~~~~~~~~~~~~-~~~~~~~pe~~~  233 (302)
                      |..|++.++..++. ++.++++||+|+
T Consensus       185 ~~~f~~~~~~~~i~~~~~~~~~~~~~~  211 (438)
T TIGR00712       185 HAALYFPAICAIIVALFAFAMMRDTPQ  211 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            99999877766654 455566788764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.80  E-value=1.3e-18  Score=154.01  Aligned_cols=175  Identities=19%  Similarity=0.211  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhh-hhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~  131 (302)
                      +....+..++......+..+.+|. +.+++|.+..+.  |++.+++.++.++++++.|+++||+|||++++.+.++.+++
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (399)
T PRK05122         17 IVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLA--GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS   94 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH--HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence            445666666667777778888886 457788876655  89999999999999999999999999999999999888776


Q ss_pred             HHHHhhc---c-----hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccccc
Q 022133          132 ASISATT---R-----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (302)
Q Consensus       132 ~~~~~~~---~-----~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~  203 (302)
                      .+.+.++   +     ++..+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~  174 (399)
T PRK05122         95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW  174 (399)
T ss_pred             HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence            6554432   2     4667889999999999999888889999999999999999999999999999999999998888


Q ss_pred             CcchHHHHHHhHHHHHHHHHHhhccCC
Q 022133          204 AGWWRICFWVSIVPAAILCLAMVFCAE  230 (302)
Q Consensus       204 ~g~w~~~~~~~~~~~~~~~~~~~~~pe  230 (302)
                      .+ |+..+++..+..++..+.....|+
T Consensus       175 ~g-~~~~~~~~~~~~~~~~~~~~~~~~  200 (399)
T PRK05122        175 GG-LAGLGLLIMLLALLGLLLARPRPA  200 (399)
T ss_pred             cc-HHHHHHHHHHHHHHHHHHHhcCCC
Confidence            88 898887766655544444433444

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.80  E-value=4.5e-18  Score=150.21  Aligned_cols=170  Identities=12%  Similarity=0.066  Sum_probs=137.4

Q ss_pred             HHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 022133           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (302)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~  135 (302)
                      ..++.++..+.........+.+..+++.+....  +++.+++.++++++.+++|+++||+|||++++++.++.+++++.+
T Consensus         8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~   85 (393)
T PRK11195          8 IMAAQFFSALADNALLFAAIALLKELHYPDWSQ--PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM   85 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence            445555555544444455555677777665544  899999999999999999999999999999999999988888776


Q ss_pred             hhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhH
Q 022133          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (302)
Q Consensus       136 ~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~  215 (302)
                      .+..+.   ++.|+++|++.+...|...+++.|++|+++|+++.++.+....+|..+||.+++.+.+..  |+..+.+.+
T Consensus        86 ~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~--~~~~~~i~~  160 (393)
T PRK11195         86 LFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH--AEAALAVCA  160 (393)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            665553   678999999999999999999999999999999999999999999999999999988743  666666655


Q ss_pred             HHHHHHHHHhhccCCCh
Q 022133          216 VPAAILCLAMVFCAESP  232 (302)
Q Consensus       216 ~~~~~~~~~~~~~pe~~  232 (302)
                      ...++.++..+++||+|
T Consensus       161 ~~~~~~~~~~~~l~~~~  177 (393)
T PRK11195        161 LIYLLAALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHhcCCCCc
Confidence            55555555566788764

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.80  E-value=4e-18  Score=150.77  Aligned_cols=179  Identities=12%  Similarity=0.021  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhccchhhhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 022133           50 FPHVLVATLSSFLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (302)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~  128 (302)
                      ++.+.+..++.++........++..+.+.+ ++|++.++.  +++.+++.+++.+++++.|++.||+|.|+++.++.++.
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~--g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~  110 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQL--FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAIL  110 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            345556666666666667777777777766 788887766  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc-----chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccc--
Q 022133          129 IIGASISATT-----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK--  201 (302)
Q Consensus       129 ~i~~~~~~~~-----~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~--  201 (302)
                      ++.++.++++     +++..+++.|++.|++ +..++.....+++++|+++||+++|+......+|..+++++.+.+.  
T Consensus       111 ~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~  189 (462)
T PRK15034        111 IIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFV  189 (462)
T ss_pred             HHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            9999888876     7999999999999997 6788889999999999999999999986666666655544443322  


Q ss_pred             ---cc------------CcchHHHHHHhHHHHHHHHHH-hhccCCC
Q 022133          202 ---EI------------AGWWRICFWVSIVPAAILCLA-MVFCAES  231 (302)
Q Consensus       202 ---~~------------~g~w~~~~~~~~~~~~~~~~~-~~~~pe~  231 (302)
                         ..            .-+|+..+++..+..++..+. ++++++.
T Consensus       190 ~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~  235 (462)
T PRK15034        190 PVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI  235 (462)
T ss_pred             HHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence               11            112677776666655554444 4445543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.79  E-value=1.2e-17  Score=148.15  Aligned_cols=176  Identities=24%  Similarity=0.212  Sum_probs=146.6

Q ss_pred             HHHHHHHHHHHhhhhccchhhhhhhhhcccCCcch---hhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 022133           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTL---AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII  130 (302)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i  130 (302)
                      ....++.++.+...+...+++|.+.+++|.+..+.   ..|++.++..++..++++++|+++||+|||+.++.+.++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   96 (408)
T PRK09874         17 TVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGI   96 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHH
Confidence            34455666667777778889999999998876543   247888999999999999999999999999999999999999


Q ss_pred             HHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHH
Q 022133          131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (302)
Q Consensus       131 ~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~  210 (302)
                      +.+++...++++.+++.|++.|++.+ ..+....++.+++|+++|+++.++...+..+|.+++|.+++.+.+..+ |++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~  174 (408)
T PRK09874         97 VMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRPV  174 (408)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHH
Confidence            88888888999999999999999765 456777888999999999999999999999999999999999887777 9999


Q ss_pred             HHHhHHHHHHHHH-HhhccCCC
Q 022133          211 FWVSIVPAAILCL-AMVFCAES  231 (302)
Q Consensus       211 ~~~~~~~~~~~~~-~~~~~pe~  231 (302)
                      |++.++..++..+ ..+++||+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        175 FFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhccC
Confidence            9887766655444 34556665

>PRK10054 putative transporter; Provisional

Probab=99.78  E-value=6.3e-18  Score=149.36  Aligned_cols=173  Identities=14%  Similarity=0.122  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHhhhhccchhhhhh-hhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 022133           55 VATLSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (302)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~  133 (302)
                      .+....++.....+...++++.+ .+++|++..+.  |+..+++.++.++++++.|+++||+|||++++++.++.+++.+
T Consensus        11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~   88 (395)
T PRK10054         11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLI--GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI   88 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence            44455555566666666766654 46688877665  8999999999999999999999999999999999999888888


Q ss_pred             HHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHH
Q 022133          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (302)
Q Consensus       134 ~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~  213 (302)
                      +.++.++++.+++++++.|.+.+...+....+..|.+|+++|+++.++......+|.+++|.+++.+.. .+ |+..|++
T Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f~~  166 (395)
T PRK10054         89 AIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPFWL  166 (395)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHHHH
Confidence            888889998888889888888777778888999999999999999999999999999999999998875 45 8999988


Q ss_pred             hHHHHHHHHHH-hhccCCC
Q 022133          214 SIVPAAILCLA-MVFCAES  231 (302)
Q Consensus       214 ~~~~~~~~~~~-~~~~pe~  231 (302)
                      .++..++.++. .+++|++
T Consensus       167 ~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        167 AAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence            77666665443 3445654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.78  E-value=9.3e-18  Score=156.69  Aligned_cols=138  Identities=14%  Similarity=0.023  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCC
Q 022133           92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP  171 (302)
Q Consensus        92 ~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p  171 (302)
                      +...+..++.+++.++.|+++||+|||++++++.++.++++++.++.++...+++++++.|++.++..+...++++|++|
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P  678 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP  678 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34556668889999999999999999999999999999999988888887778888888898888888899999999999


Q ss_pred             CCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhccCCC
Q 022133          172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (302)
Q Consensus       172 ~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~pe~  231 (302)
                      ++.|++++|+.+....+|.+++|.+++.+.+..  ...+|++.++..+++.++.+++|||
T Consensus       679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~--~~~pf~i~a~~lll~~ll~~~LPET  736 (742)
T TIGR01299       679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGIT--KAAPILFASAALACGGLLALKLPDT  736 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999998776543  4567777777777777777778998

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.78  E-value=1.5e-17  Score=146.67  Aligned_cols=233  Identities=15%  Similarity=0.101  Sum_probs=157.1

Q ss_pred             CcchhhhhhhhcccCCCCCCCCccchhh--hhhhhcCcccccc----CCCCcchhHHHHHHHHHHHHHHHhhhhccchhh
Q 022133            1 MWGRQREASMMYKRTSSRDRSSTFDVEE--TTALVQNGTEVEN----TNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPL   74 (302)
Q Consensus         1 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (302)
                      +|||.+||++.++.+++.+++++...+.  +.++.+.++++..    ...+...++...+.+.+.......+.+.+..|.
T Consensus       214 ~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Ys  293 (485)
T KOG0569|consen  214 KKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYS  293 (485)
T ss_pred             HcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHH
Confidence            3899999999999999876544332221  1111111110111    011112222222333333333334455677888


Q ss_pred             hhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc---ch-h---HH--HH
Q 022133           75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT---RN-L---IG--ML  145 (302)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~---~~-~---~~--~~  145 (302)
                      ..+.++.|++.+++  -+.+....+...+.++++.++.||+|||+.++++..++.+..+++...   .+ .   ..  .+
T Consensus       294 t~i~~~aG~~~~~a--~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i  371 (485)
T KOG0569|consen  294 TSIFKTAGFTPEEA--QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCI  371 (485)
T ss_pred             HHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            88999999988877  588888899999999999999999999999999999988888766542   11 1   11  12


Q ss_pred             HHHHHHhhhhcch-hhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHH-HHHHH
Q 022133          146 LGRFVVGTGMGLG-PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA-AILCL  223 (302)
Q Consensus       146 ~~r~~~g~~~~~~-~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~-~~~~~  223 (302)
                      ++.++..++.+.. .|+.+-+.+|++|++.|..++++......+..++.......+.+..|.  +.|++..+++ +..+.
T Consensus       372 ~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~i~  449 (485)
T KOG0569|consen  372 AAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFLIY  449 (485)
T ss_pred             HHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHH
Confidence            3333333333322 468888999999999999999999999999999999998888888874  5555544444 44566


Q ss_pred             HhhccCCChHHHHHhCCHHH
Q 022133          224 AMVFCAESPHWLYKKGRTAE  243 (302)
Q Consensus       224 ~~~~~pe~~~~~~~~~~~~~  243 (302)
                      ++.++|||      |+|+..
T Consensus       450 ~~~~lPET------kgr~~~  463 (485)
T KOG0569|consen  450 LYRYLPET------KGRTPY  463 (485)
T ss_pred             HHHhCccc------CCCCHH
Confidence            67789999      777654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.77  E-value=6.4e-18  Score=146.25  Aligned_cols=171  Identities=32%  Similarity=0.472  Sum_probs=150.5

Q ss_pred             HHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 022133           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (302)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~  135 (302)
                      +.+..+..........+..|.+.++.|.+..+.  ++..+...++..+++++.|+++||+|||+.+..+.++..++.+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~   81 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL   81 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence            445566667777778888898999888766655  899999999999999999999999999999999999999999999


Q ss_pred             hhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhH
Q 022133          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (302)
Q Consensus       136 ~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~  215 (302)
                      .+.++++.+++.|++.|++.+...+....++.|++|+++|++.+++.+....+|..++|.+++.+.+..+ |++.+++.+
T Consensus        82 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (352)
T cd06174          82 AFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILA  160 (352)
T ss_pred             HHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHH
Confidence            8889999999999999999999999999999999999999999999999999999999999999988877 899998877


Q ss_pred             HHHHHHHHHhhccC
Q 022133          216 VPAAILCLAMVFCA  229 (302)
Q Consensus       216 ~~~~~~~~~~~~~p  229 (302)
                      +..++..+...+++
T Consensus       161 ~~~~~~~~~~~~~~  174 (352)
T cd06174         161 ILGLLLALLLLFLL  174 (352)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77666555444443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.77  E-value=2.8e-17  Score=144.03  Aligned_cols=172  Identities=15%  Similarity=0.123  Sum_probs=136.8

Q ss_pred             HHHHHHHhhhhccchhhhhh-hhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH-HHHHHHHHHHHHH
Q 022133           58 LSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-LCALPMIIGASIS  135 (302)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~-~~~~~~~i~~~~~  135 (302)
                      +..++.+...+...+.+|.+ .+++|.+..+.  |++.+++.++..+.+++.|.++||+|||+.++ .+.++.+++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMI--GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence            34566666677777888865 56788876655  89999999999999999999999999888755 4556666677788


Q ss_pred             hhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchh--HhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHH
Q 022133          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY--GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (302)
Q Consensus       136 ~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~  213 (302)
                      +++++++.+++.|++.|.+.+...+....+..|+.|++.|+.+  .+....+..+|..++|.+++.+.+..+ ||+.|++
T Consensus        82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~~  160 (375)
T TIGR00899        82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFLT  160 (375)
T ss_pred             HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHHH
Confidence            8889999888999999888777778888888999888777754  577777888999999999999888777 9999998


Q ss_pred             hHHHHHHHHHH-hhccCCCh
Q 022133          214 SIVPAAILCLA-MVFCAESP  232 (302)
Q Consensus       214 ~~~~~~~~~~~-~~~~pe~~  232 (302)
                      .+++.++..+. ++++||.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~  180 (375)
T TIGR00899       161 AALAFVLCGVLVWLFLPSYP  180 (375)
T ss_pred             HHHHHHHHHHHHHHhCCCcc
Confidence            87766655444 45578864

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.77  E-value=1.5e-17  Score=150.31  Aligned_cols=177  Identities=15%  Similarity=0.167  Sum_probs=139.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhccchhhh-hhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHH
Q 022133           50 FPHVLVATLSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALP  127 (302)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grr~~~~~~~~~  127 (302)
                      ++.+..+.+..+...+..+....+++ ++.+++|++.++.  +++.+.+.....+..+++|+++|| +|||++++++.++
T Consensus        13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a--~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~   90 (489)
T PRK10207         13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQA--FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIV   90 (489)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHH
Confidence            34455555555555555555555544 4456788876665  688888888888888999999999 9999999999999


Q ss_pred             HHHHHHHHhhcchhHH-HHHHHHHHhhhhcchhhhHHHHhhhcCCCCc--cchhHhHHHHHHHHHHHHHHHHhhcccccC
Q 022133          128 MIIGASISATTRNLIG-MLLGRFVVGTGMGLGPTVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (302)
Q Consensus       128 ~~i~~~~~~~~~~~~~-~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  204 (302)
                      .+++.+.++++.+... ++++|.++|++.|...+...++++|++|+++  |+.+.+++..+.++|.+++|.+++++.+..
T Consensus        91 ~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~  170 (489)
T PRK10207         91 LAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF  170 (489)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999888766443 5578999999999999999999999999874  577899999999999999999999999988


Q ss_pred             cchHHHHHHhHHHHHHHHHHhhccC
Q 022133          205 GWWRICFWVSIVPAAILCLAMVFCA  229 (302)
Q Consensus       205 g~w~~~~~~~~~~~~~~~~~~~~~p  229 (302)
                      | ||+.|++..+..+.+++.+.+.+
T Consensus       171 g-w~~~F~i~~i~~~~~~~~~~~~~  194 (489)
T PRK10207        171 G-YSVTYNLCGAGLIIALLVYFACR  194 (489)
T ss_pred             C-hHHHHHHHHHHHHHHHHHHHHcc
Confidence            8 99999886554444444444433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.77  E-value=2e-17  Score=146.42  Aligned_cols=170  Identities=16%  Similarity=0.124  Sum_probs=141.2

Q ss_pred             HHHHHHHhhhhccchhhhh-hhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 022133           58 LSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (302)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~  136 (302)
                      ...++.....+.+.++++. +.+++|++....  |++.+...++..+.+++.|+++||+|||++++.+.++.+++.+.+.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~   94 (400)
T PRK11646         17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMV--GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA   94 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            4444444455555666664 457778766554  8999999999999999999999999999999999999999999998


Q ss_pred             hcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHH
Q 022133          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (302)
Q Consensus       137 ~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~  216 (302)
                      +.++++.+++.|++.|++.+...+...+++.|++|+++|++++++......+|..++|.+++.+. ..+ |++.|++.++
T Consensus        95 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~~~  172 (400)
T PRK11646         95 IAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATGAV  172 (400)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHHH
Confidence            88999999999999999998888888899999999999999999999999999999999999988 556 9999998766


Q ss_pred             HHHHHH-HHhhccCCC
Q 022133          217 PAAILC-LAMVFCAES  231 (302)
Q Consensus       217 ~~~~~~-~~~~~~pe~  231 (302)
                      ..++.. +..++.||.
T Consensus       173 ~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        173 LFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHHHHHhCCcc
Confidence            655543 334556653

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.77  E-value=4.3e-17  Score=143.45  Aligned_cols=170  Identities=25%  Similarity=0.294  Sum_probs=129.0

Q ss_pred             HHHhhhhccchhhhhhhhhcccCCcchhhHHHHHH-----HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 022133           62 LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSM-----CLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (302)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~  136 (302)
                      ...++.+.++...+.+.+++..+.++...+...+.     ..++..+++++.|+++||+|||+++..+.++..++.++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~   83 (394)
T TIGR00883         4 VEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            34455555666666666665432222222333332     2333457899999999999999999999999999999999


Q ss_pred             hcchhH--------HHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccc-------
Q 022133          137 TTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-------  201 (302)
Q Consensus       137 ~~~~~~--------~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~-------  201 (302)
                      +.+++.        .+++.|+++|++.+...+....++.|++|+++|++..++...+..+|.++++.++..+.       
T Consensus        84 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~  163 (394)
T TIGR00883        84 LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDA  163 (394)
T ss_pred             hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            888764        47888999999999999999999999999999999999999999999999988776543       


Q ss_pred             -ccCcchHHHHHHhHHHHHHHHHHhhccCCCh
Q 022133          202 -EIAGWWRICFWVSIVPAAILCLAMVFCAESP  232 (302)
Q Consensus       202 -~~~g~w~~~~~~~~~~~~~~~~~~~~~pe~~  232 (302)
                       +..+ ||+.|++.++..++..+.....||++
T Consensus       164 ~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~  194 (394)
T TIGR00883       164 LLEWG-WRIPFLVSAVLVLIGLYLRRNLEETP  194 (394)
T ss_pred             hhccc-hHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence             2345 99999887777666665555667764

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.76  E-value=1.9e-17  Score=149.35  Aligned_cols=172  Identities=15%  Similarity=0.159  Sum_probs=144.0

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhhhhh---cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESISLD---LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPM  128 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grr~~~~~~~~~~  128 (302)
                      +..+.+..+...+..+...+.+|.+..+   +|++..+.  +++.+.+.++..++++++|+++|| +|||+++.++.++.
T Consensus        12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~a--g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~   89 (475)
T TIGR00924        12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQA--FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL   89 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence            4445555666666666667777777554   67766555  899999999999999999999999 89999999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCc---cchhHhHHHHHHHHHHHHHHHHhhcccccCc
Q 022133          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV---RGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (302)
Q Consensus       129 ~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~---R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  205 (302)
                      +++.++++++++...+++++++.|++.|...+...++++|++|+++   |+.+.+++..+.++|.+++|.+++.+.+..+
T Consensus        90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g  169 (475)
T TIGR00924        90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG  169 (475)
T ss_pred             HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999988888888889999999999998999999999998865   8889999999999999999999999988777


Q ss_pred             chHHHHHHhHHHHHHHHHHhhc
Q 022133          206 WWRICFWVSIVPAAILCLAMVF  227 (302)
Q Consensus       206 ~w~~~~~~~~~~~~~~~~~~~~  227 (302)
                       |++.|++.++..+++++.+++
T Consensus       170 -~~~~f~~~~~~~~~~~l~~~~  190 (475)
T TIGR00924       170 -YHVGFNLAAVGMVIGLLTFFA  190 (475)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHH
Confidence             999998877655555444444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00897 2A0118 polyol permease family

Probab=99.76  E-value=6.5e-17  Score=143.30  Aligned_cols=157  Identities=15%  Similarity=0.071  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 022133           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (302)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~  134 (302)
                      ...++.+......+...++++.+.+++|.+.++.  |++.+.+.++..+++++.|+++||+|||+++..+..+.+++.++
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~   94 (402)
T TIGR00897        17 WGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQS--ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAA   94 (402)
T ss_pred             HHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHh--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            3444444444444445556677778888877665  89999999999999999999999999999999999988887765


Q ss_pred             Hh---h-cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHH-HHHHHHhhcccccCcchHH
Q 022133          135 SA---T-TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL-MGSLLIGIPVKEIAGWWRI  209 (302)
Q Consensus       135 ~~---~-~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~g~w~~  209 (302)
                      +.   . .+++..+++.|++.|++.+...+.....+.+++|+++|++++|+++.+..+|. .++|.+++.+.+..| |+.
T Consensus        95 ~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g-~~~  173 (402)
T TIGR00897        95 FIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG-EMN  173 (402)
T ss_pred             HHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hHH
Confidence            42   3 35788888999999999887777777888999999999999999999999996 589999888887777 555


Q ss_pred             HHHHh
Q 022133          210 CFWVS  214 (302)
Q Consensus       210 ~~~~~  214 (302)
                      .++..
T Consensus       174 ~~~~~  178 (402)
T TIGR00897       174 TLWSA  178 (402)
T ss_pred             HHHHH
Confidence            55443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PTZ00207 hypothetical protein; Provisional

Probab=99.75  E-value=5.8e-17  Score=147.27  Aligned_cols=155  Identities=19%  Similarity=0.092  Sum_probs=121.3

Q ss_pred             hccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc------chh
Q 022133           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT------RNL  141 (302)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~------~~~  141 (302)
                      +.++.+.+.+.+++|++..+.  +++.++. ....+++++.|+++||+|||++++++.++.+++.++++++      +++
T Consensus        44 y~fsv~s~~L~~~lgls~~~l--~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~  120 (591)
T PTZ00207         44 YAFNLISGAMQARYNLTQRDL--STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSV  120 (591)
T ss_pred             HHHHHHHHHHHHHhCcCHHHH--HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcH
Confidence            345567788899999887765  6666653 3445677889999999999999999999999999988886      688


Q ss_pred             HHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHH-HHHHhhcccccCcchHHHHHHhHHHHHH
Q 022133          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMG-SLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (302)
Q Consensus       142 ~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~g~w~~~~~~~~~~~~~  220 (302)
                      +.+++.|++.|++.+...+.....+.++|| ++||.+.|+...+.++|+.+ +++..+++.  .+ |+..|++.++..++
T Consensus       121 ~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~-~~~~fl~l~vl~~v  196 (591)
T PTZ00207        121 VRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DN-TSAYFFFLMSFALV  196 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh-HHHHHHHHHHHHHH
Confidence            999999999999999888888899999997 77999999999999999875 565555544  23 67766665555444


Q ss_pred             -HHHHhhccC
Q 022133          221 -LCLAMVFCA  229 (302)
Q Consensus       221 -~~~~~~~~p  229 (302)
                       +++.+++++
T Consensus       197 v~ll~~~~vr  206 (591)
T PTZ00207        197 VGILAIVFMR  206 (591)
T ss_pred             HHHHHHhhee
Confidence             444444443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.75  E-value=4e-18  Score=151.81  Aligned_cols=170  Identities=19%  Similarity=0.139  Sum_probs=139.8

Q ss_pred             HHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh--
Q 022133           60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT--  137 (302)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~--  137 (302)
                      .++.........+.+|.+.++++.+..  ..|++.+...++..+++++.|+++||+|||+++..+.++.+++.+..+.  
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~  103 (417)
T PRK10489         26 RFISIFGLGLLGVAVPVQIQMMTGSTL--QVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNA  103 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHH
Confidence            444444555667778888888776544  4599999999999999999999999999999998888777766554432  


Q ss_pred             ---cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHh
Q 022133          138 ---TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (302)
Q Consensus       138 ---~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~  214 (302)
                         .++++.+++.|++.|++.+...+....++.|++|+++|+++.++......+|..+||.+++.+.+..+ |++.+++.
T Consensus       104 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~~~  182 (417)
T PRK10489        104 FLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYGLA  182 (417)
T ss_pred             HcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHHHH
Confidence               46778888999999999888888888999999999999999999999999999999999999887777 89999887


Q ss_pred             HHHHHHHHHHhhccCCCh
Q 022133          215 IVPAAILCLAMVFCAESP  232 (302)
Q Consensus       215 ~~~~~~~~~~~~~~pe~~  232 (302)
                      ++..++..+..+.+|+++
T Consensus       183 ~~~~~~~~~~~~~l~~~~  200 (417)
T PRK10489        183 AAGTFITLLPLLRLPALP  200 (417)
T ss_pred             HHHHHHHHHHHHhCCCCC
Confidence            777777666667777753

>TIGR00896 CynX cyanate transporter

Probab=99.73  E-value=9.3e-17  Score=139.94  Aligned_cols=148  Identities=18%  Similarity=0.246  Sum_probs=127.3

Q ss_pred             hccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 022133           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLG  147 (302)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  147 (302)
                      ....+.+|.+.+++|++.++.  +++.+++.++..+++++.|+++||+|||+++.++.++.+++.+.. ..++...+++.
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~   93 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVA--GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAG   93 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence            457788999999999987766  899999999999999999999999999999999998888877776 67888888999


Q ss_pred             HHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcc-hHHHHHHhHHHHH
Q 022133          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-WRICFWVSIVPAA  219 (302)
Q Consensus       148 r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~-w~~~~~~~~~~~~  219 (302)
                      |++.|++.+...+....++.|++| ++|+++.++++.+..+|..+++.+++.+.+..+. ||+.|.+.++..+
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL  165 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            999999999888788888899987 5799999999999999999999988887765433 8888876554433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1.5e-17  Score=139.80  Aligned_cols=150  Identities=15%  Similarity=0.145  Sum_probs=135.9

Q ss_pred             hhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcc
Q 022133           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGL  157 (302)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~  157 (302)
                      .++...+.++..+|++.+...+.+.+.+++.|.+.||+|+|..+++|++++..+++++++.++++.++++|.++|+|.+.
T Consensus        96 ~~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~  175 (464)
T KOG3764|consen   96 AEAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAF  175 (464)
T ss_pred             hhccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHH
Confidence            34444445556679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHhhhcCCCC-ccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhcc
Q 022133          158 GPTVAALYVTEVSPPF-VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC  228 (302)
Q Consensus       158 ~~~~~~~~~~e~~p~~-~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~  228 (302)
                      ..+...+++++.||.+ +|++++|+...+.++|..+||.+|+.+.+..| .+.+|++.++..++...+.+++
T Consensus       176 ~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  176 ADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             HHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHhe
Confidence            9999999999999986 47999999999999999999999999999999 7999999888887766666554

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.70  E-value=8.9e-16  Score=139.21  Aligned_cols=175  Identities=17%  Similarity=0.188  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh-----hHHHH-HHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRA-FQLCAL  126 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----Grr~~-~~~~~~  126 (302)
                      .....+..+..+......+..+|.+.++.|.+.++.  +.. +.....+ ++.+++|+++||+     |||+. ++.+.+
T Consensus        14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~i--g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i   89 (491)
T PRK11010         14 SAILLILGFASGLPLALTSGTLQAWMTVENIDLKTI--GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQL   89 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence            344555556667777778888898888888876665  544 3333333 6899999999999     99885 567777


Q ss_pred             HHHHHHHHHhhc---chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccc-
Q 022133          127 PMIIGASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-  202 (302)
Q Consensus       127 ~~~i~~~~~~~~---~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~-  202 (302)
                      +.+++...+++.   ++++.+.+.+++.+++.+...+...++..|++|+++|+++.++...+..+|.++++.++..+.+ 
T Consensus        90 ~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~  169 (491)
T PRK11010         90 LLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR  169 (491)
T ss_pred             HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            777776666654   4677888899999999998888999999999999999999999999999999999999998887 


Q ss_pred             cCcchHHHHHHhHHHHHHHHHHhhccCCCh
Q 022133          203 IAGWWRICFWVSIVPAAILCLAMVFCAESP  232 (302)
Q Consensus       203 ~~g~w~~~~~~~~~~~~~~~~~~~~~pe~~  232 (302)
                      ..| ||..|++.++..++..+..++.||++
T Consensus       170 ~~G-Wr~~f~i~a~l~ll~~l~~~~~~e~~  198 (491)
T PRK11010        170 YLG-WQGMYWLMAALLIPCIIATLLAPEPT  198 (491)
T ss_pred             ccC-HHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            456 99999998777777666666678863

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.70  E-value=3.5e-16  Score=155.91  Aligned_cols=161  Identities=9%  Similarity=-0.012  Sum_probs=126.0

Q ss_pred             hhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh---hcchhHHHHHHH
Q 022133           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA---TTRNLIGMLLGR  148 (302)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~r  148 (302)
                      ...+.+..+++.+.+....+++.+++.++.+++++++|+++||+|||++++++.++.+++.+++.   ..++++.++++|
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  110 (1146)
T PRK08633         31 LIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVT  110 (1146)
T ss_pred             HHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            33444555566665555568999999999999999999999999999999988876655554433   356789999999


Q ss_pred             HHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccccc--------CcchHHHHHHh-HHHHH
Q 022133          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI--------AGWWRICFWVS-IVPAA  219 (302)
Q Consensus       149 ~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~g~w~~~~~~~-~~~~~  219 (302)
                      ++.|++.+...+...+++.|++|+++|++++++...+..+|.++++++++++...        .++|.+.+.+. ....+
T Consensus       111 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (1146)
T PRK08633        111 FLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAV  190 (1146)
T ss_pred             HHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988765        23344444333 33334


Q ss_pred             HHHHHhhccCCCh
Q 022133          220 ILCLAMVFCAESP  232 (302)
Q Consensus       220 ~~~~~~~~~pe~~  232 (302)
                      ++++..+++||+|
T Consensus       191 ~~~~~~~~~~~~~  203 (1146)
T PRK08633        191 LGLIFAYRLPKVP  203 (1146)
T ss_pred             HHHHHHhcCcCCC
Confidence            4445556677764

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.70  E-value=2.6e-16  Score=133.88  Aligned_cols=181  Identities=20%  Similarity=0.142  Sum_probs=147.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 022133           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (302)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~  129 (302)
                      .+.+.+..++.....+.....++..+.+.+++|+|.++.  +++.++..+..++..++.|.+.||+|.|++..+++++..
T Consensus        13 ~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~--~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~   90 (417)
T COG2223          13 RRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQK--GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLL   90 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHH--HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHH
Confidence            334555555555555666677777888889999988877  899999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcch---hHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCc-
Q 022133          130 IGASISATTRN---LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-  205 (302)
Q Consensus       130 i~~~~~~~~~~---~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g-  205 (302)
                      +.++..+++.+   ++.+++++++.|++ |+.+.+...+++.+||++++|.++|++. ..++|..+..++++.+....+ 
T Consensus        91 IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~  168 (417)
T COG2223          91 IPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGF  168 (417)
T ss_pred             HHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhh
Confidence            99998888754   45999999999996 5566788899999999999999999999 888898888888888877776 


Q ss_pred             -chHHHHHHhHHHHHH-HHHHhhccCCChHH
Q 022133          206 -WWRICFWVSIVPAAI-LCLAMVFCAESPHW  234 (302)
Q Consensus       206 -~w~~~~~~~~~~~~~-~~~~~~~~pe~~~~  234 (302)
                       .|+....+..+..++ .+..++++.+.|..
T Consensus       169 ~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~  199 (417)
T COG2223         169 LAWRNVAGIYVVALAIAAVLAWLGMNDVPEH  199 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence             388887776666555 44555666666553

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.69  E-value=7e-16  Score=140.57  Aligned_cols=167  Identities=11%  Similarity=-0.005  Sum_probs=110.1

Q ss_pred             hhhhccchhhhhhhhhcccCCcchh----------hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 022133           65 YHLGVVNEPLESISLDLGFNGNTLA----------EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (302)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~  134 (302)
                      +..+....+.|.+.++.|++.+...          ......+..++.+++.++.++++||+|||+.++++.++.++++.+
T Consensus       302 ~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~  381 (502)
T TIGR00887       302 IAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFV  381 (502)
T ss_pred             HHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH
Confidence            3333455567777778887654210          001233344566778899999999999999998888777766655


Q ss_pred             Hhhcc----hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCc-----
Q 022133          135 SATTR----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-----  205 (302)
Q Consensus       135 ~~~~~----~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g-----  205 (302)
                      .++..    +...+...-+...++..+..+..+.+.+|.+|++.|+++.++.+....+|.+++|.+.+.+.+..+     
T Consensus       382 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  461 (502)
T TIGR00887       382 LGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGY  461 (502)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccc
Confidence            54321    111111111122222223345667888999999999999999999999999999999998876421     


Q ss_pred             ----chHHHHHHhHHHHHHHHHHhhccCCC
Q 022133          206 ----WWRICFWVSIVPAAILCLAMVFCAES  231 (302)
Q Consensus       206 ----~w~~~~~~~~~~~~~~~~~~~~~pe~  231 (302)
                          ++...|++.+++.+++.+..+++|||
T Consensus       462 ~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt  491 (502)
T TIGR00887       462 PTGIWMGHVLEIFALFMFLGILFTLLIPET  491 (502)
T ss_pred             cccccchHHHHHHHHHHHHHHHHheEeccC
Confidence                13455666666666665566778998

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.69  E-value=1.2e-15  Score=135.26  Aligned_cols=170  Identities=19%  Similarity=0.167  Sum_probs=137.3

Q ss_pred             HHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh-----hHHH-HHHHHHHHHHHH
Q 022133           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRR-AFQLCALPMIIG  131 (302)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----Grr~-~~~~~~~~~~i~  131 (302)
                      ..++.++...+.....+|.+.++.|++.++.  |++..+...  .+..+++|+++||+     |||+ .++++.++.+++
T Consensus         6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~i--g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          6 LLGFASGLPLALTSGTLQAWMTVEGLDIQTI--GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            4456667777778889999999999988877  777655554  58999999999999     7765 678888888777


Q ss_pred             HHHHhhc---chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC-cch
Q 022133          132 ASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA-GWW  207 (302)
Q Consensus       132 ~~~~~~~---~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~w  207 (302)
                      ....++.   .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|..+++.++..+.+.. | |
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g-w  160 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG-W  160 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC-H
Confidence            7776665   346667777777888888888899999999999999999999999999999999999888887754 6 9


Q ss_pred             HHHHHHhHHHHHHHHHHhhccCCCh
Q 022133          208 RICFWVSIVPAAILCLAMVFCAESP  232 (302)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~pe~~  232 (302)
                      |..|++.++..++..+..++.||++
T Consensus       161 ~~~f~i~a~~~l~~~l~~~~~~e~~  185 (402)
T PRK11902        161 GNTYLLMAGLMLAGALTTLWAPEPE  185 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            9999987777666655566677763

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.68  E-value=7.1e-16  Score=153.50  Aligned_cols=141  Identities=15%  Similarity=0.089  Sum_probs=116.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH---HHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHh
Q 022133           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL---PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYV  166 (302)
Q Consensus        90 ~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~  166 (302)
                      .++..+++.+.++++++++|+++||+|||+++.....   +.++..+.....++++.++++|+++|++.+...+...+++
T Consensus        54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l  133 (1140)
T PRK06814         54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSIL  133 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhh
Confidence            4778889999999999999999999999997643222   2222222223347899999999999999999999999999


Q ss_pred             hhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhccCCC
Q 022133          167 TEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (302)
Q Consensus       167 ~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~pe~  231 (302)
                      .+++|+++|++++|+.+++..+|.++||.+++++....+ |++.|+..++..++++++.+++|++
T Consensus       134 ~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  197 (1140)
T PRK06814        134 PDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-FVILVALLMGIAVLGWLASLFIPKT  197 (1140)
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999999999999999999988877 8888866666666666666777765

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.68  E-value=1.4e-15  Score=138.18  Aligned_cols=167  Identities=16%  Similarity=0.155  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhh-hhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMII  130 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grr~~~~~~~~~~~i  130 (302)
                      +..+.+..+......+.+..+++.+ .+++|++..+.  +++.+.+........+++|+++|| +|||+.++++.++.++
T Consensus        23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a--~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~i  100 (500)
T PRK09584         23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADS--ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAI  100 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            3444455555555555555555554 47788876655  566666665555666789999999 5999999999999999


Q ss_pred             HHHHHhhcc-hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCc--cchhHhHHHHHHHHHHHHHHHHhhcccccCcch
Q 022133          131 GASISATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (302)
Q Consensus       131 ~~~~~~~~~-~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w  207 (302)
                      +..++++++ +...+.+.+++.|++.|...+...+++.|++|+++  |..+.++++.+.++|.+++|.+++++.+..| |
T Consensus       101 g~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~  179 (500)
T PRK09584        101 GYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-W  179 (500)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-H
Confidence            988888764 45667788999999999888888899999998754  4457888889999999999999999988888 9


Q ss_pred             HHHHHHhHHHHHHHH
Q 022133          208 RICFWVSIVPAAILC  222 (302)
Q Consensus       208 ~~~~~~~~~~~~~~~  222 (302)
                      |+.|++.++..++++
T Consensus       180 ~~~F~i~~i~~~i~~  194 (500)
T PRK09584        180 SVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998765444433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.68  E-value=2.8e-15  Score=131.98  Aligned_cols=164  Identities=12%  Similarity=0.084  Sum_probs=125.1

Q ss_pred             HHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHH----HHHHHHHHHHHHHHHHH
Q 022133           60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR----RAFQLCALPMIIGASIS  135 (302)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr----~~~~~~~~~~~i~~~~~  135 (302)
                      .+......+.+.+++|.+.+++|.+..+.  |++.+++.++..++++++|+++||+|||    +.+.++..+.  .....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~i--G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~   88 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETI--GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFW   88 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHH--HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHH
Confidence            44444556778889999999988876655  9999999999999999999999999984    3332222221  22233


Q ss_pred             hhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhH
Q 022133          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (302)
Q Consensus       136 ~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~  215 (302)
                      ...++++.+++.|++.|++.+...+...++..++  .++|+++.+.......+|..++|.+++.+.+..| ||..|++.+
T Consensus        89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~~  165 (382)
T PRK11128         89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWILT  165 (382)
T ss_pred             HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHH
Confidence            3457888888999999999888888877777776  4568888888888889999999999999998888 999998776


Q ss_pred             HHHHHHHHHhhccCC
Q 022133          216 VPAAILCLAMVFCAE  230 (302)
Q Consensus       216 ~~~~~~~~~~~~~pe  230 (302)
                      +..++.++..++.||
T Consensus       166 ~~~~~~~~~~~~~~~  180 (382)
T PRK11128        166 AGVASMLLGQLLRPT  180 (382)
T ss_pred             HHHHHHHHHHHccCC
Confidence            655544444444454

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.68  E-value=2.7e-15  Score=133.11  Aligned_cols=159  Identities=23%  Similarity=0.190  Sum_probs=130.1

Q ss_pred             ccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 022133           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (302)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r  148 (302)
                      ....+.|.+.++.|.+....  +...+...++.+++.++.|+++||+|||+.+..+.+..+++.+...+.++...+.+..
T Consensus       238 ~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (406)
T PRK11551        238 FLLNWLPSLLVGQGLSRSQA--GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAG  315 (406)
T ss_pred             HHHHHHHHHHHhCCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            34456777777788776655  7888999999999999999999999999999887777777766666677777777777


Q ss_pred             HHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhcc
Q 022133          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC  228 (302)
Q Consensus       149 ~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~  228 (302)
                      ++.|++.++..+....++.|.+|+++|+++.|+.+....+|.+++|.+++.+.+..+.|...++......+++.+..+++
T Consensus       316 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        316 FAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888788888899999999999999999999999999999999999998876657777777666666655555544


Q ss_pred             C
Q 022133          229 A  229 (302)
Q Consensus       229 p  229 (302)
                      .
T Consensus       396 ~  396 (406)
T PRK11551        396 V  396 (406)
T ss_pred             h
Confidence            3

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.67  E-value=3.1e-15  Score=131.69  Aligned_cols=159  Identities=11%  Similarity=0.005  Sum_probs=123.9

Q ss_pred             HHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHHHH-H
Q 022133           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL-PMIIGA-S  133 (302)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~-~~~i~~-~  133 (302)
                      +.+..+......+...|++|.+.+++|.+..+.  |++.+++.++..++++++|+++||+||+........ ..++.. .
