Citrus Sinensis ID: 022170
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 301 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SUC0 | 347 | Probable 3-hydroxyisobuty | yes | no | 0.996 | 0.864 | 0.754 | 1e-136 | |
| Q99L13 | 335 | 3-hydroxyisobutyrate dehy | yes | no | 0.930 | 0.835 | 0.515 | 8e-74 | |
| Q2HJD7 | 336 | 3-hydroxyisobutyrate dehy | yes | no | 0.930 | 0.833 | 0.508 | 5e-73 | |
| P31937 | 336 | 3-hydroxyisobutyrate dehy | yes | no | 0.930 | 0.833 | 0.505 | 1e-72 | |
| Q5R5E7 | 336 | 3-hydroxyisobutyrate dehy | yes | no | 0.930 | 0.833 | 0.505 | 1e-72 | |
| P29266 | 335 | 3-hydroxyisobutyrate dehy | yes | no | 0.930 | 0.835 | 0.501 | 4e-72 | |
| Q54CX6 | 321 | Probable 3-hydroxyisobuty | yes | no | 0.920 | 0.862 | 0.479 | 3e-63 | |
| Q9V8M5 | 324 | Probable 3-hydroxyisobuty | yes | no | 0.916 | 0.851 | 0.422 | 1e-56 | |
| Q9XTI0 | 299 | Probable 3-hydroxyisobuty | yes | no | 0.923 | 0.929 | 0.437 | 2e-56 | |
| P28811 | 298 | 3-hydroxyisobutyrate dehy | yes | no | 0.946 | 0.956 | 0.395 | 1e-51 |
| >sp|Q9SUC0|3HIDH_ARATH Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 485 bits (1248), Expect = e-136, Method: Compositional matrix adjust.
Identities = 227/301 (75%), Positives = 266/301 (88%), Gaps = 1/301 (0%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MGFRM +NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVITMLPSSSH
Sbjct: 48 MGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSH- 106
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V+DVY G NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+D+WE PVMLD
Sbjct: 107 VMDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLD 166
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGVLAAEAGTLTFMVGG EDAY AA+P+ SMG+ +IYCGG+GNG+AAKICNNL M
Sbjct: 167 APVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAM 226
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
AVSMLG SEAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP+SR+Y GG
Sbjct: 227 AVSMLGTSEALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGG 286
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 300
FASKLMAKDLNLA ASA+EVG PL S+AQ+IY K+CE GH++KDFSCVF+H+Y GKDE
Sbjct: 287 FASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDE 346
Query: 301 V 301
V
Sbjct: 347 V 347
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 1 |
| >sp|Q99L13|3HIDH_MOUSE 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 277 bits (708), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 151/293 (51%), Positives = 188/293 (64%), Gaps = 13/293 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NLMK GY + ++DV +V K F + G +P EVAE +D +ITMLPSS +
Sbjct: 49 MGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKADRIITMLPSSMNA 108
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V +VY+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +D
Sbjct: 109 V-EVYSGANGILK--KVKKGSLLIDSSTIDPSVSKELAKEV------EKMGA----VFMD 155
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G +AKICNN+ +
Sbjct: 156 APVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSNVVYCGAVGTGQSAKICNNMLL 215
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+SM+G +EA+ LG G+ L KILN SS RCWSSD+YNPVPGVM GVP+S NY GG
Sbjct: 216 AISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMHGVPSSNNYQGG 275
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 293
F + LMAKDL LA SA L S A IY +C G+ KDFS VFQ+
Sbjct: 276 FGTTLMAKDLGLAQDSATSTKTPILLGSLAHQIYRMMCSKGYSKKDFSSVFQY 328
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q2HJD7|3HIDH_BOVIN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 188/293 (64%), Gaps = 13/293 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 50 MGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINA 109
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+ + Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +D
Sbjct: 110 I-EAYSGANGILK--KVKKGSLLIDSSTIDPMVSKELAKEV------EKMGA----VFMD 156
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV AA +G LTFMVGG E+ + AA+ L MG N +YCG G G AAKICNNL +
Sbjct: 157 APVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLL 216
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GG
Sbjct: 217 AISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGG 276
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 293
F + LMAKDL LA SA L SQA IY +C G+ KDFS VFQ
Sbjct: 277 FGTTLMAKDLGLAQDSATSTKSPILLGSQAHQIYRMMCAKGYSKKDFSSVFQF 329
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P31937|3HIDH_HUMAN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 273 bits (698), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 187/293 (63%), Gaps = 13/293 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 50 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINA 109
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+ + Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +D
Sbjct: 110 I-EAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA----VFMD 156
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAKICNN+ +
Sbjct: 157 APVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLL 216
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GG
Sbjct: 217 AISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGG 276
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 293
F + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 277 FGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQF 329
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q5R5E7|3HIDH_PONAB 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (697), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 187/293 (63%), Gaps = 13/293 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 50 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINA 109
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+ + Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +D
Sbjct: 110 I-EAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA----VFMD 156
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAKICNN+ +
Sbjct: 157 APVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLL 216
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GG
Sbjct: 217 AISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGG 276
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 293
F + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 277 FGATLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQF 329
|
Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P29266|3HIDH_RAT 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3 | Back alignment and function description |
|---|
Score = 271 bits (693), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 190/293 (64%), Gaps = 13/293 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NL+K GY + ++DV +V K F + G +P +VAE +D +ITMLPSS +
Sbjct: 49 MGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKADRIITMLPSSMNS 108
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+ +VY+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +D
Sbjct: 109 I-EVYSGANGILK--KVKKGSLLIDSSTIDPSVSKELAKEV------EKMGA----VFMD 155
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV AA +G LTFMVGG E+ + AA+ L MG N +YCG G+G +AKICNN+ +
Sbjct: 156 APVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSNVLYCGAVGSGQSAKICNNMLL 215
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+SM+G +EA+ LG G+ L KILN SS RCWSSD+YNPVPGVM+GVP+S NY GG
Sbjct: 216 AISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSSNNYQGG 275
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 293
F + LMAKDL LA SA L S A IY +C G+ KDFS VFQ+
Sbjct: 276 FGTTLMAKDLGLAQDSATSTKTPILLGSVAHQIYRMMCSKGYSKKDFSSVFQY 328
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q54CX6|3HIDH_DICDI Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 242 bits (617), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/292 (47%), Positives = 183/292 (62%), Gaps = 15/292 (5%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG A NL+K G+ + V D++ + M + G +P EVA+ +DV++TMLP+S+H
Sbjct: 33 MGGHQAINLIKKGHNLIVFDMSKDNMNRLKEKGAKIANSPAEVAKEADVIVTMLPASAH- 91
Query: 61 VLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 119
V +VY G NG+ Q +VRP LL+DSSTIDP T+R +++ I K+ + + ML
Sbjct: 92 VKNVYCGENGIFQ---TVRPGTLLLDSSTIDPATAREVAS-----IAKKHQST-----ML 138
Query: 120 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 179
D PVSGG AEAGTLTFMVGGSE + AK MGKN ++CG G G AK+CNNL
Sbjct: 139 DCPVSGGTGGAEAGTLTFMVGGSEQDFNTAKTYLECMGKNIVHCGDVGTGQVAKVCNNLV 198
Query: 180 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239
+ +SM+ VSEA+ LG G+ L I N+SSARCW+S+ YNP PGV+E PASR Y G
Sbjct: 199 LGISMIAVSEAMNLGVKQGMDPKKLAGIFNTSSARCWTSELYNPCPGVIETSPASRGYTG 258
Query: 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 291
GF S LM KDL LA+ SAK +G L + A +Y L G KDFS V+
Sbjct: 259 GFGSALMTKDLGLAVDSAKSIGEPLLLGNSAHQLYTLLVAKGDGQKDFSVVY 310
|
Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q9V8M5|3HIDH_DROME Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 169/291 (58%), Gaps = 15/291 (5%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MASNL+KAG+K+ V D++ + G E+A+ SD VITMLP+++
Sbjct: 39 MGANMASNLIKAGHKLHVFDISKPACDGLAAKGATVYAKTSELAKNSDFVITMLPNNA-- 96
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+ + + + + IDSSTI P +++ +KK S + +D
Sbjct: 97 ---IVDASYDEMTADGVNKDTIFIDSSTISPDLVKSL----------QKKISAKGARFID 143
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV AE TLTFMVGG+E Y A K + MGK +CG G G AAK+CNN+ +
Sbjct: 144 APVSGGVPGAEQATLTFMVGGTEAEYNAVKAVLECMGKKITHCGVYGMGQAAKLCNNMML 203
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+SM+GVSEA+ L G+ A+ +I+NSS+ RCW+S+ YNPVPGV PA+R+Y GG
Sbjct: 204 AISMIGVSEAMNLAVRQGLDANVFAEIINSSTGRCWASEIYNPVPGVCPSAPANRDYAGG 263
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 291
F+S L+ KDL LA A PL S A +Y LC+ G +KDFS V+
Sbjct: 264 FSSALITKDLGLASGVANASNSPIPLGSLAHKVYQSLCDKGLGNKDFSVVY 314
|
Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q9XTI0|3HIDH_CAEEL Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=B0250.5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/295 (43%), Positives = 180/295 (61%), Gaps = 17/295 (5%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NL+K G K+ V+DVN V++ F G P ++A AS +IT+LPSS H
Sbjct: 12 MGGHMARNLIKNGKKLIVYDVNKAVVQEFKAEGCEVAAHPADIAAASKEIITVLPSSPH- 70
Query: 61 VLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 119
V VY G G+ + +++P L +DSSTID S ++ A + +LK + +
Sbjct: 71 VKAVYQGEAGIFK---TIQPGTLCMDSSTIDQIVSLEVAQAAA--LLKAE--------YI 117
Query: 120 DAPVSGGVLAAEAGTLTFMVGGSEDA-YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 178
DAP+SGGV A+ TLTFMVG DA ++ A+ + MGKN + G GNG AAKICNN+
Sbjct: 118 DAPISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNM 177
Query: 179 TMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYG 238
+ + M+ V+E + LG S+G+ A L I+N+SS RCWSSD+YNPVPGV+E +P+ R Y
Sbjct: 178 LLGIQMVAVAETMNLGISMGLDAKALAGIVNTSSGRCWSSDTYNPVPGVIENIPSCRGYA 237
Query: 239 GGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN-GHDSKDFSCVFQ 292
GGF + LMAKDL+LA ++ P+ S A IY L + + +KDF V+Q
Sbjct: 238 GGFGTTLMAKDLSLAQNASTNTQAPTPMGSLAHQIYRILARDPQYQAKDFGVVYQ 292
|
Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P28811|MMSB_PSEAE 3-hydroxyisobutyrate dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mmsB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 203 bits (516), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 175/301 (58%), Gaps = 16/301 (5%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA+NL+KAG+++ V D+ + + G ++ + E ++VVI+MLP+ H
Sbjct: 12 MGGPMAANLLKAGHRVNVFDLQPKAVLGLVEQGAQGADSALQCCEGAEVVISMLPAGQH- 70
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V +Y G +GLL LLID STI P+T+R ++ A + L +LD
Sbjct: 71 VESLYLGDDGLL--ARVAGKPLLIDCSTIAPETARKVAEAAAAKGL----------TLLD 118
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV A AGTL+F+VGG + + A+P+ +MG+N + G G G AKICNN+ +
Sbjct: 119 APVSGGVGGARAGTLSFIVGGPAEGFARARPVLENMGRNIFHAGDHGAGQVAKICNNMLL 178
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
+ M G +EAL LG G+ + L++++ SS W+ + YNP PGVM PAS Y GG
Sbjct: 179 GILMAGTAEALALGVKNGLDPAVLSEVMKQSSGGNWALNLYNPWPGVMPQAPASNGYAGG 238
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA--KLCENGHDSKDFSCVFQHYYGGK 298
F +LM KDL LALA+A+ V PL + A+++++ + H+ DFS + Q Y GK
Sbjct: 239 FQVRLMNKDLGLALANAQAVQASTPLGALARNLFSLHAQADAEHEGLDFSSI-QKLYRGK 297
Query: 299 D 299
D
Sbjct: 298 D 298
|
Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 301 | ||||||
| 224061611 | 347 | predicted protein [Populus trichocarpa] | 0.996 | 0.864 | 0.847 | 1e-149 | |
| 255564371 | 388 | 3-hydroxyisobutyrate dehydrogenase, puta | 0.996 | 0.773 | 0.800 | 1e-142 | |
| 225444069 | 345 | PREDICTED: probable 3-hydroxyisobutyrate | 0.993 | 0.866 | 0.786 | 1e-139 | |
| 18415593 | 347 | 3-hydroxyisobutyrate dehydrogenase [Arab | 0.996 | 0.864 | 0.754 | 1e-134 | |
| 21555592 | 347 | 3-hydroxyisobutyrate dehydrogenase-like | 0.996 | 0.864 | 0.754 | 1e-134 | |
| 449435530 | 353 | PREDICTED: probable 3-hydroxyisobutyrate | 0.996 | 0.849 | 0.767 | 1e-132 | |
| 7431189 | 371 | 3-hydroxyisobutyrate dehydrogenase homol | 0.996 | 0.808 | 0.698 | 1e-130 | |
| 297799966 | 372 | hypothetical protein ARALYDRAFT_329506 [ | 0.996 | 0.806 | 0.695 | 1e-129 | |
| 356533083 | 343 | PREDICTED: probable 3-hydroxyisobutyrate | 0.993 | 0.871 | 0.733 | 1e-128 | |
| 356533081 | 350 | PREDICTED: probable 3-hydroxyisobutyrate | 0.993 | 0.854 | 0.733 | 1e-128 |
| >gi|224061611|ref|XP_002300566.1| predicted protein [Populus trichocarpa] gi|222847824|gb|EEE85371.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust.
Identities = 255/301 (84%), Positives = 275/301 (91%), Gaps = 1/301 (0%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG RMA+NL+K GYK+AVHD+NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH
Sbjct: 48 MGSRMANNLIKNGYKVAVHDINCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH- 106
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
VLDVY GPNGLL+ N +RPQLLIDSSTIDPQTSR +S AVSNCILKEKKD WE PVMLD
Sbjct: 107 VLDVYTGPNGLLRCANLMRPQLLIDSSTIDPQTSRKVSVAVSNCILKEKKDHWEKPVMLD 166
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGVLAAEAGTLTFMVGGSEDAY AAKPLFLSMGKN IYCGGAG G+AAKICNNL +
Sbjct: 167 APVSGGVLAAEAGTLTFMVGGSEDAYLAAKPLFLSMGKNAIYCGGAGTGSAAKICNNLAL 226
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
AVSMLGVSEA LGQSLGISA TLTK+LN+SSARCWSSDSYNPVPGVMEGVPASRNY GG
Sbjct: 227 AVSMLGVSEAFVLGQSLGISAGTLTKVLNTSSARCWSSDSYNPVPGVMEGVPASRNYAGG 286
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 300
FASKLMAKDLNLA SAKEVG+ CPLT QAQ+IY +LC++GH+SKDFSC F+HYY G+DE
Sbjct: 287 FASKLMAKDLNLAATSAKEVGLQCPLTYQAQEIYTELCKDGHESKDFSCAFRHYYSGQDE 346
Query: 301 V 301
+
Sbjct: 347 L 347
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564371|ref|XP_002523182.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis] gi|223537589|gb|EEF39213.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust.
Identities = 241/301 (80%), Positives = 270/301 (89%), Gaps = 1/301 (0%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG RMA NL+KAGYK+AVHD+NCNV+KMF+DMGV TKETP EVAEAS++VITMLPS+SH
Sbjct: 89 MGSRMAQNLIKAGYKVAVHDINCNVIKMFTDMGVSTKETPLEVAEASNIVITMLPSTSH- 147
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
VLDVYNGPNGLLQGG +RPQL I+SSTIDP+TSR +SAAVSN ++KEK +WE P+MLD
Sbjct: 148 VLDVYNGPNGLLQGGTFLRPQLFINSSTIDPETSRKLSAAVSNFVVKEKTGNWEKPLMLD 207
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGVLAAEAGTLTFMVGGS+DAY AAKPLFLSMGK+TIYCGGAG G+AAKICNNL M
Sbjct: 208 APVSGGVLAAEAGTLTFMVGGSKDAYLAAKPLFLSMGKSTIYCGGAGTGSAAKICNNLAM 267
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
AVSMLGVSEAL LGQSLGI A TLTK+ NSSSARCWSSDSYNPVPGVMEGVPASRNY GG
Sbjct: 268 AVSMLGVSEALALGQSLGIDADTLTKVFNSSSARCWSSDSYNPVPGVMEGVPASRNYAGG 327
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 300
FASKLM KDLNLA ASAK V CPLT QA +IY ++CENGH+++DFSCVF+HYY GKD+
Sbjct: 328 FASKLMTKDLNLAAASAKAVDFTCPLTQQALEIYTEMCENGHETEDFSCVFRHYYFGKDK 387
Query: 301 V 301
+
Sbjct: 388 L 388
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444069|ref|XP_002264140.1| PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial [Vitis vinifera] gi|297740847|emb|CBI31029.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/300 (78%), Positives = 265/300 (88%), Gaps = 1/300 (0%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG RMA+NL+ AGYK+AVHD+N VM+MF++ GVPTKETPFE+AE SDVVITMLPSSSH
Sbjct: 46 MGSRMANNLIMAGYKVAVHDINHEVMRMFAERGVPTKETPFEIAETSDVVITMLPSSSH- 104
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
VLDVY GPNGL+ GN +RP L IDSSTIDPQTSR +S AVSNC LK++KD WE P++LD
Sbjct: 105 VLDVYTGPNGLIHDGNLLRPMLFIDSSTIDPQTSRRLSVAVSNCGLKQRKDIWETPIILD 164
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGVLAAE GTLTFMVGGSE+AY AAK LFLSMGKNTIYCGGAGNG+AAKICNNL M
Sbjct: 165 APVSGGVLAAETGTLTFMVGGSEEAYLAAKSLFLSMGKNTIYCGGAGNGSAAKICNNLAM 224
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
AVSMLGVSEA LGQSLGI+A TL KI NSSSARCWSSDSYNPVPGVMEGVP+SRNY GG
Sbjct: 225 AVSMLGVSEAFALGQSLGIAAGTLAKIFNSSSARCWSSDSYNPVPGVMEGVPSSRNYVGG 284
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 300
FA+KLMAKDLNLA SAKE G+ CPLTSQA++I+ +LC+ GH++KDFSCVF+HYY GKDE
Sbjct: 285 FATKLMAKDLNLAAESAKETGLTCPLTSQAKEIFVELCKEGHEAKDFSCVFRHYYSGKDE 344
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18415593|ref|NP_567617.1| 3-hydroxyisobutyrate dehydrogenase [Arabidopsis thaliana] gi|30316393|sp|Q9SUC0.3|3HIDH_ARATH RecName: Full=Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial; Short=HIBADH; Flags: Precursor gi|105830240|gb|ABF74718.1| At4g20930 [Arabidopsis thaliana] gi|110737072|dbj|BAF00489.1| 3-hydroxyisobutyrate dehydrogenase -like protein [Arabidopsis thaliana] gi|332658977|gb|AEE84377.1| 3-hydroxyisobutyrate dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 227/301 (75%), Positives = 266/301 (88%), Gaps = 1/301 (0%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MGFRM +NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVITMLPSSSH
Sbjct: 48 MGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSH- 106
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V+DVY G NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+D+WE PVMLD
Sbjct: 107 VMDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLD 166
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGVLAAEAGTLTFMVGG EDAY AA+P+ SMG+ +IYCGG+GNG+AAKICNNL M
Sbjct: 167 APVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAM 226
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
AVSMLG SEAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP+SR+Y GG
Sbjct: 227 AVSMLGTSEALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGG 286
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 300
FASKLMAKDLNLA ASA+EVG PL S+AQ+IY K+CE GH++KDFSCVF+H+Y GKDE
Sbjct: 287 FASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDE 346
Query: 301 V 301
V
Sbjct: 347 V 347
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21555592|gb|AAM63893.1| 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 227/301 (75%), Positives = 266/301 (88%), Gaps = 1/301 (0%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MGFRM +NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVITMLPSSSH
Sbjct: 48 MGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSH- 106
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V+DVY G NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+D+WE PVMLD
Sbjct: 107 VMDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLD 166
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGVLAAEAGTLTFMVGG EDAY AA+P+ SMG+ +IYCGG+GNG+AAKICNNL M
Sbjct: 167 APVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAM 226
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
AVSMLG SEAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP+SR+Y GG
Sbjct: 227 AVSMLGTSEALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGG 286
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 300
FASKLMAKDLNLA ASA+EVG PL S+AQ+IY K+CE GH++KDFSCVF+H+Y GKDE
Sbjct: 287 FASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDE 346
Query: 301 V 301
V
Sbjct: 347 V 347
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435530|ref|XP_004135548.1| PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/301 (76%), Positives = 264/301 (87%), Gaps = 1/301 (0%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG RMA+NL+KAGY M VHD+N N MK +SD+GV TKETPFEVAEASDVVITMLPS SH
Sbjct: 54 MGTRMANNLIKAGYNMVVHDINRNTMKNYSDLGVATKETPFEVAEASDVVITMLPSPSH- 112
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
VLDVYNG +GLL GG +RP LLIDSSTIDPQTSR +SA VS+ ILKEK+ SWE+PVMLD
Sbjct: 113 VLDVYNGSHGLLHGGCHIRPWLLIDSSTIDPQTSRELSAVVSSRILKEKRGSWESPVMLD 172
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGVLAA+A TLTFMVGG E+AY AAK LFLSMGK ++YCGG+GNG+AAKICNNL +
Sbjct: 173 APVSGGVLAADARTLTFMVGGLEEAYHAAKALFLSMGKGSVYCGGSGNGSAAKICNNLAL 232
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
AVSMLGVSEAL LGQSLGISA TLTK+ NSSSARCWSS+SYNPVPGVME VP++R+Y GG
Sbjct: 233 AVSMLGVSEALALGQSLGISAKTLTKVFNSSSARCWSSESYNPVPGVMEEVPSARDYDGG 292
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 300
FA+KLM KDLNLA ASA EVG+ PLTSQAQ+IY KLCE+G+++KDFSCVF+H+Y G DE
Sbjct: 293 FATKLMFKDLNLAKASAGEVGLQHPLTSQAQEIYKKLCEDGYENKDFSCVFRHFYSGDDE 352
Query: 301 V 301
+
Sbjct: 353 L 353
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7431189|pir||T10635 3-hydroxyisobutyrate dehydrogenase homolog T13K14.90 - Arabidopsis thaliana gi|5262783|emb|CAB45888.1| 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] gi|7268890|emb|CAB79093.1| 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/325 (69%), Positives = 266/325 (81%), Gaps = 25/325 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MGFRM +NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVITMLPSSSH
Sbjct: 48 MGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSH- 106
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK---------- 110
V+DVY G NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+
Sbjct: 107 VMDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRASFCSSCEQV 166
Query: 111 --------------DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSM 156
D+WE PVMLDAPVSGGVLAAEAGTLTFMVGG EDAY AA+P+ SM
Sbjct: 167 EIVSFSLVSSIFDVDNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSM 226
Query: 157 GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW 216
G+ +IYCGG+GNG+AAKICNNL MAVSMLG SEAL LGQSLGISASTLT++LN+SS RCW
Sbjct: 227 GRTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGISASTLTEVLNTSSGRCW 286
Query: 217 SSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 276
SSD+YNPVPGVM+GVP+SR+Y GGFASKLMAKDLNLA ASA+EVG PL S+AQ+IY K
Sbjct: 287 SSDAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKK 346
Query: 277 LCENGHDSKDFSCVFQHYYGGKDEV 301
+CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 347 MCEEGHETKDFSCVFRHFYNGKDEV 371
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799966|ref|XP_002867867.1| hypothetical protein ARALYDRAFT_329506 [Arabidopsis lyrata subsp. lyrata] gi|297313703|gb|EFH44126.1| hypothetical protein ARALYDRAFT_329506 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/325 (69%), Positives = 265/325 (81%), Gaps = 25/325 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG RM +NL+KAGYK+ VHD+N +VMKMF++MGV +ETP++VA+ S+VVITMLPSSSH
Sbjct: 49 MGSRMVNNLVKAGYKVTVHDINRDVMKMFTEMGVSARETPYQVAQDSEVVITMLPSSSH- 107
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS-------- 112
V+DVY G NGLL G N++RP LLIDSSTIDPQT+R IS AVSNC LKEK+ S
Sbjct: 108 VMDVYTGTNGLLLGENAIRPALLIDSSTIDPQTTRKISLAVSNCNLKEKRASFCSSCQQV 167
Query: 113 ----------------WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSM 156
WE PVMLDAPVSGGVLAAEAGTLTFMVGG +DAY AA+P+ SM
Sbjct: 168 EIIQFSIVSSIIDAGNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPKDAYVAARPILQSM 227
Query: 157 GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW 216
G+ +IYCGG+GNG+AAKICNNL MAVSMLG SEAL LGQSLGISASTLT++LN+SS RCW
Sbjct: 228 GRTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGISASTLTEVLNTSSGRCW 287
Query: 217 SSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 276
SSD+YNPVPGVM+GVP+SR+Y GGFASKLMAKDLNLA ASA+EVG PL S+AQ+IY K
Sbjct: 288 SSDAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKK 347
Query: 277 LCENGHDSKDFSCVFQHYYGGKDEV 301
+CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 348 MCEEGHETKDFSCVFRHFYNGKDEV 372
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533083|ref|XP_003535098.1| PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/300 (73%), Positives = 257/300 (85%), Gaps = 1/300 (0%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG RMA+NL+KAG+++ VHD+N +V++MFS MGVPTK+TP+EV+EASDVVITMLP+S+H
Sbjct: 41 MGSRMANNLIKAGFRLTVHDLNSDVLEMFSQMGVPTKKTPYEVSEASDVVITMLPTSAH- 99
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V+DVY GPNGLL GG +RP LL+DSSTIDPQTSRN+SA V+N IL+EKK WE P LD
Sbjct: 100 VIDVYTGPNGLLHGGKLLRPWLLLDSSTIDPQTSRNLSATVTNYILREKKGEWEKPFKLD 159
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSG V AAEAGTLTFMVGGSE+A+ AAKPL SMGK+ IYCGGAG+G+AAKICNNL +
Sbjct: 160 APVSGSVTAAEAGTLTFMVGGSEEAFLAAKPLLFSMGKSAIYCGGAGSGSAAKICNNLAL 219
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
AVSMLG+SEAL LGQSLG+SASTLT I N SSARCWSSD+YNPVPG+MEGVP+S +Y GG
Sbjct: 220 AVSMLGISEALALGQSLGVSASTLTNIFNCSSARCWSSDAYNPVPGLMEGVPSSGDYNGG 279
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 300
FASKLMAKDLNLA+ SAK G PLTSQAQ IY +LC GH++KDFSC F+HYY G DE
Sbjct: 280 FASKLMAKDLNLAVESAKLAGCKYPLTSQAQKIYTELCSVGHEAKDFSCAFRHYYSGIDE 339
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533081|ref|XP_003535097.1| PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/300 (73%), Positives = 257/300 (85%), Gaps = 1/300 (0%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG RMA+NL+KAG+++ VHD+N +V++MFS MGVPTK+TP+EV+EASDVVITMLP+S+H
Sbjct: 48 MGSRMANNLIKAGFRLTVHDLNSDVLEMFSQMGVPTKKTPYEVSEASDVVITMLPTSAH- 106
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V+DVY GPNGLL GG +RP LL+DSSTIDPQTSRN+SA V+N IL+EKK WE P LD
Sbjct: 107 VIDVYTGPNGLLHGGKLLRPWLLLDSSTIDPQTSRNLSATVTNYILREKKGEWEKPFKLD 166
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSG V AAEAGTLTFMVGGSE+A+ AAKPL SMGK+ IYCGGAG+G+AAKICNNL +
Sbjct: 167 APVSGSVTAAEAGTLTFMVGGSEEAFLAAKPLLFSMGKSAIYCGGAGSGSAAKICNNLAL 226
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
AVSMLG+SEAL LGQSLG+SASTLT I N SSARCWSSD+YNPVPG+MEGVP+S +Y GG
Sbjct: 227 AVSMLGISEALALGQSLGVSASTLTNIFNCSSARCWSSDAYNPVPGLMEGVPSSGDYNGG 286
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 300
FASKLMAKDLNLA+ SAK G PLTSQAQ IY +LC GH++KDFSC F+HYY G DE
Sbjct: 287 FASKLMAKDLNLAVESAKLAGCKYPLTSQAQKIYTELCSVGHEAKDFSCAFRHYYSGIDE 346
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 301 | ||||||
| TAIR|locus:2133134 | 347 | AT4G20930 [Arabidopsis thalian | 0.996 | 0.864 | 0.754 | 1.2e-122 | |
| UNIPROTKB|Q5ZLI9 | 333 | HIBADH "Uncharacterized protei | 0.926 | 0.837 | 0.523 | 4.1e-72 | |
| MGI|MGI:1889802 | 335 | Hibadh "3-hydroxyisobutyrate d | 0.930 | 0.835 | 0.515 | 1.8e-69 | |
| UNIPROTKB|F1PYB6 | 336 | HIBADH "Uncharacterized protei | 0.926 | 0.830 | 0.510 | 3.8e-69 | |
| UNIPROTKB|Q2HJD7 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.926 | 0.830 | 0.510 | 8e-69 | |
| UNIPROTKB|P31937 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.926 | 0.830 | 0.506 | 2.1e-68 | |
| UNIPROTKB|Q5R5E7 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.926 | 0.830 | 0.506 | 2.1e-68 | |
| RGD|708399 | 335 | Hibadh "3-hydroxyisobutyrate d | 0.930 | 0.835 | 0.501 | 2.7e-68 | |
| ZFIN|ZDB-GENE-040426-1582 | 329 | hibadhb "3-hydroxyisobutyrate | 0.926 | 0.848 | 0.496 | 2.8e-66 | |
| ZFIN|ZDB-GENE-040801-264 | 328 | hibadha "3-hydroxyisobutyrate | 0.926 | 0.850 | 0.493 | 4.5e-66 |
| TAIR|locus:2133134 AT4G20930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1206 (429.6 bits), Expect = 1.2e-122, P = 1.2e-122
Identities = 227/301 (75%), Positives = 266/301 (88%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MGFRM +NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVITMLPSSSH
Sbjct: 48 MGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSH- 106
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V+DVY G NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+D+WE PVMLD
Sbjct: 107 VMDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLD 166
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGVLAAEAGTLTFMVGG EDAY AA+P+ SMG+ +IYCGG+GNG+AAKICNNL M
Sbjct: 167 APVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAM 226
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
AVSMLG SEAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP+SR+Y GG
Sbjct: 227 AVSMLGTSEALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGG 286
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 300
FASKLMAKDLNLA ASA+EVG PL S+AQ+IY K+CE GH++KDFSCVF+H+Y GKDE
Sbjct: 287 FASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDE 346
Query: 301 V 301
V
Sbjct: 347 V 347
|
|
| UNIPROTKB|Q5ZLI9 HIBADH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 153/292 (52%), Positives = 189/292 (64%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NL+K GY + +DV K F D+G ++P +VAE +D +ITMLPSS +
Sbjct: 47 MGNPMAKNLIKHGYPVIAYDVFPEACKEFQDLGAQVTDSPADVAERADRIITMLPSSPNA 106
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+ +VY G NG+L+ + LLIDSSTIDP S+ ++ AV EK + V +D
Sbjct: 107 I-EVYTGANGILK--KVKKGSLLIDSSTIDPSVSKELAKAV------EKMGA----VFMD 153
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV AA AG LTFMVGG E + AAK L + MG N +YCG G G AAKICNN+ +
Sbjct: 154 APVSGGVGAARAGNLTFMVGGMEQEFDAAKELLICMGSNVVYCGEVGTGQAAKICNNMLL 213
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+SM+G +E + LG LG+ L KILN SS RCWSSD+YNPVPGVMEGVP++ NY GG
Sbjct: 214 AISMIGTAETMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMEGVPSANNYQGG 273
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 292
F + LMAKDL LA SA PL SQA IY +C G+ KDFS VFQ
Sbjct: 274 FGTTLMAKDLGLAQISATNTKTPVPLGSQAHQIYRMMCAKGYALKDFSAVFQ 325
|
|
| MGI|MGI:1889802 Hibadh "3-hydroxyisobutyrate dehydrogenase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
Identities = 151/293 (51%), Positives = 188/293 (64%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NLMK GY + ++DV +V K F + G +P EVAE +D +ITMLPSS +
Sbjct: 49 MGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKADRIITMLPSSMNA 108
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V +VY+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +D
Sbjct: 109 V-EVYSGANGILK--KVKKGSLLIDSSTIDPSVSKELAKEV------EKMGA----VFMD 155
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G +AKICNN+ +
Sbjct: 156 APVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSNVVYCGAVGTGQSAKICNNMLL 215
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+SM+G +EA+ LG G+ L KILN SS RCWSSD+YNPVPGVM GVP+S NY GG
Sbjct: 216 AISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMHGVPSSNNYQGG 275
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 293
F + LMAKDL LA SA L S A IY +C G+ KDFS VFQ+
Sbjct: 276 FGTTLMAKDLGLAQDSATSTKTPILLGSLAHQIYRMMCSKGYSKKDFSSVFQY 328
|
|
| UNIPROTKB|F1PYB6 HIBADH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
Identities = 149/292 (51%), Positives = 188/292 (64%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 50 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINA 109
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+ + Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +D
Sbjct: 110 I-EAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA----VFMD 156
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAKICNN+ +
Sbjct: 157 APVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLL 216
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GG
Sbjct: 217 AISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGG 276
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 292
F + LMAKDL LA SA L SQA IY +C G+ KDFS VFQ
Sbjct: 277 FGATLMAKDLGLAQDSATSTKSPILLGSQAHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| UNIPROTKB|Q2HJD7 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 149/292 (51%), Positives = 188/292 (64%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 50 MGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINA 109
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+ + Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +D
Sbjct: 110 I-EAYSGANGILK--KVKKGSLLIDSSTIDPMVSKELAKEV------EKMGA----VFMD 156
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV AA +G LTFMVGG E+ + AA+ L MG N +YCG G G AAKICNNL +
Sbjct: 157 APVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLL 216
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GG
Sbjct: 217 AISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGG 276
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 292
F + LMAKDL LA SA L SQA IY +C G+ KDFS VFQ
Sbjct: 277 FGTTLMAKDLGLAQDSATSTKSPILLGSQAHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| UNIPROTKB|P31937 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 148/292 (50%), Positives = 187/292 (64%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 50 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINA 109
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+ + Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +D
Sbjct: 110 I-EAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA----VFMD 156
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAKICNN+ +
Sbjct: 157 APVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLL 216
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GG
Sbjct: 217 AISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGG 276
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 292
F + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 277 FGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| UNIPROTKB|Q5R5E7 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 148/292 (50%), Positives = 187/292 (64%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 50 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINA 109
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+ + Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +D
Sbjct: 110 I-EAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA----VFMD 156
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAKICNN+ +
Sbjct: 157 APVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLL 216
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GG
Sbjct: 217 AISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGG 276
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 292
F + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 277 FGATLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| RGD|708399 Hibadh "3-hydroxyisobutyrate dehydrogenase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 147/293 (50%), Positives = 190/293 (64%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NL+K GY + ++DV +V K F + G +P +VAE +D +ITMLPSS +
Sbjct: 49 MGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKADRIITMLPSSMNS 108
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+ +VY+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +D
Sbjct: 109 I-EVYSGANGILK--KVKKGSLLIDSSTIDPSVSKELAKEV------EKMGA----VFMD 155
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV AA +G LTFMVGG E+ + AA+ L MG N +YCG G+G +AKICNN+ +
Sbjct: 156 APVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSNVLYCGAVGSGQSAKICNNMLL 215
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+SM+G +EA+ LG G+ L KILN SS RCWSSD+YNPVPGVM+GVP+S NY GG
Sbjct: 216 AISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSSNNYQGG 275
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 293
F + LMAKDL LA SA L S A IY +C G+ KDFS VFQ+
Sbjct: 276 FGTTLMAKDLGLAQDSATSTKTPILLGSVAHQIYRMMCSKGYSKKDFSSVFQY 328
|
|
| ZFIN|ZDB-GENE-040426-1582 hibadhb "3-hydroxyisobutyrate dehydrogenase b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 145/292 (49%), Positives = 184/292 (63%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NL+K GY + DV K ++G ++P +VA+ +D +ITMLPS+ +
Sbjct: 43 MGNPMAKNLIKHGYPVIATDVFPESCKELQELGAQILDSPADVADKADRIITMLPSNPN- 101
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V+DVY GPNG+L+ + LLIDSSTIDP S+ ++ A EK + V +
Sbjct: 102 VVDVYTGPNGILK--KVKKGSLLIDSSTIDPAVSKEMAVAA------EKLGA----VFMG 149
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV AA +G LTFMVGG E+ + AAK L MG N +YCG G G AAKICNN+ +
Sbjct: 150 APVSGGVGAATSGKLTFMVGGPEEEFNAAKELLSCMGANVVYCGQVGTGQAAKICNNMLL 209
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+ M+G +E + LG LG+ L KILN SS RCWSSD+YNPVPGVMEGVP++ NY GG
Sbjct: 210 AIGMIGTAETMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMEGVPSANNYQGG 269
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 292
F + LM KDL LA SA L S A IY +C G+ +KDFS VFQ
Sbjct: 270 FGTTLMTKDLGLAQNSATNTKTPVLLGSVAHQIYRMMCGRGYANKDFSSVFQ 321
|
|
| ZFIN|ZDB-GENE-040801-264 hibadha "3-hydroxyisobutyrate dehydrogenase a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 144/292 (49%), Positives = 181/292 (61%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NL+K GY + D K D G ++P EVAE +D +ITMLPSS +
Sbjct: 43 MGTPMARNLLKNGYPVIATDAFPESCKELQDSGAQILDSPAEVAEKADRIITMLPSSPN- 101
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V++VY G N +L+ + LLIDSSTIDP S+ ++ A EK + V +D
Sbjct: 102 VIEVYTGSNSILR--KVKKGTLLIDSSTIDPAVSKEMAVAA------EKMGA----VFMD 149
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV AA LTF+VGG E+ Y AA+ L MG N +YCG G+G AAKICNN+ +
Sbjct: 150 APVSGGVGAASLAKLTFLVGGVEEEYNAAQELLTCMGANVVYCGQVGSGQAAKICNNMLL 209
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+ MLG +E + LG LG+ L KILN SS RCWSSD+YNPVPGVMEGVP++ NY GG
Sbjct: 210 AIGMLGTAETMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMEGVPSANNYQGG 269
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 292
F + LMAKDL A +A PL S A +Y +C G+ +KDFS VFQ
Sbjct: 270 FITTLMAKDLGFAQNTATSTRTPIPLGSLAHQVYRTMCARGYSNKDFSSVFQ 321
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0ABQ3 | GARR_ECOL6 | 1, ., 1, ., 1, ., 6, 0 | 0.3525 | 0.9069 | 0.9285 | yes | no |
| P28811 | MMSB_PSEAE | 1, ., 1, ., 1, ., 3, 1 | 0.3953 | 0.9468 | 0.9563 | yes | no |
| Q9V8M5 | 3HIDH_DROME | 1, ., 1, ., 1, ., 3, 1 | 0.4226 | 0.9169 | 0.8518 | yes | no |
| Q5R5E7 | 3HIDH_PONAB | 1, ., 1, ., 1, ., 3, 1 | 0.5051 | 0.9302 | 0.8333 | yes | no |
| P63935 | MMSB_MYCTU | 1, ., 1, ., 1, ., 3, 1 | 0.3853 | 0.9302 | 0.9523 | yes | no |
| P63936 | MMSB_MYCBO | 1, ., 1, ., 1, ., 3, 1 | 0.3853 | 0.9302 | 0.9523 | yes | no |
| Q9SUC0 | 3HIDH_ARATH | 1, ., 1, ., 1, ., 3, 1 | 0.7541 | 0.9966 | 0.8645 | yes | no |
| Q54CX6 | 3HIDH_DICDI | 1, ., 1, ., 1, ., 3, 1 | 0.4794 | 0.9202 | 0.8629 | yes | no |
| P29266 | 3HIDH_RAT | 1, ., 1, ., 1, ., 3, 1 | 0.5017 | 0.9302 | 0.8358 | yes | no |
| Q9XTI0 | 3HIDH_CAEEL | 1, ., 1, ., 1, ., 3, 1 | 0.4372 | 0.9235 | 0.9297 | yes | no |
| P31937 | 3HIDH_HUMAN | 1, ., 1, ., 1, ., 3, 1 | 0.5051 | 0.9302 | 0.8333 | yes | no |
| O34948 | YKWC_BACSU | 1, ., 1, ., -, ., - | 0.3197 | 0.9102 | 0.9513 | yes | no |
| Q99L13 | 3HIDH_MOUSE | 1, ., 1, ., 1, ., 3, 1 | 0.5153 | 0.9302 | 0.8358 | yes | no |
| Q2HJD7 | 3HIDH_BOVIN | 1, ., 1, ., 1, ., 3, 1 | 0.5085 | 0.9302 | 0.8333 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 301 | |||
| TIGR01692 | 288 | TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen | 1e-105 | |
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 1e-84 | |
| PRK11559 | 296 | PRK11559, garR, tartronate semialdehyde reductase; | 4e-54 | |
| TIGR01505 | 291 | TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona | 7e-51 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 1e-46 | |
| PRK15059 | 292 | PRK15059, PRK15059, tartronate semialdehyde reduct | 6e-36 | |
| PRK15461 | 296 | PRK15461, PRK15461, NADH-dependent gamma-hydroxybu | 1e-33 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 2e-26 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 2e-21 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 2e-09 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 2e-09 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 3e-08 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 1e-07 |
| >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 307 bits (789), Expect = e-105
Identities = 134/294 (45%), Positives = 180/294 (61%), Gaps = 13/294 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA+NL+KAG+ + V D+ + ++ G +P E AE +D VITMLP+ H
Sbjct: 7 MGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQH- 65
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V+ VY+G G+L + LLID STIDP ++R ++ + V +D
Sbjct: 66 VISVYSGDEGILP--KVAKGSLLIDCSTIDPDSARKLAELAAA----------HGAVFMD 113
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV A AGTLTFMVGG + + AA+P+ MG+N ++CG G G AAKICNN+ +
Sbjct: 114 APVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLL 173
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
+SM+G +EA+ LG+ LG+ L +I N+SS RCWSSD+YNPVPGVM PAS Y GG
Sbjct: 174 GISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGG 233
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
F + LM KDL LA +AK G PL + A+ +Y+ + GH KDFS V Q
Sbjct: 234 FGTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287
|
3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288 |
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 255 bits (654), Expect = 1e-84
Identities = 114/295 (38%), Positives = 166/295 (56%), Gaps = 21/295 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKETPFEVAEASDVVITMLPSSSH 59
MG MA+NL+KAG+++ V++ + G +P E A +DVVITMLP +
Sbjct: 11 MGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAA 70
Query: 60 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 119
V V G NGLL+G ++ID STI P+T+R ++AA L K L
Sbjct: 71 -VRAVLFGENGLLEG--LKPGAIVIDMSTISPETARELAAA-----LAAKGLE-----FL 117
Query: 120 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 179
DAPVSGGV A AGTLT MVGG +A++ AKP+ +MGKN ++ G G G AAK+ NN+
Sbjct: 118 DAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNIL 177
Query: 180 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239
+A ++ ++EAL L + G+ + ++++ +A W ++Y P M ++
Sbjct: 178 LAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGP---RM----LEGDFSP 230
Query: 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
GFA LM KDL LAL +AKE+G PLT+ A ++YAK G +DFS + +
Sbjct: 231 GFAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLL 285
|
Length = 286 |
| >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 4e-54
Identities = 103/295 (34%), Positives = 150/295 (50%), Gaps = 22/295 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG M+ NL+KAGY + V+D N + G T T VAE DV+ITMLP+S H
Sbjct: 13 MGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPH- 71
Query: 61 VLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 119
V +V G NG+++G +P ++ID S+I P SR I+AA LK K ML
Sbjct: 72 VKEVALGENGIIEG---AKPGTVVIDMSSIAPLASREIAAA-----LKAK-----GIEML 118
Query: 120 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 179
DAPVSGG A GTL+ MVGG + + L +M + ++ G G G K+ N +
Sbjct: 119 DAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVI 178
Query: 180 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239
+A+++ +SEAL L G++ + + + A D+ P VM+ RN+
Sbjct: 179 VALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDA--KAPMVMD-----RNFKP 231
Query: 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
GF L KDL AL ++ VG PLT+ ++ L +G + D S + +Y
Sbjct: 232 GFRIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYY 286
|
Length = 296 |
| >gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 7e-51
Identities = 104/294 (35%), Positives = 149/294 (50%), Gaps = 20/294 (6%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG M+ NL KAGY++ V + V G T ET +V E +DV+ TM+P S Q
Sbjct: 10 MGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSP-Q 68
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V +V G NG+++ + + L+D S+I P S+ + AV KEK LD
Sbjct: 69 VEEVAFGENGIIE--GAKPGKTLVDMSSISPIESKRFAKAV-----KEKGID-----YLD 116
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGG + A GTL+ MVGG + + KPLF ++GKN + GG G+G K+ N + +
Sbjct: 117 APVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIV 176
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+++ VSEAL G+ + + L A + V++ R + G
Sbjct: 177 ALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGER--VID-----RTFKPG 229
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
F L KDLNLAL SAK VG + P T+ Q+++ L NG D S + Q
Sbjct: 230 FRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQAL 283
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291 |
| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 1e-46
Identities = 64/166 (38%), Positives = 90/166 (54%), Gaps = 15/166 (9%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NL+KAGY + V++ ++ G +P E ++DVVITM+P+ +
Sbjct: 11 MGSPMALNLLKAGYTVTVYNRTPEKVEELVAEGAVGAASPAEFVASADVVITMVPAGAA- 69
Query: 61 VLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 119
V V G +GLL G ++P ++ID ST DP +R + L EK L
Sbjct: 70 VDAVILGEDGLLPG---LKPGDIIIDGSTSDPDDTRRRAKE-----LAEK-----GIHFL 116
Query: 120 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG 165
DAPVSGG AEAGTL+ MVGG E+A++ KP+ +MG + G
Sbjct: 117 DAPVSGGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGACVTHYIG 162
|
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 |
| >gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 6e-36
Identities = 95/292 (32%), Positives = 146/292 (50%), Gaps = 21/292 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NL +AG+++ V + ++ S +G + ET +V EASD++ M+P + Q
Sbjct: 11 MGTPMAINLARAGHQLHVTTIGPVADELLS-LGAVSVETARQVTEASDIIFIMVPDTP-Q 68
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V +V G NG + S++ + ++D S+I P ++ + V+ LD
Sbjct: 69 VEEVLFGENGCTKA--SLKGKTIVDMSSISPIETKRFARQVNEL----------GGDYLD 116
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGG + A GTL+ MVGG E ++ KPLF +GKN GG G+G K+ N + +
Sbjct: 117 APVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIV 176
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+++ VSEAL G + + L ++S V G R + G
Sbjct: 177 ALNIEAVSEALLFASKAGADPVRVRQALMGG----FASSRILEVHGERM---IKRTFNPG 229
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 292
F L KDLNLAL SAK + ++ P T+ Q+++ NG D S + Q
Sbjct: 230 FKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQ 281
|
Length = 292 |
| >gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 1e-33
Identities = 90/294 (30%), Positives = 148/294 (50%), Gaps = 21/294 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MASNL+K G+++ V DVN + D G +P + A ++ VITMLP+
Sbjct: 12 MGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDL- 70
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V V G NG+ +G + R L+ID STI P + + A ++ K S M+D
Sbjct: 71 VRSVLFGENGVCEGLS--RDALVIDMSTIHPLQTDKLIAD-----MQAKGFS-----MMD 118
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
PV A GTL + GG+ + + A P+ ++MG I GG G G K+ NN M
Sbjct: 119 VPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINAGGPGMGIRVKLINNY-M 177
Query: 181 AVSMLGVS-EALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239
++++ +S EA L ++LG+S K+++ ++A + P V++G +
Sbjct: 178 SIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWP-NKVLKG-----DLSP 231
Query: 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 293
F L KDL +AL A ++ V PL + ++++Y++ G +D+S + +
Sbjct: 232 AFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQ 285
|
Length = 296 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 76/279 (27%), Positives = 133/279 (47%), Gaps = 27/279 (9%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MGF MAS+L+K+ + + +DV + F + G +P EVA+ DV++ M+ + Q
Sbjct: 335 MGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEV-Q 393
Query: 61 VLDVYNGPNG---LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK-KDSWENP 116
+V G G L G S+ + SST+ P V L+ + ++ +
Sbjct: 394 AENVLFGDLGAVSALPAGASI-----VLSSTVSP-------GFVIQ--LERRLENEGRDI 439
Query: 117 VMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKIC 175
++DAPVSGGV A GTLT M G+++A ++A + ++ K + GG G G+ K+
Sbjct: 440 KLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMV 499
Query: 176 NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASR 235
N L V + +EA+ G LG++ L I++++ W + N VP +++
Sbjct: 500 NQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFE--NRVPHMLDN----- 552
Query: 236 NYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 274
+Y A + KDL + + L++ A ++
Sbjct: 553 DYTPYSALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLF 591
|
Length = 1378 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 2e-21
Identities = 71/289 (24%), Positives = 135/289 (46%), Gaps = 25/289 (8%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
+ F +AS+L+++G+K+ +++ +M+ F ++G ++P E A+ + ++ +L S Q
Sbjct: 15 LSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVL-SHPDQ 73
Query: 61 VLDVYNGPNGLLQG--GNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM 118
V DV+ G G +G +V ++ STI P + + K+ + E +
Sbjct: 74 VDDVFFGDEGAAKGLQKGAV----ILIRSTILPLQLQKLE--------KKLTERKEQIFL 121
Query: 119 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT-IYCGGAGNGAAAKICNN 177
+DA VS G+ G L + G DA A+P +M + + G G G+ K+ N
Sbjct: 122 VDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNE 181
Query: 178 LTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNY 237
L + ++ +EA+ LG GI + I+++++ W N VP +++ +Y
Sbjct: 182 LLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWI--FKNHVPLLLKD-----DY 234
Query: 238 GGGFASKLMAKDLNLALASAKEVGVDCPLTSQA--QDIYAKLCENGHDS 284
G ++ ++L + L AK + PL + A Q I G D+
Sbjct: 235 IEGRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDT 283
|
Length = 1378 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 2e-09
Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 54/195 (27%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASD---VVITMLPSS 57
MG MA L++ G+++ +D N ++ ++ G ++ E+ VV M+P+
Sbjct: 11 MGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAG 70
Query: 58 S--HQVLDVYNGPNGLLQ-------GGNS------VRPQLLIDSSTIDPQTSRNISAAVS 102
+D LL GGNS R +LL + I
Sbjct: 71 EITDATID---ELAPLLSPGDIVIDGGNSYYKDDIRRAELL---------AEKGIH---- 114
Query: 103 NCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF--LSMGKNT 160
+D SGGV E G M+GG ++A + +P+F L+
Sbjct: 115 ---------------FVDVGTSGGVWGLERG-YCLMIGGDKEAVERLEPIFKALAPRAED 158
Query: 161 --IYCGGAGNGAAAK 173
++ G G G K
Sbjct: 159 GYLHAGPVGAGHFVK 173
|
Length = 301 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-09
Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 29/186 (15%)
Query: 1 MGFRMASNLMKAGYKMAVHDVN---CNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS- 56
MG MA L + G+++ +DVN +V + E EA + M+P+
Sbjct: 11 MGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAG 70
Query: 57 --SSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWE 114
+ + D+Y LL G+ V +D SR L E+ +
Sbjct: 71 EVTESVIKDLYP----LLSPGDIV----------VDGGNSRYKDDLRRAEELAERGIHY- 115
Query: 115 NPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSM---GKNTIYCGGAGNGAA 171
+D SGGV G MVGG ++ Y +P+F ++ G ++ G G+G
Sbjct: 116 ----VDCGTSGGVWGLRNG-YCLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHF 170
Query: 172 AKICNN 177
K+ +N
Sbjct: 171 LKMVHN 176
|
Length = 299 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-08
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 27/185 (14%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE---ASDVVITMLPSS 57
MG + L+ G+ + +DVN ++ D G + E+ A +V M+P+
Sbjct: 11 MGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAG 70
Query: 58 S--HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 115
V+D LL G+ V ID S + +L EK +
Sbjct: 71 DITDAVIDDLAP---LLSAGDIV----------IDGGNSNYKDSLRRAKLLAEKGIHF-- 115
Query: 116 PVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF--LSMGKNT-IYCGGAGNGAAA 172
LD SGGV AE G M+GG E+A + +P+F L+ G++ +YCG +G+G
Sbjct: 116 ---LDVGTSGGVWGAERG-YCLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFV 171
Query: 173 KICNN 177
K+ +N
Sbjct: 172 KMVHN 176
|
Length = 300 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 1e-07
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 118 MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG---KNTIYCGGAGNGAAAKI 174
+LD SGGV E G FM+GG +A+ A+PLF + + +YCG G+G K+
Sbjct: 114 LLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKM 172
Query: 175 CNN 177
+N
Sbjct: 173 VHN 175
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 301 | |||
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 100.0 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 100.0 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 100.0 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 100.0 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 100.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 100.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 100.0 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 100.0 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 100.0 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 100.0 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.97 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.96 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.96 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.96 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.96 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.95 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.95 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.95 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.95 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.92 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.91 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.9 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 99.9 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.88 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.87 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.87 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.86 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.86 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.83 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.82 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.79 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.79 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.79 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.77 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.77 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.77 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.75 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.75 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.74 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.72 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.71 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.71 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.68 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.67 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.67 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.65 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.63 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.61 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.58 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.58 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.56 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.52 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.47 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.45 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.39 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.38 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.38 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.37 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.36 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.34 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 99.3 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.3 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.29 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.26 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.26 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.25 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.24 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.19 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.17 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.16 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.16 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.16 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.13 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.12 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.11 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.09 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.07 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.06 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.06 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.06 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.01 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.01 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 98.99 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 98.99 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 98.98 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 98.92 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 98.91 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 98.87 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 98.84 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.84 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 98.72 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.69 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 98.64 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.61 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.52 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.49 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.41 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.39 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.37 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.34 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.27 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.27 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.26 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.24 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.19 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.18 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.18 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.02 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 97.96 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 97.94 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 97.94 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.93 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.93 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.91 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.83 | |
| PF07479 | 149 | NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate | 97.8 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 97.75 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 97.71 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.68 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 97.61 | |
| PLN02928 | 347 | oxidoreductase family protein | 97.57 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 97.56 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.54 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 97.52 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 97.48 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 97.35 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 97.3 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.29 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.25 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 97.24 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 97.06 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.97 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 96.95 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 96.94 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 96.86 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 96.8 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 96.79 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 96.77 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.65 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 96.63 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 96.61 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 96.59 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.58 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 96.57 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 96.56 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.54 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 96.52 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 96.51 | |
| PLN02494 | 477 | adenosylhomocysteinase | 96.46 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 96.44 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 96.41 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 96.4 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 96.34 | |
| PF10728 | 132 | DUF2520: Domain of unknown function (DUF2520); Int | 96.3 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 96.25 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.24 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.15 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 96.13 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.11 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 96.09 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 96.09 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.06 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 96.05 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 95.99 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 95.98 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 95.87 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 95.86 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.85 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 95.82 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 95.77 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.75 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.69 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 95.65 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 95.61 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 95.6 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 95.59 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.55 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 95.53 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.5 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.48 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 95.44 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.32 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.25 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 95.25 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 95.25 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 95.19 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 95.18 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 95.15 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 95.03 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 95.03 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 95.03 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 94.98 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.95 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 94.89 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 94.82 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 94.75 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 94.72 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 94.71 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.7 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 94.68 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 94.59 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 94.56 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.56 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.55 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.54 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.5 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 94.46 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 94.43 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.4 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 94.38 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.37 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 94.33 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.32 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 94.29 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.21 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 94.08 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.06 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.04 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 94.03 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.99 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.97 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.88 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 93.78 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 93.77 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.75 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.75 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.67 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 93.67 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 93.54 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 93.5 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.5 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 93.48 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 93.34 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 93.3 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 93.21 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 93.17 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 93.15 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 93.12 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.1 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 92.83 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 92.75 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.68 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 92.65 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 92.48 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 92.27 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.21 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.21 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.01 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 92.0 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 91.81 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 91.63 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 91.6 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 91.56 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 91.5 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 91.49 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 91.25 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 91.22 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 91.08 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 90.84 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 90.82 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.81 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.67 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 90.57 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 90.49 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 90.22 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 89.95 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 89.64 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 89.55 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 89.54 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 89.53 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 89.37 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 88.94 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 88.68 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 88.62 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 88.6 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 88.5 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 88.43 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 88.36 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 88.35 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 88.13 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 87.75 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 87.64 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 87.58 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 87.26 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 87.26 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 87.22 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 86.96 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 86.77 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 86.69 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 86.61 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 86.33 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 86.27 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 86.09 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 86.08 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 85.98 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 85.92 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 85.86 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 85.73 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 85.69 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 85.55 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 85.28 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 85.07 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 85.05 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 84.94 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 84.66 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 84.57 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 84.49 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 84.46 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 84.33 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 84.32 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 84.07 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 84.02 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 83.87 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 83.7 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 83.67 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 83.61 | |
| PF08546 | 125 | ApbA_C: Ketopantoate reductase PanE/ApbA C termina | 83.55 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 83.41 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 83.35 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 83.28 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 83.27 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 82.96 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 82.86 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 82.73 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 82.67 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 82.67 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 82.34 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 82.33 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 82.22 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 82.09 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 82.0 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 81.98 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 81.93 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 81.9 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 81.73 | |
| TIGR01081 | 448 | mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl | 81.61 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 81.52 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 81.4 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 81.38 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 81.32 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 80.88 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 80.58 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 80.57 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 80.32 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 80.31 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 80.29 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 80.25 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 80.14 |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-60 Score=408.57 Aligned_cols=275 Identities=40% Similarity=0.640 Sum_probs=261.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||.+||.||.++||+|++|||++++ .+.+.+.|+..+.++.|+++.+|+||+|||++.+ +++|+++.++++++ ..+
T Consensus 11 MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~-V~~V~~g~~g~~~~--~~~ 87 (286)
T COG2084 11 MGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAA-VRAVLFGENGLLEG--LKP 87 (286)
T ss_pred hhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHH-HHHHHhCccchhhc--CCC
Confidence 9999999999999999999999999 6666777999999999999999999999999998 99999998899876 467
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCC
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN 159 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~ 159 (301)
|+++|||||++|.+++++++.+.+. +..|+|+||+|++..+..|++++|+||+++.|++++|+|+.++++
T Consensus 88 G~i~IDmSTisp~~a~~~a~~~~~~----------G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~ 157 (286)
T COG2084 88 GAIVIDMSTISPETARELAAALAAK----------GLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKN 157 (286)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHhc----------CCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCc
Confidence 8999999999999999999999762 389999999999999999999999999999999999999999999
Q ss_pred eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCC
Q 022170 160 TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239 (301)
Q Consensus 160 ~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (301)
++|+|+.|.++.+|++||++.++++.+++|++.|++++|+|++.++++++.+++.||.++++.+ ++++++|++
T Consensus 158 i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~-------~m~~~~~~p 230 (286)
T COG2084 158 IVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGP-------RMLEGDFSP 230 (286)
T ss_pred eEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcc-------hhhcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999887753 467899999
Q ss_pred CcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHh
Q 022170 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 295 (301)
Q Consensus 240 ~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 295 (301)
+|.++++.||++++.+++++.++++|+...+.++|+.+.++|+|++|++++++.|+
T Consensus 231 ~F~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 231 GFAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999874
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=384.29 Aligned_cols=281 Identities=47% Similarity=0.707 Sum_probs=262.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+|+.+|.++||+|++|||+.++.+.+.+.|++++.||.|+++.||+||+|||++.+ +++++.+..+++++. .+.+
T Consensus 46 MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~-v~~v~~g~~Gvl~g~-~~g~ 123 (327)
T KOG0409|consen 46 MGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKD-VKDVLLGKSGVLSGI-RPGK 123 (327)
T ss_pred chHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHh-hHHHhcCCCcceeec-cCCC
Confidence 89999999999999999999999999999999999999999999999999999999998 999999999999863 2333
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+..||+||++|.+++++++.+..+ +.+|+|+||+|+...+++|+|+||+|||++.++.+.++|+.+++++
T Consensus 124 ~~~vDmSTidp~~s~ei~~~i~~~----------~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~ 193 (327)
T KOG0409|consen 124 KATVDMSTIDPDTSLEIAKAISNK----------GGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNV 193 (327)
T ss_pred ceEEeccccCHHHHHHHHHHHHhC----------CCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceE
Confidence 444999999999999999998752 3799999999999999999999999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++|..|+++++|+++|++.+..+.+++|++.|++++|+|+.+++++++.|.+.|+ ..++|+|+++ .++|.++
T Consensus 194 ~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~--~~~~~~p~m~-----k~dy~p~ 266 (327)
T KOG0409|consen 194 VFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSS--MFYNPVPGML-----KGDYNPG 266 (327)
T ss_pred EEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccH--HHhCcCchhh-----cCCCCCc
Confidence 99999999999999999999999999999999999999999999999999765555 4567777655 5799999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhCCCCC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 300 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 300 (301)
|.++++.||++++.+.+.+.+.|+|+...+.|+|+...+.|+|+.|+++||+.+++.++.
T Consensus 267 f~~~~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~~ 326 (327)
T KOG0409|consen 267 FALKLMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNGI 326 (327)
T ss_pred chHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999987765
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=362.38 Aligned_cols=276 Identities=33% Similarity=0.500 Sum_probs=254.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||++|.++||+|++|||++. .+.+.+.|+..+.++.++++++|+||+|||++.+ +++++.+..++++. ..++
T Consensus 11 MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~-v~~v~~~~~g~~~~--~~~g 86 (292)
T PRK15059 11 MGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQ-VEEVLFGENGCTKA--SLKG 86 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHH-HHHHHcCCcchhcc--CCCC
Confidence 899999999999999999999985 5777778888889999999999999999999887 99999876666654 3567
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||++|.+++++++.+.+. ++.|+|+|++|++..++.|++++++||+++.+++++|+|+.+++++
T Consensus 87 ~ivvd~sT~~p~~~~~~~~~~~~~----------G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~ 156 (292)
T PRK15059 87 KTIVDMSSISPIETKRFARQVNEL----------GGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNI 156 (292)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHc----------CCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCc
Confidence 899999999999999999998752 3789999999999999999999999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+|+|+.|+|+.+|+++|++.+.++.+++|++.+++++|+|+++++++++.+++.||.++.+.+ ++.+++|+++
T Consensus 157 ~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~ 229 (292)
T PRK15059 157 TLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGE-------RMIKRTFNPG 229 (292)
T ss_pred EEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhch-------hhhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999988888888765543 3567899999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhCC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 297 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 297 (301)
|+++++.||++++.+++++.|+++|+.+.+.++|+.+.+.|+|++|++++++++++.
T Consensus 230 f~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~ 286 (292)
T PRK15059 230 FKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELM 286 (292)
T ss_pred CchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999988763
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-51 Score=361.04 Aligned_cols=281 Identities=48% Similarity=0.800 Sum_probs=258.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||++|.++||+|++|||++++.+.+.+.|+..++++.++++++|+||+|||++.+ +++++.+.+++.+. ..++
T Consensus 7 mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~-~~~v~~g~~~l~~~--~~~g 83 (288)
T TIGR01692 7 MGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQH-VISVYSGDEGILPK--VAKG 83 (288)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHH-HHHHHcCcchHhhc--CCCC
Confidence 89999999999999999999999999999999998888999999999999999998777 89998765566654 3467
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||++|++++++++.+.+. ++.|+|+|++|++..+..|++++|+||+++.+++++++|+.+++++
T Consensus 84 ~~vid~st~~p~~~~~~~~~~~~~----------g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~ 153 (288)
T TIGR01692 84 SLLIDCSTIDPDSARKLAELAAAH----------GAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNI 153 (288)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHc----------CCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCe
Confidence 899999999999999999988752 3789999999999999999999999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++|+.|.++++|+++|++.+.++.+++|++.+++++|+|+++++++++.+++.+|....+.+.+++....+.+++|+++
T Consensus 154 ~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (288)
T TIGR01692 154 VHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGG 233 (288)
T ss_pred EeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999988888777666655555444567899999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHH
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 294 (301)
|++..+.||++++.+++++.|+++|+.+.+.++|+++.++|+|++|++++++++
T Consensus 234 f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 234 FGTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred cchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999976
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-50 Score=352.86 Aligned_cols=277 Identities=30% Similarity=0.453 Sum_probs=252.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||.+|+++||+|++|||++++.+.+.+.|+..+.++.++++++|+||+|+|++.+ +++++.+..++++. ..++
T Consensus 12 mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~-~~~vl~~~~~i~~~--l~~g 88 (296)
T PRK15461 12 MGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDL-VRSVLFGENGVCEG--LSRD 88 (296)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHH-HHHHHcCcccHhhc--CCCC
Confidence 89999999999999999999999999999999998889999999999999999998877 89998876677654 3567
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||++|.+++++.+.+.+. ++.|+|+|++|++..+..|++++++||+++.+++++++|+.++.++
T Consensus 89 ~lvid~sT~~p~~~~~l~~~l~~~----------g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~ 158 (296)
T PRK15461 89 ALVIDMSTIHPLQTDKLIADMQAK----------GFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNEL 158 (296)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHc----------CCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCe
Confidence 899999999999999999998752 3789999999999999999999999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++|+.|.|+.+|+++|++...++.+++|++.+++++|+|++.+++++..+...++.+... .+ ..+.+++|+++
T Consensus 159 ~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~--~~----~~~~~~~~~~~ 232 (296)
T PRK15461 159 INAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTT--WP----NKVLKGDLSPA 232 (296)
T ss_pred EeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHcc--cc----chhccCCCCCC
Confidence 9999999999999999999999999999999999999999999999999876555543322 11 13567899999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
|+++.+.||++++.+++++.|+++|+.+.+.++|+.+.++|+|++||+++++++++
T Consensus 233 f~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 233 FMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred cchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998865
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=390.64 Aligned_cols=278 Identities=22% Similarity=0.389 Sum_probs=258.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||.+|+++||+|++|||++++++.+.+.|+..++|+.|++++||+||+|||++.+ +++|+++..+++++ ..+|
T Consensus 15 MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~-v~~V~~g~~g~~~~--l~~g 91 (1378)
T PLN02858 15 LSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQ-VDDVFFGDEGAAKG--LQKG 91 (1378)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHH-HHHHHhchhhHHhc--CCCc
Confidence 89999999999999999999999999999999999999999999999999999999988 99999887777765 3567
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++|||||++|.+++++++.+.+. + .++.|+|+||+|++..++.|++++|+||+++.+++++|+|+.++.++
T Consensus 92 ~iivd~STi~p~~~~~la~~l~~~-----g---~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i 163 (1378)
T PLN02858 92 AVILIRSTILPLQLQKLEKKLTER-----K---EQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKL 163 (1378)
T ss_pred CEEEECCCCCHHHHHHHHHHHHhc-----C---CceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCce
Confidence 899999999999999999998752 1 01689999999999999999999999999999999999999999998
Q ss_pred Eee-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCC
Q 022170 161 IYC-GGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239 (301)
Q Consensus 161 ~~~-g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (301)
+++ |+.|+|+.+|+++|++.+.++.+++|++.+++++|+|++.++++++.+++.||.+.++.+ .+++++|.+
T Consensus 164 ~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~-------~~~~~d~~~ 236 (1378)
T PLN02858 164 YTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVP-------LLLKDDYIE 236 (1378)
T ss_pred EEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhh-------HhhcCCCCC
Confidence 865 999999999999999999999999999999999999999999999999999988765532 356789999
Q ss_pred CcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 240 ~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
+|+++++.||++++.+++++.|+++|+++.+.++|+.+.+.|+|+.|++++++++++
T Consensus 237 ~F~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~ 293 (1378)
T PLN02858 237 GRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEK 293 (1378)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998864
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=331.98 Aligned_cols=277 Identities=36% Similarity=0.546 Sum_probs=252.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||.+|+++||+|++|||++++.+.+.+.|...++++.+++++||+||+|+|++.. +++++....++++. ..++
T Consensus 10 mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~-~~~v~~~~~~~~~~--~~~g 86 (291)
T TIGR01505 10 MGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQ-VEEVAFGENGIIEG--AKPG 86 (291)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHH-HHHHHcCcchHhhc--CCCC
Confidence 89999999999999999999999999999999988888999999999999999998877 88887654445543 3467
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||++|.+++++.+.+.+ . +++|+++|++|++..+..+++.+++||+++++++++++|+.++.++
T Consensus 87 ~iivd~st~~~~~~~~l~~~l~~------~----g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~ 156 (291)
T TIGR01505 87 KTLVDMSSISPIESKRFAKAVKE------K----GIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNI 156 (291)
T ss_pred CEEEECCCCCHHHHHHHHHHHHH------c----CCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCe
Confidence 89999999999999999998875 2 3799999999999999999999999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++|+.|.++.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+.+.++.+..+.+ ++.+++|.++
T Consensus 157 ~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~ 229 (291)
T TIGR01505 157 VLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGE-------RVIDRTFKPG 229 (291)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhCh-------hhhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999988877776554322 3457899999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhCC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 297 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 297 (301)
|+++++.||+.++.+++++.|+++|+++++.++|+.+.++|+|++|++++++++++.
T Consensus 230 f~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~ 286 (291)
T TIGR01505 230 FRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELL 286 (291)
T ss_pred cchHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998764
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=326.90 Aligned_cols=276 Identities=36% Similarity=0.511 Sum_probs=251.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.++|.+|++.||+|++|||++++.+.+.+.|+..++++.++++++|+||+|+|++.. ++.++...+++++. ..++
T Consensus 13 mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~-~~~v~~~~~~~~~~--~~~g 89 (296)
T PRK11559 13 MGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPH-VKEVALGENGIIEG--AKPG 89 (296)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHH-HHHHHcCcchHhhc--CCCC
Confidence 79999999999999999999999999999888888888999999999999999998877 88888654445543 3567
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
++++|+||++|.+++++.+.+.+ . +++|+++|+++++..+..+++.+++||+++.+++++++|+.++.++
T Consensus 90 ~iiid~st~~~~~~~~l~~~~~~------~----g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~ 159 (296)
T PRK11559 90 TVVIDMSSIAPLASREIAAALKA------K----GIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV 159 (296)
T ss_pred cEEEECCCCCHHHHHHHHHHHHH------c----CCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCe
Confidence 89999999999999999998865 2 3789999999999999999999999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++|+.|+|+.+|+++|++.+.++.+++|++.++++.|+|++++++++..+.+.|+.+..+.+ ++..++|.++
T Consensus 160 ~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~d~~~~ 232 (296)
T PRK11559 160 VHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------MVMDRNFKPG 232 (296)
T ss_pred EEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhch-------HhhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999988877777654433 2456899999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
|++++..||++++.+++++.|+++|+++.+++.|+.+.+.|+|+.||+++++++.+
T Consensus 233 f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (296)
T PRK11559 233 FRIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEK 288 (296)
T ss_pred cchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998865
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-45 Score=371.42 Aligned_cols=278 Identities=26% Similarity=0.410 Sum_probs=255.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||.+|+++||+|++|||++++.+.+.+.|+..+.++.+++++||+||+|||++.+ +++|+.+..++++. ..+|
T Consensus 335 MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~-v~~Vl~g~~g~~~~--l~~g 411 (1378)
T PLN02858 335 MGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQ-AENVLFGDLGAVSA--LPAG 411 (1378)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHH-HHHHHhchhhHHhc--CCCC
Confidence 89999999999999999999999999999999988889999999999999999999888 99999876677764 3567
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++|||||++|.+++++++.+.+. .. ++.|+|+|++|++..+..|++++|+||+++.+++++++|+.++.++
T Consensus 412 ~ivVd~STvsP~~~~~la~~l~~~----g~----g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i 483 (1378)
T PLN02858 412 ASIVLSSTVSPGFVIQLERRLENE----GR----DIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKL 483 (1378)
T ss_pred CEEEECCCCCHHHHHHHHHHHHhh----CC----CcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcE
Confidence 899999999999999999988641 02 4899999999999999999999999999999999999999999999
Q ss_pred Eee-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCC
Q 022170 161 IYC-GGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239 (301)
Q Consensus 161 ~~~-g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (301)
+++ |++|+|+++|+++|++.+.++++++|++.+++++|+|+++++++++.+++.||.+..+.| .+++++|++
T Consensus 484 ~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~-------~~l~~d~~~ 556 (1378)
T PLN02858 484 YVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVP-------HMLDNDYTP 556 (1378)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccc-------hhhcCCCCC
Confidence 885 679999999999999999999999999999999999999999999999888887765433 356789999
Q ss_pred CcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 240 ~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
+|+++.+.||++++.+++++.|+++|+++.+.++|+.+.++|+|+.|++++++++++
T Consensus 557 ~f~l~l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 557 YSALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998864
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=315.15 Aligned_cols=255 Identities=20% Similarity=0.254 Sum_probs=223.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----CCC---CCCCHHHHHhc---CCEEEEecCCCccchhhhhcCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVP---TKETPFEVAEA---SDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g~~---~~~s~~e~~~~---adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
||.+||+||+++||+|++|||++++++.+.+. |+. .+.|++|+++. +|+||+|||++.+ +++|+. +
T Consensus 17 MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~a-V~~Vi~---g 92 (493)
T PLN02350 17 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAP-VDQTIK---A 92 (493)
T ss_pred HHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHH-HHHHHH---H
Confidence 99999999999999999999999999998764 544 67899999986 9999999999988 999984 3
Q ss_pred cccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHH
Q 022170 71 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 150 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~ 150 (301)
+++. ..+|.++||+||++|.+++++++.+.+ . +++|+++||+|++..++.|+ ++|+|||++++++++
T Consensus 93 l~~~--l~~G~iiID~sT~~~~~t~~~~~~l~~------~----Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~ 159 (493)
T PLN02350 93 LSEY--MEPGDCIIDGGNEWYENTERRIKEAAE------K----GLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIE 159 (493)
T ss_pred HHhh--cCCCCEEEECCCCCHHHHHHHHHHHHH------c----CCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHH
Confidence 5544 346789999999999999999998875 2 38999999999999999999 999999999999999
Q ss_pred HHHHhcCC------CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HhhcCCCcccccc
Q 022170 151 PLFLSMGK------NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKI---LNSSSARCWSSDS 220 (301)
Q Consensus 151 ~ll~~~~~------~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~-~G~~~~~~~~~---~~~~~~~~~~~~~ 220 (301)
|+|+.++. .++|+|+.|+|+.+|+++|.+.+..+++++|++.++++ .|+|++++.++ ++.+.+.|++.+.
T Consensus 160 pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei 239 (493)
T PLN02350 160 DILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEI 239 (493)
T ss_pred HHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHH
Confidence 99999995 48999999999999999999999999999999999999 59999999998 6677778887665
Q ss_pred CCCCCCcccCCCCCC-CCCCCcchhhHHHHHH------HHHHHHHHcCCCchH-HHHHHHHHHHHHH
Q 022170 221 YNPVPGVMEGVPASR-NYGGGFASKLMAKDLN------LALASAKEVGVDCPL-TSQAQDIYAKLCE 279 (301)
Q Consensus 221 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~-~~~~~~~~~~a~~ 279 (301)
..+ .+..+ +|.++|.++.+.||+. +..+.+.+.|+|+|+ .+++.+.|.+..+
T Consensus 240 ~~~-------~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k 299 (493)
T PLN02350 240 TAD-------IFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLK 299 (493)
T ss_pred HHH-------HHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence 432 12233 4777899999999999 899999999999999 7777777776644
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-42 Score=302.62 Aligned_cols=270 Identities=20% Similarity=0.273 Sum_probs=237.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhc---CCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~---adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||.+||.+|.++||+|++|||++++.+.+.+.|+..+.++++++++ +|+||+|+|++.. +++++.+ +.+. .