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~i--g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~   86 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMI--GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAA   86 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            445555656666778899999999999876665  899999999999999999999999998543322211 111111 2


Q ss_pred             HHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHH
Q 022133          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (302)
Q Consensus       134 ~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~  213 (302)
                      ....+++++.+++.|.+.|.+.+...+...++..++  .++|++..+....+.++|.+++|.+++.+.+..| ||..|++
T Consensus        87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~f~~  163 (382)
T TIGR00902        87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNILAI  163 (382)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHH
Confidence            334568899999999999998888888888887664  5778999999999999999999999999999888 9999887


Q ss_pred             hHHHHH
Q 022133          214 SIVPAA  219 (302)
Q Consensus       214 ~~~~~~  219 (302)
                      ..+..+
T Consensus       164 ~~~~~~  169 (382)
T TIGR00902       164 LTAGLA  169 (382)
T ss_pred             HHHHHH
Confidence            654433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.67  E-value=2.7e-15  Score=134.22  Aligned_cols=170  Identities=18%  Similarity=0.156  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMII  130 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-Grr~~~~~~~~~~~i  130 (302)
                      +..+.+..+...+..+....++|.+. +++|++..+.  +.+.+.+.....++++++|+++||+ |||++++++.++.++
T Consensus        11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a--~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l   88 (493)
T PRK15462         11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHA--YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI   88 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence            44444444555555555666666554 4568776655  7888888888899999999999999 999999999999988


Q ss_pred             HHHHHhhcc-hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCC--ccchhHhHHHHHHHHHHHHHHHHhhcccccCcch
Q 022133          131 GASISATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF--VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (302)
Q Consensus       131 ~~~~~~~~~-~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~--~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w  207 (302)
                      +.++++... +...+.++..+.+++.|...+...++++|++|++  +|.++.++...+..+|++++|.+.+++.+..| |
T Consensus        89 g~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w  167 (493)
T PRK15462         89 GHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-W  167 (493)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-h
Confidence            887665433 2233444444555666776677788999999986  69999999888888999999999999988888 9


Q ss_pred             HHHHHHhHHHHHHHHHHh
Q 022133          208 RICFWVSIVPAAILCLAM  225 (302)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~  225 (302)
                      ++.|.+.++..+++++.+
T Consensus       168 ~~~F~iaaigm~l~li~~  185 (493)
T PRK15462        168 AMGFGLAAVGMIAGLVIF  185 (493)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999988765545444443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.67  E-value=4.8e-15  Score=130.99  Aligned_cols=156  Identities=13%  Similarity=0.174  Sum_probs=123.9

Q ss_pred             chhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 022133           71 NEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (302)
Q Consensus        71 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~  149 (302)
                      ....|.+. +++|++..+.  +++.+...++.+++.++.|+++||+|||+.+..+.+..++........++.+.+++.++
T Consensus       236 ~~~~p~~l~~~~~~~~~~~--g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  313 (393)
T PRK15011        236 IINMPLFIINELHLPEKLA--GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQL  313 (393)
T ss_pred             HHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34555444 5577765544  77777777778889999999999999999888776665555544455667777778888


Q ss_pred             HHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhccC
Q 022133          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCA  229 (302)
Q Consensus       150 ~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~p  229 (302)
                      +.+++.+...+....+..|.+|. +|+++.++++....+|..+++.+++.+.+..+ |+..+++..++.+++++..++.|
T Consensus       314 l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  391 (393)
T PRK15011        314 LNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRIK  391 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhc
Confidence            88888877777777888999986 59999999988899999999999999988777 89999988888888887777776


Q ss_pred             C
Q 022133          230 E  230 (302)
Q Consensus       230 e  230 (302)
                      |
T Consensus       392 ~  392 (393)
T PRK15011        392 D  392 (393)
T ss_pred             C
Confidence            5

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.67  E-value=6.4e-16  Score=115.74  Aligned_cols=135  Identities=21%  Similarity=0.370  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCc
Q 022133           95 SMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV  174 (302)
Q Consensus        95 ~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~  174 (302)
                      +.+.++..++.++.|++.||+|||+.+..+..+..++.+.....++.+.+.+.+++.|++.+...+....++.|.+|+++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            44567788999999999999999999999999888888888888888889999999999999999999999999999999


Q ss_pred             cchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHh-hccCC
Q 022133          175 RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM-VFCAE  230 (302)
Q Consensus       175 R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~-~~~pe  230 (302)
                      |++..++.+....+|..+++.+.+.+.+..+ |++.+++.+...++..+.. ++.||
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999988777 8888888766666554444 44555

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.66  E-value=7.4e-15  Score=129.92  Aligned_cols=172  Identities=19%  Similarity=0.183  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHhhhhccchhhhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 022133           54 LVATLSSFLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (302)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~  132 (302)
                      +......++.........+++|.+.. ++|.+..+.  |++.+++.++..++++++|+++||+|||+.++.+....+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~   82 (396)
T TIGR00882         5 WMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDT--GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLF   82 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            33444455555555666777776654 578776655  899999999999999999999999999999988776655443


Q ss_pred             HHH---hhcc-----hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC
Q 022133          133 SIS---ATTR-----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (302)
Q Consensus       133 ~~~---~~~~-----~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  204 (302)
                      ...   ...+     .+..+++.+++.|++.+...+....+..+..  +.++...+.......+|..++|.+++.+.+. 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-  159 (396)
T TIGR00882        83 APFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI-  159 (396)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc-
Confidence            322   1121     2334566688888888888888777777753  3345566777777889999999999987654 


Q ss_pred             cchHHHHHHhHHHHHHHHHHhhc-cCCC
Q 022133          205 GWWRICFWVSIVPAAILCLAMVF-CAES  231 (302)
Q Consensus       205 g~w~~~~~~~~~~~~~~~~~~~~-~pe~  231 (302)
                      + |+..|++.++..++..+..++ .||+
T Consensus       160 ~-~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (396)
T TIGR00882       160 D-PQIVFWLGSGFALILMLLLMFAKPKA  186 (396)
T ss_pred             C-chHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            5 899998887776665554444 3443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.66  E-value=2.6e-15  Score=130.84  Aligned_cols=160  Identities=16%  Similarity=0.084  Sum_probs=124.6

Q ss_pred             hccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh-----hHHHHH-HHHHHHHHHHHHHHhhc---
Q 022133           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRAF-QLCALPMIIGASISATT---  138 (302)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----Grr~~~-~~~~~~~~i~~~~~~~~---  138 (302)
                      ..+++..|.+.+++|++.++.  |+..+. .+...+ .+++|+++||+     |||+.+ +.+.++.+++....++.   
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~--g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~   80 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTI--GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS   80 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHH--HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            345677888999999988765  666544 444444 89999999998     898874 56677777776666665   


Q ss_pred             chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcc-------hHHHH
Q 022133          139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-------WRICF  211 (302)
Q Consensus       139 ~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~-------w~~~~  211 (302)
                      .+.+.+.+..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+....+.       ||..|
T Consensus        81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f  160 (356)
T TIGR00901        81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIF  160 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHH
Confidence            34555666777888888888888899999999999999999999999999999999999887766552       89999


Q ss_pred             HHhHHHHHHHHHHhhc-cCCC
Q 022133          212 WVSIVPAAILCLAMVF-CAES  231 (302)
Q Consensus       212 ~~~~~~~~~~~~~~~~-~pe~  231 (302)
                      ++.++..++.++..++ .||+
T Consensus       161 ~i~ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       161 FWTALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHHHHHHHHhccCC
Confidence            9888777766655443 5664

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.64  E-value=2.4e-14  Score=121.34  Aligned_cols=149  Identities=21%  Similarity=0.255  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 022133           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (302)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~  131 (302)
                      .+..+....++.++......+..|.+.+.++++..+.  +.+..+++.|+.+.+++.|++.+|+|+|..++.|+.+++++
T Consensus        14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a--~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg   91 (422)
T COG0738          14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEA--SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVG   91 (422)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHH--HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            4556667778888888889999999999999887776  89999999999999999999999999999999999999999


Q ss_pred             HHHHh---hcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccc
Q 022133          132 ASISA---TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (302)
Q Consensus       132 ~~~~~---~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  202 (302)
                      ++++.   ...++..++++.++.|.|.+...+....+++.+.|++.-...+.+.+.++++|.+++|.+++.+..
T Consensus        92 ~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738          92 AALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            99885   457889999999999999999999999999999999888889999999999999999999998776

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.64  E-value=1.2e-14  Score=131.80  Aligned_cols=160  Identities=18%  Similarity=0.071  Sum_probs=112.5

Q ss_pred             ccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc---chhH-HH
Q 022133           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT---RNLI-GM  144 (302)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~---~~~~-~~  144 (302)
                      ....+.|.+.++.|.+....  ++......++.+++.++.++++||+|||+.++.+.++.+++.++++..   +... ..
T Consensus       289 ~~~~~~p~i~~~~g~~~~~~--~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~  366 (479)
T PRK10077        289 VVLYYAPEIFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA  366 (479)
T ss_pred             HHHHHHHHHHHHcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence            34456677878888776544  466666777888999999999999999999999999888887765532   1111 22


Q ss_pred             HHHHHHHhhhhcc-hhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcc------cccCcchHHHHHHhHHH
Q 022133          145 LLGRFVVGTGMGL-GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV------KEIAGWWRICFWVSIVP  217 (302)
Q Consensus       145 ~~~r~~~g~~~~~-~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~g~w~~~~~~~~~~  217 (302)
                      ..+.++.+.+.+. ..+..+.+++|.+|+++|++++|+.+....+|.++++.+.+.+      .+..+ |+..|++.++.
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~  445 (479)
T PRK10077        367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCM  445 (479)
T ss_pred             HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHH
Confidence            2333444444433 2356789999999999999999999988888888876555533      34555 66777776555


Q ss_pred             HHHHHH-HhhccCCC
Q 022133          218 AAILCL-AMVFCAES  231 (302)
Q Consensus       218 ~~~~~~-~~~~~pe~  231 (302)
                      ++++.+ .+++.||+
T Consensus       446 ~~~~~~~~~~~~~e~  460 (479)
T PRK10077        446 GVLAALFMWKFVPET  460 (479)
T ss_pred             HHHHHHHHHhccccC
Confidence            554444 44567887

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.63  E-value=3.7e-15  Score=130.32  Aligned_cols=148  Identities=18%  Similarity=0.094  Sum_probs=121.2

Q ss_pred             hhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchh--HHHHHHHH
Q 022133           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL--IGMLLGRF  149 (302)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~r~  149 (302)
                      ...+.+.++++.+.++.  +.+.+...++..+++++.|+++||+|||+.+.++.++.+++.+...+.++.  ..+++..+
T Consensus       226 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (377)
T TIGR00890       226 GLYKPYGQSLGLSDGFL--VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA  303 (377)
T ss_pred             HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            34455566777665444  788889999999999999999999999999999988888887776665532  33445677


Q ss_pred             HHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHH
Q 022133          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (302)
Q Consensus       150 ~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~  222 (302)
                      +.|++.+...+..+.++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..| |++.|++.+++.++++
T Consensus       304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHhc
Confidence            88888888877888899999999999999999999999999999999999988888 8999888766665543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.63  E-value=1.6e-14  Score=127.82  Aligned_cols=157  Identities=15%  Similarity=0.081  Sum_probs=128.3

Q ss_pred             cchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 022133           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (302)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~  149 (302)
                      ...+.+.+..+.|.+  ..  ++..+.+.++.+++.++.|++.||+|||+.+..+..+.+++.++....++...+++..+
T Consensus       235 ~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (399)
T PRK05122        235 IATFITLYYAARGWD--GA--ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAA  310 (399)
T ss_pred             HHHHHHHHHHHcccc--cc--hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            344555555555552  22  46667788888999999999999999999999888888888877777778777888899


Q ss_pred             HHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhccC
Q 022133          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCA  229 (302)
Q Consensus       150 ~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~p  229 (302)
                      +.|++.+..++.....+.|.+|++.|+++.++++....+|..+++.+.+.+.+..| |+..+++.+++.+++++..++++
T Consensus       311 l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  389 (399)
T PRK05122        311 LTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLLY  389 (399)
T ss_pred             HHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999998888888888899999999999999999999999999989898888777 89999888777777766666555


Q ss_pred             CC
Q 022133          230 ES  231 (302)
Q Consensus       230 e~  231 (302)
                      ++
T Consensus       390 ~~  391 (399)
T PRK05122        390 RR  391 (399)
T ss_pred             cc
Confidence            44

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.63  E-value=1.5e-14  Score=127.93  Aligned_cols=175  Identities=13%  Similarity=0.181  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHhhhhccchhhhhh-hhhcccCCcchhhHHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHH
Q 022133           54 LVATLSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLG-GAFIGSTLSGWIADGVGRRRAF-QLCALPMII  130 (302)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~Grr~~~-~~~~~~~~i  130 (302)
                      ....+..++.+.......+.++.+ .+++|.+.++.  |++.+...+ +..++.+++++ +||+|||+.+ +.+.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~   94 (393)
T PRK15011         18 TAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMV--GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVL   94 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHH
Confidence            344445666666666667777764 56788877665  888766544 55566656666 9999999875 455566667


Q ss_pred             HHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccc--hhHhHHHHHHHHHHHHHHHHhhcccccCcchH
Q 022133          131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRG--TYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (302)
Q Consensus       131 ~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~  208 (302)
                      ++.+.+++++++.+++.+.+.+...+...+....+..++.+++.|.  ...++.+.+.++|.+++|.+++.+.+..| ||
T Consensus        95 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~  173 (393)
T PRK15011         95 ACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FT  173 (393)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hH
Confidence            7777788888887766655554444566777778888887776563  34577888999999999999999988778 99


Q ss_pred             HHHHHhHHHHHHHH-HHhhccCCCh
Q 022133          209 ICFWVSIVPAAILC-LAMVFCAESP  232 (302)
Q Consensus       209 ~~~~~~~~~~~~~~-~~~~~~pe~~  232 (302)
                      ..|++.++..++.. +.++++||.+
T Consensus       174 ~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        174 VMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCccC
Confidence            99988776665544 4455678764

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.62  E-value=2.1e-14  Score=124.16  Aligned_cols=161  Identities=22%  Similarity=0.329  Sum_probs=138.4

Q ss_pred             hhhhccchhhhhhhhhc-ccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHH-HHHHHHHHHHHHHHHHhhcchhH
Q 022133           65 YHLGVVNEPLESISLDL-GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR-AFQLCALPMIIGASISATTRNLI  142 (302)
Q Consensus        65 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~-~~~~~~~~~~i~~~~~~~~~~~~  142 (302)
                      ........+.+.+.++. |.+..+.  ++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++..
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  266 (352)
T cd06174         189 FGYYGLLTYLPLYLQEVLGLSAAEA--GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLA  266 (352)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHH
Confidence            33344555666666654 6555444  88999999999999999999999999999 99999999999999888888888


Q ss_pred             HHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHH
Q 022133          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (302)
Q Consensus       143 ~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~  222 (302)
                      .+.+..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+ |+..+++.++..++..
T Consensus       267 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~i~~  345 (352)
T cd06174         267 LLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALALLAA  345 (352)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999999999999999999999999988777 8999998888877776


Q ss_pred             HHhhcc
Q 022133          223 LAMVFC  228 (302)
Q Consensus       223 ~~~~~~  228 (302)
                      +..+++
T Consensus       346 i~~~~~  351 (352)
T cd06174         346 LLLLLL  351 (352)
T ss_pred             HHheec
Confidence            665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.62  E-value=1.9e-14  Score=129.45  Aligned_cols=163  Identities=10%  Similarity=0.053  Sum_probs=125.4

Q ss_pred             HHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHH--HHHHHHHHHHH
Q 022133           59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG--VGRRRAFQL--CALPMIIGASI  134 (302)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~--~Grr~~~~~--~~~~~~i~~~~  134 (302)
                      ..++..........+++.+.++.|++..+.  +++.++..++.++++++.|+++||  +++|+...+  +.++.+++.++
T Consensus       249 ~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll  326 (455)
T TIGR00892       249 GNVIMFLGFFAPIIFLVPYAKDKGVDEYEA--AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLL  326 (455)
T ss_pred             HHHHHHHHccchHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444556677777778766555  888999999999999999999997  334433333  33333444455


Q ss_pred             HhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHh
Q 022133          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (302)
Q Consensus       135 ~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~  214 (302)
                      ....++++.+++.+++.|++.+...+....++.|.+|++++++.+++++....+|.+++|.+++.+.+..+.|+..|++.
T Consensus       327 ~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~  406 (455)
T TIGR00892       327 CALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYAS  406 (455)
T ss_pred             HHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHh
Confidence            56677888888899999999999988999999999999999999999999999999999999999988765588888887


Q ss_pred             HHHHHHHHH
Q 022133          215 IVPAAILCL  223 (302)
Q Consensus       215 ~~~~~~~~~  223 (302)
                      ++..+++.+
T Consensus       407 ~~~~li~~~  415 (455)
T TIGR00892       407 GSIVVSAGL  415 (455)
T ss_pred             hHHHHHHHH
Confidence            766655544

>TIGR00889 2A0110 nucleoside transporter

Probab=99.61  E-value=1.1e-14  Score=129.66  Aligned_cols=160  Identities=14%  Similarity=0.129  Sum_probs=125.7

Q ss_pred             hhhhhhhhhcccCCc------chhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc-c---hh
Q 022133           72 EPLESISLDLGFNGN------TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-R---NL  141 (302)
Q Consensus        72 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-~---~~  141 (302)
                      .+.+.+.++.|.+..      ....+...++..++.+++.++.|+++||+|||+++..+.++.+++..+.... +   ++
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~  308 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY  308 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            444555666664431      1233788888888999999999999999999999999999888877666553 2   23


Q ss_pred             HHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHH-HHHHHHHHHHHHHhhcccccCc-----chHHHHHHhH
Q 022133          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAG-----WWRICFWVSI  215 (302)
Q Consensus       142 ~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~g-----~w~~~~~~~~  215 (302)
                      ..+++.+++.|++.+...+....++.|++|++.|+++.++.+ ....+|.+++|.+++.+.+..+     +|+..|++.+
T Consensus       309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~  388 (418)
T TIGR00889       309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA  388 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence            556778999999998888888899999999999999999987 6788999999999999887643     2899888776


Q ss_pred             HHHHHH-HHHhhccCCC
Q 022133          216 VPAAIL-CLAMVFCAES  231 (302)
Q Consensus       216 ~~~~~~-~~~~~~~pe~  231 (302)
                      ++.+++ ++..++++|+
T Consensus       389 ~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       389 GYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHhCCc
Confidence            665554 4455667776

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09952 shikimate transporter; Provisional

Probab=99.61  E-value=2.9e-14  Score=127.74  Aligned_cols=160  Identities=16%  Similarity=0.127  Sum_probs=115.0

Q ss_pred             cchhhhhh-hhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh---c-chhHHH
Q 022133           70 VNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT---T-RNLIGM  144 (302)
Q Consensus        70 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~---~-~~~~~~  144 (302)
                      ...+.|.+ .+++|.+.+..  ..+.....+...++.+++|+++||+|||+.++.+.++.+++.+.+..   . ++...+
T Consensus       269 ~~~~~~~y~~~~~g~s~~~~--~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (438)
T PRK09952        269 VTAFALNYSTQNLGLPRELF--LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIV  346 (438)
T ss_pred             HHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence            44455544 34567665432  34444556667788899999999999999998887766554433322   2 234444


Q ss_pred             HHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhH-HHHHHHHHHHHHHHHhhcccccC-cchHHHHHHhHHHHHHHH
Q 022133          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIA-GWWRICFWVSIVPAAILC  222 (302)
Q Consensus       145 ~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~-g~w~~~~~~~~~~~~~~~  222 (302)
                      ++..++.+++.+...+..++++.|.+|++.|+++.++ ++.+..+|+.++|.+.+.+.+.. +.|...+.+.++.++++.
T Consensus       347 ~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~  426 (438)
T PRK09952        347 FFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISA  426 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            4556667788887788888999999999999999998 55666789999999999987744 347888888777777777


Q ss_pred             HHhhccCCC
Q 022133          223 LAMVFCAES  231 (302)
Q Consensus       223 ~~~~~~pe~  231 (302)
                      +..+.++|+
T Consensus       427 v~~~~~~~~  435 (438)
T PRK09952        427 MTALLMKDN  435 (438)
T ss_pred             HHHHHcccc
Confidence            777777775

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.61  E-value=1.9e-14  Score=130.03  Aligned_cols=172  Identities=16%  Similarity=0.133  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~  131 (302)
                      ++...+..++..........++|.+. +++|++..+.  ++..+...++.+++.+++|+++||+|||+.++....+..++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~  337 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDA--INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALII  337 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            34444444444444444566777655 5578876655  78888899999999999999999999998776654444333


Q ss_pred             HH--HHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHH-HHHHHHHHhhcccc------
Q 022133          132 AS--ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKE------  202 (302)
Q Consensus       132 ~~--~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-g~~~~~~~~~~~~~------  202 (302)
                      ..  ......+...+.+.+++.|++..+........+.|.+|++.||++.|+.+....+ |.+++|.+.|.+.+      
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~  417 (467)
T PRK09556        338 FTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGT  417 (467)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccc
Confidence            22  2223345555667777888654444334446777999999999999999888776 77899999999888      


Q ss_pred             ------cCcchHHHHHHhHHHHHHHHHHhhc
Q 022133          203 ------IAGWWRICFWVSIVPAAILCLAMVF  227 (302)
Q Consensus       203 ------~~g~w~~~~~~~~~~~~~~~~~~~~  227 (302)
                            ..+ |+..|++..+..+++.+..++
T Consensus       418 ~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        418 PIFGYTLTG-WAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             ccccccccC-hHHHHHHHHHHHHHHHHHHHH
Confidence                  455 899998876776666555544

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.60  E-value=1.2e-14  Score=129.63  Aligned_cols=140  Identities=12%  Similarity=0.028  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhc
Q 022133           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (302)
Q Consensus        90 ~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~  169 (302)
                      .|.+.++..++.+++.+++|+++||+|||+.+..+.++.+++.++.++.++.+.+++.+++.|++.+...+....++.|.
T Consensus       264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  343 (420)
T PRK09528        264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLN  343 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37888888889999999999999999999999999998888888888888888888889999998888777778899999


Q ss_pred             CCCCccchhHhH-HHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHH-HhhccCC
Q 022133          170 SPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL-AMVFCAE  230 (302)
Q Consensus       170 ~p~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~-~~~~~pe  230 (302)
                      +|++.|++..+. ++....+|.++++.+.+.+.+..| |+..|.+.++..++..+ .+++.++
T Consensus       344 ~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        344 FDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             cCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999988766 677888999999999999999888 89999886666555443 3344444

>TIGR00898 2A0119 cation transport protein

Probab=99.60  E-value=2.6e-14  Score=130.48  Aligned_cols=137  Identities=14%  Similarity=0.016  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchh--HHHHHHHHHHhhhhcchhhhHHHHhhhc
Q 022133           92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL--IGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (302)
Q Consensus        92 ~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~r~~~g~~~~~~~~~~~~~~~e~  169 (302)
                      +......++.+++.++.++++||+|||+.+.++.++.++++++..+.++.  ...++..++.+++.+..++..+.+.+|.
T Consensus       359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  438 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL  438 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34445566777899999999999999999999999888888777765543  4445556677777777888889999999


Q ss_pred             CCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhccCCC
Q 022133          170 SPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (302)
Q Consensus       170 ~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~pe~  231 (302)
                      +|++.|++++|+.+....+|.+++|.+.+ +.+ .+ +...+++.+...+++.+..+++||+
T Consensus       439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~lpet  497 (505)
T TIGR00898       439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KW-LFLPLVLFGGLALLAGILTLFLPET  497 (505)
T ss_pred             ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HH-HhhHHHHHHHHHHHHHHHHHcCcCC
Confidence            99999999999999999999999999988 433 33 4566666666666666777788998

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.59  E-value=2.4e-14  Score=129.13  Aligned_cols=172  Identities=15%  Similarity=0.013  Sum_probs=123.7

Q ss_pred             HHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 022133           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (302)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~  136 (302)
                      .+..+...........+.|.+.++.|++....  ++......++.+++.++.|+++||+|||+.+.++.++.+++.++.+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  367 (481)
T TIGR00879       290 VLQWFQQFTGINAIMYYSPTIFENAGVSTDHA--FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG  367 (481)
T ss_pred             HHHHHHHHhCCeehHHHHHHHHHHcCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            33333333334445667788888888877544  6788888888999999999999999999999988887777766655


Q ss_pred             h-----cc------hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCc
Q 022133          137 T-----TR------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (302)
Q Consensus       137 ~-----~~------~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  205 (302)
                      +     .+      +...+....++.+.......+....++.|.+|++.|++++++.+....+|.+++|.+.+.+.+..+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~  447 (481)
T TIGR00879       368 ILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIG  447 (481)
T ss_pred             HHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            2     11      222222223332222223345666788999999999999999999999999999999998888777


Q ss_pred             chHHHHHHhHHHHHHHHHHh-hccCCC
Q 022133          206 WWRICFWVSIVPAAILCLAM-VFCAES  231 (302)
Q Consensus       206 ~w~~~~~~~~~~~~~~~~~~-~~~pe~  231 (302)
                       |++.|++.+++++++.+.. ++.||+
T Consensus       448 -~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       448 -VGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             -ccceehhHHHHHHHHHHHHheecccC
Confidence             8888887766666655544 556776

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK12382 putative transporter; Provisional

Probab=99.59  E-value=4.5e-14  Score=124.71  Aligned_cols=152  Identities=16%  Similarity=0.150  Sum_probs=126.4

Q ss_pred             cchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 022133           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (302)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~  149 (302)
                      ...+.+.+.++.+.+  +.  ++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++...+++..+
T Consensus       235 ~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (392)
T PRK12382        235 IGTFVSLYFASKGWA--MA--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAA  310 (392)
T ss_pred             HHHHHHHHHHhcCCc--hh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            444555555665553  22  46666777888899999999999999999999998888888877777788777788899


Q ss_pred             HHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhh
Q 022133          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV  226 (302)
Q Consensus       150 ~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~  226 (302)
                      +.|++.+...+.....+.|.+|+++||++.++++....+|..++|.+.+.+.+..| |+..|++.+++.+++.+..+
T Consensus       311 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        311 LTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHH
Confidence            99999988888888889999999999999999999999999999999999998888 89999988777777655544

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.58  E-value=6e-14  Score=125.13  Aligned_cols=166  Identities=20%  Similarity=0.209  Sum_probs=107.4

Q ss_pred             HHHHHHHhhhhccchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 022133           58 LSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (302)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~  136 (302)
                      ...++.....+...++++.+..+ +|++..+.  |++.+++.++..++++++|+++||+|||++++++..+.+++.....
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~   94 (420)
T PRK09528         17 LFFFFFFFIWSSWFSFFPIWLHDINGLSGTDT--GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFF   94 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            34444444445566677666554 78876655  9999999999999999999999999999999887665544432211


Q ss_pred             ---hcch-----hHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchH
Q 022133          137 ---TTRN-----LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (302)
Q Consensus       137 ---~~~~-----~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~  208 (302)
                         ..+.     +...+++.++.|.+.....+....+..+ . .++++...+.......+|..++|.+++.+.+. + |+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~-~~  170 (420)
T PRK09528         95 IYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI-N-PQ  170 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc-C-ch
Confidence               1111     1112223333333333333333333322 2 34567788888888899999999999988764 4 89


Q ss_pred             HHHHHhHHHHHHHHHHhhccC
Q 022133          209 ICFWVSIVPAAILCLAMVFCA  229 (302)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~p  229 (302)
                      ..|++.++..++.++..++.+
T Consensus       171 ~~f~~~~~~~~~~~~~~~~~~  191 (420)
T PRK09528        171 INFWLGSGSALILLVLLFFAK  191 (420)
T ss_pred             HhHHHHHHHHHHHHHHHhccc
Confidence            999887777666655555543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.58  E-value=3.3e-14  Score=125.04  Aligned_cols=162  Identities=18%  Similarity=0.124  Sum_probs=118.4

Q ss_pred             HHHHHHHHHhhhhccchhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH--
Q 022133           56 ATLSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA--  132 (302)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~--  132 (302)
                      .....+...........+.|.+. +++|.+.++.  +...+...++..++.++.|+++||+|||+.+..+..+..+..  
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~  301 (394)
T TIGR00883       224 GLGLVIATTTTFYLITTYLPTYLTQTLGLSANSA--LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVP  301 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence            33333444444444556667665 5567766554  788888889999999999999999999998775554443322  


Q ss_pred             HHHhh--cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhH-HHHHHHHHHHHHHHHhhcccccCcchHH
Q 022133          133 SISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (302)
Q Consensus       133 ~~~~~--~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~g~w~~  209 (302)
                      +....  .++...+++..++.|++.+...+....++.|.+|++.|+++.++ ++.+..+|..++|.+++.+.+..|.|+.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~  381 (394)
T TIGR00883       302 LLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYA  381 (394)
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchh
Confidence            12222  24556666778888988888888999999999999999999998 5677788999999999999888775777


Q ss_pred             HHHHhHHHHH
Q 022133          210 CFWVSIVPAA  219 (302)
Q Consensus       210 ~~~~~~~~~~  219 (302)
                      .+++.++..+
T Consensus       382 ~~~~~~~~~l  391 (394)
T TIGR00883       382 IGYYLAALAL  391 (394)
T ss_pred             HHHHHHHHHH
Confidence            7666554433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.57  E-value=1.5e-13  Score=120.49  Aligned_cols=154  Identities=18%  Similarity=0.276  Sum_probs=122.4

Q ss_pred             hhhhh-hhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 022133           73 PLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV  151 (302)
Q Consensus        73 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~  151 (302)
                      ..|.+ .+++|.+..+.  +++.+...+...++.++.|+++||+|||+.+.++.++..+..+.....++.+.+++.+++.
T Consensus       221 ~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (375)
T TIGR00899       221 NMPLLIIHELGLPDKLA--GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLN  298 (375)
T ss_pred             hhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34443 45677765544  6777766667778889999999999999998888776666555555566777777888899


Q ss_pred             hhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhccCC
Q 022133          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE  230 (302)
Q Consensus       152 g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~pe  230 (302)
                      |++.+...+....++.|..|.+ |+++.++++....+|..++|.+++.+.+..| |+..|++.++..+++.+...+++|
T Consensus       299 g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       299 AIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHheecC
Confidence            9988888888888999998865 6799999999889999999999999988877 899999888887777777666653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.56  E-value=2.6e-13  Score=119.96  Aligned_cols=163  Identities=17%  Similarity=0.148  Sum_probs=123.6

Q ss_pred             hhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcc-hhHHH
Q 022133           66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR-NLIGM  144 (302)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~~  144 (302)
                      .......+.|.+..+.|.+..+.  +...+.+.++.+++.++.|++.||+|||+.++++..+.+++.++....+ +...+
T Consensus       220 ~~~~~~~~lp~~l~~~g~s~~~a--g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  297 (393)
T PRK09705        220 GYASLIAWLPAFYIEIGASAQYS--GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL  297 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCChhhh--hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence            33345556777777778776655  8889999999999999999999999999999888877777766554333 32222


Q ss_pred             HHHHHHHhhhhcchhhhHHHHhhhcCC-CCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHH
Q 022133          145 LLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (302)
Q Consensus       145 ~~~r~~~g~~~~~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~  223 (302)
                        ..++.|++.+...+.......+.++ +++|++..++.+....++..++|.+.+++.+..|+|...|++..+.++...+
T Consensus       298 --~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (393)
T PRK09705        298 --WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMI  375 (393)
T ss_pred             --HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence              2345688888877777767677775 6789999999999999999999999999999887788888887666555444


Q ss_pred             -HhhccCCCh
Q 022133          224 -AMVFCAESP  232 (302)
Q Consensus       224 -~~~~~pe~~  232 (302)
                       ...+.||++
T Consensus       376 ~~~~~~~~~~  385 (393)
T PRK09705        376 ITLRFAPARF  385 (393)
T ss_pred             HHHHhccccc
Confidence             356678874

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.55  E-value=1.7e-13  Score=120.40  Aligned_cols=169  Identities=18%  Similarity=0.138  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHhhhhccchhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHH--HHHH------H
Q 022133           54 LVATLSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR--AFQL------C  124 (302)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~--~~~~------~  124 (302)
                      ....+..++..........+.|.+. +++|.+..+.  +++.+...++..++.++.|+++||+|||+  ....      +
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (399)
T TIGR00893       218 WGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEA--GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIA  295 (399)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence            3334444444444455556666655 4467655444  78888889999999999999999999996  1111      1


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC
Q 022133          125 ALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (302)
Q Consensus       125 ~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  204 (302)
                      .++..+........++....+....+.+++.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~  374 (399)
T TIGR00893       296 GLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT  374 (399)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC
Confidence            11111111111122333433333444444444 67888999999999999999999999999999999999999999877


Q ss_pred             cchHHHHHHhHHHHHHHHHHh
Q 022133          205 GWWRICFWVSIVPAAILCLAM  225 (302)
Q Consensus       205 g~w~~~~~~~~~~~~~~~~~~  225 (302)
                      +.|+..+++.++..+++.+..
T Consensus       375 g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       375 GSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             CchhHHHHHHHHHHHHHHHHH
Confidence            657888887766666655444

>PRK03699 putative transporter; Provisional

Probab=99.55  E-value=2.2e-13  Score=120.53  Aligned_cols=170  Identities=12%  Similarity=0.064  Sum_probs=130.5

Q ss_pred             HHHHHHHhhhhccchhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 022133           58 LSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (302)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~  136 (302)
                      +..++.......+..++|.+. +++|++..+.  +.+.+.+.++.+++.++.|+++||+|||+.+.....+.++...+..
T Consensus       212 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~  289 (394)
T PRK03699        212 IAALLYILAQLTFISWVPEYAQKKFGMSLEDA--GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFV  289 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHh--hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence            333333333334556777776 4568776655  7888999999999999999999999999999888777777666666


Q ss_pred             hcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHH
Q 022133          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (302)
Q Consensus       137 ~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~  216 (302)
                      ..++...+.+..++.|++.+..++...++..|..|. .++...+....+..+|..++|.+.+.+.+..| ++..+++.++
T Consensus       290 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~  367 (394)
T PRK03699        290 NTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANG  367 (394)
T ss_pred             HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHH
Confidence            677776677778888988888888877888887764 46778888888889999999999999998888 7888888777


Q ss_pred             HHHHHHHHhhccCCC
Q 022133          217 PAAILCLAMVFCAES  231 (302)
Q Consensus       217 ~~~~~~~~~~~~pe~  231 (302)
                      +.+++.+....+++.
T Consensus       368 ~~~~~~~~~~~~~~~  382 (394)
T PRK03699        368 LYAVVFVMCILLGFV  382 (394)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            766666655555543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.54  E-value=3.2e-17  Score=147.39  Aligned_cols=231  Identities=18%  Similarity=0.140  Sum_probs=136.1

Q ss_pred             CcchhhhhhhhcccCCCCCCCCccchhhhhhhhcCccc-cccCCCCcch--hHHHHHHHH-HHHHHHHhhhhccchhhhh
Q 022133            1 MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTE-VENTNPSWKL--SFPHVLVAT-LSSFLFGYHLGVVNEPLES   76 (302)
Q Consensus         1 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   76 (302)
                      +|||.+||++.+++.++++..+++..++ .++.++..+ +......++.  ..+.+.... +..+...........+.+.
T Consensus       200 ~~~~~~~A~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~  278 (451)
T PF00083_consen  200 SKGRDEEAEKVLRKLRGKEIEDEEIEEI-KAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPS  278 (451)
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccceeeeeccccccccccccccccccccccccccccccccccc
Confidence            4789999999999966543322222111 111111111 0011111111  111122222 2222222223345556677


Q ss_pred             hhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh--h---cch-----hHHHHH
Q 022133           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA--T---TRN-----LIGMLL  146 (302)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~--~---~~~-----~~~~~~  146 (302)
                      +.+..+.+.+ .   .......+...++.++..++.||+|||+.++.+.++.+++.+.++  .   .++     ...+ +
T Consensus       279 i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~  353 (451)
T PF00083_consen  279 IFENAGISNS-F---LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSI-V  353 (451)
T ss_pred             cccccccccc-c---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-e
Confidence            7777777665 2   223334445557777888999999999999999988887776664  1   111     1221 2


Q ss_pred             HHHHHhhhhc-chhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHh
Q 022133          147 GRFVVGTGMG-LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (302)
Q Consensus       147 ~r~~~g~~~~-~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~  225 (302)
                      +-.+...+.+ +..+..+.+.+|.+|++.|+++.++......++.++++.+...+.+..+.+.....+.++..+..++.+
T Consensus       354 ~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~  433 (451)
T PF00083_consen  354 FLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVY  433 (451)
T ss_pred             eeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhhee
Confidence            2222222222 334566788999999999999999988888899999998888877666533344444555555566777


Q ss_pred             hccCCChHHHHHhCCHHH
Q 022133          226 VFCAESPHWLYKKGRTAE  243 (302)
Q Consensus       226 ~~~pe~~~~~~~~~~~~~  243 (302)
                      +++|||      ++++.+
T Consensus       434 ~~lpET------~g~~l~  445 (451)
T PF00083_consen  434 FFLPET------KGKTLE  445 (451)
T ss_pred             EEEeeC------CCCCHH
Confidence            889999      777766

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.53  E-value=5e-13  Score=117.70  Aligned_cols=162  Identities=12%  Similarity=-0.003  Sum_probs=132.6

Q ss_pred             HHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 022133           60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR  139 (302)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~  139 (302)
                      .++..........+.|.+.++.|.+....  |...+...++.+++.++.+++.||+|+|+.+.++.++.++..+..++.+
T Consensus       214 ~~l~~~~~~~~~~~~~~~l~~~g~s~~~~--g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~  291 (382)
T TIGR00902       214 VCLIQGAHAAYYGFSAIYWQAAGISASAT--GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE  291 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh
Confidence            33333334444556677777788776655  8888888889999999999999999999999999999999998888899


Q ss_pred             hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHH-HHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHH
Q 022133          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA  218 (302)
Q Consensus       140 ~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~  218 (302)
                      +++.+++.+++.|++.+...+....++.+. |+++|+++.++++ ...++|..+++.++|.+.+..| + ..|++.++.+
T Consensus       292 ~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~  368 (382)
T TIGR00902       292 AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIA  368 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHH
Confidence            999999999999999999999999999988 9999999999976 5788999999999999999887 5 4455555555


Q ss_pred             HHHHHHhh
Q 022133          219 AILCLAMV  226 (302)
Q Consensus       219 ~~~~~~~~  226 (302)
                      +++++..+
T Consensus       369 ~~~~~~~~  376 (382)
T TIGR00902       369 AAAFFLIP  376 (382)
T ss_pred             HHHHHHHH
Confidence            55554443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.53  E-value=2.8e-13  Score=120.16  Aligned_cols=157  Identities=15%  Similarity=0.134  Sum_probs=125.9

Q ss_pred             cchhhhhhhhhcccCCcc--hhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 022133           70 VNEPLESISLDLGFNGNT--LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLG  147 (302)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  147 (302)
                      ..+..+.+..+.+.+.+.  ...+.+.++..++..++.++.|+++||+|||+.+..+..+.+++.+.....++.+.+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (408)
T PRK09874        238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL  317 (408)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            344555555544322222  123556666778888999999999999999999999888887777777767777878888


Q ss_pred             HHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhc
Q 022133          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF  227 (302)
Q Consensus       148 r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~  227 (302)
                      +++.|++.+...+....++.+..|++.||+.+++++....+|..++|.+++.+.+..| |+..|++.++..+++.+..++
T Consensus       318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        318 RFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888899999999999999999999999999999999999988888 899999887777776655543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.52  E-value=2.4e-13  Score=121.18  Aligned_cols=159  Identities=14%  Similarity=0.078  Sum_probs=129.1

Q ss_pred             cchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 022133           70 VNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (302)
Q Consensus        70 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r  148 (302)
                      ...+.|.+.++ +|.+....  +++.+...++.+++.++.+++.||.++++.+..+.++.+++.++..+.++.....++.
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQI--GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCL  319 (417)
T ss_pred             HHHhhHHHHHhccCCChhHh--HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence            34456666666 77765554  8888999999999999999999998888888888888888877777788887777888


Q ss_pred             HHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhH-HHHHHHHHHhhc
Q 022133          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI-VPAAILCLAMVF  227 (302)
Q Consensus       149 ~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~-~~~~~~~~~~~~  227 (302)
                      ++.|++.+...+...+++.|..|++.||++.++++....+|..+++.+.+.+.+..| ++..++..+ +..+++++....
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  398 (417)
T PRK10489        320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLV  398 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHh
Confidence            889998887777778899999999999999999999999999999999999998877 566665544 444445666666


Q ss_pred             cCCC
Q 022133          228 CAES  231 (302)
Q Consensus       228 ~pe~  231 (302)
                      +|+.
T Consensus       399 ~~~~  402 (417)
T PRK10489        399 LGEL  402 (417)
T ss_pred             cccc
Confidence            7776

>TIGR00895 2A0115 benzoate transport

Probab=99.51  E-value=1.8e-13  Score=120.55  Aligned_cols=137  Identities=19%  Similarity=0.171  Sum_probs=106.9

Q ss_pred             HHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchh
Q 022133           62 LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL  141 (302)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~  141 (302)
                      ...........+.|.+.++.|.+.+..  ++..+...++.+++.++.|+++||+|||+.+....+..+...++.....+.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (398)
T TIGR00895       261 MLLVGVYFLTNWLPKLMVELGFSLSLA--ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSP  338 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCH
Confidence            333334445556777778888776555  788899999999999999999999999955444443333333333334566


Q ss_pred             HHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcc
Q 022133          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (302)
Q Consensus       142 ~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  200 (302)
                      ..+++..++.|++.+...+....++.|.+|++.|+++.|+.+....+|..++|.+++.+
T Consensus       339 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       339 TLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            66777888999999999999999999999999999999999999999999999998865

>TIGR00897 2A0118 polyol permease family

Probab=99.51  E-value=1.1e-12  Score=116.28  Aligned_cols=164  Identities=12%  Similarity=0.056  Sum_probs=119.7

Q ss_pred             HHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH-HHHHHHHHHHHHHhh-
Q 022133           60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-LCALPMIIGASISAT-  137 (302)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~-~~~~~~~i~~~~~~~-  137 (302)
                      .+...........+.|.+.+++|++..+.  +.+.+...++..++.++.|+++||+|||+.+. .+.+..+++.+.... 