T Consensus 11 mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~-~~~v~~~---i~~~--l 84 (299)
T PRK12490 11 MGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEV-TESVIKD---LYPL--L 84 (299)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchH-HHHHHHH---Hhcc--C
Confidence 8999999999999999999999999999988898888999999876 6999999998866 8898854 3332 2
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcC
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG 157 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~ 157 (301)
.+++++||+||++|.+++++++.+.+ . ++.|+|+||+|++..+..|+ ++++||+++++++++++|+.++
T Consensus 85 ~~g~ivid~st~~~~~~~~~~~~~~~------~----g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~ 153 (299)
T PRK12490 85 SPGDIVVDGGNSRYKDDLRRAEELAE------R----GIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALA 153 (299)
T ss_pred CCCCEEEECCCCCchhHHHHHHHHHH------c----CCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999998865 2 37999999999999999998 8999999999999999999999
Q ss_pred C---CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhcC-CCccccccCCCCCCcccCC
Q 022170 158 K---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG--ISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGV 231 (301)
Q Consensus 158 ~---~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 231 (301)
. +++|+|++|.|+.+|+++|++.+.++.+++|++.++++.| +|+++++++++.++ +.|+.++.+.+ .
T Consensus 154 ~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~--~----- 226 (299)
T PRK12490 154 PEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVK--A----- 226 (299)
T ss_pred CcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHH--H-----
Confidence 7 7899999999999999999999999999999999999999 99999999999654 77777654432 1
Q ss_pred CCCCCCCCCcchhhHHHHH---HHHHHHHHHcCCCchHHHHHH-HHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 232 PASRNYGGGFASKLMAKDL---NLALASAKEVGVDCPLTSQAQ-DIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 232 ~~~~~~~~~~~~~~~~kd~---~~~~~~a~~~g~~~p~~~~~~-~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
+.++++ .+.++...||+ +++++.+++.|+|+|++..+. .++....++|.|..|++++.+++-.
T Consensus 227 ~~~~~~--~~~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~~ 293 (299)
T PRK12490 227 LAEDPK--LAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGG 293 (299)
T ss_pred HhhCCC--hhhhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhCC
Confidence 223332 35789999998 799999999999999999996 8999999999999999999987743
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=285.81 Aligned_cols=267 Identities=18% Similarity=0.259 Sum_probs=229.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhc---CCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~---adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||.+||++|+++||+|++|||++++.+.+.+.|+..+++++++++. +|+||+|+|++.. +++++.+ +.+. .
T Consensus 11 MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~-~~~v~~~---l~~~--l 84 (301)
T PRK09599 11 MGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEI-TDATIDE---LAPL--L 84 (301)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcH-HHHHHHH---HHhh--C
Confidence 8999999999999999999999999999999999999999998875 6999999998766 8888754 3332 2
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcC
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG 157 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~ 157 (301)
.++.++||+||++|.+++++++.+.+. ++.|+|+|++|++..++.|. ++|+||+++++++++++|+.++
T Consensus 85 ~~g~ivid~st~~~~~~~~~~~~~~~~----------g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~ 153 (301)
T PRK09599 85 SPGDIVIDGGNSYYKDDIRRAELLAEK----------GIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALA 153 (301)
T ss_pred CCCCEEEeCCCCChhHHHHHHHHHHHc----------CCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHc
Confidence 356899999999999999999888752 38999999999999999996 8999999999999999999999
Q ss_pred C----CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhhcC-CCccccccCCCCCCcccC
Q 022170 158 K----NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS--LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEG 230 (301)
Q Consensus 158 ~----~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~--~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 230 (301)
. +++|+|+.|+|+.+|+++|++.+..+..++|++.++++ .|+|+++++++++.++ ..|+.+....+ .
T Consensus 154 ~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~---~--- 227 (301)
T PRK09599 154 PRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTAD---A--- 227 (301)
T ss_pred ccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHH---H---
Confidence 8 89999999999999999999999999999999999999 9999999999999875 57776654322 1
Q ss_pred CCCCCCCCCCcc-hhhHHHH---HHHHHHHHHHcCCCchHHHHHH-HHHHHHHHCCCCCCchHHHHHHH
Q 022170 231 VPASRNYGGGFA-SKLMAKD---LNLALASAKEVGVDCPLTSQAQ-DIYAKLCENGHDSKDFSCVFQHY 294 (301)
Q Consensus 231 ~~~~~~~~~~~~-~~~~~kd---~~~~~~~a~~~g~~~p~~~~~~-~~~~~a~~~g~g~~d~~~~~~~~ 294 (301)
+.++ +.|. +....|| ++++.+.+.+.++++|.+.++. ..|....+.|+|+.|.+++.++|
T Consensus 228 --~~~~--~~~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f 292 (301)
T PRK09599 228 --LAED--PKLDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGF 292 (301)
T ss_pred --HhcC--CCHHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhc
Confidence 1222 2232 3334555 5889999999999999999955 46889999999999999998876
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=279.21 Aligned_cols=246 Identities=22% Similarity=0.289 Sum_probs=206.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----CCCCCCCHHHHHhc---CCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAEA---SDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~e~~~~---adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||.+||+||+++||+|.+|||++++++.+.+. |+..+.|++++++. +|+||+|||++.+ +++|+.+ ++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~-v~~Vi~~---l~ 76 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAP-VDAVIEQ---LL 76 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchH-HHHHHHH---HH
Confidence 99999999999999999999999999999874 48888999999875 8999999999988 9999854 45
Q ss_pred cCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHH
Q 022170 73 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 152 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 152 (301)
+. ..+|.++||+||+.|..++++.+.+.+ . +++|+++||+|++..++.|. ++|+||+++++++++|+
T Consensus 77 ~~--l~~GdiiID~gn~~~~~t~~~~~~l~~------~----Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~pi 143 (459)
T PRK09287 77 PL--LEKGDIIIDGGNSNYKDTIRREKELAE------K----GIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPI 143 (459)
T ss_pred hc--CCCCCEEEECCCCCHHHHHHHHHHHHh------c----CCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHH
Confidence 43 246789999999999999999988865 2 38999999999999999998 99999999999999999
Q ss_pred HHhcCCCe-------EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCCccccccC
Q 022170 153 FLSMGKNT-------IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSY 221 (301)
Q Consensus 153 l~~~~~~~-------~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~-~~G~~~~~~~~~~---~~~~~~~~~~~~~ 221 (301)
|+.++.++ +|+|+.|+|+.+||++|.+.+..+++++|++.+++ +.|++++++.+++ +.+...||+.+..
T Consensus 144 L~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~ 223 (459)
T PRK09287 144 LEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEIT 223 (459)
T ss_pred HHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhH
Confidence 99999886 89999999999999999999999999999999999 5899999998888 5777788877654
Q ss_pred CCCCCcccCCCCCCCCCCCc-chhhHH-----H-HHHHHHHHHHHcCCCchHHHHH
Q 022170 222 NPVPGVMEGVPASRNYGGGF-ASKLMA-----K-DLNLALASAKEVGVDCPLTSQA 270 (301)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-----k-d~~~~~~~a~~~g~~~p~~~~~ 270 (301)
.+ .+..+||..+. -++... | .-+.....|-++|+|.|.+...
T Consensus 224 ~~-------~l~~~d~~~~~~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~A 272 (459)
T PRK09287 224 AD-------ILRQKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEA 272 (459)
T ss_pred hH-------HHhcCCCCCCCcchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHH
Confidence 32 12344553222 222221 1 2246777888889999887764
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=250.22 Aligned_cols=246 Identities=22% Similarity=0.326 Sum_probs=207.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHH---hcCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA---EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~---~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||.+||.+|.++||+|.+|||++++++.+.+.|+..+.++.+++ ..+|+||+|+|++ . +++++.+..+.+
T Consensus 11 mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~-~~~v~~~l~~~l----- 83 (298)
T TIGR00872 11 MGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-I-VDAVLEELAPTL----- 83 (298)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-H-HHHHHHHHHhhC-----
Confidence 89999999999999999999999999999998887778887765 4589999999987 6 899986533322
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcC
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG 157 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~ 157 (301)
.+++++||+||..|.++.++.+.+.+ . +++|+++|++|++..++.| +.+++||+++.+++++++|+.++
T Consensus 84 ~~g~ivid~st~~~~~t~~~~~~~~~------~----g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~ 152 (298)
T TIGR00872 84 EKGDIVIDGGNSYYKDSLRRYKLLKE------K----GIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVA 152 (298)
T ss_pred CCCCEEEECCCCCcccHHHHHHHHHh------c----CCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhc
Confidence 35689999999999999999888765 2 3799999999999999999 59999999999999999999998
Q ss_pred C---CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhcC-CCccccccCCCCCCcccCC
Q 022170 158 K---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL--GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGV 231 (301)
Q Consensus 158 ~---~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~--G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 231 (301)
. .++|+|+.|+++.+|+++|.+.+..+..++|++.++++. |+|++++.++++.++ ..||+++...+ .+
T Consensus 153 ~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~---~~--- 226 (298)
T TIGR00872 153 PEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAI---AF--- 226 (298)
T ss_pred CcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHH---HH---
Confidence 6 589999999999999999999999999999999999998 569999999999886 57777654322 11
Q ss_pred CCCCCCCCCcchh-hHHHHHHHHHHHHHHcCCCchHHHHHH
Q 022170 232 PASRNYGGGFASK-LMAKDLNLALASAKEVGVDCPLTSQAQ 271 (301)
Q Consensus 232 ~~~~~~~~~~~~~-~~~kd~~~~~~~a~~~g~~~p~~~~~~ 271 (301)
..+++-+.|... ...+|.+.+...+.+.|+|+|.+.+..
T Consensus 227 -~~~~~~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al 266 (298)
T TIGR00872 227 -RESPDLAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSL 266 (298)
T ss_pred -hcCCcHHHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHH
Confidence 122222334433 356788999999999999999999954
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=259.26 Aligned_cols=252 Identities=20% Similarity=0.257 Sum_probs=203.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----C--CCCCCCHHHHHh---cCCEEEEecCCCccchhhhhcCCCcc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAE---ASDVVITMLPSSSHQVLDVYNGPNGL 71 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~e~~~---~adiVi~~vp~~~~~~~~v~~~~~~~ 71 (301)
||++||.+|+++||+|++|||++++++.+.+. | +..+.+++++++ ++|+||+|||++.. +++++.+..+.
T Consensus 12 MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~-v~~vi~~l~~~ 90 (470)
T PTZ00142 12 MGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEA-VDETIDNLLPL 90 (470)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHH-HHHHHHHHHhh
Confidence 89999999999999999999999999988764 5 346789999987 48999999998887 99998653333
Q ss_pred ccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHH
Q 022170 72 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 151 (301)
Q Consensus 72 l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ 151 (301)
+ .++.+|||+||..|..++++.+.+.+ . +++|+++||+|++..++.|+ ++|+||+++++++++|
T Consensus 91 L-----~~g~iIID~gn~~~~dt~~r~~~l~~------~----Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~p 154 (470)
T PTZ00142 91 L-----EKGDIIIDGGNEWYLNTERRIKRCEE------K----GILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKD 154 (470)
T ss_pred C-----CCCCEEEECCCCCHHHHHHHHHHHHH------c----CCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHH
Confidence 2 46789999999999999999988875 2 38999999999999999999 8999999999999999
Q ss_pred HHHhcCCC------eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCCccccccC
Q 022170 152 LFLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSY 221 (301)
Q Consensus 152 ll~~~~~~------~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~-~~G~~~~~~~~~~---~~~~~~~~~~~~~ 221 (301)
+|+.++.+ ++|+|+.|+|+.+||++|.+.+..+++++|++.|++ +.|+|++++.+++ +.+...||+.+..
T Consensus 155 iL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~ 234 (470)
T PTZ00142 155 ILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEIT 234 (470)
T ss_pred HHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHH
Confidence 99999987 899999999999999999999999999999999998 7999999998887 5777777776543
Q ss_pred CCCCCcccCCCCCCCCCC-CcchhhHH------HHHHHHHHHHHHcCCCchHHHHHH-HHHHH
Q 022170 222 NPVPGVMEGVPASRNYGG-GFASKLMA------KDLNLALASAKEVGVDCPLTSQAQ-DIYAK 276 (301)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~-~~~~~~~~------kd~~~~~~~a~~~g~~~p~~~~~~-~~~~~ 276 (301)
... +. ..|-.+ ++-++... -.=+.....|-++|+|.|.+.++. ..+.+
T Consensus 235 ~~~---~~----~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S 290 (470)
T PTZ00142 235 AKI---LA----KKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNIS 290 (470)
T ss_pred HHH---hh----cccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhh
Confidence 211 10 000000 11122111 122467778889999999887764 34433
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=256.00 Aligned_cols=247 Identities=19% Similarity=0.271 Sum_probs=199.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----CCCCCCCHHHHHh---cCCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAE---ASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~e~~~---~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||.+||++|+++||+|++|||++++++.+.+. ++..+.+++++++ .+|+||+|||++.. +++++.+ ++
T Consensus 10 MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~-v~~Vi~~---l~ 85 (467)
T TIGR00873 10 MGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAP-VDAVINQ---LL 85 (467)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHH-HHHHHHH---HH
Confidence 89999999999999999999999999999876 2556778888774 68999999998777 8999854 33
Q ss_pred cCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHH
Q 022170 73 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 152 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 152 (301)
+. ..++.+|||+||+.|.++.+..+.+.+ . +++|+++||+|++..++.|. ++|+||+++++++++|+
T Consensus 86 ~~--L~~g~iIID~gns~~~~t~~~~~~l~~------~----gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~ 152 (467)
T TIGR00873 86 PL--LEKGDIIIDGGNSHYPDTERRYKELKA------K----GILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPI 152 (467)
T ss_pred hh--CCCCCEEEECCCcCHHHHHHHHHHHHh------c----CCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHH
Confidence 32 246789999999999999888887764 2 38999999999999999998 99999999999999999
Q ss_pred HHhcCCC------eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCCccccccCC
Q 022170 153 FLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSYN 222 (301)
Q Consensus 153 l~~~~~~------~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~-~~G~~~~~~~~~~---~~~~~~~~~~~~~~ 222 (301)
|+.++.+ ++|+|+.|+|+.+|+++|.+.+.++++++|++.|++ +.|+|++++.+++ +.+...||+.+...
T Consensus 153 L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~ 232 (467)
T TIGR00873 153 FQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITA 232 (467)
T ss_pred HHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHH
Confidence 9999986 489999999999999999999999999999999985 7999999999998 56777788776443
Q ss_pred CCCCcccCCCCCCCCCCCcchhhHH------HHHHHHHHHHHHcCCCchHHHHHH
Q 022170 223 PVPGVMEGVPASRNYGGGFASKLMA------KDLNLALASAKEVGVDCPLTSQAQ 271 (301)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~------kd~~~~~~~a~~~g~~~p~~~~~~ 271 (301)
+. +. .+|-+..+-++... -.-+.....|-++|+|.|.+.+..
T Consensus 233 ~~--~~-----~~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av 280 (467)
T TIGR00873 233 DI--LK-----KKDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESV 280 (467)
T ss_pred HH--Hh-----ccCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHH
Confidence 21 11 11111111111111 122467778888999999887653
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-32 Score=249.32 Aligned_cols=247 Identities=16% Similarity=0.189 Sum_probs=197.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-------------------CC-CCCCCCHHHHHhcCCEEEEecCCCcc-
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-------------------MG-VPTKETPFEVAEASDVVITMLPSSSH- 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-------------------~g-~~~~~s~~e~~~~adiVi~~vp~~~~- 59 (301)
||.++|.+|+++||+|++||+++++++.+++ .| ++.++++.++++++|+||+|||++..
T Consensus 11 ~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvii~vpt~~~~ 90 (411)
T TIGR03026 11 VGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVIIICVPTPLKE 90 (411)
T ss_pred hhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEEEEeCCCCCC
Confidence 8999999999999999999999999988764 13 45667888889999999999998742
Q ss_pred -------chhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhc
Q 022170 60 -------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 132 (301)
Q Consensus 60 -------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~ 132 (301)
++.+++. .+.+. ..+++++|++||++|++++++.+.+.+. ..|. ..+.+.|+.++|..+..
T Consensus 91 ~~~~d~~~v~~~~~---~i~~~--l~~g~lvi~~STv~pgt~~~l~~~~~~~----~~g~---~~~~d~~v~~~Pe~~~~ 158 (411)
T TIGR03026 91 DGSPDLSYVESAAE---TIAKH--LRKGATVVLESTVPPGTTEEVVKPILER----ASGL---KLGEDFYLAYNPEFLRE 158 (411)
T ss_pred CCCcChHHHHHHHH---HHHHh--cCCCCEEEEeCcCCCCchHHHHHHHHHh----hcCC---CCCCCceEEECCCcCCC
Confidence 1444443 33332 2457899999999999999997665431 0110 01345555555555556
Q ss_pred cce--------EEEecCCHHHHHHHHHHHHhcC-CCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 022170 133 GTL--------TFMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 203 (301)
Q Consensus 133 g~l--------~~~~gg~~~~~~~~~~ll~~~~-~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~ 203 (301)
|++ .+++|++++.+++++++|+.++ ..++++++++.|+++|+++|++.++++++++|+..+|++.|+|+++
T Consensus 159 G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~~ 238 (411)
T TIGR03026 159 GNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVYE 238 (411)
T ss_pred CChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 665 7899999999999999999998 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022170 204 LTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 277 (301)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 277 (301)
++++++.+. ++..++|.++ |...++.||+.++.+.+++.|+++|+++++.++.+.-
T Consensus 239 v~~~~~~~~------------------~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~ 296 (411)
T TIGR03026 239 VIEAAGTDP------------------RIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQ 296 (411)
T ss_pred HHHHhCCCC------------------CCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 999998652 1122445554 5678899999999999999999999999998876543
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=213.20 Aligned_cols=151 Identities=42% Similarity=0.629 Sum_probs=134.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||++|.++||+|++|||++++.+++.+.|++.++|+.|+++++|+||+|||++.+ +++++.+.. +++. ..++
T Consensus 12 mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~-v~~v~~~~~-i~~~--l~~g 87 (163)
T PF03446_consen 12 MGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDA-VEAVLFGEN-ILAG--LRPG 87 (163)
T ss_dssp HHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHH-HHHHHHCTT-HGGG--S-TT
T ss_pred HHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchh-hhhhhhhhH-Hhhc--cccc
Confidence 89999999999999999999999999999999999999999999999999999999888 999998866 6665 3578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||++|++++++++.+.+. +++|+|+|++|++..++.|++++++||+++++++++++|+.++.++
T Consensus 88 ~iiid~sT~~p~~~~~~~~~~~~~----------g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v 157 (163)
T PF03446_consen 88 KIIIDMSTISPETSRELAERLAAK----------GVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNV 157 (163)
T ss_dssp EEEEE-SS--HHHHHHHHHHHHHT----------TEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEE
T ss_pred eEEEecCCcchhhhhhhhhhhhhc----------cceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999998752 3899999999999999999999999999999999999999999999
Q ss_pred Ee-eCC
Q 022170 161 IY-CGG 165 (301)
Q Consensus 161 ~~-~g~ 165 (301)
+| +|+
T Consensus 158 ~~~~G~ 163 (163)
T PF03446_consen 158 YHYVGP 163 (163)
T ss_dssp EEE-ES
T ss_pred eeeeCc
Confidence 84 475
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-30 Score=229.59 Aligned_cols=271 Identities=16% Similarity=0.172 Sum_probs=213.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------C------CCCCCCHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------G------VPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------g------~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
||++||.+|+++||+|++|+|++++.+.+.+. | +..+++++++++.+|+||+|+|+. + +++++.
T Consensus 15 mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~~-~-~~~v~~ 92 (328)
T PRK14618 15 WGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPSK-A-LRETLA 92 (328)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECchH-H-HHHHHH
Confidence 89999999999999999999999988888764 3 335668889889999999999966 4 788874
Q ss_pred CCCccccCCCCCCCeEEEEeCC-CCHHH--HHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCH
Q 022170 67 GPNGLLQGGNSVRPQLLIDSST-IDPQT--SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSE 143 (301)
Q Consensus 67 ~~~~~l~~~~~~~~~ivid~st-~~p~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~ 143 (301)
. + .++.++|++++ +.|.+ .+.+++.+.+. ... ++.++.+|..........+++++++|+++
T Consensus 93 ~----l-----~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~---~~~----~~~~~~gP~~a~~~~~~~~~~~~~~~~~~ 156 (328)
T PRK14618 93 G----L-----PRALGYVSCAKGLAPDGGRLSELARVLEFL---TQA----RVAVLSGPNHAEEIARFLPAATVVASPEP 156 (328)
T ss_pred h----c-----CcCCEEEEEeeccccCCCccchHHHHHHHh---cCC----CeEEEECccHHHHHHcCCCeEEEEEeCCH
Confidence 3 1 23468888887 67664 66777766430 001 25678888777666666678899999999
Q ss_pred HHHHHHHHHHHhcCCCeE--------eeCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022170 144 DAYQAAKPLFLSMGKNTI--------YCGG---------AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 206 (301)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~--------~~g~---------~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~ 206 (301)
+.+++++++|+..+.+++ +++. .|.+..+|+.+|+..+.++++++|+..++++.|++++++++
T Consensus 157 ~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~ 236 (328)
T PRK14618 157 GLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYG 236 (328)
T ss_pred HHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchhc
Confidence 999999999999988776 3443 48889999999999999999999999999999999999999
Q ss_pred HHhhc----CCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCC
Q 022170 207 ILNSS----SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGH 282 (301)
Q Consensus 207 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~ 282 (301)
+.+.+ ++.|+.++++.++..+..+... .+|.++|.+.++.||++.+.+++++.++++|+++.+++++ +
T Consensus 237 ~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~-~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~-------~ 308 (328)
T PRK14618 237 LSGLGDLIATATSPHSRNRAAGEAIVRGVDR-EHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVA-------R 308 (328)
T ss_pred CcchhheeeEeccCCCccHHHHHHHhCCCCH-HHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------h
Confidence 98874 5778777766433333322110 1256678999999999999999999999999999999988 4
Q ss_pred CCCchHHHHHHHhCC
Q 022170 283 DSKDFSCVFQHYYGG 297 (301)
Q Consensus 283 g~~d~~~~~~~~~~~ 297 (301)
++.|..++++.+.+.
T Consensus 309 ~~~~~~~~~~~~~~~ 323 (328)
T PRK14618 309 GGWDPLAGLRSLMGR 323 (328)
T ss_pred CCCCHHHHHHHHhcC
Confidence 667877777777543
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=225.42 Aligned_cols=247 Identities=13% Similarity=0.147 Sum_probs=189.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC----------------CCCCHHHHHhcCCEEEEecCCC------c
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP----------------TKETPFEVAEASDVVITMLPSS------S 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~----------------~~~s~~e~~~~adiVi~~vp~~------~ 58 (301)
||.+||.+|++ ||+|++||+++++++.++ .|.. .+++..+++++||++|+|||++ .
T Consensus 17 vGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vptp~~~~~~~ 94 (425)
T PRK15182 17 VGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVPTPINTYKQP 94 (425)
T ss_pred chHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcCCCCCCCCCc
Confidence 89999999887 699999999999999998 4432 3445556789999999999998 3
Q ss_pred cchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCC--CCCceEEe--cccCCCHHHhhccc
Q 022170 59 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS--WENPVMLD--APVSGGVLAAEAGT 134 (301)
Q Consensus 59 ~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~--~pv~g~~~~a~~g~ 134 (301)
+ +..+....+++.+. ..+|++||++||+.|.+++++.+...+. ..|. ...+.... .|+.+|.......+
T Consensus 95 d-l~~v~~a~~~i~~~--l~~g~lVI~~STv~pgtt~~~~~~~l~~----~~g~~~~~~~~~~~~PE~v~~G~a~~~~~~ 167 (425)
T PRK15182 95 D-LTPLIKASETVGTV--LNRGDIVVYESTVYPGCTEEECVPILAR----MSGMTFNQDFYVGYSPERINPGDKKHRLTN 167 (425)
T ss_pred c-hHHHHHHHHHHHHh--cCCCCEEEEecCCCCcchHHHHHHHHHh----ccCCCcCCCeeEeeCCCcCCCCcccccccC
Confidence 3 56777665566654 3467899999999999999876554431 1111 11222333 44555555554455
Q ss_pred eE-EEecCCHHHHHHHHHHHHhcC-CCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 135 LT-FMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 135 l~-~~~gg~~~~~~~~~~ll~~~~-~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
+. ++.|++++..+.++++++.+. ..++++++++.|+++|+++|++.++++++++|+..+|++.|+|.++++++++.+
T Consensus 168 ~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~~~- 246 (425)
T PRK15182 168 IKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAGSK- 246 (425)
T ss_pred CCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCC-
Confidence 44 444557788899999999986 457889999999999999999999999999999999999999999999996544
Q ss_pred CCccccccCCCCCCcccCCCCCCCCCCC-cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022170 213 ARCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 276 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 276 (301)
|.... +.+| |...|+.||...+...+++.|.+++++++++++.+.
T Consensus 247 ---~~~~~----------------~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~ 292 (425)
T PRK15182 247 ---WNFLP----------------FRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDN 292 (425)
T ss_pred ---CCccc----------------CCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 21111 2234 667899999999999999999999999999887543
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=219.40 Aligned_cols=249 Identities=15% Similarity=0.153 Sum_probs=189.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC-CCHHHH---------------HhcCCEEEEecCCC-------
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-ETPFEV---------------AEASDVVITMLPSS------- 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s~~e~---------------~~~adiVi~~vp~~------- 57 (301)
||.+||.+|+++||+|++||+++++++.++....... ..+++. .++||+||+|||++
T Consensus 14 ~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~vptp~~~~~~~ 93 (415)
T PRK11064 14 IGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAVPTPFKGDHEP 93 (415)
T ss_pred hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEcCCCCCCCCCc
Confidence 8999999999999999999999999998764322211 122222 23799999999987
Q ss_pred --ccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhh----hccCCCCCceEEecc--cCCCHHH
Q 022170 58 --SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILK----EKKDSWENPVMLDAP--VSGGVLA 129 (301)
Q Consensus 58 --~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~p--v~g~~~~ 129 (301)
.. +.+++. ++.+. ..++++||++||+.|.+++++...+.+.+.. ...|....+.++++| +..|...
T Consensus 94 dl~~-v~~~~~---~i~~~--l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~ 167 (415)
T PRK11064 94 DLTY-VEAAAK---SIAPV--LKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVM 167 (415)
T ss_pred ChHH-HHHHHH---HHHHh--CCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChh
Confidence 23 555543 34443 2467899999999999999999877653110 000111246778999 6666666
Q ss_pred hhccceEEEecC-CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022170 130 AEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 208 (301)
Q Consensus 130 a~~g~l~~~~gg-~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 208 (301)
...+++..++|| +++.+++++++|+.++..++++++++.|+++|+++|++.+.++++++|+..+|++.|+|++++++++
T Consensus 168 ~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~ 247 (415)
T PRK11064 168 VELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINVWELIRLA 247 (415)
T ss_pred hhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 666777788999 9999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred hhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022170 209 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 276 (301)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 276 (301)
+..... ....| .+||...|+.||...+.. +.+.+++++++++++-+.
T Consensus 248 ~~~~ri----~~l~p--------------G~G~GG~ClpkD~~~L~~---~~~~~~~l~~~a~~~N~~ 294 (415)
T PRK11064 248 NRHPRV----NILQP--------------GPGVGGHCIAVDPWFIVA---QNPQQARLIRTAREVNDG 294 (415)
T ss_pred ccCCCc----ccCCC--------------CCCCCCccccccHHHHHH---hcCCccHHHHHHHHHHHH
Confidence 865421 11122 235667889999987744 556678889888776443
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=195.86 Aligned_cols=247 Identities=24% Similarity=0.352 Sum_probs=202.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHh---cCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE---ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~---~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||..|..+|.+.||+|++||+|++.++.+...|++.++|+.+.++ ...+|.++||.... +.+++.+..+.++
T Consensus 11 MG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~i-t~~vi~~la~~L~---- 85 (300)
T COG1023 11 MGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDI-TDAVIDDLAPLLS---- 85 (300)
T ss_pred hhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCc-hHHHHHHHHhhcC----
Confidence 899999999999999999999999999999999999999998864 68999999997755 8888887666663
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcC
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG 157 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~ 157 (301)
+|.+|||-.++....+.+..+.+.+. +++|+|+..+|+...++.|. .+|+|||++++++++|+|+.++
T Consensus 86 -~GDivIDGGNS~y~Ds~rr~~~l~~k----------gi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA 153 (300)
T COG1023 86 -AGDIVIDGGNSNYKDSLRRAKLLAEK----------GIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALA 153 (300)
T ss_pred -CCCEEEECCccchHHHHHHHHHHHhc----------CCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhC
Confidence 57899999999999999988888752 49999999999999999998 8999999999999999999987
Q ss_pred C---CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhcC-CCccccccCC----CCCCc
Q 022170 158 K---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL--GISASTLTKILNSSS-ARCWSSDSYN----PVPGV 227 (301)
Q Consensus 158 ~---~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~--G~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~ 227 (301)
. ...|+|+.|+++.+||++|-+.+.+++.++|.+.+.++. .+|.+++.++++.|+ .+||++.... .-+++
T Consensus 154 ~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L 233 (300)
T COG1023 154 PGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDL 233 (300)
T ss_pred cCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCH
Confidence 5 568999999999999999999999999999999999986 567899999999997 5788764221 11111
Q ss_pred c--cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHH-HHHHH
Q 022170 228 M--EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ-DIYAK 276 (301)
Q Consensus 228 ~--~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~-~~~~~ 276 (301)
- .+++. . -.+ =+.-++.+-+.|+|.|++..+. ..|.+
T Consensus 234 ~q~~g~v~-d-------SGE----GrWTv~~aldlgvpaPVia~al~~Rf~S 273 (300)
T COG1023 234 DQISGRVS-D-------SGE----GRWTVEEALDLGVPAPVIALALMMRFRS 273 (300)
T ss_pred HHhcCeec-c-------CCC----ceeehHHHHhcCCCchHHHHHHHHHHhc
Confidence 0 11100 0 001 1245667788899999887654 34443
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-28 Score=216.58 Aligned_cols=276 Identities=17% Similarity=0.176 Sum_probs=206.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------------CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
||+++|.+|+++||+|++|+|+++.++.+.+. ++..+.+++++++++|+||+|+|+. . +++++.
T Consensus 12 mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~-~-~~~v~~ 89 (325)
T PRK00094 12 WGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPSQ-A-LREVLK 89 (325)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCHH-H-HHHHHH
Confidence 79999999999999999999999999888875 3445678888889999999999964 4 888886
Q ss_pred CCCccccCCCCCCCeEEEEeC-CCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHH
Q 022170 67 GPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 145 (301)
Q Consensus 67 ~~~~~l~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~ 145 (301)
+....+ .+++++|+++ |+.|++.+++++.+.+.. +......++.+|.+.....+...++.++.+++.+.
T Consensus 90 ~l~~~~-----~~~~~vi~~~ngv~~~~~~~~~~~l~~~~-----~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~ 159 (325)
T PRK00094 90 QLKPLL-----PPDAPIVWATKGIEPGTGKLLSEVLEEEL-----PDLAPIAVLSGPSFAKEVARGLPTAVVIASTDEEL 159 (325)
T ss_pred HHHhhc-----CCCCEEEEEeecccCCCCCcHHHHHHHHc-----CCCCceEEEECccHHHHHHcCCCcEEEEEeCCHHH
Confidence 543332 3457888887 888877777777665421 10012467778887666555566777777889999
Q ss_pred HHHHHHHHHhcCCCeEeeCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022170 146 YQAAKPLFLSMGKNTIYCGG-----------------AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 208 (301)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~g~-----------------~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 208 (301)
+++++++|+..+.++++..+ .|.+..+|+.+|.+......+++|++.++++.|+|+++++++.
T Consensus 160 ~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~ 239 (325)
T PRK00094 160 AERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLGLA 239 (325)
T ss_pred HHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhccc
Confidence 99999999998876655433 2777889999999999999999999999999999999999987
Q ss_pred hhc----CCCccccccCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCC
Q 022170 209 NSS----SARCWSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHD 283 (301)
Q Consensus 209 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g 283 (301)
+.+ ++.++.++++.++..+..+....+.. ..+ ...++.||++.++++++++|+++|+.++++++| ++
T Consensus 240 ~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~-------~~ 311 (325)
T PRK00094 240 GLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEAVYAVL-------YE 311 (325)
T ss_pred HhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------cC
Confidence 665 33444444433222221110000000 112 567889999999999999999999999999998 46
Q ss_pred CCchHHHHHHHhC
Q 022170 284 SKDFSCVFQHYYG 296 (301)
Q Consensus 284 ~~d~~~~~~~~~~ 296 (301)
+.+...+++.+.+
T Consensus 312 ~~~~~~~~~~~~~ 324 (325)
T PRK00094 312 GKDPREAVEDLMG 324 (325)
T ss_pred CCCHHHHHHHHhc
Confidence 7788888777654
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=209.65 Aligned_cols=233 Identities=16% Similarity=0.158 Sum_probs=179.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh----------------CCCCCC--CCHHHHHhcCCEEEEecCCC-----
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD----------------MGVPTK--ETPFEVAEASDVVITMLPSS----- 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~----------------~g~~~~--~s~~e~~~~adiVi~~vp~~----- 57 (301)
||.++|..|+. ||+|++||+++++++.+++ .+...+ .++.+++.++|+||+|||++
T Consensus 11 vGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~ 89 (388)
T PRK15057 11 VGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIATPTDYDPKT 89 (388)
T ss_pred HHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEeCCCCCccCC
Confidence 79999987775 9999999999999998876 233333 34678889999999999987
Q ss_pred -----ccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhc
Q 022170 58 -----SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 132 (301)
Q Consensus 58 -----~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~ 132 (301)
.. +++++.+ +.+ ..+++++|++||++|.+++++.+.+.+. ++.| .|..+.+
T Consensus 90 ~~~dl~~-v~~v~~~---i~~---~~~g~lVV~~STv~pgtt~~l~~~~~~~----------~v~~-------~PE~l~~ 145 (388)
T PRK15057 90 NYFNTSS-VESVIKD---VVE---INPYAVMVIKSTVPVGFTAAMHKKYRTE----------NIIF-------SPEFLRE 145 (388)
T ss_pred CCcChHH-HHHHHHH---HHh---cCCCCEEEEeeecCCchHHHHHHHhhcC----------cEEE-------CcccccC
Confidence 23 5666543 332 1357899999999999999999876531 1333 4445556
Q ss_pred cce--------EEEecCCHHHHHHHHHHHHh--cCCCeE-eeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 022170 133 GTL--------TFMVGGSEDAYQAAKPLFLS--MGKNTI-YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 201 (301)
Q Consensus 133 g~l--------~~~~gg~~~~~~~~~~ll~~--~~~~~~-~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~ 201 (301)
|++ .+++|++++..+++.++|.. ++..+. ++++.+.|+++|+++|++.++++++++|+..+|++.|+|.
T Consensus 146 G~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~ 225 (388)
T PRK15057 146 GKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNT 225 (388)
T ss_pred CcccccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence 776 89999988888889998854 555444 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022170 202 STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 276 (301)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 276 (301)
+++.++++..+.-+. ...+| .+||...|+.||...+...+ .++++++++++.++-+.
T Consensus 226 ~eV~~a~~~d~ri~~--~~l~p--------------G~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~ 282 (388)
T PRK15057 226 RQIIEGVCLDPRIGN--HYNNP--------------SFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRT 282 (388)
T ss_pred HHHHHHhcCCCCCCC--ccCCC--------------CCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHH
Confidence 999999987642111 01112 23677889999999987655 56788999998876443
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=201.64 Aligned_cols=276 Identities=15% Similarity=0.179 Sum_probs=215.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------------CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
||++||..|+++||+|.+|.|+++.++++... ++.+++++.++++++|+|++++|. +. +++++.
T Consensus 12 wGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs-~~-~r~v~~ 89 (329)
T COG0240 12 WGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS-QA-LREVLR 89 (329)
T ss_pred HHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh-HH-HHHHHH
Confidence 79999999999999999999999999988774 256778999999999999999995 55 999998
Q ss_pred CCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHH
Q 022170 67 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAY 146 (301)
Q Consensus 67 ~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~ 146 (301)
+.++.+. ++..++.-+.++.|++.+.+++.+.+. .+. ..+.++++|.+..+......+.+.+.+-|++..
T Consensus 90 ~l~~~l~----~~~~iv~~sKGie~~t~~l~seii~e~----l~~--~~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a 159 (329)
T COG0240 90 QLKPLLL----KDAIIVSATKGLEPETGRLLSEIIEEE----LPD--NPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAA 159 (329)
T ss_pred HHhhhcc----CCCeEEEEeccccCCCcchHHHHHHHH----cCC--CeEEEEECccHHHHHhcCCCcEEEEecCCHHHH
Confidence 7654442 232344455789999999999988763 111 127899999999998888888777777799999
Q ss_pred HHHHHHHHhcCCCeEeeCCc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022170 147 QAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 209 (301)
Q Consensus 147 ~~~~~ll~~~~~~~~~~g~~-----------------g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~ 209 (301)
++++.+|..-..+++...++ |....+.+.+|+..+.++++++|+.+|+.++|.++++++.+-+
T Consensus 160 ~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gLsG 239 (329)
T COG0240 160 EKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGLSG 239 (329)
T ss_pred HHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhccccc
Confidence 99999988755554443331 4445567889999999999999999999999999999999988
Q ss_pred hc----CCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCC
Q 022170 210 SS----SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 285 (301)
Q Consensus 210 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~ 285 (301)
.| +|+|..++|+..+..+.++..+.........+.++.+..+.++++++++++++|+++++|+++. +..
T Consensus 240 lGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~-------~~~ 312 (329)
T COG0240 240 LGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLY-------EGL 312 (329)
T ss_pred ccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-------CCC
Confidence 88 4677777877655444343222222223456788999999999999999999999999999885 445
Q ss_pred chHHHHHHHh
Q 022170 286 DFSCVFQHYY 295 (301)
Q Consensus 286 d~~~~~~~~~ 295 (301)
+....++.+.
T Consensus 313 ~~~~~~~~L~ 322 (329)
T COG0240 313 DPKEAIEELM 322 (329)
T ss_pred CHHHHHHHHh
Confidence 5556666553
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-27 Score=210.41 Aligned_cols=253 Identities=17% Similarity=0.185 Sum_probs=188.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||++||.+|.++||+|++|+|++. .++.++++++|+||+|+|++ . +++++.+..... ..++
T Consensus 15 ~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~~-~-~~~v~~~l~~~~----~~~~ 75 (308)
T PRK14619 15 WGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSMK-G-VRPVAEQVQALN----LPPE 75 (308)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECChH-H-HHHHHHHHHHhc----CCCC
Confidence 799999999999999999999864 57888999999999999975 5 888886543211 1356
Q ss_pred eEEEEeCC-CCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCC
Q 022170 81 QLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN 159 (301)
Q Consensus 81 ~ivid~st-~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~ 159 (301)
+++|++|+ +.|.+.+.+++.+... .. ...+..+.+|....+.....++.++++|++++.+++++++|+..+.+
T Consensus 76 ~ivi~~s~gi~~~~~~~~s~~~~~~----~~--~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~ 149 (308)
T PRK14619 76 TIIVTATKGLDPETTRTPSQIWQAA----FP--NHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFR 149 (308)
T ss_pred cEEEEeCCcccCCCCcCHHHHHHHH----cC--CCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEE
Confidence 78999986 8888777777766431 00 00122223333222222333578899999999999999999999888
Q ss_pred eEeeCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCC
Q 022170 160 TIYCGG-----------------AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYN 222 (301)
Q Consensus 160 ~~~~g~-----------------~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 222 (301)
+++.++ .|.+..+|+.+|...+..+.++.|++.+++++|+++++++++. +.+.++...
T Consensus 150 ~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~--g~gd~~~t~--- 224 (308)
T PRK14619 150 VYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGLS--GLGDLLATC--- 224 (308)
T ss_pred EEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccccccc--chhhhheee---
Confidence 875555 2334455699999999999999999999999999999999853 333333211
Q ss_pred CCCCcccCCCCCCCCCCCcchhhH----------------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCc
Q 022170 223 PVPGVMEGVPASRNYGGGFASKLM----------------AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 286 (301)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d 286 (301)
..+.+|+|..+|.+..+ .||++.+++++++.|+++|++++++++| +++.+
T Consensus 225 -------~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~-------~~~~~ 290 (308)
T PRK14619 225 -------TSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLL-------QGEIT 290 (308)
T ss_pred -------cCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------cCCCC
Confidence 02345677666666665 9999999999999999999999999999 46777
Q ss_pred hHHHHHHHhCC
Q 022170 287 FSCVFQHYYGG 297 (301)
Q Consensus 287 ~~~~~~~~~~~ 297 (301)
...+++.+..+
T Consensus 291 ~~~~~~~l~~~ 301 (308)
T PRK14619 291 PQQALEELMER 301 (308)
T ss_pred HHHHHHHHHcC
Confidence 77777777653
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-24 Score=188.07 Aligned_cols=255 Identities=13% Similarity=0.139 Sum_probs=194.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCCC-------------CCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMGV-------------PTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l-----------~~~g~-------------~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||++||.+|+++||+|++|||+++..+.. .+.|. ..+.+++++++++|+|+.|+|+
T Consensus 13 mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe 92 (308)
T PRK06129 13 IGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVADADYVQESAPE 92 (308)
T ss_pred HHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCCCCEEEECCcC
Confidence 79999999999999999999999877653 33442 4677898999999999999998
Q ss_pred CccchhhhhcC-CCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccce
Q 022170 57 SSHQVLDVYNG-PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 135 (301)
Q Consensus 57 ~~~~~~~v~~~-~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l 135 (301)
+.+ ++..+.+ ...+. ++.+++. ||+++....++++.+.. . +..+.++|+.+.... .+
T Consensus 93 ~~~-~k~~~~~~l~~~~------~~~~ii~-ssts~~~~~~la~~~~~------~----~~~~~~hp~~p~~~~----~l 150 (308)
T PRK06129 93 NLE-LKRALFAELDALA------PPHAILA-SSTSALLASAFTEHLAG------R----ERCLVAHPINPPYLI----PV 150 (308)
T ss_pred CHH-HHHHHHHHHHHhC------CCcceEE-EeCCCCCHHHHHHhcCC------c----ccEEEEecCCCcccC----ce
Confidence 765 5555433 22222 2345555 44445556677776643 2 257889998753211 25
Q ss_pred EEEec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 136 TFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 136 ~~~~g---g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
..+++ ++++.++++.++++.+|++++++++.+.+. ++||++ .++++|++.++++.|+|++++.+++..+.
T Consensus 151 veiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl~----~a~~~EA~~l~~~g~~~~~~id~~~~~~~ 223 (308)
T PRK06129 151 VEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF---VLNRLQ----GALLREAFRLVADGVASVDDIDAVIRDGL 223 (308)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 66776 789999999999999999999999767776 455543 37889999999999999999999999988
Q ss_pred CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHH
Q 022170 213 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 292 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~ 292 (301)
+.+|.+ .+| ....+.|.++|......||..++.+++++.+.++|+++...+......+.-++..++..+.+
T Consensus 224 g~~~~~--~gp-------~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (308)
T PRK06129 224 GLRWSF--MGP-------FETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQA 294 (308)
T ss_pred CCCccC--cCH-------HHHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 777654 222 12345677788899999999999999999999999999888877777777777787777655
Q ss_pred H
Q 022170 293 H 293 (301)
Q Consensus 293 ~ 293 (301)
+
T Consensus 295 ~ 295 (308)
T PRK06129 295 W 295 (308)
T ss_pred H
Confidence 3
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-23 Score=181.94 Aligned_cols=248 Identities=15% Similarity=0.168 Sum_probs=193.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-------------------C-CCCCCCHHHHHhcCCEEEEecCCCcc-
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVVITMLPSSSH- 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-------------------g-~~~~~s~~e~~~~adiVi~~vp~~~~- 59 (301)
.|...+.+|++.||+|+++|.+++|++.+++. | ..++++.+++++++|++|+|||+|..
T Consensus 11 VGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~fIavgTP~~~ 90 (414)
T COG1004 11 VGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVVFIAVGTPPDE 90 (414)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEEEEEcCCCCCC
Confidence 37888999999999999999999999888763 2 56788999999999999999999853
Q ss_pred -------chhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhc
Q 022170 60 -------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 132 (301)
Q Consensus 60 -------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~ 132 (301)
.+.+++.. +.+. ..+.+++|.-||+.|+|++++.+.+.+.. .+ .++..+..|.|-.+..|..
T Consensus 91 dg~aDl~~V~ava~~---i~~~--~~~~~vvV~KSTVPvGt~~~v~~~i~~~~----~~--~~f~v~~NPEFLREG~Av~ 159 (414)
T COG1004 91 DGSADLSYVEAVAKD---IGEI--LDGKAVVVIKSTVPVGTTEEVRAKIREEN----SG--KDFEVASNPEFLREGSAVY 159 (414)
T ss_pred CCCccHHHHHHHHHH---HHhh--cCCCeEEEEcCCCCCCchHHHHHHHHhhc----cc--CCceEecChHHhcCcchhh
Confidence 24444433 3332 22348999999999999999998876521 11 1467888888877766665
Q ss_pred cce---EEEecCC-HHHHHHHHHHHHhc---CCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 022170 133 GTL---TFMVGGS-EDAYQAAKPLFLSM---GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 205 (301)
Q Consensus 133 g~l---~~~~gg~-~~~~~~~~~ll~~~---~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~ 205 (301)
.++ .+++|.+ +++.+.++++++.+ ..+++ .-+...|+++|+.+|++.+..+.+++|+..+|++.|+|.+++.
T Consensus 160 D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l-~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V~ 238 (414)
T COG1004 160 DFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPIL-FTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQVA 238 (414)
T ss_pred hccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEE-EecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 544 4888884 44678888888775 33444 4456899999999999999999999999999999999999999
Q ss_pred HHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022170 206 KILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 276 (301)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 276 (301)
+.++...--++. ..++ ..||...|+.||.+.++..++++|.+.++++++.++-+.
T Consensus 239 ~gIGlD~RIG~~--fl~a--------------G~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~ 293 (414)
T COG1004 239 EGIGLDPRIGNH--FLNA--------------GFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNER 293 (414)
T ss_pred HHcCCCchhhHh--hCCC--------------CCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 999876411110 1111 236788999999999999999999999999999876543
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=181.43 Aligned_cols=192 Identities=18% Similarity=0.221 Sum_probs=153.6
Q ss_pred cHHHHHHHHhCCCeEEEEcCChh-----hHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
|++||.+|+++||+|++|||+++ +.+.+...|+..++++.++++++|+||+|+|++.. +++++.+ +.+.
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~-v~~Vl~~---L~~~-- 105 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKK-TVEIAKN---ILPH-- 105 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHH-HHHHHHH---HHhh--
Confidence 78999999999999999999987 45567778988888999999999999999998775 7888864 3333
Q ss_pred CCCCeEEEEeCCCCHHHH-HHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHHhhccceEEEecC--------CHHHH
Q 022170 77 SVRPQLLIDSSTIDPQTS-RNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGG--------SEDAY 146 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~-~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~a~~g~l~~~~gg--------~~~~~ 146 (301)
..++++|||+||++|... +.+.+.+... ....++.+. ++++.+++ .+.+.+++|| +++.+
T Consensus 106 L~~g~IVId~ST~~~~~~s~~l~~~l~~~------~~~~gi~~~~p~~v~Gae----~g~l~Vm~gg~t~~~~~~~~e~~ 175 (342)
T PRK12557 106 LPENAVICNTCTVSPVVLYYSLEGELRTK------RKDVGISSMHPAAVPGTP----QHGHYVIAGKTTNGTELATEEQI 175 (342)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHhccc------ccccCeeecCCccccccc----cchheEEeCCCcccccCCCHHHH
Confidence 245689999999999987 6676666421 001134444 44455554 3444667665 89999
Q ss_pred HHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 022170 147 QAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 210 (301)
Q Consensus 147 ~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~ 210 (301)
++++++|+.++.++++++ .|.++.+|+++|++.+.+.++++|++.++++.|.++.++++-+..
T Consensus 176 e~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~ 238 (342)
T PRK12557 176 EKCVELAESIGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQIL 238 (342)
T ss_pred HHHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999887776 599999999999999999999999999999999999987766543
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-23 Score=160.14 Aligned_cols=122 Identities=34% Similarity=0.576 Sum_probs=109.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 022170 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 246 (301)
Q Consensus 167 g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (301)
|+|+.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+++.||.++.+.| . .+.+++|+++|+++..
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~--~----~~~~~~~~~~f~l~~~ 74 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAP--R----MILNGDFDPGFSLDLA 74 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHH--H----HHHTTTTCSSSBHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhh--h----hhhcccCCccchhHhh
Confidence 789999999999999999999999999999999999999999999999888765522 1 2457899999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHH
Q 022170 247 AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294 (301)
Q Consensus 247 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 294 (301)
.||++++.+++++.|+|+|+++.+.++|+.+.++|+|+.|+++++++|
T Consensus 75 ~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 75 RKDLRLALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999999999986
|
... |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=175.72 Aligned_cols=246 Identities=15% Similarity=0.131 Sum_probs=186.2
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhHHHHHhCC-------------------CCCCCCHHHHHhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDMG-------------------VPTKETPFEVAEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~g-------------------~~~~~s~~e~~~~adiVi~~vp~~~~ 59 (301)
+|.++|..|+++| |+|++||+++++++.+++.+ ..++++..+++++||++|+|||+|..
T Consensus 12 vGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~advi~I~V~TP~~ 91 (473)
T PLN02353 12 VGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADIVFVSVNTPTK 91 (473)
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCEEEEEeCCCCC
Confidence 6899999999884 78999999999999876532 33456677888999999999987752
Q ss_pred -------------chhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCC
Q 022170 60 -------------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG 126 (301)
Q Consensus 60 -------------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~ 126 (301)
.+.+++.. +.+. ..++++||..||+.|.+++++.+.+.+. ..| .++++..+|.+-.
T Consensus 92 ~~g~~~~~~~Dls~v~~a~~~---i~~~--l~~~~lVv~~STvp~Gtt~~~~~~l~~~----~~g--~~f~v~~~PErl~ 160 (473)
T PLN02353 92 TRGLGAGKAADLTYWESAARM---IADV--SKSDKIVVEKSTVPVKTAEAIEKILTHN----SKG--INFQILSNPEFLA 160 (473)
T ss_pred CCCCcCCCCCcHHHHHHHHHH---HHhh--CCCCcEEEEeCCCCCChHHHHHHHHHhh----CCC--CCeEEEECCCccC
Confidence 13444433 2222 2457899999999999999998887652 112 2467888998876
Q ss_pred HHHhhccc---eEEEecCC-----HHHHHHHHHHHHhcCC-CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022170 127 VLAAEAGT---LTFMVGGS-----EDAYQAAKPLFLSMGK-NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 197 (301)
Q Consensus 127 ~~~a~~g~---l~~~~gg~-----~~~~~~~~~ll~~~~~-~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~ 197 (301)
|..+.... -.+++||. +++.++++.+++.+.. .++.+.++..|++.|++.|.+.++.+++++|+..+|++.
T Consensus 161 ~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~ 240 (473)
T PLN02353 161 EGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (473)
T ss_pred CCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65554432 24667883 3357888899998853 456677889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCC--chHHHHHHHH
Q 022170 198 GISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD--CPLTSQAQDI 273 (301)
Q Consensus 198 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~ 273 (301)
|+|..++.++++..+-.++. ...| .+||...|+.||...+...+++.|.+ +++++++.++
T Consensus 241 giD~~eV~~~~~~d~rig~~--~l~P--------------G~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~i 302 (473)
T PLN02353 241 GADVSQVSHAVGKDSRIGPK--FLNA--------------SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKM 302 (473)
T ss_pred CCCHHHHHHHhCCCCcCCCC--CCCC--------------CCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 99999999998876411110 1112 13566789999999999999999988 7888777654
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-21 Score=169.13 Aligned_cols=216 Identities=19% Similarity=0.272 Sum_probs=160.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-------------------C-CCCCCCHHHHHhcCCEEEEecCCCcc-
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVVITMLPSSSH- 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-------------------g-~~~~~s~~e~~~~adiVi~~vp~~~~- 59 (301)
+|.++|..++++|++|+++|.|+.+++.++.. | .++++++.++ +.||++++|||++..
T Consensus 20 VGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~dv~iI~VPTPl~~ 98 (436)
T COG0677 20 VGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECDVFIICVPTPLKK 98 (436)
T ss_pred ccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCCEEEEEecCCcCC
Confidence 69999999999999999999999999888653 2 4555566554 489999999999742
Q ss_pred ----chhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCC--CCceEEeccc--CCCHHHhh
Q 022170 60 ----QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW--ENPVMLDAPV--SGGVLAAE 131 (301)
Q Consensus 60 ----~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~pv--~g~~~~a~ 131 (301)
.+..|....+.+.+. ..+|.+||--||+.|+|++++...+.+. ..|.. .++..-.+|. ..|...-+
T Consensus 99 ~~~pDls~v~~aa~sIa~~--L~kG~LVIlEST~~PGTTe~v~~plle~----~sgL~~~~Df~laysPERv~PG~~~~e 172 (436)
T COG0677 99 YREPDLSYVESAARSIAPV--LKKGDLVILESTTPPGTTEEVVKPLLEE----RSGLKFGEDFYLAYSPERVLPGNVLKE 172 (436)
T ss_pred CCCCChHHHHHHHHHHHHh--cCCCCEEEEecCCCCCcHHHHHHHHHhh----cCCCcccceeeEeeCccccCCCchhhh
Confidence 022222222233333 2478899999999999999999988762 12211 2454555663 33333222
Q ss_pred ccceEEEecC-CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 022170 132 AGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 210 (301)
Q Consensus 132 ~g~l~~~~gg-~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~ 210 (301)
--+..=++|| +++..+.++.+++.+-..++.+.+.-.|++.|+..|++..++++++||...+|+++|+|.++++++.+.
T Consensus 173 l~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwevIeaAnt 252 (436)
T COG0677 173 LVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWEVIEAANT 252 (436)
T ss_pred hhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHHHHHHhcc
Confidence 2233445666 788889999999999877888888999999999999999999999999999999999999999999987
Q ss_pred cCCCccccccCCCCCCc
Q 022170 211 SSARCWSSDSYNPVPGV 227 (301)
Q Consensus 211 ~~~~~~~~~~~~~~~~~ 227 (301)
.+- ...+.|+|++
T Consensus 253 ~P~----~~~~~PGpGv 265 (436)
T COG0677 253 KPR----VNIFYPGPGV 265 (436)
T ss_pred CCc----eeecCCCCCC
Confidence 642 2234555554
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=169.17 Aligned_cols=253 Identities=21% Similarity=0.305 Sum_probs=189.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----CCCCCCCHHHHH---hcCCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVA---EASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~e~~---~~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||+.||.|..++||+|.+|||++++.+.+.+. .+..+.|++|.+ +...-|+++|..... +..++.++.+++
T Consensus 14 MG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~-VD~~I~~L~p~L 92 (473)
T COG0362 14 MGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTP-VDAVIEQLLPLL 92 (473)
T ss_pred hhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCc-HHHHHHHHHhhc
Confidence 89999999999999999999999999998775 256677888875 568899999987665 788887765555
Q ss_pred cCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHH
Q 022170 73 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 152 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 152 (301)
.+|.++||-.+.....+.+.-+.+.+ . ++.|+...|+||+..+..|. .+|.||++++++.++|+
T Consensus 93 -----e~gDIiIDGGNs~y~DT~RR~~eL~~------~----Gi~FvG~GVSGGEeGA~~GP-SiMpGG~~eay~~v~pi 156 (473)
T COG0362 93 -----EKGDIIIDGGNSHYKDTIRRNKELSE------K----GILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPI 156 (473)
T ss_pred -----CCCCEEEeCCCcCCchHHHHHHHHHh------c----CCeEEeccccccccccccCC-CcCCCCCHHHHHHHHHH
Confidence 36789999988766655555555554 2 38999999999999999998 89999999999999999
Q ss_pred HHhcC------CCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---hhcCCCccccccCC
Q 022170 153 FLSMG------KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKIL---NSSSARCWSSDSYN 222 (301)
Q Consensus 153 l~~~~------~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~-~G~~~~~~~~~~---~~~~~~~~~~~~~~ 222 (301)
|..++ ..+.++|+-|.+|.+|+++|-+.+.-+++++|+..+.+. +|++.+++.+++ +.+...|.+.+...
T Consensus 157 l~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~ 236 (473)
T COG0362 157 LTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITA 236 (473)
T ss_pred HHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHH
Confidence 99985 255789999999999999999999999999999999998 799988766664 45544444433211
Q ss_pred CCCCcccCCCCCCCCCCC-cchhhHHHHH------HHHHHHHHHcCCCchHHHHH-HHHHHHH
Q 022170 223 PVPGVMEGVPASRNYGGG-FASKLMAKDL------NLALASAKEVGVDCPLTSQA-QDIYAKL 277 (301)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~-~~~~~~~kd~------~~~~~~a~~~g~~~p~~~~~-~~~~~~a 277 (301)
. ++. ..|-+.+ .-++..+... +....-|.+.|+|++++..+ ...+-+.
T Consensus 237 ~---IL~----~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs 292 (473)
T COG0362 237 D---ILR----KKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSS 292 (473)
T ss_pred H---HHh----hcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 1 000 0111112 1122222111 24556678899999877664 3444443
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-21 Score=173.96 Aligned_cols=275 Identities=11% Similarity=0.031 Sum_probs=199.2
Q ss_pred CcHHHHHHHHhCC-------CeEEEEcCChh-----hHHHHHhCC--------------CCCCCCHHHHHhcCCEEEEec
Q 022170 1 MGFRMASNLMKAG-------YKMAVHDVNCN-----VMKMFSDMG--------------VPTKETPFEVAEASDVVITML 54 (301)
Q Consensus 1 mG~~lA~~L~~~G-------~~V~~~dr~~~-----~~~~l~~~g--------------~~~~~s~~e~~~~adiVi~~v 54 (301)
||++||..|+++| |+|.+|.|+++ .++.+++.+ +.+++++.++++++|+|+++|
T Consensus 22 wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav~~aDiIvlAV 101 (365)
T PTZ00345 22 WGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAVEDADLLIFVI 101 (365)
T ss_pred HHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHHhcCCEEEEEc
Confidence 7999999999998 89999999986 366776532 445678889999999999999
Q ss_pred CCCccchhhhhcCCCc--cccCCCCCCCeEEE-EeCCCCHHHH--HHHHHHHhhchhhhccCCCCCceEEecccCCCHHH
Q 022170 55 PSSSHQVLDVYNGPNG--LLQGGNSVRPQLLI-DSSTIDPQTS--RNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLA 129 (301)
Q Consensus 55 p~~~~~~~~v~~~~~~--~l~~~~~~~~~ivi-d~st~~p~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~ 129 (301)
| ++. +++++.+..+ .+. +++++| -+.++.+++. +.+++.+.+. . + ..+.++.+|.+..+..
T Consensus 102 P-sq~-l~~vl~~l~~~~~l~-----~~~~iIS~aKGIe~~t~~~~~~sevi~e~----l-~--~~~~~LsGPs~A~Eva 167 (365)
T PTZ00345 102 P-HQF-LESVLSQIKENNNLK-----KHARAISLTKGIIVENGKPVLCSDVIEEE----L-G--IPCCALSGANVANDVA 167 (365)
T ss_pred C-hHH-HHHHHHHhccccccC-----CCCEEEEEeCCcccCCCCcccHHHHHHHH----h-C--CCeEEEECCCHHHHHH
Confidence 9 565 9999987765 332 333444 5567776654 5566666542 1 1 1367899999998888
Q ss_pred hhccceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCc-----------------chHHHHHHHHHHHHHHHHHHHHHHHH
Q 022170 130 AEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSEALT 192 (301)
Q Consensus 130 a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~~-----------------g~a~~~k~~~N~~~~~~~~~~~E~~~ 192 (301)
....+..++++-|++..+.++.+|+.-..+++...++ |.+..+++..|+..+.+++++.|+.+
T Consensus 168 ~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~~ 247 (365)
T PTZ00345 168 REEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKL 247 (365)
T ss_pred cCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 8888877777889999999999998655555443331 33444557799999999999999999
Q ss_pred HHHHcC--CCHHHHHHHHhhcC--CCccccccCCCCCCcccCC---CCCCCCCC--CcchhhHHHHHHHHHHHHHHcCC-
Q 022170 193 LGQSLG--ISASTLTKILNSSS--ARCWSSDSYNPVPGVMEGV---PASRNYGG--GFASKLMAKDLNLALASAKEVGV- 262 (301)
Q Consensus 193 l~~~~G--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~- 262 (301)
|++++| .++++++++.+.|+ .++..++|+..+..+.++. .++..... .....++...++.+.++++++++
T Consensus 248 l~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~ 327 (365)
T PTZ00345 248 FGKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDLK 327 (365)
T ss_pred HHHHhCCCCCccchhccchHhHhhhcccCCCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHcCCC
Confidence 999997 49999999988884 2233366665443333221 11100000 02456788899999999999999
Q ss_pred -CchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 263 -DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 263 -~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
++|+++++++++. ++.+...+++.+..
T Consensus 328 ~~~Pi~~~vy~il~-------~~~~~~~~~~~l~~ 355 (365)
T PTZ00345 328 KEFPLFTVTYKIAF-------EGADPSSLIDVLST 355 (365)
T ss_pred CCCCHHHHHHHHHh-------CCCCHHHHHHHHHc
Confidence 8999999999883 55566666666654
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-21 Score=173.88 Aligned_cols=262 Identities=12% Similarity=0.065 Sum_probs=191.8
Q ss_pred CcHHHHHHHHhCC--------CeEEEEcC-----ChhhHHHHHhC--------C------CCCCCCHHHHHhcCCEEEEe
Q 022170 1 MGFRMASNLMKAG--------YKMAVHDV-----NCNVMKMFSDM--------G------VPTKETPFEVAEASDVVITM 53 (301)
Q Consensus 1 mG~~lA~~L~~~G--------~~V~~~dr-----~~~~~~~l~~~--------g------~~~~~s~~e~~~~adiVi~~ 53 (301)
||++||..|+++| |+|++|.| +++..+.+++. | ++++++++++++++|+||++
T Consensus 10 wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal~~ADiIIlA 89 (342)
T TIGR03376 10 WGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAAKGADILVFV 89 (342)
T ss_pred HHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHHhcCCEEEEE
Confidence 7999999999999 99999998 55555555542 1 33557889999999999999
Q ss_pred cCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHH--HHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhh
Q 022170 54 LPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ--TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE 131 (301)
Q Consensus 54 vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~ 131 (301)
+|+ +. +++++....+.+. .+..++.-+.++.++ +.+.+++.+.+. . + ..+.++.+|.+..+....
T Consensus 90 VPs-~~-i~~vl~~l~~~l~----~~~~iVs~tKGie~~~~~~~~~se~i~e~----l-~--~~~~~lsGP~~A~Eva~~ 156 (342)
T TIGR03376 90 IPH-QF-LEGICKQLKGHVK----PNARAISCIKGLEVSKDGVKLLSDIIEEE----L-G--IPCGVLSGANLANEVAKE 156 (342)
T ss_pred CCh-HH-HHHHHHHHHhhcC----CCCEEEEEeCCcccCCCcCccHHHHHHHH----h-C--CCeEEeeCcchHHHHHcC
Confidence 995 44 8999887665552 222355555788888 778888877652 1 1 236789999999888888
Q ss_pred ccceEEEecCC----HHHHHHHHHHHHhcCCCeEeeCC-c----------------chHHHHHHHHHHHHHHHHHHHHHH
Q 022170 132 AGTLTFMVGGS----EDAYQAAKPLFLSMGKNTIYCGG-A----------------GNGAAAKICNNLTMAVSMLGVSEA 190 (301)
Q Consensus 132 ~g~l~~~~gg~----~~~~~~~~~ll~~~~~~~~~~g~-~----------------g~a~~~k~~~N~~~~~~~~~~~E~ 190 (301)
..+.+++.+.+ .+..+.++.+|+.-..+++...+ . |....+++..|+..+.+++++.|+
T Consensus 157 ~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em 236 (342)
T TIGR03376 157 KFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEM 236 (342)
T ss_pred CCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 88877777778 78888899998764444443333 1 333445577999999999999999
Q ss_pred HHHHHHcCCCHH--HHHHHHhhcC--CCccccccCCCCCCccc-CCCCCCCCCC--CcchhhHHHHHHHHHHHHHHcCCC
Q 022170 191 LTLGQSLGISAS--TLTKILNSSS--ARCWSSDSYNPVPGVME-GVPASRNYGG--GFASKLMAKDLNLALASAKEVGVD 263 (301)
Q Consensus 191 ~~l~~~~G~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~ 263 (301)
.++++++|.+++ +++++.+.|+ .++..++++..+..+.+ |..++...+. .....++...++.+.+++++.+++
T Consensus 237 ~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i~ 316 (342)
T TIGR03376 237 IKFARMFFPTGEVTFTFESCGVADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNKD 316 (342)
T ss_pred HHHHHHhCCCCCCCcccccchhhhhhheeecCccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCCC
Confidence 999999999888 9999888884 23333666655444444 3222111111 224566788899999999999999
Q ss_pred --chHHHHHHHHHH
Q 022170 264 --CPLTSQAQDIYA 275 (301)
Q Consensus 264 --~p~~~~~~~~~~ 275 (301)
+|+++++++++.
T Consensus 317 ~~~Pi~~~vy~il~ 330 (342)
T TIGR03376 317 DEFPLFEAVYQILY 330 (342)
T ss_pred cCCCHHHHHHHHHh
Confidence 999999999884
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-20 Score=165.72 Aligned_cols=276 Identities=14% Similarity=0.131 Sum_probs=195.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC---------------CCCCCCHHHHHhcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---------------VPTKETPFEVAEASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g---------------~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~ 65 (301)
||+++|..|+++| +|++|.|+++..+.+++.+ +..++++.++++++|+||+|+|. .. +++++
T Consensus 18 ~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavps-~~-~~~vl 94 (341)
T PRK12439 18 WGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVPS-HG-FRGVL 94 (341)
T ss_pred HHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeCH-HH-HHHHH
Confidence 7999999999999 6889999999998887642 12356777888999999999994 55 88988
Q ss_pred cCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHH
Q 022170 66 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 145 (301)
Q Consensus 66 ~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~ 145 (301)
.+..+.+. +...++.-..++.+.+.+.+.+.+.+. ..+ ....++.+|-+..+......+..++.+.+++.
T Consensus 95 ~~i~~~l~----~~~~vIsl~kGi~~~t~~~~se~i~~~----l~~--~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~ 164 (341)
T PRK12439 95 TELAKELR----PWVPVVSLVKGLEQGTNMRMSQIIEEV----LPG--HPAGILAGPNIAREVAEGYAAAAVLAMPDQHL 164 (341)
T ss_pred HHHHhhcC----CCCEEEEEEeCCcCCCCCcHHHHHHHH----cCC--CCeEEEECCCHHHHHHcCCCeEEEEEeCCHHH
Confidence 77655542 222344555677776666666665431 011 12456777766555444444444454557777
Q ss_pred HHHHHHHHHhcCCCeEeeCCc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022170 146 YQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 208 (301)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~g~~-----------------g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 208 (301)
.+.++.+|+.-+.+++...++ |....+++..|+..+.+++++.|+..++++.|.++++++++.
T Consensus 165 ~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~ 244 (341)
T PRK12439 165 ATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETFAGLA 244 (341)
T ss_pred HHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccccccc
Confidence 888999998777666544443 333445677899988999999999999999999999999998
Q ss_pred hhcC----CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCC
Q 022170 209 NSSS----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 284 (301)
Q Consensus 209 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~ 284 (301)
+.|+ +.|..++++..+..+.+|...+...+......++...++.++++++++++++|+++++++++ +++
T Consensus 245 G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il-------~~~ 317 (341)
T PRK12439 245 GMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVI-------NHG 317 (341)
T ss_pred hhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hCC
Confidence 8884 55555676655544444332222111112357788999999999999999999999999988 466
Q ss_pred CchHHHHHHHhC
Q 022170 285 KDFSCVFQHYYG 296 (301)
Q Consensus 285 ~d~~~~~~~~~~ 296 (301)
.|...+++.+..
T Consensus 318 ~~~~~~~~~l~~ 329 (341)
T PRK12439 318 STVEQAYRGLIA 329 (341)
T ss_pred CCHHHHHHHHhc
Confidence 677777776654
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-19 Score=165.48 Aligned_cols=251 Identities=15% Similarity=0.132 Sum_probs=170.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-------------------CC-CCCCCCHHHHHhcCCEEEEecCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-------------------MG-VPTKETPFEVAEASDVVITMLPSSSHQ 60 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-------------------~g-~~~~~s~~e~~~~adiVi~~vp~~~~~ 60 (301)
||.+||.+|+++||+|++||+++++.+.+.+ .| +..++++++++++||+|+.|+|++.+
T Consensus 15 MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~Vieavpe~~~- 93 (495)
T PRK07531 15 IGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWIQESVPERLD- 93 (495)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEEEEcCcCCHH-
Confidence 8999999999999999999999998766432 12 56778999999999999999998876
Q ss_pred hhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEec
Q 022170 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 140 (301)
Q Consensus 61 ~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~g 140 (301)
++..+.+. +.+. .++ .++|++||+.+..+ ++++.+.. + +..++++|+... ..+.++.+++
T Consensus 94 vk~~l~~~--l~~~--~~~-~~iI~SsTsgi~~s-~l~~~~~~------~----~r~~~~hP~nP~----~~~~Lvevv~ 153 (495)
T PRK07531 94 LKRRVLAE--IDAA--ARP-DALIGSSTSGFLPS-DLQEGMTH------P----ERLFVAHPYNPV----YLLPLVELVG 153 (495)
T ss_pred HHHHHHHH--HHhh--CCC-CcEEEEcCCCCCHH-HHHhhcCC------c----ceEEEEecCCCc----ccCceEEEcC
Confidence 77755431 2211 123 36788888877644 55555532 2 256888886632 1346788999
Q ss_pred CC---HHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHhhcCCCcc
Q 022170 141 GS---EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLG-VSEALTLGQSLGISASTLTKILNSSSARCW 216 (301)
Q Consensus 141 g~---~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~-~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~ 216 (301)
|+ ++.+++++++++.+|+.+++++ |.++|++..-+... ++|++.|+++.|++++++.++++.+.+.+|
T Consensus 154 g~~t~~e~~~~~~~~~~~lG~~~v~~~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~ 225 (495)
T PRK07531 154 GGKTSPETIRRAKEILREIGMKPVHIA--------KEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRW 225 (495)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEeec--------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCc
Confidence 86 7899999999999999999997 46677777766677 499999999999999999999999887766
Q ss_pred ccccCCCCCCcccCCCCCCCCCC-CcchhhHHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHH
Q 022170 217 SSDSYNPVPGVMEGVPASRNYGG-GFASKLMAKDLNLAL-ASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 290 (301)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kd~~~~~-~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~ 290 (301)
... +|.. .-|..+ .-.+..+.+-+.-.+ +..++.+-.+++.....+.+....+.-.|..++...
T Consensus 226 ~~~--Gpf~--------~~dl~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (495)
T PRK07531 226 AQM--GLFE--------TYRIAGGEAGMRHFLAQFGPCLKWPWTKLMDVPDLDDALVDKIAGQSDAQSGGLSIREL 291 (495)
T ss_pred ccc--chHH--------HHHhcCcHHHHHHHHHHhchhhhhHHHhccCCCccCHHHHHHHHHHHHHHcCCCCHHHH
Confidence 421 1110 001111 011223333333322 234555544566666666555555555555555443
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=150.59 Aligned_cols=192 Identities=20% Similarity=0.317 Sum_probs=161.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC---C--CCCCCCHHHHH---hcCCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---G--VPTKETPFEVA---EASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~---g--~~~~~s~~e~~---~~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||..|+.|.+.+||.|.+|||+.++++.+.+. | +..+.|+++.+ +....|++.|..... +...++++.+++
T Consensus 17 MGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~p-VD~~I~~L~p~L 95 (487)
T KOG2653|consen 17 MGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAP-VDQFIEELVPYL 95 (487)
T ss_pred hhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCc-HHHHHHHHHhhc
Confidence 89999999999999999999999999988765 2 34467899876 568899999987776 888887655555
Q ss_pred cCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHH
Q 022170 73 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 152 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 152 (301)
.+|.+|||-.+.....+.+..+.+.. . ++-|+.+.|+|++..++.|. .+|.||+++++..++++
T Consensus 96 -----ekgDiIIDGGNs~y~dT~RR~~el~k------~----GilfvG~GVSGGEEGAR~GP-SlMpGg~~~Awp~ik~i 159 (487)
T KOG2653|consen 96 -----EKGDIIIDGGNSEYQDTERRCRELAK------K----GILFVGSGVSGGEEGARYGP-SLMPGGSKEAWPHIKDI 159 (487)
T ss_pred -----CCCCEEEeCCcccCcchHHHHHHHHh------c----CcEEEecCccCcccccccCC-ccCCCCChHHHHHHHHH
Confidence 36789999988766655555555543 2 38899999999999999998 89999999999999999
Q ss_pred HHhcCC-------CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh
Q 022170 153 FLSMGK-------NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN 209 (301)
Q Consensus 153 l~~~~~-------~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~-~G~~~~~~~~~~~ 209 (301)
|+.++. .+.++|+-|+++.+||++|-+.++-+++++|+..+.++ .|++.+++.+++.
T Consensus 160 fq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~ 224 (487)
T KOG2653|consen 160 FQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFD 224 (487)
T ss_pred HHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 988742 45789999999999999999999999999999999999 7999888877765
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-18 Score=161.83 Aligned_cols=178 Identities=18% Similarity=0.208 Sum_probs=138.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCC-------------CCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.+||.+|+++||+|++||++++++++. .+.| ++.++++++ +.+||+||.|+|+
T Consensus 18 MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~aDlViEav~E 96 (507)
T PRK08268 18 MGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LADCDLVVEAIVE 96 (507)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCCCCEEEEcCcc
Confidence 89999999999999999999999988773 4455 466778866 5699999999999
Q ss_pred CccchhhhhcCC-CccccCCCCCCCeEE-EEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHHHhhcc
Q 022170 57 SSHQVLDVYNGP-NGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAG 133 (301)
Q Consensus 57 ~~~~~~~v~~~~-~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~a~~g 133 (301)
+.+ ++..+++. +.+ .+++.++ +|+||+++. ++++.+.. ..+..+.||++ +|++
T Consensus 97 ~~~-vK~~vf~~l~~~-----~~~~ailasntStl~i~---~la~~~~~------p~r~~G~hff~Pa~v~--------- 152 (507)
T PRK08268 97 RLD-VKQALFAQLEAI-----VSPDCILATNTSSLSIT---AIAAALKH------PERVAGLHFFNPVPLM--------- 152 (507)
T ss_pred cHH-HHHHHHHHHHhh-----CCCCcEEEECCCCCCHH---HHHhhcCC------cccEEEEeecCCcccC---------
Confidence 988 88887642 222 2345566 599999997 45554432 12223489998 6776
Q ss_pred ceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022170 134 TLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 209 (301)
Q Consensus 134 ~l~~~~gg---~~~~~~~~~~ll~~~~~~~~~~g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~ 209 (301)
.++.+++| ++++++++.++++.+++.++++++ +| ++.|-+.. ..++|++.++++.|++++++.+++.
T Consensus 153 ~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~~~~~~iD~al~ 223 (507)
T PRK08268 153 KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGVADPATIDAILR 223 (507)
T ss_pred eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 46888876 889999999999999999999987 56 34444442 4889999999999999999999997
Q ss_pred hcC
Q 022170 210 SSS 212 (301)
Q Consensus 210 ~~~ 212 (301)
.+.
T Consensus 224 ~~~ 226 (507)
T PRK08268 224 EAA 226 (507)
T ss_pred hcC
Confidence 654
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=157.44 Aligned_cols=249 Identities=18% Similarity=0.182 Sum_probs=166.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-----------------CCCHHHHHhcCCEEEEecCCCccchhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-----------------KETPFEVAEASDVVITMLPSSSHQVLD 63 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-----------------~~s~~e~~~~adiVi~~vp~~~~~~~~ 63 (301)
||+.+|..|+++||+|++|+|++. .+.+.+.|... ++++ +.+..+|+||+|++++. ..+
T Consensus 13 mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~vk~~~--~~~ 88 (341)
T PRK08229 13 IGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTVKSAA--TAD 88 (341)
T ss_pred HHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEecCcc--hHH
Confidence 799999999999999999999764 46666655432 3344 56789999999999764 677
Q ss_pred hhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEec--c---cCCCHHHhh---ccce
Q 022170 64 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA--P---VSGGVLAAE---AGTL 135 (301)
Q Consensus 64 v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--p---v~g~~~~a~---~g~l 135 (301)
++......+ .++++++++++ .....+.+.+.+.+ ..++.+ | +..+|.... .|++
T Consensus 89 ~~~~l~~~~-----~~~~iii~~~n-G~~~~~~l~~~~~~------------~~~~~g~~~~~~~~~~pg~~~~~~~g~l 150 (341)
T PRK08229 89 AAAALAGHA-----RPGAVVVSFQN-GVRNADVLRAALPG------------ATVLAGMVPFNVISRGPGAFHQGTSGAL 150 (341)
T ss_pred HHHHHHhhC-----CCCCEEEEeCC-CCCcHHHHHHhCCC------------CcEEEEEEEEEEEecCCceEEecCCCce
Confidence 775433332 34567877754 33334455555432 123333 2 233332222 4454
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH
Q 022170 136 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVS--------------------MLGVSEALTLGQ 195 (301)
Q Consensus 136 ~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~--------------------~~~~~E~~~l~~ 195 (301)
.+. +.+.++++.++|+..+.++.+.++++.+...|++.|.+.... ..++.|++.+++
T Consensus 151 ~~~---~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~ 227 (341)
T PRK08229 151 AIE---ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLK 227 (341)
T ss_pred Eec---CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 332 335578899999999999999999999999999999754433 378999999999
Q ss_pred HcCCCHHHHHHHHhhcC-----CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHH------------HHHHHHH
Q 022170 196 SLGISASTLTKILNSSS-----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLN------------LALASAK 258 (301)
Q Consensus 196 ~~G~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~------------~~~~~a~ 258 (301)
+.|++++.+.++...+. ..++..... ...+.+.++.. ...+.+|+. .+++.++
T Consensus 228 a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G~i~~~a~ 297 (341)
T PRK08229 228 AAGIRPARLTPLPPAWIPRLLRLPDPLFRRL-------AGRMLAIDPLA---RSSMSDDLAAGRATEIDWINGEIVRLAG 297 (341)
T ss_pred HcCCCccccCCCChhhhhhhhcCChHHHHHH-------HHHhhccCCcc---CchHHHHHHcCCcchHHHHhhHHHHHHH
Confidence 99999876544333221 011111100 00111222221 345899999 7999999
Q ss_pred HcCCCchHHHHHHHHHHHHHHCCCCC
Q 022170 259 EVGVDCPLTSQAQDIYAKLCENGHDS 284 (301)
Q Consensus 259 ~~g~~~p~~~~~~~~~~~a~~~g~g~ 284 (301)
++|+++|..+.++++++.+.+.|..-
T Consensus 298 ~~gv~~P~~~~~~~~~~~~~~~~~~~ 323 (341)
T PRK08229 298 RLGAPAPVNARLCALVHEAERAGARP 323 (341)
T ss_pred HcCCCCcHHHHHHHHHHHHHhCCCcC
Confidence 99999999999999999998876533
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-18 Score=151.19 Aligned_cols=242 Identities=16% Similarity=0.138 Sum_probs=156.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC------------------------CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM------------------------GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~------------------------g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.+||.+|+++||+|++||+++++++.+.+. +++.++++.+++++||+||+|+|+
T Consensus 12 mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~aD~Vi~avpe 91 (288)
T PRK09260 12 MGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVADADLVIEAVPE 91 (288)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcCCCEEEEeccC
Confidence 89999999999999999999999998775431 134567888999999999999998
Q ss_pred CccchhhhhcCCCccccCCCCCCCeEE-EEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccce
Q 022170 57 SSHQVLDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 135 (301)
Q Consensus 57 ~~~~~~~v~~~~~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l 135 (301)
+.+ ++..+.+. +.+. ..+++++ +++||++|....+. +.. .....+.+|+ +|+.++ .+
T Consensus 92 ~~~-~k~~~~~~--l~~~--~~~~~il~~~tSt~~~~~l~~~---~~~------~~r~~g~h~~-~Pv~~~-------~L 149 (288)
T PRK09260 92 KLE-LKKAVFET--ADAH--APAECYIATNTSTMSPTEIASF---TKR------PERVIAMHFF-NPVHKM-------KL 149 (288)
T ss_pred CHH-HHHHHHHH--HHhh--CCCCcEEEEcCCCCCHHHHHhh---cCC------cccEEEEecC-CCcccC-------ce
Confidence 876 66554331 2221 2345544 79999999864433 321 1111236888 787664 57
Q ss_pred EEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 136 TFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 136 ~~~~gg---~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
+.+++| +++++++++++++.+++.++++++ ..+.. .|-+. ...++|++.+.+..-.+++++-.++..+.
T Consensus 150 ve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d-~~Gf~----~nRl~---~~~~~ea~~~~~~gv~~~~~iD~~~~~g~ 221 (288)
T PRK09260 150 VELIRGLETSDETVQVAKEVAEQMGKETVVVNE-FPGFV----TSRIS---ALVGNEAFYMLQEGVATAEDIDKAIRLGL 221 (288)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecC-cccHH----HHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 889998 899999999999999999999986 12222 23222 25668999999876678999988776553
Q ss_pred CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchH
Q 022170 213 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFS 288 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~ 288 (301)
+. + .+|.. +-....++...+-++.+.+...+.-.|.|++....+--+...+.|.|..||+
T Consensus 222 g~-p----~Gp~~-----------~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~ 281 (288)
T PRK09260 222 NF-P----MGPLE-----------LGDLVGLDTRLNNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYT 281 (288)
T ss_pred CC-C----CCHHH-----------HHHHhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECC
Confidence 21 0 11110 0001224444443433333222222345555554444444666777877774
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-18 Score=159.50 Aligned_cols=238 Identities=15% Similarity=0.151 Sum_probs=160.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCC-------------CCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.+||.+|+++||+|++||++++++++. .+.| ++.++++++ +.+||+||.|+|+
T Consensus 16 MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~aDlVIEav~E 94 (503)
T TIGR02279 16 MGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LADAGLVIEAIVE 94 (503)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCCCCEEEEcCcC
Confidence 89999999999999999999999988653 3334 345778865 5699999999999
Q ss_pred CccchhhhhcCC-CccccCCCCCCCeEEE-EeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHHHhhcc
Q 022170 57 SSHQVLDVYNGP-NGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAG 133 (301)
Q Consensus 57 ~~~~~~~v~~~~-~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~a~~g 133 (301)
+.+ ++..+++. +.++ +++.++. ++||.++. ++++.+.+ .....+.||++ +|++
T Consensus 95 ~~~-vK~~vf~~l~~~~-----~~~~IlasnTStl~i~---~iA~~~~~------p~r~~G~HFf~Papv~--------- 150 (503)
T TIGR02279 95 NLE-VKKALFAQLEELC-----PADTIIASNTSSLSIT---AIAAGLAR------PERVAGLHFFNPAPVM--------- 150 (503)
T ss_pred cHH-HHHHHHHHHHhhC-----CCCeEEEECCCCCCHH---HHHHhcCc------ccceEEEeccCccccC---------
Confidence 887 88876642 2222 3443333 56666665 45555532 12223589999 6776
Q ss_pred ceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022170 134 TLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 209 (301)
Q Consensus 134 ~l~~~~gg---~~~~~~~~~~ll~~~~~~~~~~g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~ 209 (301)
.++.+++| ++++++++.++++.+++.++++++ +|. ++|+++. ..++|++.++++.+++++++.+++.
T Consensus 151 ~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~Nrl~~----~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 151 ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVNRVAR----PYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 26889999 899999999999999999999996 563 4444443 6889999999999999999999998
Q ss_pred hcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHH-HH-cCCCchHHHHHHHHHHHHHHCCCCCCch
Q 022170 210 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASA-KE-VGVDCPLTSQAQDIYAKLCENGHDSKDF 287 (301)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a-~~-~g~~~p~~~~~~~~~~~a~~~g~g~~d~ 287 (301)
.+.+.. .+|.. . -|+ ..++....-.+.+.+.. .+ .-.|.++++...+.-+...+.|.|..||
T Consensus 222 ~~~G~~-----mGPf~------l--~D~---~Gldv~~~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y 285 (503)
T TIGR02279 222 DGAGFP-----MGPFE------L--TDL---IGHDVNFAVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDY 285 (503)
T ss_pred hcCCCC-----cCHHH------H--HHH---hhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeC
Confidence 654321 11110 0 011 11333333333332211 11 1134566666666566667788888887
Q ss_pred H
Q 022170 288 S 288 (301)
Q Consensus 288 ~ 288 (301)
.
T Consensus 286 ~ 286 (503)
T TIGR02279 286 R 286 (503)
T ss_pred C
Confidence 4
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-18 Score=151.03 Aligned_cols=242 Identities=13% Similarity=0.109 Sum_probs=160.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhh-------HH-----------HHHhCC-------------CCCCCC--HHHHHhcC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNV-------MK-----------MFSDMG-------------VPTKET--PFEVAEAS 47 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~-------~~-----------~l~~~g-------------~~~~~s--~~e~~~~a 47 (301)
||..||..++.+||+|++||++++. ++ .+.+.| ++.+.+ +.+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 9999999999999999999999852 11 112222 333333 66888999
Q ss_pred CEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecc-----
Q 022170 48 DVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP----- 122 (301)
Q Consensus 48 diVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p----- 122 (301)
|+||.|||++.+ ++..+++. +.+. ..+++++ +||+++....++++.+.. +.+..+.||+++|
T Consensus 81 D~ViEav~E~~~-~K~~~f~~--l~~~--~~~~~il--aSntS~~~~~~la~~~~~------p~r~~g~Hf~~Pp~~~~l 147 (314)
T PRK08269 81 DLVFEAVPEVLD-AKREALRW--LGRH--VDADAII--ASTTSTFLVTDLQRHVAH------PERFLNAHWLNPAYLMPL 147 (314)
T ss_pred CEEEECCcCCHH-HHHHHHHH--HHhh--CCCCcEE--EEccccCCHHHHHhhcCC------cccEEEEecCCccccCce
Confidence 999999999988 88877653 3222 2345444 788888878888887642 2222348999988
Q ss_pred --cCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 022170 123 --VSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS 200 (301)
Q Consensus 123 --v~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~ 200 (301)
|++++ ++++++++++.++++.+|+.++++++.+ + +++.......++|++.++++.|++
T Consensus 148 vEVv~g~------------~t~~e~~~~~~~ll~~lGk~~v~v~d~~-G-------fi~nri~~~~l~EAl~l~e~g~~~ 207 (314)
T PRK08269 148 VEVSPSD------------ATDPAVVDRLAALLERIGKVPVVCGPSP-G-------YIVPRIQALAMNEAARMVEEGVAS 207 (314)
T ss_pred EEEeCCC------------CCCHHHHHHHHHHHHHcCCcEEEecCCC-C-------cchHHHHHHHHHHHHHHHHhCCCC
Confidence 55444 5689999999999999999999999853 3 234445568889999999999999
Q ss_pred HHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHH
Q 022170 201 ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE-VGVDCPLTSQAQDIYAKLCE 279 (301)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~-~g~~~p~~~~~~~~~~~a~~ 279 (301)
++++.+++..+.+..+. ..+|.. . -| ...++....-++.+.+...+ .--+.|+++...+--+.+.+
T Consensus 208 ~e~iD~a~~~g~G~~~~--~~Gpf~------~--~D---~~Gld~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k 274 (314)
T PRK08269 208 AEDIDKAIRTGFGLRFA--VLGLLE------F--ID---WGGCDILYYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLR 274 (314)
T ss_pred HHHHHHHHHhCCCCCcc--CcCHHH------H--HH---hhhHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCccc
Confidence 99999999877542110 011100 0 01 11233333333333322211 11245666665555556777
Q ss_pred CCCCCCchH
Q 022170 280 NGHDSKDFS 288 (301)
Q Consensus 280 ~g~g~~d~~ 288 (301)
.|.|..||.
T Consensus 275 sG~GfY~y~ 283 (314)
T PRK08269 275 TGAGFYDYA 283 (314)
T ss_pred CCCcceeCC
Confidence 888888884
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-17 Score=142.00 Aligned_cols=237 Identities=18% Similarity=0.231 Sum_probs=160.7
Q ss_pred CcHHHHHHHHhCCC----eEEEE-cCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAGY----KMAVH-DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G~----~V~~~-dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||.+|+++|.++|| +|++| ||++++.+.+.+.|+..+.++.++++++|+||+|+| +.+ +++++.+....+
T Consensus 11 mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~-~~~vl~~l~~~~--- 85 (266)
T PLN02688 11 MAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQV-VKDVLTELRPLL--- 85 (266)
T ss_pred HHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHH-HHHHHHHHHhhc---
Confidence 89999999999998 89999 999999999988899888899999999999999998 666 899986532222
Q ss_pred CCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHHhhccceEEEecCCHHHHHHHHHHH
Q 022170 76 NSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 153 (301)
Q Consensus 76 ~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 153 (301)
.+++++|.+ ++++.++.+ +.... ..++ ..|..+.........++...+++++.++.++++|
T Consensus 86 --~~~~~iIs~~~g~~~~~l~---~~~~~------------~~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~ 148 (266)
T PLN02688 86 --SKDKLLVSVAAGITLADLQ---EWAGG------------RRVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLF 148 (266)
T ss_pred --CCCCEEEEecCCCcHHHHH---HHcCC------------CCEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHH
Confidence 345666655 666655443 22211 1344 3565554433322222222334788999999999
Q ss_pred HhcCCCeEeeCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccc-cCCC
Q 022170 154 LSMGKNTIYCGG---------AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSD-SYNP 223 (301)
Q Consensus 154 ~~~~~~~~~~g~---------~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~ 223 (301)
+.+|. ++++++ .|++.+ +.+.++..+.|+ +++.|+|++++.+++..+...++.+. ..+.
T Consensus 149 ~~~G~-~~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~ 217 (266)
T PLN02688 149 GAVGK-IWVVDEKLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLETGK 217 (266)
T ss_pred HhCCC-EEEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99998 888754 344444 355666777777 88899999999999987754433311 0000
Q ss_pred CCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCC
Q 022170 224 VPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 281 (301)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 281 (301)
-+..+ .++--.|+ -.....++..++.|++-.+.+++.+.++++.+.+
T Consensus 218 ~~~~l----~~~v~spg-------G~t~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 218 HPGQL----KDMVTSPG-------GTTIAGVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred CHHHH----HHhCCCCc-------hHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 00000 01111121 1234667778889999999999999999998765
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-17 Score=145.19 Aligned_cols=232 Identities=16% Similarity=0.205 Sum_probs=156.5
Q ss_pred CcHHHHHHHHhCC----CeEEEEcCChh-hHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKAG----YKMAVHDVNCN-VMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~G----~~V~~~dr~~~-~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
||.+|+.+|.++| ++|++|||+++ +.+.+... |+..+.++.++++++|+||+|||+ .. +.+++.+....+
T Consensus 14 mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p-~~-~~~vl~~l~~~~-- 89 (279)
T PRK07679 14 IAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKP-KD-VAEALIPFKEYI-- 89 (279)
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCH-HH-HHHHHHHHHhhc--
Confidence 8999999999998 88999999864 56777654 787788899999999999999995 44 788875433222
Q ss_pred CCCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCC---HHHhhccceEEEecCC---HHHHH
Q 022170 75 GNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG---VLAAEAGTLTFMVGGS---EDAYQ 147 (301)
Q Consensus 75 ~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~---~~~a~~g~l~~~~gg~---~~~~~ 147 (301)
.+++++|++ +|+++++.+++. .. ++|+++. ...+..+.++++++++ ++.++
T Consensus 90 ---~~~~liIs~~aGi~~~~l~~~~---~~----------------~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~ 147 (279)
T PRK07679 90 ---HNNQLIISLLAGVSTHSIRNLL---QK----------------DVPIIRAMPNTSAAILKSATAISPSKHATAEHIQ 147 (279)
T ss_pred ---CCCCEEEEECCCCCHHHHHHHc---CC----------------CCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHH
Confidence 245789996 899988766632 11 1233333 3344555667888875 66889
Q ss_pred HHHHHHHhcCCCeE------e--eCCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhhcCCCc-cc
Q 022170 148 AAKPLFLSMGKNTI------Y--CGGAGNGAAAKICNNLTMAVSMLGVSEALT-LGQSLGISASTLTKILNSSSARC-WS 217 (301)
Q Consensus 148 ~~~~ll~~~~~~~~------~--~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~-l~~~~G~~~~~~~~~~~~~~~~~-~~ 217 (301)
.++++|+.+|..++ + ++..|++.++ +..+.|++. .+++.|+|.+++.+++......+ .+
T Consensus 148 ~v~~l~~~~G~~~~v~e~~~~~~~a~~Gsgpa~-----------~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~ 216 (279)
T PRK07679 148 TAKALFETIGLVSVVEEEDMHAVTALSGSGPAY-----------IYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEM 216 (279)
T ss_pred HHHHHHHhCCcEEEeCHHHhhhHHHhhcCHHHH-----------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999998554 3 3444444442 233444444 58999999999999998743211 22
Q ss_pred cccCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCC
Q 022170 218 SDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 281 (301)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 281 (301)
....+..|. .+.+++ .++++.. ..++..++.|+.--+.+++.+.++++.+.|
T Consensus 217 ~~~~~~~~~-----~l~~~v~spgg~t~-------~gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 217 LKASEKHPS-----ILRKEITSPGGTTE-------AGIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HHhcCCCHH-----HHHHhcCCCchHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 211111111 233455 5666543 445555667888888888888888887765
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.4e-17 Score=145.41 Aligned_cols=275 Identities=14% Similarity=0.105 Sum_probs=166.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--------------CCCCCCHHHHH-hcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVA-EASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~e~~-~~adiVi~~vp~~~~~~~~v~ 65 (301)
||+++|..|+++||+|++|+|+++.++.+++.+ ++.+.++.+++ ..+|+||+|+|+ .+ +++++
T Consensus 11 ~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks-~~-~~~~l 88 (326)
T PRK14620 11 FGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT-QQ-LRTIC 88 (326)
T ss_pred HHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH-HH-HHHHH
Confidence 799999999999999999999998888887632 11335666766 589999999995 44 88888
Q ss_pred cCCCc-cccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHH
Q 022170 66 NGPNG-LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSED 144 (301)
Q Consensus 66 ~~~~~-~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~ 144 (301)
....+ .+. +...+++.++++...+.....+.+.+. .. .+.+..+.+|.+.........+...+.|.+.+
T Consensus 89 ~~l~~~~l~----~~~~vv~~~nGi~~~~~~~~~~~l~~~----~~--~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~~~ 158 (326)
T PRK14620 89 QQLQDCHLK----KNTPILICSKGIEKSSLKFPSEIVNEI----LP--NNPIAILSGPSFAKEIAEKLPCSIVLAGQNET 158 (326)
T ss_pred HHHHHhcCC----CCCEEEEEEcCeeCCCCccHHHHHHHH----cC--CCceEeecCCcHHHHHHcCCCcEEEEecCCHH
Confidence 76554 432 233567777777553222222222210 00 01244556665443333222333344455666
Q ss_pred HHHHHHHHHHhcCCCeEeeCCcchHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHcCC--CHHHHH
Q 022170 145 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC-----------------NNLTMAVSMLGVSEALTLGQSLGI--SASTLT 205 (301)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~-----------------~N~~~~~~~~~~~E~~~l~~~~G~--~~~~~~ 205 (301)
..+.+..+|+.-+.++....++-.....|++ .|.......+++.|+..++++.|. ++++++
T Consensus 159 ~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~ 238 (326)
T PRK14620 159 LGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNTLI 238 (326)
T ss_pred HHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcchhh
Confidence 5666767766555444444343222233322 366666788999999999999987 899997
Q ss_pred HHHhhcC----CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCC
Q 022170 206 KILNSSS----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 281 (301)
Q Consensus 206 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 281 (301)
++.+.+. +.+..++++..+..+..+.+..+.....-+.-++...++.+.++++++|+++|+.+.+++++
T Consensus 239 gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~------- 311 (326)
T PRK14620 239 GPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLL------- 311 (326)
T ss_pred ccchhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------
Confidence 5444432 22223344332222222222211111112234566777899999999999999999999987
Q ss_pred CCCCchHHHHHHH
Q 022170 282 HDSKDFSCVFQHY 294 (301)
Q Consensus 282 ~g~~d~~~~~~~~ 294 (301)
+++.+...+++.+
T Consensus 312 ~~~~~~~~~~~~~ 324 (326)
T PRK14620 312 YENISLEKTISVI 324 (326)
T ss_pred hCCCCHHHHHHHH
Confidence 3455666655544
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=142.06 Aligned_cols=185 Identities=19% Similarity=0.231 Sum_probs=126.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----C--------------CCCCCCHHHHHhcCCEEEEecCCCccch
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----G--------------VPTKETPFEVAEASDVVITMLPSSSHQV 61 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g--------------~~~~~s~~e~~~~adiVi~~vp~~~~~~ 61 (301)
||.+||..|+++||+|++||+++++.+.+.+. + +..++++.+++++||+||+|+|++.+..
T Consensus 15 mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~ 94 (311)
T PRK06130 15 MGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELK 94 (311)
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEEEeccCcHHHH
Confidence 89999999999999999999999888766541 2 2345678888899999999999775413
Q ss_pred hhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecC
Q 022170 62 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 141 (301)
Q Consensus 62 ~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg 141 (301)
..++.....++ .++ ++|.++|..+. ..++++.+.. .....+.++.++|..+ .+..++.|
T Consensus 95 ~~v~~~l~~~~-----~~~-~ii~s~tsg~~-~~~l~~~~~~------~~~~ig~h~~~p~~~~--------~l~~i~~g 153 (311)
T PRK06130 95 RDVFARLDGLC-----DPD-TIFATNTSGLP-ITAIAQAVTR------PERFVGTHFFTPADVI--------PLVEVVRG 153 (311)
T ss_pred HHHHHHHHHhC-----CCC-cEEEECCCCCC-HHHHHhhcCC------cccEEEEccCCCCccC--------ceEEEeCC
Confidence 44554433333 233 34444443333 3355555432 1101124444444322 23445555
Q ss_pred ---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 022170 142 ---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 213 (301)
Q Consensus 142 ---~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~ 213 (301)
+++.++.+.++++.+|+.++++++...+. +++|++. ..++|++.++++.|++++++.+++..+.+
T Consensus 154 ~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~---i~nr~~~----~~~~Ea~~l~~~g~~~~~~id~~~~~~~g 221 (311)
T PRK06130 154 DKTSPQTVATTMALLRSIGKRPVLVKKDIPGF---IANRIQH----ALAREAISLLEKGVASAEDIDEVVKWSLG 221 (311)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc---HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 68899999999999999999997532333 7778765 67899999999999999999999987654
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-16 Score=142.61 Aligned_cols=168 Identities=17% Similarity=0.187 Sum_probs=135.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.++|..|.++||+|++|||++. +++++++.+||+||+|+|.+. ..+++.+... + .++
T Consensus 110 mG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~--~~~~~~~l~~-l-----~~~ 168 (374)
T PRK11199 110 LGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHL--TEEVIARLPP-L-----PED 168 (374)
T ss_pred hhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHH--HHHHHHHHhC-C-----CCC
Confidence 899999999999999999998631 356778889999999999765 5666654333 2 367
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHHhhccceEEEecC-CHHHHHHHHHHHHhcCC
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGK 158 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~a~~g~l~~~~gg-~~~~~~~~~~ll~~~~~ 158 (301)
++|+|+|++++.....+.+... ..|+ .+|++|++.....+..++++++ +++.++.+.++++.+|.
T Consensus 169 ~iv~Dv~SvK~~~~~~~~~~~~-------------~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~ 235 (374)
T PRK11199 169 CILVDLTSVKNAPLQAMLAAHS-------------GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGA 235 (374)
T ss_pred cEEEECCCccHHHHHHHHHhCC-------------CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCC
Confidence 8999999999887777765432 2466 8899998776667777888877 66788999999999999
Q ss_pred CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022170 159 NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 206 (301)
Q Consensus 159 ~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~ 206 (301)
+++++++.+....+++++.+ .++..++++..+++ .+.+.+.+.+
T Consensus 236 ~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 236 RLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred EEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 99999999999999999833 67777888888877 7888777644
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.6e-16 Score=134.80 Aligned_cols=184 Identities=16% Similarity=0.246 Sum_probs=135.7
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCCCC-CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~~-~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||.+||.+|.++|+ +|++|||++++.+.+.+.|+. .+.++.++. ++|+||+|+|.+. +.+++.+... +
T Consensus 11 mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~--~~~~~~~l~~-l----- 81 (275)
T PRK08507 11 MGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA--IIEILPKLLD-I----- 81 (275)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH--HHHHHHHHhc-c-----
Confidence 79999999999996 788999999999888887764 455777765 5999999999654 6777755433 3
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEec-ccCCC----HHHhh----ccceEEEec---CCHHH
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGG----VLAAE----AGTLTFMVG---GSEDA 145 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-pv~g~----~~~a~----~g~l~~~~g---g~~~~ 145 (301)
.++++|+|++++.+...+.+.+.. +..|+.+ |+.|+ |..+. .|..+++++ ++++.
T Consensus 82 ~~~~iv~d~gs~k~~i~~~~~~~~-------------~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~ 148 (275)
T PRK08507 82 KENTTIIDLGSTKAKIIESVPKHI-------------RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKH 148 (275)
T ss_pred CCCCEEEECccchHHHHHHHHHhc-------------CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHH
Confidence 246799999888777665554331 1356776 98874 44332 577677776 46778
Q ss_pred HHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 146 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
++.++++++.+|.+++++++.+....+++++|+.. ....++.+++. .+.+.+.+.++.+.+
T Consensus 149 ~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~~~~~~~~~~~~~g 209 (275)
T PRK08507 149 QERAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPH-IISFALANTVL----KEEDERNIFDLAGGG 209 (275)
T ss_pred HHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hcCChHHHHhhcccc
Confidence 89999999999999999999999999999999976 44445555442 266666666655543
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-15 Score=131.16 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=106.9
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhH-----HHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVM-----KMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~-----~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
|.+||++|+++||+|++|||++++. +.+.+.|+..++++.++++++|+||+|+|++.+ +++|+. +++++
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aa-V~eVl~---GLaa~-- 105 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKG-TFSIAR---TIIEH-- 105 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHH-HHHHHH---HHHhc--
Confidence 7899999999999999999987765 458888999999999999999999999999887 889873 45554
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCc-eEEecccCCCHHHhhccceEEEec--------CCHHHHH
Q 022170 77 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENP-VMLDAPVSGGVLAAEAGTLTFMVG--------GSEDAYQ 147 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~pv~g~~~~a~~g~l~~~~g--------g~~~~~~ 147 (301)
..+|+++||+||++|.+..++-+..-+.+- +. .++ .|..+.|=+.+.+. .++..| .+++..+
T Consensus 106 L~~GaIVID~STIsP~t~~~~~e~~l~~~r-~d----~~v~s~HP~~vP~~~~~~----~~~~~~~~~~~~~~A~ee~i~ 176 (341)
T TIGR01724 106 VPENAVICNTCTVSPVVLYYSLEKILRLKR-TD----VGISSMHPAAVPGTPQHG----HYVIGGKPTAGKEMATEEQIS 176 (341)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHhhcCc-cc----cCeeccCCCCCCCCCCCc----eeeeccccccccccCCHHHHH
Confidence 357899999999999999888776322100 01 112 23333333333220 111111 2577888
Q ss_pred HHHHHHHhcCCCeEee
Q 022170 148 AAKPLFLSMGKNTIYC 163 (301)
Q Consensus 148 ~~~~ll~~~~~~~~~~ 163 (301)
++.++.+..++.++.+
T Consensus 177 ~~~el~~~~~~~~~~~ 192 (341)
T TIGR01724 177 KCVELAKSTGKKAYVV 192 (341)
T ss_pred HHHHHHHHhCCCeeec
Confidence 8999999999887766
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=134.03 Aligned_cols=166 Identities=15% Similarity=0.164 Sum_probs=123.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||.+||..|.++||+|++|||+++..+.+.+.|.. ...+..+.++++|+||+|+|.+. +.+++.+....+ .+
T Consensus 11 mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~--~~~~~~~l~~~l-----~~ 83 (279)
T PRK07417 11 IGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL--LLPPSEQLIPAL-----PP 83 (279)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH--HHHHHHHHHHhC-----CC
Confidence 79999999999999999999999999888887753 23333457789999999999654 566665432222 35
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHH-Hhh-------ccceEEEe---cCCHHHHH
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVL-AAE-------AGTLTFMV---GGSEDAYQ 147 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~-~a~-------~g~l~~~~---gg~~~~~~ 147 (301)
+.+++|++++++...+.+.+.. ..|+. .|++|++. ... .+...+++ +++++.++
T Consensus 84 ~~ii~d~~Svk~~~~~~~~~~~--------------~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~ 149 (279)
T PRK07417 84 EAIVTDVGSVKAPIVEAWEKLH--------------PRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALA 149 (279)
T ss_pred CcEEEeCcchHHHHHHHHHHhh--------------CCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHH
Confidence 6799999999887765554321 24666 69888762 222 34334444 24788899
Q ss_pred HHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHH
Q 022170 148 AAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGV 187 (301)
Q Consensus 148 ~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~ 187 (301)
.++++++.+|.+++++++.+....+++++|+.......++
T Consensus 150 ~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l~ 189 (279)
T PRK07417 150 IVEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAALI 189 (279)
T ss_pred HHHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHHH
Confidence 9999999999999999999999999999998876654443
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=134.83 Aligned_cols=181 Identities=17% Similarity=0.161 Sum_probs=127.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHH-----------HHhCC------------CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMG------------VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~-----------l~~~g------------~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
||.+||.+|+++|++|++||+++++.+. +.+.| .....+..+++++||+||+|+|++
T Consensus 15 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~aD~Vieav~e~ 94 (295)
T PLN02545 15 MGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDADFIIEAIVES 94 (295)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCCCEEEEcCccC
Confidence 8999999999999999999999988753 33332 122233346789999999999988
Q ss_pred ccchhhhhcCCCccccCCCCCCCeEEE-EeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceE
Q 022170 58 SHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT 136 (301)
Q Consensus 58 ~~~~~~v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~ 136 (301)
.+ ++..+.+. +.+. ..++.+++ ++||+++.+..+. +.. .....+++|+++|..+ .++
T Consensus 95 ~~-~k~~v~~~--l~~~--~~~~~il~s~tS~i~~~~l~~~---~~~------~~r~~g~h~~~pp~~~--------~lv 152 (295)
T PLN02545 95 ED-LKKKLFSE--LDRI--CKPSAILASNTSSISITRLASA---TQR------PQQVIGMHFMNPPPIM--------KLV 152 (295)
T ss_pred HH-HHHHHHHH--HHhh--CCCCcEEEECCCCCCHHHHHhh---cCC------CcceEEEeccCCcccC--------ceE
Confidence 87 77665432 2221 23445664 8899987754443 221 1111237888888764 234
Q ss_pred EEec---CCHHHHHHHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 137 FMVG---GSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 137 ~~~g---g~~~~~~~~~~ll~~~~~~~~~~g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
.++. ++++.+++++++|+.+|+.++++++ .| .++++++. ..++|++.+.+....+++++-.++..+.
T Consensus 153 eiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g-----~i~nri~~----~~~~ea~~~~~~gv~~~~~iD~~~~~g~ 223 (295)
T PLN02545 153 EIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG-----FIVNRILM----PMINEAFYALYTGVASKEDIDTGMKLGT 223 (295)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc-----HHHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 5554 4889999999999999999999886 44 24555555 5679999999988889999987776554
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=133.83 Aligned_cols=182 Identities=19% Similarity=0.195 Sum_probs=125.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC-------------CCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.+||.+|+++||+|++||++++.++.+.+ .| ++.+++++ .+++||+||+|+|+
T Consensus 15 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aD~Vieavpe 93 (292)
T PRK07530 15 MGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLADCDLVIEAATE 93 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcCCCEEEEcCcC
Confidence 8999999999999999999999998776432 23 34556664 57899999999998
Q ss_pred Cccchhhhh-cCCCccccCCCCCCCeEEE-EeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHHHhhcc
Q 022170 57 SSHQVLDVY-NGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAG 133 (301)
Q Consensus 57 ~~~~~~~v~-~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~a~~g 133 (301)
+.+ ++..+ .+....+ .++++++ ++||+.+. .+++.+.. .....+++|++ +|+....
T Consensus 94 ~~~-~k~~~~~~l~~~~-----~~~~ii~s~ts~~~~s---~la~~~~~------~~r~~g~h~~~p~~~~~~v------ 152 (292)
T PRK07530 94 DET-VKRKIFAQLCPVL-----KPEAILATNTSSISIT---RLASATDR------PERFIGIHFMNPVPVMKLV------ 152 (292)
T ss_pred CHH-HHHHHHHHHHhhC-----CCCcEEEEcCCCCCHH---HHHhhcCC------cccEEEeeccCCcccCceE------
Confidence 765 55544 3322222 3455665 77777765 45555431 11112367777 3433221
Q ss_pred ceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 134 TLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 134 ~l~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
.+....+++++.++++.++++.+++.++++++.+ -+++++++. ..++|++.+.++.-.+++++-.++..+.
T Consensus 153 ei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~~----~~~~ea~~~~~~g~~~~~~iD~~~~~g~ 223 (292)
T PRK07530 153 ELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRILL----PMINEAIYTLYEGVGSVEAIDTAMKLGA 223 (292)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHHH----HHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 1112235789999999999999999999998754 566677766 5679999998885558999888876553
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-14 Score=133.20 Aligned_cols=187 Identities=18% Similarity=0.237 Sum_probs=138.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH-hCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS-DMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~-~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||.++|..|.++||+|++|+|++++...+. +.|+..+.++.+++.++|+||+|+|.+. +.+++....+.+ .+
T Consensus 12 mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~--~~~vl~~l~~~l-----~~ 84 (437)
T PRK08655 12 LGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINV--TEDVIKEVAPHV-----KE 84 (437)
T ss_pred HHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHH--HHHHHHHHHhhC-----CC
Confidence 789999999999999999999998865444 4577777788899999999999999643 677775533322 35
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEec-ccCCCHHHhhccceEEEecC---CHHHHHHHHHHHHh
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLS 155 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~ 155 (301)
+++++|++++.+...+.+.+.++. +..|+.+ |++|.......+...+++.+ +++.++.++++|+.
T Consensus 85 ~~iViDvsSvK~~~~~~l~~~~~~-----------~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~ 153 (437)
T PRK08655 85 GSLLMDVTSVKERPVEAMEEYAPE-----------GVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEK 153 (437)
T ss_pred CCEEEEcccccHHHHHHHHHhcCC-----------CCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 689999999998888877766532 2578876 99886555566777777765 57788999999999
Q ss_pred cCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022170 156 MGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 209 (301)
Q Consensus 156 ~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~ 209 (301)
+|.+++++++...... +.+.....++..++.+..+ ++.|.+.++...+.+
T Consensus 154 ~G~~v~~~~~e~HD~~---~a~vs~lph~~a~al~~~l-~~~g~~~~~~~~~a~ 203 (437)
T PRK08655 154 EGARVIVTSPEEHDRI---MSVVQGLTHFAYISIASTL-KRLGVDIKESRKFAS 203 (437)
T ss_pred cCCEEEECCHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhhcC
Confidence 9999988876544333 3444444455555555544 667999877654443
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=127.00 Aligned_cols=242 Identities=15% Similarity=0.065 Sum_probs=154.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHH-----------HHhCCC-------------CCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMGV-------------PTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~-----------l~~~g~-------------~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.+||.+|+++||+|++||++++..+. +.+.|. +.++++ +.+++||+||.|+|+
T Consensus 16 mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~d~ViEav~E 94 (286)
T PRK07819 16 MGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFADRQLVIEAVVE 94 (286)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCCCCEEEEeccc
Confidence 8999999999999999999999998776 444442 256777 567999999999999
Q ss_pred CccchhhhhcCCCccccCCCC-CCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEec-ccCCCHHHhhccc
Q 022170 57 SSHQVLDVYNGPNGLLQGGNS-VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEAGT 134 (301)
Q Consensus 57 ~~~~~~~v~~~~~~~l~~~~~-~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-pv~g~~~~a~~g~ 134 (301)
+.+ ++..+++. ++.. . +++.+++..|+..|.+.... .... ..+..+.||+++ |+++.. +
T Consensus 95 ~~~-~K~~l~~~---l~~~-~~~~~~il~snTS~~~~~~la~--~~~~------~~r~~g~hf~~P~~~~~lv------E 155 (286)
T PRK07819 95 DEA-VKTEIFAE---LDKV-VTDPDAVLASNTSSIPIMKLAA--ATKR------PGRVLGLHFFNPVPVLPLV------E 155 (286)
T ss_pred CHH-HHHHHHHH---HHHh-hCCCCcEEEECCCCCCHHHHHh--hcCC------CccEEEEecCCCcccCceE------E
Confidence 987 88776542 2211 2 45677877777666654443 2221 121223678874 444433 4
Q ss_pred eEEEecCCHHHHHHHHHHHH-hcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 135 LTFMVGGSEDAYQAAKPLFL-SMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 135 l~~~~gg~~~~~~~~~~ll~-~~~~~~~~~g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
++...++++++++++.+++. .+++.++.+++ +| ... |-+ ....++|++.+.++...+++++-.++..+.
T Consensus 156 lv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pG--fi~----nRi---~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~ 226 (286)
T PRK07819 156 LVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSG--FVV----NAL---LVPYLLSAIRMVESGFATAEDIDKAMVLGC 226 (286)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCC--hHH----HHH---HHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 45555679999999999988 59999999976 43 222 222 236679999999887788999988887654
Q ss_pred CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHCCCCCCch
Q 022170 213 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE-VGVDCPLTSQAQDIYAKLCENGHDSKDF 287 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~-~g~~~p~~~~~~~~~~~a~~~g~g~~d~ 287 (301)
+.. .+|.. . -| ...++...+-++.+.+...+ .-.+.|+++...+.-+...+.|.|..||
T Consensus 227 G~p-----~Gpf~------~--~D---~~Gld~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 227 AHP-----MGPLR------L--SD---LVGLDTVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred CCC-----CCHHH------H--HH---HhccHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 321 11110 0 01 12345555554444332222 1234566665555555566667777665
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=128.93 Aligned_cols=183 Identities=17% Similarity=0.222 Sum_probs=123.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh--------------CC-------------CCCCCCHHHHHhcCCEEEEe
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD--------------MG-------------VPTKETPFEVAEASDVVITM 53 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~--------------~g-------------~~~~~s~~e~~~~adiVi~~ 53 (301)
||.+||..|+++||+|++||++++.++...+ .| +...++. +++++||+||.|
T Consensus 14 mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViea 92 (291)
T PRK06035 14 MGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ESLSDADFIVEA 92 (291)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HHhCCCCEEEEc
Confidence 8999999999999999999999988764321 12 1233445 577899999999
Q ss_pred cCCCccchhh-hhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHHHhh
Q 022170 54 LPSSSHQVLD-VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAE 131 (301)
Q Consensus 54 vp~~~~~~~~-v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~a~ 131 (301)
+|++.. ++. ++......+ +++++++ |+++.....++++.+.. ..+..+.||++ +|+.+.. ...
T Consensus 93 v~e~~~-~k~~~~~~l~~~~-----~~~~il~--S~tsg~~~~~la~~~~~------~~r~ig~hf~~P~~~~~~v-Ev~ 157 (291)
T PRK06035 93 VPEKLD-LKRKVFAELERNV-----SPETIIA--SNTSGIMIAEIATALER------KDRFIGMHWFNPAPVMKLI-EVV 157 (291)
T ss_pred CcCcHH-HHHHHHHHHHhhC-----CCCeEEE--EcCCCCCHHHHHhhcCC------cccEEEEecCCCcccCccE-EEe
Confidence 998764 444 443333332 3445554 33333444566665532 11122467777 4455432 222
Q ss_pred ccceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 132 AGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 132 ~g~l~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
.+.. .+++.++++.++++.+++.++++++.+.....|+++|+ ++|++.+.+..-.+++++-.++..+
T Consensus 158 ~g~~-----T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~--------~~ea~~~~~~g~a~~~~iD~~~~~~ 224 (291)
T PRK06035 158 RAAL-----TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGW--------LLEAIRSFEIGIATIKDIDEMCKLA 224 (291)
T ss_pred CCCC-----CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHH--------HHHHHHHHHcCCCCHHHHHHHHhhc
Confidence 3332 27899999999999999999999987777777777554 4688888877557899998887665
Q ss_pred C
Q 022170 212 S 212 (301)
Q Consensus 212 ~ 212 (301)
.
T Consensus 225 ~ 225 (291)
T PRK06035 225 F 225 (291)
T ss_pred C
Confidence 4
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-13 Score=121.42 Aligned_cols=188 Identities=13% Similarity=0.100 Sum_probs=129.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------C---------CCCCCCCHHHHHhcCCEEEEecCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M---------GVPTKETPFEVAEASDVVITMLPSSSHQ 60 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~---------g~~~~~s~~e~~~~adiVi~~vp~~~~~ 60 (301)
||.+||.+|+.+||+|++||++++..+.+.+ . .+..++++++++++||+|+.|+|++.+
T Consensus 18 MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlViEavpE~l~- 96 (321)
T PRK07066 18 IGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFIQESAPEREA- 96 (321)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEEEECCcCCHH-
Confidence 8999999999999999999999887654322 2 235667899999999999999999887
Q ss_pred hhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEec
Q 022170 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 140 (301)
Q Consensus 61 ~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~g 140 (301)
++..++. .+.+. .+++ .++.+||+ +....++++.+.. +.+..+.||+.+|-.-. ++=++.
T Consensus 97 vK~~lf~--~l~~~--~~~~-aIlaSnTS-~l~~s~la~~~~~------p~R~~g~HffnP~~~~p--------LVEVv~ 156 (321)
T PRK07066 97 LKLELHE--RISRA--AKPD-AIIASSTS-GLLPTDFYARATH------PERCVVGHPFNPVYLLP--------LVEVLG 156 (321)
T ss_pred HHHHHHH--HHHHh--CCCC-eEEEECCC-ccCHHHHHHhcCC------cccEEEEecCCccccCc--------eEEEeC
Confidence 7777653 22221 2344 57766665 4445566665542 22222356665553322 222223
Q ss_pred C---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcc
Q 022170 141 G---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW 216 (301)
Q Consensus 141 g---~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~ 216 (301)
| ++++++.+..+++.+|+.++.+...-.+... |=+. ...++|++.+.+....+++++-.++..|.+..|
T Consensus 157 g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~----NRl~---~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~ 228 (321)
T PRK07066 157 GERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIA----DRLL---EALWREALHLVNEGVATTGEIDDAIRFGAGIRW 228 (321)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHH----HHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCc
Confidence 2 7899999999999999988888532233333 3333 366799999999988999999999887765443
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.9e-14 Score=122.78 Aligned_cols=184 Identities=14% Similarity=0.166 Sum_probs=122.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-------------------------CCCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------------GVPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-------------------------g~~~~~s~~e~~~~adiVi~~vp 55 (301)
||.++|..|+++||+|++||++++.++.+.+. ++..++++++++++||+||.|+|
T Consensus 14 mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDlVieavp 93 (287)
T PRK08293 14 LGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVKDADLVIEAVP 93 (287)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhcCCCEEEEecc
Confidence 89999999999999999999999876655321 23356788889999999999999
Q ss_pred CCccchhhhhcCCCccccCCCCCCCeEE-EEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccc
Q 022170 56 SSSHQVLDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 134 (301)
Q Consensus 56 ~~~~~~~~v~~~~~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~ 134 (301)
++.+..++++.+....+ ++++++ .++||..+.. +++.+.. +.+..+.||..+|. ...
T Consensus 94 e~~~~k~~~~~~l~~~~-----~~~~ii~sntSt~~~~~---~~~~~~~------~~r~vg~Hf~~p~~--------~~~ 151 (287)
T PRK08293 94 EDPEIKGDFYEELAKVA-----PEKTIFATNSSTLLPSQ---FAEATGR------PEKFLALHFANEIW--------KNN 151 (287)
T ss_pred CCHHHHHHHHHHHHhhC-----CCCCEEEECcccCCHHH---HHhhcCC------cccEEEEcCCCCCC--------cCC
Confidence 87541344454333332 344555 5667776653 3333321 11111234433322 122
Q ss_pred eEEEe---cCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 135 LTFMV---GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 135 l~~~~---gg~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
+..++ ..++++++.+..+++.+++.++.+.+...+..+.-+. ...++|++.+.+....+++++-.++..+
T Consensus 152 lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~-------~~~~~ea~~l~~~g~a~~~~iD~a~~~~ 224 (287)
T PRK08293 152 TAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLL-------VPFLSAALALWAKGVADPETIDKTWMIA 224 (287)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHH-------HHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 34444 3478999999999999999988886434444443332 2556999999998778999998888766
Q ss_pred CC
Q 022170 212 SA 213 (301)
Q Consensus 212 ~~ 213 (301)
.+
T Consensus 225 ~g 226 (287)
T PRK08293 225 TG 226 (287)
T ss_pred cC
Confidence 43
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-13 Score=121.09 Aligned_cols=187 Identities=12% Similarity=0.140 Sum_probs=130.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC----CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP----TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~----~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||++||..|.++||+|.+|+++++..+.....+.. ..+++.+++++||+||+|+|.+ . +.+++.+.... .
T Consensus 11 iG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~-~~~vl~~l~~~--~-- 84 (359)
T PRK06545 11 IGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-A-TAALLAELADL--E-- 84 (359)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-H-HHHHHHHHhhc--C--
Confidence 89999999999999999999988776554444332 2356788889999999999964 4 78888654321 0
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHH--------HhhccceEEEec---CCHH
Q 022170 77 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVL--------AAEAGTLTFMVG---GSED 144 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~--------~a~~g~l~~~~g---g~~~ 144 (301)
..++.+|.|+++++....+.+.+.... ...|+. .|+.|++. ....+..++++. .+++
T Consensus 85 l~~~~ivtDv~SvK~~i~~~~~~~~~~-----------~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~ 153 (359)
T PRK06545 85 LKPGVIVTDVGSVKGAILAEAEALLGD-----------LIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPD 153 (359)
T ss_pred CCCCcEEEeCccccHHHHHHHHHhcCC-----------CCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHH
Confidence 135689999999998877776654321 257887 69888642 222455466665 4788
Q ss_pred HHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 145 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
.++.++++++.+|..++++.+......+.+++..-..+. + .|+...+.+.+....+...+
T Consensus 154 ~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia-----~--al~~~~~~~~~~~~~la~~g 213 (359)
T PRK06545 154 AVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILA-----S--SLAARLAGEHPLALRLAAGG 213 (359)
T ss_pred HHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHH-----H--HHHHhhccCchHHHhhhccc
Confidence 899999999999999988987666666666655544332 2 22555566666555555543
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.8e-13 Score=116.19 Aligned_cols=183 Identities=15% Similarity=0.159 Sum_probs=117.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHH-----------HHHhCC-------------CCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMK-----------MFSDMG-------------VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~-----------~l~~~g-------------~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.++|..|+++|++|++||+++++++ .+.+.| +..+++.+ .+++||+||+|+|.
T Consensus 14 mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~aDlVi~av~e 92 (282)
T PRK05808 14 MGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKDADLVIEAATE 92 (282)
T ss_pred HHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccCCeeeecccc
Confidence 799999999999999999999999874 334444 23355654 47899999999997
Q ss_pred Cccchh-hhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecc-cCCCHHHhhccc
Q 022170 57 SSHQVL-DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP-VSGGVLAAEAGT 134 (301)
Q Consensus 57 ~~~~~~-~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p-v~g~~~~a~~g~ 134 (301)
+.. ++ +++......+ ++++++ .++|.+.... ++++.+.. +.+..+.+|..++ +.... ..
T Consensus 93 ~~~-~k~~~~~~l~~~~-----~~~~il-~s~ts~~~~~-~la~~~~~------~~r~ig~h~~~P~~~~~~v-ev---- 153 (282)
T PRK05808 93 NMD-LKKKIFAQLDEIA-----KPEAIL-ATNTSSLSIT-ELAAATKR------PDKVIGMHFFNPVPVMKLV-EI---- 153 (282)
T ss_pred cHH-HHHHHHHHHHhhC-----CCCcEE-EECCCCCCHH-HHHHhhCC------CcceEEeeccCCcccCccE-EE----
Confidence 655 55 5554433333 344444 3333333322 55555532 1222235666533 32221 11
Q ss_pred eEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 135 LTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 135 l~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
.--.+.+++.++.+.++++.+|+.++++++ ..+. +.|-+. ...++|++.+.++.-.+++++-.++..+.
T Consensus 154 -~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d-~~g~----i~~Ri~---~~~~~ea~~~~~~gv~~~~diD~~~~~g~ 222 (282)
T PRK05808 154 -IRGLATSDATHEAVEALAKKIGKTPVEVKN-APGF----VVNRIL---IPMINEAIFVLAEGVATAEDIDEGMKLGC 222 (282)
T ss_pred -eCCCCCCHHHHHHHHHHHHHcCCeeEEecC-ccCh----HHHHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 111245899999999999999999999975 2222 223222 36679999999887788999988876553
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.5e-12 Score=112.46 Aligned_cols=162 Identities=13% Similarity=0.198 Sum_probs=117.2
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCCC--CCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGV--PTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~--~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||..+|..|.+.|+ +|++|||++++.+.+.+.|. ..+.++.+++.++|+||+|+|.+. ..+++......+
T Consensus 17 mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~--~~~v~~~l~~~l---- 90 (307)
T PRK07502 17 IGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA--SGAVAAEIAPHL---- 90 (307)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH--HHHHHHHHHhhC----
Confidence 78999999999995 89999999999888887775 345678888899999999999644 666665432222
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEec-ccCCCHH----Hh----hccceEEEe---cCCHH
Q 022170 77 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVL----AA----EAGTLTFMV---GGSED 144 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-pv~g~~~----~a----~~g~l~~~~---gg~~~ 144 (301)
.++.+++|++++.+...+.+.+.... ++.|+.+ |+.|++. .+ ..|..++++ +++++
T Consensus 91 -~~~~iv~dvgs~k~~~~~~~~~~~~~-----------~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~ 158 (307)
T PRK07502 91 -KPGAIVTDVGSVKASVIAAMAPHLPE-----------GVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPA 158 (307)
T ss_pred -CCCCEEEeCccchHHHHHHHHHhCCC-----------CCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHH
Confidence 34578999999888777666554321 2578876 8887542 11 133334444 56788
Q ss_pred HHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHH
Q 022170 145 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180 (301)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~ 180 (301)
.++.+.++++.+|.+++++++......+-++...-.
T Consensus 159 ~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph 194 (307)
T PRK07502 159 AVARLTAFWRALGARVEEMDPEHHDLVLAITSHLPH 194 (307)
T ss_pred HHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHH
Confidence 999999999999999999887555555555555444
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-11 Score=104.47 Aligned_cols=243 Identities=16% Similarity=0.193 Sum_probs=146.0
Q ss_pred CcHHHHHHHHhCC---CeEEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKAG---YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~G---~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||..++..|.++| ++|.+|+|++++.+.+.+. |+..+.+..+++..+|+||+|+|. .. +++++......+
T Consensus 13 mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~-~~~v~~~l~~~~---- 86 (267)
T PRK11880 13 MASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QV-MEEVLSELKGQL---- 86 (267)
T ss_pred HHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HH-HHHHHHHHHhhc----
Confidence 7899999999999 7899999999999888775 777778888888999999999995 44 888886532211
Q ss_pred CCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHHHhhccceEEEecC--CHHHHHHHHHH
Q 022170 77 SVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPL 152 (301)
Q Consensus 77 ~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~l 152 (301)
+++||.+ ++++.+ .+.+.+.. +.+++. .|. .|.....+...+..+. +++.++.++.+
T Consensus 87 ---~~~vvs~~~gi~~~---~l~~~~~~-----------~~~iv~~~P~--~p~~~~~~~~~i~~~~~~~~~~~~~v~~l 147 (267)
T PRK11880 87 ---DKLVVSIAAGVTLA---RLERLLGA-----------DLPVVRAMPN--TPALVGAGMTALTANALVSAEDRELVENL 147 (267)
T ss_pred ---CCEEEEecCCCCHH---HHHHhcCC-----------CCcEEEecCC--chHHHcCceEEEecCCCCCHHHHHHHHHH
Confidence 2455555 445433 33333321 122332 232 2333333432344443 78899999999
Q ss_pred HHhcCCCeEeeCCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCccccccCCCCCCcccC
Q 022170 153 FLSMGKNTIYCGGAGNGAAA-KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEG 230 (301)
Q Consensus 153 l~~~~~~~~~~g~~g~a~~~-k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 230 (301)
|+.+|. ++++.+...-... -+..+.-. ....++..+...+.+.|+++++..+++.... +........+..+..+
T Consensus 148 ~~~lG~-~~~~~~e~~~d~~~a~~~~~pa-~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l-- 223 (267)
T PRK11880 148 LSAFGK-VVWVDDEKQMDAVTAVSGSGPA-YVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAEL-- 223 (267)
T ss_pred HHhCCe-EEEECChHhcchHHHHhcChHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--
Confidence 999996 5566632211111 12222111 1123334444556779999999888876552 1110000000000000
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCC
Q 022170 231 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 281 (301)
Q Consensus 231 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 281 (301)
.++--.++ --....++..++.|++-.+.+++.+.++++.+.+
T Consensus 224 --~~~v~tpg-------G~t~~gl~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 224 --RDNVTSPG-------GTTIAALRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred --HHhCCCCc-------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 00000111 1234667778889999999999999999998764
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-11 Score=106.61 Aligned_cols=176 Identities=15% Similarity=0.144 Sum_probs=120.3
Q ss_pred CcHHHHHHHHhCCCe---EEEEcCChhhHHHHHhC--CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAGYK---MAVHDVNCNVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G~~---V~~~dr~~~~~~~l~~~--g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||.+|++.|.+.|++ +.+|+|++++.+.+.+. +...+.+..++++++|+||+|+| +.. +.+++.+.. +
T Consensus 11 mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~-~~~vl~~l~--~--- 83 (258)
T PRK06476 11 ITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQI-AEEVLRALR--F--- 83 (258)
T ss_pred HHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHH-HHHHHHHhc--c---
Confidence 799999999999864 57899999999888765 46677889999999999999999 555 888876431 1
Q ss_pred CCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHh
Q 022170 76 NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLS 155 (301)
Q Consensus 76 ~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~ 155 (301)
.+++++|+++. +.+...+.+.+.. . ...+...|... .+.....+.+++++ +.++++|+.
T Consensus 84 --~~~~~vis~~a--g~~~~~l~~~~~~------~----~~~~r~~P~~~---~a~~~g~t~~~~~~----~~~~~l~~~ 142 (258)
T PRK06476 84 --RPGQTVISVIA--ATDRAALLEWIGH------D----VKLVRAIPLPF---VAERKGVTAIYPPD----PFVAALFDA 142 (258)
T ss_pred --CCCCEEEEECC--CCCHHHHHHHhCC------C----CCEEEECCCCh---hhhCCCCeEecCCH----HHHHHHHHh
Confidence 24567776543 2333455444432 0 12456677632 22222335566654 579999999
Q ss_pred cCCCeEeeCCcchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 156 MGKNTIYCGGAGNGAAAKICNNL-----TMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 156 ~~~~~~~~g~~g~a~~~k~~~N~-----~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
+|..++ +++. |..+++ ..+.....+.++..++++.|+|+++..+++...
T Consensus 143 lG~~~~-~~~e------~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~ 196 (258)
T PRK06476 143 LGTAVE-CDSE------EEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPL 196 (258)
T ss_pred cCCcEE-ECCh------HhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 998665 5532 122222 334444577888899999999999998888754
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-11 Score=105.47 Aligned_cols=185 Identities=14% Similarity=0.166 Sum_probs=118.6
Q ss_pred CcHHHHHHHHhCCC----eEEEEcCChhhHHHHHhC--CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKAGY----KMAVHDVNCNVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~G~----~V~~~dr~~~~~~~l~~~--g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
||.+|+..|.++|+ +|++|+|++++.+.+.+. |+..+.+..+++..+|+||+|+| +.. +.+++.+..+.+
T Consensus 11 mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~-~~~vl~~l~~~l-- 86 (273)
T PRK07680 11 MGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLD-IYPLLQKLAPHL-- 86 (273)
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHH-HHHHHHHHHhhc--
Confidence 79999999999994 799999999998887764 66677788898999999999999 455 888886543322
Q ss_pred CCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEec--CCHHHHHHHHHH
Q 022170 75 GNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--GSEDAYQAAKPL 152 (301)
Q Consensus 75 ~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~g--g~~~~~~~~~~l 152 (301)
.++++||++++.. +.+.+.+.+.. . .+++++. .+.....|...+..| .+++.++.++++
T Consensus 87 ---~~~~~iis~~ag~--~~~~L~~~~~~------~----~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~~l 147 (273)
T PRK07680 87 ---TDEHCLVSITSPI--SVEQLETLVPC------Q----VARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLERL 147 (273)
T ss_pred ---CCCCEEEEECCCC--CHHHHHHHcCC------C----EEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHHHH
Confidence 2456888887633 24455444321 0 1344432 334455677555565 356778999999
Q ss_pred HHhcCCCeEeeCCc-chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 153 FLSMGKNTIYCGGA-GNGA-AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 153 l~~~~~~~~~~g~~-g~a~-~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
|+.+|. ++++.+. ..+. .+--+.-.+.+..+..+.++. .++.|++.++..+++...
T Consensus 148 l~~~G~-~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~ 205 (273)
T PRK07680 148 FSNIST-PLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEM 205 (273)
T ss_pred HHcCCC-EEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHH
Confidence 999995 6666542 1111 111111123323333333322 244899999888876644
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.5e-11 Score=105.44 Aligned_cols=246 Identities=13% Similarity=0.161 Sum_probs=146.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------------CCCCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------------TKETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-------------~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
||..+|..|+++||+|++|+| +++.+.+.+.|.. ..++.++....+|+||+|+|... +++++..
T Consensus 11 iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~~--~~~~~~~ 87 (305)
T PRK12921 11 VGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAYQ--LDAAIPD 87 (305)
T ss_pred HHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecccC--HHHHHHH
Confidence 699999999999999999999 8888888776532 23455666688999999999654 7888765
Q ss_pred CCccccCCCCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecC----C
Q 022170 68 PNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG----S 142 (301)
Q Consensus 68 ~~~~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg----~ 142 (301)
....+ .++++||.. .++... ..+.+.+.... ...++.++.++..++..-...+.-.+.+|. .
T Consensus 88 l~~~~-----~~~~~ii~~~nG~~~~--~~l~~~~~~~~------v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 88 LKPLV-----GEDTVIIPLQNGIGQL--EQLEPYFGRER------VLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred HHhhc-----CCCCEEEEeeCCCChH--HHHHHhCCccc------EEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 44333 233455544 444433 34444443210 001234455554432111111221344443 2
Q ss_pred HHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCCC-
Q 022170 143 EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM---------------------AVSMLGVSEALTLGQSLGIS- 200 (301)
Q Consensus 143 ~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~---------------------~~~~~~~~E~~~l~~~~G~~- 200 (301)
.+..+.+..+|...+.++....++-...-.|++.|... ......+.|+..++++.|++
T Consensus 155 ~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~ 234 (305)
T PRK12921 155 SERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPL 234 (305)
T ss_pred CHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34556777788877766655556777778888877543 34567789999999999986
Q ss_pred -HHHHHHHHhhc---CCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022170 201 -ASTLTKILNSS---SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 276 (301)
Q Consensus 201 -~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 276 (301)
.+.+.+.+..- +.... +.+. +|+..+-. .+..-=...++++++++|+++|..+.++++++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~--------sSm~------~D~~~gr~-tEid~i~G~vv~~a~~~gv~~P~~~~l~~~~~~ 299 (305)
T PRK12921 235 RDDVVEEIVKIFAGAPGDMK--------TSML------RDMEKGRP-LEIDHLQGVLLRRARAHGIPTPILDTVYALLKA 299 (305)
T ss_pred ChhHHHHHHHHHhccCCCCC--------cHHH------HHHHcCCc-ccHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 33333333221 11000 0011 11111111 111122357999999999999999999998865
Q ss_pred H
Q 022170 277 L 277 (301)
Q Consensus 277 a 277 (301)
.
T Consensus 300 ~ 300 (305)
T PRK12921 300 Y 300 (305)
T ss_pred H
Confidence 4
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-12 Score=103.79 Aligned_cols=159 Identities=16% Similarity=0.195 Sum_probs=107.2
Q ss_pred CcHHHHHHHHhCCCeEEEEc-CChhhHHHHHhC-CCC-CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHD-VNCNVMKMFSDM-GVP-TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~d-r~~~~~~~l~~~-g~~-~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||.+||++|++.||+|++-+ |.+++.+...+. +.. ...++.++++.+|+||++||... +.+++.+....
T Consensus 12 iG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a--~~~v~~~l~~~------ 83 (211)
T COG2085 12 IGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEA--IPDVLAELRDA------ 83 (211)
T ss_pred HHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHH--HHhHHHHHHHH------
Confidence 69999999999999999885 455555554443 332 24588899999999999999765 67777654332
Q ss_pred CCCeEEEEeCCC---------------CHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCC
Q 022170 78 VRPQLLIDSSTI---------------DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGS 142 (301)
Q Consensus 78 ~~~~ivid~st~---------------~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~ 142 (301)
.+++++||+++- .-+.++.+++.+++..+.+ -++.+.+-.+..........-.+++|-|
T Consensus 84 ~~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVk------AFn~i~a~~l~~~~~~~~~~~v~vagDD 157 (211)
T COG2085 84 LGGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVK------AFNTIPAAVLADLAKPGGRRDVLVAGDD 157 (211)
T ss_pred hCCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhh------hhcccCHHHhccCCCcCCceeEEEecCc
Confidence 247899999884 1244556666665432211 1445554444322222222334455557
Q ss_pred HHHHHHHHHHHHhcCCCeEeeCCcchHHHHH
Q 022170 143 EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 173 (301)
Q Consensus 143 ~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k 173 (301)
.++.+.+..+.+.+|..++.+|++..+..+.
T Consensus 158 ~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le 188 (211)
T COG2085 158 AEAKAVVAELAEDIGFRPLDAGPLENARILE 188 (211)
T ss_pred HHHHHHHHHHHHhcCcceeeccccccccccc
Confidence 7899999999999999999999976665554
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.1e-12 Score=103.50 Aligned_cols=142 Identities=15% Similarity=0.169 Sum_probs=86.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------------------CCCCCCCHHHHHhcCCEEEEecCCCcc-
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------------GVPTKETPFEVAEASDVVITMLPSSSH- 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------------g~~~~~s~~e~~~~adiVi~~vp~~~~- 59 (301)
+|.++|..|+++||+|++||.|+++++.+++. ...++++..+++.++|++|+|||++..
T Consensus 11 vGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~I~VpTP~~~ 90 (185)
T PF03721_consen 11 VGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVFICVPTPSDE 90 (185)
T ss_dssp THHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEEE----EBET
T ss_pred chHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEEEecCCCccc
Confidence 58999999999999999999999999888753 235667888889999999999998753
Q ss_pred -------chhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhh-
Q 022170 60 -------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE- 131 (301)
Q Consensus 60 -------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~- 131 (301)
.+.+++.. +.+. ..++++||..||+.|++++++...+.+. ..+...++....+|.+-.+..+.
T Consensus 91 ~~~~Dls~v~~a~~~---i~~~--l~~~~lvV~~STvppGtt~~~~~~ile~----~~~~~~~f~la~~PErl~~G~a~~ 161 (185)
T PF03721_consen 91 DGSPDLSYVESAIES---IAPV--LRPGDLVVIESTVPPGTTEELLKPILEK----RSGKKEDFHLAYSPERLREGRAIE 161 (185)
T ss_dssp TTSBETHHHHHHHHH---HHHH--HCSCEEEEESSSSSTTHHHHHHHHHHHH----HCCTTTCEEEEE------TTSHHH
T ss_pred cCCccHHHHHHHHHH---HHHH--HhhcceEEEccEEEEeeehHhhhhhhhh----hcccccCCeEEECCCccCCCCcch
Confidence 13333333 2222 2357899999999999999766655432 11111357888889775443332
Q ss_pred --ccceEEEecCCHHHH-HHHHH
Q 022170 132 --AGTLTFMVGGSEDAY-QAAKP 151 (301)
Q Consensus 132 --~g~l~~~~gg~~~~~-~~~~~ 151 (301)
...-.++.|.+++.. +++++
T Consensus 162 d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 162 DFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp HHHSSSEEEEEESSHHHHHHHHH
T ss_pred hccCCCEEEEeCCcHHHHHHHhc
Confidence 222245666655433 35554
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.3e-10 Score=95.57 Aligned_cols=223 Identities=13% Similarity=0.164 Sum_probs=154.7
Q ss_pred CeEEEEcCChhhHHHHHhC-------------------CCCCCCCHHHHHhcCCEEEEecCCCcc-------------ch
Q 022170 14 YKMAVHDVNCNVMKMFSDM-------------------GVPTKETPFEVAEASDVVITMLPSSSH-------------QV 61 (301)
Q Consensus 14 ~~V~~~dr~~~~~~~l~~~-------------------g~~~~~s~~e~~~~adiVi~~vp~~~~-------------~~ 61 (301)
.+|++.|.+..++..++.. +.-+.++.+.+++.+|+||++|.+|.. .+
T Consensus 27 i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~ 106 (481)
T KOG2666|consen 27 IEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYW 106 (481)
T ss_pred eEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHH
Confidence 3688999998888766543 234557888899999999999988743 11
Q ss_pred hhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhc---cceEEE
Q 022170 62 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA---GTLTFM 138 (301)
Q Consensus 62 ~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~---g~l~~~ 138 (301)
++.... +.+. ....++++.-||+...+++.+...+... ..| ..+..++.|.|-.+.-+.. ..=.++
T Consensus 107 es~ar~---ia~~--s~~~kivvekstvpv~aaesi~~il~~n----~~~--i~fqilsnpeflaegtaikdl~npdrvl 175 (481)
T KOG2666|consen 107 ESAARM---IADV--SVSDKIVVEKSTVPVKAAESIEKILNHN----SKG--IKFQILSNPEFLAEGTAIKDLFNPDRVL 175 (481)
T ss_pred HHHHHH---HHHh--ccCCeEEEeeccccchHHHHHHHHHhcC----CCC--ceeEeccChHHhcccchhhhhcCCceEE
Confidence 222111 1111 2345899999999999999998877531 122 2356677776643322221 111588
Q ss_pred ecCC--HHHHHH---HHHHHHhcC-CCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 139 VGGS--EDAYQA---AKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 139 ~gg~--~~~~~~---~~~ll~~~~-~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
+||+ ++-++. +..+++.+- ..-+.....-+++.-|++.|.+.+--+..++-+.++|++.|.|..++..+++..+
T Consensus 176 igg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatgadv~eva~avg~d~ 255 (481)
T KOG2666|consen 176 IGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATGADVSEVAYAVGTDS 255 (481)
T ss_pred ECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCHHHHHHHhcccc
Confidence 8984 444444 445555443 2334445678999999999999999999999999999999999999999888764
Q ss_pred CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCC
Q 022170 213 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD 263 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~ 263 (301)
-- +++++. -..||...++.||+-.++-+++.+|+|
T Consensus 256 ri---------g~kfl~-------asvgfggscfqkdilnlvyice~lnlp 290 (481)
T KOG2666|consen 256 RI---------GSKFLN-------ASVGFGGSCFQKDILNLVYICECLNLP 290 (481)
T ss_pred cc---------cHHHhh-------cccCcCchhHHHHHHHHHHHHhcCCCh
Confidence 11 112221 135889999999999999999999976
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-10 Score=100.39 Aligned_cols=243 Identities=14% Similarity=0.125 Sum_probs=144.7
Q ss_pred CcHHHHHHHHhCCC----eEEEEcCChhhHHHHHh-CCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAGY----KMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G~----~V~~~dr~~~~~~~l~~-~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||.+|+..|.++|+ +|++|||++++.+.+.+ .|+..+.+..+++.+||+||+||| |.. +.+++.+....+
T Consensus 13 MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~-~~~vl~~l~~~~--- 87 (272)
T PRK12491 13 MGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDL-YSSVINQIKDQI--- 87 (272)
T ss_pred HHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHH-HHHHHHHHHHhh---
Confidence 89999999999885 69999999999988875 687777888899999999999999 566 899986544333
Q ss_pred CCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecC--CHHHHHHHHHH
Q 022170 76 NSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPL 152 (301)
Q Consensus 76 ~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~l 152 (301)
.+++++|+. .+++.+..++ .+... . -.+--.|.. +.....|...+..+. +++..+.++.+
T Consensus 88 --~~~~lvISi~AGi~i~~l~~---~l~~~-----~-----~vvR~MPN~--~~~vg~g~t~~~~~~~~~~~~~~~v~~l 150 (272)
T PRK12491 88 --KNDVIVVTIAAGKSIKSTEN---EFDRK-----L-----KVIRVMPNT--PVLVGEGMSALCFNEMVTEKDIKEVLNI 150 (272)
T ss_pred --cCCcEEEEeCCCCcHHHHHH---hcCCC-----C-----cEEEECCCh--HHHHcCceEEEEeCCCCCHHHHHHHHHH
Confidence 234566655 6777665444 33210 0 011222322 233334543333332 45567889999
Q ss_pred HHhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCccccccCCCCCCccc
Q 022170 153 FLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGVME 229 (301)
Q Consensus 153 l~~~~~~~~~~g~--~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 229 (301)
|+.+|.. +.+.+ .....++--+.-.+.+..+. .....+.+.|++.++..+++.... |..........-|..
T Consensus 151 f~~~G~~-~~~~E~~~d~~talsgsgPAf~~~~~e---al~~a~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~-- 224 (272)
T PRK12491 151 FNIFGQT-EVVNEKLMDVVTSISGSSPAYVYMFIE---AMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGE-- 224 (272)
T ss_pred HHcCCCE-EEEcHHHhhhHHHhccCcHHHHHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH--
Confidence 9999974 55643 22222222222233332222 233556678999999888877653 111111000000000
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHC
Q 022170 230 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 280 (301)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 280 (301)
+.++--+|+.+ ....++..++.|+.--+.+++.+.++++.+.
T Consensus 225 --l~~~V~sPGGt-------T~~gl~~le~~~~~~~~~~av~aa~~r~~el 266 (272)
T PRK12491 225 --LKDMVCSPGGT-------TIEAVATLEEKGLRTAIISAMKRCTQKSMEM 266 (272)
T ss_pred --HHHhCCCCchH-------HHHHHHHHHHCChHHHHHHHHHHHHHHHHHH
Confidence 11111233322 2345566677888888888888888887654
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-11 Score=102.91 Aligned_cols=159 Identities=22% Similarity=0.217 Sum_probs=101.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------CCC---CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------GVP---TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 69 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------g~~---~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~ 69 (301)
||++|+..|+++||+|++|+|++++.+.+.+. |.. ...+..++++++|+||+|+|.. . +.+++.+..
T Consensus 12 mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~-~-~~~~l~~l~ 89 (219)
T TIGR01915 12 QGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD-H-VLKTLESLR 89 (219)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-H-HHHHHHHHH
Confidence 78999999999999999999999988776542 221 1246678889999999999954 4 777775433
Q ss_pred ccccCCCCCCCeEEEEeCCCCHH---------------HHHHHHHHHhh-chhhhccCCCCCceEEecccCCCHHHhhcc
Q 022170 70 GLLQGGNSVRPQLLIDSSTIDPQ---------------TSRNISAAVSN-CILKEKKDSWENPVMLDAPVSGGVLAAEAG 133 (301)
Q Consensus 70 ~~l~~~~~~~~~ivid~st~~p~---------------~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g 133 (301)
..+ ++++|||+++-.+. .++.+++.+.. ..+ ..-+.++.+.+..++ ....+
T Consensus 90 ~~l------~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~V------Vka~~~~~a~~~~~~-~~~~~ 156 (219)
T TIGR01915 90 DEL------SGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRV------VAAFHNLSAVLLQDV-DDEVD 156 (219)
T ss_pred Hhc------cCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeE------eeccccCCHHHhcCC-CCCCC
Confidence 222 24789998754321 12444444432 100 001222222223221 11122
Q ss_pred ceEEEecCCHHHHHHHHHHHHhc-CCCeEeeCCcchHHHHHH
Q 022170 134 TLTFMVGGSEDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKI 174 (301)
Q Consensus 134 ~l~~~~gg~~~~~~~~~~ll~~~-~~~~~~~g~~g~a~~~k~ 174 (301)
.-.+++|-|+++.+.+..+.+.+ |..++++|++..+..+.-
T Consensus 157 ~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e~ 198 (219)
T TIGR01915 157 CDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVES 198 (219)
T ss_pred CCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHHh
Confidence 32455555678888999999999 999999998766655443
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-10 Score=99.28 Aligned_cols=161 Identities=16% Similarity=0.246 Sum_probs=108.9
Q ss_pred HHHHHHhCC--CeEEEEcCChhhHHHHHhCCCCCCC-CHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 5 MASNLMKAG--YKMAVHDVNCNVMKMFSDMGVPTKE-TPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 5 lA~~L~~~G--~~V~~~dr~~~~~~~l~~~g~~~~~-s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
+|+.|.++| ++|++||++++..+...+.|+.... +..+.+.++|+||+|+|-. . +.+++....+.+ .+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~-~~~~l~~~~~~~-----~~~~ 73 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-A-IEDVLEEIAPYL-----KPGA 73 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-H-HHHHHHHHHCGS------TTS
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-H-HHHHHHHhhhhc-----CCCc
Confidence 688899999 6899999999999888888875533 2267889999999999954 4 777876644433 3578
Q ss_pred EEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCH--------HHhhccceEEEecC---CHHHHHHH
Q 022170 82 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGV--------LAAEAGTLTFMVGG---SEDAYQAA 149 (301)
Q Consensus 82 ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~--------~~a~~g~l~~~~gg---~~~~~~~~ 149 (301)
+|+|.+++.-.....+.+.... +..|+. .|++|.+ .....|...+++-+ +++.++.+
T Consensus 74 iv~Dv~SvK~~~~~~~~~~~~~-----------~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~ 142 (258)
T PF02153_consen 74 IVTDVGSVKAPIVEAMERLLPE-----------GVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELV 142 (258)
T ss_dssp EEEE--S-CHHHHHHHHHHHTS-----------SGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHhcCc-----------ccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHH
Confidence 9999999998888777766542 256665 5888872 22235776777744 45788999
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHH
Q 022170 150 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVS 183 (301)
Q Consensus 150 ~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~ 183 (301)
+.+++.+|.+++.+.+...=..+-+++.+-....