T Consensus       231 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~  308 (402)
T TIGR00897       231 RIINTIGLFGFAVFLPMFVAELGFSTSEW--LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYI  308 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            33333334445567788888888876665  77788888999999999999999999888764 333333333322221 


Q ss_pred             ----cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHH
Q 022133          138 ----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (302)
Q Consensus       138 ----~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~  213 (302)
                          .++...+++..++.|++.+...+ ....+.|..| ++|+++.|+++....+|..++|.+++.+.+..| |...+++
T Consensus       309 ~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~  385 (402)
T TIGR00897       309 PQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWI  385 (402)
T ss_pred             HHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHH
Confidence                24566666778888888776654 3456677655 589999999999999999999999999999888 7888888


Q ss_pred             hHHHHHHHHHHhhcc
Q 022133          214 SIVPAAILCLAMVFC  228 (302)
Q Consensus       214 ~~~~~~~~~~~~~~~  228 (302)
                      .+++.++..+...|+
T Consensus       386 ~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       386 FAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            777777766655554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.51  E-value=1.2e-13  Score=124.52  Aligned_cols=158  Identities=16%  Similarity=0.124  Sum_probs=134.6

Q ss_pred             hhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 022133           67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLL  146 (302)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~  146 (302)
                      ...++.+.+.+.++++.+.++.  +|+.++......+..++.+.+.||+|.|.+.++|.++..++.++..++++.+.+++
T Consensus        62 ~~~~Gv~~~~~~~~f~~s~~~~--~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~l  139 (509)
T KOG2504|consen   62 INSFGLLFEELMDYFGSSSSQI--AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYL  139 (509)
T ss_pred             hheehhhHHHHHHHhCCCccHH--HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            3345567788899999887774  89999999999999999999999999999999999999999999999999877666


Q ss_pred             H-HHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHh
Q 022133          147 G-RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (302)
Q Consensus       147 ~-r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~  225 (302)
                      . -++.|+|.|+.+....+++..+|+ +.|+.+.|+...+.++|.++-|.+...+.+..| ||..+++.+.+.+-.++..
T Consensus       140 t~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G-~r~~~l~~~~~~l~~~~~~  217 (509)
T KOG2504|consen  140 TFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG-WRGALLIFGGISLNVLVAG  217 (509)
T ss_pred             HHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHH
Confidence            5 588999999999888888897775 559999999999999999999999999999999 8988887666655554444


Q ss_pred             hcc
Q 022133          226 VFC  228 (302)
Q Consensus       226 ~~~  228 (302)
                      ..+
T Consensus       218 ~~~  220 (509)
T KOG2504|consen  218 ALL  220 (509)
T ss_pred             HHc
Confidence            433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.50  E-value=6.6e-13  Score=118.52  Aligned_cols=177  Identities=16%  Similarity=0.225  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHH-HHHH
Q 022133           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGRRRAFQLC-ALPM  128 (302)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~Grr~~~~~~-~~~~  128 (302)
                      +.++...+..++......++++.+.+++|.+....  +++..+..+..++.+++.|+++|    |+|||+.++.+ .+..
T Consensus         7 i~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~--~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~   84 (477)
T TIGR01301         7 LRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWA--SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV   84 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence            34444444445555666677777888888865544  88899999999999999999999    59999998875 5556


Q ss_pred             HHHHHHHhhcchhH-----------------HHHHHHHHHhhhhcchhhhHHHHhhhcCCCCcc--chhHhHHHHHHHHH
Q 022133          129 IIGASISATTRNLI-----------------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVR--GTYGAFIQIATCLG  189 (302)
Q Consensus       129 ~i~~~~~~~~~~~~-----------------~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R--~~~~~~~~~~~~~g  189 (302)
                      +++..+++++++..                 ..+++..+..++.....+...++++|.+|+++|  +.+.++.+....+|
T Consensus        85 ~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG  164 (477)
T TIGR01301        85 AFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIG  164 (477)
T ss_pred             HHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHH
Confidence            66666666655432                 223333444557777778888999999999876  57888899999999


Q ss_pred             HHHHHHHhhccc--cc--------C----cchHHHHHHhHHHHHHHH-HHhhccCCCh
Q 022133          190 LMGSLLIGIPVK--EI--------A----GWWRICFWVSIVPAAILC-LAMVFCAESP  232 (302)
Q Consensus       190 ~~~~~~~~~~~~--~~--------~----g~w~~~~~~~~~~~~~~~-~~~~~~pe~~  232 (302)
                      ..+++.+++...  +.        .    ...+..|++.++..++.. +..++.+|.|
T Consensus       165 ~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       165 NVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            999999887641  11        0    136888988777666654 4556688865

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.49  E-value=3.3e-13  Score=122.90  Aligned_cols=143  Identities=16%  Similarity=0.078  Sum_probs=108.1

Q ss_pred             cchhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc--chhHHHHH
Q 022133           70 VNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT--RNLIGMLL  146 (302)
Q Consensus        70 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~  146 (302)
                      ...++|.+. +++|++..+.  +++.+...++.+++.++.|+++||+|||++++.+.++..+..+.....  .+.+.+.+
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTV--ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGL  371 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            345677776 4778776655  899999999999999999999999999999888877666555443332  33333334


Q ss_pred             HHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhH
Q 022133          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (302)
Q Consensus       147 ~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~  215 (302)
                      ..++.++...+..+..+.++.|.+|++.|++++++++....+|..++|.+++.+.+..| |+..+...+
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~  439 (496)
T PRK03893        372 LLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLS  439 (496)
T ss_pred             HHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHH
Confidence            44444443333446677889999999999999999999889999999999999999888 777665443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.49  E-value=1e-12  Score=115.71  Aligned_cols=153  Identities=13%  Similarity=0.112  Sum_probs=119.4

Q ss_pred             cchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 022133           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (302)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~  149 (302)
                      ...++|.+.++.|.+.+..  ++..+...++.++++++.|+++||+|+|+++..+..+.+++.+...  . ........+
T Consensus       219 ~~~~lp~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~  293 (381)
T PRK03633        219 LYGLMPLYLNHQGMSDASI--GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALF  293 (381)
T ss_pred             HHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHH
Confidence            3345677777777765544  7888888899999999999999999999999888877777655443  2 223344567


Q ss_pred             HHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhcc
Q 022133          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC  228 (302)
Q Consensus       150 ~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~  228 (302)
                      +.|++.+...|....++.|..|+++++...+.++....+|.+++|.+++.+.+..+ |++.|.+.+.+.++..+..+..
T Consensus       294 l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        294 ILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHhc
Confidence            77777777788888889999999888888888888899999999999999998888 7888888777766665555443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.49  E-value=1.6e-12  Score=116.60  Aligned_cols=178  Identities=16%  Similarity=0.159  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHHHhhhhccchhhhhh-hhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHH
Q 022133           52 HVLVATLSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR--RAFQLCALPM  128 (302)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr--~~~~~~~~~~  128 (302)
                      .+....++.++..-..+.+......+ .+++|++..+.  ..+..+..+..++|++++|++.||+|.|  ++++++.++.
T Consensus       282 ~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l--~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  282 QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQL--IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW  359 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            34444455554443333444444444 44789887776  5677777888899999999999999999  8888888877


Q ss_pred             HHHHHHHhh--------cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcc
Q 022133          129 IIGASISAT--------TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (302)
Q Consensus       129 ~i~~~~~~~--------~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  200 (302)
                      .+.++...+        ..+.+.+.+.-++.|++.|..++..-++.+|+.|+.+.+...|++.+..-..+.+||++.+.+
T Consensus       360 ~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i  439 (477)
T PF11700_consen  360 IIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLI  439 (477)
T ss_pred             HHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555554443        456777888899999999999999999999999999999999999999999999999999999


Q ss_pred             cccCcchHHHHHHhHHHHHHHHHHhhccCCC
Q 022133          201 KEIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (302)
Q Consensus       201 ~~~~g~w~~~~~~~~~~~~~~~~~~~~~pe~  231 (302)
                      .+..|.-|+.++...++.+++++++++++..
T Consensus       440 ~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  440 TDATGSQRYGFLFLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence            9888777888888778888888877777664

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.49  E-value=2.7e-12  Score=113.41  Aligned_cols=147  Identities=13%  Similarity=0.070  Sum_probs=114.3

Q ss_pred             hhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-HHhhcchhHHHHHHHHHHhhh
Q 022133           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS-ISATTRNLIGMLLGRFVVGTG  154 (302)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~r~~~g~~  154 (302)
                      .+.+..|.+.++.  +++.+...++.++++++.|+++||+|||.... +..+..++.. .....++...++++.++.|++
T Consensus       231 ~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~  307 (390)
T PRK03545        231 FVQQVAGLSENFA--TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIA  307 (390)
T ss_pred             HHHHhcCCCccHH--HHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            3444467776655  78888899999999999999999999887544 4444333333 334556777777888889998


Q ss_pred             hcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhc
Q 022133          155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF  227 (302)
Q Consensus       155 ~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~  227 (302)
                      .+...+.....+.+..| +.|++++++++....+|..+||++++.+.+..| ++..|++.+++.+++++....
T Consensus       308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHHH
Confidence            87776777788888877 588999999999999999999999999999988 899998887777776555443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.47  E-value=8.7e-13  Score=116.68  Aligned_cols=142  Identities=20%  Similarity=0.177  Sum_probs=110.1

Q ss_pred             cchhhhhh-hhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-HHhhcchhHHHHHH
Q 022133           70 VNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS-ISATTRNLIGMLLG  147 (302)
Q Consensus        70 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~  147 (302)
                      ...+.|.+ .+++|++..+.  +++.+...++.+++.++.|+++||+|||+.+.++.++.++... .....++.+.+.+.
T Consensus       257 ~~~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (405)
T TIGR00891       257 IQDLLPTYLKADLGLSPHTV--ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLG  334 (405)
T ss_pred             hhhhhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence            33444544 45567766555  7888999999999999999999999999998888776533332 33344555666666


Q ss_pred             HHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHH
Q 022133          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (302)
Q Consensus       148 r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~  213 (302)
                      .++.|++.+...+....++.|.+|++.|++++|+.+....+|..++|.+++.+.+..|.|+..+..
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       335 LFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            677777777777788889999999999999999999999999999999999999887755555443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.47  E-value=2.4e-13  Score=113.77  Aligned_cols=132  Identities=20%  Similarity=0.115  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccch
Q 022133           98 LGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGT  177 (302)
Q Consensus        98 ~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~  177 (302)
                      .+...-|.++.+++.||+|||+.|..+.++.++..++...+.+.....+..+..-++..+.+.+.++|..|++|+..|++
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat  470 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT  470 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence            34556899999999999999999999999999988877766554444444455555556667788999999999999999


Q ss_pred             hHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhccCCC
Q 022133          178 YGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (302)
Q Consensus       178 ~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~pe~  231 (302)
                      +.|..+....+|+++.|+++ ...+... .-..+.+++++.+.++...++--||
T Consensus       471 gvGtcSsmaRIggI~~p~iA-~~~e~s~-sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  471 GVGTCSSMARIGGIFSPVIA-MRAELST-SLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             chhhhhhHHhhhhhhhhHHH-HHhccce-eehHHHHHHHHHHHHHHheeeeecc
Confidence            99999999999999999999 3333322 2344444444444444444444466

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.46  E-value=4.4e-12  Score=111.68  Aligned_cols=186  Identities=21%  Similarity=0.234  Sum_probs=143.4

Q ss_pred             cchhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHH
Q 022133           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLC  124 (302)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Gr-r~~~~~~  124 (302)
                      .+..|+.+.+..+..++...+..++.+..-.+.++++.+.+...-|+++++..+|.+++++.+|+.+.|.|. |+.++.|
T Consensus        29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s  108 (488)
T KOG2325|consen   29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVS  108 (488)
T ss_pred             cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHH
Confidence            345567788888888888888888777776777775555444455999999999999999999999999986 7788999


Q ss_pred             HHHHHHHHHHH-hh---cc-hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhc
Q 022133          125 ALPMIIGASIS-AT---TR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (302)
Q Consensus       125 ~~~~~i~~~~~-~~---~~-~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~  199 (302)
                      .++.++++++. .+   .+ ....++++|++.|+|.|.. ...-.|+++-...++|.++++..+.+..+|..+||.++..
T Consensus       109 ~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~  187 (488)
T KOG2325|consen  109 FLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA  187 (488)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence            99999999887 32   23 5678899999999998876 5778999999999999999999888888888888877766


Q ss_pred             ccccC--c----------chHHHHHHhHHHHHHHHHH-hhccCCCh
Q 022133          200 VKEIA--G----------WWRICFWVSIVPAAILCLA-MVFCAESP  232 (302)
Q Consensus       200 ~~~~~--g----------~w~~~~~~~~~~~~~~~~~-~~~~pe~~  232 (302)
                      +....  |          .+..+-|+.++..++.++. .+++.|.+
T Consensus       188 f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~  233 (488)
T KOG2325|consen  188 FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVY  233 (488)
T ss_pred             HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence            54321  1          1345666776666665544 45567753

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.46  E-value=4.5e-12  Score=115.86  Aligned_cols=233  Identities=17%  Similarity=0.068  Sum_probs=140.8

Q ss_pred             CcchhhhhhhhcccCCCCCC-CCccchhhhhhhhcCc----cccc-cCCCCcchhHHHHH-HHHHHHHHHHhhhhccchh
Q 022133            1 MWGRQREASMMYKRTSSRDR-SSTFDVEETTALVQNG----TEVE-NTNPSWKLSFPHVL-VATLSSFLFGYHLGVVNEP   73 (302)
Q Consensus         1 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   73 (302)
                      ++||.+||+..+.++.+..+ +...+.++.......+    ..+. ..+...+...+... .+.+..+.+....+....|
T Consensus       238 ~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y  317 (513)
T KOG0254|consen  238 EKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYY  317 (513)
T ss_pred             HcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEee
Confidence            37899999999999988332 1121211111010000    0000 00001122333333 3444444444555677888


Q ss_pred             hhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcch-------------
Q 022133           74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRN-------------  140 (302)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~-------------  140 (302)
                      .+.+.+..|.+.+..   +...+..+...++..++.++.||+|||+.++.+.+.+.++.++++....             
T Consensus       318 ~~~if~~~g~~~~~~---~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~  394 (513)
T KOG0254|consen  318 STTIFKSAGLKSDTF---LASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAG  394 (513)
T ss_pred             hHHHHHhcCCCCchH---HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchh
Confidence            888888888776542   4556666677788888899999999999999999999999887764211             


Q ss_pred             hHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchH-HHHHHhHHHHH
Q 022133          141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR-ICFWVSIVPAA  219 (302)
Q Consensus       141 ~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~-~~~~~~~~~~~  219 (302)
                      +..+....+.......+..++.+.+.+|.+|.+.|+++.++......+..++-...........+ +. ..+++.++..+
T Consensus       395 ~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~-~~~~f~~f~~~~~~  473 (513)
T KOG0254|consen  395 WLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG-IGGTFGYFGGICLL  473 (513)
T ss_pred             HHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHH
Confidence            11222222222333333446777899999999999999999777766665555444444443332 12 33334444444


Q ss_pred             HHH-HHhhccCCChHHHHHhCCHHH
Q 022133          220 ILC-LAMVFCAESPHWLYKKGRTAE  243 (302)
Q Consensus       220 ~~~-~~~~~~pe~~~~~~~~~~~~~  243 (302)
                      ... ..++++|||      ++++.|
T Consensus       474 ~~~~fv~~~~pET------kg~sle  492 (513)
T KOG0254|consen  474 SLIIFVFFFVPET------KGLTLE  492 (513)
T ss_pred             HHHHHheEEcccC------CCCcHH
Confidence            455 577889999      888777

>PRK15075 citrate-proton symporter; Provisional

Probab=99.45  E-value=5.2e-12  Score=113.17  Aligned_cols=140  Identities=18%  Similarity=0.101  Sum_probs=99.1

Q ss_pred             Hhhhhccchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-HH---hhc
Q 022133           64 GYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS-IS---ATT  138 (302)
Q Consensus        64 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~-~~---~~~  138 (302)
                      ......+..+.|.+.++ .|++.++.  ++......++..++.+++|+++||+|||+.++.+..+.++... ..   ...
T Consensus       251 ~~~~~~~~~~~p~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  328 (434)
T PRK15075        251 TVSFYLITVYTPTFGKTVLHLSAADS--LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAA  328 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            33344456667777655 68776554  6777788888999999999999999999998876554433221 11   112


Q ss_pred             chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHH-HHHHHHHHHHHHHHhhcccccCc
Q 022133          139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFI-QIATCLGLMGSLLIGIPVKEIAG  205 (302)
Q Consensus       139 ~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~g  205 (302)
                      ++...+.+..++.+++.+...+....++.|.+|++.|+++.++. +.+..+++.++|.+.+.+.+..|
T Consensus       329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        329 PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            33433444455566667766666778899999999999999985 55555567788999998888766

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.45  E-value=4.5e-12  Score=114.18  Aligned_cols=170  Identities=16%  Similarity=0.127  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHhhhhccchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh--hHHHHH-HHHHHHHHH
Q 022133           55 VATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAF-QLCALPMII  130 (302)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--Grr~~~-~~~~~~~~i  130 (302)
                      ...+..++..........++|.+.++ .|++.++.  ++....+.++.+++.++.|+++||+  |||... +....+..+
T Consensus       257 ~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~  334 (452)
T PRK11273        257 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI  334 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence            33344333333334455677776655 67776554  6778888888999999999999999  555432 222233333


Q ss_pred             HHHHHhh--cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHH-HHHHHhhcccccCcch
Q 022133          131 GASISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM-GSLLIGIPVKEIAGWW  207 (302)
Q Consensus       131 ~~~~~~~--~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~g~w  207 (302)
                      +.+.+.+  ..+.....+..++.|.+..........+..|.+|++.||++.|+.+....+|+. .+|.+.+.+.+..| |
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~  413 (452)
T PRK11273        335 ATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-W  413 (452)
T ss_pred             HHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-c
Confidence            3322222  234444444445555543333333445678999999999999999887777755 57999999988888 8


Q ss_pred             HHHHHHhHHHHHHHHHHhhc
Q 022133          208 RICFWVSIVPAAILCLAMVF  227 (302)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~  227 (302)
                      +..|++.+..++++++...+
T Consensus       414 ~~~f~~~~~~~~~~~~~~~~  433 (452)
T PRK11273        414 DGGFMVMIGGSILAVILLIV  433 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            99988777666666555443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.45  E-value=5.5e-12  Score=112.94  Aligned_cols=159  Identities=13%  Similarity=0.085  Sum_probs=99.7

Q ss_pred             ccchhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh--h--cchhHH
Q 022133           69 VVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA--T--TRNLIG  143 (302)
Q Consensus        69 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~--~--~~~~~~  143 (302)
                      ....++|.+. +++|.+.++.  +...++..++..+++++.|+++||+|||+.++++.++.++......  .  ..+...
T Consensus       261 ~~~~~lp~~l~~~~g~s~~~~--~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (432)
T PRK10406        261 TFTTYMQKYLVNTAGMHANVA--SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYA  338 (432)
T ss_pred             HHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            3455667655 4567765444  6777777777888999999999999999988776655433332111  1  222222


Q ss_pred             HHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHH-HHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHH
Q 022133          144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (302)
Q Consensus       144 ~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~  222 (302)
                      .+..-.+.+++.+...+....+++|++|++.|++++|+.+. +..+++..+|.+.+.+. ..|.|...+++.++..+++.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~  417 (432)
T PRK10406        339 AFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAF  417 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHH
Confidence            22222223333334445567889999999999999999654 44444445777777553 34546666666666666666


Q ss_pred             HHhhccCC
Q 022133          223 LAMVFCAE  230 (302)
Q Consensus       223 ~~~~~~pe  230 (302)
                      +..+++++
T Consensus       418 ~~~~~l~~  425 (432)
T PRK10406        418 LVSLMLHR  425 (432)
T ss_pred             HHHHHhhh
Confidence            65555443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.44  E-value=7.6e-12  Score=111.44  Aligned_cols=165  Identities=17%  Similarity=0.146  Sum_probs=111.7

Q ss_pred             HHHHHHHhhhhccchhhh-hhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHH
Q 022133           58 LSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCALPMIIGASIS  135 (302)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Gr-r~~~~~~~~~~~i~~~~~  135 (302)
                      +..+......+...++++ .+.++.|++..+.  |++.+++.++..++++++|.++||+|| |+++.++.++..++..+.
T Consensus         9 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~i--Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~   86 (418)
T TIGR00889         9 FMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEI--GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA   86 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            344444445555544444 4556678877665  999999999999999999999999965 888888888888888888


Q ss_pred             hhcchhHHHHHHHHHHhhhhcchhhhHHHHh----h----hcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcch
Q 022133          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYV----T----EVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (302)
Q Consensus       136 ~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~----~----e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w  207 (302)
                      .+.++++.+++.|++.|++.+...+...+..    .    |......|.+..|      .+|.+++|.+++.+....+ |
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~-~  159 (418)
T TIGR00889        87 AQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELS-N  159 (418)
T ss_pred             HHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccch-h
Confidence            8888899889999999998776665544432    1    2222223334333      3577777777776633222 4


Q ss_pred             HHHHHHhHHHHHHHHHHhhccCCCh
Q 022133          208 RICFWVSIVPAAILCLAMVFCAESP  232 (302)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~pe~~  232 (302)
                      . .|++.++..++.++..+++||+|
T Consensus       160 ~-~f~~~~~~~~~~~~~~~~~~e~~  183 (418)
T TIGR00889       160 I-QLYITAGSSALLGVFALTLPDIP  183 (418)
T ss_pred             H-HHHHHHHHHHHHHHHHhcCCCCC
Confidence            4 34455555555555566788864

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.44  E-value=5.6e-12  Score=112.58  Aligned_cols=137  Identities=15%  Similarity=0.095  Sum_probs=99.5

Q ss_pred             cchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 022133           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (302)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~  149 (302)
                      +..++|.+.++.|.+.+..  +...+...++..++.++.|+++||+|||+.+..+.++.++..+.....++.....+..+
T Consensus       250 ~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVV--SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGAC  327 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence            3446677777777665544  77788888899999999999999999999998888776665554433222111222222


Q ss_pred             HHhh--hhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHH
Q 022133          150 VVGT--GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (302)
Q Consensus       150 ~~g~--~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~  209 (302)
                      +.|+  +..+..+..+.++.|.+|++.||+++|+......+|..++|.+.+.+.+..| +..
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~  388 (426)
T PRK12307        328 LFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGA  388 (426)
T ss_pred             HHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHH
Confidence            3333  2233345666788999999999999999988889999999999999988877 444

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.44  E-value=1.3e-12  Score=117.15  Aligned_cols=162  Identities=19%  Similarity=0.200  Sum_probs=115.4

Q ss_pred             hhccchhhh-hhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh----hhH-HHHHHHHHHHHHHHHHHHhhcch
Q 022133           67 LGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGR-RRAFQLCALPMIIGASISATTRN  140 (302)
Q Consensus        67 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~Gr-r~~~~~~~~~~~i~~~~~~~~~~  140 (302)
                      .+.+..+++ .+.+++|++....  |++.++..+..++..|+.|+++||    +|| |+.++.+.+..+++.+++...++
T Consensus        15 ~~~~~~~l~~~~~~~~g~s~~~~--g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~   92 (437)
T TIGR00792        15 FAIVSTYLLFFYTDVLGLSAAFV--GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPD   92 (437)
T ss_pred             HHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCC
Confidence            334444444 4555678776655  999999999999999999999998    677 45667777777777776665543


Q ss_pred             ------hHHHHHHHHHHhhhhcchhhhHHHHhhhcC-CCCccchhHhHHHHHHHHHHHHHHHHhhccc-------ccCcc
Q 022133          141 ------LIGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-------EIAGW  206 (302)
Q Consensus       141 ------~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~g~  206 (302)
                            ...+++.+++.+++.+.......++..|+. ++++|++..++.+.+..+|..+++.+.+.+.       +..+ 
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g-  171 (437)
T TIGR00792        93 FSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG-  171 (437)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-
Confidence                  345566778888888877667778888987 5689999999988888888766655544333       1234 


Q ss_pred             hHHHHHHhHHHHHHHHH-HhhccCCC
Q 022133          207 WRICFWVSIVPAAILCL-AMVFCAES  231 (302)
Q Consensus       207 w~~~~~~~~~~~~~~~~-~~~~~pe~  231 (302)
                      |++.+++.++++++..+ ..++.+|+
T Consensus       172 ~~~~~~i~~~l~~~~~~~~~~~~~e~  197 (437)
T TIGR00792       172 WFMFALVLALIGVVSLIICFFGTKER  197 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCEec
Confidence            89988877766665544 44556665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.42  E-value=1.1e-11  Score=111.15  Aligned_cols=116  Identities=19%  Similarity=0.134  Sum_probs=96.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHhhhhcchhhhHHHHhhh
Q 022133           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-RNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (302)
Q Consensus        90 ~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e  168 (302)
                      .+++.+...++.+++.+++++++||+|+|+.+..+.++.+++.+...+. .+...+++..++.|++.+...+...++++|
T Consensus       259 ~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  338 (437)
T TIGR00792       259 FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVAD  338 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3677777888999999999999999999999999988888777766554 355666777888899999888888999998


Q ss_pred             cCC-------CCccchhHhHHHHHHHHHHHHHHHHhhcccccCc
Q 022133          169 VSP-------PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (302)
Q Consensus       169 ~~p-------~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  205 (302)
                      ..+       ++.+|...|+++.+..+|..+++.+.+.+.+..|
T Consensus       339 ~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       339 TVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             hhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            865       5667899999999999999999999888765444

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.42  E-value=5.7e-12  Score=114.11  Aligned_cols=154  Identities=12%  Similarity=0.004  Sum_probs=104.5

Q ss_pred             chhhhhh-hhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHH-------HHHHHHHHHHHHHHHHHhhcchhH
Q 022133           71 NEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR-------RAFQLCALPMIIGASISATTRNLI  142 (302)
Q Consensus        71 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr-------~~~~~~~~~~~i~~~~~~~~~~~~  142 (302)
                      ..++|.+ .+++|++....  +.+.+++.++.+++.+++|+++||+|||       ..+.+..++.++..++.....+..
T Consensus       272 ~~~~p~~l~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~  349 (476)
T PLN00028        272 DNIIAEYFYDRFGLSLETA--GAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLG  349 (476)
T ss_pred             HhHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHH
Confidence            3345544 45568776555  7888899999999999999999999976       233333333333344444455555


Q ss_pred             HHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHH
Q 022133          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (302)
Q Consensus       143 ~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~  222 (302)
                      ..++..++.+++.+...+....++.++.| +.||...|+.+.+..+|+.+++.+.+ .....+ |+..|++.+++.+++.
T Consensus       350 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~-y~~~f~~~~~~~~i~~  426 (476)
T PLN00028        350 AAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYS-TETGISLMGVMIIACT  426 (476)
T ss_pred             HHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCcc-HhhHHHHHHHHHHHHH
Confidence            55555566666666565666667777654 68999999988877888888777654 112233 8888888877777777


Q ss_pred             HHhhccC
Q 022133          223 LAMVFCA  229 (302)
Q Consensus       223 ~~~~~~p  229 (302)
                      ++.++++
T Consensus       427 ~~~~~~~  433 (476)
T PLN00028        427 LPVAFIH  433 (476)
T ss_pred             HHHHhee
Confidence            7766665

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.42  E-value=1.3e-11  Score=108.96  Aligned_cols=175  Identities=14%  Similarity=0.063  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHH--HHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHH-
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLV--VSMCLGGAFIGSTLS-GWIADGVGRRRAFQLCALPM-  128 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~-g~l~d~~Grr~~~~~~~~~~-  128 (302)
                      ...+...++.++...+...+++|.+.++.|.+.++.  |..  .+...+...+.++++ ++.+||+|||+..++...+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~i--Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTAL--AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence            345566678888888889999999999999887766  775  355667777777777 55799999999876665332 


Q ss_pred             HHHHHHHh---hcch-hHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC
Q 022133          129 IIGASISA---TTRN-LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (302)
Q Consensus       129 ~i~~~~~~---~~~~-~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  204 (302)
                      ++.....+   ...+ ...++...++.++..+...+....+..|..+.+.++...+....+..+|.++++...+.+.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~  160 (390)
T TIGR02718        81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF  160 (390)
T ss_pred             HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22222222   1222 2233444455556666667777778889998888888888888888999999998888888888


Q ss_pred             cchHHHHHHhHHHHHHHHHHhhccCC
Q 022133          205 GWWRICFWVSIVPAAILCLAMVFCAE  230 (302)
Q Consensus       205 g~w~~~~~~~~~~~~~~~~~~~~~pe  230 (302)
                      | ||..|++.++..++..+..++++|
T Consensus       161 g-w~~~f~~~a~l~~~~~~~~~~~~~  185 (390)
T TIGR02718       161 G-QRPAFLLVACVPLASLVCVLWLKD  185 (390)
T ss_pred             C-HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8 999999887777665555555544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.41  E-value=7.7e-12  Score=112.04  Aligned_cols=168  Identities=22%  Similarity=0.184  Sum_probs=109.6

Q ss_pred             HHHHHHHHHhhhhccchhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh--h-HHHHHHHHHHHHHHH
Q 022133           56 ATLSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--G-RRRAFQLCALPMIIG  131 (302)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--G-rr~~~~~~~~~~~i~  131 (302)
                      +.+..+........+..++|.+. +++|++..+.  +...+.+.++..++.++.|+++||+  + ||.......+...+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~  325 (434)
T PRK11663        248 LSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTA--NSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLS  325 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHH--HHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHH
Confidence            33333333333444555677666 5568776655  7888889999999999999999999  3 333322222111111


Q ss_pred             HH--HHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHH
Q 022133          132 AS--ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (302)
Q Consensus       132 ~~--~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~  209 (302)
                      ..  ......+...+.+..+..|++..........++.|.+|++.|++++|+.+....+|..++|.+.+.+.+..| |+.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~~~  404 (434)
T PRK11663        326 VGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-WTG  404 (434)
T ss_pred             HHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-cHH
Confidence            11  111122333333334444543332233345677899999999999999999999999999999999998888 899


Q ss_pred             HHHHhHHHHHHHHHHhh
Q 022133          210 CFWVSIVPAAILCLAMV  226 (302)
Q Consensus       210 ~~~~~~~~~~~~~~~~~  226 (302)
                      .|++.++++++..+..+
T Consensus       405 ~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        405 FFVVISIAAGISALLLL  421 (434)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99887777666555443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.41  E-value=8e-12  Score=113.33  Aligned_cols=165  Identities=18%  Similarity=0.134  Sum_probs=128.4

Q ss_pred             HHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh----
Q 022133           62 LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT----  137 (302)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~----  137 (302)
                      +..++..+.....+.+..+  .+.+....+++..+..+...+..+++|.++||+.||++++.+.++.++..+..++    
T Consensus        21 iS~lG~~~~~va~~wlv~~--lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~   98 (524)
T PF05977_consen   21 ISNLGDWMQTVALAWLVTQ--LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFF   98 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333333444444443  3456666689999999999999999999999999999999998877655443332    


Q ss_pred             -cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHH
Q 022133          138 -TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (302)
Q Consensus       138 -~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~  216 (302)
                       ..+.+.+++.-++.|++.+...|...+++.|+.|+++...+.++.++..++..++||.++|.+....| -.+.|++.++
T Consensus        99 ~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~~~~f~inal  177 (524)
T PF05977_consen   99 GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-AAAAFLINAL  177 (524)
T ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHHHHHHHHH
Confidence             24678888899999999999999999999999999999999999999999999999999999988777 4777877666


Q ss_pred             HHHHHHHHhhccC
Q 022133          217 PAAILCLAMVFCA  229 (302)
Q Consensus       217 ~~~~~~~~~~~~p  229 (302)
                      ..++.++.....+
T Consensus       178 sfl~~i~~l~~~~  190 (524)
T PF05977_consen  178 SFLISILALLRWK  190 (524)
T ss_pred             HHHHHHHHHHHcc
Confidence            6555544444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.39  E-value=2.1e-11  Score=107.36  Aligned_cols=150  Identities=13%  Similarity=0.063  Sum_probs=118.6

Q ss_pred             cchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 022133           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (302)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~  149 (302)
                      ...+.+.+.++.|.+....  |.+.+...++..+..++.+++.||+|+|+.+..+.++.++..+..+..++.+.+++..+
T Consensus       224 ~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (382)
T PRK11128        224 YYGFSAIYWQAAGYSASTI--GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQI  301 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            3345555667778775554  78888888888999999999999999999999999888888777778888888888999


Q ss_pred             HHhhhhcchhhhHHHHhhhcCCCCccchhHhHHH-HHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHH
Q 022133          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (302)
Q Consensus       150 ~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~  224 (302)
                      +.|++.+...+....++.+. +++++++..++++ ....+|..++|.++|.+.+..+ + ..++..+++.+.+++.
T Consensus       302 l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        302 LHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHH
Confidence            99999998888888888887 5566788888875 5667888999999999999887 4 4555555555544443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.39  E-value=3.7e-11  Score=100.83  Aligned_cols=160  Identities=19%  Similarity=0.221  Sum_probs=143.0

Q ss_pred             hhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 022133           65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM  144 (302)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~  144 (302)
                      -....+.+.++.+.+++|.+.+..  |+++++..+...+.+++..+++.|+|.++.+..++++.+++.++-... +...+
T Consensus        26 ~~itsvgPLL~~Ir~~~gls~s~a--GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L  102 (395)
T COG2807          26 PAITSVGPLLDEIRQDLGLSFSVA--GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLL  102 (395)
T ss_pred             hhhhhhhhhHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHH
Confidence            334568889999999999987776  999999999999999999999999999999999999999999988877 67778


Q ss_pred             HHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHH
Q 022133          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (302)
Q Consensus       145 ~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~  224 (302)
                      +.+-.+.|++.+......+..+-+.||++ -+..+++|.....+|..+++.+...+.++.++||....+-+.+++++++.
T Consensus       103 ~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~  181 (395)
T COG2807         103 FLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLI  181 (395)
T ss_pred             HHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999866 68999999999999999999999988887755999998888888888877


Q ss_pred             hhcc
Q 022133          225 MVFC  228 (302)
Q Consensus       225 ~~~~  228 (302)
                      ++.-
T Consensus       182 WlPq  185 (395)
T COG2807         182 WLPQ  185 (395)
T ss_pred             Hhhh
Confidence            7653

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.39  E-value=7.8e-12  Score=112.91  Aligned_cols=175  Identities=15%  Similarity=0.173  Sum_probs=152.1

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhh--HHHHHHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG--RRRAFQLCALPMII  130 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G--rr~~~~~~~~~~~i  130 (302)
                      .+...+...+......+...++|.+.++.+++.++.  +.+.++..+..+++.++.|+++|+..  ++.+..++.++.++
T Consensus       300 fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~a--a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl  377 (509)
T KOG2504|consen  300 FLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDA--AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL  377 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhh--HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence            444555555556666667778888888888877766  79999999999999999999999988  66667788888888


Q ss_pred             HHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHH
Q 022133          131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (302)
Q Consensus       131 ~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~  210 (302)
                      +.+.+++.++++.+++..++.|++.|.........+.|+.+.+.-..+.|+...+.+++.++||.+++.+.+..+.|...
T Consensus       378 ~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~  457 (509)
T KOG2504|consen  378 ARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHA  457 (509)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeee
Confidence            88888999999999999999999999998888889999999999999999999999999999999999999988888999


Q ss_pred             HHHhHHHHHHHHHHhhccC
Q 022133          211 FWVSIVPAAILCLAMVFCA  229 (302)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~p  229 (302)
                      |++.+++.+++.+.+++.|
T Consensus       458 f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  458 FYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             hhhcChHHHHHHHHHHHhH
Confidence            9998888888887777766

>PRK10504 putative transporter; Provisional

Probab=99.38  E-value=1.2e-11  Score=111.91  Aligned_cols=144  Identities=13%  Similarity=0.055  Sum_probs=108.2

Q ss_pred             HHHHHhhhhccchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 022133           60 SFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT  138 (302)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~  138 (302)
                      .++..........+.|.+.+. .|.+..  ..++......++..++.++.++++||+|||+++..+..+.+++..+..+.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~  347 (471)
T PRK10504        270 SFAGRIGSGMLPFMTPVFLQIGLGFSPF--HAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLV  347 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhc
Confidence            333333334444556666553 555443  44788888888888888999999999999999998888777776655543


Q ss_pred             ---chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCc
Q 022133          139 ---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (302)
Q Consensus       139 ---~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  205 (302)
                         .+...+.+..++.|++.+...+....++.+..|++.|+.+.++.+....+|..+|+.+++.+.+..+
T Consensus       348 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        348 ALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               3333344556778888888888888999999999999999999999999999999998887765443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.38  E-value=1.1e-11  Score=109.65  Aligned_cols=133  Identities=13%  Similarity=0.045  Sum_probs=112.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhc
Q 022133           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (302)
Q Consensus        90 ~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~  169 (302)
                      .|...++..++.+++.++.|++.||+|||+.+.++.++.++...+....++.+.+++.+++.|++.+........+..+.
T Consensus       256 ~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  335 (396)
T TIGR00882       256 FGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQ  335 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            37788888888889999999999999999999999888888777777788888888889999998777666667788888


Q ss_pred             CCCCccchhHhH-HHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHH
Q 022133          170 SPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (302)
Q Consensus       170 ~p~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~  223 (302)
                      .|++.+++..+. ++....+|..+++.+++++.+..| |+..|.+.++..++..+
T Consensus       336 ~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       336 FDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             CCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHH
Confidence            999999888776 678899999999999999999888 88988887666655443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.37  E-value=1e-11  Score=110.48  Aligned_cols=162  Identities=17%  Similarity=0.097  Sum_probs=106.7

Q ss_pred             HHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHHHHHHHH
Q 022133           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA-FQLCALPMIIGASI  134 (302)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~-~~~~~~~~~i~~~~  134 (302)
                      ..+..++.......+..++|.+.++++.+.+....+...+...++..++.++.|+++||+|||+. ++...++.+++..+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~  326 (412)
T TIGR02332       247 YTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLL  326 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHH
Confidence            33444444444555667888888875433333344788899999999999999999999997664 33343344333322


Q ss_pred             HhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHh
Q 022133          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (302)
Q Consensus       135 ~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~  214 (302)
                      .....+....+++-++.+++.....+.......|.+|+++|++++|+.+....+|.+++|.+.+.+.+..|.|+..+++.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~  406 (412)
T TIGR02332       327 ASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFV  406 (412)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHH
Confidence            22222222222222233333333333444556788999999999999999999999999999999988876688888765


Q ss_pred             HHH
Q 022133          215 IVP  217 (302)
Q Consensus       215 ~~~  217 (302)
                      ++.
T Consensus       407 ~~~  409 (412)
T TIGR02332       407 AAL  409 (412)
T ss_pred             HHH
Confidence            543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.37  E-value=8.9e-12  Score=108.52  Aligned_cols=131  Identities=15%  Similarity=0.128  Sum_probs=112.2

Q ss_pred             hhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHH
Q 022133           72 EPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRN-LIGMLLGRF  149 (302)
Q Consensus        72 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~r~  149 (302)
                      ...|.+.++ +|.+..+.  +++.+...++..++.++.+++.||+|||+.+..+..+.+++.....+.++ .+.+++..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHY--GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWF  309 (365)
T ss_pred             HHhHHHHHHHhCCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence            456666654 67665544  88889999999999999999999999999998888777777777776664 777788899


Q ss_pred             HHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC
Q 022133          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (302)
Q Consensus       150 ~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  204 (302)
                      +.|++.+...+....++.|.+|+++|++..++++....+|..++|.+++.+.+..
T Consensus       310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999887653

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.36  E-value=4.1e-11  Score=108.91  Aligned_cols=154  Identities=18%  Similarity=0.234  Sum_probs=115.1

Q ss_pred             hhhhhhcccCCcchhhHHHHH-HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH---hhc-chhHHHHHHHH
Q 022133           75 ESISLDLGFNGNTLAEGLVVS-MCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS---ATT-RNLIGMLLGRF  149 (302)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~~~~~r~  149 (302)
                      |.+.++.|++.++.  +++.. ...++.+++.+++|+++||+|+|+.+.++.++.++..+.+   +.. ++...+.+..+
T Consensus       247 ~~l~~~~G~s~~~~--g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~  324 (491)
T PRK11010        247 TFLIRGVGFDAGEV--GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF  324 (491)
T ss_pred             HHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            33445678776655  77764 5567889999999999999999988877666555444322   232 34444444556


Q ss_pred             HHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhccC
Q 022133          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCA  229 (302)
Q Consensus       150 ~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~p  229 (302)
                      +..++.|...+...++..++.+++.+++..++.+....+|..+++.+.|.+.+..| |+..|.+.+++++.+++...+++
T Consensus       325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence            65555566666778889999999999999999999999998888888999988888 89999988888888777766665


Q ss_pred             CC
Q 022133          230 ES  231 (302)
Q Consensus       230 e~  231 (302)
                      ++
T Consensus       404 ~~  405 (491)
T PRK11010        404 QT  405 (491)
T ss_pred             hc
Confidence            43

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.35  E-value=4.6e-11  Score=105.55  Aligned_cols=150  Identities=15%  Similarity=0.009  Sum_probs=110.1

Q ss_pred             hhhhhhhhhcccCCcchhhHHHHHHHH-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh-h-----cchhHHH
Q 022133           72 EPLESISLDLGFNGNTLAEGLVVSMCL-GGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA-T-----TRNLIGM  144 (302)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~-~-----~~~~~~~  144 (302)
                      .+.+.+.+|.|++.++.  |++..... ....++.++.|++.||+|+|+.+..+..+.++..+... .     .++...+
T Consensus       229 ~~~~~~l~~~G~s~~~i--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (390)
T TIGR02718       229 GLSKLYLVDAGWPLEWI--GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVA  306 (390)
T ss_pred             HHhhHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHH
Confidence            34556667788877665  77777665 45667889999999999999999887766533322221 1     1233334


Q ss_pred             HHHHHHHhhhhcchhhhHHHHhhhcCCC-CccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHH
Q 022133          145 LLGRFVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (302)
Q Consensus       145 ~~~r~~~g~~~~~~~~~~~~~~~e~~p~-~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~  223 (302)
                      .....+.+++.+...+.....+.+..++ +.+++.+++.+....+|..++|.+++.+.+..| ++..|++.+++.+++++
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       307 WSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHH
Confidence            4445566677777777777777777776 889999999999999999999999999998877 78888887766666544


Q ss_pred             H
Q 022133          224 A  224 (302)
Q Consensus       224 ~  224 (302)
                      .