T Consensus 143 ~~l~~~~Ga~~~~~~~eeHD~~~A~vshlpH~~a 176 (258)
T PF02153_consen 143 EELWEALGARVVEMDAEEHDRIMAYVSHLPHLLA 176 (258)
T ss_dssp HHHHHHCT-EEEE--HHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHCCCEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998866555555655555444333
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.2e-10 Score=100.11 Aligned_cols=245 Identities=15% Similarity=0.176 Sum_probs=139.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-----------CCCHHHHHhcCCEEEEecCCCccchhhhhcCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-----------KETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 69 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-----------~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~ 69 (301)
||+.+|..|.++||+|++|+|+++..+.+.+.|... ..++.++ ..+|+||+|+|... +.+++....
T Consensus 11 ~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~--~~~~~~~l~ 87 (304)
T PRK06522 11 IGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQ--LPAALPSLA 87 (304)
T ss_pred HHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccccc--HHHHHHHHh
Confidence 699999999999999999999988888888777532 4455555 88999999999654 788887654
Q ss_pred ccccCCCCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCC--HHHhhccceEEEecC-C--H
Q 022170 70 GLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG--VLAAEAGTLTFMVGG-S--E 143 (301)
Q Consensus 70 ~~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~--~~~a~~g~l~~~~gg-~--~ 143 (301)
+.+. ++++||.+ .++... +.+.+.+....+ .. ++.+..+-..++ ......+. +.+|. + .
T Consensus 88 ~~l~-----~~~~iv~~~nG~~~~--~~l~~~~~~~~i--~~----~~~~~~~~~~~p~~v~~~~~g~--~~ig~~~~~~ 152 (304)
T PRK06522 88 PLLG-----PDTPVLFLQNGVGHL--EELAAYIGPERV--LG----GVVTHAAELEGPGVVRHTGGGR--LKIGEPDGES 152 (304)
T ss_pred hhcC-----CCCEEEEecCCCCcH--HHHHHhcCcccE--EE----EEEEEeeEecCCCEEEEcCCCC--EEEeCCCCCc
Confidence 4432 33345544 444433 233343322100 00 011111111110 00111233 33343 2 2
Q ss_pred HHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHcCCCH-
Q 022170 144 DAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT---------------------MAVSMLGVSEALTLGQSLGISA- 201 (301)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~---------------------~~~~~~~~~E~~~l~~~~G~~~- 201 (301)
+..+.+.++|+..+.++....++-...-.|++.|.. .......+.|+..++++.|++.
T Consensus 153 ~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~ 232 (304)
T PRK06522 153 AAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLS 232 (304)
T ss_pred HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 335667778887776654444455556666655532 3345677899999999999753
Q ss_pred -HHHHHHHhhc---CCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022170 202 -STLTKILNSS---SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 277 (301)
Q Consensus 202 -~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 277 (301)
+.+.+.+... +.....+ -..++..++..+-+ -=...++++++++|+++|..+.++++++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~sS----m~~D~~~gr~tEid-----------~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~ 297 (304)
T PRK06522 233 VEEVREYVRQVIQKTAANTSS----MLQDLEAGRPTEID-----------AIVGYVLRRGRKHGIPTPLNDALYGLLKAK 297 (304)
T ss_pred hHHHHHHHHHHhhccCCCCch----HHHHHHcCCCcccc-----------hhccHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 4444433321 1110000 01111112211111 123468999999999999999999988665
Q ss_pred H
Q 022170 278 C 278 (301)
Q Consensus 278 ~ 278 (301)
.
T Consensus 298 ~ 298 (304)
T PRK06522 298 E 298 (304)
T ss_pred H
Confidence 3
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-12 Score=102.92 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=92.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--------------CCCCCCHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
||+++|..|+++||+|++|.|+++.++.+++.+ +.++++++++++++|+|++++|. .. .++++.
T Consensus 10 ~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs-~~-~~~~~~ 87 (157)
T PF01210_consen 10 WGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS-QA-HREVLE 87 (157)
T ss_dssp HHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-GG-HHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-HH-HHHHHH
Confidence 799999999999999999999999999887642 34567899999999999999995 44 899998
Q ss_pred CCCccccCCCCCCCeEEEEeC-CCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHH
Q 022170 67 GPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 145 (301)
Q Consensus 67 ~~~~~l~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~ 145 (301)
+..+++. +++++|.++ +..+.+...+.+.+.+.. .. ..+.++.+|.+..+......+..++.+-|++.
T Consensus 88 ~l~~~l~-----~~~~ii~~~KG~~~~~~~~~~~~i~~~~----~~--~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~~ 156 (157)
T PF01210_consen 88 QLAPYLK-----KGQIIISATKGFEPGTLLLLSEVIEEIL----PI--PRIAVLSGPSFAEEIAEGKPTAVVIASKNEEV 156 (157)
T ss_dssp HHTTTSH-----TT-EEEETS-SEETTEEEEHHHHHHHHH----SS--CGEEEEESS--HHHHHTT--EEEEEEESSHHH
T ss_pred HHhhccC-----CCCEEEEecCCcccCCCccHHHHHHHHh----hh--cceEEeeCccHHHHHHcCCCeEEEEEeccccc
Confidence 7666653 345555554 666666666666655421 10 11788999999988888888867777767653
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=101.40 Aligned_cols=242 Identities=13% Similarity=0.138 Sum_probs=149.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC-------------CCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.++|..++..||+|+++|++++.+++... .| ++.++++. ++++||+|+.+++.
T Consensus 14 MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~~DlVIEAv~E 92 (307)
T COG1250 14 MGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKDADLVIEAVVE 92 (307)
T ss_pred hhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-HhccCCEEEEeccc
Confidence 9999999999988999999999776543322 22 34444554 67899999999999
Q ss_pred Cccchhhh-hcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccce
Q 022170 57 SSHQVLDV-YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 135 (301)
Q Consensus 57 ~~~~~~~v-~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l 135 (301)
+.+ ++.- +...+.+.+ +..-+-.++|+.++. ++++...+ +.+..+.||..+|-.-. +
T Consensus 93 ~le-vK~~vf~~l~~~~~----~~aIlASNTSsl~it---~ia~~~~r------per~iG~HFfNP~~~m~--------L 150 (307)
T COG1250 93 DLE-LKKQVFAELEALAK----PDAILASNTSSLSIT---ELAEALKR------PERFIGLHFFNPVPLMP--------L 150 (307)
T ss_pred cHH-HHHHHHHHHHhhcC----CCcEEeeccCCCCHH---HHHHHhCC------chhEEEEeccCCCCcce--------e
Confidence 877 5544 443344432 122223344555555 55555432 22223467777664332 2
Q ss_pred EEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 136 TFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 136 ~~~~gg---~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
+=++.| ++++++++..+.+.+++.++...+ -.+... |-+. ...+.|++.+.++...+++++-.++..+.
T Consensus 151 VEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D-~pGFi~----NRil---~~~~~eA~~l~~eGva~~e~ID~~~~~~~ 222 (307)
T COG1250 151 VEVIRGEKTSDETVERVVEFAKKIGKTPVVVKD-VPGFIV----NRLL---AALLNEAIRLLEEGVATPEEIDAAMRQGL 222 (307)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCCEeecC-CCceeh----HhHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhcc
Confidence 223333 688999999999999987755444 223333 3322 36669999999998899999999998765
Q ss_pred CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHH--HcCCCchHHHHHHHHHHHHHHCCCCCCchHH
Q 022170 213 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAK--EVGVDCPLTSQAQDIYAKLCENGHDSKDFSC 289 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~--~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~ 289 (301)
+.. .+|+. --|+. .++...+-++.+.+... ..-.+.|+.+...+.-....+.|.|..||..
T Consensus 223 G~p-----mGpf~--------l~D~~---GlD~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 223 GLP-----MGPFE--------LADLI---GLDVMLHIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred CCC-----ccHHH--------HHHHH---hHHHHHHHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 421 11110 01221 14555444444443222 1123457777777766777788999999975
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.9e-10 Score=96.04 Aligned_cols=162 Identities=14% Similarity=0.210 Sum_probs=113.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChh--hHHHHHhCCCCCC--CCH-HHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTK--ETP-FEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~--~~~~l~~~g~~~~--~s~-~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||..+|+.|.++||.|.+|+++.+ ..+...+.|+... .+. .+.+..+|+||+|||-.. +.+++....+.
T Consensus 14 iG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~--~~~~l~~l~~~---- 87 (279)
T COG0287 14 MGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEA--TEEVLKELAPH---- 87 (279)
T ss_pred HHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHH--HHHHHHHhccc----
Confidence 899999999999999877765554 4444444555432 233 567778999999999544 67777654432
Q ss_pred CCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCH--HHhhccceEEEecC---CHHHHHHH
Q 022170 76 NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGV--LAAEAGTLTFMVGG---SEDAYQAA 149 (301)
Q Consensus 76 ~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~--~~a~~g~l~~~~gg---~~~~~~~~ 149 (301)
.+++.+++|.+++.-.....+.+...+ ...|+. .|++|++ ....++..++++-+ +++.++++
T Consensus 88 -l~~g~iv~Dv~S~K~~v~~a~~~~~~~-----------~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~ 155 (279)
T COG0287 88 -LKKGAIVTDVGSVKSSVVEAMEKYLPG-----------DVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEV 155 (279)
T ss_pred -CCCCCEEEecccccHHHHHHHHHhccC-----------CCeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHH
Confidence 357889999999988877777665532 125665 6999984 44446666777755 35678889
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHHHHHHH
Q 022170 150 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180 (301)
Q Consensus 150 ~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~ 180 (301)
..+++.+|.+++++.+...-..+-.++.+-.
T Consensus 156 ~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH 186 (279)
T COG0287 156 KRLWEALGARLVEMDAEEHDRVMAAVSHLPH 186 (279)
T ss_pred HHHHHHcCCEEEEcChHHHhHHHHHHHHHHH
Confidence 9999999999988876555555555544433
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-10 Score=112.36 Aligned_cols=240 Identities=16% Similarity=0.050 Sum_probs=140.4
Q ss_pred CcHHHHHHHH-hCCCeEEEEcCChhhHHHHH-----------hC-------------CCCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLM-KAGYKMAVHDVNCNVMKMFS-----------DM-------------GVPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~-~~G~~V~~~dr~~~~~~~l~-----------~~-------------g~~~~~s~~e~~~~adiVi~~vp 55 (301)
||..+|..++ ++||+|++||++++..++.. +. .++.++++ +.+++||+||-|+|
T Consensus 315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~adlViEav~ 393 (699)
T TIGR02440 315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFKDVDIVIEAVF 393 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhccCCEEEEecc
Confidence 8999999998 58999999999998654431 11 24455666 46789999999999
Q ss_pred CCccchhh-hhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccc
Q 022170 56 SSSHQVLD-VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 134 (301)
Q Consensus 56 ~~~~~~~~-v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~ 134 (301)
.+.+ ++. ++.+.+.+++ +...+..++|+.++. ++++.+.. +.+..+.||..+|-.-...
T Consensus 394 E~l~-~K~~v~~~l~~~~~----~~~ilasnTS~l~i~---~la~~~~~------p~r~~g~HffnP~~~~~lV------ 453 (699)
T TIGR02440 394 EDLA-LKHQMVKDIEQECA----AHTIFASNTSSLPIG---QIAAAASR------PENVIGLHYFSPVEKMPLV------ 453 (699)
T ss_pred ccHH-HHHHHHHHHHhhCC----CCcEEEeCCCCCCHH---HHHHhcCC------cccEEEEecCCccccCceE------
Confidence 8876 554 4444444442 222233344455555 55555432 2323346676655332211
Q ss_pred eEEEec--CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 135 LTFMVG--GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 135 l~~~~g--g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
=++.| .++++++.+..+++.+++.++.+.+ ..+... |=+. ...++|++.+.+ .|++++++-.++. +.
T Consensus 454 -Evv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d-~pGfi~----nRl~---~~~~~Ea~~l~~-~G~~~~dID~a~~-~~ 522 (699)
T TIGR02440 454 -EVIPHAGTSEQTIATTVALAKKQGKTPIVVAD-KAGFYV----NRIL---APYMNEAARLLL-EGEPVEHIDKALV-KF 522 (699)
T ss_pred -EEeCCCCCCHHHHHHHHHHHHHcCCeEEEEcc-ccchHH----HHHH---HHHHHHHHHHHH-CCCCHHHHHHHHH-Hc
Confidence 12222 2788999999999999999999965 234333 3222 356699998887 4679999988874 32
Q ss_pred CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchH
Q 022170 213 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFS 288 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~ 288 (301)
+. + .+|+. . -|+ ..++...+-.+.+.+...+.-.+.++++...+--+...+.|.|..||.
T Consensus 523 G~-p----~GPf~------l--~D~---vGld~~~~i~~~l~~~~~~~~~~~~~l~~~v~~G~lG~ksg~GfY~y~ 582 (699)
T TIGR02440 523 GF-P----VGPIT------L--LDE---VGIDVGAKISPILEAELGERFKAPAVFDKLLSDDRKGRKNGKGFYLYG 582 (699)
T ss_pred CC-C----cCHHH------H--HHH---hchHHHHHHHHHHHHhcCCCCCCcHHHHHHHHCCCCcccCCcEEEeCC
Confidence 21 1 11110 0 011 224444444444333322222344555555555555566677777775
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-09 Score=95.98 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=108.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHH-hcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||..+|..|.+.|++|++||+++.. +.....|+....+.++++ .++|+||+|+|.. . +.+++.... ... ..+
T Consensus 47 mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~-~~~vl~~l~--~~~--l~~ 119 (304)
T PLN02256 47 FGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-S-TEAVLRSLP--LQR--LKR 119 (304)
T ss_pred HHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-H-HHHHHHhhh--hhc--cCC
Confidence 7999999999999999999998743 444456777777888876 4799999999954 4 788876531 111 235
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHH--hhccceEEEec-------CCHHHHHHH
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLA--AEAGTLTFMVG-------GSEDAYQAA 149 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~--a~~g~l~~~~g-------g~~~~~~~~ 149 (301)
+++++|.+++.-.....+.+.+.. +..|+ ..|++|.+.. ...+...++.. .+++..+.+
T Consensus 120 ~~iviDv~SvK~~~~~~~~~~l~~-----------~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 188 (304)
T PLN02256 120 STLFVDVLSVKEFPKNLLLQVLPE-----------EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERF 188 (304)
T ss_pred CCEEEecCCchHHHHHHHHHhCCC-----------CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHH
Confidence 679999999877666666655432 13454 4588876643 22233222322 267788999
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHHH
Q 022170 150 KPLFLSMGKNTIYCGGAGNGAAAKICN 176 (301)
Q Consensus 150 ~~ll~~~~~~~~~~g~~g~a~~~k~~~ 176 (301)
.++++.+|.+++.+.+...-..+-.++
T Consensus 189 ~~l~~~lGa~v~~~~~eeHD~~vA~iS 215 (304)
T PLN02256 189 LDIFEEEGCRMVEMSCEEHDRYAAGSQ 215 (304)
T ss_pred HHHHHHCCCEEEEeCHHHHhHHHHhhh
Confidence 999999999999887654444444443
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-10 Score=112.61 Aligned_cols=180 Identities=14% Similarity=0.144 Sum_probs=117.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCC-------------CCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||..||..++.+||+|++||++++..+.. .+.| ++.++++ +.+++||+||-|+|.
T Consensus 324 mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~E 402 (715)
T PRK11730 324 MGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFERVDVVVEAVVE 402 (715)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCCCEEEecccC
Confidence 89999999999999999999999876432 1112 4445566 457899999999998
Q ss_pred Cccchhhh-hcCCCccccCCCCCCCeE-EEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccc
Q 022170 57 SSHQVLDV-YNGPNGLLQGGNSVRPQL-LIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 134 (301)
Q Consensus 57 ~~~~~~~v-~~~~~~~l~~~~~~~~~i-vid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~ 134 (301)
+.+ ++.- +...+.++ +++.+ ..++|+.++. ++++.+.. +.+..+.||..+|-.-.-
T Consensus 403 ~l~-~K~~vf~~l~~~~-----~~~~ilasNTSsl~i~---~la~~~~~------p~r~~g~Hff~P~~~~~l------- 460 (715)
T PRK11730 403 NPK-VKAAVLAEVEQKV-----REDTILASNTSTISIS---LLAKALKR------PENFCGMHFFNPVHRMPL------- 460 (715)
T ss_pred cHH-HHHHHHHHHHhhC-----CCCcEEEEcCCCCCHH---HHHhhcCC------CccEEEEecCCcccccce-------
Confidence 876 5544 44434444 23323 3344444444 55555432 222234666655432211
Q ss_pred eEEEec--CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 135 LTFMVG--GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 135 l~~~~g--g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
+=++.| .++++++.+..+++.+++.++.+.+ ..+... |=+. ...++|++.+.++. .+++++-.++..+.
T Consensus 461 VEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d-~pGfv~----nRi~---~~~~~ea~~lv~~G-a~~e~ID~a~~~~~ 531 (715)
T PRK11730 461 VEVIRGEKTSDETIATVVAYASKMGKTPIVVND-CPGFFV----NRVL---FPYFAGFSQLLRDG-ADFRQIDKVMEKQF 531 (715)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCceEEecC-cCchhH----HHHH---HHHHHHHHHHHHcC-CCHHHHHHHHHhhC
Confidence 112223 2789999999999999999998865 333333 3332 24568999988765 99999988887654
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.6e-10 Score=108.61 Aligned_cols=153 Identities=15% Similarity=0.155 Sum_probs=104.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHh-cCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~-~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||..+|..|.+.|++|++|||+... +...+.|+....++++++. .+|+||+|+|. .. +.+++..... .. ..+
T Consensus 380 mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~-~~~vi~~l~~--~~--lk~ 452 (667)
T PLN02712 380 FGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LS-TEKVLKSLPF--QR--LKR 452 (667)
T ss_pred HHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HH-HHHHHHHHHH--hc--CCC
Confidence 7999999999999999999999654 4555668777778888775 58999999995 44 7777765321 11 235
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHHhhcc--ceE-----EEecCCHHHHH---H
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAG--TLT-----FMVGGSEDAYQ---A 148 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~a~~g--~l~-----~~~gg~~~~~~---~ 148 (301)
+++++|++++.-.....+.+.+.. +..|+ ..|++|.+.. ..| .+. .+++++.+..+ .
T Consensus 453 g~ivvDv~SvK~~~~~~~~~~l~~-----------~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~~~~~~ 520 (667)
T PLN02712 453 STLFVDVLSVKEFPRNLFLQHLPQ-----------DFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRVSRCDS 520 (667)
T ss_pred CcEEEECCCccHHHHHHHHHhccC-----------CCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchHHHHHH
Confidence 789999999985444444443321 25677 7899997754 111 111 34456555544 4
Q ss_pred HHHHHHhcCCCeEeeCCcchHHHH
Q 022170 149 AKPLFLSMGKNTIYCGGAGNGAAA 172 (301)
Q Consensus 149 ~~~ll~~~~~~~~~~g~~g~a~~~ 172 (301)
+..+++.+|.+++.+.+...-..+
T Consensus 521 l~~l~~~lGa~vv~ms~eeHD~~~ 544 (667)
T PLN02712 521 FLDIFAREGCRMVEMSCAEHDWHA 544 (667)
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHH
Confidence 458889999999988764444333
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-10 Score=110.43 Aligned_cols=239 Identities=15% Similarity=0.055 Sum_probs=141.5
Q ss_pred CcHHHHHHHH-hCCCeEEEEcCChhhHHHHH-----------hC-------------CCCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLM-KAGYKMAVHDVNCNVMKMFS-----------DM-------------GVPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~-~~G~~V~~~dr~~~~~~~l~-----------~~-------------g~~~~~s~~e~~~~adiVi~~vp 55 (301)
||..+|..++ .+|++|++||++++..+... +. .++.++++ +++++||+||-|+|
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~ 398 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFKHADVVIEAVF 398 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhccCCEEeeccc
Confidence 8999999999 88999999999988654431 11 14445566 56789999999999
Q ss_pred CCccchhhh-hcCCCccccCCCCCCCeEE-EEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhcc
Q 022170 56 SSSHQVLDV-YNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 133 (301)
Q Consensus 56 ~~~~~~~~v-~~~~~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g 133 (301)
.+.+ ++.- +...+.++ +++.++ .++|+.++. ++++.+.. +.+..+.||..+|-.-.-
T Consensus 399 E~~~-~K~~v~~~le~~~-----~~~~ilasnTS~l~i~---~la~~~~~------p~r~ig~Hff~P~~~~~l------ 457 (708)
T PRK11154 399 EDLA-LKQQMVAEVEQNC-----APHTIFASNTSSLPIG---QIAAAAAR------PEQVIGLHYFSPVEKMPL------ 457 (708)
T ss_pred ccHH-HHHHHHHHHHhhC-----CCCcEEEECCCCCCHH---HHHHhcCc------ccceEEEecCCccccCce------
Confidence 8876 5544 44334443 233333 334444444 55554432 232334666655432211
Q ss_pred ceEEEec--CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 134 TLTFMVG--GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 134 ~l~~~~g--g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
+=++.| .++++++.+..+++.+++.++.+.+ ..+....- +. ...++|++.+.++ |++++++-.++. +
T Consensus 458 -VEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d-~pGfi~nR----l~---~~~~~EA~~lv~e-Gv~~~dID~a~~-~ 526 (708)
T PRK11154 458 -VEVIPHAKTSAETIATTVALAKKQGKTPIVVRD-GAGFYVNR----IL---APYINEAARLLLE-GEPIEHIDAALV-K 526 (708)
T ss_pred -EEEECCCCCCHHHHHHHHHHHHHcCCceEEEec-cCcHHHHH----HH---HHHHHHHHHHHHc-CCCHHHHHHHHH-H
Confidence 112333 2788999999999999999988865 33333332 22 3566999999886 789999887775 3
Q ss_pred CCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchH
Q 022170 212 SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFS 288 (301)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~ 288 (301)
.+. + .+|.. . -| ...++...+-++.+.+...+.-.+.++++...+--+.+.+.|.|..||.
T Consensus 527 ~G~-p----~GPf~------~--~D---~~Gld~~~~i~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~g~GfY~y~ 587 (708)
T PRK11154 527 FGF-P----VGPIT------L--LD---EVGIDVGTKIIPILEAALGERFSAPAAFDKLLNDDRKGRKNGRGFYLYG 587 (708)
T ss_pred cCC-C----CCHHH------H--HH---HhhhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCCcccCCceEEECC
Confidence 221 1 11110 0 01 1224545544444444332222345555555554455666777777775
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-10 Score=110.27 Aligned_cols=181 Identities=15% Similarity=0.176 Sum_probs=118.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------C-------------CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M-------------GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||..||..++.+||+|++||++++..++..+ . .++.++++ +.+++||+||.++|.
T Consensus 324 mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~E 402 (714)
T TIGR02437 324 MGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDNVDIVVEAVVE 402 (714)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCCCEEEEcCcc
Confidence 8999999999999999999999987654321 1 24445566 456899999999998
Q ss_pred Cccchhh-hhcCCCccccCCCCCCCeEE-EEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccc
Q 022170 57 SSHQVLD-VYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 134 (301)
Q Consensus 57 ~~~~~~~-v~~~~~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~ 134 (301)
+.+ ++. ++.+.+.++ +++.++ .++|+.++. ++++.+.. +.+..+.||..+|-.-.-.
T Consensus 403 ~l~-~K~~vf~~l~~~~-----~~~~ilasnTS~l~i~---~ia~~~~~------p~r~ig~Hff~P~~~~~lv------ 461 (714)
T TIGR02437 403 NPK-VKAAVLAEVEQHV-----REDAILASNTSTISIS---LLAKALKR------PENFCGMHFFNPVHRMPLV------ 461 (714)
T ss_pred cHH-HHHHHHHHHHhhC-----CCCcEEEECCCCCCHH---HHHhhcCC------cccEEEEecCCCcccCceE------
Confidence 876 554 444444444 233333 334444444 55555432 2333346776654322111
Q ss_pred eEEEec--CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 135 LTFMVG--GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 135 l~~~~g--g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
=++.| .++++++.+..+++.+++.++.+.+ ..+... |=+. ...+.|++.+.+. |++++++-.++..+.
T Consensus 462 -Evv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d-~pGfi~----NRl~---~~~~~ea~~l~~e-G~~~~~ID~a~~~~~ 531 (714)
T TIGR02437 462 -EVIRGEKSSDETIATVVAYASKMGKTPIVVND-CPGFFV----NRVL---FPYFGGFSKLLRD-GADFVRIDKVMEKQF 531 (714)
T ss_pred -eecCCCCCCHHHHHHHHHHHHHcCCEEEEeCC-cccchH----HHHH---HHHHHHHHHHHHC-CCCHHHHHHHHHhcC
Confidence 12222 2688999999999999999999975 233333 4333 2456899999875 599999988887654
Q ss_pred C
Q 022170 213 A 213 (301)
Q Consensus 213 ~ 213 (301)
+
T Consensus 532 G 532 (714)
T TIGR02437 532 G 532 (714)
T ss_pred C
Confidence 3
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-09 Score=92.48 Aligned_cols=184 Identities=15% Similarity=0.191 Sum_probs=115.1
Q ss_pred CcHHHHHHHHhCCC---e-EEEEcC-ChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKAGY---K-MAVHDV-NCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~G~---~-V~~~dr-~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
||.+++..|.++|+ + +++++| ++++.+.+.+. ++..+.+..++++++|+||+|+|+. . .++++.+....+
T Consensus 15 mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~-~~~v~~~l~~~~-- 90 (245)
T PRK07634 15 MAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-A-HEELLAELSPLL-- 90 (245)
T ss_pred HHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-H-HHHHHHHHHhhc--
Confidence 78999999998873 3 778887 57788777653 6767778889999999999999954 4 788886543322
Q ss_pred CCCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEE--EecCCHHHHHHHHH
Q 022170 75 GNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTF--MVGGSEDAYQAAKP 151 (301)
Q Consensus 75 ~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~--~~gg~~~~~~~~~~ 151 (301)
++++||.+ .+++.++ +.+.+.. + .......|.+.... ..+...+ ...++++..+.++.
T Consensus 91 ----~~~~vis~~~gi~~~~---l~~~~~~-------~---~~v~r~~Pn~a~~v--~~g~~~~~~~~~~~~~~~~~v~~ 151 (245)
T PRK07634 91 ----SNQLVVTVAAGIGPSY---LEERLPK-------G---TPVAWIMPNTAAEI--GKSISLYTMGQSVNETHKETLQL 151 (245)
T ss_pred ----cCCEEEEECCCCCHHH---HHHHcCC-------C---CeEEEECCcHHHHH--hcCCeEEeeCCCCCHHHHHHHHH
Confidence 23466665 5566663 3333321 0 01234566544332 2342222 23457888999999
Q ss_pred HHHhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 152 LFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 152 ll~~~~~~~~~~g~--~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
+|+.+|..++ +.+ .....++--+...+.+..+. .+...+.+.|++.++..+++...
T Consensus 152 lf~~~G~~~~-~~e~~~~~~~a~~gs~pa~~~~~~~---a~~~~~~~~Gl~~~~a~~~~~~~ 209 (245)
T PRK07634 152 ILKGIGTSQL-CTEEEVHQLTAVTGSAPAFLYYFAE---SLIEATKSYGVDEETAKHLVIQM 209 (245)
T ss_pred HHHhCCCEEE-ECHHHcchHHhhhcchHHHHHHHHH---HHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999998664 543 22222222222223322223 33455788899999988887654
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-08 Score=86.26 Aligned_cols=240 Identities=18% Similarity=0.189 Sum_probs=145.6
Q ss_pred CcHHHHHHHHhCC----CeEEEEcCChhhHHHHH-hCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAG----YKMAVHDVNCNVMKMFS-DMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G----~~V~~~dr~~~~~~~l~-~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||.+|+..|.++| .+|++.+|++++.+.+. +.|...+++..+++..+|+||+||. |+. +.+|+...++ .
T Consensus 12 Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK-Pq~-~~~vl~~l~~-~--- 85 (266)
T COG0345 12 MGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK-PQD-LEEVLSKLKP-L--- 85 (266)
T ss_pred HHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC-hHh-HHHHHHHhhc-c---
Confidence 8999999999999 68999999999997444 4576667788899999999999999 677 9999987655 2
Q ss_pred CCCCCeEEE-EeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHHhhccceEEEecC--CHHHHHHHHH
Q 022170 76 NSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKP 151 (301)
Q Consensus 76 ~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ 151 (301)
.++++|| -..+++.++.+ +.+.. ..++ -.|.. +.....|...+..+. +++..+.+..
T Consensus 86 --~~~~lvISiaAGv~~~~l~---~~l~~------------~~vvR~MPNt--~a~vg~g~t~i~~~~~~~~~~~~~v~~ 146 (266)
T COG0345 86 --TKDKLVISIAAGVSIETLE---RLLGG------------LRVVRVMPNT--PALVGAGVTAISANANVSEEDKAFVEA 146 (266)
T ss_pred --cCCCEEEEEeCCCCHHHHH---HHcCC------------CceEEeCCCh--HHHHcCcceeeecCccCCHHHHHHHHH
Confidence 1344555 44677766443 33321 1122 12322 333445553333332 5677789999
Q ss_pred HHHhcCCCeEeeCCc--chHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHhhcC-CCccccccCCCCCCc
Q 022170 152 LFLSMGKNTIYCGGA--GNGAAAKICNNLTMAVSMLGVSEAL-TLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGV 227 (301)
Q Consensus 152 ll~~~~~~~~~~g~~--g~a~~~k~~~N~~~~~~~~~~~E~~-~l~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 227 (301)
+|+.+|. ++.+.+. ....++-=..-.+. ..+.|++ ..+.+.|++.++..++..... |..-+......-|..
T Consensus 147 l~~~~G~-v~~v~E~~~da~TaisGSgPAyv----~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~ 221 (266)
T COG0345 147 LLSAVGK-VVEVEESLMDAVTALSGSGPAYV----FLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLESGEHPAE 221 (266)
T ss_pred HHHhcCC-eEEechHHhhHHHHHhcCCHHHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 9999996 5566542 12222221222222 2233433 456788999999988877653 111111111111111
Q ss_pred ccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCC
Q 022170 228 MEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 281 (301)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 281 (301)
+ -++-.+|+.+...+.++++ +.++..-+.+++.+.++++.+.|
T Consensus 222 L----r~~VtSPGGtTiagl~~le-------~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 222 L----RDQVTSPGGTTIAGLRVLE-------EDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred H----HHhCcCCCchHHHHHHHHH-------HhChHHHHHHHHHHHHHHHHHhc
Confidence 1 1222345555445544444 66787788888888888876654
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-09 Score=105.32 Aligned_cols=158 Identities=15% Similarity=0.187 Sum_probs=114.4
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhHHHHHhCCCC--CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~g~~--~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||.++++.|.++| ++|++|||++++.+.+.+.|+. ...++.++++++|+||+|+|.. . +.+++......+
T Consensus 14 mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~-~~~vl~~l~~~~---- 87 (735)
T PRK14806 14 IGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-A-MEKVLADLKPLL---- 87 (735)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-H-HHHHHHHHHHhc----
Confidence 7999999999999 4899999999998888877764 4557888889999999999954 4 788876544333
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceE-EecccCCCHHH--------hhccceEEEec---CCHH
Q 022170 77 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM-LDAPVSGGVLA--------AEAGTLTFMVG---GSED 144 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~pv~g~~~~--------a~~g~l~~~~g---g~~~ 144 (301)
.++.+++|+++++....+.+.+.+... .++| ...|++|++.. ...+..++++. ++++
T Consensus 88 -~~~~ii~d~~svk~~~~~~l~~~~~~~----------~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~ 156 (735)
T PRK14806 88 -SEHAIVTDVGSTKGNVVDAARAVFGEL----------PAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPA 156 (735)
T ss_pred -CCCcEEEEcCCCchHHHHHHHHhcccc----------CCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHH
Confidence 345799999999988877776665320 1444 46788866531 11233344443 4677
Q ss_pred HHHHHHHHHHhcCCCeEeeCCcchHHHHHHH
Q 022170 145 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC 175 (301)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~ 175 (301)
.++.++++|+.+|..++++.+...-..+-++
T Consensus 157 ~~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~ 187 (735)
T PRK14806 157 ALARVDRLWRAVGADVLHMDVAHHDEVLAAT 187 (735)
T ss_pred HHHHHHHHHHHcCCEEEEcCHHHHhHHHHHh
Confidence 8899999999999988888764444444333
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-08 Score=89.47 Aligned_cols=247 Identities=13% Similarity=0.129 Sum_probs=136.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC--------------CCCCHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--------------TKETPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~--------------~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
||+.+|..|.++||+|++|+|+ +..+.+.+.|.. ..+++++ ....|+||+|++..+ +.+++.
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~--~~~~l~ 77 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ--TEEAAA 77 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh--HHHHHH
Confidence 7999999999999999999997 667777765521 1223444 567999999999654 788876
Q ss_pred CCCccccCCCCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhh-ccceEEEecCC--
Q 022170 67 GPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE-AGTLTFMVGGS-- 142 (301)
Q Consensus 67 ~~~~~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~-~g~l~~~~gg~-- 142 (301)
...+.+. ++.+|+-. .++... +.+.+.+.... ...++.+..+-..+ |.... .+.-.+.+|..
T Consensus 78 ~l~~~l~-----~~~~iv~~qNG~g~~--~~l~~~~~~~~------v~~g~~~~~~~~~~-pg~v~~~~~~~~~iG~~~~ 143 (293)
T TIGR00745 78 LLLPLIG-----KNTKVLFLQNGLGHE--ERLRELLPARR------ILGGVVTHGAVREE-PGVVHHAGLGATKIGDYVG 143 (293)
T ss_pred HhHhhcC-----CCCEEEEccCCCCCH--HHHHHHhCccC------EEEEEEEEeeEEcC-CcEEEEeccccEEEecCCC
Confidence 6555442 23344444 455443 23444332210 00011122111111 11111 11112344432
Q ss_pred -HHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHcCCC
Q 022170 143 -EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL---------------------TMAVSMLGVSEALTLGQSLGIS 200 (301)
Q Consensus 143 -~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~---------------------~~~~~~~~~~E~~~l~~~~G~~ 200 (301)
.+..+.+..+|+..+.++....++-...-.|++.|. ........+.|+..++++.|++
T Consensus 144 ~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~ 223 (293)
T TIGR00745 144 ENEAVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVD 223 (293)
T ss_pred chHHHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCC
Confidence 234566777777766665555556555566665444 2234567789999999999975
Q ss_pred --HHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022170 201 --ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 277 (301)
Q Consensus 201 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 277 (301)
.+.+.+.+..-..... .++ +.+. .|+..+-. .+..-=...++++++++|+++|..+.++++++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~--~~~---sSm~------~D~~~gr~-tEid~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~ 290 (293)
T TIGR00745 224 LPDDEVEELVRAVIRMTA--ENT---SSML------QDLLRGRR-TEIDAINGAVVRLAEKLGIDAPVNRTLYALLKAL 290 (293)
T ss_pred CCHHHHHHHHHHHHhcCC--CCC---ChHH------HHHHcCCc-chHHHhccHHHHHHHHcCCCCChHHHHHHHHHHh
Confidence 3333333322110000 000 0011 12221111 1222234689999999999999999999887643
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-08 Score=89.95 Aligned_cols=245 Identities=12% Similarity=0.094 Sum_probs=137.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-------------CCCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------------KETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-------------~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
||+.+|..|.++||+|++|.|++. +.+.+.|... ..+..+....+|+||+|++..+ +.+++..
T Consensus 16 iG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~--~~~~~~~ 91 (313)
T PRK06249 16 IGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTTA--NALLAPL 91 (313)
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCCC--hHhHHHH
Confidence 689999999999999999999863 4455544221 1112234567999999999654 6777655
Q ss_pred CCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCH--HHhhccceEEE-ecC-C-
Q 022170 68 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV--LAAEAGTLTFM-VGG-S- 142 (301)
Q Consensus 68 ~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~--~~a~~g~l~~~-~gg-~- 142 (301)
..+.+. +.+.++.-..+... .+.+.+.+.+.. ...++.++.+...+.. .....|.+.+- ..+ +
T Consensus 92 l~~~~~----~~~~iv~lqNG~~~--~e~l~~~~~~~~------v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~ 159 (313)
T PRK06249 92 IPQVAA----PDAKVLLLQNGLGV--EEQLREILPAEH------LLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAA 159 (313)
T ss_pred HhhhcC----CCCEEEEecCCCCc--HHHHHHHCCCCc------EEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcc
Confidence 444442 23333333344442 234444443210 0011333333222211 01112332221 123 2
Q ss_pred ----HHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHc
Q 022170 143 ----EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT---------------------MAVSMLGVSEALTLGQSL 197 (301)
Q Consensus 143 ----~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~---------------------~~~~~~~~~E~~~l~~~~ 197 (301)
.+..+.+..+|+..+..+....++-...-.|++.|.. .......+.|+..++++.
T Consensus 160 ~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~ 239 (313)
T PRK06249 160 DDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQGAAAC 239 (313)
T ss_pred cchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHHHHHhc
Confidence 3556677888888787766666666666666665532 233567789999999999
Q ss_pred CCC-----HHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 022170 198 GIS-----ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 272 (301)
Q Consensus 198 G~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~ 272 (301)
|++ .+.+++......... +.+. .|+..+.. .+.--=...++++++++|+++|..+.+++
T Consensus 240 Gi~~~~~~~~~~~~~~~~~~~~~---------sSM~------qD~~~gr~-tEid~i~G~vv~~a~~~Gi~~P~~~~l~~ 303 (313)
T PRK06249 240 GHTLPEGYADHMLAVTERMPDYR---------PSMY------HDFEEGRP-LELEAIYANPLAAARAAGCAMPRVEMLYQ 303 (313)
T ss_pred CCCCChhHHHHHHHHhhcCCCCC---------ChHH------HHHHCCCc-ccHHHHhhHHHHHHHHhCCCCcHHHHHHH
Confidence 986 222333322211100 1111 12222211 12222346899999999999999999998
Q ss_pred HHHHH
Q 022170 273 IYAKL 277 (301)
Q Consensus 273 ~~~~a 277 (301)
+++..
T Consensus 304 ~l~~~ 308 (313)
T PRK06249 304 ALEFL 308 (313)
T ss_pred HHHHH
Confidence 87654
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.6e-10 Score=108.33 Aligned_cols=176 Identities=16% Similarity=0.139 Sum_probs=115.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------C-------------CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M-------------GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||..||..++.+|++|++||++++.+++..+ . .++.+++++ .+++||+||-++|.
T Consensus 346 MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aDlViEAv~E 424 (737)
T TIGR02441 346 MGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKNADMVIEAVFE 424 (737)
T ss_pred hHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccCCeehhhccc
Confidence 8999999999999999999999988654322 1 244456664 57899999999999
Q ss_pred Cccchhhhh-cCCCccccCCCCCCCeE-EEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccc
Q 022170 57 SSHQVLDVY-NGPNGLLQGGNSVRPQL-LIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 134 (301)
Q Consensus 57 ~~~~~~~v~-~~~~~~l~~~~~~~~~i-vid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~ 134 (301)
+.+ ++.-+ .+.+.++ +++.+ ..++|+.++. ++++.+.. +.+..+.||..+|-.-.-
T Consensus 425 ~l~-~K~~vf~~l~~~~-----~~~~ilasNTSsl~i~---~la~~~~~------p~r~ig~Hff~P~~~m~L------- 482 (737)
T TIGR02441 425 DLS-LKHKVIKEVEAVV-----PPHCIIASNTSALPIK---DIAAVSSR------PEKVIGMHYFSPVDKMQL------- 482 (737)
T ss_pred cHH-HHHHHHHHHHhhC-----CCCcEEEEcCCCCCHH---HHHhhcCC------ccceEEEeccCCcccCce-------
Confidence 877 55544 3334444 23333 3345555555 55555432 222234666655432211
Q ss_pred eEEEec--CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022170 135 LTFMVG--GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 208 (301)
Q Consensus 135 l~~~~g--g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 208 (301)
+=++.| .++++++.+..+++.+++.++.+++ ..+... |=+. ...++|++.+.+. |++++++-.++
T Consensus 483 vEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d-~pGFi~----NRi~---~~~~~ea~~lv~e-Gv~~~~ID~a~ 549 (737)
T TIGR02441 483 LEIITHDGTSKDTLASAVAVGLKQGKVVIVVKD-GPGFYT----TRCL---GPMLAEVIRLLQE-GVDPKKLDKLT 549 (737)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECC-cCCchH----HHHH---HHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 112222 3788999999999999999999875 233333 3332 3567999988865 68999998875
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-08 Score=90.34 Aligned_cols=181 Identities=15% Similarity=0.095 Sum_probs=113.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH-HHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~-~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||.++|.+|.+.|++|.+++++.++. +...+.|.... ++.++++.||+|++++|+.. ..+++.. .+.+. ..+
T Consensus 28 mG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~--~~~V~~~--~I~~~--Lk~ 100 (330)
T PRK05479 28 QGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEV--QAEVYEE--EIEPN--LKE 100 (330)
T ss_pred HHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHH--HHHHHHH--HHHhc--CCC
Confidence 79999999999999999988765544 33445577654 89999999999999999654 5777721 23332 235
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCce-EEecccCCCHH-----HhhccceEEE-ecCC--HHHHHHHH
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV-MLDAPVSGGVL-----AAEAGTLTFM-VGGS--EDAYQAAK 150 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~pv~g~~~-----~a~~g~l~~~-~gg~--~~~~~~~~ 150 (301)
+++++.+++......+. ..+. ++. +.-+|-..+.. ....|...++ +..| .+..+.+.
T Consensus 101 g~iL~~a~G~~i~~~~~---~p~~-----------~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~ 166 (330)
T PRK05479 101 GAALAFAHGFNIHFGQI---VPPA-----------DVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLAL 166 (330)
T ss_pred CCEEEECCCCChhhcee---ccCC-----------CCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHH
Confidence 67888888877664321 1110 122 22335443331 1234543444 5666 78889999
Q ss_pred HHHHhcCCCeE-----eeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 022170 151 PLFLSMGKNTI-----YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 203 (301)
Q Consensus 151 ~ll~~~~~~~~-----~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~ 203 (301)
.+++.+|.... .+.+.-.-..+.- +..+......++..++......|.+|+.
T Consensus 167 ~l~~aiG~~~~g~~~ttf~~e~~~dl~ge-q~vl~gg~~~l~~~~~e~l~eaG~~pe~ 223 (330)
T PRK05479 167 AYAKGIGGTRAGVIETTFKEETETDLFGE-QAVLCGGLTELIKAGFETLVEAGYQPEM 223 (330)
T ss_pred HHHHHcCCCccceeeeeecccccccchhh-HHHHhhHHHHHHHHHHHHHHHcCCCHHH
Confidence 99999998653 2222110001111 2233334446667778888999999885
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=99.80 Aligned_cols=157 Identities=15% Similarity=0.154 Sum_probs=107.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHH-hcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||..+|..|.+.|++|++|||+... +...+.|+....++.+++ .++|+|++|+|. .. +.+++.+.. .+. ..+
T Consensus 63 mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~-~~~vl~~l~--~~~--l~~ 135 (667)
T PLN02712 63 YGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSI-IS-TENVLKSLP--LQR--LKR 135 (667)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HH-HHHHHHhhh--hhc--CCC
Confidence 7999999999999999999998554 455566877777888865 569999999995 45 788886542 111 235
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHH--HhhccceEEEec---CC-H---HHHHHH
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVL--AAEAGTLTFMVG---GS-E---DAYQAA 149 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~--~a~~g~l~~~~g---g~-~---~~~~~~ 149 (301)
+++|+|++++.....+.+.+.+.+ ++.|+ ..|++|.+. ....+...++.+ ++ + +..+.+
T Consensus 136 g~iVvDv~SvK~~~~~~l~~~l~~-----------~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (667)
T PLN02712 136 NTLFVDVLSVKEFAKNLLLDYLPE-----------DFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSF 204 (667)
T ss_pred CeEEEECCCCcHHHHHHHHHhcCC-----------CCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHH
Confidence 789999999887666555555432 13454 469998773 223343344442 33 2 235567
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHH
Q 022170 150 KPLFLSMGKNTIYCGGAGNGAAAKIC 175 (301)
Q Consensus 150 ~~ll~~~~~~~~~~g~~g~a~~~k~~ 175 (301)
..+++.+|.+++.+.+...-..+-.+
T Consensus 205 ~~l~~~lGa~v~~ms~eeHD~~~A~v 230 (667)
T PLN02712 205 LEVFEREGCKMVEMSCTEHDKYAAES 230 (667)
T ss_pred HHHHHHcCCEEEEeCHHHHHHHHHHH
Confidence 79999999999988764444444333
|
|
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.6e-09 Score=75.14 Aligned_cols=93 Identities=23% Similarity=0.222 Sum_probs=75.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 022170 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 246 (301)
Q Consensus 167 g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (301)
..|+.+|++.|.+.++.+++++|+..+|++.|+|..++.++++...-.+. ....| .++|...++
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~~--~~~~p--------------g~g~GG~Cl 65 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIGP--HYLRP--------------GPGFGGSCL 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTTS--SS-S---------------SSS--SSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCccccc--ccCCC--------------CCCCCCcch
Confidence 46899999999999999999999999999999999999999997642110 01111 235778899
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 022170 247 AKDLNLALASAKEVGVDCPLTSQAQDIYA 275 (301)
Q Consensus 247 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 275 (301)
.||...+...+++.|.+.++++++.++.+
T Consensus 66 pkD~~~L~~~~~~~g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 66 PKDPYALIYLAKELGYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 99999999999999999999999887654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-10 Score=86.73 Aligned_cols=94 Identities=14% Similarity=0.101 Sum_probs=61.2
Q ss_pred CcHHHHHHHHhCCCeEEE-EcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAV-HDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~-~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
+|++|++.|.++||+|.. |+|+++..+.+.+. +.....++.+++..+|+||++|||+. +.+++.++.... ...
T Consensus 21 VG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda--I~~va~~La~~~---~~~ 95 (127)
T PF10727_consen 21 VGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA--IAEVAEQLAQYG---AWR 95 (127)
T ss_dssp CCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH--HHHHHHHHHCC-----S-
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH--HHHHHHHHHHhc---cCC
Confidence 588999999999999875 68999888777654 44455678888999999999999875 888887653221 124
Q ss_pred CCeEEEEeCCCCHHHHHHHHH
Q 022170 79 RPQLLIDSSTIDPQTSRNISA 99 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~ 99 (301)
++++|++||+..+....+..+
T Consensus 96 ~g~iVvHtSGa~~~~vL~p~~ 116 (127)
T PF10727_consen 96 PGQIVVHTSGALGSDVLAPAR 116 (127)
T ss_dssp TT-EEEES-SS--GGGGHHHH
T ss_pred CCcEEEECCCCChHHhhhhHH
Confidence 678999999988876655544
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.6e-10 Score=92.69 Aligned_cols=142 Identities=17% Similarity=0.276 Sum_probs=85.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------C-------------CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M-------------GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.++|..++.+||+|++||++++..+...+ . .+..+++++++. +||+||-|+|.
T Consensus 10 mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~adlViEai~E 88 (180)
T PF02737_consen 10 MGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DADLVIEAIPE 88 (180)
T ss_dssp HHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TESEEEE-S-S
T ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hhheehhhccc
Confidence 8999999999999999999999987644322 1 245678888887 99999999998
Q ss_pred Cccchhh-hhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccce
Q 022170 57 SSHQVLD-VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 135 (301)
Q Consensus 57 ~~~~~~~-v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l 135 (301)
+.. ++. ++...+.+++ +...+..++|+.++. ++++.+.. +.+..+.||..+|-.- + -.
T Consensus 89 ~l~-~K~~~~~~l~~~~~----~~~ilasnTSsl~i~---~la~~~~~------p~R~ig~Hf~~P~~~~-~------lV 147 (180)
T PF02737_consen 89 DLE-LKQELFAELDEICP----PDTILASNTSSLSIS---ELAAALSR------PERFIGMHFFNPPHLM-P------LV 147 (180)
T ss_dssp SHH-HHHHHHHHHHCCS-----TTSEEEE--SSS-HH---HHHTTSST------GGGEEEEEE-SSTTT---------EE
T ss_pred cHH-HHHHHHHHHHHHhC----CCceEEecCCCCCHH---HHHhccCc------CceEEEEecccccccC-c------eE
Confidence 866 544 4444344432 222333444555554 55554432 2222346676544321 1 11
Q ss_pred EEEecC--CHHHHHHHHHHHHhcCCCeEeeC
Q 022170 136 TFMVGG--SEDAYQAAKPLFLSMGKNTIYCG 164 (301)
Q Consensus 136 ~~~~gg--~~~~~~~~~~ll~~~~~~~~~~g 164 (301)
=++.+. +++.++.+..+++.+++.++.+.
T Consensus 148 Evv~~~~T~~~~~~~~~~~~~~~gk~pv~v~ 178 (180)
T PF02737_consen 148 EVVPGPKTSPETVDRVRALLRSLGKTPVVVK 178 (180)
T ss_dssp EEEE-TTS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 133333 78899999999999999888764
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.3e-08 Score=89.50 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=105.0
Q ss_pred CcHHHHHHHHh-CCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMK-AGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~-~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||..+|+.|.+ .|++|++||++.+ ...++.+.+.+||+||+|+|-.. +.+++.+...+.+. .++
T Consensus 16 iGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~~--~~~~l~~l~~~~~~--l~~ 80 (370)
T PRK08818 16 YGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIRH--TAALIEEYVALAGG--RAA 80 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHHH--HHHHHHHHhhhhcC--CCC
Confidence 79999999986 4899999998511 23467888999999999999544 77777665443211 246
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHHH-hhccceEEEecC-CHHHHHHHHHHHHhc
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLA-AEAGTLTFMVGG-SEDAYQAAKPLFLSM 156 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~-a~~g~l~~~~gg-~~~~~~~~~~ll~~~ 156 (301)
+++|.|.+++.....+.+.+. +..|+. .|++|++.. ..++..++++.+ +.+..+.++.+++.+
T Consensus 81 ~~iVtDVgSvK~~i~~~~~~~--------------~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~~~ 146 (370)
T PRK08818 81 GQLWLDVTSIKQAPVAAMLAS--------------QAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCSAL 146 (370)
T ss_pred CeEEEECCCCcHHHHHHHHhc--------------CCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHHHc
Confidence 789999999987665554211 134654 699988643 345666777765 345578899999999
Q ss_pred CCCeEeeCCcchHHHHHHHH
Q 022170 157 GKNTIYCGGAGNGAAAKICN 176 (301)
Q Consensus 157 ~~~~~~~g~~g~a~~~k~~~ 176 (301)
|.+++.+.+...-..+-+++
T Consensus 147 Ga~v~~~~aeeHD~~~A~vS 166 (370)
T PRK08818 147 QAECVYATPEHHDRVMALVQ 166 (370)
T ss_pred CCEEEEcCHHHHHHHHHHHH
Confidence 99999887766666666664
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.9e-08 Score=83.32 Aligned_cols=236 Identities=10% Similarity=0.055 Sum_probs=137.9
Q ss_pred CcHHHHHHHHhCCC----eEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKAGY----KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~G~----~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||++|+..|.++|+ ++++++|++++. +.....++.++++++|+||+|+| +.. +++++.+..+.+
T Consensus 14 mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavk-p~~-~~~vl~~i~~~l---- 81 (260)
T PTZ00431 14 MGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVK-PDL-AGKVLLEIKPYL---- 81 (260)
T ss_pred HHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeC-HHH-HHHHHHHHHhhc----
Confidence 89999999999872 499999987652 33455688888889999999999 565 899987654433
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecC---CHHHHHHHHHHH
Q 022170 77 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLF 153 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll 153 (301)
.++.+|.++++++.++.+++. ... .. -++++ |- .|.....+. ++++.+ +++..+.++.+|
T Consensus 82 -~~~~iIS~~aGi~~~~l~~~~---~~~----~~----vvr~m--Pn--~p~~~g~g~-t~i~~~~~~~~~~~~~v~~l~ 144 (260)
T PTZ00431 82 -GSKLLISICGGLNLKTLEEMV---GVE----AK----IVRVM--PN--TPSLVGQGS-LVFCANNNVDSTDKKKVIDIF 144 (260)
T ss_pred -cCCEEEEEeCCccHHHHHHHc---CCC----Ce----EEEEC--CC--chhHhccee-EEEEeCCCCCHHHHHHHHHHH
Confidence 234688899999988666542 110 00 02222 21 222333343 444433 456788999999
Q ss_pred HhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCccccccCCCCCCcccC
Q 022170 154 LSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEG 230 (301)
Q Consensus 154 ~~~~~~~~~~g~--~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 230 (301)
+.+|. ++.+.+ ...+.++--+...+.+..+..+ ...+.+.|++.++..+++.... |..-+......-|..
T Consensus 145 ~~~G~-~~~v~E~~~d~~ta~~gsgPA~~~~~~~al---~~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~--- 217 (260)
T PTZ00431 145 SACGI-IQEIKEKDMDIATAISGCGPAYVFLFIESL---IDAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQ--- 217 (260)
T ss_pred HhCCc-EEEEChHHcchhhhhcCCHHHHHHHHHHHH---HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH---
Confidence 99996 445543 2222222222233333333333 3556788999999888877552 111111100000000
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHC
Q 022170 231 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 280 (301)
Q Consensus 231 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 280 (301)
+.++--+|+.+. ...++..++.|+.--+.+++.+.++++.+.
T Consensus 218 -l~~~v~spgG~T-------~~gl~~le~~g~~~~~~~a~~aa~~r~~~l 259 (260)
T PTZ00431 218 -LKDDVCSPGGIT-------IVGLYTLEKHAFKYTVMDAVESACQKSKSM 259 (260)
T ss_pred -HHHhCCCCChHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHhc
Confidence 111122333222 234455567788878888888888777653
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-07 Score=80.44 Aligned_cols=172 Identities=13% Similarity=0.174 Sum_probs=108.3
Q ss_pred CCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeC-CCC
Q 022170 13 GYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSS-TID 90 (301)
Q Consensus 13 G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s-t~~ 90 (301)
-++|++|+|++++.+.+.+. |+..+.+..++++++|+||+||+ |.+ +.+++......+ .++++||.+. +++
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~-i~~vl~~l~~~~-----~~~~~ivS~~agi~ 81 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQD-LEEVLSELKSEK-----GKDKLLISIAAGVT 81 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHH-HHHHHHHHhhhc-----cCCCEEEEecCCCC
Confidence 37899999999999888664 88788899999999999999999 676 899987654322 1345677664 555
Q ss_pred HHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHHhhccceEEEecC--CHHHHHHHHHHHHhcCCCeEeeCC--
Q 022170 91 PQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGG-- 165 (301)
Q Consensus 91 p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~~~~~~~~g~-- 165 (301)
.+. +.+.+.. +...+ -.|.. +.....|...+..+. +++..+.++.+|+.+|. ++.+.+
T Consensus 82 ~~~---l~~~~~~-----------~~~ivR~mPn~--~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~-~~~v~E~~ 144 (245)
T TIGR00112 82 LEK---LSQLLGG-----------TRRVVRVMPNT--PAKVGAGVTAIAANANVSEEDRALVLALFKAVGE-VVELPEAL 144 (245)
T ss_pred HHH---HHHHcCC-----------CCeEEEECCCh--HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCC-EEEECHHH
Confidence 553 3333321 01111 22322 223334542333332 45667889999999996 445544
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 166 AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 166 ~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
......+--+...+.+..+..+. ..+.+.|+++++..+++...
T Consensus 145 ~~~~talsgsgPA~~~~~~~al~---~~~v~~Gl~~~~A~~lv~~~ 187 (245)
T TIGR00112 145 MDAVTALSGSGPAYVFLFIEALA---DAGVKQGLPRELALELAAQT 187 (245)
T ss_pred cchHHhhccCcHHHHHHHHHHHH---HHHHHcCCCHHHHHHHHHHH
Confidence 33333333344455544444443 45677899999988887765
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-07 Score=83.07 Aligned_cols=184 Identities=11% Similarity=0.079 Sum_probs=105.7
Q ss_pred CcHHHHHHHHhCC----CeEEEEcCCh-hhHHHHHhC--CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcccc
Q 022170 1 MGFRMASNLMKAG----YKMAVHDVNC-NVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQ 73 (301)
Q Consensus 1 mG~~lA~~L~~~G----~~V~~~dr~~-~~~~~l~~~--g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~ 73 (301)
||++++..|.++| ++|++|+|++ ++.+.+... +...+.+..++++++|+||+|+| +.. +++++.+....+
T Consensus 12 mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~-~~~vl~~l~~~l- 88 (277)
T PRK06928 12 MADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLA-VLPLLKDCAPVL- 88 (277)
T ss_pred HHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHH-HHHHHHHHHhhc-
Confidence 7999999999998 7899999864 445555443 23446788888999999999999 555 888886544333
Q ss_pred CCCCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecC--CHHHHHHHH
Q 022170 74 GGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAK 150 (301)
Q Consensus 74 ~~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~ 150 (301)
.+++++|.. .+++.+. +.+.+... + -++. .|.. +.....|...+..+. +++..+.++
T Consensus 89 ----~~~~~ivS~~aGi~~~~---l~~~~~~~-----~----vvR~--MPN~--~~~~g~g~t~~~~~~~~~~~~~~~v~ 148 (277)
T PRK06928 89 ----TPDRHVVSIAAGVSLDD---LLEITPGL-----Q----VSRL--IPSL--TSAVGVGTSLVAHAETVNEANKSRLE 148 (277)
T ss_pred ----CCCCEEEEECCCCCHHH---HHHHcCCC-----C----EEEE--eCcc--HHHHhhhcEEEecCCCCCHHHHHHHH
Confidence 234455544 5566663 33333210 0 0122 2322 233344542333332 456778899
Q ss_pred HHHHhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHhhc
Q 022170 151 PLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSL-GISASTLTKILNSS 211 (301)
Q Consensus 151 ~ll~~~~~~~~~~g~--~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~-G~~~~~~~~~~~~~ 211 (301)
.+|+.+|. ++.+.+ .....++--+.-.+.+..+..+. .-+.+. |++.++..+++...
T Consensus 149 ~l~~~~G~-~~~v~E~~~d~~tal~gsgPA~~~~~~~al~---~a~~~~ggl~~~~a~~l~~~~ 208 (277)
T PRK06928 149 ETLSHFSH-VMTIREENMDIASNLTSSSPGFIAAIFEEFA---EAAVRNSSLSDEEAFQFLNFA 208 (277)
T ss_pred HHHHhCCC-EEEEchhhCceeeeeecCHHHHHHHHHHHHH---HHHHHhCCCCHHHHHHHHHHH
Confidence 99999996 344533 11111111111222222222222 334566 79999888877654
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-09 Score=77.93 Aligned_cols=80 Identities=21% Similarity=0.298 Sum_probs=62.5
Q ss_pred CcHHHHHHHHhCC---CeEEEE-cCChhhHHHHHhC-CCCCCC-CHHHHHhcCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKAG---YKMAVH-DVNCNVMKMFSDM-GVPTKE-TPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~G---~~V~~~-dr~~~~~~~l~~~-g~~~~~-s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
||++|++.|.++| ++|+++ +|++++.+++.+. +..... +..++++.+|+||+|+| +.. +.+++... ...
T Consensus 10 mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~-p~~-~~~v~~~i-~~~-- 84 (96)
T PF03807_consen 10 MGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK-PQQ-LPEVLSEI-PHL-- 84 (96)
T ss_dssp HHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S--GGG-HHHHHHHH-HHH--
T ss_pred HHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC-HHH-HHHHHHHH-hhc--
Confidence 7999999999999 999955 9999999988654 555555 89999999999999999 555 88888764 212
Q ss_pred CCCCCCeEEEEeCC
Q 022170 75 GNSVRPQLLIDSST 88 (301)
Q Consensus 75 ~~~~~~~ivid~st 88 (301)
.+++++|++..
T Consensus 85 ---~~~~~vis~~a 95 (96)
T PF03807_consen 85 ---LKGKLVISIAA 95 (96)
T ss_dssp ---HTTSEEEEEST
T ss_pred ---cCCCEEEEeCC
Confidence 35679998753
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.9e-08 Score=85.71 Aligned_cols=277 Identities=12% Similarity=0.083 Sum_probs=166.5
Q ss_pred CcHHHHHHHHhC--CC-----eEEEEcCChhhHH---HH----HhC--------------CCCCCCCHHHHHhcCCEEEE
Q 022170 1 MGFRMASNLMKA--GY-----KMAVHDVNCNVMK---MF----SDM--------------GVPTKETPFEVAEASDVVIT 52 (301)
Q Consensus 1 mG~~lA~~L~~~--G~-----~V~~~dr~~~~~~---~l----~~~--------------g~~~~~s~~e~~~~adiVi~ 52 (301)
||+++|+.+..+ +| +|.+|-+..+.-. .+ +.. .+.+.+++.+++.+||+++.
T Consensus 32 WGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ea~~dADilvf 111 (372)
T KOG2711|consen 32 WGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVEAAKDADILVF 111 (372)
T ss_pred HHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHHHhccCCEEEE
Confidence 789999988764 22 5888855432221 22 221 25567899999999999999
Q ss_pred ecCCCccchhhhhcCCCccccCCCCCCCeEEEEe-CCCC---HH-HHHHHHHHHhhchhhhccCCCCCceEEecccCCCH
Q 022170 53 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS-STID---PQ-TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV 127 (301)
Q Consensus 53 ~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~-st~~---p~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~ 127 (301)
.+|. +. +.+++.++.+..+ ++...|.+ .+++ +. ..+-+++.+.+. .| ..+.++.+|.+..+
T Consensus 112 ~vPh-Qf-~~~ic~~l~g~vk-----~~~~aISL~KG~e~~~~g~~i~liS~iI~~~-----lg--I~~~vL~GaNiA~E 177 (372)
T KOG2711|consen 112 VVPH-QF-IPRICEQLKGYVK-----PGATAISLIKGVEVGEEGPGIRLISQIIHRA-----LG--IPCSVLMGANIASE 177 (372)
T ss_pred eCCh-hh-HHHHHHHHhcccC-----CCCeEEEeecceeccCCCCceeehHHHHHHH-----hC--CCceeecCCchHHH
Confidence 9994 44 8899988777664 33444544 3443 22 245555655542 12 13668888888887
Q ss_pred HHhhccceEEEecCCH-HHHHHHHHHHHhcCCCeEeeCCc-----------------chHHHHHHHHHHHHHHHHHHHHH
Q 022170 128 LAAEAGTLTFMVGGSE-DAYQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSE 189 (301)
Q Consensus 128 ~~a~~g~l~~~~gg~~-~~~~~~~~ll~~~~~~~~~~g~~-----------------g~a~~~k~~~N~~~~~~~~~~~E 189 (301)
...+.=+-..+.+-++ +.-..+..+|+.-..++..+.+. |....+.+.+|+..+++..++.|
T Consensus 178 Va~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~E 257 (372)
T KOG2711|consen 178 VANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLLE 257 (372)
T ss_pred HHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHHH
Confidence 7766543233333333 33334777777666555544331 55566778899999999999999
Q ss_pred HHHHHHHc-CC-CHHHHHHHHhhcCCC--ccccccCCCCCCcccC-CCCCC-CCC-CCcchhhHHHHHHHHHHHHHHcCC
Q 022170 190 ALTLGQSL-GI-SASTLTKILNSSSAR--CWSSDSYNPVPGVMEG-VPASR-NYG-GGFASKLMAKDLNLALASAKEVGV 262 (301)
Q Consensus 190 ~~~l~~~~-G~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~-~~~-~~~~~~~~~kd~~~~~~~a~~~g~ 262 (301)
+..|++.+ .- .++++++.-+..+.- +..-+++.-...+..+ ..+.. +-. ...+.-.+....+.+++++++.++
T Consensus 258 m~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeafaktgk~~~~~E~ell~Gq~~QG~~Ta~~Vy~~L~~~~l 337 (372)
T KOG2711|consen 258 MIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNGQKLQGPATAKEVYELLQKKGL 337 (372)
T ss_pred HHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCCCcccCcHHHHHHHHHHHHcCh
Confidence 99999986 33 566665543332110 1111121111111110 00000 000 011133455677889999999998
Q ss_pred --CchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhCCC
Q 022170 263 --DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 298 (301)
Q Consensus 263 --~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 298 (301)
..|++.++|++.. ++....++++.++..+
T Consensus 338 ~~kfPlftaVykI~~-------~~~~~~~lle~l~~~~ 368 (372)
T KOG2711|consen 338 VEKFPLFTAVYKICY-------ERLPPQALLECLRNHP 368 (372)
T ss_pred hhhCcHHHHHHHHHh-------cCCCHHHHHHHHhccc
Confidence 8999999999874 4557778888776544
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.7e-08 Score=78.93 Aligned_cols=242 Identities=13% Similarity=0.135 Sum_probs=146.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----------------------------CCCCCCCHHHHHhcCCEEE
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----------------------------GVPTKETPFEVAEASDVVI 51 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----------------------------g~~~~~s~~e~~~~adiVi 51 (301)
||+++|+..+..||+|+++|+|++...+..+. .++.+++..+++.++|+||
T Consensus 22 MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~~v~dadlii 101 (298)
T KOG2304|consen 22 MGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSDAVSDADLII 101 (298)
T ss_pred cchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHHhhhhhHHHH
Confidence 89999999999999999999999887654331 1445677788889999999
Q ss_pred EecCCCccchhhhhcC-CCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEec-ccCCCHHH
Q 022170 52 TMLPSSSHQVLDVYNG-PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLA 129 (301)
Q Consensus 52 ~~vp~~~~~~~~v~~~-~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-pv~g~~~~ 129 (301)
.++-...+ ++.-+++ ++... ++. .++- |+++.-...+++..+.+ +.+..|.||+.+ |+.--. .
T Consensus 102 EAivEn~d-iK~~lF~~l~~~a-----k~~-~il~-tNTSSl~lt~ia~~~~~------~srf~GlHFfNPvPvMKLv-E 166 (298)
T KOG2304|consen 102 EAIVENLD-IKRKLFKDLDKIA-----KSS-TILA-TNTSSLSLTDIASATQR------PSRFAGLHFFNPVPVMKLV-E 166 (298)
T ss_pred HHHHHhHH-HHHHHHHHHHhhc-----ccc-eEEe-ecccceeHHHHHhhccC------hhhhceeeccCCchhHHHh-h
Confidence 98887766 5544433 33333 232 3332 33332223345544433 122235777765 333211 1
Q ss_pred hhccceEEEecCCHHHHHHHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022170 130 AEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 208 (301)
Q Consensus 130 a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 208 (301)
..... -.+++.|..+-.+-+.+|+.++.+-+ +| . +.|-+. +-.+.|++++.++...+.|++-.++
T Consensus 167 Vir~~-----~TS~eTf~~l~~f~k~~gKttVackDtpG--F----IVNRlL---iPyl~ea~r~yerGdAskeDIDtaM 232 (298)
T KOG2304|consen 167 VIRTD-----DTSDETFNALVDFGKAVGKTTVACKDTPG--F----IVNRLL---IPYLMEAIRMYERGDASKEDIDTAM 232 (298)
T ss_pred hhcCC-----CCCHHHHHHHHHHHHHhCCCceeecCCCc--h----hhhHHH---HHHHHHHHHHHHhcCCcHhhHHHHH
Confidence 10110 12578888888898999998888765 43 2 223332 3667999999999999999999999
Q ss_pred hhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHH--HHcCCCchHHHHHHHHHHHHHHCCCCCCc
Q 022170 209 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASA--KEVGVDCPLTSQAQDIYAKLCENGHDSKD 286 (301)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a--~~~g~~~p~~~~~~~~~~~a~~~g~g~~d 286 (301)
..|++. ++ +|.. + -||-+ ++...--++-.++.- ...-.|.|+++....--+...+.|.|..+
T Consensus 233 klGagy-PM----GPfE-------L-~DyvG---LDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~ 296 (298)
T KOG2304|consen 233 KLGAGY-PM----GPFE-------L-ADYVG---LDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYK 296 (298)
T ss_pred hccCCC-CC----ChHH-------H-HHHhh---HHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCcccee
Confidence 888642 11 1110 0 12211 222222222222221 12235789888888777777788887766
Q ss_pred h
Q 022170 287 F 287 (301)
Q Consensus 287 ~ 287 (301)
|
T Consensus 297 Y 297 (298)
T KOG2304|consen 297 Y 297 (298)
T ss_pred c
Confidence 5
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-06 Score=77.28 Aligned_cols=250 Identities=15% Similarity=0.186 Sum_probs=144.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC------------CCCHHHHHhcCCEEEEecCCCccchhhhhcCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT------------KETPFEVAEASDVVITMLPSSSHQVLDVYNGP 68 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~------------~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~ 68 (301)
||+-++..|.++|++|+++.|++. ++++++.|+.. +....+....+|+||+++...+ +.+++...
T Consensus 11 vG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q--~~~al~~l 87 (307)
T COG1893 11 IGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ--LEEALPSL 87 (307)
T ss_pred HHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc--HHHHHHHh
Confidence 689999999999999999999887 78888865221 2233345568999999999655 78888766
Q ss_pred CccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHH---Hhhccce--EEEecCCH
Q 022170 69 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL---AAEAGTL--TFMVGGSE 143 (301)
Q Consensus 69 ~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~---~a~~g~l--~~~~gg~~ 143 (301)
.+++. +...+++--.+..-.+ .+.+..... ....++.+..+--- ++. ....|.. ..+.|+++
T Consensus 88 ~~~~~----~~t~vl~lqNG~g~~e--~l~~~~~~~------~il~G~~~~~a~~~-~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 88 APLLG----PNTVVLFLQNGLGHEE--ELRKILPKE------TVLGGVTTHGAVRE-GPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred hhcCC----CCcEEEEEeCCCcHHH--HHHHhCCcc------eEEEEEeeeeeEec-CCceEEEecCCcEEEccCCCCch
Confidence 55553 2223444445554443 554544321 00011212111111 111 1111221 22234455
Q ss_pred HHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcC--CC
Q 022170 144 DAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM---------------------AVSMLGVSEALTLGQSLG--IS 200 (301)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~---------------------~~~~~~~~E~~~l~~~~G--~~ 200 (301)
+.++.+.++|+.-+..+.+..++-...-.|++-|.-. ......+.|....+++.| ++
T Consensus 155 ~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~ 234 (307)
T COG1893 155 ELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELP 234 (307)
T ss_pred HHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 6788888888887777666555555555565544433 335678899999999999 45
Q ss_pred HHHHHHHHhhcCCCccccccCCC-CCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 022170 201 ASTLTKILNSSSARCWSSDSYNP-VPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 279 (301)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 279 (301)
.+.+.++........ ..++.. ..++..++..+ .--=...+++.++++|+++|..+.++++.+....
T Consensus 235 ~~~~~~v~~~~~~~~--~~~~sSM~qDl~~gr~tE-----------id~i~G~vv~~a~~~gi~~P~~~~L~~lvk~~e~ 301 (307)
T COG1893 235 EEVVERVLAVIRATD--AENYSSMLQDLEKGRPTE-----------IDAINGAVVRLAKKHGLATPVNDTLYALLKAKEA 301 (307)
T ss_pred HHHHHHHHHHHHhcc--cccCchHHHHHHcCCccc-----------HHHHhhHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 543333333221110 001100 11111221111 1122358999999999999999999999887654
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-06 Score=77.55 Aligned_cols=251 Identities=17% Similarity=0.103 Sum_probs=135.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCC------------CCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTK------------ETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~------------~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
||+-+|..|.++|++|++++|+++.++.+.+. |+... .+. +.....|+||+|+.... +.+++..
T Consensus 13 iG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~-~~~~~~D~viv~vK~~~--~~~al~~ 89 (305)
T PRK05708 13 LGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETA-DAAEPIHRLLLACKAYD--AEPAVAS 89 (305)
T ss_pred HHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCc-ccccccCEEEEECCHHh--HHHHHHH
Confidence 68999999999999999999998888878754 32211 111 12346899999999654 6777765
Q ss_pred CCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhh-ccceEEEecC-CHHH
Q 022170 68 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE-AGTLTFMVGG-SEDA 145 (301)
Q Consensus 68 ~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~-~g~l~~~~gg-~~~~ 145 (301)
..+.+. +...++.--.++.... .+.+.+....+ .. ++.++.+-.. +|.... .+.-.+.+|. +.+.
T Consensus 90 l~~~l~----~~t~vv~lQNGv~~~e--~l~~~~~~~~v--~~----g~~~~ga~~~-~pg~v~~~~~g~~~~G~~~~~~ 156 (305)
T PRK05708 90 LAHRLA----PGAELLLLQNGLGSQD--AVAARVPHARC--IF----ASSTEGAFRD-GDWRVVFAGHGFTWLGDPRNPT 156 (305)
T ss_pred HHhhCC----CCCEEEEEeCCCCCHH--HHHHhCCCCcE--EE----EEeeeceecC-CCCEEEEeceEEEEEcCCCCcc
Confidence 444442 2333444445665432 33333322100 00 1122211111 111111 1111233443 2234
Q ss_pred HHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHcCCC--HHHHH
Q 022170 146 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA------------------VSMLGVSEALTLGQSLGIS--ASTLT 205 (301)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~------------------~~~~~~~E~~~l~~~~G~~--~~~~~ 205 (301)
.+.+.++|+.-+.++....++-...-.|++.|.... .....+.|+..++++.|++ .+.+.
T Consensus 157 ~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~~ 236 (305)
T PRK05708 157 APAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANLH 236 (305)
T ss_pred hHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHHH
Confidence 456667777666555544455555666766555321 2456789999999999975 22233
Q ss_pred HHHhh---cCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH-HCC
Q 022170 206 KILNS---SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC-ENG 281 (301)
Q Consensus 206 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~-~~g 281 (301)
+.+.. .+.....| -..++..++..+=++ =...++++++++|+++|..+.+++..+... +.|
T Consensus 237 ~~~~~~~~~~~~~~sS----M~qD~~~gR~tEid~-----------i~G~vvr~a~~~Gv~~P~~~~l~~~v~~~~~~~~ 301 (305)
T PRK05708 237 EEVQRVIQATAANYSS----MYQDVRAGRRTEISY-----------LLGYACRAADRHGLPLPRLQHLQQRLVAHLRARG 301 (305)
T ss_pred HHHHHHHHhccCCCcH----HHHHHHcCCceeehh-----------hhhHHHHHHHHcCCCCchHHHHHHHHHHHHHhcC
Confidence 32221 11110000 011122222211111 135899999999999999999998766554 445
Q ss_pred C
Q 022170 282 H 282 (301)
Q Consensus 282 ~ 282 (301)
.
T Consensus 302 ~ 302 (305)
T PRK05708 302 L 302 (305)
T ss_pred C
Confidence 4
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.3e-07 Score=74.08 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=66.4
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CC----CCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GV----PTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~----~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
||.+++..|.+.| ++|++|||++++.+.+.+. +. ....++.+++.++|+|++|+|.+...+..+......