T Consensus       386 ~  386 (390)
T TIGR02718       386 L  386 (390)
T ss_pred             H
Confidence            3

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.34  E-value=1.5e-11  Score=105.18  Aligned_cols=160  Identities=16%  Similarity=0.165  Sum_probs=136.3

Q ss_pred             cchhhhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 022133           70 VNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (302)
Q Consensus        70 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r  148 (302)
                      +......+.. ++|++..+.  .++.....+..++|++++|+|.||+|.|+++.++.++..+.++...+......+.++-
T Consensus       271 il~~~~~fg~~~~gls~~~l--ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~g  348 (438)
T COG2270         271 ILAMGGVFGAADLGLSSTEL--LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILG  348 (438)
T ss_pred             HHHHHHHHHHHHcCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHH
Confidence            3333444444 888877665  6778888889999999999999999999999999999988888777776666677778


Q ss_pred             HHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhcc
Q 022133          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC  228 (302)
Q Consensus       149 ~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~  228 (302)
                      ++.|++.|+.+...-++.+++.|+++-++..|+|+.....++++||.+-+.+.+..|.-|..+...++..+++++.++.+
T Consensus       349 ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v  428 (438)
T COG2270         349 LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRV  428 (438)
T ss_pred             HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEee
Confidence            89999999999999999999999999999999999999999999999999999888767777777777777777888877


Q ss_pred             CCC
Q 022133          229 AES  231 (302)
Q Consensus       229 pe~  231 (302)
                      |+.
T Consensus       429 ~~~  431 (438)
T COG2270         429 KVP  431 (438)
T ss_pred             cCC
Confidence            764

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.32  E-value=6.2e-11  Score=107.60  Aligned_cols=153  Identities=19%  Similarity=0.181  Sum_probs=129.3

Q ss_pred             ccchhhhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 022133           69 VVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLG  147 (302)
Q Consensus        69 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  147 (302)
                      .+...+|.+.+ .+|.+....  |++.+++.+|.++|.++.+.+.+|+++++.+..+.++.+++.+.+++.++.+..++.
T Consensus       236 a~~aLlPl~a~~~l~~~a~~y--Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~  313 (524)
T PF05977_consen  236 AVWALLPLFARDVLGGGASGY--GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIA  313 (524)
T ss_pred             HHHHhhhHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            34445676654 456554444  999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHH
Q 022133          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (302)
Q Consensus       148 r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~  224 (302)
                      .++.|++.....+...+.+.+..|.+.||+.++++.+....+..+|..+.|.+.+..| .+..+.++++..++..++
T Consensus       314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~~  389 (524)
T PF05977_consen  314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSALI  389 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHH
Confidence            9999999988888888999999999999999999999999999999999999999888 577777665554444333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.31  E-value=2.3e-11  Score=106.25  Aligned_cols=174  Identities=20%  Similarity=0.243  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHhhhhccchhhh-hhhhhcc----cCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLE-SISLDLG----FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCAL  126 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-Grr~~~~~~~~  126 (302)
                      +..+...-+-.-+..+.....+. ++..+++    ++++++  .-+.+++..-.=+...++||++||+ |+|+.++.|.+
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A--~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai  100 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHA--TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI  100 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhh--HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            44455555444444433332222 2333333    666655  3445555444447888999999995 99999999999


Q ss_pred             HHHHHHHHHhhcc--hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCC--ccchhHhHHHHHHHHHHHHHHHHhhcccc
Q 022133          127 PMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF--VRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (302)
Q Consensus       127 ~~~i~~~~~~~~~--~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~--~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  202 (302)
                      +++++.++.+.+.  +...++++..+.++|.|..-+...++++|.+|++  +|-.+.+++..+.++|++++|++.+++.+
T Consensus       101 l~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~  180 (498)
T COG3104         101 LMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI  180 (498)
T ss_pred             HHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence            9999999998884  7888999999999999999999999999999874  36667888888999999999999999999


Q ss_pred             cCcchHHHHHHhHHHHHHHHHHhhccC
Q 022133          203 IAGWWRICFWVSIVPAAILCLAMVFCA  229 (302)
Q Consensus       203 ~~g~w~~~~~~~~~~~~~~~~~~~~~p  229 (302)
                      ..| |+..|...++-...+++.++..+
T Consensus       181 ~~g-~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         181 NYG-WHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             hhC-HHHHHHHHHHHHHHHHHHHHHcc
Confidence            999 89999988777777776665543

>TIGR00788 fbt folate/biopterin transporter

Probab=99.31  E-value=4.6e-11  Score=107.85  Aligned_cols=173  Identities=16%  Similarity=0.118  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHhhhhccc-hhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhh-----HHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVN-EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-----RRRAFQLCAL  126 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-----rr~~~~~~~~  126 (302)
                      ..++...++..+.. +... ...+.+.+++|++..+.  +...+...+...+-.+ +|+++||++     ||+.++++.+
T Consensus        28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i--~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARY--QRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGL  103 (468)
T ss_pred             HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHH
Confidence            34455556777777 4444 44455566789887766  6888888898888655 999999998     7888888776


Q ss_pred             HH-HHHHHHHhhcchhH-HHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHH---HHHHHHHHHHHhhccc
Q 022133          127 PM-IIGASISATTRNLI-GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIA---TCLGLMGSLLIGIPVK  201 (302)
Q Consensus       127 ~~-~i~~~~~~~~~~~~-~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~---~~~g~~~~~~~~~~~~  201 (302)
                      +. +++....+..++.. ...+..++.+++.+......-++..|..+ +++....+..+..   ..+|.++++.+++.+.
T Consensus       104 l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~  182 (468)
T TIGR00788       104 LGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL  182 (468)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            66 34433444444543 33447889999999999999999999998 5555544443333   4479999999999988


Q ss_pred             ccCcchHHHHHHhHHHHHHHHHHhhccCCC
Q 022133          202 EIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (302)
Q Consensus       202 ~~~g~w~~~~~~~~~~~~~~~~~~~~~pe~  231 (302)
                      +..+ |+..|++.++..++..+..++++|+
T Consensus       183 ~~~~-~~~~f~~~a~l~ll~~~~~~~~~E~  211 (468)
T TIGR00788       183 DKTL-TRILFLITAALLLLQLFVSNLSKER  211 (468)
T ss_pred             HhcC-cchHHHHHHHHHHHHHHHHHhcccc
Confidence            8877 8999988777777666666778886

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.31  E-value=1.2e-10  Score=99.78  Aligned_cols=171  Identities=19%  Similarity=0.176  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHHhhhhccchhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh--hHHHHHHH-HHHH
Q 022133           52 HVLVATLSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQL-CALP  127 (302)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--Grr~~~~~-~~~~  127 (302)
                      .++.++++.+........+.-+.|.+. +..|++...+  ++..+.+-++.+.|++++|+++||+  |||..+.+ .+++
T Consensus       253 ~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a--~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~  330 (448)
T COG2271         253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKA--NWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL  330 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHH--HHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            577888888888888888888888665 4567776666  7999999999999999999999996  67766644 3444


Q ss_pred             HHHHHHHHhhcc--hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHH-HHHHHHHHhhcccccC
Q 022133          128 MIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIA  204 (302)
Q Consensus       128 ~~i~~~~~~~~~--~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~  204 (302)
                      ..++....-.++  |+....++.++.|+..-+..-+......|..|++--|++.|+...+..+ |...+...-+++.+..
T Consensus       331 i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~  410 (448)
T COG2271         331 ITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTW  410 (448)
T ss_pred             HHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecC
Confidence            444444444554  4577778888889887777666677888999999999999999888777 8888888888888887


Q ss_pred             cchHHHHHHhHHHHHHHHHHh
Q 022133          205 GWWRICFWVSIVPAAILCLAM  225 (302)
Q Consensus       205 g~w~~~~~~~~~~~~~~~~~~  225 (302)
                      | |...|++..+.++++.++.
T Consensus       411 g-W~g~Fi~~~~~a~l~~lll  430 (448)
T COG2271         411 G-WDGGFIVLSIAALLAILLL  430 (448)
T ss_pred             C-CcchHHHHHHHHHHHHHHH
Confidence            7 8998888766666655444

>TIGR00896 CynX cyanate transporter

Probab=99.30  E-value=4.7e-11  Score=104.05  Aligned_cols=137  Identities=18%  Similarity=0.073  Sum_probs=104.5

Q ss_pred             ccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 022133           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTRNLIGMLLG  147 (302)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  147 (302)
                      ....++|.+.++.|.+....  +.+.+...++.++++++.|+++||+ +||+.+.++.++.+++.+.+.+.++..... .
T Consensus       215 ~~~~~lp~~~~~~g~~~~~~--g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  291 (355)
T TIGR00896       215 SLIGWLPAILISHGASAATA--GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-W  291 (355)
T ss_pred             HHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-H
Confidence            34556777777777765554  8899999999999999999999999 567777777777777766665554433222 4


Q ss_pred             HHHHhhhhcchhhhHHHHhhhcCC-CCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchH
Q 022133          148 RFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (302)
Q Consensus       148 r~~~g~~~~~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~  208 (302)
                      .++.|++.+..++.....+.+..+ +++++...++.+....+|..++|.+.+.+.+..|.|.
T Consensus       292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            567899998888887777765554 5677888898888888899999999999988776553

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.30  E-value=1.3e-10  Score=99.28  Aligned_cols=156  Identities=12%  Similarity=0.115  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhhhhh---cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESISLD---LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~  129 (302)
                      ..+..+..++.......+..+.+.+..+   +|++.++.  +...+.+..+.++|.++.++++||+|+|+.+.++.++.+
T Consensus       142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a--~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~  219 (310)
T TIGR01272       142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQA--AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAV  219 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            3444444444443344455666666653   46665555  788999999999999999999999999999888888777


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHH
Q 022133          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (302)
Q Consensus       130 i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~  209 (302)
                      ++.++....++... ..+-++.|++.+..+|...+...+.+|++ .+++.++. ....+|+++.|.+.|.+.+..| .+.
T Consensus       220 ~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~~  295 (310)
T TIGR01272       220 LLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQL  295 (310)
T ss_pred             HHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-chH
Confidence            77665555444333 34556889999999999999998888764 45666665 4566899999999999988777 577


Q ss_pred             HHHHh
Q 022133          210 CFWVS  214 (302)
Q Consensus       210 ~~~~~  214 (302)
                      .+++.
T Consensus       296 a~~v~  300 (310)
T TIGR01272       296 AFALP  300 (310)
T ss_pred             HHHHH
Confidence            77643

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.29  E-value=2.5e-10  Score=99.92  Aligned_cols=168  Identities=14%  Similarity=0.022  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhH---HHHHHH-HHHHHH
Q 022133           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR---RRAFQL-CALPMI  129 (302)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Gr---r~~~~~-~~~~~~  129 (302)
                      +.+.+..+........+..++|.+.++.|++.. .  +...++..++..++   .++++||..|   |+.... ..++.+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~--~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a  268 (368)
T TIGR00903       195 WIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-A--GDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIA  268 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-H--HHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHH
Confidence            334444444444444566788888888777643 2  55555555544444   4677777654   343332 333344


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHH
Q 022133          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (302)
Q Consensus       130 i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~  209 (302)
                      +.....+...+....++.-.+.+++....++..+.+.+|.+|++.|++++|+.+....+|++++|.+.+.+..  + -..
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~-~~~  345 (368)
T TIGR00903       269 AFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--S-AEA  345 (368)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--C-HHH
Confidence            4444444444444445555667777777777788999999999999999999999999999888888876663  3 456


Q ss_pred             HHHHhHHHHHHHHHHhhccCC
Q 022133          210 CFWVSIVPAAILCLAMVFCAE  230 (302)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~pe  230 (302)
                      .|.+.+++.+++.+..+++++
T Consensus       346 ~f~~~~~~~~i~~~~~~~~~~  366 (368)
T TIGR00903       346 YFTFLAILITIAFAIALLLPN  366 (368)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC
Confidence            666666666665555444454

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.29  E-value=1.5e-10  Score=99.80  Aligned_cols=154  Identities=20%  Similarity=0.168  Sum_probs=123.1

Q ss_pred             cchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHH
Q 022133           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-RNLIGMLLGR  148 (302)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~r  148 (302)
                      +.+.-|.+.+..|++.+..  +++..++.++.++|+.+.|+++|| +.|+.+.....+.++..+.+.+. ++.+..++.-
T Consensus       231 ftYi~P~L~~v~g~s~~~v--s~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~  307 (394)
T COG2814         231 YTYIRPFLESVAGFSVSAV--SLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALL  307 (394)
T ss_pred             HHhHHHHHHHccCCCHhHH--HHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            4444555666677776655  899999999999999999999999 89999888888777777666554 4555666666


Q ss_pred             HHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhcc
Q 022133          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC  228 (302)
Q Consensus       149 ~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~  228 (302)
                      ++.|+..+.........+++ .-++.+..+.+++....++|..+|..+++.+.++.| +....+++++..+++++..+..
T Consensus       308 ~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         308 FLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG-YAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             HHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHHHH
Confidence            67888777666666666666 556889999999999999999999999999999987 8999999888888877666543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.29  E-value=4.1e-12  Score=109.37  Aligned_cols=186  Identities=17%  Similarity=0.069  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhh------HHHHHH-HHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 022133           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAE------GLVVSM-CLGGAFIGSTLSGWIADGVGRRRAFQL  123 (302)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~i~~~~~g~l~d~~Grr~~~~~  123 (302)
                      +.++..+...|+.....+..+.....+.+..|+..+....      .....+ ...+...|.++..+++|+.|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            4566667777887777777777888888877775544311      111122 223334467778889999999999999


Q ss_pred             HHHHHHHHHHHHhhcch----hHHHHHHHHHHhh-hhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhh
Q 022133          124 CALPMIIGASISATTRN----LIGMLLGRFVVGT-GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI  198 (302)
Q Consensus       124 ~~~~~~i~~~~~~~~~~----~~~~~~~r~~~g~-~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~  198 (302)
                      |.+++.+..+..+...+    ...++++..+..+ +.-+-......+.+|.||++.|+++-|+.....-+|++++.....
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            99999999988887655    2233333333332 222334456678899999999999999999999999999999988


Q ss_pred             cccc-----cCcchHHHHHHhHHHHHHHHHHhhccCCChHHHHHhCCHHH
Q 022133          199 PVKE-----IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAE  243 (302)
Q Consensus       199 ~~~~-----~~g~w~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~  243 (302)
                      ++.+     ..+ .+..+++.+.+.++..+..+++|||      ++++.|
T Consensus       464 ~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEt------k~~~le  506 (538)
T KOG0252|consen  464 YLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPET------KGKSLE  506 (538)
T ss_pred             HhhhccCCcccc-chHHHHHHHHHHHHhHheeEEeecc------cccCHH
Confidence            8887     556 6899999999999999999999999      777666

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.28  E-value=5.9e-11  Score=106.47  Aligned_cols=160  Identities=18%  Similarity=0.134  Sum_probs=102.3

Q ss_pred             ccchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH---HHHHHHHhhc--chhH
Q 022133           69 VVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM---IIGASISATT--RNLI  142 (302)
Q Consensus        69 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~---~i~~~~~~~~--~~~~  142 (302)
                      ....+.|.+.++ .|.+....  ++..+.+.++.+++.++.|+++||+|+++....+..+.   .++.+.+...  .+..
T Consensus       269 ~~~~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (438)
T TIGR00712       269 GVLDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPL  346 (438)
T ss_pred             HHHHhHHHHHHHccCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchH
Confidence            344566766654 57665554  78888888999999999999999996533222232221   1222222221  2333


Q ss_pred             HHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHH-HHHHHHHhhcccccCcchHHHHHHhHHHHHHH
Q 022133          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLG-LMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (302)
Q Consensus       143 ~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~  221 (302)
                      ...+..++.|++..+..........|.+|++.|+++.|+.+....+| .+++|.+.+.+.+..| |...+++.+...+++
T Consensus       347 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~  425 (438)
T TIGR00712       347 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILA  425 (438)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHH
Confidence            33334445555433332233456789999999999999998877776 5689999999988887 788887765555554


Q ss_pred             HH-HhhccCCC
Q 022133          222 CL-AMVFCAES  231 (302)
Q Consensus       222 ~~-~~~~~pe~  231 (302)
                      ++ ..+.+||.
T Consensus       426 ~~~~~~~~~~~  436 (438)
T TIGR00712       426 VILLIVVMIGE  436 (438)
T ss_pred             HHHHHHHHhhc
Confidence            44 44556664

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.26  E-value=2.3e-11  Score=106.39  Aligned_cols=151  Identities=17%  Similarity=0.185  Sum_probs=102.3

Q ss_pred             HHHHHHHHhhhhccchhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhh-HHH-HHHHHH-HHHHHHH
Q 022133           57 TLSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-RRR-AFQLCA-LPMIIGA  132 (302)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-rr~-~~~~~~-~~~~i~~  132 (302)
                      .+..+...........+.|.+. +.+|.+..+.  +...+...++.+++.++.|+++||.+ ||+ .+.... ....++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~  299 (379)
T TIGR00881       222 SLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKA--SWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSL  299 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence            3333333333344455566554 4567765554  78888899999999999999999864 333 222222 2222222


Q ss_pred             HHHhh--cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHH
Q 022133          133 SISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (302)
Q Consensus       133 ~~~~~--~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~  210 (302)
                      .....  ..+.....+..++.|+......+....++.|.+|++.|+++.++.+....+|..++|.+.+.+.+..| |+..
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~  378 (379)
T TIGR00881       300 LVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG-WAGA  378 (379)
T ss_pred             HHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc-cccc
Confidence            22222  23444555666677766655556667889999999999999999999999999999999999998877 7654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.26  E-value=1.4e-10  Score=104.80  Aligned_cols=174  Identities=12%  Similarity=0.067  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH--------HHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA--------FQL  123 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~--------~~~  123 (302)
                      ++...+..+...........++|.+.. .+|.+..+.  ++..++..++..++.++.|+++||+++|+.        +..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~  340 (465)
T TIGR00894       263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKEN--GLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFN  340 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            344455555555555556667776654 467766555  888889999999999999999999876521        111


Q ss_pred             HHHHH--HHHHHHHhh-cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcc
Q 022133          124 CALPM--IIGASISAT-TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (302)
Q Consensus       124 ~~~~~--~i~~~~~~~-~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  200 (302)
                      +....  ++....... ..+....+++..+.+.+.+...+.......|..|. .+|...++.+....+|++++|.+.+.+
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~  419 (465)
T TIGR00894       341 GIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNI  419 (465)
T ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            11111  111111122 22333334444455555554555555556677765 899999999999999999999999988


Q ss_pred             cccC--cchHHHHHHhHHHHHHHHHHhhccC
Q 022133          201 KEIA--GWWRICFWVSIVPAAILCLAMVFCA  229 (302)
Q Consensus       201 ~~~~--g~w~~~~~~~~~~~~~~~~~~~~~p  229 (302)
                      .+..  +.|...|++.++..+++.+...+.+
T Consensus       420 ~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       420 LSQDSKNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             eCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            7654  3488888887777777666655544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.26  E-value=2.5e-10  Score=93.16  Aligned_cols=161  Identities=17%  Similarity=0.122  Sum_probs=117.8

Q ss_pred             hhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc-------
Q 022133           66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-------  138 (302)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-------  138 (302)
                      ..+.++.+.|.+.+.+|++.++.  ..+.++-.+|..+| ++.|.+.|++|++.++.+|.+...++..+..++       
T Consensus        17 t~Y~Fs~yS~~Lk~~l~~sq~~l--~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~   93 (250)
T PF06813_consen   17 TTYTFSAYSPQLKSRLGYSQSQL--NTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPS   93 (250)
T ss_pred             cccchhhhhHHHHHHhCCCHHHH--HHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCc
Confidence            34557778999999999987776  57888888888764 889999999999999999999998888766542       


Q ss_pred             chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHH
Q 022133          139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA  218 (302)
Q Consensus       139 ~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~  218 (302)
                      .+.+.+.+..++.|.+.+...+.......+-|| ++||++.|+.-...++++.+-..+...+.+... -...+.++..+.
T Consensus        94 ~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~-~~fll~la~~~~  171 (250)
T PF06813_consen   94 LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDP-SSFLLFLAVLPA  171 (250)
T ss_pred             cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCCh-HHHHHHHHHHHH
Confidence            345667677777777766666666666668887 579999999988888887665555444444332 345555555666


Q ss_pred             HHHHHHhhccCCC
Q 022133          219 AILCLAMVFCAES  231 (302)
Q Consensus       219 ~~~~~~~~~~pe~  231 (302)
                      ++.++..++++..
T Consensus       172 ~v~l~~~~~vr~~  184 (250)
T PF06813_consen  172 VVCLVAMFFVRPV  184 (250)
T ss_pred             HHHHHHhhheecc
Confidence            6666666665443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.26  E-value=1.4e-10  Score=116.09  Aligned_cols=144  Identities=17%  Similarity=0.116  Sum_probs=115.3

Q ss_pred             hhhhhh-hhhcccCCc-chhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 022133           72 EPLESI-SLDLGFNGN-TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (302)
Q Consensus        72 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~  149 (302)
                      .++|.+ .+.+|.+.. ..  +++.+...++.+++.+++|+++||+++++.+.++.++.+++.+++.+..+.+.++++.+
T Consensus       253 ~~~~~~~~~~~g~s~~~~~--g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (1146)
T PRK08633        253 ANFPAYAKEVLGLDNTFQV--QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFF  330 (1146)
T ss_pred             HhhHHHHHHHhCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            344444 455777655 44  88999999999999999999999999999998888888888888877778888888889


Q ss_pred             HHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHH
Q 022133          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP  217 (302)
Q Consensus       150 ~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~  217 (302)
                      +.|++.++..+...+++.+.+|++.||+++++.+....+|.++++.+++.+......+...+++.+.+
T Consensus       331 ~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        331 LFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV  398 (1146)
T ss_pred             HHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            99999999888889999999999999999999999999998888888776654221144455544433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.24  E-value=4.2e-10  Score=99.97  Aligned_cols=145  Identities=14%  Similarity=0.116  Sum_probs=106.0

Q ss_pred             hhhhh-hhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc-----chhHHHHH
Q 022133           73 PLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----RNLIGMLL  146 (302)
Q Consensus        73 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~  146 (302)
                      ..|.+ .+++|.+..+.  ++......++..++.++.|+++||+|+|+.+.++.++.+++.++..+.     .+...+++
T Consensus       237 ~~p~~~~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  314 (406)
T PRK15402        237 LSPVILISGEQLSSYEY--GLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTA  314 (406)
T ss_pred             HhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHH
Confidence            34444 45567765444  677777777888999999999999999999988888777766655442     34556677


Q ss_pred             HHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHH
Q 022133          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (302)
Q Consensus       147 ~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~  221 (302)
                      ..++.|++.+...+........ .++++||+..+.++....+|..+|+.+++.+.+..+ +....+..++.+++.
T Consensus       315 ~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~  387 (406)
T PRK15402        315 GLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG-NGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc-hHHHHHHHHHHHHHH
Confidence            7888999888776665555443 345899999999999999999999999999988877 344444444444433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.23  E-value=8.8e-10  Score=97.52  Aligned_cols=142  Identities=15%  Similarity=0.016  Sum_probs=107.5

Q ss_pred             hhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhh
Q 022133           74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGT  153 (302)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~  153 (302)
                      .|.+.+++|++.+..  +.......++..++.++.+++.||.+++..+....+..+...++....++.+.+.+..++.|+
T Consensus       240 ~p~~~~~~g~s~~~~--g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~  317 (394)
T PRK10213        240 RPVYMNLAGFGVDGL--TLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGL  317 (394)
T ss_pred             HHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            466777788876655  788888999999999999999999655544443333344444444455667777778889999


Q ss_pred             hhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHH
Q 022133          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (302)
Q Consensus       154 ~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~  219 (302)
                      +.+...+....++.+..| +++++..++......+|..+|+.+++.+.+..| ++..++..++..+
T Consensus       318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g-~~~~~~~~~~~~~  381 (394)
T PRK10213        318 TFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG-LTSPLMLSGTLML  381 (394)
T ss_pred             HHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhhHHHHHHHHHH
Confidence            998888888888888887 556677788778889999999999999998877 6777776654443

>PRK10054 putative transporter; Provisional

Probab=99.23  E-value=1.5e-10  Score=102.50  Aligned_cols=135  Identities=13%  Similarity=0.050  Sum_probs=105.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHhhhhcchhhhHHHHhh
Q 022133           89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-RNLIGMLLGRFVVGTGMGLGPTVAALYVT  167 (302)
Q Consensus        89 ~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~r~~~g~~~~~~~~~~~~~~~  167 (302)
                      ..+.+.+...+.....+++.|.+.||.|+|+.+..+.++.+++.+...+. ++.+.++++.++.|++.+...|....++.
T Consensus       245 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~  324 (395)
T PRK10054        245 VVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLID  324 (395)
T ss_pred             HHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            33666777766667778899999999999999999988888777666654 56666777888999998888888888999


Q ss_pred             hcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHh
Q 022133          168 EVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (302)
Q Consensus       168 e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~  225 (302)
                      +..|++.|++..+..+ ...+|..+||.+++.+.+..| ....|++.+....++++..
T Consensus       325 ~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~  380 (395)
T PRK10054        325 HIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP-PWSLFVILALAIVAAWLLM  380 (395)
T ss_pred             HhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC-hhhHHHHHHHHHHHHHHHH
Confidence            9999999999988755 455899999999999999887 4566666545444444433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.23  E-value=3e-10  Score=100.67  Aligned_cols=151  Identities=11%  Similarity=-0.009  Sum_probs=110.6

Q ss_pred             hhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 022133           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-GVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (302)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~  150 (302)
                      .++|.+.++.+.+...  .+++.+...++...+..+.+++.| |++.++.+..+.++.+++.++++..+++..+.+..++
T Consensus       229 ~~~p~~~~~~~~~~~~--~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l  306 (400)
T PRK11646        229 LMLPIMVNDIAGSPSA--VKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICL  306 (400)
T ss_pred             HhhhhhHHhhcCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4567666665544333  377777777666666666666665 5666667777777777777777777777777777788


Q ss_pred             HhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCc---chHHHHHHhHHHHHHHHHH
Q 022133          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG---WWRICFWVSIVPAAILCLA  224 (302)
Q Consensus       151 ~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g---~w~~~~~~~~~~~~~~~~~  224 (302)
                      .+++.+...+...+++.+..|+++||+.+++++....+|..+||.+++.+.+..+   .....+++.++.+++..+.
T Consensus       307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            8888888888888999999999999999999999999999999999999987642   1234555545555544443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.22  E-value=5.3e-10  Score=101.32  Aligned_cols=112  Identities=9%  Similarity=0.027  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh-----cchhHHHHHHHHHHhhhhcchhhhHHHH
Q 022133           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-----TRNLIGMLLGRFVVGTGMGLGPTVAALY  165 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~r~~~g~~~~~~~~~~~~~  165 (302)
                      +++.+...++.+++.+++++++||+|+|+.+.++.++.+++.+....     ..+.+.+++.-++.|++.+...+...++
T Consensus       269 ~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am  348 (473)
T PRK10429        269 PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIM  348 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666888899999999999999999998888776655544322     2345666677788899999888889999


Q ss_pred             hhhcCC-------CCccchhHhHHHHHHHHHHHHHHHHhhcccc
Q 022133          166 VTEVSP-------PFVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (302)
Q Consensus       166 ~~e~~p-------~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  202 (302)
                      ++|..+       .+..|...+......-+|..+++.+.+.+.+
T Consensus       349 ~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        349 VADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             HhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999955       3334456677788888888888888777654

>PRK09669 putative symporter YagG; Provisional

Probab=99.22  E-value=1.7e-10  Score=103.79  Aligned_cols=170  Identities=13%  Similarity=0.102  Sum_probs=107.9

Q ss_pred             HHHHHHHhhhhccchh-hhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh----hhH-HHHHHHHHHHHHHH
Q 022133           58 LSSFLFGYHLGVVNEP-LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGR-RRAFQLCALPMIIG  131 (302)
Q Consensus        58 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~Gr-r~~~~~~~~~~~i~  131 (302)
                      ++.+..+.....+..+ ...+.+.+|++....  |.+.++..+..++..|+.|+++||    +|| |+.++.+.+..+++
T Consensus        16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~--g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~   93 (444)
T PRK09669         16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIM--GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVV   93 (444)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHH
Confidence            3333333333333444 344566678776554  899999999999999999999999    777 45566676776666


Q ss_pred             HHHHhhcch------hHHHHHHHHHHhhhhcchhhhHHHHhhhcC-CCCccchhHhHHHHHHHHHHHHHHHHhhcccc--
Q 022133          132 ASISATTRN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE--  202 (302)
Q Consensus       132 ~~~~~~~~~------~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~--  202 (302)
                      ..+....++      ...+++..++.+.+.........++.+|+. ++++|.+..++...+..+|..+++.+...+..  
T Consensus        94 ~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~  173 (444)
T PRK09669         94 CLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDIL  173 (444)
T ss_pred             HHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            654444432      344555566667666666666778899998 55889988888777777777666554333221  


Q ss_pred             -----cCcchHHHHHHhHHHHHHHHH-HhhccCC
Q 022133          203 -----IAGWWRICFWVSIVPAAILCL-AMVFCAE  230 (302)
Q Consensus       203 -----~~g~w~~~~~~~~~~~~~~~~-~~~~~pe  230 (302)
                           ..+ |+..+.+.++++++..+ .++..+|
T Consensus       174 ~~~~~~~g-~~~~~~i~~ii~~v~~~~~~~~~~e  206 (444)
T PRK09669        174 GKGDEQKG-YFYAMMVMGLLGVVLFFCCFFMTKE  206 (444)
T ss_pred             CCCchhhh-HHHHHHHHHHHHHHHHHHHhCCeEE
Confidence                 123 67666665555444433 3333444

>PRK09848 glucuronide transporter; Provisional

Probab=99.22  E-value=7.4e-10  Score=99.71  Aligned_cols=111  Identities=17%  Similarity=0.098  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHhhhhcchhhhHHHHhhhc
Q 022133           92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (302)
Q Consensus        92 ~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~  169 (302)
                      +......++.+++.+++++++||+|+|+.+.++.++.+++.+...+.+  +.+.+++..++.|+|.+...+...++.+|.
T Consensus       268 ~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~  347 (448)
T PRK09848        268 LVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADT  347 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444567788999999999999999999999988888777666543  556666777889999999998999999988


Q ss_pred             CCCC-------ccchhHhHHHHHHHHHHHHHHHHhhcccc
Q 022133          170 SPPF-------VRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (302)
Q Consensus       170 ~p~~-------~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  202 (302)
                      .|.+       .+|...++.+....+|..+++.+.+.+.+
T Consensus       348 ~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~  387 (448)
T PRK09848        348 VEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG  387 (448)
T ss_pred             hhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8754       45888899999999999998888776643

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.21  E-value=4.9e-10  Score=98.74  Aligned_cols=175  Identities=20%  Similarity=0.264  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHhhhhccchhhhhhhhhcc-cCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 022133           55 VATLSSFLFGYHLGVVNEPLESISLDLG-FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (302)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~  133 (302)
                      ...+..++.+........+.+.+.++.| .+.+..  +...++..+..++.-.+.+++..|+|.|+++.++.+..++=..
T Consensus       211 ~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~--g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~  288 (400)
T PF03825_consen  211 VFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTI--GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWL  288 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            3444455556666666777777788877 444443  5666777778889999999999999999999999999888777


Q ss_pred             HHhhc-chhHHHHH----HHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHH-HHHHHHHHHHHHhhcccccCcc-
Q 022133          134 ISATT-RNLIGMLL----GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEIAGW-  206 (302)
Q Consensus       134 ~~~~~-~~~~~~~~----~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~g~-  206 (302)
                      +++.. ++.+...+    ...+.|+..+........++.+.+|++.|+++.++++. ..++|..+|..++|++.+..|. 
T Consensus       289 l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~  368 (400)
T PF03825_consen  289 LYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR  368 (400)
T ss_pred             HHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence            77766 44333332    34569999999999999999999999999999999765 6789999999999999987662 


Q ss_pred             ----hHHHHHHhHHHHHHHHHH-hhccCCC
Q 022133          207 ----WRICFWVSIVPAAILCLA-MVFCAES  231 (302)
Q Consensus       207 ----w~~~~~~~~~~~~~~~~~-~~~~pe~  231 (302)
                          |...+.+.++..++..++ +++.+|+
T Consensus       369 ~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  369 GMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence                334444444444443333 3444543

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.20  E-value=1.2e-09  Score=94.31  Aligned_cols=158  Identities=15%  Similarity=0.070  Sum_probs=123.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 022133           44 PSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL  123 (302)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~  123 (302)
                      +..+++|..++...+..+..+++.-.+.+.......-+| +.+..  -|...++++.++...+.+.|+.|++|-|..+++
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~--~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll  114 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAA--DWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL  114 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHH--HHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence            345677777777777777776666556666556666667 33333  599999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc------chhH--HHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHH
Q 022133          124 CALPMIIGASISATT------RNLI--GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLL  195 (302)
Q Consensus       124 ~~~~~~i~~~~~~~~------~~~~--~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~  195 (302)
                      +..+.+++..+-..+      +.++  ....+..+.+.+.-........+..-|||+++|..+..+...+..+|..++.+
T Consensus       115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            999999999876543      2333  55677777777776666666677888999999999999999999999999999


Q ss_pred             HhhcccccC
Q 022133          196 IGIPVKEIA  204 (302)
Q Consensus       196 ~~~~~~~~~  204 (302)
                      +.+.+..+.
T Consensus       195 lppilV~~~  203 (480)
T KOG2563|consen  195 LPPILVPSS  203 (480)
T ss_pred             ccceecCCC
Confidence            988887655

>TIGR00901 2A0125 AmpG-related permease

Probab=99.19  E-value=3.9e-10  Score=98.32  Aligned_cols=121  Identities=18%  Similarity=0.204  Sum_probs=93.3

Q ss_pred             hhhhccchhhhhhhhhcccCCcchhhHHHHHHHH-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc-----
Q 022133           65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCL-GGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----  138 (302)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-----  138 (302)
                      ..........|.+..+.|++.++.  +.+.++.. ++..++.+++|+++||+|||+.++.+.++.+++..+..+.     
T Consensus       223 ~~~~~~~~~~~~~l~~~g~~~~~~--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~  300 (356)
T TIGR00901       223 LGDSAATVLTTLFLLDMGFSKEEI--ALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGH  300 (356)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHH--HHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            333344556666666677766654  66666555 5678999999999999999999988888877766654432     


Q ss_pred             ------chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHH
Q 022133          139 ------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATC  187 (302)
Q Consensus       139 ------~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~  187 (302)
                            ++.+.+..+.++.+++.+...+...+++.|.+|+++||+.+|+++...+
T Consensus       301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       301 HDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             ccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence                  3456677778888999999999999999999999999999999876543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.19  E-value=2.7e-10  Score=103.45  Aligned_cols=138  Identities=17%  Similarity=0.145  Sum_probs=109.7

Q ss_pred             Hhhhhccchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh--c--
Q 022133           64 GYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT--T--  138 (302)
Q Consensus        64 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~--~--  138 (302)
                      +........++|.+.++ +|.+..+.  ++......++..++.++.|++.||+|||+.+.++..+.+++..++.+  .  
T Consensus       268 ~~~~~~~~~~~p~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~  345 (485)
T TIGR00711       268 GLGLYGSFYLLPLYLQQVLGYTALQA--GLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPD  345 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            33333344556666544 67665554  88888889999999999999999999999999998888888877662  2  


Q ss_pred             chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccccc
Q 022133          139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (302)
Q Consensus       139 ~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~  203 (302)
                      .+...+....++.|++.+...+.......+..|+++|+.+.++++....+|..+|+.+.+.+.+.
T Consensus       346 ~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       346 TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666788899999888777777788889999999999999999999999999998877653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.18  E-value=3.3e-10  Score=113.23  Aligned_cols=146  Identities=17%  Similarity=0.068  Sum_probs=110.4

Q ss_pred             ccchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc---------
Q 022133           69 VVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT---------  138 (302)
Q Consensus        69 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~---------  138 (302)
                      .+..++|.+..+ +|.+....  |++.+.+.++.++|.++.|+++|+.++++.+..+.++.+++.+.+.+.         
T Consensus       243 ~~~~~~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  320 (1140)
T PRK06814        243 VVLSQLPLLAKETLGGDENVA--TLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPA  320 (1140)
T ss_pred             HHHHHhHHHHHHHcCCchHHH--HHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccc
Confidence            344456665554 57665544  899999999999999999999998887776666655555544433332         


Q ss_pred             -----------chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcch
Q 022133          139 -----------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (302)
Q Consensus       139 -----------~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w  207 (302)
                                 .+.+.++++.++.|++.+...+...+++.+.+|++.||+++|+.++...+|..+++++++.+......+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~  400 (1140)
T PRK06814        321 QLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSI  400 (1140)
T ss_pred             cccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence                       556667778888999999988889999999999999999999999999999999999988876433225


Q ss_pred             HHHHHHhHH
Q 022133          208 RICFWVSIV  216 (302)
Q Consensus       208 ~~~~~~~~~  216 (302)
                      ...+++.++
T Consensus       401 ~~~~~~~~~  409 (1140)
T PRK06814        401 PWIILFIAL  409 (1140)
T ss_pred             HHHHHHHHH
Confidence            555554433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.18  E-value=1e-09  Score=96.72  Aligned_cols=147  Identities=13%  Similarity=0.071  Sum_probs=102.7

Q ss_pred             hhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHhh
Q 022133           75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA-TTRNLIGMLLGRFVVGT  153 (302)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~r~~~g~  153 (302)
                      |.+.+..|.+.++.  +++.+...++.+++.++.|++.||+|+|+.+..+..+.+++.++.. ..++.+...+..++.++
T Consensus       224 ~~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  301 (382)
T PRK10091        224 PYMMFISGFSETSM--TFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCA  301 (382)
T ss_pred             HHHHHhcCCCHHHH--HHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34445567766554  7888999999999999999999999999999888887777765544 34444555555556666


Q ss_pred             hhcchhhhHH-HHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHh
Q 022133          154 GMGLGPTVAA-LYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (302)
Q Consensus       154 ~~~~~~~~~~-~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~  225 (302)
                      +.+...+... ....+..|.+.++.+  ..+....+|..+||.+++.+.+..+.|+..+.+.++.+++.+...
T Consensus       302 g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (382)
T PRK10091        302 GLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL  372 (382)
T ss_pred             HHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence            5544433333 344454555555443  346678899999999999998865448888888766666554443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.18  E-value=3e-10  Score=101.06  Aligned_cols=155  Identities=14%  Similarity=-0.005  Sum_probs=102.8

Q ss_pred             cchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh-hc-----chhHH
Q 022133           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA-TT-----RNLIG  143 (302)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~-~~-----~~~~~  143 (302)
                      ++.++|.+.++ .++....  .....+..+...++.+++|+++||+|+|+++.++.++.+++..... ..     .++..
T Consensus       271 ~s~~lp~~~~~-~~~~~~~--l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~  347 (462)
T PRK15034        271 FSAGFAMLAKT-QFPDVNI--LRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIA  347 (462)
T ss_pred             HHHHHHHHHHH-HcChHHH--HHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence            34456655554 2322221  2223344567788999999999999999999988887766654321 11     24555


Q ss_pred             HHHHHHHHhhhhcchhhhHHHHhhhcCCC---------------------CccchhHhHHHHHHHHHHHHHHHHhhcccc
Q 022133          144 MLLGRFVVGTGMGLGPTVAALYVTEVSPP---------------------FVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (302)
Q Consensus       144 ~~~~r~~~g~~~~~~~~~~~~~~~e~~p~---------------------~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  202 (302)
                      +.+..+...++.|......+.++...||.                     ++-|...|+......+|+++.|.+.+...+
T Consensus       348 ~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~  427 (462)
T PRK15034        348 FYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLN  427 (462)
T ss_pred             HHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHH
Confidence            55555555566666666777788888874                     145567888888889999999988777777


Q ss_pred             cCcchHHHHHHhHHHHHHHHHHhhc
Q 022133          203 IAGWWRICFWVSIVPAAILCLAMVF  227 (302)
Q Consensus       203 ~~g~w~~~~~~~~~~~~~~~~~~~~  227 (302)
                      ..|.+...|+...+..+++++..++
T Consensus       428 ~~g~~~~~~~~~~~~~~~~~~~~w~  452 (462)
T PRK15034        428 MTGSPVGAMKVFLIFYIVCVLLTWL  452 (462)
T ss_pred             HcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            7666777887766665555444433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.18  E-value=4.2e-10  Score=91.45  Aligned_cols=149  Identities=18%  Similarity=0.105  Sum_probs=109.6

Q ss_pred             hhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH-HHHhhcchhHHHHHHHHHHhhh
Q 022133           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA-SISATTRNLIGMLLGRFVVGTG  154 (302)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~r~~~g~~  154 (302)
                      .+.+.+|+|..++  +-+.+......++.+++.|.++||+|++...+.+..+..+.. ....+  +.+.-.+...+.|+.
T Consensus       290 fF~~rfGlS~~~a--~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLs  365 (459)
T KOG4686|consen  290 FFQKRFGLSAVSA--GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLS  365 (459)
T ss_pred             HHHHhhCCChhhc--cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhh
Confidence            4677899987766  677787778888999999999999999988877766544433 22222  222334556778888


Q ss_pred             hcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchH--HHHHH-hHHHHHHHHHHhhcc
Q 022133          155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR--ICFWV-SIVPAAILCLAMVFC  228 (302)
Q Consensus       155 ~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~--~~~~~-~~~~~~~~~~~~~~~  228 (302)
                      ....-...+..++-+.|.++-|++.|+.+...++|..+.|++++.+.+..|.+.  -.|++ ...+++....+.+.+
T Consensus       366 ysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  366 YSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             HHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            877766678889999999999999999999999999999999999998877432  23333 334444444444443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.17  E-value=2.2e-10  Score=98.08  Aligned_cols=155  Identities=15%  Similarity=0.151  Sum_probs=116.7

Q ss_pred             cchhhhh-hhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc-------chh
Q 022133           70 VNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-------RNL  141 (302)
Q Consensus        70 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-------~~~  141 (302)
                      ++.++|. +..+++.+..++  |.....+.+...+..+++|+++||+|.++++.+....++++..+..+.       .+.