T Consensus 30 ~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~~~~---- 105 (155)
T cd01065 30 AARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDELPLPPSL---- 105 (155)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCCCCCCHHH----
Confidence 6889999999986 8899999999988776554 32 234577777899999999999654101222221111
Q ss_pred CCCCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 75 GNSVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 75 ~~~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
..++++++|+++..+.+ .+.+.+.+
T Consensus 106 --~~~~~~v~D~~~~~~~~--~l~~~~~~ 130 (155)
T cd01065 106 --LKPGGVVYDVVYNPLET--PLLKEARA 130 (155)
T ss_pred --cCCCCEEEEcCcCCCCC--HHHHHHHH
Confidence 23568999999986654 66666654
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.7e-06 Score=75.77 Aligned_cols=138 Identities=20% Similarity=0.172 Sum_probs=88.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcC-ChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDV-NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr-~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||.++|.+|.++|++|+++++ ++++.+.+.+.|+.. .++.+++++||+|++++|+... ...+.....+.+ .+
T Consensus 14 mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~-~s~~ea~~~ADiVvLaVpp~~~-~~~v~~ei~~~l-----~~ 86 (314)
T TIGR00465 14 QGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKV-GTVEEAIPQADLIMNLLPDEVQ-HEVYEAEIQPLL-----KE 86 (314)
T ss_pred HHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEE-CCHHHHHhcCCEEEEeCCcHhH-HHHHHHHHHhhC-----CC
Confidence 799999999999999887654 445666666778765 4688899999999999996534 555543332222 24
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCc-eEEecccCCCH-H----HhhccceEEE-ecC--CHHHHHHHH
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENP-VMLDAPVSGGV-L----AAEAGTLTFM-VGG--SEDAYQAAK 150 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~pv~g~~-~----~a~~g~l~~~-~gg--~~~~~~~~~ 150 (301)
+.+|.-+.++.....+ ..++. +. .+.-+|-..+. . ....|...++ +.- +.+..+.+.
T Consensus 87 g~iVs~aaG~~i~~~~---~~~~~-----------~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~ 152 (314)
T TIGR00465 87 GKTLGFSHGFNIHFVQ---IVPPK-----------DVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIAL 152 (314)
T ss_pred CcEEEEeCCccHhhcc---ccCCC-----------CCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHH
Confidence 5566666777765432 22221 12 23455655443 1 1134543333 433 466788999
Q ss_pred HHHHhcCCC
Q 022170 151 PLFLSMGKN 159 (301)
Q Consensus 151 ~ll~~~~~~ 159 (301)
.+++.+|..
T Consensus 153 ~~~~~iG~~ 161 (314)
T TIGR00465 153 AYAKAIGGG 161 (314)
T ss_pred HHHHHcCCC
Confidence 999999976
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-06 Score=80.22 Aligned_cols=98 Identities=13% Similarity=0.168 Sum_probs=79.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|.+|.+|||++...+.....|+....+++|+++.||+|++++|...+ .+.++. +..++. .++|
T Consensus 203 IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~-T~~li~--~~~l~~--mk~g 277 (385)
T PRK07574 203 IGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPE-TEHLFD--ADVLSR--MKRG 277 (385)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHH-HHHHhC--HHHHhc--CCCC
Confidence 68999999999999999999987544444455666667999999999999999998887 888874 345554 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++....-....+.+.+.+
T Consensus 278 a~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 278 SYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred cEEEECCCCchhhHHHHHHHHHh
Confidence 99999999888888888888865
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=9e-07 Score=77.53 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=53.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||.+|.++|+.|++|++... ++++.+++||+||+|++.+.. +..++ + .+|
T Consensus 171 vG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~-v~~~~------i-----k~G 224 (301)
T PRK14194 171 VGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRL-IDADW------L-----KPG 224 (301)
T ss_pred cHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhc-ccHhh------c-----cCC
Confidence 899999999999999999987632 789999999999999998776 66654 2 357
Q ss_pred eEEEEeCCC
Q 022170 81 QLLIDSSTI 89 (301)
Q Consensus 81 ~ivid~st~ 89 (301)
.++||+|..
T Consensus 225 aiVIDvgin 233 (301)
T PRK14194 225 AVVIDVGIN 233 (301)
T ss_pred cEEEEeccc
Confidence 899999863
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=78.95 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=80.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|.+|.+|||++...+...+.|+....++++++..||+|++++|...+ .+.++.. ..++. .+++
T Consensus 210 IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~-T~~li~~--~~l~~--mk~g 284 (386)
T PLN03139 210 IGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEK-TRGMFNK--ERIAK--MKKG 284 (386)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHH-HHHHhCH--HHHhh--CCCC
Confidence 68999999999999999999986554445556777777999999999999999998887 8888743 45654 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++....-....+.+.+.+
T Consensus 285 a~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 285 VLIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred eEEEECCCCchhhHHHHHHHHHc
Confidence 99999998888878888888765
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.2e-05 Score=64.49 Aligned_cols=186 Identities=22% Similarity=0.252 Sum_probs=112.9
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhh-----HHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNV-----MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~-----~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
|..||..++++||+|...+.|.+. .+++...|.+.+++..++++.+++.++.+|.... .-.+.. .++++
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~-T~~Iar---ei~~h-- 106 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKA-TFGIAR---EILEH-- 106 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchh-hHHHHH---HHHhh--
Confidence 788999999999999998765543 4566778999999999999999999999998754 444443 24443
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCce-EEecccCCCHHHhhccceEEEec----C----CHHHHH
Q 022170 77 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV-MLDAPVSGGVLAAEAGTLTFMVG----G----SEDAYQ 147 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~pv~g~~~~a~~g~l~~~~g----g----~~~~~~ 147 (301)
.+.|.++.++.|++|-..-.-.+..-+ .+ +. ..|+. +..+.+=|.|.+ +- ++..| | .++-.+
T Consensus 107 vpEgAVicnTCT~sp~vLy~~LE~~Lr--~k-R~--dVGvssmHPAgvPGtp~h---~~-yviagr~t~g~elATeEQi~ 177 (340)
T COG4007 107 VPEGAVICNTCTVSPVVLYYSLEGELR--TK-RE--DVGVSSMHPAGVPGTPQH---GH-YVIAGRSTEGKELATEEQIE 177 (340)
T ss_pred CcCCcEecccccCchhHHHHHhhhhhc--Cc-hh--hcCccccCCCCCCCCCCC---ce-EEEeccCCCceeeccHHHHH
Confidence 467889999999988654333222211 00 00 01122 222233344432 11 22221 1 355678
Q ss_pred HHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHH
Q 022170 148 AAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISAST 203 (301)
Q Consensus 148 ~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~-~~G~~~~~ 203 (301)
++..+.+..|+.++.+- ..--+++-=....+.+..+.++.+-+..+. -.|.+.+.
T Consensus 178 r~velaes~Gk~~yv~p-adv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eM 233 (340)
T COG4007 178 RCVELAESTGKEVYVLP-ADVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKEM 233 (340)
T ss_pred HHHHHHHhcCCceEecC-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 88899999999877663 222222222234444555555556555554 24555443
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.1e-06 Score=75.34 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=51.3
Q ss_pred CcHHHHHHHHhCCCeEEEEc-CChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHD-VNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~d-r~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||.+||.+|.++|++|++|+ |++ ++++++++||+|++|++.+.. ++.++ + .+
T Consensus 170 mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~-v~~~~------l-----k~ 222 (296)
T PRK14188 170 VGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEM-VKGDW------I-----KP 222 (296)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhh-cchhe------e-----cC
Confidence 89999999999999999995 765 468889999999999998765 66544 2 35
Q ss_pred CeEEEEeCCC
Q 022170 80 PQLLIDSSTI 89 (301)
Q Consensus 80 ~~ivid~st~ 89 (301)
|.++||++..
T Consensus 223 GavVIDvGin 232 (296)
T PRK14188 223 GATVIDVGIN 232 (296)
T ss_pred CCEEEEcCCc
Confidence 7899999863
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.9e-06 Score=75.97 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=61.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.++|++|...|++|++|+|.....+.....|... .+++++++.||+|++++|++. .+.++. +++++. ..++
T Consensus 27 IG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd~~--t~~V~~--~eil~~--MK~G 99 (335)
T PRK13403 27 QGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPDEQ--QAHVYK--AEVEEN--LREG 99 (335)
T ss_pred HHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCChH--HHHHHH--HHHHhc--CCCC
Confidence 799999999999999999987655555555567765 489999999999999999754 567774 235554 3456
Q ss_pred eEEEEeCCC
Q 022170 81 QLLIDSSTI 89 (301)
Q Consensus 81 ~ivid~st~ 89 (301)
.+++-+-+.
T Consensus 100 aiL~f~hgf 108 (335)
T PRK13403 100 QMLLFSHGF 108 (335)
T ss_pred CEEEECCCc
Confidence 666655443
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.8e-06 Score=76.50 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=75.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|+.|...|++|.+|||++.... ....+.. ..++++++++||+|++++|...+ .+.++.. ..++. .+++
T Consensus 161 IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~-T~~~i~~--~~~~~--mk~g 233 (333)
T PRK13243 161 IGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-YRPLEELLRESDFVSLHVPLTKE-TYHMINE--ERLKL--MKPT 233 (333)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-ecCHHHHHhhCCEEEEeCCCChH-HhhccCH--HHHhc--CCCC
Confidence 689999999999999999999876432 2333544 35899999999999999998776 7777643 34544 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||+|....-....+.+.+.+
T Consensus 234 a~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 234 AILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred eEEEECcCchhcCHHHHHHHHHc
Confidence 99999999888888888888765
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3e-06 Score=75.12 Aligned_cols=92 Identities=17% Similarity=0.199 Sum_probs=73.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-CCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-KETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||..+|+.|...|++|++|||+... .+... ..++++++++||+|++++|...+ .+.++. .+.+.. .++
T Consensus 133 IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~-T~~li~--~~~l~~--mk~ 201 (303)
T PRK06436 133 IGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDE-TRGMIN--SKMLSL--FRK 201 (303)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCch-hhcCcC--HHHHhc--CCC
Confidence 6899999888889999999998532 23322 56899999999999999998877 777764 234544 457
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
+.++|++|...+-....+.+.+.+
T Consensus 202 ga~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 202 GLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred CeEEEECCCccccCHHHHHHHHHc
Confidence 899999999988888888888765
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.4e-06 Score=74.52 Aligned_cols=94 Identities=15% Similarity=0.240 Sum_probs=70.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||+++|+.|...|++|++|||+++..... ...+.++.+++++||+|++++|...+ .+.++. +..++. .+++
T Consensus 157 IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~-t~~li~--~~~l~~--mk~g 227 (330)
T PRK12480 157 IGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKE-SYHLFD--KAMFDH--VKKG 227 (330)
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHH-HHHHHh--HHHHhc--CCCC
Confidence 68999999999999999999998754322 23456899999999999999998765 666664 245544 3577
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-....+.+.+.+
T Consensus 228 avlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 228 AILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred cEEEEcCCccccCHHHHHHHHHc
Confidence 89999986555455566666654
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.8e-06 Score=67.07 Aligned_cols=178 Identities=15% Similarity=0.211 Sum_probs=117.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH-----------hCC--------------CCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DMG--------------VPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~-----------~~g--------------~~~~~s~~e~~~~adiVi~~vp 55 (301)
.|++.|..|+..||+|..||+.++.+.... +.| +..++++.|+++++=.|--|+|
T Consensus 14 ~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~Ai~iQEcvp 93 (313)
T KOG2305|consen 14 VGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKGAIHIQECVP 93 (313)
T ss_pred ccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhhhhhHHhhch
Confidence 478899999999999999999987654322 222 4567899999999999999999
Q ss_pred CCccchh-hhhcCCCccccCCCCCCCeEEEEeCCC--CHHHHHHHHHHHhhchhhhccCCCCCceEEeccc----CCCHH
Q 022170 56 SSSHQVL-DVYNGPNGLLQGGNSVRPQLLIDSSTI--DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV----SGGVL 128 (301)
Q Consensus 56 ~~~~~~~-~v~~~~~~~l~~~~~~~~~ivid~st~--~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv----~g~~~ 128 (301)
.+-. ++ +++.+.+.++. ..+|+-.||. .|+ +.-+..+.. . -..+..|+ +-.-
T Consensus 94 E~L~-lkk~ly~qlD~i~d------~~tIlaSSTSt~mpS--~~s~gL~~k------~-----q~lvaHPvNPPyfiPL- 152 (313)
T KOG2305|consen 94 EDLN-LKKQLYKQLDEIAD------PTTILASSTSTFMPS--KFSAGLINK------E-----QCLVAHPVNPPYFIPL- 152 (313)
T ss_pred HhhH-HHHHHHHHHHHhcC------CceEEeccccccChH--HHhhhhhhh------h-----heeEecCCCCCcccch-
Confidence 8866 43 34444454542 2355555443 444 222222221 0 13344443 3221
Q ss_pred HhhccceEEEec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 022170 129 AAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 205 (301)
Q Consensus 129 ~a~~g~l~~~~g---g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~ 205 (301)
+=++- ..++.+++.+.+++.+|-+++.....-.|.++.-+. .+.++|..+|....+++..++-
T Consensus 153 -------vElVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq-------~Ailne~wrLvasGil~v~dvD 218 (313)
T KOG2305|consen 153 -------VELVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQ-------YAILNETWRLVASGILNVNDVD 218 (313)
T ss_pred -------heeccCCCCChhHHHHHHHHHHHhCCCCcccccccccceecccc-------HHHHHHHHHHHHccCcchhhHH
Confidence 11121 267889999999999998777765544444544332 3556999999999999999998
Q ss_pred HHHhhcCC
Q 022170 206 KILNSSSA 213 (301)
Q Consensus 206 ~~~~~~~~ 213 (301)
.+++.|-|
T Consensus 219 ~VmS~GLG 226 (313)
T KOG2305|consen 219 AVMSAGLG 226 (313)
T ss_pred HHHhcCCC
Confidence 99988854
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.6e-06 Score=74.54 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=71.8
Q ss_pred CcHHHHHHHH-hCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~-~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||+++|+.|+ ..|.+|++||+++.... ..++....++++++++||+|++++|.... .+.++ + ...++. .++
T Consensus 157 IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~-t~~li-~-~~~l~~--mk~ 228 (332)
T PRK08605 157 IGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKY-NHYLF-N-ADLFKH--FKK 228 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcc-hhhhc-C-HHHHhc--CCC
Confidence 6899999994 46889999999875431 22345567899999999999999998765 55443 2 224443 357
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
+.++||+|.........+.+.+.+
T Consensus 229 gailIN~sRG~~vd~~aL~~aL~~ 252 (332)
T PRK08605 229 GAVFVNCARGSLVDTKALLDALDN 252 (332)
T ss_pred CcEEEECCCCcccCHHHHHHHHHh
Confidence 789999999998888888888865
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00026 Score=58.72 Aligned_cols=118 Identities=12% Similarity=0.148 Sum_probs=77.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..++..|.++||.|+ +.+||+||+|+|-.. +.+++... .
T Consensus 12 mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~~--~~~~i~~~----------~- 52 (197)
T PRK06444 12 LGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPIDA--ALNYIESY----------D- 52 (197)
T ss_pred HHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHHH--HHHHHHHh----------C-
Confidence 89999999999999986 258999999999543 56666431 1
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHHhhcc--ceEEEec--CCHHHHHHHHHHHHh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAG--TLTFMVG--GSEDAYQAAKPLFLS 155 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~a~~g--~l~~~~g--g~~~~~~~~~~ll~~ 155 (301)
.+++|.+++.-... +. . ..|+ ..|++|. ..+..+ ...+++. .+++..+.++.+++
T Consensus 53 ~~v~Dv~SvK~~i~----~~-~-------------~~~vg~HPMfGp-~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~- 112 (197)
T PRK06444 53 NNFVEISSVKWPFK----KY-S-------------GKIVSIHPLFGP-MSYNDGVHRTVIFINDISRDNYLNEINEMFR- 112 (197)
T ss_pred CeEEeccccCHHHH----Hh-c-------------CCEEecCCCCCC-CcCcccccceEEEECCCCCHHHHHHHHHHHc-
Confidence 37889999887421 11 0 2344 4688873 333221 2233342 25567788899988
Q ss_pred cCCCeEeeCCcchHHHHHHHHHH
Q 022170 156 MGKNTIYCGGAGNGAAAKICNNL 178 (301)
Q Consensus 156 ~~~~~~~~g~~g~a~~~k~~~N~ 178 (301)
|.+++.+.+...-..+-+++.+
T Consensus 113 -G~~~~~~t~eeHD~~~A~ishL 134 (197)
T PRK06444 113 -GYHFVEMTADEHDLLMSEIMVK 134 (197)
T ss_pred -CCEEEEeCHHHHHHHHHHHHHH
Confidence 6788888765555555555444
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.1e-05 Score=64.42 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=69.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|+.+|+.|..-|.+|++|||+..........+. ...+++|+++.||+|++++|-..+ .+.++.. ..++. .+++
T Consensus 47 IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~-T~~li~~--~~l~~--mk~g 120 (178)
T PF02826_consen 47 IGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPE-TRGLINA--EFLAK--MKPG 120 (178)
T ss_dssp HHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTT-TTTSBSH--HHHHT--STTT
T ss_pred CcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccc-cceeeee--eeeec--cccc
Confidence 4889999999999999999999887765556666 346999999999999999996655 5655532 24443 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-.-..+.+.+.+
T Consensus 121 a~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 121 AVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp EEEEESSSGGGB-HHHHHHHHHT
T ss_pred eEEEeccchhhhhhhHHHHHHhh
Confidence 99999886554444566666654
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.7e-05 Score=70.70 Aligned_cols=96 Identities=16% Similarity=0.225 Sum_probs=70.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|++|++||+++++...... .....++++++++||+|++++|...+ .+.++.. ..+.. .+++
T Consensus 147 IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~-T~~li~~--~~l~~--mk~g 219 (312)
T PRK15469 147 LGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPE-TVGIINQ--QLLEQ--LPDG 219 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHH-HHHHhHH--HHHhc--CCCC
Confidence 6899999999999999999998765322111 11235889999999999999998877 8877742 34554 4578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-.-..+.+.+.+
T Consensus 220 a~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 220 AYLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred cEEEECCCccccCHHHHHHHHhc
Confidence 89999985544444566666654
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.3e-05 Score=74.91 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=75.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|+.|...|++|++||+.... +...+.|....+++++++++||+|++++|...+ .+.++. ...++. .+++
T Consensus 149 IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~-T~~li~--~~~l~~--mk~g 222 (525)
T TIGR01327 149 IGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPE-TRGLIG--AEELAK--MKKG 222 (525)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChh-hccCcC--HHHHhc--CCCC
Confidence 6899999999999999999985322 223445666667899999999999999998776 777763 234544 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++....-....+.+.+.+
T Consensus 223 a~lIN~aRG~~vde~aL~~aL~~ 245 (525)
T TIGR01327 223 VIIVNCARGGIIDEAALYEALEE 245 (525)
T ss_pred eEEEEcCCCceeCHHHHHHHHHc
Confidence 99999998877777778777765
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.2e-05 Score=67.38 Aligned_cols=63 Identities=17% Similarity=0.262 Sum_probs=50.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||..|.++|+.|++|... +.++++.+++||+||++++.+.. ++..+ + .+|
T Consensus 170 vG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~-v~~~~------i-----k~G 223 (284)
T PRK14179 170 VGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHF-VTKEF------V-----KEG 223 (284)
T ss_pred CcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCcccc-CCHHH------c-----cCC
Confidence 8999999999999999999321 23788999999999999998776 66544 2 357
Q ss_pred eEEEEeCCC
Q 022170 81 QLLIDSSTI 89 (301)
Q Consensus 81 ~ivid~st~ 89 (301)
.++||++..
T Consensus 224 avVIDvgin 232 (284)
T PRK14179 224 AVVIDVGMN 232 (284)
T ss_pred cEEEEecce
Confidence 899999853
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.3e-05 Score=67.38 Aligned_cols=83 Identities=19% Similarity=0.240 Sum_probs=62.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC--CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||.++|+.|...|++|++++|++++.+.+.+.|.... .++.+.+.++|+||.++|.... .++.+ +. ..
T Consensus 162 iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii-~~~~l-------~~--~k 231 (287)
T TIGR02853 162 TGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVL-TADVL-------SK--LP 231 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHh-CHHHH-------hc--CC
Confidence 6899999999999999999999988877776665433 3567788999999999995432 22222 21 23
Q ss_pred CCeEEEEeCCCCHHH
Q 022170 79 RPQLLIDSSTIDPQT 93 (301)
Q Consensus 79 ~~~ivid~st~~p~~ 93 (301)
++.++||+++..-.+
T Consensus 232 ~~aliIDlas~Pg~t 246 (287)
T TIGR02853 232 KHAVIIDLASKPGGT 246 (287)
T ss_pred CCeEEEEeCcCCCCC
Confidence 568999999865554
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.4e-05 Score=74.80 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=74.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|++|++|||+... +.....|+..+ +++++++.||+|++++|...+ .+.++.. ..++. .+++
T Consensus 151 IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~-t~~li~~--~~l~~--mk~g 223 (526)
T PRK13581 151 IGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPE-TRGLIGA--EELAK--MKPG 223 (526)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChH-hhcCcCH--HHHhc--CCCC
Confidence 6899999999999999999986432 23344566655 899999999999999998776 7777742 35544 4578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++....-....+.+.+.+
T Consensus 224 a~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 224 VRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred eEEEECCCCceeCHHHHHHHHhc
Confidence 99999998877777778777764
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.6e-05 Score=69.74 Aligned_cols=90 Identities=10% Similarity=0.019 Sum_probs=64.1
Q ss_pred CcHHHHHHHH--hCCCeEEEEcCChhhHHHHHhC----C--CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLM--KAGYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~--~~G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||..++..+. +...+|++|||++++.+.+.+. | +..+.++++++.++|+|+.|.|.+. .++.. ..+
T Consensus 136 ~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~~----pvl~~--~~l 209 (314)
T PRK06141 136 LASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLSTE----PLVRG--EWL 209 (314)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCCC----CEecH--HHc
Confidence 5777777444 4457899999999998887664 4 4556889999999999988888432 33322 122
Q ss_pred cCCCCCCCeEEEEeCCCCHHHHHHHHHHHh
Q 022170 73 QGGNSVRPQLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~ 102 (301)
.+|. +|++.+..+...+++...+.
T Consensus 210 -----~~g~-~i~~ig~~~~~~~El~~~~~ 233 (314)
T PRK06141 210 -----KPGT-HLDLVGNFTPDMRECDDEAI 233 (314)
T ss_pred -----CCCC-EEEeeCCCCcccccCCHHHH
Confidence 2444 88898888877778776554
|
|
| >PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.6e-07 Score=70.38 Aligned_cols=109 Identities=15% Similarity=0.115 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhhcC----CCccccccCCCCCCcccC-CCCCCCCC--
Q 022170 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS-TLTKILNSSS----ARCWSSDSYNPVPGVMEG-VPASRNYG-- 238 (301)
Q Consensus 167 g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~-- 238 (301)
|....+++..|+..+.++.++.|+..+++.+|-+++ ++++..+.++ +.+..++++..+..+..+ ...+...+
T Consensus 21 Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~~~G~~l~~g~~~~~~~~~~~ 100 (149)
T PF07479_consen 21 GIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNRRFGKALGKGGKSIEEAEKEM 100 (149)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcHHHHHHHHccCCCHHHHHHhh
Confidence 566677888999999999999999999999999999 8877666653 334345555443333332 11100000
Q ss_pred CCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 022170 239 GGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA 275 (301)
Q Consensus 239 ~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 275 (301)
......++...++.+.+++++.++++|++.++++++.
T Consensus 101 ~~~~~vEG~~t~~~v~~l~~~~~i~~Pl~~~vy~Il~ 137 (149)
T PF07479_consen 101 LGGQTVEGVRTAKIVYELAEKYNIEFPLFTAVYKILY 137 (149)
T ss_dssp TTTS--HHHHHHHHHHHHHHHCT-GSHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHc
Confidence 0123567888899999999999999999999999875
|
1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B .... |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00053 Score=60.32 Aligned_cols=145 Identities=15% Similarity=0.149 Sum_probs=99.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH-hCCCCCCCCHHHHH-hcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS-DMGVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~-~~g~~~~~s~~e~~-~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||.-+|.-|.++||.|.+.+|+. .+.++ ..|....+.+.+.+ +.+|+|++|+.-- . +..++.-. -. ....
T Consensus 63 mGqflAetli~aGh~li~hsRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlctsil-s-iekilaty---pf-qrlr 134 (480)
T KOG2380|consen 63 MGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSIL-S-IEKILATY---PF-QRLR 134 (480)
T ss_pred HHHHHHHHHHhcCceeEecCcch--hHHHHHHhcccccccHHHHHhcCCCEEEEEehhh-h-HHHHHHhc---Cc-hhhc
Confidence 78999999999999999999986 44443 44777777888776 5799999999843 3 67776432 11 1124
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHHhhccc-eEEEe----cCC----HHHHHH
Q 022170 79 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGT-LTFMV----GGS----EDAYQA 148 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~a~~g~-l~~~~----gg~----~~~~~~ 148 (301)
.|++++|..+..--......+.+++ ++..+ ..|++|........+ +.++. .|+ ++-++.
T Consensus 135 rgtlfvdvlSvKefek~lfekYLPk-----------dfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~ 203 (480)
T KOG2380|consen 135 RGTLFVDVLSVKEFEKELFEKYLPK-----------DFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEF 203 (480)
T ss_pred cceeEeeeeecchhHHHHHHHhCcc-----------ccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHH
Confidence 6789999988876666666666653 24444 457887652211112 12222 343 678899
Q ss_pred HHHHHHhcCCCeEeeC
Q 022170 149 AKPLFLSMGKNTIYCG 164 (301)
Q Consensus 149 ~~~ll~~~~~~~~~~g 164 (301)
+.++|.+.+.+.+++.
T Consensus 204 fleIf~cegckmVemS 219 (480)
T KOG2380|consen 204 FLEIFACEGCKMVEMS 219 (480)
T ss_pred HHHHHHhcCCeEEEEE
Confidence 9999999999988885
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=97.71 E-value=6.6e-05 Score=59.46 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=54.5
Q ss_pred cHHHHHHHHhCCCeEEEEcCChh-hHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
|.+.|.||.++|++|++..|..+ ..++..+.|.++ .+.+|+++.+|+|++.+||.. ..+++.. .+.+. ..+|
T Consensus 16 G~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v-~~~~eAv~~aDvV~~L~PD~~--q~~vy~~--~I~p~--l~~G 88 (165)
T PF07991_consen 16 GHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEV-MSVAEAVKKADVVMLLLPDEV--QPEVYEE--EIAPN--LKPG 88 (165)
T ss_dssp HHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC-CEHHHHHHC-SEEEE-S-HHH--HHHHHHH--HHHHH--S-TT
T ss_pred HHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee-ccHHHHHhhCCEEEEeCChHH--HHHHHHH--HHHhh--CCCC
Confidence 78999999999999999888766 677888888876 589999999999999999654 5677632 13332 2456
Q ss_pred eEEEEeCC
Q 022170 81 QLLIDSST 88 (301)
Q Consensus 81 ~ivid~st 88 (301)
++++-..+
T Consensus 89 ~~L~fahG 96 (165)
T PF07991_consen 89 ATLVFAHG 96 (165)
T ss_dssp -EEEESSS
T ss_pred CEEEeCCc
Confidence 67775554
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00011 Score=64.33 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=61.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----CCCCCCCHHHH-HhcCCEEEEecCCCcc-chhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVPTKETPFEV-AEASDVVITMLPSSSH-QVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g~~~~~s~~e~-~~~adiVi~~vp~~~~-~~~~v~~~~~~~l~~ 74 (301)
||.+++..|++.|++|+++||++++.+.+.+. +.....++.+. ..++|+||.|+|.... ...++... ...+
T Consensus 128 ~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~-~~~l-- 204 (270)
T TIGR00507 128 AARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVP-AEKL-- 204 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCC-HHHc--
Confidence 58899999999999999999999988777653 22122234333 3579999999996421 02211110 0112
Q ss_pred CCCCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 75 GNSVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 75 ~~~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++.+++|+++..+.| .+.+..++
T Consensus 205 ---~~~~~v~D~~y~p~~T--~ll~~A~~ 228 (270)
T TIGR00507 205 ---KEGMVVYDMVYNPGET--PFLAEAKS 228 (270)
T ss_pred ---CCCCEEEEeccCCCCC--HHHHHHHH
Confidence 3567999999988776 45555543
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00025 Score=62.08 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=65.9
Q ss_pred CcHHHHHHHHhC--CCeEE-EEcCChhhHHHHHhC-C-CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKA--GYKMA-VHDVNCNVMKMFSDM-G-VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~--G~~V~-~~dr~~~~~~~l~~~-g-~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||..++.+|.+. +++|. +|||++++.+.+.+. | ...++++++++.++|+|++|+|++. ..++... .++
T Consensus 17 IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~--h~e~~~~---aL~-- 89 (271)
T PRK13302 17 IGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASV--LRAIVEP---VLA-- 89 (271)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHH--HHHHHHH---HHH--
Confidence 588899999863 78876 789999998777654 4 3567899999999999999999765 5555532 332
Q ss_pred CCCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 76 NSVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 76 ~~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.|+.++..|.......+++.+.+++
T Consensus 90 ---aGk~Vi~~s~gal~~~~~L~~~A~~ 114 (271)
T PRK13302 90 ---AGKKAIVLSVGALLRNEDLIDLARQ 114 (271)
T ss_pred ---cCCcEEEecchhHHhHHHHHHHHHH
Confidence 2344454565555566777776654
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00022 Score=64.57 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=68.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH------------HhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF------------SDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 68 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l------------~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~ 68 (301)
||..+|+.|...|.+|++|||+..+.... ...+. ...++++++++||+|++++|.... .+.++..
T Consensus 170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~-T~~li~~- 246 (347)
T PLN02928 170 IGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKE-TAGIVND- 246 (347)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCChH-hhcccCH-
Confidence 68999999999999999999974322111 11112 346899999999999999997766 6666642
Q ss_pred CccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 69 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 69 ~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
..++. ++++.++||++-...-.-..+.+.+.+
T Consensus 247 -~~l~~--Mk~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 247 -EFLSS--MKKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred -HHHhc--CCCCeEEEECCCccccCHHHHHHHHHc
Confidence 34544 467899999975544444566666654
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00027 Score=62.64 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=61.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC--CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
+|.+++..|.+.|.+|+++||++++.+.....|.+.. .++.+.+.++|+||.|+|.... .++.+ +. ..
T Consensus 163 iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i-~~~~l-------~~--~~ 232 (296)
T PRK08306 163 TGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVL-TKEVL-------SK--MP 232 (296)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhh-hHHHH-------Hc--CC
Confidence 5889999999999999999999988877777776643 3667888999999999985432 23322 21 23
Q ss_pred CCeEEEEeCCCCHH
Q 022170 79 RPQLLIDSSTIDPQ 92 (301)
Q Consensus 79 ~~~ivid~st~~p~ 92 (301)
++.++||.++....
T Consensus 233 ~g~vIIDla~~pgg 246 (296)
T PRK08306 233 PEALIIDLASKPGG 246 (296)
T ss_pred CCcEEEEEccCCCC
Confidence 56799999875543
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00038 Score=58.04 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=53.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHH-hcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~-~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||..+|+.|.+.|++|+++|+++++.+.+.+. |+...++ .+.. .++|+++.|.....- ..+.+.. .
T Consensus 39 vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I-~~~~~~~----------l 106 (200)
T cd01075 39 VGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVI-NDDTIPQ----------L 106 (200)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEeccccccc-CHHHHHH----------c
Confidence 68999999999999999999999988887765 6554443 4444 479999977553332 3333321 1
Q ss_pred CCeEEEEeCCC
Q 022170 79 RPQLLIDSSTI 89 (301)
Q Consensus 79 ~~~ivid~st~ 89 (301)
+.++|++..+.
T Consensus 107 ~~~~v~~~AN~ 117 (200)
T cd01075 107 KAKAIAGAANN 117 (200)
T ss_pred CCCEEEECCcC
Confidence 23577877654
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00026 Score=64.69 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=68.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCc----cchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSS----HQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~----~~~~~v~~~~~~~l~~~~ 76 (301)
||+.+|+.|...|++|.+||+..... .+.....++++++++||+|++++|-.. . .+.++.. ..++.
T Consensus 127 IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~-T~~li~~--~~l~~-- 196 (381)
T PRK00257 127 VGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHP-TRHLLDE--AFLAS-- 196 (381)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCcccc-ccccCCH--HHHhc--
Confidence 68999999999999999999864321 122334689999999999999999643 2 3334321 24443
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 77 SVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.+++.++|++|....-....+.+.+.+
T Consensus 197 mk~gailIN~aRG~vVde~AL~~aL~~ 223 (381)
T PRK00257 197 LRPGAWLINASRGAVVDNQALREALLS 223 (381)
T ss_pred CCCCeEEEECCCCcccCHHHHHHHHHh
Confidence 457899999998887777788777754
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0032 Score=52.52 Aligned_cols=178 Identities=12% Similarity=0.059 Sum_probs=111.8
Q ss_pred HHHH-HHhCCCeEE----EEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 5 MASN-LMKAGYKMA----VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 5 lA~~-L~~~G~~V~----~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
+++. |.++-|.++ +-.|+++.+..+.+.-.-...+.+...+-.+++|+.+|+.. +..+... .+ ..+
T Consensus 21 l~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~~--~s~vaa~---~~----~rp 91 (289)
T COG5495 21 LGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDAL--YSGVAAT---SL----NRP 91 (289)
T ss_pred HHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHHH--HHHHHHh---cc----cCC
Confidence 3444 556666554 23688888888776533333445555566788999999652 4444321 22 346
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccC-CCHHHhh--ccceEEEecCCHHHHHHHHHHHHhc
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS-GGVLAAE--AGTLTFMVGGSEDAYQAAKPLFLSM 156 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~-g~~~~a~--~g~l~~~~gg~~~~~~~~~~ll~~~ 156 (301)
++++++||+........ ...+ .|+. ...+...-.| |.+.... .++......+|+.-+..++++...+
T Consensus 92 g~iv~HcSga~~~~il~---~~gr------~g~~-~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~em 161 (289)
T COG5495 92 GTIVAHCSGANGSGILA---PLGR------QGCI-PASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALEM 161 (289)
T ss_pred CeEEEEccCCCchhhhh---hhhh------cCCc-ceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHHh
Confidence 78999999976553332 2222 1210 0112222223 4444443 4564455577887788899999999
Q ss_pred CCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 022170 157 GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS 202 (301)
Q Consensus 157 ~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~ 202 (301)
|.++|.+-+ +.--.+....|.........+.++..+.+..|.|.-
T Consensus 162 gg~~f~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~ 206 (289)
T COG5495 162 GGEPFCVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAGDDQP 206 (289)
T ss_pred CCCceeech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCc
Confidence 999988744 556666667777777777889999999999998743
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00065 Score=60.82 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=71.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|+.+|.++..-|.+|.+||+...+- .....+.....+++++++.||+|.+.+|-... .+.++... .+.. +++|
T Consensus 153 IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~e-T~g~i~~~--~~a~--MK~g 226 (324)
T COG0111 153 IGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPE-TRGLINAE--ELAK--MKPG 226 (324)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcc-hhcccCHH--HHhh--CCCC
Confidence 48899999999999999999933322 12223566678999999999999999998776 77776532 3333 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-.-..+.+.+.+
T Consensus 227 ailIN~aRG~vVde~aL~~AL~~ 249 (324)
T COG0111 227 AILINAARGGVVDEDALLAALDS 249 (324)
T ss_pred eEEEECCCcceecHHHHHHHHHc
Confidence 89999986655555566666654
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00082 Score=60.13 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=72.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|.++|+++..-|.+|..|||++. -+...+.+....+ ++|++++||+|.+.+|-..+ .+.++.. ..++. ++++
T Consensus 157 IG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~-T~hLin~--~~l~~--mk~g 229 (324)
T COG1052 157 IGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPE-TRHLINA--EELAK--MKPG 229 (324)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChH-HhhhcCH--HHHHh--CCCC
Confidence 589999999977789999999986 3333334466665 99999999999999998776 7777653 24443 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-....+.+.+.+
T Consensus 230 a~lVNtaRG~~VDe~ALi~AL~~ 252 (324)
T COG1052 230 AILVNTARGGLVDEQALIDALKS 252 (324)
T ss_pred eEEEECCCccccCHHHHHHHHHh
Confidence 89999986666556677777764
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00069 Score=62.79 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=71.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|..+|+.+..-|.+|.+||+++... ..+.....+++++++.||+|.+++|-... .+.++.. ..++. .+++
T Consensus 162 IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~-T~~li~~--~~l~~--mk~g 232 (409)
T PRK11790 162 IGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPS-TKNMIGA--EELAL--MKPG 232 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChH-HhhccCH--HHHhc--CCCC
Confidence 58899999999999999999874321 12344566899999999999999997766 6766643 24443 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-....+.+.+.+
T Consensus 233 a~lIN~aRG~~vde~aL~~aL~~ 255 (409)
T PRK11790 233 AILINASRGTVVDIDALADALKS 255 (409)
T ss_pred eEEEECCCCcccCHHHHHHHHHc
Confidence 99999997776666777777764
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0012 Score=57.63 Aligned_cols=93 Identities=15% Similarity=0.113 Sum_probs=64.9
Q ss_pred CcHHHHHHHHhC--CCe-EEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKA--GYK-MAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~--G~~-V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||..++..|.+. +++ +.+|||++++.+.+.+. +....+++++.+.++|+|++|.|.. . ..++... .++
T Consensus 12 iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~-~-~~~~~~~---al~--- 83 (265)
T PRK13304 12 IASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN-A-VEEVVPK---SLE--- 83 (265)
T ss_pred HHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH-H-HHHHHHH---HHH---
Confidence 688899998876 455 55789999998877653 5666789999888999999999854 3 5665532 332
Q ss_pred CCCCeEEEEeCC---CCHHHHHHHHHHHhh
Q 022170 77 SVRPQLLIDSST---IDPQTSRNISAAVSN 103 (301)
Q Consensus 77 ~~~~~ivid~st---~~p~~~~~~~~~~~~ 103 (301)
.|+-++.+|+ .+++..+++.+..++
T Consensus 84 --~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~ 111 (265)
T PRK13304 84 --NGKDVIIMSVGALADKELFLKLYKLAKE 111 (265)
T ss_pred --cCCCEEEEchHHhcCHHHHHHHHHHHHH
Confidence 2334454554 366667777766654
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00039 Score=55.06 Aligned_cols=85 Identities=14% Similarity=0.196 Sum_probs=59.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCC--------------CHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE--------------TPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~--------------s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
||.-+|..|.+.|++|+++.|++ ..+.+.+.|..... +..+.....|+||+|+...+ .++++.
T Consensus 9 iG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~--~~~~l~ 85 (151)
T PF02558_consen 9 IGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ--LEQALQ 85 (151)
T ss_dssp HHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG--HHHHHH
T ss_pred HHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc--hHHHHH
Confidence 68899999999999999999998 88888776643321 12245678999999999654 788887
Q ss_pred CCCccccCCCCCCCeEEEEeCCCCHH
Q 022170 67 GPNGLLQGGNSVRPQLLIDSSTIDPQ 92 (301)
Q Consensus 67 ~~~~~l~~~~~~~~~ivid~st~~p~ 92 (301)
..++.+. +...+++-..+....
T Consensus 86 ~l~~~~~----~~t~iv~~qNG~g~~ 107 (151)
T PF02558_consen 86 SLKPYLD----PNTTIVSLQNGMGNE 107 (151)
T ss_dssp HHCTGEE----TTEEEEEESSSSSHH
T ss_pred HHhhccC----CCcEEEEEeCCCCcH
Confidence 6666653 223455555555544
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.002 Score=57.79 Aligned_cols=96 Identities=10% Similarity=0.104 Sum_probs=68.0
Q ss_pred CcHHHHHHHH-hCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~-~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
+|..+|+.+. .-|.+|..|||..... .....+.+. .++++++++||+|++++|-... .+.++.. ..++. +++
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~~-~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~-T~~li~~--~~l~~--mk~ 228 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHKE-AEERFNARY-CDLDTLLQESDFVCIILPLTDE-THHLFGA--EQFAK--MKS 228 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchh-hHHhcCcEe-cCHHHHHHhCCEEEEeCCCChH-HhhccCH--HHHhc--CCC
Confidence 5888999887 6788999999874321 222335544 4899999999999999997776 7776643 24443 467
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
+.++|+++-...-.-..+.+.+.+
T Consensus 229 ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 229 SAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred CeEEEECCCccccCHHHHHHHHHc
Confidence 899999986555445566666654
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0013 Score=58.80 Aligned_cols=82 Identities=18% Similarity=0.288 Sum_probs=55.9
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CCCCC--CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GVPTK--ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~~~~--~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||..+++.|...| ++|+++||++++...+.+. |.... +++.+.+..+|+||.|+|.+. ..+++.. .+...
T Consensus 189 iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~--~~~~~~~---~~~~~- 262 (311)
T cd05213 189 MGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPH--YAKIVER---AMKKR- 262 (311)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCc--hHHHHHH---HHhhC-
Confidence 6888899998765 7899999999988777654 54322 345677889999999999664 3233221 11110
Q ss_pred CCCCeEEEEeCC
Q 022170 77 SVRPQLLIDSST 88 (301)
Q Consensus 77 ~~~~~ivid~st 88 (301)
..++.++||.+.
T Consensus 263 ~~~~~~viDlav 274 (311)
T cd05213 263 SGKPRLIVDLAV 274 (311)
T ss_pred CCCCeEEEEeCC
Confidence 124679999984
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00059 Score=53.16 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=45.7
Q ss_pred CcHHHHHHHHhCCCe-EEEEcCChhhHHHHHhCC------CCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDMG------VPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~-V~~~dr~~~~~~~l~~~g------~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||++++..|.+.|.+ |+++||+.++++.+.+.- ....+++.+....+|+||.|+|.+.
T Consensus 23 ~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 23 AARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp HHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence 578899999999986 999999999998887642 1234566677889999999999653
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0036 Score=49.92 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=55.1
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchh-hhhcCCCccccCCCCCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVL-DVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~-~v~~~~~~~l~~~~~~~~ 80 (301)
|.++|+.|...|-+|++++++|-+.-+..-.|... .++++++..+|++|.++..... +. +-+. . .+.+
T Consensus 35 G~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v-~~~~~a~~~adi~vtaTG~~~v-i~~e~~~-------~--mkdg 103 (162)
T PF00670_consen 35 GKGIARALRGLGARVTVTEIDPIRALQAAMDGFEV-MTLEEALRDADIFVTATGNKDV-ITGEHFR-------Q--MKDG 103 (162)
T ss_dssp HHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EE-E-HHHHTTT-SEEEE-SSSSSS-B-HHHHH-------H--S-TT
T ss_pred cHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEe-cCHHHHHhhCCEEEECCCCccc-cCHHHHH-------H--hcCC
Confidence 88999999999999999999998877777778775 4789999999999999885432 22 2222 1 3467
Q ss_pred eEEEEeCCCCHH
Q 022170 81 QLLIDSSTIDPQ 92 (301)
Q Consensus 81 ~ivid~st~~p~ 92 (301)
.++.+.+....+
T Consensus 104 ail~n~Gh~d~E 115 (162)
T PF00670_consen 104 AILANAGHFDVE 115 (162)
T ss_dssp EEEEESSSSTTS
T ss_pred eEEeccCcCcee
Confidence 788887766544
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0019 Score=58.10 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=49.7
Q ss_pred hCCCeEEEEcCChhhHHHHHh----CC--CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEE
Q 022170 11 KAGYKMAVHDVNCNVMKMFSD----MG--VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI 84 (301)
Q Consensus 11 ~~G~~V~~~dr~~~~~~~l~~----~g--~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivi 84 (301)
....+|.+|||++++.+.+.+ .| +..+.++++++++||+|++|+|+.. .++.. ..+ ++|..|.
T Consensus 151 ~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~----P~~~~--~~l-----~~g~~v~ 219 (325)
T TIGR02371 151 FDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK----PVVKA--DWV-----SEGTHIN 219 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC----cEecH--HHc-----CCCCEEE
Confidence 445689999999999877754 25 3457899999999999999998543 23321 122 3566666
Q ss_pred EeCCCCHH
Q 022170 85 DSSTIDPQ 92 (301)
Q Consensus 85 d~st~~p~ 92 (301)
..++-.|.
T Consensus 220 ~vGs~~p~ 227 (325)
T TIGR02371 220 AIGADAPG 227 (325)
T ss_pred ecCCCCcc
Confidence 66666664
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0035 Score=56.02 Aligned_cols=93 Identities=14% Similarity=0.115 Sum_probs=66.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|+.+|+.+..-|.+|.+|||+.... ..+.. ..+++++++.||+|++++|-... .+.++.. ..++. ++++
T Consensus 156 IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~-T~~li~~--~~~~~--Mk~~ 225 (311)
T PRK08410 156 IGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEK-TKNLIAY--KELKL--LKDG 225 (311)
T ss_pred HHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCch-hhcccCH--HHHHh--CCCC
Confidence 47889999988899999999964321 12333 35899999999999999997766 6666643 23443 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-.-..+.+.+.+
T Consensus 226 a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 226 AILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred eEEEECCCccccCHHHHHHHHHc
Confidence 99999986554444566666654
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0048 Score=57.63 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=59.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchh-hhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVL-DVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~-~v~~~~~~~l~~~~~~~ 79 (301)
+|..+|..|...|.+|+++++++.+.......|... .+++++++.+|+|++|+.+... +. +.+ .. ..+
T Consensus 265 IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~i-I~~e~~-------~~--MKp 333 (476)
T PTZ00075 265 VGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKDI-ITLEHM-------RR--MKN 333 (476)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCcccc-cCHHHH-------hc--cCC
Confidence 589999999999999999999988765555557654 4788999999999999764332 32 222 21 346
Q ss_pred CeEEEEeCCCCH
Q 022170 80 PQLLIDSSTIDP 91 (301)
Q Consensus 80 ~~ivid~st~~p 91 (301)
+.++++++-...
T Consensus 334 GAiLINvGr~d~ 345 (476)
T PTZ00075 334 NAIVGNIGHFDN 345 (476)
T ss_pred CcEEEEcCCCch
Confidence 789999877643
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0026 Score=47.34 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHH---hCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNVMKMFS---DMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~---~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
..|+..|.+.|.+|.+||..-....... ..+++..+++.++++++|+|+++++.+. .+++-. +.+... ..+
T Consensus 20 ~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~--f~~l~~--~~~~~~--~~~ 93 (106)
T PF03720_consen 20 LELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDE--FRELDW--EEIAKL--MRK 93 (106)
T ss_dssp HHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GG--GGCCGH--HHHHHH--SCS
T ss_pred HHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHH--HhccCH--HHHHHh--cCC
Confidence 4688899999999999997655544433 2467888899999999999999999765 454211 112211 125
Q ss_pred CeEEEEeCCC
Q 022170 80 PQLLIDSSTI 89 (301)
Q Consensus 80 ~~ivid~st~ 89 (301)
+++|+|+-++
T Consensus 94 ~~~iiD~~~~ 103 (106)
T PF03720_consen 94 PPVIIDGRNI 103 (106)
T ss_dssp SEEEEESSST
T ss_pred CCEEEECccc
Confidence 6899998765
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0023 Score=48.74 Aligned_cols=80 Identities=19% Similarity=0.124 Sum_probs=46.3
Q ss_pred cHHHHHHHHhC-CCeEEEE-cCChhhHHHHHhCCCC-------CC--CCHHHHHhcCCEEEEecCCCccchhhhhcCCCc
Q 022170 2 GFRMASNLMKA-GYKMAVH-DVNCNVMKMFSDMGVP-------TK--ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 2 G~~lA~~L~~~-G~~V~~~-dr~~~~~~~l~~~g~~-------~~--~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
|..++..|.+. ++++... ++++++.+.+...+.. .. .+++ ..++|+||+|+|++.. .+++..
T Consensus 12 g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~DvV~~~~~~~~~--~~~~~~--- 84 (122)
T smart00859 12 GQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFE--ELAVDIVFLALPHGVS--KEIAPL--- 84 (122)
T ss_pred HHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChh--hcCCCEEEEcCCcHHH--HHHHHH---
Confidence 55677777774 7787654 6665444333332211 11 1222 2589999999997764 444322
Q ss_pred cccCCCCCCCeEEEEeCCCC
Q 022170 71 LLQGGNSVRPQLLIDSSTID 90 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~ 90 (301)
+... ..+|+++||+|+..
T Consensus 85 ~~~~--~~~g~~viD~s~~~ 102 (122)
T smart00859 85 LPKA--AEAGVKVIDLSSAF 102 (122)
T ss_pred HHhh--hcCCCEEEECCccc
Confidence 1111 24678999999864
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0067 Score=55.43 Aligned_cols=94 Identities=14% Similarity=0.145 Sum_probs=62.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCcc---chhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH---QVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~---~~~~v~~~~~~~l~~~~~ 77 (301)
||+.+|+.|..-|.+|.+||+..... ... ....++++++++||+|++++|-... ....++. +..+.. .
T Consensus 127 IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~--~~~l~~--m 197 (378)
T PRK15438 127 VGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLAD--EKLIRS--L 197 (378)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCcccccccccC--HHHHhc--C
Confidence 68999999999999999999753321 111 1346899999999999999994331 0222221 123433 4
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
+++.++|+++-...-.-..+.+.+.+
T Consensus 198 k~gailIN~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 198 KPGAILINACRGAVVDNTALLTCLNE 223 (378)
T ss_pred CCCcEEEECCCchhcCHHHHHHHHHh
Confidence 57899999986655555566666653
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0065 Score=54.41 Aligned_cols=91 Identities=13% Similarity=0.086 Sum_probs=65.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|+.+|+.|..-|.+|.+|||.... .... ..+++++++.||+|++++|-..+ .+.++.. ..++. ++++
T Consensus 159 IG~~vA~~l~~fgm~V~~~~~~~~~------~~~~-~~~l~ell~~sDiv~l~lPlt~~-T~~li~~--~~~~~--mk~g 226 (317)
T PRK06487 159 LGGAVARLAEAFGMRVLIGQLPGRP------ARPD-RLPLDELLPQVDALTLHCPLTEH-TRHLIGA--RELAL--MKPG 226 (317)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCc------cccc-ccCHHHHHHhCCEEEECCCCChH-HhcCcCH--HHHhc--CCCC
Confidence 4889999999889999999986421 1122 34899999999999999997766 6666643 24443 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-.-..+.+.+.+
T Consensus 227 a~lIN~aRG~vVde~AL~~AL~~ 249 (317)
T PRK06487 227 ALLINTARGGLVDEQALADALRS 249 (317)
T ss_pred eEEEECCCccccCHHHHHHHHHc
Confidence 99999985544444566666654
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0064 Score=54.36 Aligned_cols=92 Identities=15% Similarity=0.116 Sum_probs=65.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|+.+|+.+..-|.+|+.|++.... .. .. ...+++++++.||+|++++|-... .+.++.. ..++. +++|
T Consensus 158 IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~-T~~li~~--~~l~~--mk~g 226 (314)
T PRK06932 158 LGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTET-TQNLINA--ETLAL--MKPT 226 (314)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChH-HhcccCH--HHHHh--CCCC
Confidence 4788999998889999999986431 11 11 135899999999999999997665 6666643 24443 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-.-..+.+.+.+
T Consensus 227 a~lIN~aRG~~Vde~AL~~aL~~ 249 (314)
T PRK06932 227 AFLINTGRGPLVDEQALLDALEN 249 (314)
T ss_pred eEEEECCCccccCHHHHHHHHHc
Confidence 99999986544444566666654
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0079 Score=56.99 Aligned_cols=84 Identities=15% Similarity=0.206 Sum_probs=58.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCC--CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTK--ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~--~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||.+++..|.+.|++|+++||++++.+.+.+. +.... .++.+ +.++|+||.|+|.+.. +.. .+
T Consensus 343 iG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g~~-~~~-------~l----- 408 (477)
T PRK09310 343 AAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPSVT-IPK-------AF----- 408 (477)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCCCc-chh-------HH-----
Confidence 58999999999999999999999988877653 21111 12222 4689999999997543 321 11
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHh
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~ 102 (301)
. .+++|+....+.|. +.+..+
T Consensus 409 -~-~~v~D~~Y~P~~T~--ll~~A~ 429 (477)
T PRK09310 409 -P-PCVVDINTLPKHSP--YTQYAR 429 (477)
T ss_pred -h-hhEEeccCCCCCCH--HHHHHH
Confidence 1 38999998877664 444444
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0087 Score=55.50 Aligned_cols=81 Identities=19% Similarity=0.148 Sum_probs=59.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|..+|..|...|.+|+++|+++.+.......|... .+++++++.+|+||.|+.+... +..- .+.. ..+|
T Consensus 223 IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~v-I~~~------~~~~--mK~G 292 (425)
T PRK05476 223 VGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDV-ITAE------HMEA--MKDG 292 (425)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHH-HHHH------HHhc--CCCC
Confidence 588999999999999999999998876666667664 4688999999999999875433 3211 1111 2456
Q ss_pred eEEEEeCCCCH
Q 022170 81 QLLIDSSTIDP 91 (301)
Q Consensus 81 ~ivid~st~~p 91 (301)
.++++.+....
T Consensus 293 ailiNvG~~d~ 303 (425)
T PRK05476 293 AILANIGHFDN 303 (425)
T ss_pred CEEEEcCCCCC
Confidence 78888876544
|
|
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0051 Score=53.76 Aligned_cols=102 Identities=19% Similarity=0.237 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchh
Q 022170 169 GAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKI---LNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 244 (301)
Q Consensus 169 a~~~k~~~N~~~~~~~~~~~E~~~l~~~-~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (301)
|+.+||++|.+..+.+++++|+..+.++ .|.+++++.++ ++.+...|++.+.... .+. ..+.++.+-++
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~---il~----~~d~~g~~lld 73 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITAD---ILR----KKDETGGPLLD 73 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHH---HHT-----B-TTSSBGGG
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHH---HHh----hccCccCcchh
Confidence 6889999999999999999999999995 68888766555 5566666776542211 100 01111111111
Q ss_pred hH------HHHHHHHHHHHHHcCCCchHHHHHH-HHHHHH
Q 022170 245 LM------AKDLNLALASAKEVGVDCPLTSQAQ-DIYAKL 277 (301)
Q Consensus 245 ~~------~kd~~~~~~~a~~~g~~~p~~~~~~-~~~~~a 277 (301)
.. .-.-+.....|-+.|+|.|++.++. ..+.+.
T Consensus 74 ~I~d~a~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~ 113 (291)
T PF00393_consen 74 KILDKAGQKGTGKWTVQEALELGVPAPTIAAAVFARFLSA 113 (291)
T ss_dssp GB-S----BSHHHHHHHHHHHHT---HHHHHHHHHHHHHH
T ss_pred hhCCccCCCCccchHHHHHHHhCCCccHHHHHHHHHHHhc
Confidence 11 1123467778888999999988765 344443
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.011 Score=53.85 Aligned_cols=92 Identities=14% Similarity=0.203 Sum_probs=65.7
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHHhCC---C-------CCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCC
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMG---V-------PTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 69 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~g---~-------~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~ 69 (301)
+|+..|..|+++| ++|++-||++++.+++.... + .-...+.+++++.|+||.|+|.... ..++..
T Consensus 12 Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~--~~i~ka-- 87 (389)
T COG1748 12 VGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD--LTILKA-- 87 (389)
T ss_pred hHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh--HHHHHH--
Confidence 4889999999999 99999999999999887653 1 1223566788899999999996553 344421
Q ss_pred ccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 70 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 70 ~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.+ ..|.-++|+|...+.. .++.+...+
T Consensus 88 -~i-----~~gv~yvDts~~~~~~-~~~~~~a~~ 114 (389)
T COG1748 88 -CI-----KTGVDYVDTSYYEEPP-WKLDEEAKK 114 (389)
T ss_pred -HH-----HhCCCEEEcccCCchh-hhhhHHHHH
Confidence 22 2456788888776665 555555543
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0083 Score=53.53 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=73.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|..+|++|..-|..+.-+.|++...+...+.+.. ..+..+.+.++|+|++|+|.... .+.++.. ..++. +.++
T Consensus 173 IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~-T~~liNk--~~~~~--mk~g 246 (336)
T KOG0069|consen 173 IGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKE-TRHLINK--KFIEK--MKDG 246 (336)
T ss_pred HHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHH-HHHHhhH--HHHHh--cCCC
Confidence 58999999999884454557888777777766666 56889999999999999998887 8888764 35554 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-.-+.+.+.+.+
T Consensus 247 ~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 247 AVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred eEEEeccccccccHHHHHHHHhc
Confidence 89999876655555666666654
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.096 Score=45.12 Aligned_cols=111 Identities=17% Similarity=0.166 Sum_probs=74.7
Q ss_pred CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCC
Q 022170 33 GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 112 (301)
Q Consensus 33 g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~ 112 (301)
|++++++..|+++++|++++-+|.... ...++.. ++.+ .++|.+|.++.|++|-..-++-+.+.+. ..
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikk---i~~~--ipEgAII~~tCTIpt~~ly~~le~l~R~----Dv-- 195 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGM-QPDIIEK---FADD--IKEGAIVTHACTIPTTKFAKIFKDLGRD----DL-- 195 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCC-chHHHHH---HHhh--CCCCCEEeccccCCHHHHHHHHHHhCcc----cC--
Confidence 678889999999999999999998764 3444433 3433 3578899999999998766666655421 11
Q ss_pred CCCc-eEEecccCCCHHHhhccceEEEecC--CHHHHHHHHHHHHhcCCCeEee
Q 022170 113 WENP-VMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYC 163 (301)
Q Consensus 113 ~~~~-~~~~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~~~~~~~~ 163 (301)
++ .|..+.|=+.+ |+.++ --| +++..+++.++.+..++..+.+
T Consensus 196 --gIsS~HPaaVPgt~-----Gq~~i-~egyAtEEqI~klveL~~sa~k~ay~~ 241 (342)
T PRK00961 196 --NVTSYHPGAVPEMK-----GQVYI-AEGYADEEAVEKLYEIGKKARGNAFKM 241 (342)
T ss_pred --CeeccCCCCCCCCC-----Cceec-ccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 12 23333343433 33222 223 7888899999999999887766
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.013 Score=54.82 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=58.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccch-hhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQV-LDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~-~~v~~~~~~~l~~~~~~~ 79 (301)
+|..+|+.+...|.+|+++++++.+.......|.... ++++++..+|+|+.+..+... + .+.+. . ..+
T Consensus 265 IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~v-I~~e~L~-------~--MK~ 333 (477)
T PLN02494 265 VGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDI-IMVDHMR-------K--MKN 333 (477)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccc-hHHHHHh-------c--CCC
Confidence 5889999999999999999999987666666676643 688899999999998775432 2 33332 1 345
Q ss_pred CeEEEEeCCCC
Q 022170 80 PQLLIDSSTID 90 (301)
Q Consensus 80 ~~ivid~st~~ 90 (301)
+.++++++-..
T Consensus 334 GAiLiNvGr~~ 344 (477)
T PLN02494 334 NAIVCNIGHFD 344 (477)
T ss_pred CCEEEEcCCCC
Confidence 67999987643
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.011 Score=54.50 Aligned_cols=81 Identities=16% Similarity=0.089 Sum_probs=58.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|..+|+.+...|.+|+++++++.+.......|... .+++++++.+|+||.++.+... +..-. +.. .++|
T Consensus 206 IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v-~~leeal~~aDVVItaTG~~~v-I~~~~------~~~--mK~G 275 (406)
T TIGR00936 206 CGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRV-MTMEEAAKIGDIFITATGNKDV-IRGEH------FEN--MKDG 275 (406)
T ss_pred HHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEe-CCHHHHHhcCCEEEECCCCHHH-HHHHH------Hhc--CCCC
Confidence 488899999999999999999998876666667654 3678889999999999875443 33211 111 3466
Q ss_pred eEEEEeCCCCH
Q 022170 81 QLLIDSSTIDP 91 (301)
Q Consensus 81 ~ivid~st~~p 91 (301)
.++++.+-...
T Consensus 276 ailiN~G~~~~ 286 (406)
T TIGR00936 276 AIVANIGHFDV 286 (406)
T ss_pred cEEEEECCCCc
Confidence 78888876543
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0096 Score=49.30 Aligned_cols=82 Identities=16% Similarity=0.189 Sum_probs=53.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----CCC--C--C---CCHHHHHhcCCEEEEecCCCccchhhhhcCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVP--T--K---ETPFEVAEASDVVITMLPSSSHQVLDVYNGP 68 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~--~--~---~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~ 68 (301)
+|..++..|++.|++|++++|++++.+.+.+. +.. . . +++.++++++|+||.+.|.+.. .....
T Consensus 40 iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~-~~~~~--- 115 (194)
T cd01078 40 VGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAGVE-LLEKL--- 115 (194)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCCce-echhh---
Confidence 47789999999999999999999988776542 111 1 1 2234677899999999986542 11111
Q ss_pred CccccCCCCCCCeEEEEeCCCCH
Q 022170 69 NGLLQGGNSVRPQLLIDSSTIDP 91 (301)
Q Consensus 69 ~~~l~~~~~~~~~ivid~st~~p 91 (301)
... ..++.+++|..-..+
T Consensus 116 ~~~-----~~~~~vv~D~~~~~~ 133 (194)
T cd01078 116 AWA-----PKPLAVAADVNAVPP 133 (194)
T ss_pred hcc-----cCceeEEEEccCCCC
Confidence 001 123578999865443
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.013 Score=53.75 Aligned_cols=98 Identities=13% Similarity=0.106 Sum_probs=65.4
Q ss_pred CcHHHHHHHH-hCCCeEEEEcCChhh-HHHH-HhCC------------CCCCCCHHHHHhcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLM-KAGYKMAVHDVNCNV-MKMF-SDMG------------VPTKETPFEVAEASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~-~~G~~V~~~dr~~~~-~~~l-~~~g------------~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~ 65 (301)
+|+.+|+.|. .-|.+|.+||+++.. .+.. ...| .....+++++++.||+|++++|-... .+.++
T Consensus 176 IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~-T~~li 254 (386)
T PLN02306 176 IGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKT-TYHLI 254 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChh-hhhhc
Confidence 4788999885 668999999987642 1111 1111 12246899999999999999997665 66666
Q ss_pred cCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 66 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 66 ~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.. ..++. ++++.++|+++-...-.-..+.+.+.+
T Consensus 255 n~--~~l~~--MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 255 NK--ERLAL--MKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred CH--HHHHh--CCCCeEEEECCCccccCHHHHHHHHHh
Confidence 43 24443 467899999985444344455565543
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.12 Score=44.59 Aligned_cols=111 Identities=18% Similarity=0.183 Sum_probs=75.1
Q ss_pred CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCC
Q 022170 33 GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 112 (301)
Q Consensus 33 g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~ 112 (301)
|++++++..|+++++|++|+-+|.... ...++.. ++.+ .++|.+|.++.|++|-..-++-+.+.+. ..
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~-q~~Iikk---ii~~--lpEgAII~~tCTIpt~~ly~ilE~l~R~----Dv-- 193 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNK-QPDIIKK---FIDD--IPEGAIVTHACTIPTTKFAKIFEDLGRE----DL-- 193 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCC-chHHHHH---HHhh--CCCCCEEeccccCChHHHHHHHHhhCcc----cC--
Confidence 688889999999999999999998764 3444433 3433 3578899999999998666666655421 11
Q ss_pred CCCc-eEEecccCCCHHHhhccceEEEecC--CHHHHHHHHHHHHhcCCCeEee
Q 022170 113 WENP-VMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYC 163 (301)
Q Consensus 113 ~~~~-~~~~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~~~~~~~~ 163 (301)
++ .|..+.|=+.+ ++.++ +-| +++..+++.++.+..++..+.+
T Consensus 194 --gVsS~HPaaVPgt~-----~q~Yi-~egyAtEEqI~klveL~~sa~k~ay~~ 239 (340)
T TIGR01723 194 --NVTSYHPGCVPEMK-----GQVYI-AEGYASEEAVNKLYELGKKARGKAFKM 239 (340)
T ss_pred --CeeccCCCCCCCCC-----CceEe-ecccCCHHHHHHHHHHHHHhCCCeeec
Confidence 12 23333333333 33233 344 7888899999999999887766
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.043 Score=42.48 Aligned_cols=68 Identities=21% Similarity=0.227 Sum_probs=48.5
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 022170 136 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNG---AAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKI 207 (301)
Q Consensus 136 ~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~~g~a---~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~ 207 (301)
++.+.||++..+.++++++.+|.+++.+.+.... .+.-+++|+.. ..+..+..++++.|++.++..++
T Consensus 3 ~~~iEgd~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~----~L~~~a~~ll~~~gi~~~~a~~~ 73 (132)
T PF10728_consen 3 PFAIEGDEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLV----ALYALAAELLEQAGIDFEEALEA 73 (132)
T ss_dssp -EEEEESHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTT-SHHH--HH
T ss_pred EEEEecCHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHH----HHHHHHHHHHHHcCCCchhHHHH
Confidence 5677789999999999999999999999654333 34556777777 55577889999999999553333
|
; PDB: 3D1L_A 2I76_A 3DFU_A. |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.019 Score=51.09 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=54.5
Q ss_pred CcHHHHHHHHh-CC-CeEEEEcCChhhHHHHHhC----CCCC-CCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcccc
Q 022170 1 MGFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM----GVPT-KETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQ 73 (301)
Q Consensus 1 mG~~lA~~L~~-~G-~~V~~~dr~~~~~~~l~~~----g~~~-~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~ 73 (301)
||...+..+.. .+ .+|.+|+|++++.+.+.+. +... +.+.++++.++|+|+.|+|.+. .++.. .+
T Consensus 136 qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~----Pl~~~---~~- 207 (304)
T PRK07340 136 QARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT----PVYPE---AA- 207 (304)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC----ceeCc---cC-
Confidence 35566666653 45 4699999999998877654 2232 4688899999999999999543 33321 12
Q ss_pred CCCCCCCeEEEEeCCCCHH
Q 022170 74 GGNSVRPQLLIDSSTIDPQ 92 (301)
Q Consensus 74 ~~~~~~~~ivid~st~~p~ 92 (301)
.+|..|+..++..|.
T Consensus 208 ----~~g~hi~~iGs~~p~ 222 (304)
T PRK07340 208 ----RAGRLVVAVGAFTPD 222 (304)
T ss_pred ----CCCCEEEecCCCCCC
Confidence 356677766766664
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0069 Score=57.71 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=46.4
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC--CCC----CCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM--GVP----TKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~--g~~----~~~s~~e~~~~adiVi~~vp~~ 57 (301)
||..++.+|...|+ +|++++|++++.+.+.+. +.. ..+++.+++.++|+||.|+|.+
T Consensus 277 mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~ 340 (519)
T PLN00203 277 MGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE 340 (519)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC
Confidence 78999999999996 699999999999888764 221 2346778889999999998754
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.02 Score=46.34 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=45.0
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|..+|..|.+.|.+|++.+|+. .++.+.+.++|+||.|++.+. ++.. ..+ .++.
T Consensus 57 G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~-----ii~~--~~~-----~~~~ 110 (168)
T cd01080 57 GKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG-----LVKG--DMV-----KPGA 110 (168)
T ss_pred HHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc-----eecH--HHc-----cCCe
Confidence 6779999999998999999873 356778899999999999543 2221 122 2457
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||.+.
T Consensus 111 viIDla~ 117 (168)
T cd01080 111 VVIDVGI 117 (168)
T ss_pred EEEEccC
Confidence 8999874
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.034 Score=41.90 Aligned_cols=93 Identities=20% Similarity=0.330 Sum_probs=64.3
Q ss_pred cHHHHHHHHhC--CCeEE-EEcCChhhHHHHH-hCCCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 2 GFRMASNLMKA--GYKMA-VHDVNCNVMKMFS-DMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 2 G~~lA~~L~~~--G~~V~-~~dr~~~~~~~l~-~~g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
|......+.+. +++|. ++|+++++.+.+. +.|....+|.+++++ +.|+|++|+|+... ..-+.. .++.
T Consensus 12 g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h-~~~~~~----~l~~- 85 (120)
T PF01408_consen 12 GRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSH-AEIAKK----ALEA- 85 (120)
T ss_dssp HHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGH-HHHHHH----HHHT-
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcch-HHHHHH----HHHc-
Confidence 44555566655 45654 7899999988764 458888899999987 79999999997654 332221 2321
Q ss_pred CCCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 76 NSVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 76 ~~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
+..++++- -+.++++.+++.+...+
T Consensus 86 ---g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 86 ---GKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp ---TSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred ---CCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 22466664 25688889999888765
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0069 Score=56.39 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=45.9
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CCC--CCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GVP--TKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~~--~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||..++..|...| ++|++|+|++++.+.+.+. |.. ...++.+.+.++|+||.|++.+.
T Consensus 191 iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 191 MGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 6888999999999 7899999999988766653 332 22466778889999999998654
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0089 Score=53.46 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=41.7
Q ss_pred CeEEEEcCChhhHHHHHhC----C--CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeC
Q 022170 14 YKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSS 87 (301)
Q Consensus 14 ~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s 87 (301)
.+|.+|+|++++++++.+. + +..++|+++++++||+|++|+|.... ..++.. ..+ .+|..|+..+
T Consensus 154 ~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~--~P~~~~--~~l-----~~g~hi~~iG 224 (313)
T PF02423_consen 154 KEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTP--APVFDA--EWL-----KPGTHINAIG 224 (313)
T ss_dssp SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSE--EESB-G--GGS------TT-EEEE-S
T ss_pred eEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCC--CccccH--HHc-----CCCcEEEEec
Confidence 4799999999988777553 3 34578999999999999999995441 134432 123 3566666666
Q ss_pred CCCHH
Q 022170 88 TIDPQ 92 (301)
Q Consensus 88 t~~p~ 92 (301)
+-.|.
T Consensus 225 s~~~~ 229 (313)
T PF02423_consen 225 SYTPG 229 (313)
T ss_dssp -SSTT
T ss_pred CCCCc
Confidence 66564
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.022 Score=52.70 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=58.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|..++..+...|.+|+++|+++.+.+.....|+... ++++++..+|+||.|+.+... +..-. +.. ..++
T Consensus 213 IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~-i~~~~------l~~--mk~G 282 (413)
T cd00401 213 VGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDI-ITGEH------FEQ--MKDG 282 (413)
T ss_pred HHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHH-HHHHH------Hhc--CCCC
Confidence 5888999999999999999999999888888887543 567888899999999875543 33321 111 2355
Q ss_pred eEEEEeCCC
Q 022170 81 QLLIDSSTI 89 (301)
Q Consensus 81 ~ivid~st~ 89 (301)
.++++.+..
T Consensus 283 gilvnvG~~ 291 (413)
T cd00401 283 AIVCNIGHF 291 (413)
T ss_pred cEEEEeCCC
Confidence 688887743
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.011 Score=54.15 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=53.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCC---C---CCHHHHHhcCCEEEEecCCCccchhhhhcCCCcccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT---K---ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQ 73 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~---~---~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~ 73 (301)
+|...++.+.+.|.+|+++||++++.+.+... +... . .++.+.+.++|+||.|++.+......++. +..+.
T Consensus 178 vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~lit--~~~l~ 255 (370)
T TIGR00518 178 VGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVS--NSLVA 255 (370)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCcCcC--HHHHh
Confidence 47888999999999999999999988777654 2211 1 24566778999999998542210111111 11222
Q ss_pred CCCCCCCeEEEEeCC
Q 022170 74 GGNSVRPQLLIDSST 88 (301)
Q Consensus 74 ~~~~~~~~ivid~st 88 (301)
. ..++.++||.+.
T Consensus 256 ~--mk~g~vIvDva~ 268 (370)
T TIGR00518 256 Q--MKPGAVIVDVAI 268 (370)
T ss_pred c--CCCCCEEEEEec
Confidence 2 235679999873
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0089 Score=53.46 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=47.4
Q ss_pred CeEEEEcCChhhHHHHHhC----CCC--CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeC
Q 022170 14 YKMAVHDVNCNVMKMFSDM----GVP--TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSS 87 (301)
Q Consensus 14 ~~V~~~dr~~~~~~~l~~~----g~~--~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s 87 (301)
.+|.+|||++++.+++.+. +.. .+++.++++++||+|++|++... .++.. ..+ .+|..|+..+
T Consensus 154 ~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~----P~~~~--~~l-----~~G~hi~~iG 222 (315)
T PRK06823 154 RQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE----PLLQA--EDI-----QPGTHITAVG 222 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC----ceeCH--HHc-----CCCcEEEecC
Confidence 5799999999998876542 333 36899999999999999998533 33321 122 3566666666
Q ss_pred CCCHH
Q 022170 88 TIDPQ 92 (301)
Q Consensus 88 t~~p~ 92 (301)
+..|.
T Consensus 223 s~~p~ 227 (315)
T PRK06823 223 ADSPG 227 (315)
T ss_pred CCCcc
Confidence 66664
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.072 Score=52.83 Aligned_cols=121 Identities=12% Similarity=0.140 Sum_probs=84.4
Q ss_pred EEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHH
Q 022170 50 VITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVL 128 (301)
Q Consensus 50 Vi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~ 128 (301)
||+|+|- .. +.+++......+ .++.+|.|.+++...-.+.+.+.+.. . ...|+. .|+.|++.
T Consensus 1 vila~Pv-~~-~~~~~~~~~~~~-----~~~~~vtDv~SvK~~i~~~~~~~l~~-----~-----~~~fvg~HPMaG~e~ 63 (673)
T PRK11861 1 VLLAAPV-AQ-TGPLLARIAPFL-----DASTIVTDAGSTKSDVVAAARAALGA-----R-----IGQFVPGHPIAGRES 63 (673)
T ss_pred CEEEcCH-HH-HHHHHHHHhhhC-----CCCcEEEecCcccHHHHHHHHHhccc-----c-----CCeEEecCCcCcCcc
Confidence 6899994 44 777876654443 35689999999998777766655431 0 134654 68888765
Q ss_pred Hh--------hccceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHH
Q 022170 129 AA--------EAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGV 187 (301)
Q Consensus 129 ~a--------~~g~l~~~~gg---~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~ 187 (301)
.- .+|..++++-. +++.++.++.+++.+|.+++.+.+...-..+-+++.+-..+..++.
T Consensus 64 ~G~~~a~~~Lf~~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~ 133 (673)
T PRK11861 64 SGVDAALADLYVGRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALV 133 (673)
T ss_pred hhhhhhChhHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHH
Confidence 43 25666777733 6778999999999999999999877777777777666665544443
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.042 Score=51.67 Aligned_cols=136 Identities=13% Similarity=0.143 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhcC--CCeEeeCCcch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHHHh
Q 022170 143 EDAYQAAKPLFLSMG--KNTIYCGGAGN-----GAAAKICNNLTMAVSMLGVSEALTLGQS----L--GISASTLTKILN 209 (301)
Q Consensus 143 ~~~~~~~~~ll~~~~--~~~~~~g~~g~-----a~~~k~~~N~~~~~~~~~~~E~~~l~~~----~--G~~~~~~~~~~~ 209 (301)
+.++.++.+.++... ....+.|+.+. ++.+|.+.|.+.+..+...+|++.+.++ + ++|..++.++++
T Consensus 271 ~AvfaR~~S~~k~~r~~~~~~~~g~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr 350 (459)
T PRK09287 271 EAVFARYLSSLKDQRVAASKVLSGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWR 350 (459)
T ss_pred HHHHHHhccccHHHHHHhhcccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhC
Confidence 345555555555432 12233455443 7899999999999999999999999988 4 578999999999
Q ss_pred hcC-CCccccccCC----CCCCcccCCCCCCCCCCCc--chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCC
Q 022170 210 SSS-ARCWSSDSYN----PVPGVMEGVPASRNYGGGF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGH 282 (301)
Q Consensus 210 ~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~ 282 (301)
.|+ .+++++.... .-|++. ..+ +++.| .+......++.++..+-+.|+|+|.+.+++..|+.-...-.