T Consensus       237 fs~~l~~~~~~~fg~~~~~A--g~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~  314 (417)
T COG2223         237 FSAYLPMYLVTQFGLSPVTA--GLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSF  314 (417)
T ss_pred             HHHHHHHHHHHhcCCChhhH--HHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcch
Confidence            4455554 456678776665  788888989999999999999999999999999999988888777654       334


Q ss_pred             HHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHH
Q 022133          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (302)
Q Consensus       142 ~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~  221 (302)
                      ...++..+..+++.|......+.++...+|. +-|...|+......+|++.-|...+...+..|.+...|++.....+++
T Consensus       315 ~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a  393 (417)
T COG2223         315 VVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVA  393 (417)
T ss_pred             HHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            4444444444444444445555667777765 678889999999999999999999988888887888888877777766


Q ss_pred             HHHhhc
Q 022133          222 CLAMVF  227 (302)
Q Consensus       222 ~~~~~~  227 (302)
                      .+..+.
T Consensus       394 ~v~~~~  399 (417)
T COG2223         394 LVLTWA  399 (417)
T ss_pred             HHHHHH
Confidence            665543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.17  E-value=3.5e-09  Score=93.34  Aligned_cols=171  Identities=17%  Similarity=0.217  Sum_probs=116.7

Q ss_pred             HHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHHHHHHHHHh
Q 022133           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-RRRAFQLCALPMIIGASISA  136 (302)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-rr~~~~~~~~~~~i~~~~~~  136 (302)
                      ...++.....+...++++.+.++.|++..+.  |.+.++..+..+++++++|.++||.+ +|+.+.+..++.++......
T Consensus         9 ~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qI--G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~   86 (400)
T PF03825_consen    9 LMYFLYFFAYGAFLPYLPLYLESRGFSGTQI--GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3344445556667788899999999877766  99999999999999999999999986 57777777777777666666


Q ss_pred             hcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHH-hhcccccCc--chHHHHHH
Q 022133          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI-GIPVKEIAG--WWRICFWV  213 (302)
Q Consensus       137 ~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~g--~w~~~~~~  213 (302)
                      ..++++.+++..++..+......|...++..+...  +++.-.|-.....++|-.++... ++.+....+  .....+++
T Consensus        87 ~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i  164 (400)
T PF03825_consen   87 FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYI  164 (400)
T ss_pred             HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHH
Confidence            77888888888888888877777888787777764  34444555555666665555332 122222111  12345555


Q ss_pred             hHHHHHHHHHHhhccCCCh
Q 022133          214 SIVPAAILCLAMVFCAESP  232 (302)
Q Consensus       214 ~~~~~~~~~~~~~~~pe~~  232 (302)
                      .+...++.....+.+|++|
T Consensus       165 ~~~~~~ll~~~~l~lp~~~  183 (400)
T PF03825_consen  165 AAILSLLLAGFALFLPKTP  183 (400)
T ss_pred             HHHHHHHHHHHHHhCCCCc
Confidence            5555555555556678764

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.17  E-value=1.7e-09  Score=95.98  Aligned_cols=148  Identities=16%  Similarity=0.127  Sum_probs=100.8

Q ss_pred             hhhhhhcccCCcchhhHHHHHHHH-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH---hhc-chhHHHHHHH-
Q 022133           75 ESISLDLGFNGNTLAEGLVVSMCL-GGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS---ATT-RNLIGMLLGR-  148 (302)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~~~~~r-  148 (302)
                      +.+.++.|++.++.  +++..... ++.+++.+++|++.||+|||+.+..+.++.++..+..   +.. ++.+.+++.. 
T Consensus       234 ~~l~~~~G~~~~~~--g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  311 (402)
T PRK11902        234 TFLIRGAGFSAGEV--GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIG  311 (402)
T ss_pred             HHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            34556677765544  67765544 4578999999999999999998877776665554333   333 3444444443 


Q ss_pred             ---HHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHh
Q 022133          149 ---FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (302)
Q Consensus       149 ---~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~  225 (302)
                         ++.|++.+...+....++.+.+|.+.    .++++...++|..+++.+++.+.+..| |+..|.+.+++++++++..
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        312 IENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHH
Confidence               34555566666666777777777554    455555566777766678888889888 8999999888877776665


Q ss_pred             hccC
Q 022133          226 VFCA  229 (302)
Q Consensus       226 ~~~p  229 (302)
                      +..+
T Consensus       387 ~~~~  390 (402)
T PRK11902        387 WLMR  390 (402)
T ss_pred             HHHh
Confidence            4443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.17  E-value=3e-09  Score=93.49  Aligned_cols=135  Identities=18%  Similarity=0.276  Sum_probs=96.3

Q ss_pred             hhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc-----chhHHHHH
Q 022133           73 PLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----RNLIGMLL  146 (302)
Q Consensus        73 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~  146 (302)
                      +.|.+. +++|.+..+.  +++.+...++..++.++.|++.||+|||+.+..+..+..++..++...     ++...+++
T Consensus       228 ~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (385)
T TIGR00710       228 GAPFVYIDIMGVSPSVF--GLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIG  305 (385)
T ss_pred             cChHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            344443 4667665544  788888899999999999999999999999988877777666555432     23444555


Q ss_pred             HHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHH-HHHHHHHHHHhhcccccCcchHHHHH
Q 022133          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIAT-CLGLMGSLLIGIPVKEIAGWWRICFW  212 (302)
Q Consensus       147 ~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~g~w~~~~~  212 (302)
                      ..++.|++.+...+.......|.+| +.|+++.++++... ..|.+.++.++ .+.+..+ |...+.
T Consensus       306 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~-~~~~~~  369 (385)
T TIGR00710       306 PMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNTA-WPMSLS  369 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccCh-HHHHHH
Confidence            6778888888888888888889887 67999999977655 45666666665 4443333 444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.14  E-value=4.3e-10  Score=101.90  Aligned_cols=173  Identities=12%  Similarity=0.076  Sum_probs=110.5

Q ss_pred             HHHHHHHHHhhhhccchhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhh----hhhH-HHHHHHHHHHHH
Q 022133           56 ATLSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGR-RRAFQLCALPMI  129 (302)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~Gr-r~~~~~~~~~~~  129 (302)
                      -.++.+..+...+.+.++++.+. +.+|++...  +|.+..+.-+..++..|+.|+++|    |+|| |+.++++.+..+
T Consensus        11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~--vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~   88 (473)
T PRK10429         11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGL--VGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANS   88 (473)
T ss_pred             hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHH--HHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHH
Confidence            33444455555555666655544 445776544  489999999999999999999999    5698 666677777777


Q ss_pred             HHHHHHhhcch------hHHHHHHHHHHhhhhcchhhhHHHHhhhcC-CCCccchhHhHHHHHHHHHHHHHHHHhhcccc
Q 022133          130 IGASISATTRN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (302)
Q Consensus       130 i~~~~~~~~~~------~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  202 (302)
                      ++..++...++      +..+++..++.+++.........++..|+. ++++|.+..++...+..+|+++.+.+...+..
T Consensus        89 i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~  168 (473)
T PRK10429         89 VVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVN  168 (473)
T ss_pred             HHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77655543331      234455566677777777777888999998 58999998888666666665554444332211


Q ss_pred             -------cCcchHHHHHHhHHHHHHHH-HHhhccCCC
Q 022133          203 -------IAGWWRICFWVSIVPAAILC-LAMVFCAES  231 (302)
Q Consensus       203 -------~~g~w~~~~~~~~~~~~~~~-~~~~~~pe~  231 (302)
                             ..+ |+...++.++..++.. +.++..+|.
T Consensus       169 ~~g~~~~~~g-~~~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        169 YVGGGDRGFG-FQMFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             HhCCCchhhh-HHHHHHHHHHHHHHHHHHHHcCceec
Confidence                   112 5555555444444333 333345554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.13  E-value=5.1e-09  Score=88.61  Aligned_cols=158  Identities=18%  Similarity=0.190  Sum_probs=107.0

Q ss_pred             chhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 022133           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (302)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~  150 (302)
                      ++++-.+.+++|++.++.  +.+....+....+..++.|.++||+|||+.-++..++.+++++. -..+++..++++|++
T Consensus        54 GpY~Y~LY~~yg~~~~qI--a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvl  130 (354)
T PF05631_consen   54 GPYLYALYESYGFSEHQI--AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVL  130 (354)
T ss_pred             cchhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHH
Confidence            444445567789887766  68888888888999999999999999999999988988888864 456889999999999


Q ss_pred             HhhhhcchhhhHHHH-hhhc----CCCCccchhHhHHH-HHHHHHHHHHHHHhhcccccCcc-hHHHHHHhHHHHHHHHH
Q 022133          151 VGTGMGLGPTVAALY-VTEV----SPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAGW-WRICFWVSIVPAAILCL  223 (302)
Q Consensus       151 ~g~~~~~~~~~~~~~-~~e~----~p~~~R~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~g~-w~~~~~~~~~~~~~~~~  223 (302)
                      .|++....++.--+. +.|.    +|.+..+...+... ..+++-.+.+.+++-.+.+..+. -..+|.....+.+++.+
T Consensus       131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~  210 (354)
T PF05631_consen  131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAV  210 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence            999999888877665 4454    23333333333222 22333344445555555443331 36677776666555544


Q ss_pred             Hh-hccCCC
Q 022133          224 AM-VFCAES  231 (302)
Q Consensus       224 ~~-~~~pe~  231 (302)
                      +. ...+|+
T Consensus       211 ~I~~~W~EN  219 (354)
T PF05631_consen  211 LILKTWPEN  219 (354)
T ss_pred             HHHhccccc
Confidence            43 334565

>PRK09669 putative symporter YagG; Provisional

Probab=99.12  E-value=3.2e-09  Score=95.46  Aligned_cols=114  Identities=15%  Similarity=0.065  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH-hh-cchhHHHHHHHHHHhhhhcchhhhHHHHhhh
Q 022133           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS-AT-TRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~-~~-~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e  168 (302)
                      +.+.....++.+++.+++++++||+|+|+.+..+.++.++..... .. .++.+.+++..++.|++.+...+...++++|
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad  346 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD  346 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445556667778889999999999999999988877665443322 22 3466667777889999999999999999999


Q ss_pred             cCC-------CCccchhHhHHHHHHHHHHHHHHHHhhcccccC
Q 022133          169 VSP-------PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (302)
Q Consensus       169 ~~p-------~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  204 (302)
                      ..+       .+..|...+..+.+..+|..+++.+++.+.+..
T Consensus       347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~  389 (444)
T PRK09669        347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV  389 (444)
T ss_pred             hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            886       233455677788888889888888888765543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.12  E-value=4.3e-10  Score=97.47  Aligned_cols=128  Identities=26%  Similarity=0.324  Sum_probs=103.3

Q ss_pred             hhhccchhhhhh-hhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc---chh
Q 022133           66 HLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT---RNL  141 (302)
Q Consensus        66 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~---~~~  141 (302)
                      .......+.|.+ .+++|.+ +....+...+...++..++.++.|+++||+|+|+.+........+..+...+.   .+.
T Consensus       221 ~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (352)
T PF07690_consen  221 VFSGFSFFLPLYLQEVLGFS-GPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSP  299 (352)
T ss_dssp             HHHHHHHHHHHHCCHHHHCC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHH
T ss_pred             HHHHhhcccchhhhhccCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            333456667765 7777877 22334788888999999999999999999998888877777776666655543   345


Q ss_pred             HHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHH
Q 022133          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL  194 (302)
Q Consensus       142 ~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~  194 (302)
                      ...++..++.|++.+...+....++.|.+|+++||++.++.+....+|..++|
T Consensus       300 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  300 VWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            66667788899999999999999999999999999999999999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.12  E-value=2.5e-10  Score=102.12  Aligned_cols=155  Identities=17%  Similarity=0.216  Sum_probs=110.8

Q ss_pred             hhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHH-HHHHHHHHHHHHHHhhc-c-------h
Q 022133           74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGRRRAF-QLCALPMIIGASISATT-R-------N  140 (302)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~Grr~~~-~~~~~~~~i~~~~~~~~-~-------~  140 (302)
                      .+.+.+..|++....  |.+..+.-+..++..|+.|.++|    |+|||+.. ++|.+..+++..++... +       .
T Consensus        25 ~~f~~~~~gl~~~~~--g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   25 LYFYTDVLGLSPALA--GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHcCCCHHHH--HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            444555567765544  88888888889999999999999    89976655 56777777777766654 3       1


Q ss_pred             hHHHHHHHHHHhhhhcchhhhHHHHhhhcCC-CCccchhHhHHHHHHHHHHHHHHHHhhcccccCc------chHHHHHH
Q 022133          141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG------WWRICFWV  213 (302)
Q Consensus       141 ~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g------~w~~~~~~  213 (302)
                      ...+.+..++..++.........++.+|+.+ +++|.+..+....+..+|.++...+.+.+.+..+      .|++..++
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            2334666777788888888888899999998 4789999999888888888766666665543222      37777777


Q ss_pred             hHHHHHHHHHH-hhccCC
Q 022133          214 SIVPAAILCLA-MVFCAE  230 (302)
Q Consensus       214 ~~~~~~~~~~~-~~~~pe  230 (302)
                      .+++.++..+. .+..+|
T Consensus       183 ~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHhhhhhheeee
Confidence            66665554443 344555

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.10  E-value=1.2e-09  Score=99.69  Aligned_cols=131  Identities=11%  Similarity=-0.006  Sum_probs=105.8

Q ss_pred             cchhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh---cchhHHHH
Q 022133           70 VNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT---TRNLIGML  145 (302)
Q Consensus        70 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~~~  145 (302)
                      ...+.|.+. ...|.+..+.  |.......++..++.++.|++.||+|+|+.+..+.++.+++.+++..   .++.+...
T Consensus       278 ~~~~~~~~lq~v~g~s~~~a--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  355 (495)
T PRK14995        278 FELLMAQELQFVHGLSPLEA--GMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAW  355 (495)
T ss_pred             HHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence            334555444 4467665555  88888899999999999999999999999998888887777655443   23455556


Q ss_pred             HHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccc
Q 022133          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (302)
Q Consensus       146 ~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  202 (302)
                      +..++.|++.|...+.....+.+..|+++++.+.++++....+|..+|+.+.+.+.+
T Consensus       356 ~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        356 GLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678899999999888888888999999999999999999999999999998887654

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.08  E-value=1.6e-09  Score=94.39  Aligned_cols=142  Identities=14%  Similarity=0.075  Sum_probs=118.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhh
Q 022133           89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (302)
Q Consensus        89 ~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e  168 (302)
                      ..|.+.+...+..++.-.+..++.+|+|.|+.++++..++++=.++++++++.+.+.+.+.+.|+..+........|+++
T Consensus       260 ~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~  339 (412)
T PF01306_consen  260 MYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITA  339 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34889999999999999999999999999999999999999998999999999999999999999999999999999999


Q ss_pred             cCCCCccchhHhH-HHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHH-HHHHhhccCCC
Q 022133          169 VSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI-LCLAMVFCAES  231 (302)
Q Consensus       169 ~~p~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~-~~~~~~~~pe~  231 (302)
                      .+|++..++...+ .+.+..+|..+.+.++|.+.++.| .+..|++.+.+.++ .++..+.++++
T Consensus       340 ~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  340 HFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             hCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheeeecCC
Confidence            9999998888888 578899999999999999999998 67777666555554 44455556543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10133 L-fucose transporter; Provisional

Probab=99.08  E-value=4.8e-09  Score=94.08  Aligned_cols=137  Identities=15%  Similarity=0.022  Sum_probs=103.0

Q ss_pred             hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcch
Q 022133           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLG  158 (302)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~  158 (302)
                      +.+|.+....  ++....+.++.+++.++.+++.||+|||+++..+.++.+++.++..+.++.. .++...+.|++.+..
T Consensus       288 ~~~g~s~~~a--g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i  364 (438)
T PRK10133        288 EIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQ  364 (438)
T ss_pred             hcCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHH
Confidence            3467766655  8999999999999999999999999999999888877776666655555532 245567899999999


Q ss_pred             hhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHH
Q 022133          159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (302)
Q Consensus       159 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~  220 (302)
                      +|...+...+.+|++ .+.+.++... ..+|..++|.+.+.+.+..|.-+..|++..+..+.
T Consensus       365 ~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~  424 (438)
T PRK10133        365 YPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV  424 (438)
T ss_pred             HHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            999999999998764 5677777654 44677778788888777665246666654444333

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.07  E-value=2.7e-09  Score=95.53  Aligned_cols=145  Identities=14%  Similarity=0.095  Sum_probs=111.7

Q ss_pred             HHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 022133           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (302)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~  135 (302)
                      ..+..++........+...+++.++. +..+. ..+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++.
T Consensus       230 l~~~~~~~~~~~~~~~~~~~y~~~~v-l~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~  307 (428)
T PF13347_consen  230 LLLAFFLQWLAFALMNTFLPYYFTYV-LGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLL  307 (428)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHH-hcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHH
Confidence            33444444444545555555555542 22222 23677888899999999999999999999999999999999988887


Q ss_pred             hhcc--hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCC-------CccchhHhHHHHHHHHHHHHHHHHhhcccc
Q 022133          136 ATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP-------FVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (302)
Q Consensus       136 ~~~~--~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~-------~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  202 (302)
                      .+.+  +.+.+++..++.|++.+...+...++++|..+.       +..|...|+.+....+|..+++.+.+.+.+
T Consensus       308 ~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~  383 (428)
T PF13347_consen  308 FFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA  383 (428)
T ss_pred             HHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            7765  889999999999999999999999999998873       445777888888888888888887776644

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.05  E-value=1.4e-08  Score=89.63  Aligned_cols=134  Identities=15%  Similarity=0.158  Sum_probs=98.8

Q ss_pred             hhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcc--hhHHH
Q 022133           67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGM  144 (302)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~  144 (302)
                      .+..+....++. +++++.++....+.......+.+++.+++..+++|+|+|+++.++.++.+++.++..+.+  +...+
T Consensus       252 ~~i~~s~~~yy~-~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~  330 (467)
T COG2211         252 FNIRGSIMVYYV-TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLI  330 (467)
T ss_pred             HHHHhhhhheeE-EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHH
Confidence            333333333333 356667776656777777777778899999999999999999999999999998877765  67778


Q ss_pred             HHHHHHHhhhhcchhhhHHHHhhhcCC-----C--CccchhHhHHHHHHHHHHHHHHHHhhccc
Q 022133          145 LLGRFVVGTGMGLGPTVAALYVTEVSP-----P--FVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (302)
Q Consensus       145 ~~~r~~~g~~~~~~~~~~~~~~~e~~p-----~--~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  201 (302)
                      ++..++.+++.+...+..+++++|...     +  +.-|...+.+..+.=+|..++..+.+++.
T Consensus       331 ~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L  394 (467)
T COG2211         331 VVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL  394 (467)
T ss_pred             HHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888899999999999999999987653     2  23344555566666667666665555543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.03  E-value=9.9e-09  Score=90.82  Aligned_cols=138  Identities=13%  Similarity=0.037  Sum_probs=102.5

Q ss_pred             hhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcc
Q 022133           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGL  157 (302)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~  157 (302)
                      .+.+|.+..+.  |++.+...++..+++++.+++.||.++|+.+..+.. .++.....++.++++..++..++.|++.+.
T Consensus       233 ~~~lg~s~~~~--G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~  309 (393)
T PRK11195        233 PVALGITLNQP--AYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGF  309 (393)
T ss_pred             HHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence            34467666554  899999999999999999999999999988877753 344444445566666666777789998888


Q ss_pred             hhhhHHHHhhhcCCCCc-cchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHH
Q 022133          158 GPTVAALYVTEVSPPFV-RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (302)
Q Consensus       158 ~~~~~~~~~~e~~p~~~-R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~  220 (302)
                      ..+...+.+.+..|++. +|++.++.+....+|..++..+.+.+. ..| -+..+++.++..++
T Consensus       310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~  371 (393)
T PRK11195        310 FVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV-KLG-VPVVAVIVGFGLLV  371 (393)
T ss_pred             hhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH-HcC-CCHHHHHHHHHHHH
Confidence            87777888888766654 799999999999999999998888653 444 34555444333333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.02  E-value=3.3e-08  Score=86.80  Aligned_cols=120  Identities=11%  Similarity=0.104  Sum_probs=82.0

Q ss_pred             hhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh---h-cchhHHHHHHHHHHh
Q 022133           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA---T-TRNLIGMLLGRFVVG  152 (302)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~---~-~~~~~~~~~~r~~~g  152 (302)
                      +.+.+|.+..+.  ++..+...++.+++.++.|++.||+|||+.+..+..+..+..+...   . ..+.+.+.++..+.+
T Consensus       221 ~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (377)
T PRK11102        221 YIELNGVSPQNF--GYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFV  298 (377)
T ss_pred             HHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            445567765544  8888999999999999999999999999999888776544333221   1 123443444444444


Q ss_pred             hhhcchhhhHHHHhhhcCCCCccchhHhHHHH-HHHHHHHHHHHHhhc
Q 022133          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQI-ATCLGLMGSLLIGIP  199 (302)
Q Consensus       153 ~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~-~~~~g~~~~~~~~~~  199 (302)
                      .+.+........++.|..| +.|+++.++++. ...+|..+++++++.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        299 GCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4445555555566778776 789999998654 456778888877654

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.99  E-value=5.8e-11  Score=108.15  Aligned_cols=173  Identities=20%  Similarity=0.265  Sum_probs=3.0

Q ss_pred             HHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 022133           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (302)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~  136 (302)
                      ++..+.+....+.+...++.+.+.|+++..+.  |++.+.+-++..+..++..++.+|..|-+.+-+|.+++++++++++
T Consensus         9 ~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~--G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~   86 (539)
T PF03137_consen    9 CLLGLFQMMVSGYVNSSLTTIERRFGLSSSQS--GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA   86 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence            33444445556667777888999999988877  9999999999999999999999998777788888889999888776


Q ss_pred             hcc--------------------------------------------------hhHHHHHHHHHHhhhhcchhhhHHHHh
Q 022133          137 TTR--------------------------------------------------NLIGMLLGRFVVGTGMGLGPTVAALYV  166 (302)
Q Consensus       137 ~~~--------------------------------------------------~~~~~~~~r~~~g~~~~~~~~~~~~~~  166 (302)
                      +-+                                                  -+..++++.++.|+|....+++..+|+
T Consensus        87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi  166 (539)
T PF03137_consen   87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI  166 (539)
T ss_dssp             -----------------------------------------------------------------SSS------------
T ss_pred             ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence            410                                                  034567889999999999999999999


Q ss_pred             hhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC---------------------cchHHHHHHhHHHHHHHHHHh
Q 022133          167 TEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA---------------------GWWRICFWVSIVPAAILCLAM  225 (302)
Q Consensus       167 ~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------------------g~w~~~~~~~~~~~~~~~~~~  225 (302)
                      -|-.+++.-+..+|++.....+|.++|.++++.+...+                     |.|..-|++.++..++..+.+
T Consensus       167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl  246 (539)
T PF03137_consen  167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL  246 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888765321                     225455555555555555556


Q ss_pred             hccCCC
Q 022133          226 VFCAES  231 (302)
Q Consensus       226 ~~~pe~  231 (302)
                      +++|+.
T Consensus       247 ~~FPk~  252 (539)
T PF03137_consen  247 FFFPKK  252 (539)
T ss_dssp             ------
T ss_pred             HcCCcc
Confidence            666654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.99  E-value=2.1e-08  Score=89.12  Aligned_cols=145  Identities=8%  Similarity=-0.097  Sum_probs=104.2

Q ss_pred             cchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 022133           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (302)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~  149 (302)
                      ...+++.+.++.+.+.+....+...+.+..+..+|.++++++.||+++|+++.++.++.++.+++....++... .++..
T Consensus       251 ~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~  329 (410)
T TIGR00885       251 CWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLT  329 (410)
T ss_pred             HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHH
Confidence            34556666555443333322244556666778899999999999999999998988888888888777766544 56677


Q ss_pred             HHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC-----cchHHHHHHhHHH
Q 022133          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA-----GWWRICFWVSIVP  217 (302)
Q Consensus       150 ~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----g~w~~~~~~~~~~  217 (302)
                      +.|++.+..+|.......+..+++.+..+.++...  .+|+.+.|.+.+.+.+..     |..+..|++..++
T Consensus       330 ~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~  400 (410)
T TIGR00885       330 LCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC  400 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence            88888888899999999999987765444444333  389999999999998843     2256666654333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11043 putative transporter; Provisional

Probab=98.98  E-value=7.5e-08  Score=85.38  Aligned_cols=130  Identities=11%  Similarity=0.024  Sum_probs=94.2

Q ss_pred             hhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH---hh--cchhHHHHH
Q 022133           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS---AT--TRNLIGMLL  146 (302)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~---~~--~~~~~~~~~  146 (302)
                      .+.|.+.++.|.+..+.  ++......++..++.++.+++.||+|+|+.+....++.+++.+.+   ..  .++...+++
T Consensus       224 ~~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (401)
T PRK11043        224 TGSPFILEQMGYSPADI--GLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLI  301 (401)
T ss_pred             HHhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence            34566667777765544  777777778888999999999999999987766555444433322   12  345555556


Q ss_pred             HHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC
Q 022133          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (302)
Q Consensus       147 ~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  204 (302)
                      ...+.|++.+..++.......+..| ++||++.++++.....+...++.+.+.+.+..
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~  358 (401)
T PRK11043        302 PFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTP  358 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            6777888888888888777777776 57999999998887777777777777776543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.98  E-value=1.3e-08  Score=90.03  Aligned_cols=122  Identities=12%  Similarity=0.149  Sum_probs=78.8

Q ss_pred             hhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhc
Q 022133           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG  156 (302)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~  156 (302)
                      +.+++|.+..+.  +...+...++.+++.++.+++.||+|||+.++++.++..++.+...+.++....+....+.+.+.+
T Consensus       230 ~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  307 (392)
T PRK10473        230 LMEQMGFSRGEY--AIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFS  307 (392)
T ss_pred             HHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567765544  788888889999999999999999999999999988888877776665554443444444444444


Q ss_pred             chhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCc
Q 022133          157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (302)
Q Consensus       157 ~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  205 (302)
                      ...+.  .+..+..|.++|+   +.......++..+++.+++.+.+..|
T Consensus       308 ~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g  351 (392)
T PRK10473        308 VGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLG  351 (392)
T ss_pred             HHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33332  3445555655554   33333444555555666655555444

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.97  E-value=1.5e-08  Score=90.69  Aligned_cols=174  Identities=14%  Similarity=0.072  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHhhhhccchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhH---------HHHH
Q 022133           52 HVLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR---------RRAF  121 (302)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Gr---------r~~~  121 (302)
                      .++.+.++.+...+....+..++|.+.++ +|++..+.  |+..++..+...+..+++|.++||.-+         |..-
T Consensus       259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~--G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn  336 (466)
T KOG2532|consen  259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRET--GFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFN  336 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHH
Confidence            46677778888888888888899987765 67777766  899999999999999999999998754         3333


Q ss_pred             HHHHHHHHHHHHHHhhcch-hHHHHHHHHHHhhhhcchhhhHH-HHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhc
Q 022133          122 QLCALPMIIGASISATTRN-LIGMLLGRFVVGTGMGLGPTVAA-LYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (302)
Q Consensus       122 ~~~~~~~~i~~~~~~~~~~-~~~~~~~r~~~g~~~~~~~~~~~-~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~  199 (302)
                      .++..+.+++.+..++.++ ...+.+..+..+++..+...... .-..+. .+++-+..+|+.+....+..+++|.+.+.
T Consensus       337 ~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~  415 (466)
T KOG2532|consen  337 TIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGI  415 (466)
T ss_pred             hHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheee
Confidence            5555666666666666542 11112222222222222222221 112222 56778899999999999999999999999


Q ss_pred             ccccC--cchHHHHHHhHHHHHHHHHHhhcc
Q 022133          200 VKEIA--GWWRICFWVSIVPAAILCLAMVFC  228 (302)
Q Consensus       200 ~~~~~--g~w~~~~~~~~~~~~~~~~~~~~~  228 (302)
                      +....  ..|+.+|++.++..++..+.+.+.
T Consensus       416 ~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  416 IVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             EeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            88522  249999999888877766555443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.95  E-value=7e-09  Score=90.46  Aligned_cols=167  Identities=20%  Similarity=0.310  Sum_probs=102.8

Q ss_pred             HHHHHHHHHhhhhccchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH--HHHH
Q 022133           56 ATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM--IIGA  132 (302)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~--~i~~  132 (302)
                      .....+...+..+...++.+.+.++ .|++.++.  |.+.++..+...+.+++.|.++||+|.|+-++....+.  ..+.
T Consensus        12 ~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~i--G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~p   89 (412)
T PF01306_consen   12 LSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEI--GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGP   89 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHH--HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence            3334444444566677777777765 78877766  99999999999999999999999999655544333222  2222


Q ss_pred             H-HHhhc----chh-HHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcc
Q 022133          133 S-ISATT----RNL-IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW  206 (302)
Q Consensus       133 ~-~~~~~----~~~-~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~  206 (302)
                      . ...+.    .|. ...+++-+..|++.....|+.-+++..+.  +..+.=.|-...+.++|.+++..++|.+.+..  
T Consensus        90 ff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~--  165 (412)
T PF01306_consen   90 FFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNIN--  165 (412)
T ss_dssp             HHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeC--
Confidence            2 22222    222 23334444455555555566666665553  44455566677889999999999999887643  


Q ss_pred             hHHHHHHhHHHHHHHHHHhhcc
Q 022133          207 WRICFWVSIVPAAILCLAMVFC  228 (302)
Q Consensus       207 w~~~~~~~~~~~~~~~~~~~~~  228 (302)
                      -+..||++...+++..++.++.
T Consensus       166 p~~~fwi~s~~~~il~lll~~~  187 (412)
T PF01306_consen  166 PNIIFWIASAAAIILLLLLLLL  187 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHc
Confidence            3677887766655555544443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.95  E-value=3.2e-08  Score=83.34  Aligned_cols=154  Identities=28%  Similarity=0.379  Sum_probs=115.1

Q ss_pred             hhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcch--hH
Q 022133           65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRN--LI  142 (302)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~--~~  142 (302)
                      ..........+.+..+.+.+......++..+.+.++..++.++.|.++||+|||+.++.+.....++.+..++..+  ..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
T COG0477          16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA   95 (338)
T ss_pred             HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence            4444455566666666554432012378899999999999999999999999998888887765555556666555  88


Q ss_pred             HHHHHHHHHhhhhcchhhhHHHHhhhcCCC-CccchhHhHHHH-HHHHHHHHHHHHhhccccc--CcchHHHHHHhHHHH
Q 022133          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEI--AGWWRICFWVSIVPA  218 (302)
Q Consensus       143 ~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~-~~R~~~~~~~~~-~~~~g~~~~~~~~~~~~~~--~g~w~~~~~~~~~~~  218 (302)
                      .+++.|++.|++.+...+....++.|++|. +.|+...+.... ...+|..+++.+++.+...  .+ |+..+.......
T Consensus        96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  174 (338)
T COG0477          96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG-WRAAFLLAALLG  174 (338)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHH
Confidence            888999999999998999999999999998 678888888777 5778888888777666544  23 888666655444


Q ss_pred             H
Q 022133          219 A  219 (302)
Q Consensus       219 ~  219 (302)
                      .
T Consensus       175 ~  175 (338)
T COG0477         175 L  175 (338)
T ss_pred             H
Confidence            3

>PRK11462 putative transporter; Provisional

Probab=98.95  E-value=7.1e-08  Score=87.11  Aligned_cols=111  Identities=17%  Similarity=-0.012  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHhhhhcchhhhHHHHhhh
Q 022133           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r~~~g~~~~~~~~~~~~~~~e  168 (302)
                      +.+.+.+.++.+++.+++++++||+|+|+.+..+..+.++..++..+.+  +...+++.-++.|++.+...+..+++++|
T Consensus       266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad  345 (460)
T PRK11462        266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD  345 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667777888899999999999999999987765554444333333322  22234445566788777777777778877


Q ss_pred             cCC-----CCccchh--HhHHHHHHHHHHHHHHHHhhccc
Q 022133          169 VSP-----PFVRGTY--GAFIQIATCLGLMGSLLIGIPVK  201 (302)
Q Consensus       169 ~~p-----~~~R~~~--~~~~~~~~~~g~~~~~~~~~~~~  201 (302)
                      ...     +..|..+  .+......-+|..+++.+++.+.
T Consensus       346 ~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL  385 (460)
T PRK11462        346 TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML  385 (460)
T ss_pred             hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665     2244443  45555666666666666655544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.94  E-value=4.3e-08  Score=90.06  Aligned_cols=140  Identities=16%  Similarity=0.127  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhH---HHHHHHHHHhhhhcchhhhHHHHhhh
Q 022133           92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLI---GMLLGRFVVGTGMGLGPTVAALYVTE  168 (302)
Q Consensus        92 ~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~r~~~g~~~~~~~~~~~~~~~e  168 (302)
                      ............+....+.+.|++|||..+..+.++..+++++.++.....   ...+...+..++.+..+...+.+.+|
T Consensus       354 ~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  433 (521)
T KOG0255|consen  354 LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAE  433 (521)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444446667777778999999999999999999999999888765433   35555666666777777778999999


Q ss_pred             cCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhccCCCh
Q 022133          169 VSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESP  232 (302)
Q Consensus       169 ~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~pe~~  232 (302)
                      ++|+..|+.+.+..+....+|.+++|.+............... ++....+.+++..+++||+.
T Consensus       434 l~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  434 LIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLIL-FGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH-HHHHHHHHHHHHHhcCcccC
Confidence            9999999999999999999999999988765544221112222 34445555566668899993

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.93  E-value=2.7e-08  Score=88.78  Aligned_cols=169  Identities=20%  Similarity=0.216  Sum_probs=119.2

Q ss_pred             HHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHH----HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 022133           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSM----CLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (302)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~  131 (302)
                      ..+..+..+.......+..+.....++.+..... +.....    ..+...+.+++.|.++||+|||..+....+...+.
T Consensus        27 ~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~-~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~  105 (463)
T KOG2816|consen   27 LFLYMFSWGLSSTVMTNVILYLACTFGDDYQLEN-GLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILP  105 (463)
T ss_pred             HHHHHHHHHhcCcchhhhhhhhhcccccCccchh-hhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHh
Confidence            3344444444444444444444444443322221 223333    35677889999999999999999999999988888


Q ss_pred             HHHHhhcchhHHHHHHHHHHhhh--hcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHH
Q 022133          132 ASISATTRNLIGMLLGRFVVGTG--MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (302)
Q Consensus       132 ~~~~~~~~~~~~~~~~r~~~g~~--~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~  209 (302)
                      .+...+.. ++ +++   +.++.  .+.......+++++....++|...+++.+.....+..++|.+++......+ .-.
T Consensus       106 ~~~~~~~~-~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~-~a~  179 (463)
T KOG2816|consen  106 ALCLLFQG-YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG-IAL  179 (463)
T ss_pred             HHHHHHHH-HH-Hhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC-chH
Confidence            77766655 22 222   33332  334456778899999999999999999999999999999999999988877 678


Q ss_pred             HHHHhHHHHHHHHHH-hhccCCC
Q 022133          210 CFWVSIVPAAILCLA-MVFCAES  231 (302)
Q Consensus       210 ~~~~~~~~~~~~~~~-~~~~pe~  231 (302)
                      +|.+..+..++..+. .+++||+
T Consensus       180 ~f~ia~~~~~~~~~y~~~~l~Es  202 (463)
T KOG2816|consen  180 VFLIAAASGILSLLYMLLFLPES  202 (463)
T ss_pred             HHHHHHHHHHHHHHHHhhccccc
Confidence            888887777776665 4668887

>PRK11462 putative transporter; Provisional

Probab=98.90  E-value=4.9e-08  Score=88.14  Aligned_cols=163  Identities=15%  Similarity=0.066  Sum_probs=107.4

Q ss_pred             HHHHHHHhhhhccchhhhh-hhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh----hhHHH-HHHHHHHHHHHH
Q 022133           58 LSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRR-AFQLCALPMIIG  131 (302)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~Grr~-~~~~~~~~~~i~  131 (302)
                      ++.+..+.....+..++.. +.+..|++..  .+|.+..+.-+--++..|+.|.++||    +|||+ .++++.+..+++
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~--~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~   93 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAG--FVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIV   93 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHH--HHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHH
Confidence            3443434444444444444 4455676544  44888888888899999999999996    68765 445666777776


Q ss_pred             HHHHhhcch------hHHHHHHHHHHhhhhcchhhhHHHHhhhcCC-CCccchhHhHHHHHHHHHHHHHHHHhhcccccC
Q 022133          132 ASISATTRN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (302)
Q Consensus       132 ~~~~~~~~~------~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  204 (302)
                      ..++...+.      ...+++..++..++.........++.+|+.+ +++|.+..++...+..+|.++++.+...+....
T Consensus        94 ~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~  173 (460)
T PRK11462         94 CVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLI  173 (460)
T ss_pred             HHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            665544332      3345556667778888877778889999987 789999999988888888777766654433221


Q ss_pred             c------chHHHHHHhHHHHHHHH
Q 022133          205 G------WWRICFWVSIVPAAILC  222 (302)
Q Consensus       205 g------~w~~~~~~~~~~~~~~~  222 (302)
                      |      .|+....+.+++++++.
T Consensus       174 g~~~~~~g~~~~~~i~~ii~~i~~  197 (460)
T PRK11462        174 GGDNKPLGFQGGIAVLSVVAFMML  197 (460)
T ss_pred             CCCchhhhHHHHHHHHHHHHHHHH
Confidence            1      25555555444444433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.90  E-value=3.7e-09  Score=93.08  Aligned_cols=166  Identities=21%  Similarity=0.133  Sum_probs=135.2

Q ss_pred             HHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 022133           59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT  138 (302)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~  138 (302)
                      ..++.+.....+..++-...+|.|-...-  -|........|-++.-++.+++..|+|+-+++..++.+.++=.+.....
T Consensus       379 ~av~mG~g~~lv~tFLfWHled~~~~~~L--fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L  456 (618)
T KOG3762|consen  379 VAVVMGAGVGLVFTFLFWHLEDLGGIKTL--FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL  456 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCccee--eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh
Confidence            33444444444555555556776643333  3777777788889999999999999999999999999999888888899


Q ss_pred             chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHH-HHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHH
Q 022133          139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFI-QIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP  217 (302)
Q Consensus       139 ~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~  217 (302)
                      .|+|+.+..-+++|+..+..+....+|++...|++.|.++.++. ....++|-.+|.++++.+.+..+ -+..|.+.++.
T Consensus       457 ~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giA  535 (618)
T KOG3762|consen  457 QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIA  535 (618)
T ss_pred             cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999995 46779999999999999999888 58888877776


Q ss_pred             HHHHHHHhhc
Q 022133          218 AAILCLAMVF  227 (302)
Q Consensus       218 ~~~~~~~~~~  227 (302)
                      +++.++....
T Consensus       536 cl~~l~~~~~  545 (618)
T KOG3762|consen  536 CLVTLALFIS  545 (618)
T ss_pred             HHHHHHHHHH
Confidence            6665555443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.87  E-value=1.2e-07  Score=80.08  Aligned_cols=160  Identities=15%  Similarity=0.109  Sum_probs=122.4

Q ss_pred             HhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHHHHHhhcchhH
Q 022133           64 GYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTRNLI  142 (302)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-Grr~~~~~~~~~~~i~~~~~~~~~~~~  142 (302)
                      ....+....++|.+..|-|+|..+.  |++.+...+.....++....+.+|. .+|+..+....++.++...+.+.+.-.
T Consensus       221 S~~~Y~~~~WLP~ili~~G~sa~~a--G~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~  298 (395)
T COG2807         221 SLLYYIVIGWLPAILIDRGLSAAEA--GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQL  298 (395)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHh--hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhH
Confidence            3444556778999999999988777  8999999999999999999999964 567777777777777777776665443


Q ss_pred             HHHHHHHHHhhhhcchhhhHHHHhhhcCCCCc-cchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHH
Q 022133          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV-RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (302)
Q Consensus       143 ~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~-R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~  221 (302)
                      .+.. .++.|++.|+.++....++.......+ -+...++.+....+=..+||.+.|++.|..|+|+...+..+...+..
T Consensus       299 ~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m  377 (395)
T COG2807         299 PILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLM  377 (395)
T ss_pred             HHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHH
Confidence            3333 489999999999999999988876544 34445555655555567899999999999998998887766665555


Q ss_pred             HHHhh
Q 022133          222 CLAMV  226 (302)
Q Consensus       222 ~~~~~  226 (302)
                      .+.-+
T Consensus       378 ~i~Gl  382 (395)
T COG2807         378 LIFGL  382 (395)
T ss_pred             HHHHh
Confidence            44443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.87  E-value=1.5e-07  Score=85.40  Aligned_cols=130  Identities=15%  Similarity=-0.003  Sum_probs=99.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhH-----HHHH--HHHHHHHHHHHHHHhh---------cchhHHHHHHHHHHhh
Q 022133           90 EGLVVSMCLGGAFIGSTLSGWIADGVGR-----RRAF--QLCALPMIIGASISAT---------TRNLIGMLLGRFVVGT  153 (302)
Q Consensus        90 ~~~~~~~~~~~~~i~~~~~g~l~d~~Gr-----r~~~--~~~~~~~~i~~~~~~~---------~~~~~~~~~~r~~~g~  153 (302)
                      .+++.+...+..++.+++..++-.+.+|     +...  .+|+++.+++.+..++         ..|+++++...++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            3677777777777887776654444444     2333  6777777777766653         3578889999999999


Q ss_pred             hhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHH
Q 022133          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (302)
Q Consensus       154 ~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~  220 (302)
                      |.....|....++.+..|++.||+.+|++.....+|..+++.+........+ |...|...++..++
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~  459 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQG-VTGVFGKIGLVTLL  459 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888887655555 56665554444333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.86  E-value=4.1e-08  Score=88.79  Aligned_cols=150  Identities=11%  Similarity=0.006  Sum_probs=113.3

Q ss_pred             hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc----------chhHHHHHHH
Q 022133           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT----------RNLIGMLLGR  148 (302)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~r  148 (302)
                      ..+|++....  |.+.....++.+++..+.+++.+|++.|+++.++.++.+++.+.....          ++...++..-
T Consensus       281 ~~lG~s~~~~--G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~  358 (468)
T TIGR00788       281 QCLPGGPSFS--GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS  358 (468)
T ss_pred             ccCCCCcchh--hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence            4567766655  888888889999999999999999999999999999988877543211          2333445556


Q ss_pred             HHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCc----chHHHHH---HhHHHHHHH
Q 022133          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG----WWRICFW---VSIVPAAIL  221 (302)
Q Consensus       149 ~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g----~w~~~~~---~~~~~~~~~  221 (302)
                      ++.+++.+........++.+..|++.+|+..++.+...++|..+++.+++.+.+..|    .++..+.   +..++.++.
T Consensus       359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~  438 (468)
T TIGR00788       359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLP  438 (468)
T ss_pred             HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHH
Confidence            788888888888889999999999999999999999999999999999888876554    1222222   233334444


Q ss_pred             HHHhhccCC
Q 022133          222 CLAMVFCAE  230 (302)
Q Consensus       222 ~~~~~~~pe  230 (302)
                      +...+++|+
T Consensus       439 l~~~~llP~  447 (468)
T TIGR00788       439 LPLLHLLPR  447 (468)
T ss_pred             HHHHHhCCC
Confidence            444456785

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.84  E-value=9.9e-09  Score=94.53  Aligned_cols=177  Identities=17%  Similarity=0.246  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~  132 (302)
                      +.+..+..+..++...++...+..+-+.++++.++.  |++.+.+-++..+...+..+..-|.-|-+.+-+|.+++++++
T Consensus        99 l~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~s--G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   99 LVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQS--GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcc--eeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            344455566667777777778888888899988776  899999999999999999999999988888899999999999


Q ss_pred             HHHhhc--------------------c--------------------------------hhHHHHHHHHHHhhhhcchhh
Q 022133          133 SISATT--------------------R--------------------------------NLIGMLLGRFVVGTGMGLGPT  160 (302)
Q Consensus       133 ~~~~~~--------------------~--------------------------------~~~~~~~~r~~~g~~~~~~~~  160 (302)
                      +++++-                    +                                -+..++++.++.|+|....++
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence            887751                    0                                022567789999999999999


Q ss_pred             hHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC------------------cchHHHHHHhHHHHHHHH
Q 022133          161 VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA------------------GWWRICFWVSIVPAAILC  222 (302)
Q Consensus       161 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------------g~w~~~~~~~~~~~~~~~  222 (302)
                      ....|+-|...+++-...+|+......+|.++|.+++++....+                  |.|..-|++.+.+.++..
T Consensus       257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a  336 (735)
T KOG3626|consen  257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA  336 (735)
T ss_pred             CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888764211                  236667777777777777


Q ss_pred             HHhhccCCC
Q 022133          223 LAMVFCAES  231 (302)
Q Consensus       223 ~~~~~~pe~  231 (302)
                      +.++++|.+
T Consensus       337 ~p~f~fPk~  345 (735)
T KOG3626|consen  337 VPLFFFPKE  345 (735)
T ss_pred             HHHHhCccc
Confidence            778888865

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.83  E-value=1.7e-07  Score=82.92  Aligned_cols=170  Identities=22%  Similarity=0.208  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHhhhhccchhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh----hhH-HHHHHHHHHH
Q 022133           54 LVATLSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGR-RRAFQLCALP  127 (302)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~Gr-r~~~~~~~~~  127 (302)
                      +.-.++-+...........++..+. +..|++...  +|.+..+.-+.-++.-|+.|.++||    +|| |+.++.+.+.
T Consensus        15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~--aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip   92 (467)
T COG2211          15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAAL--AGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIP   92 (467)
T ss_pred             HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHH--HHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHH
Confidence            3444455555555555555665544 446765544  4788888888889999999999996    676 5556777787


Q ss_pred             HHHHHHHHhhcch------hHHHHHHHHHHhhhhcchhhhHHHHhhhcCC-CCccchhHhHHHHHHHHHHHHHHHHhhcc
Q 022133          128 MIIGASISATTRN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (302)
Q Consensus       128 ~~i~~~~~~~~~~------~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  200 (302)
                      .++.+.++..+++      ..-.++...+.+++.........++.+|+.+ +++|.+..++-..+..+|.++..++.+.+
T Consensus        93 ~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~pl  172 (467)
T COG2211          93 FAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPL  172 (467)
T ss_pred             HHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887777766653      4445667888899998888888889999975 58999999998888888876665555444


Q ss_pred             cccCc------chHHHHHHhHHHHHHHHHHh
Q 022133          201 KEIAG------WWRICFWVSIVPAAILCLAM  225 (302)
Q Consensus       201 ~~~~g------~w~~~~~~~~~~~~~~~~~~  225 (302)
                      ....+      +|+...++.+++++++.+..
T Consensus       173 v~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~  203 (467)
T COG2211         173 VKLFGGGDKALGYQGTALVLGVIGVILLLFC  203 (467)
T ss_pred             HHHhCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            32211      25555555555544444433

>PRK09848 glucuronide transporter; Provisional

Probab=98.83  E-value=1.5e-07  Score=84.71  Aligned_cols=140  Identities=17%  Similarity=0.171  Sum_probs=85.9

Q ss_pred             HHHHHHHhhhhccchhhh-hhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh----hHHHHH-HHHHHHHHHH
Q 022133           58 LSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV----GRRRAF-QLCALPMIIG  131 (302)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~----Grr~~~-~~~~~~~~i~  131 (302)
                      ++.+......+...++++ ++.+..|++..+  +|.+.+...+..++..+++|+++||.    |||+.. +++.+...+.
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~--~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~   92 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAA--AGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF   92 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH
Confidence            343344444444444443 445556876554  49999999999999999999999996    777654 5555544444


Q ss_pred             HHH-Hhhc----ch--hHHHHHHHHHHhhhhcchhhhHHHHhhhcCCC-CccchhHhHHHHHH-----HHHHHHHHHHhh
Q 022133          132 ASI-SATT----RN--LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQIAT-----CLGLMGSLLIGI  198 (302)
Q Consensus       132 ~~~-~~~~----~~--~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~-~~R~~~~~~~~~~~-----~~g~~~~~~~~~  198 (302)
                      ..+ +...    .+  ...+++..++.+++.+...+...++..|+... ++|....+....+.     .++..++|.+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~  172 (448)
T PRK09848         93 SVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN  172 (448)
T ss_pred             HHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333 2221    11  22234455667777777776666777776644 67888766654432     344556666655


Q ss_pred             c
Q 022133          199 P  199 (302)
Q Consensus       199 ~  199 (302)
                      .
T Consensus       173 ~  173 (448)
T PRK09848        173 S  173 (448)
T ss_pred             h
Confidence            4

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.81  E-value=3.8e-09  Score=85.99  Aligned_cols=142  Identities=16%  Similarity=0.103  Sum_probs=108.5

Q ss_pred             HHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHhh--
Q 022133           61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISAT--  137 (302)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grr~~~~~~~~~~~i~~~~~~~--  137 (302)
                      |...+..-.....-..+..+.+++..+.  .++.+.+..-+.+-++++|++.|| +|-|..-++-++...++.++++.  
T Consensus        54 fgsyfcyd~p~alq~~fk~d~ni~~akf--tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg  131 (459)
T KOG4686|consen   54 FGSYFCYDAPGALQIDFKLDSNIEYAKF--TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG  131 (459)
T ss_pred             ccceeecCCchhhhhhhhcccccceeee--eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch
Confidence            3333333333334445555666655555  588899999999999999999996 68777777777777788877764  


Q ss_pred             -cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC
Q 022133          138 -TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (302)
Q Consensus       138 -~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  204 (302)
                       .+.++++..+|++.|+|.-..-.....+..-||..++-+..+|+......+|+.+...+.+++.+..
T Consensus       132 i~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~  199 (459)
T KOG4686|consen  132 ISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM  199 (459)
T ss_pred             HHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence             5789999999999999877776777889999999999999999998888888877666666655543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.81  E-value=6.6e-07  Score=79.16  Aligned_cols=127  Identities=17%  Similarity=0.151  Sum_probs=89.5

Q ss_pred             hhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH-HHHHHHhh--cchhHHHHHHHHH
Q 022133           75 ESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI-IGASISAT--TRNLIGMLLGRFV  150 (302)
Q Consensus        75 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~-i~~~~~~~--~~~~~~~~~~r~~  150 (302)
                      +.+.++ +|.+..+.  ++......++..++.++.+++.||+|++........+.. +.......  ..+.+.+.+..++
T Consensus       231 ~~~~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (394)
T PRK11652        231 GVLMGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAAL  308 (394)
T ss_pred             hHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            334443 66655443  777777888888899999999999984443322222221 21112222  2345566777888


Q ss_pred             HhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC
Q 022133          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (302)
Q Consensus       151 ~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  204 (302)
                      .|++.+...+....+..|.+| +++|...++.+....+|..+++.+++.+....
T Consensus       309 ~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~  361 (394)
T PRK11652        309 FFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG  361 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            999999889999999999887 57899999999999999999999998876553

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.80  E-value=3.1e-07  Score=79.91  Aligned_cols=159  Identities=14%  Similarity=0.095  Sum_probs=125.9

Q ss_pred             hhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHh
Q 022133           74 LESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG  152 (302)
Q Consensus        74 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g  152 (302)
                      .|.+.+. .|++.++.. .-+.-...-.+.+..++...+.|..|-|++++++.+...+...+..+.++...+-+..++.|
T Consensus        27 ~~yL~~~~kn~T~~qv~-~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg  105 (412)
T PF01770_consen   27 TPYLTGPDKNFTEEQVN-NEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYG  105 (412)
T ss_pred             hHHHcCCccCCCHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHH
Confidence            3444443 688777653 45555566677788899999999999999999999999988888889999999999999999


Q ss_pred             hhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCc-chHHHHHHhHHHHHHHHHHhhccCCC
Q 022133          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRICFWVSIVPAAILCLAMVFCAES  231 (302)
Q Consensus       153 ~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g-~w~~~~~~~~~~~~~~~~~~~~~pe~  231 (302)
                      ++.+. ..+.++++--..|+++-.++.+....+.-+|.+++.++|..+....+ .++...++......++++..+++|..
T Consensus       106 ~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~  184 (412)
T PF01770_consen  106 LATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMP  184 (412)
T ss_pred             HHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            98766 45777888888888888889999889999999999998887776433 26667677776667777777888876


Q ss_pred             hHH
Q 022133          232 PHW  234 (302)
Q Consensus       232 ~~~  234 (302)
                      ++.
T Consensus       185 ~~S  187 (412)
T PF01770_consen  185 KRS  187 (412)
T ss_pred             Ccc
Confidence            543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.78  E-value=2.6e-07  Score=84.26  Aligned_cols=108  Identities=9%  Similarity=-0.036  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHHHH----HhhhhhhhHHHHHHHHHHHHHHHHHHHhhcch---------hHHHHHHHHHHhhhhcc
Q 022133           91 GLVVSMCLGGAFIGSTLS----GWIADGVGRRRAFQLCALPMIIGASISATTRN---------LIGMLLGRFVVGTGMGL  157 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~----g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~r~~~g~~~~~  157 (302)
                      +++.+...+...+..++.    +++.+|++....+.+|+++.+++.+..++..+         .++++..+++.|++.+.
T Consensus       319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~  398 (500)
T PRK09584        319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM  398 (500)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence            455666555555555555    66667777778888999998888877665533         45788889999999999


Q ss_pred             hhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhh
Q 022133          158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI  198 (302)
Q Consensus       158 ~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~  198 (302)
                      ..|....++.+..|++.||+++|++..+..+|..++..+..
T Consensus       399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888888877766654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.73  E-value=3.3e-08  Score=86.36  Aligned_cols=117  Identities=18%  Similarity=0.154  Sum_probs=83.2

Q ss_pred             cchhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh--cc--hhHHH
Q 022133           70 VNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT--TR--NLIGM  144 (302)
Q Consensus        70 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~--~~--~~~~~  144 (302)
                      ...+.|.+. +.+|.+..+.  +++.+...++.+++.+++|+++||+|||+.+..+....+.+..+..+  ..  +....
T Consensus       244 ~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (366)
T TIGR00886       244 VSSIFAMFFKDQFGLSKVTA--GAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVF  321 (366)
T ss_pred             HHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHH
Confidence            344455454 4567765554  78888888889999999999999999998887777666555544433  22  55555


Q ss_pred             HHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHH
Q 022133          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLG  189 (302)
Q Consensus       145 ~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g  189 (302)
                      .+...+.+++.|...+....++++.+| +++|...|+.+....+|
T Consensus       322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       322 IVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            555556666666666677788888887 68999999987766554

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.65  E-value=7.3e-07  Score=83.20  Aligned_cols=149  Identities=15%  Similarity=0.172  Sum_probs=110.4

Q ss_pred             hhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHhhcch--------hHHHH
Q 022133           75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRN--------LIGML  145 (302)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grr~~~~~~~~~~~i~~~~~~~~~~--------~~~~~  145 (302)
                      ..+.+.+|++.+.+  ..+...+....-+..+++|+++|+ +||++.++++.++..++..+.++...        ....+
T Consensus        12 lYl~~~lg~~~~~A--~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l   89 (654)
T TIGR00926        12 LYFLNFLGFSESTS--TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDL   89 (654)
T ss_pred             HHHHHHcCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHH
Confidence            33445567765554  455666666666888899999995 79999999999999888887765421        23355


Q ss_pred             HHHHHHhhhhcchhhhHHHHhhhcCCCCc---cchhHhHHHHHHHHHHHHHHHHhhccccc-------CcchHHHHHHhH
Q 022133          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFV---RGTYGAFIQIATCLGLMGSLLIGIPVKEI-------AGWWRICFWVSI  215 (302)
Q Consensus       146 ~~r~~~g~~~~~~~~~~~~~~~e~~p~~~---R~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~g~w~~~~~~~~  215 (302)
                      ++-.+..+|.|+.-+...+...|.++.++   |-.+..++..+.++|+++++.+.+++.+.       .+ |...|.+.+
T Consensus        90 ~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~-~~~aF~i~~  168 (654)
T TIGR00926        90 LGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC-YPLAFGVPA  168 (654)
T ss_pred             HHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc-hHHHHHHHH
Confidence            67788889999999999999999997653   55667777788889999998888877633       24 888888877


Q ss_pred             HHHHHHHHHhh
Q 022133          216 VPAAILCLAMV  226 (302)
Q Consensus       216 ~~~~~~~~~~~  226 (302)
                      +..+++++...
T Consensus       169 i~m~ia~lvf~  179 (654)
T TIGR00926       169 ILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHH
Confidence            77776655543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.61  E-value=1.5e-06  Score=79.00  Aligned_cols=110  Identities=10%  Similarity=0.030  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHHHH-------HHHHHHHHHHHHHHHh-----hc-----chhHHHHHHHHHHhh
Q 022133           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRA-------FQLCALPMIIGASISA-----TT-----RNLIGMLLGRFVVGT  153 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~-------~~~~~~~~~i~~~~~~-----~~-----~~~~~~~~~r~~~g~  153 (302)
                      +++.+...+..++..++.+++.||+|+|+.       +.+|+++.+++.+..+     ..     .+.+.++...++.|+
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~  391 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL  391 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            456666556677888999999999999973       6677777666654321     11     246667788999999


Q ss_pred             hhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcc
Q 022133          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (302)
Q Consensus       154 ~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  200 (302)
                      |.+...+....++.+..|++.+|.++|+++....+|..++..++...
T Consensus       392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999998888877544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.61  E-value=1e-06  Score=75.60  Aligned_cols=155  Identities=14%  Similarity=0.130  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHhhhhccchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 022133           52 HVLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII  130 (302)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i  130 (302)
                      ......++.|++--....+..+++.+..+ .|.+..+.  +...+.+..+.++|.+++.++..|+...+.+.+..++..+
T Consensus       237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~a--a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~il  314 (422)
T COG0738         237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQA--AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAIL  314 (422)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            34555566666544455566777777776 55555544  7888999999999999999999999999999999988888


Q ss_pred             HHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHH
Q 022133          131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (302)
Q Consensus       131 ~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~  210 (302)
                      .++..++.++...+ .+-++.|+.++..+|...+...+..| ++-.. .+..-....+|+.+.|.+.|++.+..| -...
T Consensus       315 l~~~~~l~~g~v~~-~~l~~ig~F~simfPTIfslal~~l~-~~ts~-~s~~l~maivGGAiiP~l~G~i~d~~g-~~~~  390 (422)
T COG0738         315 LLLAVALIGGVVAL-YALFLIGLFNSIMFPTIFSLALKNLG-EHTSV-GSGLLVMAIVGGAIIPPLQGVIADMFG-IQLT  390 (422)
T ss_pred             HHHHHHHhcChHHH-HHHHHHHHHhHHHHHHHHHHHHhccC-ccccc-cceeeeeheecchHHHHHHHHHHHhhh-hHHH
Confidence            88888888886654 45678889999999999999999998 33333 333334556788899999999999887 3444


Q ss_pred             HH
Q 022133          211 FW  212 (302)
Q Consensus       211 ~~  212 (302)
                      +.
T Consensus       391 ~~  392 (422)
T COG0738         391 FL  392 (422)
T ss_pred             HH
Confidence            44

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=1.7e-07  Score=79.95  Aligned_cols=162  Identities=17%  Similarity=0.081  Sum_probs=116.1

Q ss_pred             HHHHHHHHHhhhhccchhhhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhh--HHHHHHHHHHHHHHHH
Q 022133           56 ATLSSFLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG--RRRAFQLCALPMIIGA  132 (302)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G--rr~~~~~~~~~~~i~~  132 (302)
                      +....-..+......-+.++.+.. .+.  .+....|....-..+.+++++.+.|.++||++  |......+++...+++
T Consensus       275 ~agai~~~n~~lafLePtlslwm~e~m~--~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~  352 (464)
T KOG3764|consen  275 IAGAITFSNSSLAFLEPTLSLWMLETMF--TPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSS  352 (464)
T ss_pred             hhcchhhccchHHHhCcccHHHHHHhcc--CCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHh
Confidence            333333334444556666665444 343  23333366666677888999999999999999  6555566666666777


Q ss_pred             HHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCC------ccchhHhHHHHHHHHHHHHHHHHhhcccccCcc
Q 022133          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF------VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW  206 (302)
Q Consensus       133 ~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~------~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~  206 (302)
                      ....+++++..+.+-++..+++.+.........+.++...+      ..|...++...++++|.++||.+++.+.+..| 
T Consensus       353 ~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iG-  431 (464)
T KOG3764|consen  353 GPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIG-  431 (464)
T ss_pred             chhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehh-
Confidence            77778899999999999989888877766665555555433      45678889999999999999999999999998 


Q ss_pred             hHHHHHHhHHHHHH
Q 022133          207 WRICFWVSIVPAAI  220 (302)
Q Consensus       207 w~~~~~~~~~~~~~  220 (302)
                      .+|.-.+.++..++
T Consensus       432 F~wl~~iig~~n~i  445 (464)
T KOG3764|consen  432 FEWLMTIIGILNLI  445 (464)
T ss_pred             HHHHHHHHHHHHHH
Confidence            67766655555444

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.54  E-value=4.7e-06  Score=74.94  Aligned_cols=180  Identities=13%  Similarity=0.017  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHhhhhccchhhhhhhhh--cccCCcc---hh-----hHHHHHHHHHHHHHHHHHHHhhhhhhh-HHHH
Q 022133           52 HVLVATLSSFLFGYHLGVVNEPLESISLD--LGFNGNT---LA-----EGLVVSMCLGGAFIGSTLSGWIADGVG-RRRA  120 (302)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~-----~~~~~~~~~~~~~i~~~~~g~l~d~~G-rr~~  120 (302)
                      .+..+++..++..+....+..+.+.+..+  ++-+++.   .+     -.+....+.+...+.+++..++.+++| ||+.
T Consensus       259 ~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~  338 (477)
T TIGR01301       259 PVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRL  338 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence            44555556665555554444444433321  2222111   11     123444455555677788888999998 5777


Q ss_pred             HHHHHHHHHHHHHHHhhcch---------------------hHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCC--ccch
Q 022133          121 FQLCALPMIIGASISATTRN---------------------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF--VRGT  177 (302)
Q Consensus       121 ~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~--~R~~  177 (302)
                      ..++.++.+++.+.+.+..+                     ....++...+.|+..+..+.+.++++++..|.+  ..|.
T Consensus       339 ~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~  418 (477)
T TIGR01301       339 WGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGL  418 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcc
Confidence            78888888777776654322                     356677788999999999999999999999964  4488


Q ss_pred             hHhHHHHHHHHHHHHHHHHhhcccccCc-chHHHHHHhHHHHHHHHHH-hhccCCC
Q 022133          178 YGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRICFWVSIVPAAILCLA-MVFCAES  231 (302)
Q Consensus       178 ~~~~~~~~~~~g~~~~~~~~~~~~~~~g-~w~~~~~~~~~~~~~~~~~-~~~~pe~  231 (302)
                      .+|+.|.+..+..++..+..+.+.+..| .-.+.+.++++..+++.+. ++.+|.+
T Consensus       419 ~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~  474 (477)
T TIGR01301       419 SMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRP  474 (477)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999998888877666444333 2356777777777776554 4557765

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.51  E-value=7.5e-06  Score=62.03  Aligned_cols=108  Identities=17%  Similarity=0.087  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCC
Q 022133           92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP  171 (302)
Q Consensus        92 ~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p  171 (302)
                      ...++......+++++.+.+.+++|.|+.+++|.++..+-.... +-++.+.++.+-.+.|++.+..++....++.+...
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~  119 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST  119 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence            34455566678888999999999999999999999888655544 45667788899999999999999999999999999


Q ss_pred             CCccchhHhHHHHHHHHHHHHHHHHhhcc
Q 022133          172 PFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (302)
Q Consensus       172 ~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  200 (302)
                      ++.|++..+++-.....+.++|.++...+
T Consensus       120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  120 EETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999987777777777777665544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.49  E-value=1.1e-05  Score=71.84  Aligned_cols=140  Identities=16%  Similarity=0.143  Sum_probs=83.7

Q ss_pred             cchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHh-----hcchhH
Q 022133           70 VNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIA-DGVGRRRAFQLCALPMIIGASISA-----TTRNLI  142 (302)
Q Consensus        70 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~-d~~Grr~~~~~~~~~~~i~~~~~~-----~~~~~~  142 (302)
                      .....|.+.++ +|.+..+.  ++.......+..++..+.+.+. |+.++|. +.....+..++..+..     ..+++.
T Consensus       237 ~~~~~P~~l~~~~g~s~~~~--gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~~~~ig~~l~~~~~~~~~~~~~  313 (413)
T PRK15403        237 WVAVSPVILIDAGGMTTSQF--AWTQVPVFGAVIVANAIVARFVKDPTEPRF-IWRAVPIQLVGLALLIVGNLLWPHVWL  313 (413)
T ss_pred             HHHhChHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCchhH-HHHHHHHHHHHHHHHHHHHHHccccHH
Confidence            33455655544 46665555  7777767777778888777765 5555443 2222222222222221     123343


Q ss_pred             HHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhH
Q 022133          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (302)
Q Consensus       143 ~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~  215 (302)
                      ..++..++.++|.+...+......- .-....+|++.++++.....+...++..++++.....  ...|.+..
T Consensus       314 ~~~~~~~l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~  383 (413)
T PRK15403        314 WSVLGTSLYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGG--RLPFHLLA  383 (413)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--chHHHHHH
Confidence            4566777888888877766654332 2223358999999988888888888888888766643  45554433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.48  E-value=9.6e-06  Score=70.14  Aligned_cols=134  Identities=16%  Similarity=0.082  Sum_probs=94.4

Q ss_pred             hhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhh-----HHHHHHHHH-HHHHHHHHHHhh-----cc------
Q 022133           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-----RRRAFQLCA-LPMIIGASISAT-----TR------  139 (302)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-----rr~~~~~~~-~~~~i~~~~~~~-----~~------  139 (302)
                      +..|++++..  ..+.+.+...+. ....+.+|+.||+.+     ||..+++.. ...+.+..+..+     ..      
T Consensus         6 MIvEL~vpA~--lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~   82 (403)
T PF03209_consen    6 MIVELGVPAW--LVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSS   82 (403)
T ss_pred             HHHHhccHHH--HHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence            3445665432  335555655554 357899999999999     887776554 444444433332     12      


Q ss_pred             --hh---HHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHH
Q 022133          140 --NL---IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (302)
Q Consensus       140 --~~---~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~  213 (302)
                        .+   ....+...+.|+|.+...+...++++|..|+++|++..++.-....+|.+++..+.+.+.+..+.-|..-.+
T Consensus        83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~  161 (403)
T PF03209_consen   83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVI  161 (403)
T ss_pred             cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence              22   233455778899999999999999999999999999999988888899999999999887766644444333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.47  E-value=4.9e-06  Score=76.31  Aligned_cols=145  Identities=16%  Similarity=0.085  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHhhhhccchhhhhhhh-hcccCCcc-hhhHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHH
Q 022133           52 HVLVATLSSFLFGYHLGVVNEPLESISL-DLGFNGNT-LAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCALPM  128 (302)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~Gr-r~~~~~~~~~~  128 (302)
                      .+....+..+..+........+.|.... -++-+... ...++......++..+|+.+.|.+..+++| |..++++.+++
T Consensus       311 ~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~  390 (599)
T PF06609_consen  311 GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLM  390 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence            3444445555555555444444444332 33332211 123677778888888999999999988877 55556777666


Q ss_pred             HHHHHHHhh--cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHH
Q 022133          129 IIGASISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI  196 (302)
Q Consensus       129 ~i~~~~~~~--~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~  196 (302)
                      .+++.+++.  .+|....+..-++.|++.|...........-..|.+.-|.+.++......+|+.++..+
T Consensus       391 ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aI  460 (599)
T PF06609_consen  391 TAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAI  460 (599)
T ss_pred             HHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence            655544443  24555566778899999998887777777788899999999998888877777666543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.42  E-value=8.7e-06  Score=73.48  Aligned_cols=158  Identities=16%  Similarity=0.056  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRAFQLCALP  127 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~Grr~~~~~~~~~  127 (302)
                      ++...+..+......+.+..++|.+.++ .|++..+.  +.+.+.+.++.+++.+++|+++||    ..+|..+...+.+
T Consensus       275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a--~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~  352 (495)
T KOG2533|consen  275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQA--NLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL  352 (495)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHh--ccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4556666677777777788899999888 33544444  788899999999999999999999    7777777777666


Q ss_pred             HHHHH-HHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccch-hHhHHHHHHHHHHHHHHH-HhhcccccC
Q 022133          128 MIIGA-SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGT-YGAFIQIATCLGLMGSLL-IGIPVKEIA  204 (302)
Q Consensus       128 ~~i~~-~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~-~~~~~~~~~~~g~~~~~~-~~~~~~~~~  204 (302)
                      ..+.. .......+......+.+....+.+...+......++....+.|.. ..+....+.+.++.++|. ..+......
T Consensus       353 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y  432 (495)
T KOG2533|consen  353 YAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRY  432 (495)
T ss_pred             HHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcch
Confidence            54443 444334334433333344444445555566666666665555444 344444555555444443 333334444


Q ss_pred             cchHHHHHH
Q 022133          205 GWWRICFWV  213 (302)
Q Consensus       205 g~w~~~~~~  213 (302)
                      + |...|++
T Consensus       433 ~-~~~~f~~  440 (495)
T KOG2533|consen  433 G-WGAVFYM  440 (495)
T ss_pred             h-hhhHHHH
Confidence            4 6667644

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.41  E-value=1.9e-05  Score=71.33  Aligned_cols=144  Identities=17%  Similarity=0.119  Sum_probs=98.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH-HHHHHHHHhhc--chhHHHHHHHHHHhhhhcchhhhHHHHh
Q 022133           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP-MIIGASISATT--RNLIGMLLGRFVVGTGMGLGPTVAALYV  166 (302)
Q Consensus        90 ~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~-~~i~~~~~~~~--~~~~~~~~~r~~~g~~~~~~~~~~~~~~  166 (302)
                      .++..++..+..++..|+.|.++|+-|+|+.++....+ .+++++.+.+.  .++....+..++..++.+.......+++
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L  151 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL  151 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35777888888999999999999999877776655444 44555555542  3455555566666778888888889999


Q ss_pred             hhcCCCCcc--------------------------chhHhHHHHHHHHHHHHHHHHhhcccccCc-------chHHHHHH
Q 022133          167 TEVSPPFVR--------------------------GTYGAFIQIATCLGLMGSLLIGIPVKEIAG-------WWRICFWV  213 (302)
Q Consensus       167 ~e~~p~~~R--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g-------~w~~~~~~  213 (302)
                      .|+.+++.+                          ++..+.-.....+|+++..++...+....+       ..|..+.+
T Consensus       152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~  231 (477)
T PF11700_consen  152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI  231 (477)
T ss_pred             HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence            999999888                          888888666666776666555444322111       14666666


Q ss_pred             hHHHHH-HHHHHhhccCCChH
Q 022133          214 SIVPAA-ILCLAMVFCAESPH  233 (302)
Q Consensus       214 ~~~~~~-~~~~~~~~~pe~~~  233 (302)
                      .++.-+ ..+...+++||.|+
T Consensus       232 ~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  232 VALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHHHHhCCCCCC
Confidence            655544 44555667888754

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.40  E-value=1.4e-06  Score=58.19  Aligned_cols=80  Identities=18%  Similarity=0.164  Sum_probs=71.6

Q ss_pred             HHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhH
Q 022133           63 FGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLI  142 (302)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~  142 (302)
                      .++..+.+.+.+|.+.++.+++.++.  |++.+...+|+.+|.+...++.++..+++.+..+.+...+..+.+++.++.+
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~a--g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~   81 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQA--GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW   81 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            45667778899999999999988877  8999999999999999999999998889999999999999999999888776


Q ss_pred             HH
Q 022133          143 GM  144 (302)
Q Consensus       143 ~~  144 (302)
                      .+
T Consensus        82 ~w   83 (85)
T PF06779_consen   82 LW   83 (85)
T ss_pred             HH
Confidence            54

Note that many members are hypothetical proteins.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.38  E-value=2.7e-06  Score=72.80  Aligned_cols=91  Identities=20%  Similarity=0.191  Sum_probs=74.1

Q ss_pred             hcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC------------
Q 022133          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA------------  204 (302)
Q Consensus       137 ~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------  204 (302)
                      ...++..+++..++.|.|.+...+....+++++.|++.+.+.+++.+.++++|.+++|++++.+....            
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            34688999999999999999999999999999999999999999999999999999999999776321            


Q ss_pred             ---cchHHHHHHhHHHHHHHHHHhhc
Q 022133          205 ---GWWRICFWVSIVPAAILCLAMVF  227 (302)
Q Consensus       205 ---g~w~~~~~~~~~~~~~~~~~~~~  227 (302)
                         ..|+++|++.+...++..+.+.+
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~  111 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAF  111 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               24888888554443433333333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.35  E-value=3e-05  Score=67.11  Aligned_cols=146  Identities=15%  Similarity=0.196  Sum_probs=112.2

Q ss_pred             hhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHH---hhcchhHHHHHHHHHHhh
Q 022133           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-GVGRRRAFQLCALPMIIGASIS---ATTRNLIGMLLGRFVVGT  153 (302)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-~~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~r~~~g~  153 (302)
                      .+-+|++..+.  ..++.....|..+|....|++.. |.++++.-.+++.+.+++..+.   +...+.+.+...-++.|+
T Consensus       236 g~Vfgmsv~eT--T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~  313 (403)
T PF03209_consen  236 GEVFGMSVGET--TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGL  313 (403)
T ss_pred             hHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            44578887776  58888899999999999998776 7788887777777766665543   345678888899999999


Q ss_pred             hhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC---------cchHHHHHHhHHHHHHHHHH
Q 022133          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA---------GWWRICFWVSIVPAAILCLA  224 (302)
Q Consensus       154 ~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------g~w~~~~~~~~~~~~~~~~~  224 (302)
                      +.|.........+-++..+++-|..+|.+.....++..++.++++.+.|..         ..|..+|.+.++..+.++++
T Consensus       314 g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l  393 (403)
T PF03209_consen  314 GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL  393 (403)
T ss_pred             hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence            999998888899999999999999999999999888888888888765421         12555666655555554444


Q ss_pred             h
Q 022133          225 M  225 (302)
Q Consensus       225 ~  225 (302)
                      .
T Consensus       394 l  394 (403)
T PF03209_consen  394 L  394 (403)
T ss_pred             H
Confidence            3

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.34  E-value=2.1e-06  Score=56.79  Aligned_cols=68  Identities=24%  Similarity=0.342  Sum_probs=55.7

Q ss_pred             HHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 022133           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (302)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~  127 (302)
                      ...++.....+.+.|+.+.+.++.|++..+.  |.+.++..+...++++++|.++||+|+++.++....+
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~i--Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQI--GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            3344445556678889999999989887766  9999999999999999999999999998887766554

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.33  E-value=6.9e-06  Score=73.55  Aligned_cols=154  Identities=18%  Similarity=0.173  Sum_probs=111.4

Q ss_pred             hhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh-----hHHHHHHHHHHHHHHHHHHHhhc----chhHH
Q 022133           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRAFQLCALPMIIGASISATT----RNLIG  143 (302)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----Grr~~~~~~~~~~~i~~~~~~~~----~~~~~  143 (302)
                      ..+.+.+++|++..+.  ....+...+.. ..-++.|.++|-+     .||+-++++.++.+++.+..+..    .+...
T Consensus        12 ~~~~l~~~l~ls~~~~--~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQL--QRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            4456778899887765  45555555554 4568999999986     36777777777776655555543    24556


Q ss_pred             HHHHHHHHhhhhcchhhhHHHHhhhcCCC--CccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHH
Q 022133          144 MLLGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (302)
Q Consensus       144 ~~~~r~~~g~~~~~~~~~~~~~~~e~~p~--~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~  221 (302)
                      ..++-++..+|......+.-+++.|....  +.||...+.......+|.+++..++|.+.+..+ ++..|.+.++..++.
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~l~  167 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALPLLM  167 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHHHHH
Confidence            66677788888888888899999998732  337788888888899999999999999988887 688888776665555


Q ss_pred             HHHhhc-cCC
Q 022133          222 CLAMVF-CAE  230 (302)
Q Consensus       222 ~~~~~~-~pe  230 (302)
                      .+..++ .+|
T Consensus       168 ~~~~~~~~~e  177 (433)
T PF03092_consen  168 LIVALFLLEE  177 (433)
T ss_pred             HHHHHHhhhh
Confidence            444444 444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PTZ00207 hypothetical protein; Provisional

Probab=98.27  E-value=2e-05  Score=72.68  Aligned_cols=174  Identities=13%  Similarity=-0.024  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhhhhhc-ccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHH--------HHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESISLDL-GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR--------RAFQL  123 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr--------~~~~~  123 (302)
                      ++++.+..++..-...++..-+.++.+.+ |.+.+.......+++..+++++|.+.+|+++...-+|        +..+.
T Consensus       355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~  434 (591)
T PTZ00207        355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALF  434 (591)
T ss_pred             HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHH
Confidence            44444444443333333444566677777 6633331102378888999999999999988322222        22222


Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHH-HHHhhcccc
Q 022133          124 CALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGS-LLIGIPVKE  202 (302)
Q Consensus       124 ~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~-~~~~~~~~~  202 (302)
                      ...++.++.+++++.-....+++.-++.|++.|..+++....++|+|. ++-|+-.-+...+..+|+.+- ..+.|.+.+
T Consensus       435 ~~~~~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd  513 (591)
T PTZ00207        435 IPSVCIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYT  513 (591)
T ss_pred             HHHHHHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            222255555555555333688999999999999999999999999999 888888888888888886654 566776654


Q ss_pred             cC----cc--------hHHHHHHhHHHHHHHHHHhhc
Q 022133          203 IA----GW--------WRICFWVSIVPAAILCLAMVF  227 (302)
Q Consensus       203 ~~----g~--------w~~~~~~~~~~~~~~~~~~~~  227 (302)
                      ..    +.        .+..|++.+..++.+++....
T Consensus       514 ~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~  550 (591)
T PTZ00207        514 QQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY  550 (591)
T ss_pred             HHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence            32    11        567777776666666554433

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.16  E-value=0.00034  Score=62.87  Aligned_cols=111  Identities=6%  Similarity=-0.080  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHH-HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc--c----------------------------
Q 022133           91 GLVVSMCLGGAFIG-STLSGWIADGVGRRRAFQLCALPMIIGASISATT--R----------------------------  139 (302)
Q Consensus        91 ~~~~~~~~~~~~i~-~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~--~----------------------------  139 (302)
                      .++-+...+...+. .++.+++++|++|++++-+.........+++++.  +                            
T Consensus        46 ~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~  125 (472)
T TIGR00769        46 PFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAI  125 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHH
Confidence            67777676666555 8899999999999999876665555544444332  1                            


Q ss_pred             -hhHHHHHHHHHHhhhhcchhh-hHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccc
Q 022133          140 -NLIGMLLGRFVVGTGMGLGPT-VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (302)
Q Consensus       140 -~~~~~~~~r~~~g~~~~~~~~-~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  201 (302)
                       +.|...+..+...+-.....+ +.+.++.|.+..++-.+..++...+.++|.++++.+..++.
T Consensus       126 ~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       126 LRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             012222333344443444444 77889999999999999999999999999999998877765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.07  E-value=0.00014  Score=65.86  Aligned_cols=110  Identities=18%  Similarity=0.144  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHH------HH-HHHHHHHHHHHHHHHhhc---------chhHHHHHHHHHHhhh
Q 022133           91 GLVVSMCLGGAFIGSTLSGWIADGVGRR------RA-FQLCALPMIIGASISATT---------RNLIGMLLGRFVVGTG  154 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr------~~-~~~~~~~~~i~~~~~~~~---------~~~~~~~~~r~~~g~~  154 (302)
                      +|..+.-.+..++.+|+.+++=.|.+||      +. +.+|+++.+++.+.+.+.         .+..++++..+++++|
T Consensus       311 ~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g  390 (493)
T PRK15462        311 AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA  390 (493)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence            5777877777777888777775555321      11 456677766666554321         2566788889999999


Q ss_pred             hcchhhhHHHHhhhcCCCCccchhHhHHHHH-HHHHHHHHHHHhhcc
Q 022133          155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIA-TCLGLMGSLLIGIPV  200 (302)
Q Consensus       155 ~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~-~~~g~~~~~~~~~~~  200 (302)
                      .-...|+..++++++.|++.||..+|.+... ..+|..++..++...
T Consensus       391 El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        391 ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998664 467777777666655

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.96  E-value=0.00013  Score=62.49  Aligned_cols=122  Identities=14%  Similarity=0.054  Sum_probs=102.2

Q ss_pred             hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhh--HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhc
Q 022133           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG--RRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG  156 (302)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~  156 (302)
                      ..+|++..  ++|-+.+...++..+.+....+..||..  -+-.+..++.+..-..++.+..+....+..+-.+-.+..+
T Consensus       290 ~rfg~ss~--~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A  367 (451)
T KOG2615|consen  290 GRFGYSSM--QQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTA  367 (451)
T ss_pred             CccCCChh--hheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHH
Confidence            34555544  4488888888888888988899999987  6777777777777777777888888888888888888888


Q ss_pred             chhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccc
Q 022133          157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (302)
Q Consensus       157 ~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  202 (302)
                      ...+....++....|.++||..+|+.....+++-++||+++|.+..
T Consensus       368 ~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  368 SVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            8888889999999999999999999999999999999999977654

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.93  E-value=1.6e-05  Score=69.32  Aligned_cols=145  Identities=12%  Similarity=0.129  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHH-HHH
Q 022133           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRAFQLCA-LPM  128 (302)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~Grr~~~~~~~-~~~  128 (302)
                      +.+....+...+....-..+++++..+.|++..-.  +.+..+.-+...+.+++.|..+||    +|||+.++... ...
T Consensus        35 i~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~--S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i  112 (498)
T KOG0637|consen   35 ISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWS--SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLI  112 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccc--cccccccccccceecccccccccccccccccccchHHHhhHHH
Confidence            33333333334444444456666777788765543  455555555667889999999996    78887776554 445


Q ss_pred             HHHHHHHhhcch-----------------hHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccch-hHhHHHHHHHHHH
Q 022133          129 IIGASISATTRN-----------------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGT-YGAFIQIATCLGL  190 (302)
Q Consensus       129 ~i~~~~~~~~~~-----------------~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~-~~~~~~~~~~~g~  190 (302)
                      .++.++.+++.+                 ...++++..+.=++.-.....+-+++.|++..+++.+ +.+++..+.++|+
T Consensus       113 ~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGn  192 (498)
T KOG0637|consen  113 AVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGN  192 (498)
T ss_pred             HHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcc
Confidence            666666665432                 2233444445556666777788899999998887777 9999999999999


Q ss_pred             HHHHHHhhcc
Q 022133          191 MGSLLIGIPV  200 (302)
Q Consensus       191 ~~~~~~~~~~  200 (302)
                      .+|..++++.