T Consensus 351 ~GcIIRs~lL~~i~~a~~~~~~l~-nl~----~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~ 425 (459)
T PRK09287 351 GGCIIRAQFLQKITDAYEANPDLA-NLL----LDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRTARL 425 (459)
T ss_pred CCCEEeHHHHHHHHHHHHhCCCch-hhc----CCHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Confidence 886 4555543211 101100 000 11112 12334455678999999999999999999977766554433
Q ss_pred C
Q 022170 283 D 283 (301)
Q Consensus 283 g 283 (301)
+
T Consensus 426 ~ 426 (459)
T PRK09287 426 P 426 (459)
T ss_pred c
Confidence 3
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.02 Score=49.93 Aligned_cols=68 Identities=26% Similarity=0.283 Sum_probs=52.8
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhc-CCCccc
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN-GPNGLL 72 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~-~~~~~l 72 (301)
|.+-|.||..+|.+|++--|.-.+ .+...+.|..+ .+.+|+++.+|+|++-+||.. -.+|+. .+.+.+
T Consensus 30 G~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V-~~v~ea~k~ADvim~L~PDe~--q~~vy~~~I~p~L 99 (338)
T COG0059 30 GHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKV-YTVEEAAKRADVVMILLPDEQ--QKEVYEKEIAPNL 99 (338)
T ss_pred HHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEe-ecHHHHhhcCCEEEEeCchhh--HHHHHHHHhhhhh
Confidence 678899999999998876654444 66777778775 689999999999999999755 577776 334444
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.013 Score=52.13 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=46.7
Q ss_pred CeEEEEcCChhhHHHHHhC-----C--CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEe
Q 022170 14 YKMAVHDVNCNVMKMFSDM-----G--VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS 86 (301)
Q Consensus 14 ~~V~~~dr~~~~~~~l~~~-----g--~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~ 86 (301)
.+|.+|+|++++.+++.+. | +.+++++++++.+||+|++|++... .++.. ..+ .+|..|.-.
T Consensus 143 ~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~----P~~~~--~~l-----~pg~hV~ai 211 (301)
T PRK06407 143 KRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT----PIFNR--KYL-----GDEYHVNLA 211 (301)
T ss_pred CEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC----cEecH--HHc-----CCCceEEec
Confidence 4799999999998877543 4 3456899999999999999999543 33321 123 245555555
Q ss_pred CCCCHH
Q 022170 87 STIDPQ 92 (301)
Q Consensus 87 st~~p~ 92 (301)
.+..|.
T Consensus 212 Gs~~p~ 217 (301)
T PRK06407 212 GSNYPN 217 (301)
T ss_pred CCCCCC
Confidence 555554
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.054 Score=43.35 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=26.2
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCCCH
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 91 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p 91 (301)
.++++.+++||+||++++.+.- ++. ..+ .+|.++||++....
T Consensus 71 ~~l~~~~~~ADIVVsa~G~~~~-i~~------~~i-----k~gavVIDvG~~~~ 112 (160)
T PF02882_consen 71 KNLQEITRRADIVVSAVGKPNL-IKA------DWI-----KPGAVVIDVGINYV 112 (160)
T ss_dssp SSHHHHHTTSSEEEE-SSSTT--B-G------GGS------TTEEEEE--CEEE
T ss_pred CcccceeeeccEEeeeeccccc-ccc------ccc-----cCCcEEEecCCccc
Confidence 5678889999999999995542 322 123 36789999986443
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.06 Score=50.84 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CCccccccCCCCCCcccCCC-CCC-CCCC
Q 022170 169 GAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVP-ASR-NYGG 239 (301)
Q Consensus 169 a~~~k~~~N~~~~~~~~~~~E~~~l~~~------~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 239 (301)
++.+|.+.|.+....+...+|++.+.++ .++|..++.++++.|+ .+++++..... .+...+ +.. -+++
T Consensus 312 ~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~---a~~~~~~l~~l~~~~ 388 (467)
T TIGR00873 312 EEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITK---AFAENPDLANLLLAP 388 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHH---HHHcCCChhhhcCCH
Confidence 7899999999999999999999999987 7899999999999886 45555432110 000000 000 0011
Q ss_pred Cc--chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCC
Q 022170 240 GF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 281 (301)
Q Consensus 240 ~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 281 (301)
.| .+......++.++..+-+.|+|+|.+.+++..|++....-
T Consensus 389 ~~~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~ 432 (467)
T TIGR00873 389 YFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTAR 432 (467)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc
Confidence 12 1334455668899999999999999999998888776543
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.021 Score=51.42 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=42.5
Q ss_pred cHHHHHHHH-hCC-CeEEEEcCChhhHHHHHhC-----CCCC--CCCHHHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLM-KAG-YKMAVHDVNCNVMKMFSDM-----GVPT--KETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~-~~G-~~V~~~dr~~~~~~~l~~~-----g~~~--~~s~~e~~~~adiVi~~vp~~ 57 (301)
|...+..|. ..+ -+|++|+|++++.+.+.+. |..+ .+++++++.++|+|+.|+|..
T Consensus 141 A~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~ 205 (326)
T TIGR02992 141 ARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE 205 (326)
T ss_pred HHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC
Confidence 455666775 355 3699999999998887653 4433 578899999999999999853
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.05 Score=42.53 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=45.7
Q ss_pred CCCeEEEEcCChhhHHHHH----hCCCCC--CC----CHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 12 AGYKMAVHDVNCNVMKMFS----DMGVPT--KE----TPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 12 ~G~~V~~~dr~~~~~~~l~----~~g~~~--~~----s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
.|.+|.+|+|+...-+.+. +.|+++ +. ++++.+++||+|+.+++.+.- ++. ..+ .+|.
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~-i~~------~~i-----kpGa 94 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPEK-VPT------EWI-----KPGA 94 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCCc-cCH------HHc-----CCCC
Confidence 3567999999988765543 345432 33 788999999999999996532 221 233 3678
Q ss_pred EEEEeCCCC
Q 022170 82 LLIDSSTID 90 (301)
Q Consensus 82 ivid~st~~ 90 (301)
+++|.+...
T Consensus 95 ~Vidvg~~~ 103 (140)
T cd05212 95 TVINCSPTK 103 (140)
T ss_pred EEEEcCCCc
Confidence 899877544
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.038 Score=48.45 Aligned_cols=62 Identities=11% Similarity=0.222 Sum_probs=45.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|.++|..|.+.|..|+++++.. .++.+.+++||+||.+++.+.- +.. ..+ .+|
T Consensus 170 VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~-i~~------~~v-----k~g 223 (286)
T PRK14175 170 VGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGL-VTK------DVV-----KEG 223 (286)
T ss_pred hHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcc-cCH------HHc-----CCC
Confidence 58888888888888888887532 3677889999999999996532 222 122 356
Q ss_pred eEEEEeCC
Q 022170 81 QLLIDSST 88 (301)
Q Consensus 81 ~ivid~st 88 (301)
.++||.+.
T Consensus 224 avVIDvGi 231 (286)
T PRK14175 224 AVIIDVGN 231 (286)
T ss_pred cEEEEcCC
Confidence 89999875
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.014 Score=54.55 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=45.9
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CCCC--CCCHHHHHhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPT--KETPFEVAEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~~~--~~s~~e~~~~adiVi~~vp~~~~ 59 (301)
||..++..|...|+ +|++++|++++...+.+. |... ..++.+.+.++|+||.|+|.+..
T Consensus 193 iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~ 255 (423)
T PRK00045 193 MGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHP 255 (423)
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCc
Confidence 68889999999997 799999999998777654 4332 23556777899999999986643
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.055 Score=46.96 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=60.8
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||..++..+.+. ++++. ++|+++++.......++...++++++++++|+|+.+.|... ..+++.. .++ .
T Consensus 13 mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~--~~~~~~~---al~----~ 83 (257)
T PRK00048 13 MGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEA--TLENLEF---ALE----H 83 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHH--HHHHHHH---HHH----c
Confidence 788888888764 67765 58998876654433466677899998888999998887333 4444422 232 1
Q ss_pred CCeEEEEeCCCCHHHHHHHHH
Q 022170 79 RPQLLIDSSTIDPQTSRNISA 99 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~ 99 (301)
+..+++-+++.+++...++.+
T Consensus 84 G~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 84 GKPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred CCCEEEECCCCCHHHHHHHHH
Confidence 234666666678887777766
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.034 Score=50.30 Aligned_cols=71 Identities=10% Similarity=0.113 Sum_probs=46.9
Q ss_pred CCeEEEEcCChhhHHHHHhC----C--CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEe
Q 022170 13 GYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS 86 (301)
Q Consensus 13 G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~ 86 (301)
-.+|++|+|++++.+++.+. + +..++++++++++||+|++|+|... -..++.. ..+ .+|..|.-.
T Consensus 154 i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~--~~Pvl~~--~~l-----kpG~hV~aI 224 (346)
T PRK07589 154 IEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT--NATILTD--DMV-----EPGMHINAV 224 (346)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC--CCceecH--HHc-----CCCcEEEec
Confidence 35799999999998776542 3 3446899999999999999998432 1233322 122 345555555
Q ss_pred CCCCHH
Q 022170 87 STIDPQ 92 (301)
Q Consensus 87 st~~p~ 92 (301)
++..|.
T Consensus 225 Gs~~p~ 230 (346)
T PRK07589 225 GGDCPG 230 (346)
T ss_pred CCCCCC
Confidence 555554
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.019 Score=53.27 Aligned_cols=58 Identities=5% Similarity=0.060 Sum_probs=46.7
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-C-CC--CCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-G-VP--TKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g-~~--~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||..++.+|...|. ++++++|++++.+.+.+. + .. ..+++.+.+.++|+||.|++.+.
T Consensus 192 ~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 192 TGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCC
Confidence 68899999999995 799999999999888764 2 22 23455677889999999999664
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.057 Score=47.31 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=41.6
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|..|.+.|..|++++.. +.++.+.+++||+||++++.+.- +.. ..+ .+|.
T Consensus 171 GkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~-i~~------~~i-----k~ga 224 (285)
T PRK14189 171 GKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNV-LTA------DMV-----KPGA 224 (285)
T ss_pred HHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCc-cCH------HHc-----CCCC
Confidence 666666666666666665421 34678889999999999996542 322 233 3578
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||+++
T Consensus 225 vVIDVGi 231 (285)
T PRK14189 225 TVIDVGM 231 (285)
T ss_pred EEEEccc
Confidence 9999885
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.026 Score=50.91 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=42.1
Q ss_pred cHHHHHHHHh-CC-CeEEEEcCChhhHHHHHhC-----CCC--CCCCHHHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM-----GVP--TKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~~-~G-~~V~~~dr~~~~~~~l~~~-----g~~--~~~s~~e~~~~adiVi~~vp~~ 57 (301)
|...+..|.. .+ .+|.+|+|++++.+.+.+. |+. ..+++++++.++|+|+.|+|..
T Consensus 144 a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 144 ARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 4555566654 34 5799999999999888652 443 3578899999999999999854
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.023 Score=52.32 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=46.8
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CCCC--CCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GVPT--KETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~~~--~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||.-.|++|.++| .+|++.||+.+++..+++. |+.+ .+.+.+.+..+|+||+|+..+.
T Consensus 189 m~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 189 MGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCc
Confidence 7888999999999 6799999999999988765 5333 3456667889999999987543
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.023 Score=48.27 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=47.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh--CCC-------CCCCCHHHH-HhcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD--MGV-------PTKETPFEV-AEASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~--~g~-------~~~~s~~e~-~~~adiVi~~vp~~~~~~~~v~ 65 (301)
+|..+|+.|.+.||+|.+.|++++++++... ... .-...+.++ +.++|+++.++.++. ...++
T Consensus 11 vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~--~N~i~ 83 (225)
T COG0569 11 VGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE--VNSVL 83 (225)
T ss_pred HHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH--HHHHH
Confidence 5899999999999999999999999988544 321 112244555 578999999999765 34444
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.031 Score=50.06 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=37.8
Q ss_pred CeEEEEcCChhhHHHHHhC----C---CCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 14 YKMAVHDVNCNVMKMFSDM----G---VPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 14 ~~V~~~dr~~~~~~~l~~~----g---~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
-+|.+|+|+++..+++... + +..++|.++++++||+|+.|+|+..
T Consensus 156 ~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~ 207 (330)
T COG2423 156 REIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE 207 (330)
T ss_pred cEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC
Confidence 4799999999999887643 3 4678899999999999999999643
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.025 Score=54.86 Aligned_cols=59 Identities=12% Similarity=0.247 Sum_probs=46.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCC---HHHH-HhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KET---PFEV-AEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~----~~s---~~e~-~~~adiVi~~vp~~~~ 59 (301)
+|+.+|+.|.++||+|+++|.|+++++.+.+.|... .++ ++++ ++++|.++++++++..
T Consensus 428 ~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~ 494 (558)
T PRK10669 428 VGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYE 494 (558)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHH
Confidence 488999999999999999999999999998876432 112 2222 4689999999998754
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.03 Score=54.70 Aligned_cols=64 Identities=11% Similarity=0.224 Sum_probs=49.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC----CC---HHHH-HhcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ET---PFEV-AEASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s---~~e~-~~~adiVi~~vp~~~~~~~~v~ 65 (301)
+|..+++.|.++|+++++.|.|+++++.+.+.|..+. ++ ++++ ++++|.++++++++.. ...++
T Consensus 411 ~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~-n~~i~ 482 (601)
T PRK03659 411 FGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPED-TMKIV 482 (601)
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHH-HHHHH
Confidence 4788999999999999999999999999988774321 12 2222 4689999999998765 44444
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.063 Score=48.30 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=53.5
Q ss_pred cHHHHHHHHh-CC-CeEEEEcCChhhHHHHHhC-----CC--CCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccc
Q 022170 2 GFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM-----GV--PTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 2 G~~lA~~L~~-~G-~~V~~~dr~~~~~~~l~~~-----g~--~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
|...+..+.. .+ .+|.+|||++++.+++.+. ++ ....++++++.++|+|++|+|... .++. ..+
T Consensus 139 a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~----p~i~---~~l 211 (325)
T PRK08618 139 AKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT----PVFS---EKL 211 (325)
T ss_pred HHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC----cchH---Hhc
Confidence 3445555543 34 4799999999998877652 43 346788999999999999999643 2322 122
Q ss_pred cCCCCCCCeEEEEeCCCCHHH
Q 022170 73 QGGNSVRPQLLIDSSTIDPQT 93 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~ 93 (301)
.+|+.|+...+-.|..
T Consensus 212 -----~~G~hV~~iGs~~p~~ 227 (325)
T PRK08618 212 -----KKGVHINAVGSFMPDM 227 (325)
T ss_pred -----CCCcEEEecCCCCccc
Confidence 3566777777666653
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.29 Score=43.74 Aligned_cols=76 Identities=12% Similarity=0.151 Sum_probs=49.5
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCCh-hhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNC-NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~-~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||..++..+.++ ++++. +|+|++ ++.. ...+.....+..+...+.|+|++|+|+... ...+.. ++.
T Consensus 14 IGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th-~~~~~~----~L~---- 82 (324)
T TIGR01921 14 LGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATD-IPEQAP----YFA---- 82 (324)
T ss_pred HHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccC-HHHHHH----HHH----
Confidence 578888888765 67876 579985 4433 122444445677777889999999997665 444332 332
Q ss_pred CCCeEEEEeCC
Q 022170 78 VRPQLLIDSST 88 (301)
Q Consensus 78 ~~~~ivid~st 88 (301)
.|..+|++.-
T Consensus 83 -aG~NVV~s~~ 92 (324)
T TIGR01921 83 -QFANTVDSFD 92 (324)
T ss_pred -cCCCEEECCC
Confidence 4567777653
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.092 Score=40.60 Aligned_cols=57 Identities=18% Similarity=0.410 Sum_probs=45.0
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-----CCCHHHHHhcCCEEEEecCCCc
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-----KETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-----~~s~~e~~~~adiVi~~vp~~~ 58 (301)
|..+|..|.+.||+|++.|.|++.++.+.+.+..+ +...-+.-+++|+|..+-|.+.
T Consensus 28 G~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~e 89 (134)
T PRK04148 28 YFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRD 89 (134)
T ss_pred CHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHH
Confidence 45689999999999999999999998888776432 2333456788999999998554
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.03 Score=49.17 Aligned_cols=57 Identities=9% Similarity=0.069 Sum_probs=43.2
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHHhCC-----CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMG-----VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~g-----~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.+++..|...| .+|++++|++++.+.+.+.- +....+..+.+..+|+||-|+|..
T Consensus 134 ~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 134 AARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 4788999999999 78999999999988776541 111113345667899999999955
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.03 Score=45.52 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=43.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------CCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-------~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|..+++.|.+.||+|++..|++++.+. ..+++ -.++..++++++|+||.+++.+
T Consensus 10 vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 10 VGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred HHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 4889999999999999999999998877 33322 1234567788999999999853
|
... |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.054 Score=48.74 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=52.1
Q ss_pred CcHHHHHHHHhC-C-CeEEEEcCChhhHHHHHhC-----C--CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcc
Q 022170 1 MGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSDM-----G--VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGL 71 (301)
Q Consensus 1 mG~~lA~~L~~~-G-~~V~~~dr~~~~~~~l~~~-----g--~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~ 71 (301)
||...+..|... + ..|.+|||++++.+++.+. + +..+++.+++++ +|+|++|+|+.. .++.. ..
T Consensus 140 qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~----P~~~~--~~ 212 (326)
T PRK06046 140 QARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK----PVVKA--EW 212 (326)
T ss_pred HHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC----cEecH--HH
Confidence 355566666532 3 3688999999998877653 3 234678899887 999999999543 33321 12
Q ss_pred ccCCCCCCCeEEEEeCCCCHH
Q 022170 72 LQGGNSVRPQLLIDSSTIDPQ 92 (301)
Q Consensus 72 l~~~~~~~~~ivid~st~~p~ 92 (301)
+ .+|+.|...++..|.
T Consensus 213 l-----~~g~hV~~iGs~~p~ 228 (326)
T PRK06046 213 I-----KEGTHINAIGADAPG 228 (326)
T ss_pred c-----CCCCEEEecCCCCCc
Confidence 2 356666666666654
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.08 Score=47.17 Aligned_cols=55 Identities=20% Similarity=0.156 Sum_probs=39.1
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHh----C----C----CCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD----M----G----VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~----~----g----~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.++|..++..|+ +|.++|+++++.+.... . + ++.+++. +.+++||+||+++..
T Consensus 13 vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~ 80 (307)
T PRK06223 13 VGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGV 80 (307)
T ss_pred HHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCC
Confidence 68999999999876 99999998876543211 1 1 1123445 567999999999743
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.044 Score=48.80 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=41.5
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHH----HhC--------CCCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMF----SDM--------GVPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l----~~~--------g~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||..+|..|+.+|+ +|.++|++++..+.. .+. .++.+.+.++ +++||+||++++.+.
T Consensus 12 vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p~ 81 (305)
T TIGR01763 12 VGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLPR 81 (305)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCCC
Confidence 79999999999887 899999977654311 111 1334467766 789999999999643
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.027 Score=51.70 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=35.5
Q ss_pred CeEEEEcCChhhHHHHHhC------C---CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 14 YKMAVHDVNCNVMKMFSDM------G---VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 14 ~~V~~~dr~~~~~~~l~~~------g---~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
-+|.+|+|++++++++.+. | +.+++++++++++||+|++|++..
T Consensus 182 ~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 182 DTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred cEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 3799999999998776542 2 345789999999999999999753
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.12 Score=45.39 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=41.7
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|..|.+.|..|+++++. +.++.+.+++||+||.+++-+.- +.. ..+ .+|.
T Consensus 172 G~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~-v~~------~~v-----k~ga 225 (285)
T PRK10792 172 GRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGF-IPG------EWI-----KPGA 225 (285)
T ss_pred HHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCccc-ccH------HHc-----CCCc
Confidence 666666666666666666532 34688889999999999975443 332 122 3578
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||.+.
T Consensus 226 vVIDvGi 232 (285)
T PRK10792 226 IVIDVGI 232 (285)
T ss_pred EEEEccc
Confidence 9999875
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.042 Score=48.46 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=43.0
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-----C-CC--CCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----G-VP--TKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-----g-~~--~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|++++..|.+.|. +|+++||++++++.+.+. . .. ...++.+.+.++|+||-|+|-.
T Consensus 138 aaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 138 AGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 36789999999997 799999999999888653 1 11 1234455677899999999854
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.027 Score=52.55 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=37.5
Q ss_pred HhCCCeEEEEcCChhhHHHHHhC------------CCCCCCCHHHHHhcCCEEEEecCCC
Q 022170 10 MKAGYKMAVHDVNCNVMKMFSDM------------GVPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 10 ~~~G~~V~~~dr~~~~~~~l~~~------------g~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
..+|++|.+||+++++.+..... .+..++++.+++++||+||+++|..
T Consensus 26 ~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ai~~~ 85 (423)
T cd05297 26 ELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINTIQVG 85 (423)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEeeEec
Confidence 45688999999999887655431 1335678899999999999999954
|
linked to 3D####ucture |
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.24 Score=44.83 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=62.0
Q ss_pred CcHHHHHHHHhC--CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCC--ccchhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKA--GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSS--SHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~--G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~--~~~~~~v~~~~~~~l~~ 74 (301)
||...+..+.+. ++++. ++|+++++.+++.+. |+...++.++++++.|++++++|+. ...-.++... .++
T Consensus 13 ~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~---aL~- 88 (343)
T TIGR01761 13 FGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSALARA---LLA- 88 (343)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHH---HHh-
Confidence 355566667664 46755 679999999888764 7778899999999899999998752 1101222211 221
Q ss_pred CCCCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 75 GNSVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 75 ~~~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.|+-|+--.-+..++++++.+..++
T Consensus 89 ----aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 89 ----RGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred ----CCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 3334444455557888888877765
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.054 Score=47.16 Aligned_cols=55 Identities=22% Similarity=0.342 Sum_probs=41.6
Q ss_pred CcHHHHHHHHhCC----CeEEEEcCChhhHHHHHh-----------CCCCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAG----YKMAVHDVNCNVMKMFSD-----------MGVPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G----~~V~~~dr~~~~~~~l~~-----------~g~~~~~s~~e~~~~adiVi~~vp 55 (301)
||..+|..|+..| .+|.++|+++++.+.... ..++.++++.+++++||+|+++..
T Consensus 10 vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 10 VGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred HHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCC
Confidence 6889999999988 789999999877543322 123335667889999999999764
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.069 Score=47.45 Aligned_cols=56 Identities=21% Similarity=0.196 Sum_probs=39.4
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHH----HHhC----C----CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKM----FSDM----G----VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~----l~~~----g----~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
||..+|..|+.+|+ +|+++|+++++.+. +... + +..+++. +.+++||+||+++..+
T Consensus 9 vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~p 77 (300)
T cd01339 9 VGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGIP 77 (300)
T ss_pred HHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCCC
Confidence 78999999998887 99999999876431 1111 1 2223444 5689999999988543
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.047 Score=40.85 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=45.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC----CC---HHHH-HhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ET---PFEV-AEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s---~~e~-~~~adiVi~~vp~~~~ 59 (301)
+|..+++.|.+.+.+|++.+++++.++.+.+.|..+. .+ +.++ +++++.|+++.+++..
T Consensus 9 ~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 9 IGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHH
Confidence 4788999999977799999999999999998874321 12 2222 4689999999987654
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.15 Score=44.94 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=41.5
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.+||.-|.+.|..|++++.. +.++++.+++||+|+.++.-+.- +.. .++ .+|.
T Consensus 180 GkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~~-i~~------~~v-----k~ga 233 (299)
T PLN02516 180 GLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAMM-IKG------DWI-----KPGA 233 (299)
T ss_pred hHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCc-cCH------HHc-----CCCC
Confidence 666666666666666665421 34678889999999999985432 222 123 3678
Q ss_pred EEEEeCCC
Q 022170 82 LLIDSSTI 89 (301)
Q Consensus 82 ivid~st~ 89 (301)
++||++..
T Consensus 234 vVIDvGin 241 (299)
T PLN02516 234 AVIDVGTN 241 (299)
T ss_pred EEEEeecc
Confidence 99998864
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.36 Score=45.68 Aligned_cols=111 Identities=12% Similarity=0.118 Sum_probs=75.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHHHhhcC-CCccccccCCCCCCcccCCC-CCC-CC
Q 022170 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQS----L--GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVP-ASR-NY 237 (301)
Q Consensus 167 g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~----~--G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~-~~ 237 (301)
+.++.+|.+.|.+.+..+...+|++.+.++ + ++|..++.++++.|. .+++++..... .+...+ +.. -+
T Consensus 316 ~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~---a~~~~~~l~nl~~ 392 (470)
T PTZ00142 316 DKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKN---AFKKNPQLDLLFL 392 (470)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHH---HHhcCCChhhhcC
Confidence 678999999999999999999999999873 4 899999999999886 45555432110 000000 000 01
Q ss_pred CCCcc--hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHC
Q 022170 238 GGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 280 (301)
Q Consensus 238 ~~~~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 280 (301)
++.|. +......++.++..|-+.|+|+|.+.+++..|+.-...
T Consensus 393 ~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~ 437 (470)
T PTZ00142 393 DPDFNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQ 437 (470)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence 11111 23344556888999999999999999999966555433
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.17 Score=41.65 Aligned_cols=79 Identities=23% Similarity=0.259 Sum_probs=49.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH----HHHHhCCC---CCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM----KMFSDMGV---PTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQ 73 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~----~~l~~~g~---~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~ 73 (301)
.|.+||.-|.+.|..|+++|.+.-.. ..+..... ....++.+.+++|||||++++.+. +. +. ...+
T Consensus 74 VGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~--~~--i~--~d~i- 146 (197)
T cd01079 74 VGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPN--YK--VP--TELL- 146 (197)
T ss_pred chHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCC--Cc--cC--HHHc-
Confidence 48999999999999999997543221 00100000 001126788999999999999543 21 11 1233
Q ss_pred CCCCCCCeEEEEeCCCC
Q 022170 74 GGNSVRPQLLIDSSTID 90 (301)
Q Consensus 74 ~~~~~~~~ivid~st~~ 90 (301)
.+|.++||.++..
T Consensus 147 ----k~GavVIDVGi~~ 159 (197)
T cd01079 147 ----KDGAICINFASIK 159 (197)
T ss_pred ----CCCcEEEEcCCCc
Confidence 3578999998653
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.18 Score=44.20 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=40.7
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|.-|.+.|..|+++.. .+.++.+.+++||+||++++-+.- +.. ..+ .+|.
T Consensus 170 GkPla~lL~~~~atVtichs--------------~T~~l~~~~~~ADIvI~AvG~~~~-i~~------~~v-----k~Ga 223 (284)
T PRK14170 170 GKPVAQLLLNENATVTIAHS--------------RTKDLPQVAKEADILVVATGLAKF-VKK------DYI-----KPGA 223 (284)
T ss_pred hHHHHHHHHHCCCEEEEeCC--------------CCCCHHHHHhhCCEEEEecCCcCc-cCH------HHc-----CCCC
Confidence 55666666655555655532 124678889999999999995542 222 123 3578
Q ss_pred EEEEeCCCC
Q 022170 82 LLIDSSTID 90 (301)
Q Consensus 82 ivid~st~~ 90 (301)
++||+++..
T Consensus 224 vVIDvGin~ 232 (284)
T PRK14170 224 IVIDVGMDR 232 (284)
T ss_pred EEEEccCcc
Confidence 999988643
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.17 Score=44.57 Aligned_cols=62 Identities=10% Similarity=0.171 Sum_probs=39.2
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|.-|.++|..|+++.. .+.++++.+++||+||++++-+.- +.. .++ .+|.
T Consensus 171 GkPla~lL~~~~atVtv~hs--------------~T~~l~~~~~~ADIvIsAvGkp~~-i~~------~~i-----k~ga 224 (297)
T PRK14186 171 GKPLALMLLAANATVTIAHS--------------RTQDLASITREADILVAAAGRPNL-IGA------EMV-----KPGA 224 (297)
T ss_pred hHHHHHHHHHCCCEEEEeCC--------------CCCCHHHHHhhCCEEEEccCCcCc-cCH------HHc-----CCCC
Confidence 45555555555555554431 134678888999999999995542 222 123 3578
Q ss_pred EEEEeCCC
Q 022170 82 LLIDSSTI 89 (301)
Q Consensus 82 ivid~st~ 89 (301)
+|||++..
T Consensus 225 vVIDvGin 232 (297)
T PRK14186 225 VVVDVGIH 232 (297)
T ss_pred EEEEeccc
Confidence 99998854
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.19 Score=44.06 Aligned_cols=63 Identities=11% Similarity=0.176 Sum_probs=41.4
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|..|.+.|..|++++. .+.++++..++||+|+.+++-+.- +.. .++ .+|.
T Consensus 172 GkPla~lL~~~~atVt~chs--------------~T~~l~~~~~~ADIvIsAvGk~~~-i~~------~~i-----k~ga 225 (284)
T PRK14177 172 GKPMAMLLTEMNATVTLCHS--------------KTQNLPSIVRQADIIVGAVGKPEF-IKA------DWI-----SEGA 225 (284)
T ss_pred hHHHHHHHHHCCCEEEEeCC--------------CCCCHHHHHhhCCEEEEeCCCcCc-cCH------HHc-----CCCC
Confidence 55666666666666665542 134678889999999999995542 222 233 3678
Q ss_pred EEEEeCCCC
Q 022170 82 LLIDSSTID 90 (301)
Q Consensus 82 ivid~st~~ 90 (301)
++||.++..
T Consensus 226 vVIDvGin~ 234 (284)
T PRK14177 226 VLLDAGYNP 234 (284)
T ss_pred EEEEecCcc
Confidence 999998643
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.18 Score=44.29 Aligned_cols=62 Identities=11% Similarity=0.188 Sum_probs=39.5
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|.-|.+.|..|+++.. .+.++++.+++||+||++++-+.- +.. .++ .+|.
T Consensus 168 GkPla~lL~~~~aTVtichs--------------~T~~l~~~~~~ADIvIsAvGkp~~-i~~------~~v-----k~Ga 221 (287)
T PRK14173 168 GKPLAALLLREDATVTLAHS--------------KTQDLPAVTRRADVLVVAVGRPHL-ITP------EMV-----RPGA 221 (287)
T ss_pred HHHHHHHHHHCCCEEEEeCC--------------CCCCHHHHHhhCCEEEEecCCcCc-cCH------HHc-----CCCC
Confidence 55555555555555555432 124678889999999999995542 221 233 3678
Q ss_pred EEEEeCCC
Q 022170 82 LLIDSSTI 89 (301)
Q Consensus 82 ivid~st~ 89 (301)
++||.++.
T Consensus 222 vVIDVGin 229 (287)
T PRK14173 222 VVVDVGIN 229 (287)
T ss_pred EEEEccCc
Confidence 99998864
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.044 Score=50.84 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=47.2
Q ss_pred cHHHHHHHHhCCCeEEEE------cCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 2 GFRMASNLMKAGYKMAVH------DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~------dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
|.+.|.+|...|++|++- |.+.+..+.+.+.|..+ .++.|+++.||+|++.+|+.. -..+..
T Consensus 48 G~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt~--q~~v~~ 115 (487)
T PRK05225 48 GLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDKQ--HSDVVR 115 (487)
T ss_pred HHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChHH--HHHHHH
Confidence 778888999999999843 33345566666678765 689999999999999999763 455553
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.088 Score=40.22 Aligned_cols=91 Identities=21% Similarity=0.340 Sum_probs=54.7
Q ss_pred CcHHHHHHHHh-CCCeEE-EEcCChhh-H----HHH---HhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCc
Q 022170 1 MGFRMASNLMK-AGYKMA-VHDVNCNV-M----KMF---SDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 1 mG~~lA~~L~~-~G~~V~-~~dr~~~~-~----~~l---~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
||+.+++.+.+ .|+++. +++|+++. . ..+ ...|....++++++...+|+||-+.. +.. +.+.+..
T Consensus 12 MG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~-p~~-~~~~~~~--- 86 (124)
T PF01113_consen 12 MGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTN-PDA-VYDNLEY--- 86 (124)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH-HHHHHHH---
T ss_pred HHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCC-hHH-hHHHHHH---
Confidence 89999999988 778865 56888721 1 111 13467778899999999999998873 444 5554432
Q ss_pred cccCCCCCCCeEEEEeCCCCHHHHHHHHHH
Q 022170 71 LLQGGNSVRPQLLIDSSTIDPQTSRNISAA 100 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~p~~~~~~~~~ 100 (301)
.++ .+-.+|+=+|+.+++...++.+.
T Consensus 87 ~~~----~g~~~ViGTTG~~~~~~~~l~~~ 112 (124)
T PF01113_consen 87 ALK----HGVPLVIGTTGFSDEQIDELEEL 112 (124)
T ss_dssp HHH----HT-EEEEE-SSSHHHHHHHHHHH
T ss_pred HHh----CCCCEEEECCCCCHHHHHHHHHH
Confidence 222 12245555566666666666554
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.19 Score=43.86 Aligned_cols=61 Identities=15% Similarity=0.258 Sum_probs=39.8
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.+++.-|.++|..|++++. .+.++.+.+++||+||.+++-+.- +.. .++ .+|.
T Consensus 171 GkPla~lL~~~~AtVt~chs--------------~T~~l~~~~~~ADIvIsAvGkp~~-i~~------~~i-----k~ga 224 (278)
T PRK14172 171 GKPVAQLLLNENATVTICHS--------------KTKNLKEVCKKADILVVAIGRPKF-IDE------EYV-----KEGA 224 (278)
T ss_pred hHHHHHHHHHCCCEEEEeCC--------------CCCCHHHHHhhCCEEEEcCCCcCc-cCH------HHc-----CCCc
Confidence 55566666555555555542 134678889999999999995542 222 123 3578
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||.+.
T Consensus 225 vVIDvGi 231 (278)
T PRK14172 225 IVIDVGT 231 (278)
T ss_pred EEEEeec
Confidence 9999864
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.097 Score=51.38 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=48.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC----CCH---HHH-HhcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETP---FEV-AEASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s~---~e~-~~~adiVi~~vp~~~~~~~~v~ 65 (301)
+|..+++.|.++|+++++.|.|+++++.+.+.|..+. +++ +++ ++++|.++++++++.. ...++
T Consensus 411 ~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~-n~~i~ 482 (621)
T PRK03562 411 FGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT-SLQLV 482 (621)
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHH-HHHHH
Confidence 4788999999999999999999999999988774331 222 222 4589999999998765 44443
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.19 Score=43.93 Aligned_cols=39 Identities=8% Similarity=0.121 Sum_probs=28.3
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 88 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 88 (301)
.++++..++||+||++++-+.- +.. .++ .+|.++||++.
T Consensus 192 ~nl~~~~~~ADIvIsAvGkp~~-i~~------~~v-----k~GavVIDvGi 230 (282)
T PRK14166 192 KDLSLYTRQADLIIVAAGCVNL-LRS------DMV-----KEGVIVVDVGI 230 (282)
T ss_pred CCHHHHHhhCCEEEEcCCCcCc-cCH------HHc-----CCCCEEEEecc
Confidence 4688889999999999996543 222 123 36789999885
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.071 Score=47.54 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=41.9
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhHHHHHhC--------C--CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM--------G--VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~--------g--~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.++|..|+..| ++|.++||++++++.+... + ........+.+++||+||++...+
T Consensus 11 vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 11 VGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence 5889999999999 6899999999987655432 1 112223345578999999999864
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.17 Score=44.31 Aligned_cols=61 Identities=11% Similarity=0.214 Sum_probs=40.8
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|.-|.+.|..|++++. .+.++.+.+++||+||.+++.+.- +.. ..+ .+|.
T Consensus 171 G~Pla~lL~~~~atVt~chs--------------~t~~l~~~~~~ADIvI~AvG~p~~-i~~------~~i-----k~ga 224 (284)
T PRK14190 171 GKPVGQLLLNENATVTYCHS--------------KTKNLAELTKQADILIVAVGKPKL-ITA------DMV-----KEGA 224 (284)
T ss_pred HHHHHHHHHHCCCEEEEEeC--------------CchhHHHHHHhCCEEEEecCCCCc-CCH------HHc-----CCCC
Confidence 66666666666666666542 124678889999999999985442 221 123 3578
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||.+.
T Consensus 225 vVIDvGi 231 (284)
T PRK14190 225 VVIDVGV 231 (284)
T ss_pred EEEEeec
Confidence 9999875
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.069 Score=47.01 Aligned_cols=58 Identities=17% Similarity=0.328 Sum_probs=42.2
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCC-----CCCCC---CHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMG-----VPTKE---TPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g-----~~~~~---s~~e~~~~adiVi~~vp~~~ 58 (301)
+|++++..|.+.|. +|+++||++++.+.+.+.- +.... ++.+...++|+||-|+|...
T Consensus 136 aarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~ 202 (282)
T TIGR01809 136 TSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV 202 (282)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence 57889999999996 6999999999998887531 11111 22344567899999998543
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.22 Score=43.63 Aligned_cols=39 Identities=8% Similarity=0.163 Sum_probs=28.3
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 88 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 88 (301)
.++++.+++||+||++++-+.- +.. .++ .+|.++||.+.
T Consensus 191 ~~l~~~~~~ADIvI~AvG~p~~-i~~------~~v-----k~GavVIDvGi 229 (282)
T PRK14169 191 RNLKQLTKEADILVVAVGVPHF-IGA------DAV-----KPGAVVIDVGI 229 (282)
T ss_pred CCHHHHHhhCCEEEEccCCcCc-cCH------HHc-----CCCcEEEEeec
Confidence 4678889999999999996543 222 133 35789999875
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.19 Score=42.80 Aligned_cols=78 Identities=22% Similarity=0.209 Sum_probs=53.9
Q ss_pred EEEEcCChhhHHHHHhC-CCCCCCCHHHHH-hcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCC---C
Q 022170 16 MAVHDVNCNVMKMFSDM-GVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI---D 90 (301)
Q Consensus 16 V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~-~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~---~ 90 (301)
|.+||+++++.+.+.+. |+...+++++.+ .+.|+|++|.|++. ..++... .++. +..+++ .|.. +
T Consensus 5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~--H~e~a~~---aL~a----GkhVl~-~s~gAlad 74 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEA--VKEYAEK---ILKN----GKDLLI-MSVGALAD 74 (229)
T ss_pred EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHH--HHHHHHH---HHHC----CCCEEE-ECCcccCC
Confidence 45799999999887664 677888999986 57999999999665 4555432 3321 223555 4543 5
Q ss_pred HHHHHHHHHHHhh
Q 022170 91 PQTSRNISAAVSN 103 (301)
Q Consensus 91 p~~~~~~~~~~~~ 103 (301)
.+..+++.+..++
T Consensus 75 ~e~~~~l~~aA~~ 87 (229)
T TIGR03855 75 RELRERLREVARS 87 (229)
T ss_pred HHHHHHHHHHHHh
Confidence 5777777777664
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.21 Score=43.67 Aligned_cols=61 Identities=11% Similarity=0.158 Sum_probs=38.8
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|..|.++|..|++++. .+.++.+..++||+||++++-+.- +.. .++ .+|.
T Consensus 171 GkPla~lL~~~~ATVt~chs--------------~T~dl~~~~k~ADIvIsAvGkp~~-i~~------~~v-----k~ga 224 (282)
T PRK14180 171 GKPVSQLLLNAKATVTTCHR--------------FTTDLKSHTTKADILIVAVGKPNF-ITA------DMV-----KEGA 224 (282)
T ss_pred hHHHHHHHHHCCCEEEEEcC--------------CCCCHHHHhhhcCEEEEccCCcCc-CCH------HHc-----CCCc
Confidence 55555555555555555432 124677788999999999996543 322 123 3578
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||.+.
T Consensus 225 vVIDvGi 231 (282)
T PRK14180 225 VVIDVGI 231 (282)
T ss_pred EEEEecc
Confidence 9999875
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.25 Score=43.32 Aligned_cols=40 Identities=8% Similarity=0.104 Sum_probs=28.8
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 89 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 89 (301)
.++.+.+++||+||++++-+.- +.. .++ .+|.++||++..
T Consensus 195 ~~l~~~~k~ADIvV~AvGkp~~-i~~------~~i-----k~GavVIDvGin 234 (284)
T PRK14193 195 RDLAAHTRRADIIVAAAGVAHL-VTA------DMV-----KPGAAVLDVGVS 234 (284)
T ss_pred CCHHHHHHhCCEEEEecCCcCc-cCH------HHc-----CCCCEEEEcccc
Confidence 4788889999999999995542 222 123 357899998753
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.03 E-value=1.3 Score=37.95 Aligned_cols=243 Identities=13% Similarity=0.150 Sum_probs=123.0
Q ss_pred CcHHHHHHHHhCCC----eEEEEcCChhhHHH-HHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAGY----KMAVHDVNCNVMKM-FSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G~----~V~~~dr~~~~~~~-l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
|..++++.+.+.|. +++.+-.+...... +...|...+.+..++++.+|++++++. +.. +.+++.+.....
T Consensus 11 ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svK-p~~-i~~vls~~~~~~--- 85 (267)
T KOG3124|consen 11 MAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVK-PQV-IESVLSEIKPKV--- 85 (267)
T ss_pred hHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeec-chh-HHHHhhcCcccc---
Confidence 44566777777774 45555443222333 666788877777899999999999998 666 888887754432
Q ss_pred CCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecC---CHHHHHHHHH
Q 022170 76 NSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKP 151 (301)
Q Consensus 76 ~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ 151 (301)
.++++++-+ -++.-++. .+.+.. ..+++-. +...|....+|. .++.-| ..+..+.++.
T Consensus 86 --~~~~iivS~aaG~tl~~l---~~~l~~-----------~~rviRv-mpNtp~~v~eg~-sv~~~g~~~~~~D~~l~~~ 147 (267)
T KOG3124|consen 86 --SKGKIIVSVAAGKTLSSL---ESKLSP-----------PTRVIRV-MPNTPSVVGEGA-SVYAIGCHATNEDLELVEE 147 (267)
T ss_pred --ccceEEEEEeecccHHHH---HHhcCC-----------CCceEEe-cCCChhhhhcCc-EEEeeCCCcchhhHHHHHH
Confidence 245677644 33333322 222211 0122211 122333444555 344433 3455688999
Q ss_pred HHHhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCccccccCCCCCCcc
Q 022170 152 LFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGVM 228 (301)
Q Consensus 152 ll~~~~~~~~~~g~--~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 228 (301)
++...|... .+-+ +.....+-=..-.+.+..+-.++ .-+-+.|++.+..+++..+.- |..-+...-..-|..+
T Consensus 148 ll~~vG~~~-evpE~~iDavTgLsGSgPAy~f~~ieaLa---dGgVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~L 223 (267)
T KOG3124|consen 148 LLSAVGLCE-EVPEKCIDAVTGLSGSGPAYVFVAIEALA---DGGVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQL 223 (267)
T ss_pred HHHhcCcce-eCcHHhhhHHhhccCCcHHHHHHHHHHHh---ccccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHH
Confidence 999988632 2211 11111111111122222222222 344578888887777755542 1111100001112222
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCC
Q 022170 229 EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 281 (301)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 281 (301)
+ +.-.+|+.+.. +.+...++-|++.-++.++.+--+++.+.|
T Consensus 224 k----d~V~SPgG~TI-------~glh~LE~ggfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124|consen 224 K----DDVCSPGGTTI-------YGLHALEKGGFRSGLINAVEAATKRARELG 265 (267)
T ss_pred h----CCCCCCCcchH-------HHHHHHHhCCchhHHHHHHHHHHHHHHHhc
Confidence 1 11123433222 334455677888888888877777766544
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.24 Score=43.45 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=39.9
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|.-|.+.|..|++++. .+.++.+.+++||+||.++.-+.- +.. .++ .+|.
T Consensus 177 GkPla~lL~~~~atVtv~hs--------------~T~~l~~~~~~ADIvv~AvG~p~~-i~~------~~v-----k~ga 230 (287)
T PRK14176 177 GKPMAAMLLNRNATVSVCHV--------------FTDDLKKYTLDADILVVATGVKHL-IKA------DMV-----KEGA 230 (287)
T ss_pred HHHHHHHHHHCCCEEEEEec--------------cCCCHHHHHhhCCEEEEccCCccc-cCH------HHc-----CCCc
Confidence 55566666555555655542 234678888999999999985442 221 133 3578
Q ss_pred EEEEeCCC
Q 022170 82 LLIDSSTI 89 (301)
Q Consensus 82 ivid~st~ 89 (301)
++||++..
T Consensus 231 vVIDvGin 238 (287)
T PRK14176 231 VIFDVGIT 238 (287)
T ss_pred EEEEeccc
Confidence 99998753
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.25 Score=43.53 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=39.8
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.+++.-|.++|..|++++.. +.++.+.+++||+||++++-+.- +.. .++ .+|.
T Consensus 173 GkPla~lL~~~~aTVt~chs~--------------T~~l~~~~~~ADIvVsAvGkp~~-i~~------~~i-----k~ga 226 (294)
T PRK14187 173 GKPMACLLLGENCTVTTVHSA--------------TRDLADYCSKADILVAAVGIPNF-VKY------SWI-----KKGA 226 (294)
T ss_pred hHHHHHHHhhCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCc-cCH------HHc-----CCCC
Confidence 555565555555555555421 24678889999999999996543 322 123 3578
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||++.
T Consensus 227 iVIDVGi 233 (294)
T PRK14187 227 IVIDVGI 233 (294)
T ss_pred EEEEecc
Confidence 9999875
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.2 Score=43.74 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=27.4
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 88 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 88 (301)
.++.+.+++||+||.+++-+.- +.. .++ ++|.++||.+.
T Consensus 187 ~~L~~~~~~ADIvI~Avgk~~l-v~~------~~v-----k~GavVIDVgi 225 (279)
T PRK14178 187 ENLKAELRQADILVSAAGKAGF-ITP------DMV-----KPGATVIDVGI 225 (279)
T ss_pred hHHHHHHhhCCEEEECCCcccc-cCH------HHc-----CCCcEEEEeec
Confidence 4678889999999999984432 221 123 36789999875
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.43 Score=42.88 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=60.4
Q ss_pred HHHHHHHhCCC--e-EEEEcCChhhHHHHHhC-CC-CCCCCHHHHHhc--CCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 4 RMASNLMKAGY--K-MAVHDVNCNVMKMFSDM-GV-PTKETPFEVAEA--SDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 4 ~lA~~L~~~G~--~-V~~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~~--adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
..+..+.+.+. . |.++|+++++++.+.+. |+ ...+|+++++++ .|+|++|+|++.. ..-+.. .++.
T Consensus 18 ~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H-~e~~~~----AL~a-- 90 (342)
T COG0673 18 AHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH-AELALA----ALEA-- 90 (342)
T ss_pred HhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh-HHHHHH----HHhc--
Confidence 35556666653 3 55789999998887765 65 378899999875 5999999998765 333322 2221
Q ss_pred CCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 77 SVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 77 ~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
+..++++- =+.++++++++.+..++
T Consensus 91 --GkhVl~EKPla~t~~ea~~l~~~a~~ 116 (342)
T COG0673 91 --GKHVLCEKPLALTLEEAEELVELARK 116 (342)
T ss_pred --CCEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 22344443 25677888888877765
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.12 Score=46.22 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=40.7
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhHHH----HHhCC-----CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKM----FSDMG-----VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~~~----l~~~g-----~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.++|..|+..| ++|.++|+++++.+. +.... ....++..+.+++||+||+|.+.+
T Consensus 11 VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~ 78 (308)
T cd05292 11 VGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence 4889999999999 689999999887653 32211 011122336689999999999975
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.3 Score=42.74 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=39.0
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.+++.-|.+.|..|++++.. +.++++.+++||+|+++++-+.- +.. .++ .+|.
T Consensus 170 GkPla~lL~~~~AtVtichs~--------------T~nl~~~~~~ADIvI~AvGk~~~-i~~------~~i-----k~ga 223 (282)
T PRK14182 170 GKPMAMMLLERHATVTIAHSR--------------TADLAGEVGRADILVAAIGKAEL-VKG------AWV-----KEGA 223 (282)
T ss_pred hHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCc-cCH------HHc-----CCCC
Confidence 555555555555555554321 34677888999999999995442 222 123 3578
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||.+.
T Consensus 224 iVIDvGi 230 (282)
T PRK14182 224 VVIDVGM 230 (282)
T ss_pred EEEEeec
Confidence 9999875
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.31 Score=42.81 Aligned_cols=61 Identities=13% Similarity=0.243 Sum_probs=39.8
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.+++.-|.+.|..|++++. .+.++.+.+++||+|+.++.-+.- +..- ++ .+|.
T Consensus 172 GkPla~lL~~~~ATVtichs--------------~T~~L~~~~~~ADIvV~AvGkp~~-i~~~------~v-----k~Ga 225 (288)
T PRK14171 172 GKPLSALLLKENCSVTICHS--------------KTHNLSSITSKADIVVAAIGSPLK-LTAE------YF-----NPES 225 (288)
T ss_pred hHHHHHHHHHCCCEEEEeCC--------------CCCCHHHHHhhCCEEEEccCCCCc-cCHH------Hc-----CCCC
Confidence 55666666555555555542 124678888999999999995543 3321 22 3578
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||++.
T Consensus 226 vVIDvGi 232 (288)
T PRK14171 226 IVIDVGI 232 (288)
T ss_pred EEEEeec
Confidence 9999875
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.31 Score=42.65 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=39.3
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|..|.++|..|+++.. .+.++.+.+++||+|+++++.+.- +.. .++ .+|.
T Consensus 170 G~Pla~lL~~~~AtVti~hs--------------~T~~l~~~~~~ADIvV~AvGkp~~-i~~------~~v-----k~ga 223 (281)
T PRK14183 170 GKPMAALLLNANATVDICHI--------------FTKDLKAHTKKADIVIVGVGKPNL-ITE------DMV-----KEGA 223 (281)
T ss_pred hHHHHHHHHHCCCEEEEeCC--------------CCcCHHHHHhhCCEEEEecCcccc-cCH------HHc-----CCCc
Confidence 55555555555555554432 124577889999999999985542 222 123 3578
Q ss_pred EEEEeCCC
Q 022170 82 LLIDSSTI 89 (301)
Q Consensus 82 ivid~st~ 89 (301)
++||+++.
T Consensus 224 vvIDvGin 231 (281)
T PRK14183 224 IVIDIGIN 231 (281)
T ss_pred EEEEeecc
Confidence 99998853
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.095 Score=46.97 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=50.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh----C-----------CCC-------CCCCH-HHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD----M-----------GVP-------TKETP-FEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~----~-----------g~~-------~~~s~-~e~~~~adiVi~~vp~~ 57 (301)
||.+||..+..+|++++..|.|..-++.-.. . +.+ ...++ -+-++++|.|+-++-.+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 9999999999999999999998655432111 0 111 11111 12356899998777766
Q ss_pred ccchhhhhcCCCccccCCCCCCCe-EEEEeCCCCHH
Q 022170 58 SHQVLDVYNGPNGLLQGGNSVRPQ-LLIDSSTIDPQ 92 (301)
Q Consensus 58 ~~~~~~v~~~~~~~l~~~~~~~~~-ivid~st~~p~ 92 (301)
-....+++.+++.+.+ +.+ .-.++|+.++.
T Consensus 81 l~Lk~~l~~~le~v~~-----~~~i~gsntSs~~~~ 111 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEP-----PKCIRGSNTSSLDIN 111 (380)
T ss_pred HHHHHHHHHHHHhhcC-----CcceeeeccccCChH
Confidence 4423444444444442 222 33455555554
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.41 Score=41.73 Aligned_cols=93 Identities=15% Similarity=0.301 Sum_probs=59.3
Q ss_pred CcHHHHHHHHh-CCCeEE-EEcCC-hhhH----HHHHh---CCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCc
Q 022170 1 MGFRMASNLMK-AGYKMA-VHDVN-CNVM----KMFSD---MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 1 mG~~lA~~L~~-~G~~V~-~~dr~-~~~~----~~l~~---~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
||..+++.+.+ .++++. ++||+ +++. ..+.. .|+..+++++++...+|+|+.|.|... ..+.+..
T Consensus 13 MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~~--~~~~~~~--- 87 (266)
T TIGR00036 13 MGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPEG--VLNHLKF--- 87 (266)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChHH--HHHHHHH---
Confidence 78999999886 477765 57854 3221 12211 246667888887557999999998443 4555432
Q ss_pred cccCCCCCCCeEEEEeCCCCHHHHHHHHHHHh
Q 022170 71 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~ 102 (301)
.++ .+..+|+-+++.+++..+++.+...
T Consensus 88 al~----~g~~vVigttg~~~e~~~~l~~aA~ 115 (266)
T TIGR00036 88 ALE----HGVRLVVGTTGFSEEDKQELADLAE 115 (266)
T ss_pred HHH----CCCCEEEECCCCCHHHHHHHHHHHh
Confidence 232 1235777777788888877776654
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.13 Score=45.83 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=42.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-------CCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adiVi~~vp 55 (301)
+|+.+++.|.++||+|.+..|++++...+...+++. ..++.++++++|+||-+++
T Consensus 12 iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 12 LGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred HHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 488999999999999999999987765554444322 2345677889999998865
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.24 Score=43.43 Aligned_cols=61 Identities=13% Similarity=0.200 Sum_probs=38.9
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|..|.+.|..|++++.. +.++.+.+++||+|+.+++.+.- +.. .++ .+|.
T Consensus 170 G~Pla~lL~~~gAtVtv~hs~--------------t~~l~~~~~~ADIvV~AvG~p~~-i~~------~~v-----k~Ga 223 (285)
T PRK14191 170 GKPLAMLMLNAGASVSVCHIL--------------TKDLSFYTQNADIVCVGVGKPDL-IKA------SMV-----KKGA 223 (285)
T ss_pred HHHHHHHHHHCCCEEEEEeCC--------------cHHHHHHHHhCCEEEEecCCCCc-CCH------HHc-----CCCc
Confidence 556666666666666655321 23456788999999999986542 221 123 3678
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||.+.
T Consensus 224 vVIDvGi 230 (285)
T PRK14191 224 VVVDIGI 230 (285)
T ss_pred EEEEeec
Confidence 9999875
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.33 Score=43.63 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=39.2
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|..|.++|..|+++.. .+.++.+.+++|||||.+++-+.- +.. .++ .+|.
T Consensus 227 GkPla~LL~~~~ATVTicHs--------------~T~nl~~~~~~ADIvIsAvGkp~~-v~~------d~v-----k~Ga 280 (345)
T PLN02897 227 GLPMSLLLQRHDATVSTVHA--------------FTKDPEQITRKADIVIAAAGIPNL-VRG------SWL-----KPGA 280 (345)
T ss_pred cHHHHHHHHHCCCEEEEEcC--------------CCCCHHHHHhhCCEEEEccCCcCc-cCH------HHc-----CCCC
Confidence 55555555555555554432 124678889999999999995542 222 233 3678
Q ss_pred EEEEeCCC
Q 022170 82 LLIDSSTI 89 (301)
Q Consensus 82 ivid~st~ 89 (301)
+|||.+..
T Consensus 281 vVIDVGin 288 (345)
T PLN02897 281 VVIDVGTT 288 (345)
T ss_pred EEEEcccc
Confidence 99998753
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.1 Score=48.97 Aligned_cols=58 Identities=26% Similarity=0.407 Sum_probs=44.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-CCCCC-------CCCHHHH-HhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT-------KETPFEV-AEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-~g~~~-------~~s~~e~-~~~adiVi~~vp~~~ 58 (301)
+|..++..|.+.|++|+++++++++.+.+.+ .+... ...+.++ +.++|.|+++++++.
T Consensus 11 ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 11 VGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred HHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 5889999999999999999999999988865 33221 1233444 678999999999764
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.29 Score=34.63 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=27.0
Q ss_pred CcHHHHHHHHhC-CCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~ 59 (301)
||.+++..|.+. +.+|++||| |++|.|++.+..
T Consensus 34 ~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~ 67 (86)
T cd05191 34 VGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVP 67 (86)
T ss_pred HHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCC
Confidence 477888888887 578889988 999999986543
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.37 Score=43.49 Aligned_cols=61 Identities=16% Similarity=0.283 Sum_probs=39.9
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|..|.++|..|+++.. .+.++.+.+++|||||.+++-+.- +.. .++ .+|.
T Consensus 244 GkPLa~LL~~~~ATVTicHs--------------~T~nl~~~~r~ADIVIsAvGkp~~-i~~------d~v-----K~GA 297 (364)
T PLN02616 244 GMPAALLLQREDATVSIVHS--------------RTKNPEEITREADIIISAVGQPNM-VRG------SWI-----KPGA 297 (364)
T ss_pred cHHHHHHHHHCCCeEEEeCC--------------CCCCHHHHHhhCCEEEEcCCCcCc-CCH------HHc-----CCCC
Confidence 55666666555555555532 134678889999999999995543 222 223 3678
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
+|||.+.
T Consensus 298 vVIDVGI 304 (364)
T PLN02616 298 VVIDVGI 304 (364)
T ss_pred EEEeccc
Confidence 9999875
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.62 Score=39.19 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=45.8
Q ss_pred cHHHHHHHHhCC---Ce-EEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 2 GFRMASNLMKAG---YK-MAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 2 G~~lA~~L~~~G---~~-V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
|..+.. |.+.| ++ |.+|||+.+++..+.+. +...+++++|.+...|+|+-|-. +++ +++...
T Consensus 12 G~~l~e-~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~A-v~e~~~ 78 (255)
T COG1712 12 GKFLLE-LVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEA-VREYVP 78 (255)
T ss_pred HHHHHH-HHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHH-HHHHhH
Confidence 444444 34444 54 77899999999877664 55566899999999999999987 555 777764
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.15 Score=43.27 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=43.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChh--hHHHHHhCCCCCC-------CCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTK-------ETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~--~~~~l~~~g~~~~-------~s~~e~~~~adiVi~~vp~ 56 (301)
.|.+++..|.+.||+|.+.-|++. ..+.+...|++.. +++.++++++|.||++++.
T Consensus 10 ~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 10 QGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp HHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred HHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 388999999999999999988864 4667777775421 3556678899999999984
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.27 Score=44.10 Aligned_cols=53 Identities=19% Similarity=0.125 Sum_probs=38.1
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHHh--------CC----CCCCCCHHHHHhcCCEEEEec
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVITML 54 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~adiVi~~v 54 (301)
||.++|..++..| .+|.++|+++++.+...- .+ +..+++++ ++++||+|+++.
T Consensus 16 vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 16 IGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 6889999999888 689999999876432111 01 12234555 779999999999
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.4 Score=42.10 Aligned_cols=40 Identities=15% Similarity=0.351 Sum_probs=28.7
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 89 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 89 (301)
.++++.+++||+||.+++-+.- +.. .++ .+|.++||.+..
T Consensus 192 ~~l~~~~~~ADIvV~AvG~p~~-i~~------~~i-----k~GavVIDvGin 231 (287)
T PRK14181 192 ENLTEILKTADIIIAAIGVPLF-IKE------EMI-----AEKAVIVDVGTS 231 (287)
T ss_pred CCHHHHHhhCCEEEEccCCcCc-cCH------HHc-----CCCCEEEEeccc
Confidence 4688889999999999995542 222 233 367899998753
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.16 Score=43.99 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=41.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHh-cCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~-~adiVi~~vp~ 56 (301)
+|++|...|.+.||+|++..|++.+.+.........-+.+++... .+|+||=--..
T Consensus 10 IG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~ 66 (297)
T COG1090 10 IGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGE 66 (297)
T ss_pred hhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCCC
Confidence 699999999999999999999998887665444433345555555 69998865443
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.26 Score=44.88 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=51.8
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeE
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQL 82 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~i 82 (301)
..++..|.+.|.+|.+||.....-......+.....++.+++++||+++++..|++ ++++-.... . .++++
T Consensus 333 ~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew~e--f~~~d~~~~-~------m~~~~ 403 (414)
T COG1004 333 LDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEWDE--FRDLDFEKL-L------MKTPV 403 (414)
T ss_pred HHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccHHH--HhccChhhh-h------ccCCE
Confidence 35788999999999999964332222221246888999999999999999999765 566533211 1 23467
Q ss_pred EEEe
Q 022170 83 LIDS 86 (301)
Q Consensus 83 vid~ 86 (301)
|+|-
T Consensus 404 v~Dg 407 (414)
T COG1004 404 VIDG 407 (414)
T ss_pred EEec
Confidence 7774
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.57 Score=41.38 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=28.2
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 89 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 89 (301)
.++++.+++||+||.++.-+.- +.. .++ .+|.++||.+..
T Consensus 200 ~~l~~~~~~ADIvVsAvGkp~~-i~~------~~i-----k~gavVIDvGin 239 (297)
T PRK14168 200 KNLARHCQRADILIVAAGVPNL-VKP------EWI-----KPGATVIDVGVN 239 (297)
T ss_pred cCHHHHHhhCCEEEEecCCcCc-cCH------HHc-----CCCCEEEecCCC
Confidence 4678889999999999985442 222 223 367899998753
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.099 Score=39.47 Aligned_cols=59 Identities=22% Similarity=0.442 Sum_probs=40.4
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
|.-+.++|.++||+|+..+...+.+ .|.....++.|.-...|++++++|. .. +.+++.+
T Consensus 16 g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~-~~-~~~~v~~ 74 (116)
T PF13380_consen 16 GYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPP-DK-VPEIVDE 74 (116)
T ss_dssp HHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-H-HH-HHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCH-HH-HHHHHHH
Confidence 5667889999999999888665443 3677888998844789999999994 44 6677654
|
|
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.23 Score=42.70 Aligned_cols=76 Identities=9% Similarity=0.005 Sum_probs=51.4
Q ss_pred CeEEEEcCChhhHHHHHhC----------CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEE
Q 022170 14 YKMAVHDVNCNVMKMFSDM----------GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLL 83 (301)
Q Consensus 14 ~~V~~~dr~~~~~~~l~~~----------g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~iv 83 (301)
.+|.+|+|+++.+..+++. -+..+.++++++..+|||+.|++. .+.++++. .+ .+| +.
T Consensus 165 reVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls----tePilfge--wl-----kpg-th 232 (333)
T KOG3007|consen 165 REVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS----TEPILFGE--WL-----KPG-TH 232 (333)
T ss_pred eEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc----CCceeeee--ee-----cCC-ce
Confidence 3799999999988887762 245577899999999999999995 34555432 22 234 66
Q ss_pred EEeCCCCHHHHHHHHHHH
Q 022170 84 IDSSTIDPQTSRNISAAV 101 (301)
Q Consensus 84 id~st~~p~~~~~~~~~~ 101 (301)
||.=+..-...++....+
T Consensus 233 IdlVGsf~p~mhEcDdel 250 (333)
T KOG3007|consen 233 IDLVGSFKPVMHECDDEL 250 (333)
T ss_pred EeeeccCCchHHHHhHHH
Confidence 766444444455555444
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.091 Score=39.89 Aligned_cols=80 Identities=20% Similarity=0.155 Sum_probs=46.9
Q ss_pred CcHHHHHHHHhCCC-e-EEEEcCChhhHHHHHhC--------CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCc
Q 022170 1 MGFRMASNLMKAGY-K-MAVHDVNCNVMKMFSDM--------GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~-V~~~dr~~~~~~~l~~~--------g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
+|..|.+.|.++-+ + +.++.++++.-..+... .....+...+.+.++|+||+|+|+.. .++....
T Consensus 11 vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~--~~~~~~~--- 85 (121)
T PF01118_consen 11 VGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA--SKELAPK--- 85 (121)
T ss_dssp HHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH--HHHHHHH---
T ss_pred HHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH--HHHHHHH---
Confidence 47889888888542 4 45567666332233222 12222223445689999999999654 4555432
Q ss_pred cccCCCCCCCeEEEEeCCCC
Q 022170 71 LLQGGNSVRPQLLIDSSTID 90 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~ 90 (301)
++ .+|..|||.|+..
T Consensus 86 ~~-----~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 86 LL-----KAGIKVIDLSGDF 100 (121)
T ss_dssp HH-----HTTSEEEESSSTT
T ss_pred Hh-----hCCcEEEeCCHHH
Confidence 22 2567999999754
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.62 Score=41.02 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=28.8
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 89 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 89 (301)
.++.+.+++||+||++++-+.- +.. .++ .+|.+|||++..
T Consensus 196 ~nl~~~~~~ADIvIsAvGkp~~-i~~------~~v-----k~gavVIDvGin 235 (293)
T PRK14185 196 KNLKKECLEADIIIAALGQPEF-VKA------DMV-----KEGAVVIDVGTT 235 (293)
T ss_pred CCHHHHHhhCCEEEEccCCcCc-cCH------HHc-----CCCCEEEEecCc
Confidence 4678889999999999996543 222 233 367899998863
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.5 Score=41.60 Aligned_cols=61 Identities=13% Similarity=0.247 Sum_probs=42.2
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.+++..|.+.|..|++++|. +.++.+.++++|+||.+++.+.- +.. ..+ .++.
T Consensus 172 Gkpia~~L~~~gatVtv~~~~--------------t~~L~~~~~~aDIvI~AtG~~~~-v~~------~~l-----k~ga 225 (283)
T PRK14192 172 GKPMAMMLLNANATVTICHSR--------------TQNLPELVKQADIIVGAVGKPEL-IKK------DWI-----KQGA 225 (283)
T ss_pred HHHHHHHHHhCCCEEEEEeCC--------------chhHHHHhccCCEEEEccCCCCc-CCH------HHc-----CCCC
Confidence 778888888888888888862 23456666899999999974331 211 122 3567
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
+++|+..
T Consensus 226 vViDvg~ 232 (283)
T PRK14192 226 VVVDAGF 232 (283)
T ss_pred EEEEEEE
Confidence 9999864
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.55 Score=41.21 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=27.7
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 88 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 88 (301)
.++.+.+++||+||.+++.+.- +.. .++ .+|.++||.+.
T Consensus 196 ~~l~~~~~~ADIVI~AvG~p~l-i~~------~~v-----k~GavVIDVGi 234 (286)
T PRK14184 196 PDLAEECREADFLFVAIGRPRF-VTA------DMV-----KPGAVVVDVGI 234 (286)
T ss_pred hhHHHHHHhCCEEEEecCCCCc-CCH------HHc-----CCCCEEEEeee
Confidence 3678889999999999985543 222 223 35789999874
|
|
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.00 E-value=4.2 Score=34.14 Aligned_cols=64 Identities=19% Similarity=0.296 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHh
Q 022170 33 GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 33 g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~ 102 (301)
|+.++++.+|+++++|+|+.=+|-... -.+++.. ++.. -++|.++-+..|+.-..-.++-+.+.
T Consensus 126 g~~vttddreavedad~iitwlpkg~~-qpdiikk---fidd--ipegaivthactipttkf~kifed~g 189 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGV-QPDIIKK---FIDD--IPEGAIVTHACTIPTTKFKKIFEDMG 189 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCC-CccHHHH---HHhc--CCCCceEeeecccchHHHHHHHHHhC
Confidence 567788889999999999999996543 2333322 2221 24678999988887665555555443
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.7 Score=40.82 Aligned_cols=91 Identities=15% Similarity=0.152 Sum_probs=59.4
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHHhc--CCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~--adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
|..+..+|.+.||+ .+|-.||.+ .+.+ .|.+...|+.++-+. .|++++++|.+. +.+++.+ ..+. .
T Consensus 21 g~~~l~~l~~~g~~-~v~pVnp~~~~~~v--~G~~~y~sv~dlp~~~~~DlAvi~vp~~~--v~~~l~e---~~~~---g 89 (291)
T PRK05678 21 GTFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFNTVAEAVEATGANASVIYVPPPF--AADAILE---AIDA---G 89 (291)
T ss_pred HHHHHHHHHHCCCC-EEEEECCCCCCCeE--eCeeccCCHHHHhhccCCCEEEEEcCHHH--HHHHHHH---HHHC---C
Confidence 56777888888997 555455542 2222 378888999999886 899999999543 5666543 2221 1
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 79 RPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
-+..+|-+++...+..+++.+...+
T Consensus 90 vk~avI~s~Gf~~~~~~~l~~~a~~ 114 (291)
T PRK05678 90 IDLIVCITEGIPVLDMLEVKAYLER 114 (291)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Confidence 1246777777765545566666554
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.89 Score=38.62 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=49.4
Q ss_pred CcHHHHHHHHhCCC---eEEEEcCC----hhhH-------HHHHhC-CC-CCCCCHHHHHhcCCEEEEecCCCccchhhh
Q 022170 1 MGFRMASNLMKAGY---KMAVHDVN----CNVM-------KMFSDM-GV-PTKETPFEVAEASDVVITMLPSSSHQVLDV 64 (301)
Q Consensus 1 mG~~lA~~L~~~G~---~V~~~dr~----~~~~-------~~l~~~-g~-~~~~s~~e~~~~adiVi~~vp~~~~~~~~v 64 (301)
+|.++|..|.+.|. +|+++||+ .++. ..+.+. +. ....++.++++++|+||-++|.... .++.
T Consensus 36 Ag~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIgaT~~G~~-~~~~ 114 (226)
T cd05311 36 AGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVSRPGVV-KKEM 114 (226)
T ss_pred HHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeCCCCCCC-CHHH
Confidence 47889999999996 59999998 4443 223222 11 1113677888899999999983322 2233
Q ss_pred hcCCCccccCCCCCCCeEEEEeCCCC
Q 022170 65 YNGPNGLLQGGNSVRPQLLIDSSTID 90 (301)
Q Consensus 65 ~~~~~~~l~~~~~~~~~ivid~st~~ 90 (301)
+.. + .+..++.+.++-.
T Consensus 115 l~~----m-----~~~~ivf~lsnP~ 131 (226)
T cd05311 115 IKK----M-----AKDPIVFALANPV 131 (226)
T ss_pred HHh----h-----CCCCEEEEeCCCC
Confidence 321 1 1345777888443
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.31 Score=44.24 Aligned_cols=80 Identities=23% Similarity=0.194 Sum_probs=47.7
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhHHHHHh-C----C---CCCC-CCHHHHHhcCCEEEEecCCCccchhhhhcCCC
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-M----G---VPTK-ETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 69 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~-~----g---~~~~-~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~ 69 (301)
+|..+.+.|.++ ++++. +++++++.-+.+.. . + .... .+.++...++|+||+|+|+.. .+++...
T Consensus 12 vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~--s~~~~~~-- 87 (346)
T TIGR01850 12 TGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV--SAELAPE-- 87 (346)
T ss_pred HHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH--HHHHHHH--
Confidence 477888888876 56777 55644422222221 1 1 1111 145566568999999999765 4555432
Q ss_pred ccccCCCCCCCeEEEEeCCCC
Q 022170 70 GLLQGGNSVRPQLLIDSSTID 90 (301)
Q Consensus 70 ~~l~~~~~~~~~ivid~st~~ 90 (301)
+. ..|+.|||.|+..
T Consensus 88 -~~-----~~G~~VIDlS~~f 102 (346)
T TIGR01850 88 -LL-----AAGVKVIDLSADF 102 (346)
T ss_pred -HH-----hCCCEEEeCChhh
Confidence 22 2467999999753
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.85 Score=39.77 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=41.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
.|.+|+.-|...++.|++++.. +.++.+.+++||+|+.++.-+.- ++ ..++ .+|
T Consensus 168 VGkPla~lL~~~naTVtvcHs~--------------T~~l~~~~k~ADIvv~AvG~p~~-i~------~d~v-----k~g 221 (283)
T COG0190 168 VGKPLALLLLNANATVTVCHSR--------------TKDLASITKNADIVVVAVGKPHF-IK------ADMV-----KPG 221 (283)
T ss_pred CcHHHHHHHHhCCCEEEEEcCC--------------CCCHHHHhhhCCEEEEecCCccc-cc------cccc-----cCC
Confidence 3666666666666666666532 24677788999999999985443 32 1233 356
Q ss_pred eEEEEeCCC
Q 022170 81 QLLIDSSTI 89 (301)
Q Consensus 81 ~ivid~st~ 89 (301)
.++||....
T Consensus 222 avVIDVGin 230 (283)
T COG0190 222 AVVIDVGIN 230 (283)
T ss_pred CEEEecCCc
Confidence 899998753
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.27 Score=45.26 Aligned_cols=57 Identities=26% Similarity=0.350 Sum_probs=42.6
Q ss_pred CcHHHHHHHHhCC-C-eEEEEcCChhhHHHHHhC--C-------CCC--CCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAG-Y-KMAVHDVNCNVMKMFSDM--G-------VPT--KETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G-~-~V~~~dr~~~~~~~l~~~--g-------~~~--~~s~~e~~~~adiVi~~vp~~ 57 (301)
||+.+++.|++.+ + +|++.||+.++++++.+. + +.+ ..++.+.++++|+||.|+|..
T Consensus 9 vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 9 VGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp HHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred HHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 5899999999887 4 899999999999888752 1 111 123567788999999999854
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.35 Score=42.71 Aligned_cols=57 Identities=7% Similarity=0.037 Sum_probs=37.7
Q ss_pred CcHHHHHHHHhCCCe-EEEEcCCh---hhHHHHHhC----C--CCC--C--C---CHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYK-MAVHDVNC---NVMKMFSDM----G--VPT--K--E---TPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~-V~~~dr~~---~~~~~l~~~----g--~~~--~--~---s~~e~~~~adiVi~~vp~~ 57 (301)
.|.+++..|++.|.+ |++++|++ ++.+++.+. + ... . + +..+.++.+|+||-|+|-.
T Consensus 137 agrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~G 210 (289)
T PRK12548 137 AATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNATLVG 210 (289)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeCCCC
Confidence 367888999999986 99999997 566554431 1 111 1 1 2233456789999998843
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.97 Score=43.11 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=39.6
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC-CC--------------------------HHHHHhcCCEEEEec
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-ET--------------------------PFEVAEASDVVITML 54 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s--------------------------~~e~~~~adiVi~~v 54 (301)
|...+..+...|..|+++|+++++.+.+...|.... -+ ..+.++++|+||.|+
T Consensus 176 Gl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~Ta 255 (511)
T TIGR00561 176 GLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTA 255 (511)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 556667777789899999999999888877765430 01 334567899999999
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.3 Score=39.76 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=41.5
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----CCCCCCCHHHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
|+.++.-..+.||+|+.+-||++++...... .+---+++.+.+.+-|+||.+....
T Consensus 13 Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 13 GSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred HHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 7788888999999999999999998664211 1212234557788899999988644
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.42 Score=42.46 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=41.9
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhHHHHHhC--------C-CCC--CCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM--------G-VPT--KETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~--------g-~~~--~~s~~e~~~~adiVi~~vp~~~ 58 (301)
+|.++|..|+..| ++++++|+++++++..+.. . .+. .++ .+.+++||+||++...+.
T Consensus 9 VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~ 78 (300)
T cd00300 9 VGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPR 78 (300)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCC
Confidence 4889999999988 6899999999877554432 0 111 233 467899999999998653
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.4 Score=42.80 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=40.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHH---HHhC------------CCCCCCCHHHHHhcCCEEEEec
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKM---FSDM------------GVPTKETPFEVAEASDVVITML 54 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~---l~~~------------g~~~~~s~~e~~~~adiVi~~v 54 (301)
+|+.+...|+++||.|.+--|+++.-+. +.+. .+....+..+++++||.||=+-
T Consensus 18 Igswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~A 86 (327)
T KOG1502|consen 18 IGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHTA 86 (327)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEeC
Confidence 4789999999999999999888886322 3222 1334468889999999999643
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.1 Score=39.48 Aligned_cols=91 Identities=12% Similarity=0.150 Sum_probs=59.9
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHHhc--CCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~--adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
|..+-.++...|++ .+|..||.+ .+.+ .|.+...|+.|+-+. .|++++++|.+. +.+++.+ .... .