T Consensus       193 vLGY~~g~y~  202 (498)
T KOG0637|consen  193 VLGYALGSYL  202 (498)
T ss_pred             eeeeeccccc
Confidence            9998888743

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.82  E-value=0.00019  Score=63.12  Aligned_cols=109  Identities=11%  Similarity=0.145  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhc---ch------hHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCc---cchhHhHHHHHH
Q 022133          119 RAFQLCALPMIIGASISATT---RN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV---RGTYGAFIQIAT  186 (302)
Q Consensus       119 ~~~~~~~~~~~i~~~~~~~~---~~------~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~---R~~~~~~~~~~~  186 (302)
                      ++++++.++.++|.++..++   ..      ...++++.++.++|.|+.-+....+.+|.++++.   |.....++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            45677888888887774332   22      3678888999999999999999999999998763   455666788999


Q ss_pred             HHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHHhhcc
Q 022133          187 CLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC  228 (302)
Q Consensus       187 ~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~  228 (302)
                      ++|.++++.+.+++.++.+ |.+.|.+..+..+++++.++.-
T Consensus        82 n~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHHHHhC
Confidence            9999999999999998888 8999999888877777665543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.80  E-value=0.00063  Score=61.15  Aligned_cols=122  Identities=16%  Similarity=0.105  Sum_probs=101.9

Q ss_pred             hhhhcccCCcchhhHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhh
Q 022133           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSG-WIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGM  155 (302)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~  155 (302)
                      ....++++..+.  +...+.......+++.+.. .+...+|-|+.+..|+....+..++.+++.+.++++....+.++. 
T Consensus       268 l~~~f~w~~~~~--s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-  344 (463)
T KOG2816|consen  268 LKAKFGWNKKEF--SDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-  344 (463)
T ss_pred             EeeecCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-
Confidence            445577777666  7777777777788887766 788889999999999999999999999999999888877777764 


Q ss_pred             cchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccc
Q 022133          156 GLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (302)
Q Consensus       156 ~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  201 (302)
                      +...+...++++-+..++++|+..++......+..+++|.+.+.+.
T Consensus       345 ~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  345 GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence            4556788899999999999999999999999999999888877664

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.61  E-value=0.0011  Score=58.00  Aligned_cols=108  Identities=16%  Similarity=0.137  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH---HHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhh
Q 022133           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS---ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVT  167 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~  167 (302)
                      .+...++.+|..++.--...+  |+-|-+++.+-.++..+..+   +.-+.++.+.+++..+..|+..|..+.-....+.
T Consensus       284 ~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~  361 (402)
T PF02487_consen  284 RWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRIS  361 (402)
T ss_pred             HHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            567777777776665433222  34232222222222222222   2334578888888899999999999999999999


Q ss_pred             hcCCCCccchhHhHHHHHHHHHHHHHHHHhhcc
Q 022133          168 EVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (302)
Q Consensus       168 e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  200 (302)
                      |-.|+++|..+++....+.++|..++.+++-.+
T Consensus       362 ~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  362 EEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             hcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999999999999999999999998887654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.59  E-value=0.0025  Score=55.57  Aligned_cols=96  Identities=17%  Similarity=0.059  Sum_probs=69.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHHHHHHHhhcc---hhHHHHHHHHHHhhhhcchhhh
Q 022133           86 NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL-PMIIGASISATTR---NLIGMLLGRFVVGTGMGLGPTV  161 (302)
Q Consensus        86 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~-~~~i~~~~~~~~~---~~~~~~~~r~~~g~~~~~~~~~  161 (302)
                      .+..++...++..+..++-.|+.|.++|+.|+|+..+.... +..++.+...+.+   .+...++...+..++.......
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            34445778888888889999999999999997766654443 4444444444443   3455566677788888888888


Q ss_pred             HHHHhhhcCCCCccchhHhH
Q 022133          162 AALYVTEVSPPFVRGTYGAF  181 (302)
Q Consensus       162 ~~~~~~e~~p~~~R~~~~~~  181 (302)
                      ..+++.++.+++.-++..++
T Consensus       136 yds~L~~~~~k~~~~riS~l  155 (438)
T COG2270         136 YDSMLPRLTTKDNMGRISGL  155 (438)
T ss_pred             hhhHhhhhcCccccCccccc
Confidence            88999999998776666555

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.58  E-value=0.0039  Score=57.62  Aligned_cols=154  Identities=18%  Similarity=0.278  Sum_probs=109.9

Q ss_pred             cchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHhhc-------c--
Q 022133           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATT-------R--  139 (302)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grr~~~~~~~~~~~i~~~~~~~~-------~--  139 (302)
                      ....+.++..+++.+...+  .-..+.+.-......+++++++|- +||-+++.++.++..++..+..+.       +  
T Consensus        57 ~~nlv~ylt~~~~~~~~~a--a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~  134 (571)
T KOG1237|consen   57 VSNLVTYLTLELHASGGGA--ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFM  134 (571)
T ss_pred             hhHHHHHHHHHhccchHHH--HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence            4556666777777765433  455666666667788899999996 599999988888877775433221       0  


Q ss_pred             -------------h---hHHHHHHHHHHhhhhcchhhhHHHHhhhcCC---CC-ccc--hhHhHHHHHHHHHHHHHHHHh
Q 022133          140 -------------N---LIGMLLGRFVVGTGMGLGPTVAALYVTEVSP---PF-VRG--TYGAFIQIATCLGLMGSLLIG  197 (302)
Q Consensus       140 -------------~---~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p---~~-~R~--~~~~~~~~~~~~g~~~~~~~~  197 (302)
                                   +   ...+.....+..+|.|+.-+....+-+|-++   ++ .+.  ..+.++.....+|..++..+-
T Consensus       135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~  214 (571)
T KOG1237|consen  135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL  214 (571)
T ss_pred             ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH
Confidence                         1   2356666778888999999999999999998   32 223  556677788888888888887


Q ss_pred             hcccccCcchHHHHHHhHHHHHHHHHHhh
Q 022133          198 IPVKEIAGWWRICFWVSIVPAAILCLAMV  226 (302)
Q Consensus       198 ~~~~~~~g~w~~~~~~~~~~~~~~~~~~~  226 (302)
                      .++-++.+ |.+.|.+..+..++++++++
T Consensus       215 vyiq~~~~-w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  215 VYIQDNVG-WKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             Hhhhhccc-ceeeccHHHHHHHHHHHHHH
Confidence            77767777 89988887666666655543

>PRK03612 spermidine synthase; Provisional

Probab=97.52  E-value=0.011  Score=54.23  Aligned_cols=138  Identities=13%  Similarity=0.004  Sum_probs=76.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH-H-HHHHH-HHHh---hcch-hHHHHHHHHHHhhhhcchh
Q 022133           87 TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL-P-MIIGA-SISA---TTRN-LIGMLLGRFVVGTGMGLGP  159 (302)
Q Consensus        87 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~-~-~~i~~-~~~~---~~~~-~~~~~~~r~~~g~~~~~~~  159 (302)
                      ...++.+.+++..|.++|+.+++++.++.-|+...+-..+ + ..++. ++..   +... ...++...++.++..|+..
T Consensus        49 ~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  128 (521)
T PRK03612         49 VTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEI  128 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344789999999999999999988754433332221111 1 01111 1111   1111 1122334456677788887


Q ss_pred             hhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccc-ccCcchHHHHHHhHHHHHHHHHHh
Q 022133          160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-EIAGWWRICFWVSIVPAAILCLAM  225 (302)
Q Consensus       160 ~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~w~~~~~~~~~~~~~~~~~~  225 (302)
                      |....+..+... +.-+...|-......+|+++|.++.+++. ...|..+..+.++.+..+++++.+
T Consensus       129 Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~  194 (521)
T PRK03612        129 PLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFL  194 (521)
T ss_pred             HHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            777666654322 22345667777778888888888877654 355545565555544444443333

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.46  E-value=0.0039  Score=53.70  Aligned_cols=151  Identities=13%  Similarity=0.106  Sum_probs=96.2

Q ss_pred             cchhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhhHHHH
Q 022133           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-----GVGRRRA  120 (302)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-----~~Grr~~  120 (302)
                      .|...+.+..+.+.+.+++.-.+... .+|.+.+.-|.|.+..  +....++ .- .---++|.++.|     |+|||+.
T Consensus        26 ~~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~--a~fS~ay-~P-~sLKllWaPiVDs~y~k~~Grrks  100 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ--AIFSFAY-WP-FSLKLLWAPIVDSVYSKRFGRRKS  100 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhh--hhhhhhh-hH-HHHHHHHHhhhHHHHHHhhccccc
Confidence            34445566777778888888887777 8888888767776554  2221111 11 123457888888     9999886


Q ss_pred             HHH-HHHHHHHHHHHHhhc-----------chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHH
Q 022133          121 FQL-CALPMIIGASISATT-----------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL  188 (302)
Q Consensus       121 ~~~-~~~~~~i~~~~~~~~-----------~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~  188 (302)
                      -++ +..+.+..+...+..           ++...+....++.-+.++..-...-...-.+..+++-|.+......+...
T Consensus       101 Wvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~  180 (510)
T KOG3574|consen  101 WVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTA  180 (510)
T ss_pred             eeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhh
Confidence            532 333333334333321           23333434455666666666666667777888889999999888888888


Q ss_pred             HHHHHHHHhhccc
Q 022133          189 GLMGSLLIGIPVK  201 (302)
Q Consensus       189 g~~~~~~~~~~~~  201 (302)
                      |.+++..+.-.+.
T Consensus       181 GyfL~~~ifLaL~  193 (510)
T KOG3574|consen  181 GYFLGNVVFLALE  193 (510)
T ss_pred             hHHhhcceeeEec
Confidence            8888876655443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=0.02  Score=51.30  Aligned_cols=108  Identities=14%  Similarity=0.101  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHhhc------------------chhHHHHHHHH
Q 022133           91 GLVVSMCLGGAFIGSTLSGWIAD---GVGRRRAFQLCALPMIIGASISATT------------------RNLIGMLLGRF  149 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~g~l~d---~~Grr~~~~~~~~~~~i~~~~~~~~------------------~~~~~~~~~r~  149 (302)
                      +.......+|..++..+.+.+++   ++||++.+.++.++..+++++.-+.                  ++.....+.-+
T Consensus       282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~  361 (461)
T KOG3098|consen  282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF  361 (461)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence            44445556666677777777775   5789999999988887777665432                  13456677789


Q ss_pred             HHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhc
Q 022133          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (302)
Q Consensus       150 ~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~  199 (302)
                      +.|++-+...+..+.++.... +++|..+.+++..-..++..++.+..+.
T Consensus       362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            999999999999999999999 6778888888777777766665554443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.32  E-value=0.0018  Score=56.89  Aligned_cols=151  Identities=15%  Similarity=0.101  Sum_probs=90.0

Q ss_pred             hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHH-Hhhc---chhHHHHHHHHHHhh
Q 022133           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCALPMIIGASI-SATT---RNLIGMLLGRFVVGT  153 (302)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Gr-r~~~~~~~~~~~i~~~~-~~~~---~~~~~~~~~r~~~g~  153 (302)
                      ..-|++.  ...|++.....++.++++.++|.+.||... |.++++......++... ..+.   ...+.++....+.|+
T Consensus       294 ~~sgY~~--~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~  371 (480)
T KOG2563|consen  294 CPSGYEG--VFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGF  371 (480)
T ss_pred             ccccCCc--cccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHH
Confidence            3345544  334899999999999999999999999854 55555555554444322 1121   233455666778888


Q ss_pred             hhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCc---chHHHHHHhHHHHHHHHHHhhccCC
Q 022133          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG---WWRICFWVSIVPAAILCLAMVFCAE  230 (302)
Q Consensus       154 ~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g---~w~~~~~~~~~~~~~~~~~~~~~pe  230 (302)
                      +..+.+|...-+-.|..-|..-+...|+.+....+-+++-.++.+...+..+   +|...-+......++.+++..++++
T Consensus       372 ~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~  451 (480)
T KOG2563|consen  372 FGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRP  451 (480)
T ss_pred             hhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhh
Confidence            8888889888888888655555666777555444444444444444443332   2222233334444444444455544


Q ss_pred             C
Q 022133          231 S  231 (302)
Q Consensus       231 ~  231 (302)
                      .
T Consensus       452 ~  452 (480)
T KOG2563|consen  452 D  452 (480)
T ss_pred             h
Confidence            3

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=0.015  Score=52.07  Aligned_cols=105  Identities=12%  Similarity=-0.076  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCC
Q 022133           94 VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF  173 (302)
Q Consensus        94 ~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~  173 (302)
                      .++......+++++.+.+.|+.|.|..+.++..+.......+-+.+ -.-+++.-.+.|+|.+..+.....+++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            6667777889999999999999999999999999888777665555 444678889999999998888889999999999


Q ss_pred             ccchhHhHHHHHHHHHHHHHHHHhhc
Q 022133          174 VRGTYGAFIQIATCLGLMGSLLIGIP  199 (302)
Q Consensus       174 ~R~~~~~~~~~~~~~g~~~~~~~~~~  199 (302)
                      .+.+..++.=.....+.++|..+-..
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhhee
Confidence            99998888666666666666554433

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.26  E-value=0.052  Score=48.52  Aligned_cols=157  Identities=10%  Similarity=0.008  Sum_probs=95.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCC-cchhhHHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHH
Q 022133           44 PSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNG-NTLAEGLVVSMCLG-GAFIGSTLSGWIADGVGRRRAF  121 (302)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~Grr~~~  121 (302)
                      +..|..+...+...+..++..++.+..    -.+.+.+..+. .....+++-+...+ +..+..++..++++++.|.+++
T Consensus        20 pi~r~E~~kflpl~Ll~f~I~~ny~~l----R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF   95 (509)
T COG3202          20 PIRRYELKKFLPLALLFFCILFNYNLL----RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVF   95 (509)
T ss_pred             eccHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHH
Confidence            334445555555656555555554333    23344444331 22222555565555 5678888999999999999988


Q ss_pred             HHHHHHHHHHHHHHhhc---------ch-----------------------hHHHHHHHHHHhhhhcchhh-hHHHHhhh
Q 022133          122 QLCALPMIIGASISATT---------RN-----------------------LIGMLLGRFVVGTGMGLGPT-VAALYVTE  168 (302)
Q Consensus       122 ~~~~~~~~i~~~~~~~~---------~~-----------------------~~~~~~~r~~~g~~~~~~~~-~~~~~~~e  168 (302)
                      -+.........+++++.         ++                       -|...+...+.=+-.....+ +-+.+..|
T Consensus        96 ~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNe  175 (509)
T COG3202          96 YIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANE  175 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66665555544444431         11                       12222222222222222333 45678889


Q ss_pred             cCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccC
Q 022133          169 VSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (302)
Q Consensus       169 ~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  204 (302)
                      ++..++-.+..++++.+.+++.+++..+..++.+..
T Consensus       176 itt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~  211 (509)
T COG3202         176 ITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHR  211 (509)
T ss_pred             hhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence            999999999999999999999999888888877644

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.18  E-value=0.0044  Score=55.66  Aligned_cols=141  Identities=13%  Similarity=0.061  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh-c---------chhHHHHHHHHHHhhhhcchhh
Q 022133           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-T---------RNLIGMLLGRFVVGTGMGLGPT  160 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~-~---------~~~~~~~~~r~~~g~~~~~~~~  160 (302)
                      +.+..+..++..+|..+.....-+..-|+++..+.++.++..+.-.. .         ++.+-.+.--++..+..+..+-
T Consensus       258 ~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~m  337 (433)
T PF03092_consen  258 GTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFM  337 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHH
Confidence            56666666677777777777666667788888877776665543221 1         1112122334455555555556


Q ss_pred             hHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcc-------hHHHHHHhHHHHHHHHHHhhccCCC
Q 022133          161 VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-------WRICFWVSIVPAAILCLAMVFCAES  231 (302)
Q Consensus       161 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~-------w~~~~~~~~~~~~~~~~~~~~~pe~  231 (302)
                      ....+++|++|+..-|+..++.....++|..++..++..+.+..+.       -.+..++..+..++.+.+..++|+.
T Consensus       338 P~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~  415 (433)
T PF03092_consen  338 PSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQ  415 (433)
T ss_pred             HHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            6778899999999999999998888888887777777766543321       1223334444445555556667765

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.17  E-value=0.013  Score=52.24  Aligned_cols=145  Identities=13%  Similarity=0.109  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 022133           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (302)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~  133 (302)
                      ....++..+.++..-.....+..+...-|++....  |..-+...+....|.++..++.+|+|..+.=+++.........
T Consensus       261 flas~alalLY~TVLsf~~lmt~yl~~~G~s~~~i--gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~  338 (432)
T PF06963_consen  261 FLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVI--GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLA  338 (432)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence            33444444434443334556666666668876655  7888888888899999999999999988887777665544333


Q ss_pred             HHh---hc---c----hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcc
Q 022133          134 ISA---TT---R----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (302)
Q Consensus       134 ~~~---~~---~----~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  200 (302)
                      ++.   +.   +    +...++.+-.+.-+|.=+.-....-++.|..|.++||...|.-+...++--++...++-.+
T Consensus       339 ~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  339 LCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            222   11   1    2233333344444444445556667889999999999999998888777777666665443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.12  E-value=0.0044  Score=54.37  Aligned_cols=134  Identities=15%  Similarity=0.096  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcC
Q 022133           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS  170 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~  170 (302)
                      +.+.-+-.+-..+.-+++.++.+|+.-+.=+.+..++++++.++.+++++.+.-+++-++.+++.|........+.. .+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence            34555555566677777888888876444445666677888888888899988889999999999988877777644 55


Q ss_pred             CCCccchhHhHHHHHHHHHHHHHHHHhhcccccCc-chHHHHHHhHHHHHHHHHHh-hccCC
Q 022133          171 PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRICFWVSIVPAAILCLAM-VFCAE  230 (302)
Q Consensus       171 p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g-~w~~~~~~~~~~~~~~~~~~-~~~pe  230 (302)
                      ++    ..++-+..+.+.++++|+.....+.+ .+ .-|..+++.....++.++.+ +.+|.
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            54    34566667777777777777665555 33 13555555544444443333 34554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.10  E-value=0.041  Score=50.00  Aligned_cols=156  Identities=10%  Similarity=0.081  Sum_probs=87.4

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHH
Q 022133           44 PSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLG-GAFIGSTLSGWIADGVGRRRAFQ  122 (302)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~Grr~~~~  122 (302)
                      +..+..++.++...+..|+..++.+..-..-..+.-. ..+.+..  ..+-....+ +.++...+..+++++++|.+++-
T Consensus        17 pi~~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt-~~gae~I--~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy   93 (491)
T PF03219_consen   17 PIHRSELKKFLPLALMFFFILFNYTILRDLKDTLVVT-AQGAEVI--PFLKVWGVLPVAILFTILYSKLSNRLSREKLFY   93 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEe-cCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            3334455556666666666555543322211111100 0111211  333333333 34566778899999999999886


Q ss_pred             HHHHHHHHHHHHHhh---------cch----------------------hHHHHHHHHHHhhhhcchhh-hHHHHhhhcC
Q 022133          123 LCALPMIIGASISAT---------TRN----------------------LIGMLLGRFVVGTGMGLGPT-VAALYVTEVS  170 (302)
Q Consensus       123 ~~~~~~~i~~~~~~~---------~~~----------------------~~~~~~~r~~~g~~~~~~~~-~~~~~~~e~~  170 (302)
                      +..........++++         .++                      .|...+..+..-+-.....+ +-+.+..|.+
T Consensus        94 ~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~it  173 (491)
T PF03219_consen   94 IIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEIT  173 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            555544444333332         011                      11222222222222223333 4578899999


Q ss_pred             CCCccchhHhHHHHHHHHHHHHHHHHhhcccc
Q 022133          171 PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (302)
Q Consensus       171 p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  202 (302)
                      +.++-.+..++...+.++|.+++..+...+.+
T Consensus       174 t~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  174 TVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988877777666

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=96.93  E-value=0.036  Score=48.49  Aligned_cols=91  Identities=10%  Similarity=-0.047  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHH
Q 022133          141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (302)
Q Consensus       141 ~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~  220 (302)
                      +...++.-.+.+++.+......+...+++. ++.-...++=.+.+..+-+.+.-+.-....+....-...|.++.+..++
T Consensus       117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~P-~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~ll  195 (406)
T KOG1479|consen  117 FLVTLIIVVLLNLANAVVQGSLYGLAGLFP-SEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLL  195 (406)
T ss_pred             HHHHHHHHHHHhhhhhhhccchhhhhhcCC-HHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHH
Confidence            455566677788888887777777777654 4432222222222222222222222222222222234566667777777


Q ss_pred             HHHHhhccCCCh
Q 022133          221 LCLAMVFCAESP  232 (302)
Q Consensus       221 ~~~~~~~~pe~~  232 (302)
                      +++++..+|..|
T Consensus       196 C~i~y~~l~~lp  207 (406)
T KOG1479|consen  196 CFVLYLVLPKLP  207 (406)
T ss_pred             HHHHHHHhhcch
Confidence            777777777765

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.91  E-value=0.0018  Score=53.05  Aligned_cols=97  Identities=20%  Similarity=0.316  Sum_probs=67.7

Q ss_pred             chhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 022133           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (302)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~  150 (302)
                      .+++-++...+|+...+.  |.+..+-+-...+...+.|-++|+-|||+.-+.-.+..+++| +.-.++.+-.++++|.+
T Consensus        57 gPYvYyLYstYgFgkG~I--gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~L  133 (454)
T KOG4332|consen   57 GPYVYYLYSTYGFGKGDI--GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVL  133 (454)
T ss_pred             CceeeeeehhcCccCCcc--ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhh
Confidence            445555666777776665  555555555566777888999999999997555444444443 33456788889999999


Q ss_pred             HhhhhcchhhhHHHH-hhhcC
Q 022133          151 VGTGMGLGPTVAALY-VTEVS  170 (302)
Q Consensus       151 ~g~~~~~~~~~~~~~-~~e~~  170 (302)
                      .|+..+..++..-++ +.|.-
T Consensus       134 GGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  134 GGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             hhHHHHHHHHHHHHHHHHHhh
Confidence            999998888776654 55654

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.72  E-value=0.11  Score=46.46  Aligned_cols=167  Identities=11%  Similarity=-0.011  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH---
Q 022133           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII---  130 (302)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i---  130 (302)
                      ..+....++..++.-+..+..+.+..+.. +.+-...+...-.-.+..++..+..|.+.||..|.+++..+.++.-+   
T Consensus         5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~-p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~   83 (432)
T PF06963_consen    5 WRLYLSHFLSTWGDRMWEFAVPLFLISIF-PGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA   83 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence            44556667777777777777777776652 11222223333444455667888889999999999988777665432   


Q ss_pred             -HHHHHhh----cc-----hh--HHHHHHHHHHhhhhcchhhhHHHHh--hhcC------CCCccchhHhHHHHHHHHHH
Q 022133          131 -GASISAT----TR-----NL--IGMLLGRFVVGTGMGLGPTVAALYV--TEVS------PPFVRGTYGAFIQIATCLGL  190 (302)
Q Consensus       131 -~~~~~~~----~~-----~~--~~~~~~r~~~g~~~~~~~~~~~~~~--~e~~------p~~~R~~~~~~~~~~~~~g~  190 (302)
                       ++.++..    ..     +.  ..+++.-.+.|...-. ......+.  -||.      .+..+....+...-.--+.-
T Consensus        84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~L-as~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ck  162 (432)
T PF06963_consen   84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERL-ASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCK  162 (432)
T ss_pred             HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHH-HHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHH
Confidence             2222221    11     11  1111111222211111 11222221  2332      23334445555555666778


Q ss_pred             HHHHHHhhcccccCcchHHHHHHhHHHHHHHHH
Q 022133          191 MGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (302)
Q Consensus       191 ~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~  223 (302)
                      +++|++.|.+.+..+ .....++.+...++.++
T Consensus       163 llaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~  194 (432)
T PF06963_consen  163 LLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVF  194 (432)
T ss_pred             HHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHH
Confidence            999999999988777 56666555555555443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.72  E-value=0.065  Score=48.02  Aligned_cols=108  Identities=16%  Similarity=0.068  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHH---HH----HHHHHHHHHHHHHHHhhc----------chhHHHHHHHHHHhh
Q 022133           91 GLVVSMCLGGAFIGSTLSGWIADGVGRR---RA----FQLCALPMIIGASISATT----------RNLIGMLLGRFVVGT  153 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr---~~----~~~~~~~~~i~~~~~~~~----------~~~~~~~~~r~~~g~  153 (302)
                      ++..+.-.+.-++..++..++--+.+++   +.    +-+++++.+.+.++....          .+.++++...+++++
T Consensus       327 ~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~  406 (498)
T COG3104         327 AWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSF  406 (498)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            4777777777777888777777775554   11    233444444333333221          246778888999999


Q ss_pred             hhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhh
Q 022133          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI  198 (302)
Q Consensus       154 ~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~  198 (302)
                      |.=+..|+..+++..+.|++-.+..++.+......|..++..+++
T Consensus       407 gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         407 GELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            999999999999999999999999999988888888877776666

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.70  E-value=0.047  Score=49.05  Aligned_cols=108  Identities=12%  Similarity=0.034  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHH--HHHHHHHHHHhhc---------chhHHHHHHHHHHhhhhcc
Q 022133           91 GLVVSMCLGGAFIGSTLSGWIADGVGRR--RAFQLCA--LPMIIGASISATT---------RNLIGMLLGRFVVGTGMGL  157 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr--~~~~~~~--~~~~i~~~~~~~~---------~~~~~~~~~r~~~g~~~~~  157 (302)
                      -.....+++|-.+|..+..+..- -++|  .+++.+.  ++.+...+++...         ++-+..++..++.|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            35667778888888876554311 1222  3332222  1222222233222         3455667778999999999


Q ss_pred             hhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhc
Q 022133          158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (302)
Q Consensus       158 ~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~  199 (302)
                      ..+....+..+..++++|..+..+...+..+|..+|..++-.
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~  430 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL  430 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988888899999999999999999999999998888877544

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.64  E-value=0.027  Score=50.60  Aligned_cols=89  Identities=15%  Similarity=0.078  Sum_probs=47.8

Q ss_pred             hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhh----cccccCcc---hHHHHH
Q 022133          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI----PVKEIAGW---WRICFW  212 (302)
Q Consensus       140 ~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~g~---w~~~~~  212 (302)
                      .++..++.-++.|++.+........+.+ .+|++.    +..+..+.+++++++.++.-    ...+..+.   -...|.
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~  179 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG  179 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence            3556666777888888888877777777 555442    33333344444433332211    11121011   123444


Q ss_pred             HhHHHHHHHHHHhhccCCChH
Q 022133          213 VSIVPAAILCLAMVFCAESPH  233 (302)
Q Consensus       213 ~~~~~~~~~~~~~~~~pe~~~  233 (302)
                      ++++..+++++.+..++..|.
T Consensus       180 ~a~~v~l~~i~~~~~l~k~~~  200 (437)
T TIGR00939       180 TPCVVQLICIVCYLLLPKLPF  200 (437)
T ss_pred             HHHHHHHHHHHHHHHHhcCHH
Confidence            556666666666767777654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.59  E-value=0.011  Score=55.81  Aligned_cols=77  Identities=10%  Similarity=0.108  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHhhhhccchhhhhhhh-hcccCCcchhhHHHHHHHHH-HHHHHHHHHHhhhhhhh--HHHHHHHHHHHHH
Q 022133           54 LVATLSSFLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLG-GAFIGSTLSGWIADGVG--RRRAFQLCALPMI  129 (302)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~G--rr~~~~~~~~~~~  129 (302)
                      +...+..++.......+..++|.+.+ .+|++..+.  +++.+...+ +.+++.+++|+++||++  .|..+.++.++..
T Consensus       333 ~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~a--g~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~  410 (633)
T TIGR00805       333 MLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEA--NFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLST  410 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH--HHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHH
Confidence            33444444444444555667776655 578776655  777776665 56899999999999998  5566666666555


Q ss_pred             HHH
Q 022133          130 IGA  132 (302)
Q Consensus       130 i~~  132 (302)
                      ++.
T Consensus       411 ~~~  413 (633)
T TIGR00805       411 LSY  413 (633)
T ss_pred             HHH
Confidence            553

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.51  E-value=0.005  Score=55.23  Aligned_cols=72  Identities=13%  Similarity=0.168  Sum_probs=56.9

Q ss_pred             HHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHH
Q 022133          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (302)
Q Consensus       148 r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~  220 (302)
                      -++.|++.-.......+.-+|...++.++.+.++++....++..++|++........| .|+...+.+...++
T Consensus       395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g-~~~v~~~~~~~~l~  466 (488)
T KOG2325|consen  395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG-PRPVWIILLCLLLV  466 (488)
T ss_pred             hheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC-ccHHHHHHHHHHHH
Confidence            4556666666666777888999999999999999999999999999999988888877 56666554443333

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=96.34  E-value=0.0055  Score=54.12  Aligned_cols=126  Identities=21%  Similarity=0.156  Sum_probs=70.5

Q ss_pred             cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHH----HHHHHHHH-------HHHHHHHHHh-hcchhHHHHHHH
Q 022133           81 LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR----RAFQLCAL-------PMIIGASISA-TTRNLIGMLLGR  148 (302)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr----~~~~~~~~-------~~~i~~~~~~-~~~~~~~~~~~r  148 (302)
                      .|.+.+..  .++..++..+..+|.+++|.++|++-|+    ....+.-+       +.+...++.. ...+...+.+..
T Consensus       278 ~~~~~~~~--~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il  355 (493)
T KOG1330|consen  278 IGFDHNAT--LIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLIL  355 (493)
T ss_pred             hCCccccc--hhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHH
Confidence            34444444  4677777888899999999999994331    11111111       1111111111 122222222333


Q ss_pred             HHHhhhhcch-hhhHHHHhhhcCCCCccchhHhH-HHHHHHHHHHHHHHHhhcccccCcchH
Q 022133          149 FVVGTGMGLG-PTVAALYVTEVSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWR  208 (302)
Q Consensus       149 ~~~g~~~~~~-~~~~~~~~~e~~p~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~g~w~  208 (302)
                      ++.|...... .....-+..|..|++.|.++.++ ......+|.+-+|.+-|.+.++.-.|+
T Consensus       356 ~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  356 FLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            4444433322 33344567788999999999999 455667777777767677765542244

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.29  E-value=0.0036  Score=56.25  Aligned_cols=81  Identities=25%  Similarity=0.329  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHHHHHH
Q 022133           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA-LPMIIGAS  133 (302)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~-~~~~i~~~  133 (302)
                      .+=+..+..+...+.+.+.++.+.+++|++.++.  |.++..--+..+++.|++|+++||+-+|+.++++. +....+.+
T Consensus        15 ~~k~f~~~~~~~~g~l~pll~vy~kQLGl~p~~~--Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~f   92 (618)
T KOG3762|consen   15 VAKLFYLFFGARFGSLFPLLAVYFKQLGLNPAVV--GTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATF   92 (618)
T ss_pred             eeeeeeeeeeecccccchHHHHHHHHcCCCHHHh--hhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            3334444555566678889999999999988776  88999888999999999999999998766665554 45555555


Q ss_pred             HHhh
Q 022133          134 ISAT  137 (302)
Q Consensus       134 ~~~~  137 (302)
                      +..+
T Consensus        93 ll~f   96 (618)
T KOG3762|consen   93 LLVF   96 (618)
T ss_pred             heee
Confidence            5554

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=96.26  E-value=0.0046  Score=52.57  Aligned_cols=154  Identities=13%  Similarity=0.104  Sum_probs=108.7

Q ss_pred             hcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchh
Q 022133           80 DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP  159 (302)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~  159 (302)
                      +.|++.++.. .-+.-...-.+.+.-.+.=.+.|..--|++++.-.+...+.-.+..+.++.+.+=+.-++.|...+. .
T Consensus        35 ~~NlT~~~l~-~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-E  112 (433)
T KOG3810|consen   35 DKNLTEDQLT-NEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-E  112 (433)
T ss_pred             CCCccHHHHh-cccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH-H
Confidence            4455544331 2222333344556666777789998889988887777777777777888888887888888886543 4


Q ss_pred             hhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcc-hHHHHHHhHHHHHHHHHHhhccCCChHHH
Q 022133          160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-WRICFWVSIVPAAILCLAMVFCAESPHWL  235 (302)
Q Consensus       160 ~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~-w~~~~~~~~~~~~~~~~~~~~~pe~~~~~  235 (302)
                      ...++++-+..+++++.+..+....+.-.|-+.|..++..+...... +...-.+......++.+..+++|..++..
T Consensus       113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl  189 (433)
T KOG3810|consen  113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSL  189 (433)
T ss_pred             HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhh
Confidence            56778888888999999999999988888988888888877654431 34444556566666777778888765443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.20  E-value=0.015  Score=52.04  Aligned_cols=145  Identities=12%  Similarity=0.042  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhhhhccchhhhhhhhh--cccCCcchhhHHHH--HH-HHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHH
Q 022133           55 VATLSSFLFGYHLGVVNEPLESISLD--LGFNGNTLAEGLVV--SM-CLGGAFIGSTLSGWIADGVGRRRAFQLCA-LPM  128 (302)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~-~~~~~~i~~~~~g~l~d~~Grr~~~~~~~-~~~  128 (302)
                      ++.+.++++|.-.+......|.+.++  -+.+.++.  |...  +. +.+=-.-+.++=...+.|+|||+.-++=. .+.
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~--~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~   81 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQ--AIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS   81 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccccCCCChhHh--eeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence            45566777777776665667777766  45555543  2111  11 11111223333444555899998765432 222


Q ss_pred             HHHHHHHhhcc----------------------hh--HHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHH
Q 022133          129 IIGASISATTR----------------------NL--IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQI  184 (302)
Q Consensus       129 ~i~~~~~~~~~----------------------~~--~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~  184 (302)
                      ++.++..+...                      +.  ..+.+..++.-+.++..-.+.-...-.+..++.++.+......
T Consensus        82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv  161 (544)
T PF13000_consen   82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV  161 (544)
T ss_pred             HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence            22222222111                      01  1122222233333333333444455567788889999988888


Q ss_pred             HHHHHHHHHHHHhhccc
Q 022133          185 ATCLGLMGSLLIGIPVK  201 (302)
Q Consensus       185 ~~~~g~~~~~~~~~~~~  201 (302)
                      +...|.+++..+.-.+.
T Consensus       162 G~~~Gyfls~tvFlaln  178 (544)
T PF13000_consen  162 GQTAGYFLSFTVFLALN  178 (544)
T ss_pred             HhhhhHHHHHHHHHhhC
Confidence            88999888877665554

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=95.17  E-value=0.0066  Score=51.93  Aligned_cols=107  Identities=19%  Similarity=0.206  Sum_probs=3.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHH--HHHHHHHHHhh----------cchhHHHHHHHHHHhhhhcchh
Q 022133           93 VVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCAL--PMIIGASISAT----------TRNLIGMLLGRFVVGTGMGLGP  159 (302)
Q Consensus        93 ~~~~~~~~~~i~~~~~g~l~d~-~Grr~~~~~~~~--~~~i~~~~~~~----------~~~~~~~~~~r~~~g~~~~~~~  159 (302)
                      ....++++-.+|..+.++.--+ -.+|.+.+.+..  +.+...+++..          .++-+..++..++.|+..|-..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~  266 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS  266 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence            4567888888888887764211 134444433221  11111122211          2344556777889999999998


Q ss_pred             hhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhc
Q 022133          160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (302)
Q Consensus       160 ~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~  199 (302)
                      +....+..+..++++|..+..+...+..+|..+|..++-.
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             HHHH------------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999888888888888888776544

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.13  E-value=0.0057  Score=56.38  Aligned_cols=148  Identities=18%  Similarity=0.213  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHhhhhccchhhhhhhh-hcccCCcchhhHHHHHHHHH-HHHHHHHHHHhhhhhhh--HHHHHHHHHHHHH
Q 022133           54 LVATLSSFLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLG-GAFIGSTLSGWIADGVG--RRRAFQLCALPMI  129 (302)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~G--rr~~~~~~~~~~~  129 (302)
                      +...++..........+..++|.+.+ +|+.+.+.+  +++..+..+ +.++|.+++|++..|+.  .|..+....+...
T Consensus       308 ~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A--~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~  385 (539)
T PF03137_consen  308 MCLILAGVFESFIVSGFATFLPKYLESQFGLSASQA--SLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSI  385 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHH
Confidence            34444444555555556677776654 577776665  556555544 67899999999999874  3444444443333


Q ss_pred             HHHHHHh---h--cc-------------------------------------------------hhHHHHHHHHHHhhhh
Q 022133          130 IGASISA---T--TR-------------------------------------------------NLIGMLLGRFVVGTGM  155 (302)
Q Consensus       130 i~~~~~~---~--~~-------------------------------------------------~~~~~~~~r~~~g~~~  155 (302)
                      ++.+...   +  ++                                                 .+..+++..++.-+..
T Consensus       386 v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~  465 (539)
T PF03137_consen  386 VSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFT  465 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHH
Confidence            3322200   0  00                                                 0112223333333333


Q ss_pred             cchhhhHHHHhhhcCCCCccchhHhHHH-HHHHHHHHHHHHHhhccccc
Q 022133          156 GLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEI  203 (302)
Q Consensus       156 ~~~~~~~~~~~~e~~p~~~R~~~~~~~~-~~~~~g~~~~~~~~~~~~~~  203 (302)
                      +.........+-.-.|+++|+.++|+.. ....+|.+=+|++.|.+.+.
T Consensus       466 ~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  466 FMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             -------------------------------------------------
T ss_pred             HhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            3333344444556778899999999954 45566777788888887764

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=94.99  E-value=0.19  Score=42.66  Aligned_cols=73  Identities=12%  Similarity=0.113  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcC
Q 022133           97 CLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS  170 (302)
Q Consensus        97 ~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~  170 (302)
                      ..+.-+.++++.+.+..++|-|.++.++........ ..-+-+.+..++-.-.+.|++.+..+....+|++++-
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence            334455777778899999999999988877765532 2223466777888888999999888777777776654

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=94.92  E-value=0.81  Score=40.57  Aligned_cols=91  Identities=14%  Similarity=0.004  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH--HHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhh
Q 022133           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA--LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e  168 (302)
                      |.+-++..+.++++.+..|++..++.+..-+..+.  ++.+...++++..++.+..+++.++.+.......+....-++.
T Consensus       288 G~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~  367 (412)
T PF01770_consen  288 GAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAK  367 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888888889999999999977777755544443  3445555677788899988888888877666666665555555


Q ss_pred             cCCCCccchhHhH
Q 022133          169 VSPPFVRGTYGAF  181 (302)
Q Consensus       169 ~~p~~~R~~~~~~  181 (302)
                      -...+.-|...|+
T Consensus       368 ~l~~e~yaLVFGi  380 (412)
T PF01770_consen  368 NLSEERYALVFGI  380 (412)
T ss_pred             hccccceeeeeee
Confidence            5554544544444

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.11  E-value=0.29  Score=42.99  Aligned_cols=107  Identities=15%  Similarity=0.100  Sum_probs=75.8

Q ss_pred             HHHHH-HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh-------hcchhHHHHHHHHHHhhhhcchhhhHH
Q 022133           92 LVVSM-CLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA-------TTRNLIGMLLGRFVVGTGMGLGPTVAA  163 (302)
Q Consensus        92 ~~~~~-~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~r~~~g~~~~~~~~~~~  163 (302)
                      ....+ +++.-.+|.+.+.++-+.=.|+.......=...+..+.+.       .-.+-+.+++...+.|+..|-..++..
T Consensus       286 ~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl~m  365 (406)
T KOG1479|consen  286 LLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSLIM  365 (406)
T ss_pred             HHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhhee
Confidence            44555 8888888877777776654444433333333333333321       234566778888999999998888888


Q ss_pred             HHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhh
Q 022133          164 LYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI  198 (302)
Q Consensus       164 ~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~  198 (302)
                      .+..+..|++++-.+..+...+...|.+.|..++.
T Consensus       366 ~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~  400 (406)
T KOG1479|consen  366 MYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW  400 (406)
T ss_pred             hhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            89999999999998888888888888888877654

>TIGR00806 rfc RFC reduced folate carrier

Probab=92.74  E-value=0.94  Score=41.07  Aligned_cols=94  Identities=7%  Similarity=-0.058  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH--HHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhh
Q 022133           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ--LCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e  168 (302)
                      |.+-++..+..+++.+..|++-.++.+---+.  +..++.+...++++.++|.+..+++.++.+.......++...-++.
T Consensus       301 G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~  380 (511)
T TIGR00806       301 GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIAS  380 (511)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67778888888899999999987775533333  3344455556677888999999999999998888887777777777


Q ss_pred             cCCCCccchhHhHHHH
Q 022133          169 VSPPFVRGTYGAFIQI  184 (302)
Q Consensus       169 ~~p~~~R~~~~~~~~~  184 (302)
                      -...+.-|...|+.+.