T Consensus 19 ~~~~~~~~~~~g~~-~v~~V~p~~~~~~v--~G~~~y~sv~dlp~~~~~Dlavi~vpa~~--v~~~l~e---~~~~---G 87 (286)
T TIGR01019 19 GSFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFDSVKEAVEETGANASVIFVPAPF--AADAIFE---AIDA---G 87 (286)
T ss_pred HHHHHHHHHhCCCC-EEEEECCCCCccee--cCeeccCCHHHHhhccCCCEEEEecCHHH--HHHHHHH---HHHC---C
Confidence 56677788888998 777777763 2222 478889999998876 799999999543 5666643 2221 1
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 79 RPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
-+..+|-+++......+++.+..++
T Consensus 88 vk~avIis~Gf~e~~~~~l~~~a~~ 112 (286)
T TIGR01019 88 IELIVCITEGIPVHDMLKVKRYMEE 112 (286)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Confidence 1246666677655544566665544
|
ATP citrate lyases appear to form an outgroup. |
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.96 Score=39.97 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=27.4
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 88 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 88 (301)
.++++.+++||+||.+++-+.- +.. .++ .+|.++||.+.
T Consensus 198 ~~l~~~~~~ADIvI~Avg~~~l-i~~------~~v-----k~GavVIDVgi 236 (295)
T PRK14174 198 KDIPSYTRQADILIAAIGKARF-ITA------DMV-----KPGAVVIDVGI 236 (295)
T ss_pred hhHHHHHHhCCEEEEecCccCc-cCH------HHc-----CCCCEEEEeec
Confidence 3578889999999999985432 221 233 36789999874
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.67 E-value=1.1 Score=39.56 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=28.3
Q ss_pred CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCC
Q 022170 38 ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 89 (301)
Q Consensus 38 ~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 89 (301)
.++++.+++||+||.++.-+.- +.. .++ .+|.++||.+..
T Consensus 196 ~~l~~~~~~ADIvIsAvGkp~~-i~~------~~i-----k~gaiVIDvGin 235 (297)
T PRK14167 196 DDLAAKTRRADIVVAAAGVPEL-IDG------SML-----SEGATVIDVGIN 235 (297)
T ss_pred CCHHHHHhhCCEEEEccCCcCc-cCH------HHc-----CCCCEEEEcccc
Confidence 4678889999999999985442 222 123 367899998753
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.57 E-value=1.4 Score=38.18 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=60.3
Q ss_pred CcHHHHHHHHhCC---CeE-EEEcCChhhHHHHHhCCCCCCCCHHHH-HhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAG---YKM-AVHDVNCNVMKMFSDMGVPTKETPFEV-AEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G---~~V-~~~dr~~~~~~~l~~~g~~~~~s~~e~-~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||..++..|.+.+ +++ .+|+|++++.+.+... ..+++++++. ...+|+|+-|-+ +.+ +++.... +++
T Consensus 13 IG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~-~~a-v~e~~~~---iL~-- 84 (267)
T PRK13301 13 IASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAG-QQA-IAEHAEG---CLT-- 84 (267)
T ss_pred HHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCC-HHH-HHHHHHH---HHh--
Confidence 5777788776532 453 4689999888888765 7788899996 688999999988 455 7777643 553
Q ss_pred CCCCCeEEEEeCC---CCHHHHHHHHHHHh
Q 022170 76 NSVRPQLLIDSST---IDPQTSRNISAAVS 102 (301)
Q Consensus 76 ~~~~~~ivid~st---~~p~~~~~~~~~~~ 102 (301)
.|+-++-+|. .++..-+++.+...
T Consensus 85 ---~g~dlvv~SvGALaD~~~~~~l~~~A~ 111 (267)
T PRK13301 85 ---AGLDMIICSAGALADDALRARLIAAAE 111 (267)
T ss_pred ---cCCCEEEEChhHhcCHHHHHHHHHHHH
Confidence 2333443443 24455555555544
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.49 E-value=1.5 Score=36.53 Aligned_cols=58 Identities=17% Similarity=0.096 Sum_probs=38.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChh-hHHHHHhCC-CCCCC-CH-HHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMG-VPTKE-TP-FEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g-~~~~~-s~-~e~~~~adiVi~~vp~~~ 58 (301)
||...++.|.+.|++|++++++.. .+..+...+ +.... .. .+.+.++|+||.|+.++.
T Consensus 21 va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 21 VAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence 456778889999999999987643 334554443 22111 11 234678999999998764
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.46 Score=38.26 Aligned_cols=81 Identities=16% Similarity=0.131 Sum_probs=49.6
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCC--------------------------CHHHHHhcCCEEEEecC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE--------------------------TPFEVAEASDVVITMLP 55 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~--------------------------s~~e~~~~adiVi~~vp 55 (301)
|..-+..|...|++|+++|.++++.+.+...+..... .+.+.++.+|+||.+.-
T Consensus 32 g~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~d~vI~~~~ 111 (168)
T PF01262_consen 32 GQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFIAPADIVIGNGL 111 (168)
T ss_dssp HHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHHHH-SEEEEHHH
T ss_pred HHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHHhhCcEEeeecc
Confidence 5566777888999999999999988877766432211 23456778999997443
Q ss_pred -CCccchhhhhcCCCccccCCCCCCCeEEEEeC
Q 022170 56 -SSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSS 87 (301)
Q Consensus 56 -~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s 87 (301)
+... ...++.. ..++. ..++.+|+|.|
T Consensus 112 ~~~~~-~P~lvt~--~~~~~--m~~gsvIvDis 139 (168)
T PF01262_consen 112 YWGKR-APRLVTE--EMVKS--MKPGSVIVDIS 139 (168)
T ss_dssp BTTSS----SBEH--HHHHT--SSTTEEEEETT
T ss_pred cCCCC-CCEEEEh--HHhhc--cCCCceEEEEE
Confidence 2322 3333322 12332 34788999987
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.48 Score=42.02 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=39.5
Q ss_pred HHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCC
Q 022170 4 RMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 4 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
-++..|.+.||+|.++.-+.+. ....|+...++.+++++++|+|+..+|.
T Consensus 16 ~~~~~l~~~G~~v~~~g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~ 65 (296)
T PRK08306 16 ELIRKLVELGAKVSLVGFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPG 65 (296)
T ss_pred HHHHHHHHCCCEEEEEeccccc---cccCCceeeccHHHHhccCCEEEECCcc
Confidence 4788999999999987654321 2234888888889999999999999885
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=89.64 E-value=0.48 Score=44.53 Aligned_cols=58 Identities=16% Similarity=0.262 Sum_probs=42.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--CCCC-C---CCHH---H-HHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--GVPT-K---ETPF---E-VAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--g~~~-~---~s~~---e-~~~~adiVi~~vp~~~ 58 (301)
+|..+++.|.+.|++|++.|+++++.+.+.+. +... . .+.+ + .++++|.|+++.+++.
T Consensus 242 ~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~ 309 (453)
T PRK09496 242 IGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDE 309 (453)
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcH
Confidence 37889999999999999999999999888764 2221 1 1222 2 1357899988888654
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.55 E-value=0.43 Score=41.46 Aligned_cols=32 Identities=16% Similarity=0.376 Sum_probs=29.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|..+|+.|+++||+|++..|+.++.+++.++
T Consensus 18 IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~ 49 (265)
T COG0300 18 IGAELAKQLARRGYNLILVARREDKLEALAKE 49 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHH
Confidence 58899999999999999999999999888754
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=89.54 E-value=0.55 Score=45.33 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=26.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.||+|.+++|+.++.+.+.
T Consensus 92 IG~aLAr~LLk~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 92 VGSRTVRELLKLGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 588999999999999999999998876554
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.51 Score=42.78 Aligned_cols=79 Identities=23% Similarity=0.208 Sum_probs=45.4
Q ss_pred CcHHHHHHHHhC-CCeEEE-EcCChhhHHHHHhC-----CC--CCCCCHHH-HHhcCCEEEEecCCCccchhhhhcCCCc
Q 022170 1 MGFRMASNLMKA-GYKMAV-HDVNCNVMKMFSDM-----GV--PTKETPFE-VAEASDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~~-~dr~~~~~~~l~~~-----g~--~~~~s~~e-~~~~adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
+|..+++.|.++ ++++.. .+|+ +..+.+.+. +. ....+..+ ...++|+||+|+|+.. ..++...
T Consensus 14 vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~--~~~~v~~--- 87 (343)
T PRK00436 14 TGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV--SMDLAPQ--- 87 (343)
T ss_pred HHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH--HHHHHHH---
Confidence 477788888876 567654 5543 222222211 11 01222222 4568999999999765 4555432
Q ss_pred cccCCCCCCCeEEEEeCCCC
Q 022170 71 LLQGGNSVRPQLLIDSSTID 90 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~ 90 (301)
++ ..|+.|||.|+-.
T Consensus 88 a~-----~aG~~VID~S~~f 102 (343)
T PRK00436 88 LL-----EAGVKVIDLSADF 102 (343)
T ss_pred HH-----hCCCEEEECCccc
Confidence 22 2468999999754
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.37 E-value=0.8 Score=39.70 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=27.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++++.|++.||+|++.+|++++.+.+.+
T Consensus 15 iG~~la~~l~~~G~~V~~~~r~~~~l~~~~~ 45 (273)
T PRK06182 15 IGKATARRLAAQGYTVYGAARRVDKMEDLAS 45 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 5899999999999999999999988766644
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.94 E-value=0.58 Score=41.13 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=51.1
Q ss_pred cHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC----CCC-CCCCHHHH--HhcCCEEEEecCCCccchhh---hhcCCCc
Q 022170 2 GFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM----GVP-TKETPFEV--AEASDVVITMLPSSSHQVLD---VYNGPNG 70 (301)
Q Consensus 2 G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~----g~~-~~~s~~e~--~~~adiVi~~vp~~~~~~~~---v~~~~~~ 70 (301)
+.+++..|++.| .+|+++||+.++.+++.+. +.. ......+. ...+|+||=|+|-.-. -.. .+. ..
T Consensus 138 arAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~-~~~~~~~~~--~~ 214 (283)
T COG0169 138 ARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMA-GPEGDSPVP--AE 214 (283)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCC-CCCCCCCCc--HH
Confidence 578889999999 5799999999999888764 211 11122211 2258999999996543 221 111 11
Q ss_pred cccCCCCCCCeEEEEeCCCCH
Q 022170 71 LLQGGNSVRPQLLIDSSTIDP 91 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~p 91 (301)
++ .+..++.|+=-...
T Consensus 215 ~l-----~~~~~v~D~vY~P~ 230 (283)
T COG0169 215 LL-----PKGAIVYDVVYNPL 230 (283)
T ss_pred hc-----CcCCEEEEeccCCC
Confidence 22 35578888865443
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.68 E-value=4.8 Score=36.14 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=56.9
Q ss_pred CCCeEE-EEcCChhhHHHHHhC-C---CCCCCCHHHHHhcC--CEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEE
Q 022170 12 AGYKMA-VHDVNCNVMKMFSDM-G---VPTKETPFEVAEAS--DVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI 84 (301)
Q Consensus 12 ~G~~V~-~~dr~~~~~~~l~~~-g---~~~~~s~~e~~~~a--diVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivi 84 (301)
.+|+|+ +++|+.+++..+++. + .++.+|.+|++++. |+|.+..|+++. .+++- .++. .++.+++
T Consensus 31 s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH--~evv~---l~l~----~~K~VL~ 101 (351)
T KOG2741|consen 31 SNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQH--YEVVM---LALN----KGKHVLC 101 (351)
T ss_pred cCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccH--HHHHH---HHHH----cCCcEEe
Confidence 467765 679999999888775 3 46778999999865 999999998875 34431 1222 1223555
Q ss_pred Ee-CCCCHHHHHHHHHHHhh
Q 022170 85 DS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 85 d~-st~~p~~~~~~~~~~~~ 103 (301)
+- -.......+++.+..+.
T Consensus 102 EKPla~n~~e~~~iveaA~~ 121 (351)
T KOG2741|consen 102 EKPLAMNVAEAEEIVEAAEA 121 (351)
T ss_pred cccccCCHHHHHHHHHHHHH
Confidence 44 24567778888887765
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.62 E-value=0.62 Score=41.82 Aligned_cols=54 Identities=24% Similarity=0.242 Sum_probs=38.4
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHH--HH---Hh---CC----CCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMK--MF---SD---MG----VPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~--~l---~~---~g----~~~~~s~~e~~~~adiVi~~vp 55 (301)
||.++|..++..|+ +|.++|+++++.. .+ .. .+ +..+++. +++++||+||++..
T Consensus 17 vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~tag 83 (321)
T PTZ00082 17 IGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTAG 83 (321)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECCC
Confidence 68999999999996 8999999998542 11 11 11 2223455 57799999999774
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=88.60 E-value=0.53 Score=41.04 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=37.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC--CCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT--KETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~--~~s~~e~~~~adiVi~~vp 55 (301)
+|+.+++.|.+.||+|++.+|++.+.+.+...+... .....+.+.++|+||-|..
T Consensus 10 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 10 IGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred hhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 489999999999999999999887654332111111 1234455667888887775
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=88.50 E-value=0.56 Score=35.58 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=28.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 35 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~ 35 (301)
+|...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~ 36 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD 36 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc
Confidence 36666777777899999999999999988887743
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.43 E-value=0.92 Score=40.97 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=52.0
Q ss_pred CcHHHHHHHHhC-C-CeEEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~-G-~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||+.+++.|.++ | .+|++++|++++...+.+. +-....++.+++.++|+|+.+...+. .+....+ .+
T Consensus 167 IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~----~~~I~~~-~l----- 236 (340)
T PRK14982 167 IGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPK----GVEIDPE-TL----- 236 (340)
T ss_pred HHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCc----CCcCCHH-Hh-----
Confidence 688999999854 5 6899999999888877654 11122367788899999998876432 2111111 11
Q ss_pred CCCeEEEEeC
Q 022170 78 VRPQLLIDSS 87 (301)
Q Consensus 78 ~~~~ivid~s 87 (301)
.++.+++|.+
T Consensus 237 ~~~~~viDiA 246 (340)
T PRK14982 237 KKPCLMIDGG 246 (340)
T ss_pred CCCeEEEEec
Confidence 3567899976
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.36 E-value=1.5 Score=39.50 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=40.3
Q ss_pred HHHHHHh-CCCeEEEEcCChhhHHHHHhCCCCCCC-----CHHHHH-hcCCEEEEecCCCccchhhhh
Q 022170 5 MASNLMK-AGYKMAVHDVNCNVMKMFSDMGVPTKE-----TPFEVA-EASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 5 lA~~L~~-~G~~V~~~dr~~~~~~~l~~~g~~~~~-----s~~e~~-~~adiVi~~vp~~~~~~~~v~ 65 (301)
||.-+++ .|.+|+.+||+++|.+.+.+.|+...- +..+.+ +.+|+|+.+++ +.. +.+.+
T Consensus 181 ~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~-~~~~l 246 (339)
T COG1064 181 MAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PAT-LEPSL 246 (339)
T ss_pred HHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhh-HHHHH
Confidence 4555665 799999999999999988888754321 122222 23888888888 655 55544
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=88.35 E-value=1.5 Score=45.52 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=56.5
Q ss_pred CcHHHHHHHHhCC-Ce-------------EEEEcCChhhHHHHHhC--CC---CC-CCCHHHHH---hcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAG-YK-------------MAVHDVNCNVMKMFSDM--GV---PT-KETPFEVA---EASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~-------------V~~~dr~~~~~~~l~~~--g~---~~-~~s~~e~~---~~adiVi~~vp~~ 57 (301)
||...+..|++.. ++ |++.|++++.++.+.+. ++ .. +.+.+++. +++|+|++|+|..
T Consensus 580 VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~~ 659 (1042)
T PLN02819 580 VCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQVDVVISLLPAS 659 (1042)
T ss_pred HHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcCCCEEEECCCch
Confidence 6888999998753 33 88999999998887653 31 22 34555543 6799999999975
Q ss_pred ccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 58 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 58 ~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.. ..++.. .++ .|+-+++.| .....++++.+...+
T Consensus 660 ~H--~~VAka---Aie-----aGkHvv~ek-y~~~e~~~L~e~Ak~ 694 (1042)
T PLN02819 660 CH--AVVAKA---CIE-----LKKHLVTAS-YVSEEMSALDSKAKE 694 (1042)
T ss_pred hh--HHHHHH---HHH-----cCCCEEECc-CCHHHHHHHHHHHHH
Confidence 42 333321 121 234556555 333445555555543
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.13 E-value=0.6 Score=41.12 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=29.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|.+.|.-|+++|++|.+..|+++|.++.+++
T Consensus 61 IGKayA~eLAkrG~nvvLIsRt~~KL~~v~kE 92 (312)
T KOG1014|consen 61 IGKAYARELAKRGFNVVLISRTQEKLEAVAKE 92 (312)
T ss_pred chHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 58999999999999999999999999888764
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=87.75 E-value=0.63 Score=41.32 Aligned_cols=55 Identities=9% Similarity=0.106 Sum_probs=38.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-------CCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adiVi~~vp 55 (301)
+|..++..|++.||+|++.+|+++....+...++.. ..++.++++.+|+||-+..
T Consensus 12 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 12 VGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred hhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 589999999999999999999877654443223221 1234556677888887764
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=87.64 E-value=0.87 Score=42.46 Aligned_cols=57 Identities=18% Similarity=0.105 Sum_probs=37.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.++|+.|.+.|++|+++|++++.........-...........++|+||.+.+.+
T Consensus 14 ~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 14 TGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence 578899999999999999998876443211000011223334446789999887644
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=87.58 E-value=0.68 Score=40.44 Aligned_cols=56 Identities=16% Similarity=0.018 Sum_probs=38.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC----CCCCCCHHHHH------hc-CCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG----VPTKETPFEVA------EA-SDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g----~~~~~s~~e~~------~~-adiVi~~vp~ 56 (301)
+|+.++..|.+.||+|.+..|++++.....-.. ..-.+++.+++ .. +|.|+.+.|.
T Consensus 11 iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 11 TASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 488999999999999999999987653211011 11123455555 45 8999988874
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=87.26 E-value=1.5 Score=41.45 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=37.2
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEE
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 52 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~ 52 (301)
|.+.|..|.+.|++|+++|+.+.....+.+.|+.......+.+.++|+||.
T Consensus 21 G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~ 71 (460)
T PRK01390 21 GLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVL 71 (460)
T ss_pred HHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEE
Confidence 667789999999999999987665555666677654322334567898886
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=87.26 E-value=1.8 Score=40.98 Aligned_cols=83 Identities=8% Similarity=0.121 Sum_probs=52.5
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHH--HHh--------------------CCCCCCCCHHHHHhcCCEEEEecCCCccc
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNVMKM--FSD--------------------MGVPTKETPFEVAEASDVVITMLPSSSHQ 60 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~~~~--l~~--------------------~g~~~~~s~~e~~~~adiVi~~vp~~~~~ 60 (301)
..++..|.+.|.+|.+||---+..+. ... .++..+.++.++++++|+|++++.++.
T Consensus 347 ~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~e-- 424 (473)
T PLN02353 347 IDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVWDAYEATKGAHGICILTEWDE-- 424 (473)
T ss_pred HHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeCCHHHHhcCCCEEEECCCChH--
Confidence 46888999999999999965322111 110 023556677889999999999999765
Q ss_pred hhhhhcCCCccccCCCCCCCeEEEEeCCCCH
Q 022170 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 91 (301)
Q Consensus 61 ~~~v~~~~~~~l~~~~~~~~~ivid~st~~p 91 (301)
.+..- ...+.+. ..+.++|+|+.++..
T Consensus 425 f~~l~--~~~~~~~--m~~~~~viD~rn~l~ 451 (473)
T PLN02353 425 FKTLD--YQKIYDN--MQKPAFVFDGRNVLD 451 (473)
T ss_pred hcccC--HHHHHHh--ccCCCEEEECCCCCC
Confidence 44431 0111111 112348999988764
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=87.22 E-value=1.7 Score=41.46 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=27.5
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 35 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~ 35 (301)
|..-+..+...|.+|+++|+++++.+...+.|++
T Consensus 177 GL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~ 210 (509)
T PRK09424 177 GLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE 210 (509)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence 4455555667799999999999999998888876
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=86.96 E-value=0.92 Score=41.74 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=47.0
Q ss_pred cHHHHHHHHhC-CCeEEEEcCChhhHHHHHhCC-------CCCCCCHH-HHHhcCCEEEEecCCCccchhhhhcCCCccc
Q 022170 2 GFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMG-------VPTKETPF-EVAEASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 2 G~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~-e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
|..|.+.|.++ .++|+.+.++++.-+.+.... .....+.+ +.++++|+||+|+|+.. ..++... +
T Consensus 51 G~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~--s~~i~~~----~ 124 (381)
T PLN02968 51 GAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGT--TQEIIKA----L 124 (381)
T ss_pred HHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHH--HHHHHHH----H
Confidence 67788888887 678888766544332222111 11112222 22578999999999754 4565532 2
Q ss_pred cCCCCCCCeEEEEeCCCC
Q 022170 73 QGGNSVRPQLLIDSSTID 90 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~ 90 (301)
+ .+..|||.|+..
T Consensus 125 ~-----~g~~VIDlSs~f 137 (381)
T PLN02968 125 P-----KDLKIVDLSADF 137 (381)
T ss_pred h-----CCCEEEEcCchh
Confidence 1 357899999753
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=86.77 E-value=1.3 Score=41.74 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=37.3
Q ss_pred cHHHHHHHHhCCCeEEEEcCChh-----hHHHHHhCCCCCC--CCHHHHHhcCCEEEEe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTK--ETPFEVAEASDVVITM 53 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~--~s~~e~~~~adiVi~~ 53 (301)
|.++|+.|.+.|++|+++|+++. ..+.+.+.|+... ....+.+.++|+||.+
T Consensus 26 G~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S 84 (458)
T PRK01710 26 NIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT 84 (458)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC
Confidence 67889999999999999998753 2245666676553 2223545789999887
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=86.69 E-value=1.3 Score=38.69 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=37.7
Q ss_pred cHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 2 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
+++++..|.+.|. +|+++||++++.+.+.+. +......+ ....+|+||-|+|-
T Consensus 134 arAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~ 188 (272)
T PRK12550 134 AKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPI 188 (272)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCcc
Confidence 5678888998886 599999999999888764 22111111 12458999999984
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=86.61 E-value=3.9 Score=38.57 Aligned_cols=60 Identities=22% Similarity=0.482 Sum_probs=44.3
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
+|.-+.++|.+.|| +|+..|...+. + .|..+..+++++-...|++++++|... +.+++.+
T Consensus 22 ~g~~~~~~l~~~gf~g~v~~Vnp~~~~---i--~G~~~~~sl~~lp~~~Dlavi~vp~~~--~~~~l~e 83 (447)
T TIGR02717 22 VGYAIMKNLIEGGYKGKIYPVNPKAGE---I--LGVKAYPSVLEIPDPVDLAVIVVPAKY--VPQVVEE 83 (447)
T ss_pred hHHHHHHHHHhCCCCCcEEEECCCCCc---c--CCccccCCHHHCCCCCCEEEEecCHHH--HHHHHHH
Confidence 46778899999998 46555554332 2 478888899998788999999999543 6666654
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.33 E-value=1.5 Score=38.71 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=39.4
Q ss_pred cHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-----CC---CCCC--CHHHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----GV---PTKE--TPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-----g~---~~~~--s~~e~~~~adiVi~~vp~~ 57 (301)
|++++..|++.|. +|+++||++++.+.+.+. +. ...+ +..+....+|+||=|+|-.
T Consensus 139 arAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~G 205 (283)
T PRK14027 139 GNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMG 205 (283)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCC
Confidence 5788888999886 799999999999888653 11 1111 1233456789999998843
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.27 E-value=1.1 Score=39.11 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=27.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|..+|+.|++.|++|++.+|++++.+.+.+.
T Consensus 16 iG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~ 47 (277)
T PRK05993 16 IGAYCARALQSDGWRVFATCRKEEDVAALEAE 47 (277)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Confidence 58899999999999999999999888777654
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=86.09 E-value=1.8 Score=36.02 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.4
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVN 22 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~ 22 (301)
||+.+|..|++.|+ +++++|.+
T Consensus 32 lGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 32 LGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHHHHHHHHHcCCCEEEEECCC
Confidence 68999999999998 69999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.08 E-value=2.8 Score=36.53 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=53.8
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCC--hhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVN--CNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~--~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||..+++.+.+. +.++. +++++ .++.......+...+++++++..+.|+|+.|.|... ..+.... .++
T Consensus 12 iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~--~~e~~~~---aL~--- 83 (265)
T PRK13303 12 IGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAA--LKEHVVP---ILK--- 83 (265)
T ss_pred HHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHH--HHHHHHH---HHH---
Confidence 688888888775 45543 44443 333333333356677888887456999999999653 4555432 332
Q ss_pred CCCCeEEEEeCCC---CHHHHHHHHHHHhh
Q 022170 77 SVRPQLLIDSSTI---DPQTSRNISAAVSN 103 (301)
Q Consensus 77 ~~~~~ivid~st~---~p~~~~~~~~~~~~ 103 (301)
.|+-++..|+. .++...++.+..++
T Consensus 84 --aGk~Vvi~s~~Al~d~~~~~~L~~~A~~ 111 (265)
T PRK13303 84 --AGIDCAVISVGALADEALRERLEQAAEA 111 (265)
T ss_pred --cCCCEEEeChHHhcCHHHHHHHHHHHHH
Confidence 23334434442 45555666665543
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=85.98 E-value=6.2 Score=35.69 Aligned_cols=87 Identities=18% Similarity=0.292 Sum_probs=53.9
Q ss_pred HHHHHh-CCCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 6 ASNLMK-AGYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 6 A~~L~~-~G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+..+.+ .+.++. ++|+++++... +. +....++++++++ +.|+|++|+|+... ..-+.. .++ .+.
T Consensus 21 ~~~~~~~~~~~l~av~d~~~~~~~~--~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H-~~~~~~----al~----aGk 89 (346)
T PRK11579 21 APLIAGTPGLELAAVSSSDATKVKA--DWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTH-FPLAKA----ALE----AGK 89 (346)
T ss_pred HHHHhhCCCCEEEEEECCCHHHHHh--hCCCCceeCCHHHHhcCCCCCEEEEcCCcHHH-HHHHHH----HHH----CCC
Confidence 333443 356765 68999877642 22 4566789999986 57999999997664 333332 222 122
Q ss_pred eEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
.++++- -+.+.++++++.+..++
T Consensus 90 hVl~EKPla~t~~ea~~l~~~a~~ 113 (346)
T PRK11579 90 HVVVDKPFTVTLSQARELDALAKS 113 (346)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHH
Confidence 455553 24566777888776654
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=85.92 E-value=0.71 Score=36.08 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=38.8
Q ss_pred cHHHHHHHHhCCC--eEEEEcCChhhHHHHHhC----------CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 2 GFRMASNLMKAGY--KMAVHDVNCNVMKMFSDM----------GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 2 G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~----------g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
|.++|..|...+. ++.++|+++++++..... .........+.+++||+|+++...
T Consensus 13 G~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 13 GSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp HHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred HHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 7889999988874 799999998876433221 123333556677889999988764
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=85.86 E-value=1.6 Score=39.33 Aligned_cols=78 Identities=19% Similarity=0.164 Sum_probs=55.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
.|.+.|.+|...|.+|.|++.+|-++-+..=.|..+ .+.++++..+|++|+|+.+. +|+... .+.. .+.+
T Consensus 220 vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V-~~m~~Aa~~gDifiT~TGnk-----dVi~~e--h~~~--MkDg 289 (420)
T COG0499 220 VGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRV-MTMEEAAKTGDIFVTATGNK-----DVIRKE--HFEK--MKDG 289 (420)
T ss_pred cchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEE-EEhHHhhhcCCEEEEccCCc-----CccCHH--HHHh--ccCC
Confidence 388999999999999999999987765554457665 46889999999999999843 343321 1211 3456
Q ss_pred eEEEEeCC
Q 022170 81 QLLIDSST 88 (301)
Q Consensus 81 ~ivid~st 88 (301)
.++.+..-
T Consensus 290 aIl~N~GH 297 (420)
T COG0499 290 AILANAGH 297 (420)
T ss_pred eEEecccc
Confidence 67776663
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=85.73 E-value=0.74 Score=41.75 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=44.2
Q ss_pred cHHHHHHHHhCCCe---EEEE--cCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 2 GFRMASNLMKAGYK---MAVH--DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 2 G~~lA~~L~~~G~~---V~~~--dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
|..|.+.|.+++|+ +... .|+..+.-..............+.+.++|+||+|+|... .+++... +.
T Consensus 20 G~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~--s~~~~~~---~~---- 90 (344)
T PLN02383 20 GQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSI--SKKFGPI---AV---- 90 (344)
T ss_pred HHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHH--HHHHHHH---HH----
Confidence 67788889888885 2222 344333222211111121112245578999999999765 4554421 11
Q ss_pred CCCCeEEEEeCCC
Q 022170 77 SVRPQLLIDSSTI 89 (301)
Q Consensus 77 ~~~~~ivid~st~ 89 (301)
..|..|||.|+.
T Consensus 91 -~~g~~VIDlS~~ 102 (344)
T PLN02383 91 -DKGAVVVDNSSA 102 (344)
T ss_pred -hCCCEEEECCch
Confidence 246799999963
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.69 E-value=0.98 Score=38.51 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=29.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|.++|+.|+++|++|.+..|+.++++.++..
T Consensus 18 iG~A~A~~l~~~G~~vvl~aRR~drL~~la~~ 49 (246)
T COG4221 18 IGEATARALAEAGAKVVLAARREERLEALADE 49 (246)
T ss_pred HHHHHHHHHHHCCCeEEEEeccHHHHHHHHHh
Confidence 48899999999999999999999999988764
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.55 E-value=3.3 Score=37.07 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=66.9
Q ss_pred CcHHHHHHHHhCCCeEEEEc-CChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHD-VNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~d-r~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
+|+-+|.++...|-.|+.|| ..+.+ ...+.|++. .+++|++..||+|-+=+|-.++ .+.++... -++. +++
T Consensus 157 IGseVA~r~k~~gm~vI~~dpi~~~~--~~~a~gvq~-vsl~Eil~~ADFitlH~PLtP~-T~~lin~~--tfA~--mKk 228 (406)
T KOG0068|consen 157 IGSEVAVRAKAMGMHVIGYDPITPMA--LAEAFGVQL-VSLEEILPKADFITLHVPLTPS-TEKLLNDE--TFAK--MKK 228 (406)
T ss_pred chHHHHHHHHhcCceEEeecCCCchH--HHHhcccee-eeHHHHHhhcCEEEEccCCCcc-hhhccCHH--HHHH--hhC
Confidence 58889999998888888887 44443 344457765 5899999999999999997666 77776542 2332 568
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHh
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~ 102 (301)
|..+|++|-...-....+.+.+.
T Consensus 229 GVriIN~aRGGvVDe~ALv~Al~ 251 (406)
T KOG0068|consen 229 GVRIINVARGGVVDEPALVRALD 251 (406)
T ss_pred CcEEEEecCCceechHHHHHHHh
Confidence 89999998654444445555554
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=85.28 E-value=1.9 Score=41.06 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=40.1
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCC--CHHHHHhcCCEEEEecCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE--TPFEVAEASDVVITMLPS 56 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~--s~~e~~~~adiVi~~vp~ 56 (301)
|.+.++.|.+.|++|+++|+++...+.+.+.|+.... ...+.+.++|+||.+-.-
T Consensus 24 G~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi 80 (488)
T PRK03369 24 GRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGF 80 (488)
T ss_pred HHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCC
Confidence 6677777889999999999887776666666765432 334556789999886543
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.07 E-value=3.6 Score=32.72 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=53.3
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC-CCC-CCCHH-HHHhcCCEEEEecCCCccchhhhhcCC---Cc-----
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-VPT-KETPF-EVAEASDVVITMLPSSSHQVLDVYNGP---NG----- 70 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g-~~~-~~s~~-e~~~~adiVi~~vp~~~~~~~~v~~~~---~~----- 70 (301)
|...++.|.+.|++|++++ ++..+.+.+.+ +.. ...+. +-++++|+||.++.++. +...+... ..
T Consensus 25 a~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e--~N~~i~~~a~~~~~vn~~ 100 (157)
T PRK06719 25 AYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHA--VNMMVKQAAHDFQWVNVV 100 (157)
T ss_pred HHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHH--HHHHHHHHHHHCCcEEEC
Confidence 4556788889999999995 44444554432 111 11122 23578999999988654 22222110 00
Q ss_pred --------cccCCCCCCC--eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 71 --------LLQGGNSVRP--QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 71 --------~l~~~~~~~~--~ivid~st~~p~~~~~~~~~~~~ 103 (301)
+.+.. ...+ .+-|-+++.+|..++++-+.+++
T Consensus 101 d~~~~~~f~~pa~-v~~~~l~iaisT~G~sP~la~~lr~~ie~ 142 (157)
T PRK06719 101 SDGTESSFHTPGV-IRNDEYVVTISTSGKDPSFTKRLKQELTS 142 (157)
T ss_pred CCCCcCcEEeeeE-EEECCeEEEEECCCcChHHHHHHHHHHHH
Confidence 11100 0122 23344456799999888877764
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=85.05 E-value=2.2 Score=39.66 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
..++..|.+.|.+|.+||..-.... .. ......++.++++++|+|++++.++.
T Consensus 336 ~~~~~~L~~~g~~v~~~DP~~~~~~-~~--~~~~~~~~~~~~~~ad~~v~~t~~~~ 388 (411)
T TIGR03026 336 LDIIELLKEKGAKVKAYDPLVPEEE-VK--GLPLIDDLEEALKGADALVILTDHDE 388 (411)
T ss_pred HHHHHHHHhCCCEEEEECCCCChhh-hh--hcccCCCHHHHHhCCCEEEEecCCHH
Confidence 4678899999999999996533221 11 12235788899999999999999765
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=84.94 E-value=1.5 Score=32.84 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=40.1
Q ss_pred CcHHHHHHHHhC----CCeEE-EEcCC--hhhHHHHHhCCCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKA----GYKMA-VHDVN--CNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~----G~~V~-~~dr~--~~~~~~l~~~g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~ 66 (301)
||+.++..|.+. +++|. +++|+ .+........+...+.++++.++ ..|+|+-|.+ +.. +.+.+.
T Consensus 5 VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~-~~~-~~~~~~ 77 (117)
T PF03447_consen 5 VGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTS-SEA-VAEYYE 77 (117)
T ss_dssp HHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SS-CHH-HHHHHH
T ss_pred HHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCC-chH-HHHHHH
Confidence 588999999876 45654 66888 11111122234567788998888 8999999965 343 566553
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=84.66 E-value=0.72 Score=37.75 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=30.5
Q ss_pred CeEEEEcCChhhHHHHHh--------CC----CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 14 YKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 14 ~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
-++..+|+|+++.+.... .| +..++|.+|++++||+||.++.-.
T Consensus 29 ~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~irvG 84 (183)
T PF02056_consen 29 SEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQIRVG 84 (183)
T ss_dssp EEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE---TT
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEEeeec
Confidence 378899999998764322 23 344789999999999999998855
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=84.57 E-value=2 Score=36.80 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=24.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|+.++..|+++||+|++..|++++....
T Consensus 29 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 29 TGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 48899999999999999999998876544
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.49 E-value=2.1 Score=35.86 Aligned_cols=30 Identities=10% Similarity=0.289 Sum_probs=25.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|+++..+.+.
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (225)
T PRK08177 13 LGLGLVDRLLERGWQVTATVRGPQQDTALQ 42 (225)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCcchHHHH
Confidence 588999999999999999999988765554
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.46 E-value=2.2 Score=38.28 Aligned_cols=79 Identities=23% Similarity=0.240 Sum_probs=42.6
Q ss_pred cHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-----C---CCCC-CCHHHH-HhcCCEEEEecCCCccchhhhhcCCCc
Q 022170 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----G---VPTK-ETPFEV-AEASDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 2 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-----g---~~~~-~s~~e~-~~~adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
|.-|.+.|..+.+ ++..+..+..+=..+.+. | .... .+.++. .++||+||+|+|+... .+.+..
T Consensus 15 G~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg~s--~~~v~~--- 89 (349)
T COG0002 15 GLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHGVS--AELVPE--- 89 (349)
T ss_pred HHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCchhH--HHHHHH---
Confidence 5667777776653 655554333221222221 2 1111 233443 3459999999998764 444422
Q ss_pred cccCCCCCCCeEEEEeCCCC
Q 022170 71 LLQGGNSVRPQLLIDSSTID 90 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~ 90 (301)
++ .++..|||+|+-.
T Consensus 90 l~-----~~g~~VIDLSadf 104 (349)
T COG0002 90 LL-----EAGCKVIDLSADF 104 (349)
T ss_pred HH-----hCCCeEEECCccc
Confidence 22 2345699999853
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=84.33 E-value=2.1 Score=40.23 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=39.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCCh-hhH----HHHHhCCCCC--CCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNC-NVM----KMFSDMGVPT--KETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~-~~~----~~l~~~g~~~--~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.++|..|++.|++|+++|++. +.. +.+.+.|+.. .....+....+|+||.+...+
T Consensus 16 ~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 16 SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVP 79 (450)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCC
Confidence 37899999999999999999875 333 3344445443 223334556799999986643
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.32 E-value=2 Score=37.88 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=26.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..+|+.|+++|++|++.+|++++.+.+.+
T Consensus 52 IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 52 IGEAAAEQFARRGATVVAVARREDLLDAVAD 82 (293)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4889999999999999999999887766543
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=84.07 E-value=1.4 Score=38.96 Aligned_cols=50 Identities=20% Similarity=0.130 Sum_probs=37.8
Q ss_pred HHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCC
Q 022170 4 RMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 4 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
-+++.|.+.|++|.+|.-.... ..+ .|+....+.+++++++|+||+++|-
T Consensus 15 ~~~~~l~~~g~~v~~~g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~p~~~ 64 (287)
T TIGR02853 15 ELIRKLEELDAKISLIGFDQLE-DGF--TGAVKCELLELDLTTLDVVILPVPG 64 (287)
T ss_pred HHHHHHHHCCCEEEEEeccccc-ccc--ccceeecchhhhhccCCEEEECCcc
Confidence 4789999999999988754210 112 2667777888889999999999994
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.02 E-value=1.6 Score=37.78 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=26.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (274)
T PRK05693 13 IGRALADAFKAAGYEVWATARKAEDVEALAA 43 (274)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4889999999999999999999887766544
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=83.87 E-value=1.5 Score=36.50 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=29.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|.++|++|.+.|.+|++..|+.++.+...+.
T Consensus 17 IGl~lak~f~elgN~VIi~gR~e~~L~e~~~~ 48 (245)
T COG3967 17 IGLALAKRFLELGNTVIICGRNEERLAEAKAE 48 (245)
T ss_pred hhHHHHHHHHHhCCEEEEecCcHHHHHHHHhc
Confidence 58999999999999999999999998887765
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=83.70 E-value=1.2 Score=39.92 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=27.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|..|++.|++|.+++|++++.+.+.+
T Consensus 65 IG~alA~~La~~G~~Vil~~R~~~~l~~~~~ 95 (320)
T PLN02780 65 IGKGFAFQLARKGLNLVLVARNPDKLKDVSD 95 (320)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=83.67 E-value=6.3 Score=35.72 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=51.5
Q ss_pred CCeEE-EEcCChhhHHHHHhCC-CCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeC-
Q 022170 13 GYKMA-VHDVNCNVMKMFSDMG-VPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSS- 87 (301)
Q Consensus 13 G~~V~-~~dr~~~~~~~l~~~g-~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s- 87 (301)
+++|. ++|+++++.+...+.+ ....+|.+++++ +.|+|++|+|+... .+-+.. .++. +..++++--
T Consensus 27 ~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H-~~~~~~----al~a----GkhVl~EKPl 97 (344)
T PRK10206 27 SWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH-FEYAKR----ALEA----GKNVLVEKPF 97 (344)
T ss_pred CEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH-HHHHHH----HHHc----CCcEEEecCC
Confidence 46665 6899987653333344 567789999985 57999999997754 333322 2221 223555532
Q ss_pred CCCHHHHHHHHHHHhh
Q 022170 88 TIDPQTSRNISAAVSN 103 (301)
Q Consensus 88 t~~p~~~~~~~~~~~~ 103 (301)
+.+..+++++.+..++
T Consensus 98 a~~~~ea~~l~~~a~~ 113 (344)
T PRK10206 98 TPTLAEAKELFALAKS 113 (344)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4466777888777654
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.61 E-value=2 Score=36.57 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=26.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
.|..++..|.+.|++|++.+|++++.+.+.+
T Consensus 12 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 42 (248)
T PRK10538 12 FGECITRRFIQQGHKVIATGRRQERLQELKD 42 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3789999999999999999999887766543
|
|
| >PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1 | Back alignment and domain information |
|---|
Probab=83.55 E-value=4.9 Score=30.31 Aligned_cols=85 Identities=14% Similarity=0.179 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCC--HHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHH
Q 022170 180 MAVSMLGVSEALTLGQSLGIS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASA 257 (301)
Q Consensus 180 ~~~~~~~~~E~~~l~~~~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a 257 (301)
.......+.|+..++++.|++ .+.+.+.+.......+ .. .+.+. +|+..+- -.+.--=...+++.+
T Consensus 37 ~~~~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~--~~---~~SM~------~D~~~gr-~tEid~i~G~vv~~a 104 (125)
T PF08546_consen 37 RELIRALMREVIAVARALGIPLDPDDLEEAIERLIRSTP--DN---RSSML------QDIEAGR-PTEIDYINGYVVRLA 104 (125)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTT--TT-----HHH------HHHHTTB---SHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC--Cc---cccHH------HHHHHcc-cccHHHHHHHHHHHH
Confidence 344557889999999999964 4333333322110000 00 00011 1121111 112223357899999
Q ss_pred HHcCCCchHHHHHHHHHHH
Q 022170 258 KEVGVDCPLTSQAQDIYAK 276 (301)
Q Consensus 258 ~~~g~~~p~~~~~~~~~~~ 276 (301)
+++|+++|..+.++++.+.
T Consensus 105 ~~~gv~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 105 KKHGVPTPVNETIYALVKA 123 (125)
T ss_dssp HHTT---HHHHHHHHHHHH
T ss_pred HHHCCCCcHHHHHHHHHHH
Confidence 9999999999999988764
|
1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B .... |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.41 E-value=0.96 Score=40.85 Aligned_cols=78 Identities=14% Similarity=0.066 Sum_probs=45.3
Q ss_pred cHHHHHHHHhCCCeE---EEEcCChhhHHHHHhCC--CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 2 GFRMASNLMKAGYKM---AVHDVNCNVMKMFSDMG--VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 2 G~~lA~~L~~~G~~V---~~~dr~~~~~~~l~~~g--~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
|..+.+.|.++||++ ....++++.-+.+.-.+ +...+...+.+.++|+||+|+|... .+++... ++
T Consensus 14 G~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~--s~~~~~~---~~---- 84 (334)
T PRK14874 14 GREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSV--SKKYAPK---AA---- 84 (334)
T ss_pred HHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHH--HHHHHHH---HH----
Confidence 778899999988864 44544433222222112 2222111233478999999999654 4555432 22
Q ss_pred CCCCeEEEEeCCC
Q 022170 77 SVRPQLLIDSSTI 89 (301)
Q Consensus 77 ~~~~~ivid~st~ 89 (301)
..|..|||.|+-
T Consensus 85 -~~G~~VIDlS~~ 96 (334)
T PRK14874 85 -AAGAVVIDNSSA 96 (334)
T ss_pred -hCCCEEEECCch
Confidence 245689999863
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=83.35 E-value=2.4 Score=37.77 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=41.2
Q ss_pred CcHHHHHHHHhCCC-eEE-EEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGY-KMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
.|.-|.+.|.++.+ ++. +..++. .. ..+.++..+++|++|+|+|+.. ..+.... +. .
T Consensus 13 ~G~el~rlL~~HP~~el~~l~s~~~----------~~-~~~~~~~~~~~D~vFlalp~~~--s~~~~~~---~~-----~ 71 (310)
T TIGR01851 13 TGLQIRERLSGRDDIELLSIAPDRR----------KD-AAERAKLLNAADVAILCLPDDA--AREAVSL---VD-----N 71 (310)
T ss_pred hHHHHHHHHhCCCCeEEEEEecccc----------cC-cCCHhHhhcCCCEEEECCCHHH--HHHHHHH---HH-----h
Confidence 36778888887653 333 223321 11 1245566688999999999765 4554432 11 2
Q ss_pred CCeEEEEeCC
Q 022170 79 RPQLLIDSST 88 (301)
Q Consensus 79 ~~~ivid~st 88 (301)
.|..|||.|+
T Consensus 72 ~g~~VIDlSa 81 (310)
T TIGR01851 72 PNTCIIDAST 81 (310)
T ss_pred CCCEEEECCh
Confidence 4678999996
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=83.28 E-value=2.1 Score=40.18 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=37.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhh----HHHHHhCCCCCC--CCHHHHHhc-CCEEEEec
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNV----MKMFSDMGVPTK--ETPFEVAEA-SDVVITML 54 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~----~~~l~~~g~~~~--~s~~e~~~~-adiVi~~v 54 (301)
+|.+.|+.|++.|++|+++|+++.. .+.+.+.|+... ....+.... .|+||.+-
T Consensus 16 ~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 16 SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 4788999999999999999986532 344656676543 233444444 89888754
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=83.27 E-value=2.3 Score=40.06 Aligned_cols=52 Identities=27% Similarity=0.468 Sum_probs=36.3
Q ss_pred cHH-HHHHHHhCCCeEEEEcCChh-hHHHHHhCCCCCCC-CHHHHHhcCCEEEEe
Q 022170 2 GFR-MASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKE-TPFEVAEASDVVITM 53 (301)
Q Consensus 2 G~~-lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~-s~~e~~~~adiVi~~ 53 (301)
|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+.... ...+.+.++|+|+.+
T Consensus 11 Gm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 11 GMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVS 65 (448)
T ss_pred HHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEEC
Confidence 454 88999999999999997553 33456666765532 223445679988875
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=82.96 E-value=2.4 Score=40.05 Aligned_cols=53 Identities=25% Similarity=0.350 Sum_probs=37.0
Q ss_pred cHH-HHHHHHhCCCeEEEEcCChh-hHHHHHhCCCCCC-CCHHHHHhcCCEEEEec
Q 022170 2 GFR-MASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTK-ETPFEVAEASDVVITML 54 (301)
Q Consensus 2 G~~-lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g~~~~-~s~~e~~~~adiVi~~v 54 (301)
|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+... ....+.+.++|+|+.+-
T Consensus 19 G~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 19 GMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred hHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECC
Confidence 566 78899999999999997543 3445666676553 22334556799988753
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=82.86 E-value=3.3 Score=36.48 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=48.9
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhH--HHHHhCCCCC-CCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCcccc
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVM--KMFSDMGVPT-KETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQ 73 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~--~~l~~~g~~~-~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~ 73 (301)
||+.++..+.+. +.++. ++|+++++. +...+.|+.. .++.+++++ +.|+|++|+|+... .+.... .+
T Consensus 12 IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H--~e~a~~---al- 85 (285)
T TIGR03215 12 IGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAH--ARHARL---LA- 85 (285)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHH--HHHHHH---HH-
Confidence 356666666643 56655 679988763 3344557654 457787775 57889999997654 333221 12
Q ss_pred CCCCCCCeEEEEeCCCC
Q 022170 74 GGNSVRPQLLIDSSTID 90 (301)
Q Consensus 74 ~~~~~~~~ivid~st~~ 90 (301)
..|+.++|.+...
T Consensus 86 ----~aGk~VIdekPa~ 98 (285)
T TIGR03215 86 ----ELGKIVIDLTPAA 98 (285)
T ss_pred ----HcCCEEEECCccc
Confidence 2456777766543
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.73 E-value=1.6 Score=37.73 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=26.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 20 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (263)
T PRK08339 20 IGFGVARVLARAGADVILLSRNEENLKKAR 49 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766554
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=82.67 E-value=2.1 Score=38.39 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=39.3
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHHHhC---------CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDM---------GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~---------g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
.|.++|..|+..|. ++.++|++.++++..... ......+.-+.+++||+||++-..
T Consensus 17 vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 17 VGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 38899999998887 799999988875433221 122223344668999999998764
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.67 E-value=2.8 Score=38.74 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhh
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV 64 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v 64 (301)
..++..|.+.|.+|.+||.--+... ..++..++++.+++++||.|++..-++. ++.+
T Consensus 319 ~~i~~~L~~~G~~v~~~DP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 375 (388)
T PRK15057 319 QGIMKRIKAKGVEVIIYEPVMKEDS---FFNSRLERDLATFKQQADVIISNRMAEE--LKDV 375 (388)
T ss_pred HHHHHHHHhCCCEEEEECCCCCchh---hcCCeeeCCHHHHHHhCCEEEEcCCcHH--HHhh
Confidence 4688999999999999997533222 3378889999999999999999998765 5654
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=82.34 E-value=1.3 Score=37.66 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=24.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~ 26 (301)
+|.++|+.|++.|++|++.+|++++.
T Consensus 8 iG~aia~~l~~~Ga~V~~~~~~~~~~ 33 (241)
T PF13561_consen 8 IGRAIARALAEEGANVILTDRNEEKL 33 (241)
T ss_dssp HHHHHHHHHHHTTEEEEEEESSHHHH
T ss_pred hHHHHHHHHHHCCCEEEEEeCChHHH
Confidence 58999999999999999999999874
|
... |
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.33 E-value=1.6 Score=37.06 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=27.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|..+++.|++.|++|++.+|++++.+.+.+.
T Consensus 13 iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 13 IGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 48899999999999999999999887776543
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=82.22 E-value=3.3 Score=36.67 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=35.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHH---HHHhC-----C-------CCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMK---MFSDM-----G-------VPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~---~l~~~-----g-------~~~~~s~~e~~~~adiVi~~vp 55 (301)
+|+.++..|+++||+|.+.+|+++... .+... . +.-..+..++++++|+||-+..
T Consensus 16 IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~ 85 (322)
T PLN02662 16 IASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHTAS 85 (322)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEeCC
Confidence 489999999999999999888765432 21111 1 1111245566677888877654
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=82.09 E-value=2.8 Score=37.83 Aligned_cols=55 Identities=13% Similarity=0.210 Sum_probs=36.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----C-----------CCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----G-----------VPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g-----------~~~~~s~~e~~~~adiVi~~vp 55 (301)
+|+.++..|++.||+|.+.+|+++..+.+... + +.-..++.++++++|+||-+..
T Consensus 17 IGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~A~ 86 (351)
T PLN02650 17 IGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHVAT 86 (351)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEeCC
Confidence 48999999999999999998887655432210 1 1111244566777888887653
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=82.00 E-value=2.5 Score=40.72 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=37.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCC--CCCHHHH-HhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT--KETPFEV-AEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~--~~s~~e~-~~~adiVi~~vp~ 56 (301)
+|.+++..|++.|++|++++|+.++.+.+.+. +... ..+..+. ...+|+|+-|.|-
T Consensus 390 agrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~v 449 (529)
T PLN02520 390 AGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSV 449 (529)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccC
Confidence 47899999999999999999999998888653 2111 1122221 1346777767663
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=81.98 E-value=2.5 Score=35.54 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=25.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|..+++.|+++||+|++.+|++++.+.+
T Consensus 17 iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 17 IGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 48899999999999999999998876544
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=81.93 E-value=2.9 Score=34.80 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=23.1
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~ 30 (301)
+|+.+|.+|++.|. +++++|.+.=....+.
T Consensus 32 lGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~ 62 (202)
T TIGR02356 32 LGSPAALYLAGAGVGTIVIVDDDHVDLSNLQ 62 (202)
T ss_pred HHHHHHHHHHHcCCCeEEEecCCEEcccchh
Confidence 48899999999996 8999998754433343
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=81.90 E-value=2.7 Score=37.52 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=37.1
Q ss_pred CcHHHHHHHHhCCCe--EEEEcCCh--hhHHHH--------HhCCC----CCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYK--MAVHDVNC--NVMKMF--------SDMGV----PTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~--V~~~dr~~--~~~~~l--------~~~g~----~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
.|..++..|+..|+. |+++||++ ++++.. ...+. ...++ .+.+++||+||+|+..+
T Consensus 12 vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViitag~p 83 (309)
T cd05294 12 VGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIITAGVP 83 (309)
T ss_pred HHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEecCCC
Confidence 378899999999874 99999965 433211 11121 12234 45689999999999754
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=81.73 E-value=2.7 Score=39.86 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=37.5
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHH-HhCCCCCCC--CHHHHHhcCCEEEEe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKE--TPFEVAEASDVVITM 53 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l-~~~g~~~~~--s~~e~~~~adiVi~~ 53 (301)
|.++|+.|.+.|++|+++|+++....++ .+.|+.... ...+.+.++|+||.+
T Consensus 27 G~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 27 GRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTS 81 (473)
T ss_pred HHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeC
Confidence 6789999999999999999887665443 344765532 233446678988876
|
|
| >TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | Back alignment and domain information |
|---|
Probab=81.61 E-value=3 Score=39.29 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCeEEEEcCChh--hHHHHHhCCCCCC--CCHHHHHhcCCEEEEe
Q 022170 3 FRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTK--ETPFEVAEASDVVITM 53 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~--~~~~l~~~g~~~~--~s~~e~~~~adiVi~~ 53 (301)
++||+.|.+.|++|+++|.++. ..+.+.+.|++.. .+......++|+|+.+
T Consensus 13 ~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~S 67 (448)
T TIGR01081 13 GGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQLEPKPDLVVIG 67 (448)
T ss_pred HHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCCCHHHCCCCCCEEEEC
Confidence 5789999999999999997653 2235666677553 2344444568988874
|
Alternate name: murein tripeptide ligase |
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.52 E-value=2.7 Score=36.31 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=25.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 19 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 48 (276)
T PRK05875 19 IGKGVAAGLVAAGAAVMIVGRNPDKLAAAA 48 (276)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 488999999999999999999987765543
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.40 E-value=2 Score=36.37 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=26.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|..|++.|++|.+.+|++++.+++.+
T Consensus 17 IG~aia~~la~~G~~V~~~~r~~~~l~~~~~ 47 (227)
T PRK08862 17 LGRTISCHFARLGATLILCDQDQSALKDTYE 47 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=81.38 E-value=2.4 Score=38.71 Aligned_cols=29 Identities=14% Similarity=0.362 Sum_probs=24.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|+.++..|++.||+|.+..|+.+..+.+
T Consensus 65 IG~~lv~~L~~~G~~V~~~~r~~~~~~~l 93 (367)
T PLN02686 65 LGLAIVDRLLRHGYSVRIAVDTQEDKEKL 93 (367)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58999999999999999888877665444
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.32 E-value=1.8 Score=36.31 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=26.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 12 iG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 12 LGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999888766643
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.88 E-value=2 Score=36.95 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=26.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (261)
T PRK08265 18 IGAAVARALVAAGARVAIVDIDADNGAAVAA 48 (261)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999887666543
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.58 E-value=2 Score=36.86 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=27.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|+.++.+.+.+
T Consensus 17 IG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 17 LGRAIVDRFVAEGARVAVLDKSAAGLQELEA 47 (262)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 5899999999999999999999887776654
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.57 E-value=2 Score=36.95 Aligned_cols=31 Identities=13% Similarity=0.332 Sum_probs=27.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (263)
T PRK06200 18 IGRALVERFLAEGARVAVLERSAEKLASLRQ 48 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999888776654
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=80.32 E-value=2.6 Score=38.63 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=37.2
Q ss_pred CcHHHHHHHHhC-CCeEEEEcCChhhHHHHHhCC-------CC-------CCCCHHHHHhcCCEEEEec
Q 022170 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMG-------VP-------TKETPFEVAEASDVVITML 54 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g-------~~-------~~~s~~e~~~~adiVi~~v 54 (301)
+|+.+++.|+++ ||+|.+.+|++++...+...+ ++ -..++.++++++|+||=+.
T Consensus 26 IGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHlA 94 (386)
T PLN02427 26 IGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINLA 94 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEcc
Confidence 589999999988 599999999877765554321 11 1123455667789888765
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=80.31 E-value=3.1 Score=36.73 Aligned_cols=56 Identities=9% Similarity=0.070 Sum_probs=36.2
Q ss_pred cHHHHHHHHhCCC-eEEEEcCCh---hhHHHHHhC-C----CC-CCCCH------HHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLMKAGY-KMAVHDVNC---NVMKMFSDM-G----VP-TKETP------FEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~~~G~-~V~~~dr~~---~~~~~l~~~-g----~~-~~~s~------~e~~~~adiVi~~vp~~ 57 (301)
+++++..|+..|. +|+++||++ ++.+.+.+. + .. ...++ .+...++|+||-|+|-.
T Consensus 136 arAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~G 207 (288)
T PRK12749 136 STAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVG 207 (288)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECCCCC
Confidence 4667777888885 799999995 477766542 1 10 11122 23455789999998843
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=80.29 E-value=4.5 Score=32.79 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.5
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCCh
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNC 23 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~ 23 (301)
||+.++.+|++.|. +++++|.+.
T Consensus 10 lGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 10 LGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999998 599999876
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=80.25 E-value=3.4 Score=36.72 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=35.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH---h-CC-----------CCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS---D-MG-----------VPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~---~-~g-----------~~~~~s~~e~~~~adiVi~~vp 55 (301)
+|+.++..|++.||+|++..|+++...... . .+ +.-..+..++++..|+||-+..
T Consensus 17 IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~A~ 86 (325)
T PLN02989 17 IASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFHTAS 86 (325)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEEeCC
Confidence 489999999999999998888766433221 1 11 1111234455666787777654
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.14 E-value=3.4 Score=34.82 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=24.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
.|..+++.|++.|++|.+.+|++++.+.+
T Consensus 19 iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~ 47 (239)
T PRK07666 19 IGRAVAIALAKEGVNVGLLARTEENLKAV 47 (239)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 47889999999999999999998766554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 301 | ||||
| 2i9p_A | 319 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 1e-73 | ||
| 2gf2_A | 296 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 1e-73 | ||
| 3obb_A | 300 | Crystal Structure Of A Possible 3-Hydroxyisobutyrat | 1e-39 | ||
| 3q3c_A | 299 | Crystal Structure Of A Serine Dehydrogenase From Ps | 1e-39 | ||
| 3cky_A | 301 | Structural And Kinetic Properties Of A Beta-Hydroxy | 1e-33 | ||
| 3pef_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 6e-29 | ||
| 1vpd_A | 299 | X-Ray Crystal Structure Of Tartronate Semialdehyde | 3e-28 | ||
| 1yb4_A | 295 | Crystal Structure Of The Tartronic Semialdehyde Red | 4e-28 | ||
| 3pdu_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 2e-25 | ||
| 1wp4_A | 289 | Structure Of Tt368 Protein From Thermus Thermophilu | 9e-24 | ||
| 2uyy_A | 316 | Structure Of The Cytokine-Like Nuclear Factor N-Pac | 1e-22 | ||
| 2cvz_A | 289 | Structure Of Hydroxyisobutyrate Dehydrogenase From | 2e-21 | ||
| 3doj_A | 310 | Structure Of Glyoxylate Reductase 1 From Arabidopsi | 3e-21 | ||
| 4dll_A | 320 | Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Re | 5e-15 | ||
| 3qha_A | 296 | Crystal Structure Of A Putative Oxidoreductase From | 2e-09 | ||
| 3g0o_A | 303 | Crystal Structure Of 3-Hydroxyisobutyrate Dehydroge | 3e-09 |
| >pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Complexed With Nad+ Length = 319 | Back alignment and structure |
|
| >pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Length = 296 | Back alignment and structure |
|
| >pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate Dehydrogenase From Pseudomonas Aeruginosa Pao1 Length = 300 | Back alignment and structure |
|
| >pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From Pseudomonas Aeruginosa Pao1 In Complex With Nad Length = 299 | Back alignment and structure |
|
| >pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301 | Back alignment and structure |
|
| >pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Metallireducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde Reductase [salmonella Typhimurium Lt2] Length = 299 | Back alignment and structure |
|
| >pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 Length = 295 | Back alignment and structure |
|
| >pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Sulfurreducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316 | Back alignment and structure |
|
| >pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310 | Back alignment and structure |
|
| >pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase From Polaromonas Sp. Js666 Length = 320 | Back alignment and structure |
|
| >pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Mycobacterium Avium 104 Length = 296 | Back alignment and structure |
|
| >pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase (Ygbj) From Salmonella Typhimurium Length = 303 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296 | Back alignment and structure |
|---|
Score = 376 bits (969), Expect = e-132
Identities = 146/298 (48%), Positives = 185/298 (62%), Gaps = 13/298 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 11 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSIN- 69
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V V +D
Sbjct: 70 AIEAYSGANGILKKVK--KGSLLIDSSTIDPAVSKELAKEVEK----------MGAVFMD 117
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAKICNN+ +
Sbjct: 118 APVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLL 177
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240
A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GG
Sbjct: 178 AISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGG 237
Query: 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 298
F + LMAKDL LA SA L S A IY +C G+ KDFS VFQ +
Sbjct: 238 FGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREEE 295
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 | Back alignment and structure |
|---|
Score = 323 bits (831), Expect = e-111
Identities = 99/295 (33%), Positives = 148/295 (50%), Gaps = 21/295 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NL+K G + D+ + G E +VA ASD++ T LP++
Sbjct: 15 MGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGI- 73
Query: 61 VLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 119
V V NGP G+L + +++D S++ P ++ ++ EK +
Sbjct: 74 VETVMNGPGGVLSA---CKAGTVIVDMSSVSPSSTLKMAKV-----AAEK-----GIDYV 120
Query: 120 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 179
DAPVSGG AEAGTLT MVG SE ++ +P+ +GK+ + G G G A KI NNL
Sbjct: 121 DAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLL 180
Query: 180 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239
+ +M ++EAL LG G+ T+ +I+ SS R ++ ++ ME S ++ G
Sbjct: 181 LGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAK------MEKFIMSGDFAG 234
Query: 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
GFA L KDL LAL + KE V P+T+ A I+ G +D S V + +
Sbjct: 235 GFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVW 289
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296 | Back alignment and structure |
|---|
Score = 315 bits (810), Expect = e-108
Identities = 75/287 (26%), Positives = 121/287 (42%), Gaps = 18/287 (6%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA+ + + + V+D+ M ++ G ++ +VA A + IT+L + Q
Sbjct: 26 MGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHITVLDDA--Q 83
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V +V G + G ++ STI T+ ++ LK + + ++D
Sbjct: 84 VREVVGELAGHAKPG-----TVIAIHSTISDTTAVELARD-----LKAR-----DIHIVD 128
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
APVSGG AA G L MVG + Y+ KP F I+ G G G K+ N+
Sbjct: 129 APVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLT 188
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNY-GG 239
S EA+ L ++ G+ L +++ + A + + + P + Y
Sbjct: 189 FTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPF 248
Query: 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 286
L KDL+LALA + V VD PL A + A H K+
Sbjct: 249 LHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEKE 295
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
Score = 292 bits (750), Expect = 3e-99
Identities = 103/295 (34%), Positives = 148/295 (50%), Gaps = 22/295 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG M+ NL+KAGY + V D N + G T T +AE DV+ITMLP+S H
Sbjct: 16 MGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPH- 74
Query: 61 VLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 119
V +V G NG+++G +P +LID S+I P SR IS A LK K ML
Sbjct: 75 VKEVALGENGIIEG---AKPGTVLIDMSSIAPLASREISDA-----LKAK-----GVEML 121
Query: 120 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 179
DAPVSGG A GTL+ MVGG + + L +M + ++ G G G K+ N +
Sbjct: 122 DAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVI 181
Query: 180 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239
+A+++ +SEALTL G++ + + + A D+ P + RN+
Sbjct: 182 VALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------MVMDRNFKP 234
Query: 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
GF L KDL AL ++ VG PLT+ ++ L +GH + D S + +Y
Sbjct: 235 GFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYY 289
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287 | Back alignment and structure |
|---|
Score = 289 bits (742), Expect = 4e-98
Identities = 86/295 (29%), Positives = 131/295 (44%), Gaps = 22/295 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NL+KAG + + + + + + +G TP EV E+ V ML +
Sbjct: 12 MGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAA- 70
Query: 61 VLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 119
+V G +G+L+G + + +D ST+DP TS+ I A + K L
Sbjct: 71 AEEVCFGKHGVLEG---IGEGRGYVDMSTVDPATSQRIGVA-----VVAK-----GGRFL 117
Query: 120 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 179
+APVSG AE GTL + G + Y A P F MGK I+ G G GA K+ N+
Sbjct: 118 EAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMV 177
Query: 180 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239
M M E L LG+ G++ + ++ + + + RN+
Sbjct: 178 MGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGG-------LIRDRNFAP 230
Query: 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
F K M KDL LA+A VG ++ A +++ G +DFS +F+ Y
Sbjct: 231 AFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTY 285
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289 | Back alignment and structure |
|---|
Score = 285 bits (731), Expect = 2e-96
Identities = 78/295 (26%), Positives = 129/295 (43%), Gaps = 27/295 (9%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG+ MA +L + + + ++ + G + P E + V+ T LP++
Sbjct: 12 MGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGS--EAVPLERVAEARVIFTCLPTTRE- 68
Query: 61 VLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 119
VY L +R +D+++ +P+ SR ++ L+EK L
Sbjct: 69 ---VYEVAEALYPY---LREGTYWVDATSGEPEASRRLAER-----LREK-----GVTYL 112
Query: 120 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 179
DAPVSGG AEAGTLT M+GG E+A + +P L+ K ++ G G G A K NN
Sbjct: 113 DAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPF-LAYAKKVVHVGPVGAGHAVKAINNAL 171
Query: 180 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239
+AV++ E L G+SA +++N+SS R ++++ P +R +
Sbjct: 172 LAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQR------VLTRAFPK 225
Query: 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
FA L+ KDL +A+ PL A+++Y D +
Sbjct: 226 TFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLL 280
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287 | Back alignment and structure |
|---|
Score = 283 bits (726), Expect = 1e-95
Identities = 83/295 (28%), Positives = 133/295 (45%), Gaps = 22/295 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA+NL++AG+ + V + N +G +P EV A D+ I ML +
Sbjct: 12 MGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAA- 70
Query: 61 VLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 119
+V G NG+L+G + + ID ST+D +TS I AA + + L
Sbjct: 71 AREVCFGANGVLEG---IGGGRGYIDMSTVDDETSTAIGAA-----VTARGGR-----FL 117
Query: 120 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 179
+APVSG AE GTL + G + + A P F ++GK ++ G G GA K+ N+
Sbjct: 118 EAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMI 177
Query: 180 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239
M M + E + LG++ G+ L ++L++ + + S +
Sbjct: 178 MGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQ-------MLLSGEFPT 230
Query: 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
F K M KDL LA+ +G + A + + + GH +DF+ VF+
Sbjct: 231 SFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVL 285
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303 | Back alignment and structure |
|---|
Score = 281 bits (721), Expect = 8e-95
Identities = 75/297 (25%), Positives = 127/297 (42%), Gaps = 24/297 (8%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-VPTKETPFEVAEASDVVITMLPSSSH 59
MG A + ++AG D+N G + E A D ++ ++ +++
Sbjct: 18 MGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQ 77
Query: 60 QVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM 118
V V G +G+ ++P ++ SSTI ++ I+AA L N M
Sbjct: 78 -VRQVLFGEDGVAHL---MKPGSAVMVSSTISSADAQEIAAA-----LTAL-----NLNM 123
Query: 119 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNN 177
LDAPVSGG + A G +T M GSE A+ KP+ ++ N G G+ KI +
Sbjct: 124 LDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQ 183
Query: 178 LTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNY 237
L V + +EA+ L GI + ++ ++ W + N + V++ +Y
Sbjct: 184 LLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFE--NRMQHVVD-----GDY 236
Query: 238 GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
A + KDL L +AK + PL S A +++ G+ +D S V + +
Sbjct: 237 TPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIF 293
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 268 bits (687), Expect = 2e-89
Identities = 79/295 (26%), Positives = 120/295 (40%), Gaps = 22/295 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG + SNL+K G+ + V + +F G TP EV D+ +
Sbjct: 41 MGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKA- 99
Query: 61 VLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 119
D+ GP+G+LQG +RP + +D ST+D T ++ + + L
Sbjct: 100 AKDLVLGPSGVLQG---IRPGKCYVDMSTVDADTVTELAQV-----IVSRGGR-----FL 146
Query: 120 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 179
+APVSG + G L + G Y+ F +MGK + + G GN A + N+
Sbjct: 147 EAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMV 206
Query: 180 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239
M ++E LTL Q G S TL ILN D + N+
Sbjct: 207 QGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQ---NI----LQGNFKP 259
Query: 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
F K + KDL LA+A V P+ + A ++Y + D S V++ Y
Sbjct: 260 DFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAY 314
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Score = 266 bits (683), Expect = 6e-89
Identities = 84/295 (28%), Positives = 123/295 (41%), Gaps = 22/295 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG M+ NL+K G+K+ V + + + G E+P EV + I ML
Sbjct: 32 MGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCA- 90
Query: 61 VLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 119
L V G+L+ + + ID ST+D +TS I+ A + K +
Sbjct: 91 ALSVVFDKGGVLEQ---ICEGKGYIDMSTVDAETSLKINEA-----ITGKGGR-----FV 137
Query: 120 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 179
+ PVSG AE G L + G + ++ + P F +GK + Y G GNGA K+ N+
Sbjct: 138 EGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMI 197
Query: 180 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239
M M SE L L G+S+ TL IL+ + P +Y
Sbjct: 198 MGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGP-------SMNKSSYPP 250
Query: 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
F K KD+ LALA E V P+ + A + + K G DFS V +
Sbjct: 251 AFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAV 305
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 1e-86
Identities = 88/295 (29%), Positives = 136/295 (46%), Gaps = 23/295 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA NL +AG+++ V + V +G ET +V E +D++ M+P +
Sbjct: 14 MGSPMAINLARAGHQLHVTTIG-PVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQ- 71
Query: 61 VLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 119
V DV G +G + + ++D S+I P ++ + + E L
Sbjct: 72 VEDVLFGEHGCAKT---SLQGKTIVDMSSISPIETKRFAQR-----VNEM-----GADYL 118
Query: 120 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 179
DAPVSGG + A GTL+ MVGG + + KPLF +GKN GG G+G K+ N +
Sbjct: 119 DAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQII 178
Query: 180 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239
+A+++ VSEAL G + + L A + + +R +
Sbjct: 179 VALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGE-------RMINRTFEP 231
Query: 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
GF L KDLNLAL SAK + ++ P T+ Q+++ NG D S + Q
Sbjct: 232 GFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQAL 286
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 240 bits (615), Expect = 2e-78
Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 24/295 (8%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA L +AGY + V + + +G E A +D+V++ML + +
Sbjct: 42 MGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAV- 100
Query: 61 VLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 119
V DV G+ ++P L +D ++I P+ +R+ +A L + L
Sbjct: 101 VQDVLFA-QGVAAA---MKPGSLFLDMASITPREARDHAAR-----LGALGIA-----HL 146
Query: 120 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 179
D PVSGG + AE GTL M GG ++ + PL G+ + G G+G K+ N +
Sbjct: 147 DTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGR-ATHVGPHGSGQLTKLANQMI 205
Query: 180 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239
+ +++ V+EAL G + + + + A + M R++
Sbjct: 206 VGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQ---RM----VERDFAP 258
Query: 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
+ KD+ ALA+A+E+G D P+T + +YA+ E+G D S +F
Sbjct: 259 RARLSIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVEL 313
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 224 bits (572), Expect = 3e-72
Identities = 41/295 (13%), Positives = 95/295 (32%), Gaps = 22/295 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA L+K G ++A+ + + G E+ AS I +L +
Sbjct: 20 MGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHA- 78
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+V G G+ + + + ++D +T + + + +
Sbjct: 79 THEVL-GMPGVARA---LAHRTIVDYTTNAQDEGLALQGL-----VNQA-----GGHYVK 124
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180
+ + G +A++ + L + +T++ A A + +
Sbjct: 125 GMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAH-A 183
Query: 181 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNY-GG 239
+M+ EA+ G G+ S ++L +S + ++++ G
Sbjct: 184 FAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVA-----DALEEAVRRLETQDFKGD 238
Query: 240 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 294
+ A S GV P+ + + G+ +D + + +
Sbjct: 239 QARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSF 293
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 4e-48
Identities = 54/291 (18%), Positives = 93/291 (31%), Gaps = 32/291 (10%)
Query: 1 MGFRMASNLMKAG-YKMAVHDVNCN--VMKMFSDMGVPTKETPFEVAEASDVVITMLPSS 57
+AS L +AG MA +D ++GV K + EVA DV+ +++ +
Sbjct: 35 AASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQ 94
Query: 58 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV 117
+ L+V L G L D ++ P R I +S +
Sbjct: 95 AA--LEVAQQAGPHLCEG-----ALYADFTSCSPAVKRAIGDVIS--------RHRPSAQ 139
Query: 118 MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNN 177
V V G +V + A + L + + G G A K+C +
Sbjct: 140 YAAVAVMSAV--KPHGHRVPLVVDGDGARRFQAAFTLYGCRIEVLDGEVGGAALLKMCRS 197
Query: 178 LTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNY 237
+ EAL + +G++ L + S + V +E A R
Sbjct: 198 AVLKGLEALFLEALAAAEKMGLADRVLASLDASFPEHHLRDLALYLVERNLE--HADR-- 253
Query: 238 GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFS 288
A +L A+ VGV+ + ++ + K
Sbjct: 254 --------RAHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAALKQRP 296
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 2e-44
Identities = 41/296 (13%), Positives = 91/296 (30%), Gaps = 42/296 (14%)
Query: 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-------GVPTKETPFEVAEASDVVIT 52
+A L ++A +D+ N + GV + +A A DVV++
Sbjct: 35 AAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAGIACA-DVVLS 93
Query: 53 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 112
++ + V L + ID +++ P T + A++
Sbjct: 94 LVVGA--ATKAVAASAAPHLSDE-----AVFIDLNSVGPDTKALAAGAIAT--------- 137
Query: 113 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAA 171
++ V V + G ++G N G G ++
Sbjct: 138 -GKGSFVEGAVMARVPPYAEKVPILVAGRRAVE---VAERLNALGMNLEAVGETPGQASS 193
Query: 172 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 231
K+ ++ + + EAL+ + G++ L + + W + + E
Sbjct: 194 LKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETFPGLDWRDVADYYLSRTFE-- 251
Query: 232 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDF 287
+R ++ A + + G++ P++ A + A D
Sbjct: 252 HGAR----------RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLS 297
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264 | Back alignment and structure |
|---|
Score = 127 bits (319), Expect = 4e-35
Identities = 36/230 (15%), Positives = 70/230 (30%), Gaps = 27/230 (11%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
+ +AS L G ++ + + V ET E + VVI+ +
Sbjct: 11 VAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVA- 69
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
L + + +D + I P+T R S+ + +D
Sbjct: 70 -LGA-------ARRAGRHVRGIYVDINNISPETVRMASSLIEKG------------GFVD 109
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLT 179
A + G V A G + + G N G G+ +A K+ +
Sbjct: 110 AAIMGSVRRKGADIRIIASGRDAEEFMKLNR----YGLNIEVRGREPGDASAIKMLRSSY 165
Query: 180 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 229
+ E LT LG+ + ++L + + + + +
Sbjct: 166 TKGVSALLWETLTAAHRLGLEE-DVLEMLEYTEGNDFRESAISRLKSSCI 214
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 1e-08
Identities = 25/238 (10%), Positives = 65/238 (27%), Gaps = 27/238 (11%)
Query: 1 MGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSS 58
+ +A L + G++ + V+ + + EV + + I L S
Sbjct: 21 LATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS- 79
Query: 59 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM 118
++ G I + + + ++ + E
Sbjct: 80 -AFAELLQG----------------IVEGKREEALMVHTAGSIPMNVW-EGHVPHYGVFY 121
Query: 119 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 178
S F+ S + K + ++ N +Y + + +
Sbjct: 122 PMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLS-NRVYDADSEQRKSLHLAAVF 180
Query: 179 TMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRN 236
T + + A L + + + +++ ++ + + G PA R
Sbjct: 181 TCNFTNHMYALAAELLKKYNLPFDVMLPLIDETARKVHELEPKTAQTG-----PAIRY 233
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 29/184 (15%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASD---VVITMLPSS 57
MG M L K G++ V+D+N N ++ G+ + E VV M+P++
Sbjct: 33 MGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA 92
Query: 58 SHQVLDVYNGPNGLLQGGNSVRPQLLID---SSTIDPQTSRNISAAVSNCILKEKKDSWE 114
V + LL + ++ID S D R ++ + ++
Sbjct: 93 V--VDSMLQRMTPLLAAND-----IVIDGGNSHYQD--DIRRADQ------MRAQGITY- 136
Query: 115 NPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF--LSMGKNTIYCGGAGNGAAA 172
+D SGG+ E G M+GG + A + P+F L+ G
Sbjct: 137 ----VDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTLAPGIGAAPRTPGREKREG 191
Query: 173 KICN 176
Sbjct: 192 TAEL 195
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 7e-08
Identities = 32/229 (13%), Positives = 66/229 (28%), Gaps = 22/229 (9%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG R+ + + + +A ++ MG+P + +DVV+ LP +
Sbjct: 23 MGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALP--DNI 79
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD----SWENP 116
+ V ++ G +++ P A + + E
Sbjct: 80 IEKVAEDIVPRVRPG-----TIVLILDAAAPYAGVMPERADITYFIGHPCHPPLFNDETD 134
Query: 117 VMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICN 176
GG+ A+ + ++ G E+ Y + +M A +
Sbjct: 135 PAARTDYHGGI--AKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEP 192
Query: 177 NLT---MAVSMLGVSEALT-LGQSLGISASTLTKI----LNSSSARCWS 217
L+ + + A+ GI LN A +
Sbjct: 193 GLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHLNVEIAMWFG 241
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Length = 215 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 2e-07
Identities = 21/181 (11%), Positives = 49/181 (27%), Gaps = 29/181 (16%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
+A+ L+ +G+K+ V N E + +V+ + +
Sbjct: 39 FARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQV-TFQEEAVSSPEVIFVAVFREHYS 97
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
L + + ++L+D S Q + + + +
Sbjct: 98 SLCSL---------SDQLAGKILVDVSNPTEQEHLQHRESNA---------EYLASLFPT 139
Query: 121 APVSGGV----------LAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA 170
V + + G +A +A + L+MG + G +
Sbjct: 140 CTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAMGFMPVDMGSLASAW 199
Query: 171 A 171
Sbjct: 200 E 200
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} Length = 201 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 4e-05
Identities = 25/171 (14%), Positives = 47/171 (27%), Gaps = 12/171 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
G + +++ GY + N V + E A SDV++ + +
Sbjct: 30 FGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVL--CYSEAASRSDVIVLAVHREHYD 87
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
L ++ ++LID S S A L + +
Sbjct: 88 FLAELADS---------LKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGAHVVKAFNTIS 138
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 171
A +A F+ G A + ++G + G
Sbjct: 139 AWALQS-GTLDASRQVFVCGNDSKAKDRVMDIARTLGLTPLDQGSLVAAKE 188
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 301 | |||
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 100.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 100.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 100.0 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 100.0 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 100.0 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 100.0 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 100.0 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 100.0 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 100.0 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 100.0 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 100.0 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 100.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 100.0 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 100.0 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 100.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.98 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.98 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.97 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.97 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.97 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.97 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.97 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.97 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.96 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.96 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.95 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.95 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.95 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.94 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.92 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.89 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.88 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.86 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.86 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.85 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.85 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.84 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.83 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.83 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.82 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.81 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.81 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.78 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.78 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.77 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.75 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.75 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.73 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.72 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.69 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.69 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.68 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.67 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.67 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.66 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.65 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.65 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.63 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.61 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.61 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.6 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.6 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.57 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.57 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.31 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.53 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.51 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.5 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.49 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.49 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.48 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.47 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.47 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.47 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.29 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.28 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.2 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.12 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 99.04 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.92 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 98.9 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.85 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.74 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 98.7 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 98.66 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 98.61 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.61 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 98.58 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 98.57 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.57 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 98.57 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 98.56 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 98.53 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.52 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.52 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 98.52 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.51 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 98.51 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 98.5 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 98.5 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 98.49 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 98.49 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 98.49 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 98.48 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.47 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 98.45 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.42 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.36 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 98.36 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.35 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.33 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 98.32 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.31 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.28 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.24 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.2 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.17 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.17 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.09 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.08 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.08 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.0 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.99 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.98 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 97.94 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.82 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.77 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.75 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.72 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.71 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 97.65 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.62 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 97.5 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.5 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.5 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.49 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.46 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 97.45 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 97.45 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.43 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.42 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.4 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.39 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.37 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.34 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.33 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 97.32 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.31 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.31 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.31 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.28 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.27 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.23 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.2 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.2 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.16 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.13 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.11 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.06 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.05 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 97.01 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 96.95 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 96.94 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.94 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 96.93 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 96.93 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 96.91 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.91 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 96.87 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 96.84 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 96.83 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.79 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 96.78 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 96.77 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 96.77 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 96.73 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.72 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.68 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.67 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.63 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 96.58 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 96.57 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 96.56 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.53 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.49 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.45 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 96.39 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 96.36 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 96.29 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.25 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 96.24 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 96.18 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 96.18 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 96.16 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.12 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 96.1 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.08 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.07 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 96.07 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.05 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 95.98 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 95.98 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 95.96 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.95 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.95 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 95.94 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 95.92 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 95.92 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 95.91 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.9 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 95.9 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 95.89 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 95.87 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 95.83 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 95.82 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.81 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 95.81 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 95.77 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 95.77 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 95.76 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 95.73 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.71 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 95.68 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 95.65 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 95.63 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 95.6 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 95.57 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 95.48 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 95.43 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 95.43 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 95.42 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 95.41 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 95.4 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 95.4 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.36 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 95.32 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 95.31 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 95.24 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.2 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 95.14 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 95.04 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 95.04 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 95.01 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 94.94 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 94.86 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 94.72 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 94.67 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 94.57 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 94.43 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 94.4 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 94.39 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 94.38 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 94.33 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 94.28 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 94.22 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 94.2 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 94.12 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 94.02 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 93.95 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 93.89 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 93.84 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 93.84 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 93.8 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 93.64 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 93.61 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 93.59 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 93.42 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 93.4 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 93.4 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 93.39 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 93.32 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 93.31 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 93.3 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 93.28 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 93.25 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 93.2 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 93.16 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 93.11 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 93.08 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 92.98 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 92.97 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 92.9 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 92.79 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 92.75 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 92.33 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 92.29 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 92.26 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 92.22 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 92.21 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 91.7 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 91.68 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 91.61 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 91.48 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 91.38 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 90.94 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 90.93 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 90.91 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 90.91 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 90.9 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 90.73 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 90.7 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 90.62 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 90.58 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 90.49 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 90.48 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 90.44 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 90.39 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 90.32 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 90.23 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 90.21 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 90.16 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 89.83 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 89.78 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 89.74 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 89.73 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 89.63 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 89.48 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 89.46 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 89.45 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 89.43 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 89.39 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 89.38 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 89.38 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 89.32 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 89.32 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 89.26 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 89.24 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 89.05 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 88.97 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 88.82 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 88.7 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 88.64 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 88.61 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 88.56 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 88.55 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 88.55 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 88.46 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 88.45 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 88.34 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 88.32 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 88.2 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 88.15 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 88.09 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 88.02 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 87.95 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 87.87 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 87.85 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 87.75 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 87.68 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 87.67 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 87.61 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 87.6 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 87.56 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 87.55 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 87.48 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 87.36 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 87.34 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 87.28 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 87.17 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 87.08 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 87.04 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 86.86 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 86.78 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 86.66 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 86.55 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 86.46 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 86.38 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 86.17 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 86.15 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 86.15 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 86.07 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 85.91 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 85.81 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 85.81 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 85.8 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 85.72 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 85.7 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 85.65 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 85.61 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 85.56 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 85.49 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 85.49 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 85.36 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 85.3 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 85.15 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 85.0 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 84.82 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 84.81 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 84.75 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 84.75 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 84.73 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 84.7 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 84.66 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 84.65 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 84.65 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 84.6 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 84.55 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 84.43 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 84.4 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 84.22 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 84.15 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 84.11 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 83.98 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 83.91 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 83.84 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 83.78 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 83.59 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 83.59 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 83.55 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 83.54 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 83.48 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 83.46 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 83.44 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 83.4 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 83.4 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 83.35 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 83.35 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 83.35 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 83.32 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 83.26 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 83.25 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 83.23 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 83.14 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 83.11 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 83.1 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 83.05 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 82.96 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 82.93 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 82.9 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 82.89 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 82.86 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 82.84 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 82.82 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 82.82 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 82.79 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 82.78 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 82.77 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 82.75 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 82.73 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 82.63 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 82.56 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 82.38 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 82.29 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 82.29 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 82.22 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 82.19 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 82.13 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 82.0 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 81.94 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 81.92 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 81.84 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 81.77 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 81.73 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 81.63 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 81.53 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 81.43 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 81.42 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 81.38 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 81.19 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 81.15 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 81.11 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 81.1 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 81.04 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 81.0 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 80.97 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 80.94 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 80.85 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 80.82 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 80.81 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 80.75 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 80.71 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 80.68 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 80.67 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 80.62 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 80.6 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 80.59 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 80.41 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 80.37 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 80.37 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 80.33 |
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-59 Score=411.75 Aligned_cols=285 Identities=43% Similarity=0.691 Sum_probs=270.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||++|+++||+|++|||++++++.+.+.|++.++|+.|+++.+|+||+|||++.+ +++|+.+..++++. ..+|
T Consensus 14 MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~-v~~V~~~~~g~~~~--~~~g 90 (300)
T 3obb_A 14 MGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQH-VEGLYLDDDGLLAH--IAPG 90 (300)
T ss_dssp THHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHH-HHHHHHSSSSSTTS--CCC-
T ss_pred HHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHH-HHHHHhchhhhhhc--CCCC
Confidence 99999999999999999999999999999999999999999999999999999999998 99999988888876 4578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||++|.+++++++.+.+. +++|+|+||+|++..++.|++++|+||+++++++++|+|+.+++++
T Consensus 91 ~iiId~sT~~p~~~~~~a~~~~~~----------G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i 160 (300)
T 3obb_A 91 TLVLECSTIAPTSARKIHAAARER----------GLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNI 160 (300)
T ss_dssp CEEEECSCCCHHHHHHHHHHHHTT----------TCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEE
T ss_pred CEEEECCCCCHHHHHHHHHHHHHc----------CCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHHHHHHhCCCE
Confidence 999999999999999999998752 3899999999999999999999999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+|+|+.|+|+.+|+++|++.+.++.+++|++.|+++.|+|+++++++++.+++.+|.++.+.|.+......+..++|+++
T Consensus 161 ~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~ 240 (300)
T 3obb_A 161 FHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGG 240 (300)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSS
T ss_pred EEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchHHHhhccccchhhhccccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999998888887777667788999999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhCCC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 298 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 298 (301)
|+++.+.||++++.+++++.|+++|+++.+.++|+++.++|+|++||++++++|++..