T Consensus       381 ~L~~~~~aLvFGiNtf  396 (511)
T TIGR00806       381 SLSKELCALVFGINTF  396 (511)
T ss_pred             HhcccceEEEEecHHH
Confidence            7666666777776443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=91.78  E-value=8.2  Score=33.55  Aligned_cols=134  Identities=16%  Similarity=0.089  Sum_probs=73.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH----HHHHHH---HHHHHHHhh--cchhHHHHHHHHHHhhhhcc
Q 022133           87 TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ----LCALPM---IIGASISAT--TRNLIGMLLGRFVVGTGMGL  157 (302)
Q Consensus        87 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~----~~~~~~---~i~~~~~~~--~~~~~~~~~~r~~~g~~~~~  157 (302)
                      -.+++.+++.+.....+|+.+.-++.|---.-+.+.    .|++..   .+..+.+++  .++.+.++++-.+.|.-.|+
T Consensus        42 Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~LVG~  121 (508)
T COG4262          42 ILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVLVGA  121 (508)
T ss_pred             eeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHHHhc
Confidence            344478999999999999999988887543322221    222221   111112222  24566778888889988888


Q ss_pred             hhhhHHHHhhh-cCCCCccchhHhHHHHHHHHHHHHHHHHhhccc-ccCcchHHHHHHhHHHHHHHHH
Q 022133          158 GPTVAALYVTE-VSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-EIAGWWRICFWVSIVPAAILCL  223 (302)
Q Consensus       158 ~~~~~~~~~~e-~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~w~~~~~~~~~~~~~~~~  223 (302)
                      -.|....+... ....+.-   .+.....--+|...+.++.+++. ...|.-|..+..+.+..+.+++
T Consensus       122 EiPL~mrml~~r~a~~k~~---~s~vl~~DYLGal~~gLl~p~lllP~LGl~rta~laG~~Nl~aAvv  186 (508)
T COG4262         122 EIPLLMRMLQRRQAKAKDL---GSRVLTLDYLGALAGGLLWPFLLLPRLGLVRTAALAGLCNLAAAVV  186 (508)
T ss_pred             chHHHHHHHHHHHHHHHhh---hhhhhhhHhhhhhhHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHH
Confidence            88888777665 2222221   22222234556655555555432 3344455555554444444433

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=89.22  E-value=2  Score=36.46  Aligned_cols=72  Identities=14%  Similarity=0.079  Sum_probs=59.8

Q ss_pred             HHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccc
Q 022133          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (302)
Q Consensus       130 i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  201 (302)
                      +...+..+.++++..++.-+.-|+-.|..+.-.+--+.+-.++++|-.+++....+.++|..++.+++-.+-
T Consensus       331 ~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh  402 (409)
T KOG3880|consen  331 LLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH  402 (409)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence            334456678999988888999999888888888777888788899999999999999999999888876543

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=87.98  E-value=0.39  Score=42.80  Aligned_cols=128  Identities=16%  Similarity=-0.042  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhc--
Q 022133           92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV--  169 (302)
Q Consensus        92 ~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~--  169 (302)
                      |-..+..+...+.+....++++|+|-|+.+..+.....++..+.++.++.......+...|+-.+....+.+..+++.  
T Consensus       336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~  415 (498)
T KOG0637|consen  336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAI  415 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHH
Confidence            334455556668999999999999966666666665666666666666666666666666644444433333333221  


Q ss_pred             -------------------CCC--CccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHH
Q 022133          170 -------------------SPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (302)
Q Consensus       170 -------------------~p~--~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~  219 (302)
                                         ...  .-+|...|+.+....+..++..+..|.+.+..|.-+.+.+..++.++
T Consensus       416 ~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~  486 (498)
T KOG0637|consen  416 LGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVAL  486 (498)
T ss_pred             hCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHH
Confidence                               111  12344555566666666666555556555555434555444443333

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=87.24  E-value=0.18  Score=43.12  Aligned_cols=80  Identities=14%  Similarity=0.076  Sum_probs=0.0

Q ss_pred             HHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhh---cccccCc-chHHHHHHhHHHHHHHHHH
Q 022133          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI---PVKEIAG-WWRICFWVSIVPAAILCLA  224 (302)
Q Consensus       149 ~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~g-~w~~~~~~~~~~~~~~~~~  224 (302)
                      ++.|++.+........+.+. +|++.-    ..+..+.++++++..++.-   ...+... .-...|.++.+..+++++.
T Consensus         5 ~~~~~~~~~~q~s~~glas~-~p~~y~----~a~~~Gq~~aGv~~s~l~ii~~~~~~~~~~~a~~yF~~a~~i~i~~~~~   79 (309)
T PF01733_consen    5 ALIGFANAVLQSSLFGLASL-FPPKYT----QAVMIGQGLAGVIVSLLRIITKASGSDVKTSAFIYFIIAVLIVILCIIL   79 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEHhhhHHHhccHHHHHhc-CCHHHH----HHHHhhccHHHHHHHHHHHHHHHhhhccchhhhhHHHHHHHHHHHHHHH
Confidence            45666777777777777775 554432    2222333344433333222   1111111 0123444455555556666


Q ss_pred             hhccCCChH
Q 022133          225 MVFCAESPH  233 (302)
Q Consensus       225 ~~~~pe~~~  233 (302)
                      ++.++..|.
T Consensus        80 ~~~l~~~~~   88 (309)
T PF01733_consen   80 YFILPRSPF   88 (309)
T ss_dssp             ---------
T ss_pred             HHHhccChH
Confidence            666766543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=87.07  E-value=16  Score=30.68  Aligned_cols=96  Identities=16%  Similarity=0.191  Sum_probs=64.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhH--HHHHHHHHHHHHHHHHHHhh----cc---hhHHHHHHHHHHhhhhcchhh
Q 022133           90 EGLVVSMCLGGAFIGSTLSGWIADGVGR--RRAFQLCALPMIIGASISAT----TR---NLIGMLLGRFVVGTGMGLGPT  160 (302)
Q Consensus        90 ~~~~~~~~~~~~~i~~~~~g~l~d~~Gr--r~~~~~~~~~~~i~~~~~~~----~~---~~~~~~~~r~~~g~~~~~~~~  160 (302)
                      -|.+.+.+++...+|+-+...+..|-..  .+.+.+...+.+....+..+    ++   +...-+++.++.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            3788899999888888888777665433  23444444444433332222    22   233335566667777888999


Q ss_pred             hHHHHhhhcCCCCccchhHhHHHHH
Q 022133          161 VAALYVTEVSPPFVRGTYGAFIQIA  185 (302)
Q Consensus       161 ~~~~~~~e~~p~~~R~~~~~~~~~~  185 (302)
                      ....+=+...|.+.|++.+-++..-
T Consensus       364 SimkmRsqyIPEearstimNfFRvP  388 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVP  388 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheech
Confidence            9989999999999999888775543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=85.67  E-value=9  Score=27.29  Aligned_cols=41  Identities=27%  Similarity=0.424  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 022133           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~  131 (302)
                      +.......++..++..+.+.+.|..|.+..+.+...+..++
T Consensus        90 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        90 GLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA  130 (141)
T ss_pred             HHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence            56666677777888888888888887766665554444333

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=85.19  E-value=1.8  Score=36.75  Aligned_cols=133  Identities=14%  Similarity=0.034  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhh--hHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhh
Q 022133           91 GLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~g~l~d~~--Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e  168 (302)
                      |.+..+-.+-..+.-+.+....||+  |.|.  .+..++.+.+.++.+++++.++-+.+.++..++.|....... -++.
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri--~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL-~lss  141 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRI--ALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFL-ALSS  141 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHH--HHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehh-hhhc
Confidence            4555555566667777778888875  5554  344555666777778888888888888888888877764333 3333


Q ss_pred             cCCCCccchhHhHHHHHHHHHHHHHHHHhhcccc--cCcchHHHHHH-hHHHHHHHHHHhhccCCC
Q 022133          169 VSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE--IAGWWRICFWV-SIVPAAILCLAMVFCAES  231 (302)
Q Consensus       169 ~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~g~w~~~~~~-~~~~~~~~~~~~~~~pe~  231 (302)
                      .+|+..-+    .++.+.+.++++|..-...+.+  ..+ -|...++ ..++++.++..++.++++
T Consensus       142 ~Y~~~~i~----~WSSGTGgAGliGa~SYa~lT~~~~~s-pk~Tlli~l~lP~lfa~~yf~lL~~p  202 (409)
T KOG3880|consen  142 RYPSIVIA----GWSSGTGGAGLIGASSYAFLTSWANLS-PKSTLLIMLFLPALFAFAYFFLLKSP  202 (409)
T ss_pred             cCCCceec----cccCCCCcchhhhhhHHHHHhhhcCCC-hhhHHHHHHHHHHHHHHHHHheeCCC
Confidence            44443222    2222222233344333333333  223 2444444 445555555555555443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=83.81  E-value=12  Score=34.18  Aligned_cols=53  Identities=13%  Similarity=0.158  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHH
Q 022133          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL  194 (302)
Q Consensus       142 ~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~  194 (302)
                      ..+++..++..+.....+....++-+.+..|..-|+.|.+.++..++|+--..
T Consensus       406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~  458 (544)
T PF13000_consen  406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPR  458 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchH
Confidence            34444556666666666777788889999999999999999998887764433

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=82.34  E-value=40  Score=30.85  Aligned_cols=68  Identities=13%  Similarity=0.063  Sum_probs=48.9

Q ss_pred             HHHHHHhhhhcchhhhHHHHhhhcCCC-CccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHh
Q 022133          146 LGRFVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (302)
Q Consensus       146 ~~r~~~g~~~~~~~~~~~~~~~e~~p~-~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~  214 (302)
                      +.-++.|+.....+...-..+.|.+|. ++|...+|-++...++..++..++++.+.+..| |.....+.
T Consensus       271 ~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~G-w~~~a~i~  339 (472)
T TIGR00769       271 LLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYG-WLTAALIT  339 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence            344556666666676666778888875 467888888888777777666666688888888 87766554

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=81.24  E-value=2.5  Score=34.86  Aligned_cols=56  Identities=9%  Similarity=0.036  Sum_probs=33.6

Q ss_pred             CccchhHhHHHHHHHHHHHHHHHHhhcc---cc-cCcchHHHHHHhHHHHHHHHHHhhcc
Q 022133          173 FVRGTYGAFIQIATCLGLMGSLLIGIPV---KE-IAGWWRICFWVSIVPAAILCLAMVFC  228 (302)
Q Consensus       173 ~~R~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~g~w~~~~~~~~~~~~~~~~~~~~~  228 (302)
                      +.|+....+...+..+|+++........   .+ ....|++.+.+.+++.++-++.+.++
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566666667777888877654443222   11 11238988888777766655555444

>PRK10263 DNA translocase FtsK; Provisional

Probab=80.44  E-value=20  Score=36.70  Aligned_cols=22  Identities=18%  Similarity=0.033  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhH
Q 022133           96 MCLGGAFIGSTLSGWIADGVGR  117 (302)
Q Consensus        96 ~~~~~~~i~~~~~g~l~d~~Gr  117 (302)
                      +-+.++.+|..+...+..-||-
T Consensus        60 V~Nl~GiVGA~LAD~L~~LFGl   81 (1355)
T PRK10263         60 IHNLGGMPGAWLADTLFFIFGV   81 (1355)
T ss_pred             cccccchHHHHHHHHHHHHHhH
Confidence            3445556666666666666664

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=80.03  E-value=28  Score=27.68  Aligned_cols=20  Identities=25%  Similarity=0.383  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 022133           92 LVVSMCLGGAFIGSTLSGWI  111 (302)
Q Consensus        92 ~~~~~~~~~~~i~~~~~g~l  111 (302)
                      .......++..+|..+.+.+
T Consensus        50 ~~~~~~i~~F~~G~~~~~~i   69 (209)
T PF06912_consen   50 LRYLLAILSFILGAFLAGLI   69 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444555666777777777

The function of this family is unknown although a few members are thought to be membrane proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	302
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		2e-16

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 112/262 (42%), Gaps = 32/262 (12%)
Query: 41  NTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISL------DLGFNGNTLAEGLVV 94
           NT  +    F   LVATL   LFGY   V++  +ES++       +L  +      G  V
Sbjct: 2   NTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCV 61
Query: 95  SMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA---------TTRNLIGML 145
           +  L G  IG  L G+ ++  GRR + ++ A+   I    SA            N + + 
Sbjct: 62  ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVY 121
Query: 146 LG---------RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI 196
           L          R + G G+GL   ++ +Y+ E++P  +RG   +F Q A   G +    +
Sbjct: 122 LAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCV 181
Query: 197 G--IPVKEIAGW-----WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFE 249
              I     A W     WR  F    +PA +  + +    ESP WL  +G+  +AE    
Sbjct: 182 NYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILR 241
Query: 250 KLLGGSHVKSSLAELS-KLDRG 270
           K++G +    ++ E+   LD G
Sbjct: 242 KIMGNTLATQAVQEIKHSLDHG 263
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	6e-09
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-05
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-04
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	6e-04

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 55.7 bits (134), Expect = 6e-09
 Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 5/172 (2%)

Query: 29  TTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTL 88
           T+   Q+   V+      +       +     FL+     + +  L        F     
Sbjct: 4   TSIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLND-ILLPQ-FQQAFTLTNF 61

Query: 89  AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTRNLIGML 145
             GL+ S    G FI    +G +   +  +           +GA++   +A   N    L
Sbjct: 62  QAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFL 121

Query: 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG 197
           +G F++  G+G   T A  +VT + P           Q     G + +++ G
Sbjct: 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 24/169 (14%)

Query: 91  GLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPMIIGASI--------SATTRN 140
                +       G+ L GW++D V  G R A  +  + ++  A+I        + T   
Sbjct: 291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350

Query: 141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLG--LMGSLLIGI 198
           +  +++G  + G  M +G     L+  E++P    GT   F  +   LG  +  S ++G 
Sbjct: 351 ICMIVIGFLIYGPVMLIG-----LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405

Query: 199 PVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAE 247
            V    GW        +V      LA++        + +K R  +   E
Sbjct: 406 TVDFF-GW----DGGFMVMIGGSILAVILLI--VVMIGEKRRHEQLLQE 447

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 23/152 (15%), Positives = 44/152 (28%), Gaps = 8/152 (5%)

Query: 103 IGSTLSGWIADGVGRRRAFQ----LCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLG 158
               + G ++D    R        L A  M+    +   T ++  M +  F+ G   G+G
Sbjct: 77  FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 136

Query: 159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM-GSLLIGIPVKEIAGWWRICFWVSIVP 217
                  +        RG   +    A  +G     LL  + +     W     ++    
Sbjct: 137 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDW-HAALYMPAFC 195

Query: 218 AAILCLAMVFCAESPHWLYKKGRTAEAEAEFE 249
           A ++ L               G     E + +
Sbjct: 196 AILVALFAFAMMRDTPQ--SCGLPPIEEYKND 225

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 1/145 (0%)

Query: 83  FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLI 142
            N    A   V+   L    +     G I+D VGRR    +     ++   ++ TT +L 
Sbjct: 30  LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT 89

Query: 143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE 202
            ++    + G G G+G  +A     ++          + + +   +  + + LIG  +  
Sbjct: 90  VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT 149

Query: 203 IAGWWRICFWVSIVPAAILCLAMVF 227
           +   WR C+   +V  A +  +M  
Sbjct: 150 MWN-WRACYLFLLVLCAGVTFSMAR 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.91
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.9
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.87
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.83
2xut_A	524	Proton/peptide symporter family protein; transport	99.78
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.77
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.65
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.54
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.53
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.52
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.48
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.19
2xut_A	524	Proton/peptide symporter family protein; transport	99.03

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.95  E-value=2.7e-27  Score=213.33  Aligned_cols=210  Identities=27%  Similarity=0.498  Sum_probs=179.1

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCC------cchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 022133           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNG------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA  120 (302)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~  120 (302)
                      +..+...++..++.++.+++.++++..++.+.++++.+.      +....|++.+++.+|.++|++++|+++||+|||++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~   87 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            334445556677889999999999999998888775432      22345789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh------------------hcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHH
Q 022133          121 FQLCALPMIIGASISA------------------TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFI  182 (302)
Q Consensus       121 ~~~~~~~~~i~~~~~~------------------~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~  182 (302)
                      ++++.++..++.++++                  ++++++.++++|+++|++.|+..+..+.+++|+.|+++|++..++.
T Consensus        88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~  167 (491)
T 4gc0_A           88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN  167 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence            9999999999999887                  4678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccccC-------cchHHHHHHhHHHHHHHHHHhhccCCChHHHHHhCCHHHHHHHHHHHhCCC
Q 022133          183 QIATCLGLMGSLLIGIPVKEIA-------GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGS  255 (302)
Q Consensus       183 ~~~~~~g~~~~~~~~~~~~~~~-------g~w~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~  255 (302)
                      +.+..+|.++++.++..+....       .+||..+.+..+..++.++..+++||+|+|+..+++.+++.+.+++...++
T Consensus       168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~  247 (491)
T 4gc0_A          168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT  247 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence            9999999999888877654322       238888888888888888889999999999999999999888888766544


Q ss_pred             c
Q 022133          256 H  256 (302)
Q Consensus       256 ~  256 (302)
                      +
T Consensus       248 ~  248 (491)
T 4gc0_A          248 L  248 (491)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.91  E-value=1.9e-23  Score=185.26  Aligned_cols=181  Identities=15%  Similarity=0.176  Sum_probs=157.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 022133           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (302)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~  128 (302)
                      .+..+..+.+..+..++......+..|.+.+++|.+..+.  |++.+++.++.+++++++|+++||+|||++++++.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~  101 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence            3445666677777788888888899999999999887765  89999999999999999999999999999999999999


Q ss_pred             HHHHHHH---hhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccc-ccC
Q 022133          129 IIGASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-EIA  204 (302)
Q Consensus       129 ~i~~~~~---~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~  204 (302)
                      +++.+++   +++++++.++++|++.|++.+...+...++++|++|+++|++++++.+.+..+|.+++|.+++.+. +..
T Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  181 (438)
T 3o7q_A          102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred             HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999988   788999999999999999999999999999999999999999999999999999999999999988 655


Q ss_pred             cc------------------------hHHHHHHhHHHHHHHHHHhhc--cCCC
Q 022133          205 GW------------------------WRICFWVSIVPAAILCLAMVF--CAES  231 (302)
Q Consensus       205 g~------------------------w~~~~~~~~~~~~~~~~~~~~--~pe~  231 (302)
                      +.                        ||+.|++.++..++..+..++  .||+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~  234 (438)
T 3o7q_A          182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPAL  234 (438)
T ss_dssp             CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            54                        899997766555554444433  3554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.90  E-value=1.3e-23  Score=187.02  Aligned_cols=183  Identities=13%  Similarity=0.053  Sum_probs=160.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 022133           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (302)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~  127 (302)
                      ..++.+....++.+..++....+.+.+|.+.+++ .+..+.  |++.+++.++..++++++|+++||+|||++++++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~  101 (451)
T 1pw4_A           25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  101 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH--HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence            3455566777778888888888889999999998 777666  8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh----cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccccc
Q 022133          128 MIIGASISAT----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (302)
Q Consensus       128 ~~i~~~~~~~----~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~  203 (302)
                      .+++.+++++    +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  181 (451)
T 1pw4_A          102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  181 (451)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999    899999999999999999999999999999999999999999999999999999999999887765


Q ss_pred             CcchHHHHHHhHHHHHHH-HHHhhccCCChH
Q 022133          204 AGWWRICFWVSIVPAAIL-CLAMVFCAESPH  233 (302)
Q Consensus       204 ~g~w~~~~~~~~~~~~~~-~~~~~~~pe~~~  233 (302)
                      .+.||+.|++.+++.++. ++.++++||+|+
T Consensus       182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            544899998877766654 445567888764

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.87  E-value=3e-22  Score=174.21  Aligned_cols=176  Identities=17%  Similarity=0.227  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 022133           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (302)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~  133 (302)
                      ..+.+..+..++......+.+|.+.+++|.+..+.  +++.+++.++..++++++|+++||+|||++++.+.++.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH--HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence            34556667777777888888999999999877665  8999999999999999999999999999999999999999999


Q ss_pred             HHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHH
Q 022133          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (302)
Q Consensus       134 ~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~  213 (302)
                      +.+++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+ ||+.|++
T Consensus        81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~  159 (375)
T 2gfp_A           81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLF  159 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999988777 9999998


Q ss_pred             hHHHHHHHHH-HhhccCCCh
Q 022133          214 SIVPAAILCL-AMVFCAESP  232 (302)
Q Consensus       214 ~~~~~~~~~~-~~~~~pe~~  232 (302)
                      .++..++..+ ..+++||++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~  179 (375)
T 2gfp_A          160 LLVLCAGVTFSMARWMPETR  179 (375)
T ss_dssp             HHHHHHHHHCCCCCSSCCCS
T ss_pred             HHHHHHHHHHHHHHHCcccC
Confidence            7777666555 456678763

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.83  E-value=7.5e-20  Score=164.65  Aligned_cols=169  Identities=15%  Similarity=0.160  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHhhhhccchhhhhh-hhh-----cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHH
Q 022133           55 VATLSSFLFGYHLGVVNEPLESI-SLD-----LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALP  127 (302)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grr~~~~~~~~~  127 (302)
                      .+.+..+...+........++.+ .++     +|.+..+.  +++.+++.++.+++++++|+++|| +|||++++.+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~   94 (491)
T 4aps_A           17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATA--ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVL   94 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            33444444444444443444433 333     77766655  899999999999999999999999 8999999999999


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCc--cchhHhHHHHHHHHHHHHHHHHhhcccccCc
Q 022133          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (302)
Q Consensus       128 ~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  205 (302)
                      .+++.++++++++++.++++|++.|++.+...+...++++|++|+++  |+.++++++.+..+|..++|.+++.+.+..+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  174 (491)
T 4aps_A           95 IMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG  174 (491)
T ss_dssp             HHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999998  7777888999999999999999999988888


Q ss_pred             chHHHHHHhHHHHHHHHHHhh
Q 022133          206 WWRICFWVSIVPAAILCLAMV  226 (302)
Q Consensus       206 ~w~~~~~~~~~~~~~~~~~~~  226 (302)
                       ||+.|++.++..+++++..+
T Consensus       175 -~~~~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          175 -YHVAFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHH
Confidence             99999987766666555443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.78  E-value=5.2e-18  Score=153.92  Aligned_cols=167  Identities=16%  Similarity=0.148  Sum_probs=139.5

Q ss_pred             HHHHHHHhhhhccchhhhh-hhhhcc------cCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHH
Q 022133           58 LSSFLFGYHLGVVNEPLES-ISLDLG------FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMI  129 (302)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-Grr~~~~~~~~~~~  129 (302)
                      +..++..+..+...+.++. +.+++|      ++..+.  +++.+++.++..++++++|+++||+ |||++++++.++.+
T Consensus        19 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~   96 (524)
T 2xut_A           19 ASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVA--KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC   96 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTH--HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            3344444444444445544 456677      776665  8999999999999999999999999 99999999999999


Q ss_pred             HHHHHHhhcc-hhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhH---HHHHHHHHHHHHHHHhhcccccCc
Q 022133          130 IGASISATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF---IQIATCLGLMGSLLIGIPVKEIAG  205 (302)
Q Consensus       130 i~~~~~~~~~-~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~g  205 (302)
                      ++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+.   ++.+..+|.+++|.+++.+.+..+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  176 (524)
T 2xut_A           97 VGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG  176 (524)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999988 999999999999999999999999999999999999877666   888999999999999999888777


Q ss_pred             chHHHHHHhHHHHHHHHHHhhc
Q 022133          206 WWRICFWVSIVPAAILCLAMVF  227 (302)
Q Consensus       206 ~w~~~~~~~~~~~~~~~~~~~~  227 (302)
                       |++.|++.++..++.++..++
T Consensus       177 -~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          177 -AAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHS
T ss_pred             -HHHHHHHHHHHHHHHHHHHHH
Confidence             999999887776666555444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.77  E-value=1.2e-18  Score=156.65  Aligned_cols=183  Identities=20%  Similarity=0.132  Sum_probs=123.5

Q ss_pred             HHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc--
Q 022133           61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT--  138 (302)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~--  138 (302)
                      +......+.+..+.+.+.+..+.+....  ........+...++.++.+++.||+|||+.++.+..+.+++.+..+..  
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~  364 (491)
T 4gc0_A          287 FQQFVGINVVLYYAPEVFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY  364 (491)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSSCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHhcchHHHHhcCCCccch--hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence            3333344455667777777766654443  456666777888999999999999999999999988887777655432  


Q ss_pred             ---chhHHHHHHH-HHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCc-----chHH
Q 022133          139 ---RNLIGMLLGR-FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-----WWRI  209 (302)
Q Consensus       139 ---~~~~~~~~~r-~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g-----~w~~  209 (302)
                         ++...++... +..+++. +..++.+.+.+|++|++.|++++++......+|.++++.+.+.+.+...     .+..
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~  443 (491)
T 4gc0_A          365 TQAPGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGF  443 (491)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCH
T ss_pred             cccchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence               2222222222 2222322 3346778999999999999999999999999999988888776654221     0334


Q ss_pred             HHHHhHHHHHH-HHHHhhccCCChHHHHHhCCHHHHHHHHHHHhCCC
Q 022133          210 CFWVSIVPAAI-LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGS  255 (302)
Q Consensus       210 ~~~~~~~~~~~-~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~  255 (302)
                      .|++.++++++ .++.++++|||      |+++.|   +++++++++
T Consensus       444 ~~~i~~~~~~~~~i~~~~~~PET------kg~tLe---ei~~~f~~~  481 (491)
T 4gc0_A          444 SYWIYGCMGVLAALFMWKFVPET------KGKTLE---ELEALWEPE  481 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCC------TTCCHH---HHGGGTC--
T ss_pred             HHHHHHHHHHHHHHHHHheecCC------CCCCHH---HHHHHhCCC
Confidence            55555555444 45566789999      888877   666666543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.65  E-value=3.8e-15  Score=132.18  Aligned_cols=173  Identities=16%  Similarity=0.166  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh--hHHHHHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPMI  129 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--Grr~~~~~~~~~~~  129 (302)
                      ++...+..++..........+.|.+.++ +|.+..+.  +++.+...++.+++.++.|+++||+  |||+.+..+..+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            3344444455555555566777777766 67765554  8899999999999999999999999  99999888877766


Q ss_pred             -HHHHHHhhc--chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHH-HHHHHHHHhhcccccCc
Q 022133          130 -IGASISATT--RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIAG  205 (302)
Q Consensus       130 -i~~~~~~~~--~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~g  205 (302)
                       ++.++..+.  .+.+.+.+..++.|++.+...+....++.|.+|++.|+++.++++....+ |..++|.+.+.+.+..|
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  411 (451)
T 1pw4_A          332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  411 (451)
T ss_dssp             HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             666666665  36667777888899988888888889999999999999999999999999 99999999999998888


Q ss_pred             chHHHHHHhHHHHHHHHHHhhcc
Q 022133          206 WWRICFWVSIVPAAILCLAMVFC  228 (302)
Q Consensus       206 ~w~~~~~~~~~~~~~~~~~~~~~  228 (302)
                       |+..|++.+++.+++.+..++.
T Consensus       412 -~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          412 -WDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHH
Confidence             8899888777777766655544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.54  E-value=2e-14  Score=126.70  Aligned_cols=140  Identities=13%  Similarity=0.005  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcC
Q 022133           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS  170 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~  170 (302)
                      ++..++..++.+++.++.|+++||+|||+++..+.++.+++.+..++.++.+.+++..++.+++.+...+....+++|.+
T Consensus       262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  341 (417)
T 2cfq_A          262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            67777777888899999999999999999999888888887777777777777777777788877766677788999999


Q ss_pred             CCCccchhHhH-HHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHHH-hhccCCC
Q 022133          171 PPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA-MVFCAES  231 (302)
Q Consensus       171 p~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~-~~~~pe~  231 (302)
                      |++.|+++.++ ++....+|.+++|.+++.+.+..| +...|.+.++..+++.+. +++.||+
T Consensus       342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred             CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            99999999998 588889999999999999888777 778888777776666554 4446665

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.53  E-value=5.7e-14  Score=124.18  Aligned_cols=163  Identities=14%  Similarity=0.046  Sum_probs=124.6

Q ss_pred             HHHHhhhhccchhhhhh-hhhc-ccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 022133           61 FLFGYHLGVVNEPLESI-SLDL-GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT  138 (302)
Q Consensus        61 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~  138 (302)
                      ++..........+.|.+ .++. |.+....  ++..+...++.+++.++.|+++||+|||+.+..+.++.+++.++..+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  345 (438)
T 3o7q_A          268 FCYVGAQTACWSYLIRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA  345 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhhhccCCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc
Confidence            33333334455566666 5554 7665554  888999999999999999999999999999999999998888888888


Q ss_pred             chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHH
Q 022133          139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA  218 (302)
Q Consensus       139 ~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~  218 (302)
                      ++...++. .++.|++.+...+....+..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..|.++..|++.+++.
T Consensus       346 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  422 (438)
T 3o7q_A          346 GGHVGLIA-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCF  422 (438)
T ss_dssp             CHHHHHHH-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHH
T ss_pred             CCcHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            77765444 48888999999999999999999977 888888766 5568999999999999887664677777655554


Q ss_pred             HHHHHHhhcc
Q 022133          219 AILCLAMVFC  228 (302)
Q Consensus       219 ~~~~~~~~~~  228 (302)
                      ++.++..++.
T Consensus       423 ~~~~~~~~~~  432 (438)
T 3o7q_A          423 AVIFIFARFR  432 (438)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHHHH
Confidence            4444443433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.52  E-value=9.9e-16  Score=135.13  Aligned_cols=169  Identities=17%  Similarity=0.125  Sum_probs=111.0

Q ss_pred             HHHHHHHhhhhccchhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH---H
Q 022133           58 LSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA---S  133 (302)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~---~  133 (302)
                      ...+..........+++|.+. +++|.+..+.  |++.+++.++..++++++|+++||+|||++++++..+.+++.   .
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~   91 (417)
T 2cfq_A           14 LFFFFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF   91 (417)
T ss_dssp             HHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTS--HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            333344444455566777654 4578887766  899999999999999999999999999999998887765422   1


Q ss_pred             HHhhcchh-HHHHHHHHHHhhhhcchhhhHHHHhhhcCCC--CccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHH
Q 022133          134 ISATTRNL-IGMLLGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (302)
Q Consensus       134 ~~~~~~~~-~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~--~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~  210 (302)
                      ...+.+.. ..+...+.+.|++.+..++.....+.++.+.  +.|+...+....+..+|..++|.+++.+.+. + |+..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~-~~~~  169 (417)
T 2cfq_A           92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N-NQFV  169 (417)
T ss_dssp             HHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C-SHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-c-hhHH
Confidence            11222211 1123445566655554444333444444332  4567777777777888889999998887763 4 8999


Q ss_pred             HHHhHHHHHHHHHHhhccCC
Q 022133          211 FWVSIVPAAILCLAMVFCAE  230 (302)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~pe  230 (302)
                      |++.++..++.++..++.+|
T Consensus       170 f~~~~~~~~~~~~~~~~~~~  189 (417)
T 2cfq_A          170 FWLGSGCALILAVLLFFAKT  189 (417)
T ss_dssp             HTTTTTTTTTHHHHSCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHcCc
Confidence            98876665555555555444

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.48  E-value=4.3e-13  Score=120.44  Aligned_cols=162  Identities=8%  Similarity=-0.029  Sum_probs=114.2

Q ss_pred             hhhccchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH-----HHHHHHHHHHHHHhhc-
Q 022133           66 HLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-----LCALPMIIGASISATT-  138 (302)
Q Consensus        66 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~-----~~~~~~~i~~~~~~~~-  138 (302)
                      ........++.+..+ .+.+..+.  ++..+...++..++.++.++++||+|||+...     .+.++.+++.++.... 
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (491)
T 4aps_A          298 IEEQGSVVLATFAAERVDSSWFPV--SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPG  375 (491)
T ss_dssp             HHGGGGTHHHHHHHHSCCCSSSCS--GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHH
T ss_pred             HHhhccHHHHHHHHHHhccCccCH--HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455555443 45443333  67778888888899999999999999986554     6666666666555442 


Q ss_pred             --------chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcchHHH
Q 022133          139 --------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (302)
Q Consensus       139 --------~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w~~~  210 (302)
                              .+...+++..++.|++.+...+....++.|.+|++.|+++.++++....+|..+++.+.+.+.+..  +...
T Consensus       376 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~--~~~~  453 (491)
T 4aps_A          376 ALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS--EVAY  453 (491)
T ss_dssp             HHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS--TTHH
T ss_pred             HhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHH
Confidence                    256667778889999999988899999999999999999999999999999999999999887654  4455


Q ss_pred             HHHhHHHHHHHHH-HhhccCCC
Q 022133          211 FWVSIVPAAILCL-AMVFCAES  231 (302)
Q Consensus       211 ~~~~~~~~~~~~~-~~~~~pe~  231 (302)
                      |++.+...+++.+ .+++.++.
T Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          454 FSYFGLGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             HHHTHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            6655555554444 44444443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.19  E-value=5.6e-12  Score=109.19  Aligned_cols=155  Identities=15%  Similarity=0.093  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHhhhhccchhhhhhhhh-cccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH-HHHH
Q 022133           54 LVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP-MIIG  131 (302)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~-~~i~  131 (302)
                      ....+..+...........+.|.+.++ +|.+....  +++.+...++..++.++.+++.||+|++.  ..+..+ ...+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~  277 (375)
T 2gfp_A          202 NCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAG  277 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHH--HHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            333444444444444555666766555 67765544  88899999999999999999999999833  233322 2222


Q ss_pred             HH--HHhh--cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhcccccCcch
Q 022133          132 AS--ISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (302)
Q Consensus       132 ~~--~~~~--~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~w  207 (302)
                      ..  ....  .++.+.+++..++.|++.+...+....++.|.+| ++|+++.++.+....+|..++|.+.+.+.+..+ +
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~  355 (375)
T 2gfp_A          278 LLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-G  355 (375)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-H
T ss_pred             HHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c
Confidence            21  1122  2356666777888999999989999999999998 899999999999999999999999888876555 6


Q ss_pred             HHHHHHh
Q 022133          208 RICFWVS  214 (302)
Q Consensus       208 ~~~~~~~  214 (302)
                      ...+++.
T Consensus       356 ~~~~~~~  362 (375)
T 2gfp_A          356 SLGLLMT  362 (375)
T ss_dssp             HHHHHHH
T ss_pred             cHHHHHH
Confidence            6666553

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.03  E-value=1.3e-09  Score=98.46  Aligned_cols=113  Identities=13%  Similarity=0.150  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh----hhhhHH----HHHHHHHHHHHHHHHHHhhc---------chhHHHHHHHHHHhh
Q 022133           91 GLVVSMCLGGAFIGSTLSGWIA----DGVGRR----RAFQLCALPMIIGASISATT---------RNLIGMLLGRFVVGT  153 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~g~l~----d~~Grr----~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~r~~~g~  153 (302)
                      +++.+...++..++.++.+++.    ||.|+|    +.+.++.++.+++.++.++.         .+.+.+++..++.|+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  417 (524)
T 2xut_A          338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF  417 (524)
T ss_dssp             HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence            5555555566666777776654    555432    45667777777777666553         356667778899999


Q ss_pred             hhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccccc
Q 022133          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (302)
Q Consensus       154 ~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~  203 (302)
                      +.+...+....++.|.+|++.||+++|+++....+|..++|.+.+.+.+.
T Consensus       418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~  467 (524)
T 2xut_A          418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP  467 (524)
T ss_dssp             HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	7e-10
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	5e-08

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 57.0 bits (136), Expect = 7e-10
 Identities = 28/216 (12%), Positives = 62/216 (28%), Gaps = 6/216 (2%)

Query: 40  ENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLG 99
              +P+++     + +     +   Y +           ++ GF+   L  G  +S    
Sbjct: 13  AEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDL--GFALSGISI 70

Query: 100 GAFIGSTLSGWIADGVGRRRAFQ----LCALPMIIGASISATTRNLIGMLLGRFVVGTGM 155
                  + G ++D    R        L A  M+    +   T ++  M +  F+ G   
Sbjct: 71  AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQ 130

Query: 156 GLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI 215
           G+G       +        RG   +    A  +G     L+ +        W    ++  
Sbjct: 131 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA 190

Query: 216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKL 251
             A ++ L                   E + ++   
Sbjct: 191 FCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD 226

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 51.3 bits (121), Expect = 5e-08
 Identities = 28/205 (13%), Positives = 60/205 (29%), Gaps = 6/205 (2%)

Query: 51  PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGW 110
            +  +  L  F + + +G    P   I L    + +    G++ +     + +   L G 
Sbjct: 7   TNFWMFGLFFFFYFFIMGAYF-PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGL 65

Query: 111 IADGVGRRRAFQLCALPMIIGASISA----TTRNLIGMLLGRFVVGTGMGLGPTVAALYV 166
           ++D +G R+        M++  +              +L+G  V G  +G      A  V
Sbjct: 66  LSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAV 125

Query: 167 TEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA-GWWRICFWVSIVPAAILCLAM 225
                   R +   F +      +  +L   I           + +  S     +  L  
Sbjct: 126 EAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF 185

Query: 226 VFCAESPHWLYKKGRTAEAEAEFEK 250
               ++P             + F  
Sbjct: 186 FAKTDAPSSATVANAVGANHSAFSL 210

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.9
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.67
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.57
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.52

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=6.7e-24  Score=186.09  Aligned_cols=182  Identities=13%  Similarity=0.072  Sum_probs=151.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 022133           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (302)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~  127 (302)
                      .+|..+..+.++.+..+.+...++...|.+. ++|++.++.  |++.+++.++.+++++++|+++||+|||+++.++.++
T Consensus        22 ~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   98 (447)
T d1pw4a_          22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL   98 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            3455555566666666666666777777665 578888877  8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc----chhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHHHHHHHHHHhhccccc
Q 022133          128 MIIGASISATT----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (302)
Q Consensus       128 ~~i~~~~~~~~----~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~  203 (302)
                      .+++.+++++.    .++..+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++.+++.+...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  178 (447)
T d1pw4a_          99 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  178 (447)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh
Confidence            99998888765    46788999999999999999999999999999999999999999999999999999988887766


Q ss_pred             CcchHHHHHHhHHHHHHH-HHHhhccCCCh
Q 022133          204 AGWWRICFWVSIVPAAIL-CLAMVFCAESP  232 (302)
Q Consensus       204 ~g~w~~~~~~~~~~~~~~-~~~~~~~pe~~  232 (302)
                      .++|++.+++.+++.++. ++.+++.+++|
T Consensus       179 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (447)
T d1pw4a_         179 FNDWHAALYMPAFCAILVALFAFAMMRDTP  208 (447)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             hhcccccchhhhhhHHHHHHHHHHhcccch
Confidence            555999888876665554 44455566654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=3.3e-16  Score=134.20  Aligned_cols=140  Identities=13%  Similarity=0.010  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhcC
Q 022133           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS  170 (302)
Q Consensus        91 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~  170 (302)
                      +...+...++..++..+.+++.||+|+|+.+.++.++.+++.+...+.++.+.+++..++.|++.+...+....++.|.+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  341 (417)
T d1pv7a_         262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            66777788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccchhHhH-HHHHHHHHHHHHHHHhhcccccCcchHHHHHHhHHHHHHHHH-HhhccCCC
Q 022133          171 PPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL-AMVFCAES  231 (302)
Q Consensus       171 p~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~-~~~~~pe~  231 (302)
                      |++.|+++.++ .+....+|..++|.+++.+.+..| ++..|++.+++.++..+ ..+.++++
T Consensus       342 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            99999999998 467788999999999999999888 88888877666665544 44445543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=7.9e-15  Score=125.40  Aligned_cols=177  Identities=14%  Similarity=0.025  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhh-hhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 022133           53 VLVATLSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (302)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~~i~  131 (302)
                      .+...+..+...+..+...+++|.+ .+++|.+..+.  |++.+++.++..++++++|+++||+|||++++++..+..++
T Consensus         9 ~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   86 (417)
T d1pv7a_           9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            4455556666666666677778865 45678876665  99999999999999999999999999999999999888888


Q ss_pred             HHHHhhcchhHH----HHHHHHHHhhhhcchhhhHHHHhhhcCCC--CccchhHhHHHHHHHHHHHHHHHHhhcccccCc
Q 022133          132 ASISATTRNLIG----MLLGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (302)
Q Consensus       132 ~~~~~~~~~~~~----~~~~r~~~g~~~~~~~~~~~~~~~e~~p~--~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  205 (302)
                      ..+.....+...    .++.+.+.+.+.+...........+..++  +.+....+........+..+++.+++.+.+..+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  166 (417)
T d1pv7a_          87 FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINN  166 (417)
T ss_dssp             HHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccc
Confidence            877776654433    33445555555544444443333333322  344556667777888888899999888776553


Q ss_pred             chHHHHHHhHHHHHHHHHHhhccCCCh
Q 022133          206 WWRICFWVSIVPAAILCLAMVFCAESP  232 (302)
Q Consensus       206 ~w~~~~~~~~~~~~~~~~~~~~~pe~~  232 (302)
                       |+..+.......+..++..++.++++
T Consensus       167 -~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (417)
T d1pv7a_         167 -QFVFWLGSGCALILAVLLFFAKTDAP  192 (417)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHSSCCCSC
T ss_pred             -cccccchhhHHHHHHHHHHHHhcccc
Confidence             44444444555555566666677664

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=6.9e-14  Score=121.46  Aligned_cols=169  Identities=16%  Similarity=0.107  Sum_probs=117.8

Q ss_pred             HHHHHHHHHhhhhccchhhhhhh-hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH---HHH
Q 022133           56 ATLSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM---IIG  131 (302)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~~~~~~~~~---~i~  131 (302)
                      .....+...........+.+.+. +..+.+..+.  ++..+...++..++.++.|+++||++|+..........   .++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  331 (447)
T d1pw4a_         254 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA  331 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhhcchhhhhhhcccccccccchh--hhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHH
Confidence            33333333333334444555444 4456655544  78889999999999999999999999765443333322   222


Q ss_pred             HHHHhh--cchhHHHHHHHHHHhhhhcchhhhHHHHhhhcCCCCccchhHhHHHHHHHH-HHHHHHHHhhcccccCcchH
Q 022133          132 ASISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIAGWWR  208 (302)
Q Consensus       132 ~~~~~~--~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~g~w~  208 (302)
                      ......  ..+.....++.++.|++.++..+....+..|.+|++.||++.|+.+....+ |.+++|.+.+.+.+..| |+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~  410 (447)
T d1pw4a_         332 TIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WD  410 (447)
T ss_dssp             HHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hH
Confidence            222222  345666777778889888888888899999999999999999998877666 56778999999998888 78


Q ss_pred             HHHHHhHHHHHHHHHHhhc
Q 022133          209 ICFWVSIVPAAILCLAMVF  227 (302)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~  227 (302)
                      ..|++.+...+++.++..+
T Consensus       411 ~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         411 GGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8887766666655544433