T Consensus 241 f~~~l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~sal~~~~e~~~ 298 (300)
T 3obb_A 241 FMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPTQ 298 (300)
T ss_dssp SBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTTC
T ss_pred chHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999997654
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-54 Score=382.03 Aligned_cols=275 Identities=21% Similarity=0.328 Sum_probs=246.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||++|+++||+|++|||++++++.+.+.|+..++|+.|+++.+|+||+|||++.+ +++++.+ .+++. ..++
T Consensus 16 MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~-~~~v~~~--~~~~~--~~~~ 90 (297)
T 4gbj_A 16 LGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAA-VEELFSM--ELVEK--LGKD 90 (297)
T ss_dssp THHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHH-HHHHSCH--HHHHH--HCTT
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhh-HHHHHHH--HHHhh--cCCC
Confidence 99999999999999999999999999999999999999999999999999999999887 8887754 23433 3467
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
.++||+||++|.+++++++.+.+. ++.|+|+|++|++..+..|++++++||+++.+++++++|+.+++++
T Consensus 91 ~iiid~sT~~p~~~~~~~~~~~~~----------g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~l~~~g~~i 160 (297)
T 4gbj_A 91 GVHVSMSTISPETSRQLAQVHEWY----------GAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGV 160 (297)
T ss_dssp CEEEECSCCCHHHHHHHHHHHHHT----------TCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHHHHTTCSEE
T ss_pred eEEEECCCCChHHHHHHHHHHHhc----------CCceecCCcCCCccccccccceeecccchhHHHHHHHHHHHhhCCe
Confidence 899999999999999999998752 3899999999999999999999999999999999999999999999
Q ss_pred EeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCC
Q 022170 161 IYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 239 (301)
Q Consensus 161 ~~~g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (301)
+|+|+ +|.|+.+|+++|++.+.++++++|++.+++++|+|+++++++++.+++.||.++.+.+ .+.+++|.+
T Consensus 161 ~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~p 233 (297)
T 4gbj_A 161 FDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIFQNYGK-------LVASNTYEP 233 (297)
T ss_dssp EECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHHHHHHHH-------HHHHTCCCS
T ss_pred EEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCchhhccCc-------cccCCCCCC
Confidence 99985 8999999999999999999999999999999999999999999999999998776533 356789986
Q ss_pred -CcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhCC
Q 022170 240 -GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 297 (301)
Q Consensus 240 -~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 297 (301)
+|+++++.||++++.+++++.|+|+|+++.+.++|+++.++|+|++||+++++.+++.
T Consensus 234 ~~f~~~l~~KDl~l~~~~A~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~sal~~~~~~~ 292 (297)
T 4gbj_A 234 VAFRFPLGLKDINLTLQTASDVNAPMPFADIIRNRFISGLAKGRENLDWGALALGASDD 292 (297)
T ss_dssp CSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999998753
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-48 Score=342.27 Aligned_cols=278 Identities=30% Similarity=0.421 Sum_probs=255.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||.+|+++||+|++|||++++++.+.+.|+..++++.++++++|+||+|||++.+ +++++++.+++++. ..++
T Consensus 32 mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~-~~~v~~~~~~l~~~--l~~g 108 (310)
T 3doj_A 32 MGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCA-ALSVVFDKGGVLEQ--ICEG 108 (310)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHH-HHHHHHSTTCGGGG--CCTT
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHH-HHHHHhCchhhhhc--cCCC
Confidence 79999999999999999999999999999999999999999999999999999998877 89998655555554 3467
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||+.|.+.+++.+.+.+. +++|+++|+++++..+..|++++++||+++.+++++++|+.++.++
T Consensus 109 ~~vv~~st~~~~~~~~~~~~~~~~----------g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~g~~~ 178 (310)
T 3doj_A 109 KGYIDMSTVDAETSLKINEAITGK----------GGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRS 178 (310)
T ss_dssp CEEEECSCCCHHHHHHHHHHHHHT----------TCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEE
T ss_pred CEEEECCCCCHHHHHHHHHHHHHc----------CCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhCCCE
Confidence 899999999999999999888652 3789999999999999999999999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++|+.|.++.+|+++|++.+.++++++|++.++++.|+|++++.++++.+++.+|.++++.+ .+++++|.++
T Consensus 179 ~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~ 251 (310)
T 3doj_A 179 FYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGP-------SMNKSSYPPA 251 (310)
T ss_dssp EECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTCCHHHHHHHH-------HHHTTCCCCS
T ss_pred EEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhh-------hhhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999998888877654422 3457899999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhCCC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 298 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 298 (301)
|+++++.||++++.+++++.|+++|+++.++++|+++.++|+|+.||+++++++++.+
T Consensus 252 f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 309 (310)
T 3doj_A 252 FPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVKFSR 309 (310)
T ss_dssp SBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHCCC
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999998765
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-47 Score=333.87 Aligned_cols=275 Identities=31% Similarity=0.458 Sum_probs=252.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||.+|+++||+|++|||++++.+.+.+.|+..+++++++++++|+||+|||++.+ +++++.+.+++.+. ..++
T Consensus 12 mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~-~~~v~~~~~~l~~~--l~~g 88 (287)
T 3pdu_A 12 MGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAA-AREVCFGANGVLEG--IGGG 88 (287)
T ss_dssp THHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHH-HHHHHHSTTCGGGT--CCTT
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHH-HHHHHcCchhhhhc--ccCC
Confidence 89999999999999999999999999999988999999999999999999999998766 89998655455553 3467
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||+.|.+.+++.+.+.+. +++|+++|+++++..+..|++++++||+++.+++++++|+.+++++
T Consensus 89 ~~vv~~st~~~~~~~~~~~~~~~~----------g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~ 158 (287)
T 3pdu_A 89 RGYIDMSTVDDETSTAIGAAVTAR----------GGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKC 158 (287)
T ss_dssp CEEEECSCCCHHHHHHHHHHHHHT----------TCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEE
T ss_pred CEEEECCCCCHHHHHHHHHHHHHc----------CCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCE
Confidence 899999999999999999887642 3799999999999999999999999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++|+.|.++.+|+++|++.+.++++++|++.++++.|+|++++.++++.+++.||.++.+.+ .+.+++|.++
T Consensus 159 ~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~ 231 (287)
T 3pdu_A 159 LHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQ-------MLLSGEFPTS 231 (287)
T ss_dssp EECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHH-------HHHHTCCCCS
T ss_pred EEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccChHHHhhcc-------ccccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999888887665432 3456889899
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHh
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 295 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 295 (301)
|+++++.||++++.+++++.|+++|+++.++++|+++.++|+|++||++++++++
T Consensus 232 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pdu_A 232 FPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286 (287)
T ss_dssp SBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999886
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-47 Score=338.00 Aligned_cols=277 Identities=26% Similarity=0.413 Sum_probs=252.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||.+|+++||+|++|||++++.+.+.+.|+..+++++++++++|+||+|||++.. +++++.+. ++++. ..++
T Consensus 42 mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~-~~~v~~~~-~~~~~--l~~~ 117 (320)
T 4dll_A 42 MGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAV-VQDVLFAQ-GVAAA--MKPG 117 (320)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHH-HHHHHTTT-CHHHH--CCTT
T ss_pred HHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHH-HHHHHcch-hHHhh--CCCC
Confidence 89999999999999999999999999999999999999999999999999999998777 88888743 44443 2467
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
++|||+||+.|.+++++.+.+.+. +++|+++|+++++..+..|++++++||+++++++++++|+.+ +++
T Consensus 118 ~~vi~~st~~~~~~~~~~~~~~~~----------g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~-~~~ 186 (320)
T 4dll_A 118 SLFLDMASITPREARDHAARLGAL----------GIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVF-GRA 186 (320)
T ss_dssp CEEEECSCCCHHHHHHHHHHHHHT----------TCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHHHHH-EEE
T ss_pred CEEEecCCCCHHHHHHHHHHHHHc----------CCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHHHhc-CCE
Confidence 899999999999999999887652 379999999999999999999999999999999999999999 899
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++|+.|.|+.+|+++|++.+.++++++|++.++++.|+|+++++++++.+++.||.++.+.+ ++++++|.++
T Consensus 187 ~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~-------~~l~~~~~~g 259 (320)
T 4dll_A 187 THVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQ-------RMVERDFAPR 259 (320)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTTCBHHHHTHHH-------HHHTTCCCCS
T ss_pred EEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccccCHHHHHhhh-------hhccCCCCCc
Confidence 999999999999999999999999999999999999999999999999998888887665432 3567899999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhCCCC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKD 299 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~ 299 (301)
|+++++.||++++.+++++.|+++|+++.+.++|+++.++|+|+.||+++++++++...
T Consensus 260 f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~ 318 (320)
T 4dll_A 260 ARLSIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRNG 318 (320)
T ss_dssp SBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTTTTSBGGGHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999987543
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-47 Score=332.92 Aligned_cols=276 Identities=31% Similarity=0.464 Sum_probs=252.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||.+|+++||+|++|||++++.+.+.+.|+..+++++++++++|+||+|||++.+ +++++.+.+++.+. ..++
T Consensus 12 mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~-~~~v~~~~~~l~~~--l~~~ 88 (287)
T 3pef_A 12 MGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAA-AEEVCFGKHGVLEG--IGEG 88 (287)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHH-HHHHHHSTTCHHHH--CCTT
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHH-HHHHHcCcchHhhc--CCCC
Confidence 79999999999999999999999999999999999999999999999999999998777 89998554445543 2467
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||+.|.+.+++.+.+.+. +++|+++|+++++..+..+++++++||+++.+++++++|+.++.++
T Consensus 89 ~~vi~~st~~~~~~~~~~~~~~~~----------g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~ 158 (287)
T 3pef_A 89 RGYVDMSTVDPATSQRIGVAVVAK----------GGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKI 158 (287)
T ss_dssp CEEEECSCCCHHHHHHHHHHHHHT----------TCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEE
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHh----------CCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCe
Confidence 899999999999999999887652 3789999999999999999999999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++|+.|.++.+|+++|++.+.++++++|++.++++.|+|++++.++++.+++.+|.++.+.+ .+.+++|.++
T Consensus 159 ~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~ 231 (287)
T 3pef_A 159 IHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGG-------LIRDRNFAPA 231 (287)
T ss_dssp EECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHH-------HHHTTCCCCS
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhh-------hhhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999999888887665422 3456889999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
|+++++.||++++.+++++.|+++|+++.++++|+++.++|+|+.||+++++++++
T Consensus 232 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 287 (287)
T 3pef_A 232 FPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYER 287 (287)
T ss_dssp SBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGGCC
T ss_pred CchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999998753
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=333.89 Aligned_cols=277 Identities=26% Similarity=0.384 Sum_probs=249.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-CCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-KETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||++||.+|+++||+|++|||++++++.+.+.|... ++++.++++++|+||+|||++.. +++++.+.+++.+. ..+
T Consensus 18 mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~-~~~v~~~~~~l~~~--l~~ 94 (303)
T 3g0o_A 18 MGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQ-VRQVLFGEDGVAHL--MKP 94 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHH-HHHHHC--CCCGGG--SCT
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHH-HHHHHhChhhHHhh--CCC
Confidence 799999999999999999999999999999999887 88999999999999999998777 89988544445543 346
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCC
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN 159 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~ 159 (301)
++++||+||+.|.+.+++.+.+.+ . ++.|+++|+++++..+..|++++++||+++.+++++++|+.++++
T Consensus 95 g~ivv~~st~~~~~~~~~~~~~~~------~----g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~ 164 (303)
T 3g0o_A 95 GSAVMVSSTISSADAQEIAAALTA------L----NLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASN 164 (303)
T ss_dssp TCEEEECSCCCHHHHHHHHHHHHT------T----TCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHHHHHHHHHEEE
T ss_pred CCEEEecCCCCHHHHHHHHHHHHH------c----CCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHHHHHHHHHCCC
Confidence 789999999999999999988764 2 378999999999999999999999999999999999999999999
Q ss_pred eEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCC
Q 022170 160 TIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYG 238 (301)
Q Consensus 160 ~~~~g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (301)
++++|+ +|.++.+|+++|++.+.++++++|++.++++.|+|++++.++++.+++.+|.++++.+ .++.++|.
T Consensus 165 ~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~ 237 (303)
T 3g0o_A 165 VYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQ-------HVVDGDYT 237 (303)
T ss_dssp EEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHH-------HHHTTCCC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHHHhhhH-------HHhcCCCC
Confidence 999998 9999999999999999999999999999999999999999999998888887665432 24567898
Q ss_pred CCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhCC
Q 022170 239 GGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 297 (301)
Q Consensus 239 ~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 297 (301)
++|+++++.||++++.+++++.|+++|+++.++++|+++.++|+|++||++++++++++
T Consensus 238 ~~~~~~~~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 296 (303)
T 3g0o_A 238 PRSAVDIFVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGE 296 (303)
T ss_dssp CSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGC---
T ss_pred CCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999988765
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-43 Score=307.69 Aligned_cols=258 Identities=26% Similarity=0.327 Sum_probs=232.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||.+|+++||+|++|||++++.+.+.+.|+..+++++++++ +|+||+|||++.+ +++++.+ +.+. ..++
T Consensus 26 mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~-~~~v~~~---l~~~--l~~g 98 (296)
T 3qha_A 26 MGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQ-VREVVGE---LAGH--AKPG 98 (296)
T ss_dssp THHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHH-HHHHHHH---HHTT--CCTT
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHH-HHHHHHH---HHHh--cCCC
Confidence 899999999999999999999999999999999999999999999 9999999998776 8888844 3332 2467
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||+.|.+.+++.+.+.+. +++|+++|+++++..+..+++++++||+++.+++++++|+.++.++
T Consensus 99 ~ivv~~st~~~~~~~~~~~~~~~~----------g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~ 168 (296)
T 3qha_A 99 TVIAIHSTISDTTAVELARDLKAR----------DIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVV 168 (296)
T ss_dssp CEEEECSCCCHHHHHHHHHHHGGG----------TCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHHHHEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHc----------CCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHHHHcCCe
Confidence 899999999999999999888642 3799999999999999999999999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH------HHHHhhcCCCccccccCCCCCCcccCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL------TKILNSSSARCWSSDSYNPVPGVMEGVPAS 234 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (301)
+++|+.|.++.+|+++|++.+.++++++|++.++++.|+|++++ +++++.+++.||..+ .+ ++++
T Consensus 169 ~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~----~~-----~~~~ 239 (296)
T 3qha_A 169 IHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRD----NM-----KDLE 239 (296)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGGCCCS----SC-----SCCC
T ss_pred EEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccCHHhh----ch-----hhhh
Confidence 99999999999999999999999999999999999999999999 999998887776543 22 2445
Q ss_pred CCCCCCcch-----hhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCC
Q 022170 235 RNYGGGFAS-----KLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 285 (301)
Q Consensus 235 ~~~~~~~~~-----~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~ 285 (301)
+ |.++|.+ +++.||++++.+++++.|+++|+++.++++|+.+.+.|++++
T Consensus 240 ~-~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~ 294 (296)
T 3qha_A 240 P-DNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEK 294 (296)
T ss_dssp T-TSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTCCC---
T ss_pred c-CCCCCchhhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCcccc
Confidence 6 8889999 999999999999999999999999999999999999999654
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=319.05 Aligned_cols=274 Identities=15% Similarity=0.180 Sum_probs=238.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||.+|.++||+|++|||++++.+.+.+.|+..++++.++++++|+||+|||++.+ +++++.. +.+.. ..++
T Consensus 20 mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~-~~~v~~~-~~l~~---~~~g 94 (306)
T 3l6d_A 20 MGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHA-THEVLGM-PGVAR---ALAH 94 (306)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHH-HHHHHTS-TTHHH---HTTT
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHH-HHHHhcc-cchhh---ccCC
Confidence 79999999999999999999999999999988998889999999999999999998877 8888852 22321 2367
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||++|.+++++.+.+.+ . +++|+++|++++++....+.+++++||+++.+++++++|+.++.++
T Consensus 95 ~ivid~st~~~~~~~~l~~~~~~------~----g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~ll~~lg~~~ 164 (306)
T 3l6d_A 95 RTIVDYTTNAQDEGLALQGLVNQ------A----GGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHT 164 (306)
T ss_dssp CEEEECCCCCTTHHHHHHHHHHH------T----TCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHHHHTTCSEE
T ss_pred CEEEECCCCCHHHHHHHHHHHHH------c----CCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHHHHHhcCCE
Confidence 89999999999999999988764 2 3799999999998888777889999999999999999999998899
Q ss_pred Eee--CC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC--CCccccccCCCCCCcccCCCCCC
Q 022170 161 IYC--GG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS--ARCWSSDSYNPVPGVMEGVPASR 235 (301)
Q Consensus 161 ~~~--g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 235 (301)
+++ |+ +|.++.+| .+.+.++++++|++.++++.|+|+++++++++.+. +.+|.+..+.| .++++
T Consensus 165 ~~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~ 233 (306)
T 3l6d_A 165 VFLPWDEALAFATVLH----AHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVR-------RLETQ 233 (306)
T ss_dssp EECCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHT
T ss_pred EEecCCCCccHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHH-------HHhcC
Confidence 999 97 89999999 45567889999999999999999999999999875 56776654432 34578
Q ss_pred CCCCC-cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhCCCCC
Q 022170 236 NYGGG-FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 300 (301)
Q Consensus 236 ~~~~~-~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 300 (301)
+|.++ |+++++.||++++.+++++.|+++|+++++.++|+++.++|+|++||+++++++++...|
T Consensus 234 ~~~~~~~~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~~~~~~ 299 (306)
T 3l6d_A 234 DFKGDQARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFAREQEE 299 (306)
T ss_dssp CCCTTSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGGC-----
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhHHhc
Confidence 89875 789999999999999999999999999999999999999999999999999998876543
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-41 Score=295.80 Aligned_cols=286 Identities=51% Similarity=0.834 Sum_probs=253.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.++|.+|.++||+|++|||++++.+.+.+.|+..+.++.++++++|+||+|+|.+.. +++++.+.+++++. ..++
T Consensus 11 mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~-~~~v~~~~~~~~~~--l~~~ 87 (296)
T 2gf2_A 11 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSIN-AIEAYSGANGILKK--VKKG 87 (296)
T ss_dssp THHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHH-HHHHHHSTTSGGGT--CCTT
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHH-HHHHHhCchhHHhc--CCCC
Confidence 89999999999999999999999999999988888888999999999999999998777 88888765555443 2456
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++|++|+++|.+.+++.+.+.+ . +..|+++|+++++..+..+++.+++|++++.+++++++|+.++.++
T Consensus 88 ~~vv~~s~~~~~~~~~~~~~~~~------~----g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~ 157 (296)
T 2gf2_A 88 SLLIDSSTIDPAVSKELAKEVEK------M----GAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNV 157 (296)
T ss_dssp CEEEECSCCCHHHHHHHHHHHHH------T----TCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHHTTTEEEE
T ss_pred CEEEECCCCCHHHHHHHHHHHHH------c----CCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHHHHHcCCe
Confidence 79999999999999888877654 1 2689999999998888889889999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++++.|.+..+|+++|.+.+.++.+++|++.++++.|++++++.+++..+.+.+|......+.+.+....+..++|.++
T Consensus 158 ~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g 237 (296)
T 2gf2_A 158 VYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGG 237 (296)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSS
T ss_pred EEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccchhccCCCCC
Confidence 99999999999999999999999999999999999999999999999998777777665555555555444566889899
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhCCCC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKD 299 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~ 299 (301)
|.++.+.||++.+.++++++|+++|+.+.++++|+.+.++|+|++||+++++++++.+|
T Consensus 238 ~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~ 296 (296)
T 2gf2_A 238 FGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREEET 296 (296)
T ss_dssp SBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCTTSBGGGHHHHHSCCCC
T ss_pred CchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999876643
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=281.52 Aligned_cols=276 Identities=36% Similarity=0.530 Sum_probs=241.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..++.+|.++||+|++|||++++.+.+.+.|+..+.++.++++++|+||+|+|++.+ +++++...+.+.+. ..++
T Consensus 16 ~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~-~~~~~~~~~~l~~~--l~~~ 92 (299)
T 1vpd_A 16 MGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPH-VKEVALGENGIIEG--AKPG 92 (299)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHH-HHHHHHSTTCHHHH--CCTT
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHH-HHHHHhCcchHhhc--CCCC
Confidence 89999999999999999999999999999988988888999999999999999998776 88888432233332 2356
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++|++|+..|.+.+++.+.+.+ . ++.|+++|+++++..+..+++.+++||+++.++.++++|+.++.++
T Consensus 93 ~~vv~~s~~~~~~~~~l~~~~~~------~----g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g~~~ 162 (299)
T 1vpd_A 93 TVLIDMSSIAPLASREISDALKA------K----GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV 162 (299)
T ss_dssp CEEEECSCCCHHHHHHHHHHHHT------T----TCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEE
T ss_pred CEEEECCCCCHHHHHHHHHHHHH------c----CCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHHHHHHHcCCe
Confidence 79999999999988899888764 1 3789999999998888888889999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++++.|.+..+|+++|.+.+.++.+++|++.++++.|++++++.+++..+...++.+.... + .++.++|.++
T Consensus 163 ~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~--~-----~~l~~~~~~g 235 (299)
T 1vpd_A 163 VHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKA--P-----MVMDRNFKPG 235 (299)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHH--H-----HHHTTCCCCS
T ss_pred EEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCCHHHHHhh--h-----HhhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999988765555433221 1 2345678788
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
|.++...||++.+.++++++|+++|+.+.++++|+++.++|+|+.||+++++++++
T Consensus 236 ~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 291 (299)
T 1vpd_A 236 FRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEK 291 (299)
T ss_dssp SBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998864
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=273.91 Aligned_cols=277 Identities=35% Similarity=0.522 Sum_probs=241.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..++.+|.+.||+|++|||++++.+.+.+.|+..+.++.++++++|+||+|+|.+.+ +++++.+.+.+.+. ..++
T Consensus 15 ~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~-~~~v~~~~~~l~~~--l~~~ 91 (301)
T 3cky_A 15 MGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGI-VETVMNGPGGVLSA--CKAG 91 (301)
T ss_dssp THHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHH-HHHHHHSTTCHHHH--SCTT
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHH-HHHHHcCcchHhhc--CCCC
Confidence 89999999999999999999999999999888888888999999999999999998777 88888532233332 2356
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++|++++..|.+.+++.+.+.+ . +++|+++|+++++..+..|+++++++|+++.++.++++|+.++.++
T Consensus 92 ~~vv~~~~~~~~~~~~l~~~~~~------~----g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~ 161 (301)
T 3cky_A 92 TVIVDMSSVSPSSTLKMAKVAAE------K----GIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDI 161 (301)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHH------T----TCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEE
T ss_pred CEEEECCCCCHHHHHHHHHHHHH------c----CCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCE
Confidence 89999999999888888888764 1 2789999999998888888888899999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++++.|.+..+|+++|.+....+.++.|++.++++.|++++++.+++..+...++.+....+. .++.++|.++
T Consensus 162 ~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~g 235 (301)
T 3cky_A 162 YHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEK------FIMSGDFAGG 235 (301)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHHCCC------CCCTCCCSSS
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhhh------hhhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999876555543322110 2346788889
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
|.++.+.||++.++++++++|+++|+.++++++++++.+.|+|+.||+++++++++
T Consensus 236 ~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 291 (301)
T 3cky_A 236 FAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQ 291 (301)
T ss_dssp SBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998864
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=286.23 Aligned_cols=262 Identities=15% Similarity=0.226 Sum_probs=219.4
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCCh-------hhHHHHHhCCCCCCC-CHHHHHhcCCEEEEecCCCccchhhhhcCCCcc
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNC-------NVMKMFSDMGVPTKE-TPFEVAEASDVVITMLPSSSHQVLDVYNGPNGL 71 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~-------~~~~~l~~~g~~~~~-s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~ 71 (301)
||++||.+|+++| |+|++|||++ +..+.+.+.|+ ++ ++.+++++||+||+|||++.. .+++.+ +
T Consensus 35 mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~--~~~~~~---i 107 (317)
T 4ezb_A 35 AAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAAT--KAVAAS---A 107 (317)
T ss_dssp HHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGH--HHHHHH---H
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHH--HHHHHH---H
Confidence 7999999999999 9999999998 56667777787 66 899999999999999997764 444433 3
Q ss_pred ccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHH
Q 022170 72 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 151 (301)
Q Consensus 72 l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ 151 (301)
.+. ..++++|||+||+.|.+.+++.+.+.+ . ++.|+++|++|+ ..+..+++++++||+++ +++++
T Consensus 108 ~~~--l~~~~ivv~~st~~p~~~~~~~~~l~~------~----g~~~~d~pv~g~-~~a~~g~l~i~vgg~~~--~~~~~ 172 (317)
T 4ezb_A 108 APH--LSDEAVFIDLNSVGPDTKALAAGAIAT------G----KGSFVEGAVMAR-VPPYAEKVPILVAGRRA--VEVAE 172 (317)
T ss_dssp GGG--CCTTCEEEECCSCCHHHHHHHHHHHHT------S----SCEEEEEEECSC-STTTGGGSEEEEESTTH--HHHHH
T ss_pred Hhh--cCCCCEEEECCCCCHHHHHHHHHHHHH------c----CCeEEeccCCCC-chhhcCCEEEEEeCChH--HHHHH
Confidence 332 246789999999999999999998864 2 378999999995 45667888999999877 89999
Q ss_pred HHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCccccccCCCCCCccc
Q 022170 152 LFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGVME 229 (301)
Q Consensus 152 ll~~~~~~~~~~g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 229 (301)
+|+.++.+++++|+ +|.|+.+|+++|++.++++++++|++.++++.|+|++ +++.+..+. +.+| ..+.
T Consensus 173 ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~-~~~~l~~~~~~~~~--~~~~------- 242 (317)
T 4ezb_A 173 RLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTER-ILDSVQETFPGLDW--RDVA------- 242 (317)
T ss_dssp HHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCH--HHHH-------
T ss_pred HHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhcCccccH--HHhh-------
Confidence 99999999999998 8999999999999999999999999999999999995 566666554 2233 1111
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHH----HHHHHHCCCC-CCchHHHHHHHhCC
Q 022170 230 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI----YAKLCENGHD-SKDFSCVFQHYYGG 297 (301)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~----~~~a~~~g~g-~~d~~~~~~~~~~~ 297 (301)
.++++++|.++|. +.||++++.+++++.|+++|+++++.++ |+++.+.|++ ++||+++++.++..
T Consensus 243 ~~~~~~~~~~g~~---~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~ 312 (317)
T 4ezb_A 243 DYYLSRTFEHGAR---RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLSVNDGYRGFVPVLARR 312 (317)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTTSSCCTTSHHHHHHHHHHHH
T ss_pred hhhhcCCCCCCcc---hHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHhh
Confidence 1244677777776 4899999999999999999999999999 8888889997 99999999998643
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=273.76 Aligned_cols=275 Identities=32% Similarity=0.490 Sum_probs=241.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||+.+|.+|.+.||+|++|| ++++.+.+.+.|+..+.++.++++++|+||+|+|++.+ +++++.+.+.+.+. ..++
T Consensus 14 ~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~-~~~v~~~~~~l~~~--l~~~ 89 (295)
T 1yb4_A 14 MGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQ-VEDVLFGEHGCAKT--SLQG 89 (295)
T ss_dssp THHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHH-HHHHHHSTTSSTTS--CCTT
T ss_pred HHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHH-HHHHHhCchhHhhc--CCCC
Confidence 89999999999999999999 99999999888888888999999999999999998876 78888632234332 2467
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
++||++|+..|.+.+++.+.+.+ . +++|+++|+++++..+..+.+++++||+++.+++++++|+.++.++
T Consensus 90 ~~vv~~s~~~~~~~~~l~~~~~~------~----g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~ll~~~g~~~ 159 (295)
T 1yb4_A 90 KTIVDMSSISPIETKRFAQRVNE------M----GADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNI 159 (295)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHT------T----TEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEE
T ss_pred CEEEECCCCCHHHHHHHHHHHHH------c----CCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCE
Confidence 89999999999999899888764 1 3789999999988888888888999999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++++.|.+..+|+++|.+...++.++.|++.++++.|++++++.+++..+...++.+... .+.+..++|.++
T Consensus 160 ~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~-------~~~~~~~~~~~g 232 (295)
T 1yb4_A 160 TLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVH-------GERMINRTFEPG 232 (295)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSSCBHHHHHH-------HHHHHTTCCCCS
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHh-------hHHHhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999998876555543321 112345788889
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
|+...+.||++.+++++++.|+++|+.++++++++++.+.|+|+.||+++++++++
T Consensus 233 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (295)
T 1yb4_A 233 FKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALEL 288 (295)
T ss_dssp SBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998864
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=276.06 Aligned_cols=275 Identities=28% Similarity=0.434 Sum_probs=241.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.++|.+|.+.||+|++|||++++.+.+.+.|+..+.++.++++++|+||+|+|++.. +++++....++++. ..++
T Consensus 41 mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~-~~~v~~~~~~~~~~--l~~~ 117 (316)
T 2uyy_A 41 MGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKA-AKDLVLGPSGVLQG--IRPG 117 (316)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHH-HHHHHHSTTCGGGG--CCTT
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHH-HHHHHcCchhHhhc--CCCC
Confidence 79999999999999999999999999999888888888999999999999999997777 88888765444433 2457
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
++||++||+.|.+.+++.+.+.. . +..|+++|+++++.....+++.++++|+++.+++++++|+.++.++
T Consensus 118 ~~vv~~s~~~~~~~~~l~~~~~~------~----~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~ 187 (316)
T 2uyy_A 118 KCYVDMSTVDADTVTELAQVIVS------R----GGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTS 187 (316)
T ss_dssp CEEEECSCCCHHHHHHHHHHHHH------T----TCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEE
T ss_pred CEEEECCCCCHHHHHHHHHHHHH------c----CCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHHHHHhcCCE
Confidence 89999999999999999887753 1 2689999999999888889888889999999999999999999999
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++|+++.+...|++.|.+....+.++.|++.++++.|++++++.+++..+...++.+.... + .++.++|.++
T Consensus 188 ~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~~~s~~~~~~~--~-----~~l~~~~~~g 260 (316)
T 2uyy_A 188 FFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKC--Q-----NILQGNFKPD 260 (316)
T ss_dssp EECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHH--H-----HHHHTCCCCS
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhh--H-----HhhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999998765555433221 1 1345678889
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHh
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 295 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 295 (301)
|+++.+.||++.+++++++.|+++|+.++++++++++.+.|+|++||++++++++
T Consensus 261 ~~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~g~~d~~~~~~~~~ 315 (316)
T 2uyy_A 261 FYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYI 315 (316)
T ss_dssp SBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGTC
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998654
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=277.04 Aligned_cols=254 Identities=19% Similarity=0.209 Sum_probs=215.2
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCC--hhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVN--CNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~--~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||.+||.+|+++|| +|++|||+ +++.+.+.+.|+..++++.++++++|+||+|||++.. .+++.+ +.+. .
T Consensus 35 mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~--~~~~~~---l~~~--l 107 (312)
T 3qsg_A 35 AASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAA--LEVAQQ---AGPH--L 107 (312)
T ss_dssp HHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTH--HHHHHH---HGGG--C
T ss_pred HHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhH--HHHHHh---hHhh--c
Confidence 79999999999999 99999997 5888888888999999999999999999999997764 455543 3332 2
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcC
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG 157 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~ 157 (301)
.++++|||+||+.|.+.+++.+.+.+. ..| .+|+++|+++++.. ..+++++++||+++ ++++++|+.++
T Consensus 108 ~~~~ivvd~st~~~~~~~~~~~~~~~~----~~g----~~~vd~pv~g~~~~-~~g~l~i~vgg~~~--~~~~~ll~~~g 176 (312)
T 3qsg_A 108 CEGALYADFTSCSPAVKRAIGDVISRH----RPS----AQYAAVAVMSAVKP-HGHRVPLVVDGDGA--RRFQAAFTLYG 176 (312)
T ss_dssp CTTCEEEECCCCCHHHHHHHHHHHHHH----CTT----CEEEEEEECSCSTT-TGGGSEEEEESTTH--HHHHHHHHTTT
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHhh----cCC----CeEEeccccCCchh-hcCCEEEEecCChH--HHHHHHHHHhC
Confidence 357899999999999999999887642 112 79999999997654 47888999999887 89999999999
Q ss_pred CCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCC
Q 022170 158 KNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRN 236 (301)
Q Consensus 158 ~~~~~~g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (301)
.+++++|+ +|.++.+|+++|++.+.++.+++|++.++++.|+|+ ++++.++.+.+ ++....+.+ .+++++
T Consensus 177 ~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~-~~~~~l~~~~~-~~~~~~~~~-------~~~~~~ 247 (312)
T 3qsg_A 177 CRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLAD-RVLASLDASFP-EHHLRDLAL-------YLVERN 247 (312)
T ss_dssp CEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHSG-GGTHHHHHH-------HHHHHH
T ss_pred CCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHhcCC-chhHHHhhh-------HhhcCC
Confidence 99999998 899999999999999999999999999999999999 57788887652 333222211 245677
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCC
Q 022170 237 YGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 284 (301)
Q Consensus 237 ~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~ 284 (301)
|.++|++ .||++++.+++++.|+++|+++++.++|+++.+.|+++
T Consensus 248 ~~~g~~~---~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~~~~~g~~~ 292 (312)
T 3qsg_A 248 LEHADRR---AHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAAL 292 (312)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcccch---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhcCCcc
Confidence 8777775 79999999999999999999999999999999988766
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=267.44 Aligned_cols=271 Identities=27% Similarity=0.399 Sum_probs=234.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|.+|.+ ||+|++|||++++.+.+.+.|+..++ +.+++.++|+||+|+|++.. +++++.+....+ .++
T Consensus 12 ~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~-~~~v~~~l~~~l-----~~~ 83 (289)
T 2cvz_A 12 MGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTRE-VYEVAEALYPYL-----REG 83 (289)
T ss_dssp THHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHH-HHHHHHHHTTTC-----CTT
T ss_pred HHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHH-HHHHHHHHHhhC-----CCC
Confidence 89999999999 99999999999999988877777666 77888899999999998766 777774432222 357
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++|++|+..+.+.+++.+.+.+ . +..|+++|+++++..+..|+++++++++++.++.++++| .++.++
T Consensus 84 ~~vv~~s~~~~~~~~~l~~~~~~------~----g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~~g~~~ 152 (289)
T 2cvz_A 84 TYWVDATSGEPEASRRLAERLRE------K----GVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKV 152 (289)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHT------T----TEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEE
T ss_pred CEEEECCCCCHHHHHHHHHHHHH------c----CCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-hhcCCe
Confidence 89999999999999999888764 1 268999999998888888888888999999999999999 999888
Q ss_pred EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022170 161 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 240 (301)
Q Consensus 161 ~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
+++++.+.+..+|+++|.+...++.+++|++.++++.|++++++.+++..+...++.+.... + ..++.++|.++
T Consensus 153 ~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~--~----~~~l~~~~~~g 226 (289)
T 2cvz_A 153 VHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLI--P----QRVLTRAFPKT 226 (289)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTH--H----HHTTTSCCCCS
T ss_pred EEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCCHHHHHhc--c----chhhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999988765554433221 1 01346778889
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 241 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 241 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
|+++...||++.+.++++++|+++|+.++++++++++.+.|+|+.||+++++.+++
T Consensus 227 ~~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~~~~d~~~~~~~~~~ 282 (289)
T 2cvz_A 227 FALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLER 282 (289)
T ss_dssp SBHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998864
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=264.25 Aligned_cols=263 Identities=21% Similarity=0.308 Sum_probs=216.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcC---CEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEAS---DVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~a---diVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||.+||.+|+++||+|++|||++++++.+.+.|+..+.+++++++.+ |+||+|||++ . +++++.+. .+. .
T Consensus 33 mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~-v~~vl~~l---~~~--l 105 (358)
T 4e21_A 33 MGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-V-VDSMLQRM---TPL--L 105 (358)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-G-HHHHHHHH---GGG--C
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-H-HHHHHHHH---Hhh--C
Confidence 79999999999999999999999999999999999999999999999 9999999987 6 89988653 332 2
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcC
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG 157 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~ 157 (301)
.++.+|||+||+.|.+++++.+.+.+ . +++|+++|++|++..+..|+ ++++||+++++++++++|+.++
T Consensus 106 ~~g~iiId~st~~~~~~~~~~~~l~~------~----g~~~vdapVsGg~~~a~~G~-~im~GG~~~a~~~~~~ll~~lg 174 (358)
T 4e21_A 106 AANDIVIDGGNSHYQDDIRRADQMRA------Q----GITYVDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTLA 174 (358)
T ss_dssp CTTCEEEECSSCCHHHHHHHHHHHHT------T----TCEEEEEEEECGGGHHHHCC-EEEEESCHHHHHHTHHHHHHHS
T ss_pred CCCCEEEeCCCCChHHHHHHHHHHHH------C----CCEEEeCCCCCCHHHHhcCC-eeeecCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999988864 2 38999999999999999998 9999999999999999999999
Q ss_pred --------------------CCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------------------
Q 022170 158 --------------------KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL-------------------- 197 (301)
Q Consensus 158 --------------------~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~-------------------- 197 (301)
.+++++|+.|+|+.+|+++|.+.+..+.+++|++.++++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~ 254 (358)
T 4e21_A 175 PGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPD 254 (358)
T ss_dssp CCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--------------CGG
T ss_pred cccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccch
Confidence 5789999999999999999999999999999999999998
Q ss_pred ----CCCHHHHHHHHhhcC-CCccccccCCCCCCcccCCCCCCCCCCCc-chhhHHHH---HHHHHHHHHHcCCCchHHH
Q 022170 198 ----GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGF-ASKLMAKD---LNLALASAKEVGVDCPLTS 268 (301)
Q Consensus 198 ----G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kd---~~~~~~~a~~~g~~~p~~~ 268 (301)
|+|.++++++++.|+ ..||+++.... .+ .++ +.+ .+....|| .++++..|.+.|+|+|.+.
T Consensus 255 ~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~---~~-----~~~--p~~~~~~~~~~d~g~~r~~~~~A~~~gvp~p~~~ 324 (358)
T 4e21_A 255 FYRYDLDLADITEVWRRGSVISSWLLDLSAT---AL-----LDS--PDLQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLS 324 (358)
T ss_dssp GCCCCCCHHHHHHHHTTTSTTCBHHHHHHHH---HH-----HHC--TTCTTC--CCCCCSHHHHHHHHHHHHTCCCHHHH
T ss_pred hcccCCCHHHHHHHHhCccHHHHHHHHHHHH---HH-----hhC--CChHHHHHHHHhcCcHHHHHHHHHHcCCChHHHH
Confidence 899999999999887 68888764311 11 111 111 01112222 3779999999999999998
Q ss_pred HHHHHHHHHHHCCCCCCchHH-HHHHHh
Q 022170 269 QAQDIYAKLCENGHDSKDFSC-VFQHYY 295 (301)
Q Consensus 269 ~~~~~~~~a~~~g~g~~d~~~-~~~~~~ 295 (301)
++ +|.+... .++.+++. ++...+
T Consensus 325 ~a--l~~~~~s--~~~~~~~~~l~~a~r 348 (358)
T 4e21_A 325 SA--LYERFSS--RGEDDFANRLLSAMR 348 (358)
T ss_dssp HH--HHHHHHH--TTTTHHHHHHHHHHC
T ss_pred HH--HHHHHHH--CCCcccHHHHHHHHH
Confidence 75 4444444 35566653 665543
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=271.09 Aligned_cols=253 Identities=17% Similarity=0.234 Sum_probs=208.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC---C--CCCCHHHHHh---cCCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV---P--TKETPFEVAE---ASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~---~--~~~s~~e~~~---~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||.+||.+|+++||+|++|||++++++.+.+.+. . .+.+++++++ .+|+||+|||++.. +++++.+..+.+
T Consensus 15 MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~-v~~vl~~l~~~L 93 (484)
T 4gwg_A 15 MGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQA-VDDFIEKLVPLL 93 (484)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHH-HHHHHHHHGGGC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHH-HHHHHHHHHHhc
Confidence 8999999999999999999999999999987632 2 3689999987 49999999998766 888886533332
Q ss_pred cCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHH
Q 022170 73 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 152 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 152 (301)
.++.+|||+||+.|.+++++.+.+.+ . +++|+++|++|++..+..|+ .+|+||+++++++++++
T Consensus 94 -----~~g~iIId~st~~~~~t~~~~~~l~~------~----Gi~fvd~pVsGg~~gA~~G~-~im~GG~~ea~~~v~pl 157 (484)
T 4gwg_A 94 -----DTGDIIIDGGNSEYRDTTRRCRDLKA------K----GILFVGSGVSGGEEGARYGP-SLMPGGNKEAWPHIKTI 157 (484)
T ss_dssp -----CTTCEEEECSCCCHHHHHHHHHHHHH------T----TCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHH
T ss_pred -----CCCCEEEEcCCCCchHHHHHHHHHHh------h----ccccccCCccCCHHHHhcCC-eeecCCCHHHHHHHHHH
Confidence 46789999999999999999888764 2 38999999999999999999 99999999999999999
Q ss_pred HHhcCCCe-------EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---hhcCCCccccccC
Q 022170 153 FLSMGKNT-------IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKIL---NSSSARCWSSDSY 221 (301)
Q Consensus 153 l~~~~~~~-------~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~-~G~~~~~~~~~~---~~~~~~~~~~~~~ 221 (301)
|+.++.++ +++|+.|+|+.+|+++|.+.++++++++|++.++++ .|+|++++.+++ +.|.+.||++++.
T Consensus 158 l~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~~w~~G~~~S~l~e~~ 237 (484)
T 4gwg_A 158 FQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEIT 237 (484)
T ss_dssp HHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHH
T ss_pred HHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCccchHHHHH
Confidence 99999887 899999999999999999999999999999999999 999999998885 6788889887755
Q ss_pred CCCCCcccCCCCCCCCCCCcchhhHHH-----HH-HHHHHHHHHcCCCch-HHHHHHHHHHHH
Q 022170 222 NPVPGVMEGVPASRNYGGGFASKLMAK-----DL-NLALASAKEVGVDCP-LTSQAQDIYAKL 277 (301)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~k-----d~-~~~~~~a~~~g~~~p-~~~~~~~~~~~a 277 (301)
.+ .+..+|+++++.++.... +. ......|.++|+|+| +.+++...+.++
T Consensus 238 ~~-------~l~~~D~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S~ 293 (484)
T 4gwg_A 238 AN-------ILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSS 293 (484)
T ss_dssp HH-------HHHCBCTTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HH-------HHhcCCccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHhh
Confidence 32 122345554455554432 22 345667889999999 555566777665
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=264.88 Aligned_cols=253 Identities=18% Similarity=0.227 Sum_probs=216.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----CCCCCCCCHHHHHhc---CCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----MGVPTKETPFEVAEA---SDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----~g~~~~~s~~e~~~~---adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||++||.+|+++||+|++|||++++++.+.+ .|+..+.+++++++. +|+||+|||++.. +++++.+..+.+
T Consensus 21 MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~-v~~vl~~l~~~l 99 (497)
T 2p4q_A 21 MGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAP-VDALINQIVPLL 99 (497)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHH-HHHHHHHHGGGC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHH-HHHHHHHHHHhC
Confidence 8999999999999999999999999999987 578888899999887 9999999998766 899986543333
Q ss_pred cCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHH
Q 022170 73 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 152 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 152 (301)
.++++|||+||..|.+++++.+.+.+ . +++|+++|+++++..+..|+ .+++||+++.+++++++
T Consensus 100 -----~~g~iIId~s~~~~~~~~~l~~~l~~------~----g~~~v~~pVsgg~~~a~~G~-~im~gg~~e~~~~v~~l 163 (497)
T 2p4q_A 100 -----EKGDIIIDGGNSHFPDSNRRYEELKK------K----GILFVGSGVSGGEEGARYGP-SLMPGGSEEAWPHIKNI 163 (497)
T ss_dssp -----CTTCEEEECSCCCHHHHHHHHHHHHH------T----TCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHH
T ss_pred -----CCCCEEEECCCCChhHHHHHHHHHHH------c----CCceeCCCcccChhHhhcCC-eEEecCCHHHHHHHHHH
Confidence 35789999999999999998888764 1 27899999999999999999 89999999999999999
Q ss_pred HHhcCCC------eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCCccccccCC
Q 022170 153 FLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---SSSARCWSSDSYN 222 (301)
Q Consensus 153 l~~~~~~------~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~-~G~~~~~~~~~~~---~~~~~~~~~~~~~ 222 (301)
|+.++.+ ++++|+.|.++.+|+++|.+.+..+++++|++.++++ +|++++++.+++. .+...|+.++++.
T Consensus 164 l~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~ 243 (497)
T 2p4q_A 164 FQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITR 243 (497)
T ss_dssp HHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHH
T ss_pred HHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHH
Confidence 9999987 7899999999999999999999999999999999999 6999999998884 5767777766542
Q ss_pred CCCCcccCCCCCCCCCCCcchhhHH-----HHHH-HHHHHHHHcCCCchHHHHHH-HHHHHH
Q 022170 223 PVPGVMEGVPASRNYGGGFASKLMA-----KDLN-LALASAKEVGVDCPLTSQAQ-DIYAKL 277 (301)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~-----kd~~-~~~~~a~~~g~~~p~~~~~~-~~~~~a 277 (301)
+ .+..+||+++|.++... ||.. ...+.+++.|+++|++..+. ..+...
T Consensus 244 ~-------~l~~~d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~av~ar~~s~ 298 (497)
T 2p4q_A 244 D-------ILKFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSA 298 (497)
T ss_dssp H-------HHTCBCTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred H-------HHhcCCCCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHHHHHHHhhc
Confidence 2 13456776668888777 7875 78999999999999998853 444433
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=255.69 Aligned_cols=250 Identities=14% Similarity=0.172 Sum_probs=201.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------------------CCCCCCCHHHHHhcCCEEEEecCCCcc-
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------------GVPTKETPFEVAEASDVVITMLPSSSH- 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------------g~~~~~s~~e~~~~adiVi~~vp~~~~- 59 (301)
||++||.+|+++||+|++|||++++++.+++. ++.+++++++++++||+||+|||++..
T Consensus 19 vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvvii~Vptp~~~ 98 (446)
T 4a7p_A 19 VGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAVFIAVGTPSRR 98 (446)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEEEECCCCCBCT
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEEEEEcCCCCcc
Confidence 79999999999999999999999999988763 145678999999999999999998852
Q ss_pred --------chhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhh
Q 022170 60 --------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE 131 (301)
Q Consensus 60 --------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~ 131 (301)
.+++++.+ +.+. ..++++||++||+.|.+++++.+.+.+.+ ...++.++.+|.+..+..+.
T Consensus 99 ~~~~~Dl~~v~~v~~~---i~~~--l~~g~iVV~~STv~pgtt~~l~~~l~e~~------~~~d~~v~~~Pe~a~eG~a~ 167 (446)
T 4a7p_A 99 GDGHADLSYVFAAARE---IAEN--LTKPSVIVTKSTVPVGTGDEVERIIAEVA------PNSGAKVVSNPEFLREGAAI 167 (446)
T ss_dssp TTCCBCTHHHHHHHHH---HHHS--CCSCCEEEECSCCCTTHHHHHHHHHHHHS------TTSCCEEEECCCCCCTTSHH
T ss_pred ccCCccHHHHHHHHHH---HHHh--cCCCCEEEEeCCCCchHHHHHHHHHHHhC------CCCCceEEeCcccccccchh
Confidence 16777754 3333 24678999999999999999999887531 11346778888776665442
Q ss_pred c--cce-EEEecCC-HHHHHHHHHHHHhcCCC---eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 022170 132 A--GTL-TFMVGGS-EDAYQAAKPLFLSMGKN---TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 204 (301)
Q Consensus 132 ~--g~l-~~~~gg~-~~~~~~~~~ll~~~~~~---~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~ 204 (301)
. ... .+++|++ ++++++++++|+.+..+ ++++++++.|+++|+++|++.++++++++|+..+|++.|+|++++
T Consensus 168 ~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~GiD~~~v 247 (446)
T 4a7p_A 168 EDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLCEQVGADVQEV 247 (446)
T ss_dssp HHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred hhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 1 111 5788885 88999999999998875 688899999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022170 205 TKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 277 (301)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 277 (301)
+++++.++.-++ ..+ ...++|...++.||+.++...|++.|+++|+++++.++.+.-
T Consensus 248 ~~~~~~~~rig~--~~l--------------~pg~G~gg~c~~KD~~~l~~~A~~~g~~~~l~~~~~~iN~~~ 304 (446)
T 4a7p_A 248 SRGIGMDNRIGG--KFL--------------HAGPGYGGSCFPKDTLALMKTAADNETPLRIVEATVQVNDAR 304 (446)
T ss_dssp HHHHHTSTTC-----CC--------------CCCSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCC--ccC--------------CCCCCcchhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999997641111 011 113468899999999999999999999999999999887553
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=251.72 Aligned_cols=252 Identities=14% Similarity=0.104 Sum_probs=201.1
Q ss_pred CcHHHHHHHHhC-CC-eEEEEcCChh----hHHHHHhC---------------------C-CCCCCCHHHHHhcCCEEEE
Q 022170 1 MGFRMASNLMKA-GY-KMAVHDVNCN----VMKMFSDM---------------------G-VPTKETPFEVAEASDVVIT 52 (301)
Q Consensus 1 mG~~lA~~L~~~-G~-~V~~~dr~~~----~~~~l~~~---------------------g-~~~~~s~~e~~~~adiVi~ 52 (301)
||++||.+|+++ || +|++|||+++ +++.+++. | +.++++ .+++++||+||+
T Consensus 29 mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~ea~~~aDvVii 107 (478)
T 3g79_A 29 VGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-FSRISELDAVTL 107 (478)
T ss_dssp THHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-GGGGGGCSEEEE
T ss_pred HHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-HHHHhcCCEEEE
Confidence 899999999999 99 9999999999 88888652 2 233344 678899999999
Q ss_pred ecCCCc--------cchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCC--CCCceEEecc
Q 022170 53 MLPSSS--------HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS--WENPVMLDAP 122 (301)
Q Consensus 53 ~vp~~~--------~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~p 122 (301)
|||++. + +..+....+++.+. ..++++||++||+.|.+++++.+.+.+. ..|. ..++.++++|
T Consensus 108 aVptp~~~~~~~~~d-l~~v~~~~~~i~~~--l~~g~iVV~~STv~pgtt~~v~~~ile~----~~g~~~~~d~~v~~~P 180 (478)
T 3g79_A 108 AIQTPFANPKDLEPD-FSALIDGIRNVGKY--LKPGMLVVLESTITPGTTEGMAKQILEE----ESGLKAGEDFALAHAP 180 (478)
T ss_dssp CCCCCCCSSCCSSCC-CHHHHHHHHHHHHH--CCTTCEEEECSCCCTTTTTTHHHHHHHH----HHCCCBTTTBEEEECC
T ss_pred ecCCchhccCCcccc-HHHHHHHHHHHHhh--cCCCcEEEEeCCCChHHHHHHHHHHHHH----hcCCCcCCceeEEeCC
Confidence 999873 3 44444433445443 2467899999999999999998755411 0121 1247899999
Q ss_pred cCCCHHHhhccce---EEEecCCHHHHHHHHHHHHhc-CCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022170 123 VSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG 198 (301)
Q Consensus 123 v~g~~~~a~~g~l---~~~~gg~~~~~~~~~~ll~~~-~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G 198 (301)
.+..+..+..+++ .+++|++++.+++++++|+.+ +.+++++++++.|+++|+++|++.++++++++|+..+|++.|
T Consensus 181 e~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~G 260 (478)
T 3g79_A 181 ERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAAINQLALYCEAMG 260 (478)
T ss_dssp CCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9988877665544 678888999999999999999 788999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHcCCC-------chHHHH
Q 022170 199 ISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASAKEVGVD-------CPLTSQ 269 (301)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~-------~p~~~~ 269 (301)
+|+++++++++.+. ..+ +..+.|.|+ |...|+.||+.++...+++.|++ ++++++
T Consensus 261 iD~~~v~~~~~~~~----~~r------------i~~~~~~PG~G~GG~c~~KD~~~l~~~a~~~g~~~~~~~~~~~li~~ 324 (478)
T 3g79_A 261 INVYDVRTGVDSLK----GEG------------ITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGELDYPEGADSIYVL 324 (478)
T ss_dssp CCHHHHHHHHHTSC----CSS------------SCCCCCCCCSCCCSSHHHHHHHHHHHHHTTSSCCCCCCSSCCCHHHH
T ss_pred CCHHHHHHHHCCCc----hhh------------hccccCCCCCCcchhhHHHHHHHHHHHHHHcCCCcccccchhHHHHH
Confidence 99999999998652 111 112344554 56789999999999999999987 899999
Q ss_pred HHHHHHH
Q 022170 270 AQDIYAK 276 (301)
Q Consensus 270 ~~~~~~~ 276 (301)
+.++.+.
T Consensus 325 ~~~iN~~ 331 (478)
T 3g79_A 325 ARKVNDF 331 (478)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877543
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.5e-32 Score=253.31 Aligned_cols=246 Identities=19% Similarity=0.270 Sum_probs=207.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----CCCCCCCHHHHHhc---CCEEEEecCCCccchhhhhcCCCcccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVPTKETPFEVAEA---SDVVITMLPSSSHQVLDVYNGPNGLLQ 73 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g~~~~~s~~e~~~~---adiVi~~vp~~~~~~~~v~~~~~~~l~ 73 (301)
||++||.+|+++||+|++|||++++++.+.+. |+..+.++++++++ +|+||+|||++.. +++++.+..+.+
T Consensus 26 MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~-v~~vl~~l~~~l- 103 (480)
T 2zyd_A 26 MGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAG-TDAAIDSLKPYL- 103 (480)
T ss_dssp HHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSH-HHHHHHHHGGGC-
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHH-HHHHHHHHHhhc-
Confidence 89999999999999999999999999998875 77788899999887 9999999998766 899986543333
Q ss_pred CCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHH
Q 022170 74 GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 153 (301)
Q Consensus 74 ~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 153 (301)
.++.+|||+|+..|..++++.+.+.+ . ++.|+++|+++++..+..|. .+++||+++.++.++++|
T Consensus 104 ----~~g~iIId~s~g~~~~t~~l~~~l~~------~----g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll 168 (480)
T 2zyd_A 104 ----DKGDIIIDGGNTFFQDTIRRNRELSA------E----GFNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPIL 168 (480)
T ss_dssp ----CTTCEEEECSCCCHHHHHHHHHHHHH------T----TCEEEEEEEESHHHHHHHCC-EEEEESCHHHHHHHHHHH
T ss_pred ----CCCCEEEECCCCCHHHHHHHHHHHHH------C----CCCeeCCccccCHhHHhcCC-eEEecCCHHHHHHHHHHH
Confidence 35689999999999998888887764 1 27899999999999999999 899999999999999999
Q ss_pred HhcCCC-------eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---hhcCCCccccccCC
Q 022170 154 LSMGKN-------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKIL---NSSSARCWSSDSYN 222 (301)
Q Consensus 154 ~~~~~~-------~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~-~G~~~~~~~~~~---~~~~~~~~~~~~~~ 222 (301)
+.++.+ +.++|+.|.+..+|+++|.+.+..+++++|++.++++ .|++++++.+++ +.+...|++.....
T Consensus 169 ~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~ 248 (480)
T 2zyd_A 169 TKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITK 248 (480)
T ss_dssp HHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHH
T ss_pred HHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 999987 7899999999999999999999999999999999999 699999999888 44656666554332
Q ss_pred CCCCcccCCCCCCCCCCCcchhhHH-----HHH-HHHHHHHHHcCCCchHHHHH
Q 022170 223 PVPGVMEGVPASRNYGGGFASKLMA-----KDL-NLALASAKEVGVDCPLTSQA 270 (301)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~-----kd~-~~~~~~a~~~g~~~p~~~~~ 270 (301)
+ .+.++||.++|.++... |+. ..+.+.+++.|+++|+++.+
T Consensus 249 ~-------~l~~~d~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~a 295 (480)
T 2zyd_A 249 D-------IFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITES 295 (480)
T ss_dssp H-------HHHCBCTTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHH
T ss_pred H-------HHhcCCCCCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHH
Confidence 2 12245665567777655 443 47889999999999999986
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=246.84 Aligned_cols=252 Identities=17% Similarity=0.180 Sum_probs=199.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------------------CCCCCCCHHHHHhcCCEEEEecCCCc--
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------------GVPTKETPFEVAEASDVVITMLPSSS-- 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------------g~~~~~s~~e~~~~adiVi~~vp~~~-- 58 (301)
||.++|.+|+++||+|++|||++++++.+++. ++..++++++++++||+||+|||++.
T Consensus 13 vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvViiaVptp~~~ 92 (450)
T 3gg2_A 13 VGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADIIFIAVGTPAGE 92 (450)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEEEECCCCCBCT
T ss_pred HHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEEEEEcCCCccc
Confidence 79999999999999999999999999888762 13456789999999999999999874
Q ss_pred -------cchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhh
Q 022170 59 -------HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE 131 (301)
Q Consensus 59 -------~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~ 131 (301)
. +++++.+....+ .++++||++||+.|.+++++.+.+.+.+.. .+...++.++.+|.+..+..+.
T Consensus 93 ~~~~dl~~-v~~v~~~i~~~l-----~~g~iVV~~STv~pgt~~~l~~~l~~~~~~--~~~~~d~~v~~~Pe~a~eG~~~ 164 (450)
T 3gg2_A 93 DGSADMSY-VLDAARSIGRAM-----SRYILIVTKSTVPVGSYRLIRKAIQEELDK--REVLIDFDIASNPEFLKEGNAI 164 (450)
T ss_dssp TSSBCCHH-HHHHHHHHHHHC-----CSCEEEEECSCCCTTHHHHHHHHHHHHHHH--TTCCCCEEEEECCCCCCTTSHH
T ss_pred CCCcChHH-HHHHHHHHHhhC-----CCCCEEEEeeeCCCcchHHHHHHHHHhccc--cCcCcceeEEechhhhcccchh
Confidence 4 777775433322 467899999999999999999887653210 0111235667777766554332
Q ss_pred ----ccceEEEecC-CHHHHHHHHHHHHhcCC--CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 022170 132 ----AGTLTFMVGG-SEDAYQAAKPLFLSMGK--NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 204 (301)
Q Consensus 132 ----~g~l~~~~gg-~~~~~~~~~~ll~~~~~--~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~ 204 (301)
..+ .+++|| +++++++++++|+.+.. .++++++++.++.+|+++|++.++++++++|+..+|++.|+|++++
T Consensus 165 ~~~~~p~-~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v 243 (450)
T 3gg2_A 165 DDFMKPD-RVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVANLCERVGADVSMV 243 (450)
T ss_dssp HHHHSCS-CEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred hhccCCC-EEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 122 577787 58999999999999876 3678889999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022170 205 TKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 277 (301)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 277 (301)
+++++.++. +....+.| .++|...++.||+.++...|++.|+++|+++++.++.+.-
T Consensus 244 ~~~~~~~~r--ig~~~~~p--------------g~G~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~iN~~~ 300 (450)
T 3gg2_A 244 RLGIGSDSR--IGSKFLYP--------------GCGYGGSCFPKDVKALIRTAEDNGYRMEVLEAVERVNEKQ 300 (450)
T ss_dssp HHHHHTSTT--TCSSSCCC--------------SSCCCSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCC--CCcccCCC--------------CCCCCcccHHhhHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 999987641 11111111 2357889999999999999999999999999999887643
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=244.03 Aligned_cols=247 Identities=18% Similarity=0.202 Sum_probs=184.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCC-CHHHH---------------HhcCCEEEEecCCCcc-----
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE-TPFEV---------------AEASDVVITMLPSSSH----- 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~-s~~e~---------------~~~adiVi~~vp~~~~----- 59 (301)
||++||.+|+++||+|++|||++++++.+++.+..... .+++. +++||+||+|||++..
T Consensus 22 vGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvii~VpTp~~~~~~~ 101 (431)
T 3ojo_A 22 IGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFIIAVPTPNNDDQYR 101 (431)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEEECCCCCBCSSSSC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEEEEeCCCccccccC
Confidence 89999999999999999999999999999874322211 11211 3479999999999862
Q ss_pred --chhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCC--CCCceEEecccCCCHHHhhccce
Q 022170 60 --QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS--WENPVMLDAPVSGGVLAAEAGTL 135 (301)
Q Consensus 60 --~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~pv~g~~~~a~~g~l 135 (301)
.+..|....+++.+. ..++++||++||+.|.+++++.+.+.+. .|. -.++.++++|.+..+..+..+.+
T Consensus 102 ~~Dl~~V~~~~~~i~~~--l~~g~iVV~~STV~pgtt~~v~~~i~e~-----~g~~~~~d~~v~~~Pe~~~~G~A~~~~~ 174 (431)
T 3ojo_A 102 SCDISLVMRALDSILPF--LKKGNTIIVESTIAPKTMDDFVKPVIEN-----LGFTIGEDIYLVHCPERVLPGKILEELV 174 (431)
T ss_dssp BBCCHHHHHHHHHHGGG--CCTTEEEEECSCCCTTHHHHTHHHHHHT-----TTCCBTTTEEEEECCCCCCTTSHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCCEEEEecCCChhHHHHHHHHHHHH-----cCCCcCCCeEEEECCCcCCCcchhhccc
Confidence 023344433445554 3467899999999999999998876441 121 13478999999988776665543
Q ss_pred ---EEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 136 ---TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 136 ---~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
.+++|++++++++++++|+.++.++++++++++|+++|+++|++.++++++++|+..+|++.|+|+++++++++...
T Consensus 175 ~p~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~ 254 (431)
T 3ojo_A 175 HNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMANKHP 254 (431)
T ss_dssp HSCEEEEESSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTST
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCC
Confidence 67888899999999999999998888999999999999999999999999999999999999999999999998764
Q ss_pred CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 022170 213 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA 275 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 275 (301)
.- ..+.|+ ++|...|+.||..++...+++.+ ++++++.++-+
T Consensus 255 ri----~~l~pG--------------~G~GG~C~pkD~~~L~~~a~~~~---~li~~~~~iN~ 296 (431)
T 3ojo_A 255 RV----NIHQPG--------------PGVGGHCLAVDPYFIIAKDPENA---KLIQTGREINN 296 (431)
T ss_dssp TC----CCCCCC--------------SCCCCCCBCSCC---------CC---HHHHHHHHHHH
T ss_pred Cc----ccCCCC--------------CCccccchhhhHHHHHHHHHHHh---HHHHHHHHHHH
Confidence 21 112221 24667788889888888888876 77777776543
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=244.03 Aligned_cols=253 Identities=17% Similarity=0.220 Sum_probs=211.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----CCCCCCCCHHHHHh---cCCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----MGVPTKETPFEVAE---ASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----~g~~~~~s~~e~~~---~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||++||.+|+++||+|++|||++++++.+.+ .|+..+.+++++++ ++|+||+|||++.. +++++.+....+
T Consensus 13 mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~-v~~vl~~l~~~l 91 (482)
T 2pgd_A 13 MGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQA-VDNFIEKLVPLL 91 (482)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHH-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHH-HHHHHHHHHhhc
Confidence 8999999999999999999999999999987 67777889999875 89999999998766 888886533333
Q ss_pred cCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHH
Q 022170 73 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 152 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 152 (301)
.++++|||+++..+..++++.+.+.+ . +++|+++|+++++..+..|+ .+++||+++.++.++++
T Consensus 92 -----~~g~iII~~s~~~~~~~~~l~~~l~~------~----g~~~v~~pv~g~~~~a~~g~-~i~~gg~~e~~~~v~~l 155 (482)
T 2pgd_A 92 -----DIGDIIIDGGNSEYRDTMRRCRDLKD------K----GILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAI 155 (482)
T ss_dssp -----CTTCEEEECSCCCHHHHHHHHHHHHH------T----TCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHH
T ss_pred -----CCCCEEEECCCCCHHHHHHHHHHHHH------c----CCeEeCCCCCCChhhhccCC-eEEeCCCHHHHHHHHHH
Confidence 35679999999999988888777754 1 27899999999999999998 78999999999999999
Q ss_pred HHhcCCCe-------EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHh---hcCCCccccccC
Q 022170 153 FLSMGKNT-------IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL-GISASTLTKILN---SSSARCWSSDSY 221 (301)
Q Consensus 153 l~~~~~~~-------~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~-G~~~~~~~~~~~---~~~~~~~~~~~~ 221 (301)
|+.++.++ +++|+.|.++.+|+++|.+.+..+++++|++.++++. |++++++.+++. .+...|+..+..
T Consensus 156 l~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~g~~~S~l~~~~ 235 (482)
T 2pgd_A 156 FQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEIT 235 (482)
T ss_dssp HHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHH
T ss_pred HHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcCCCcCchHHHHH
Confidence 99999876 7888899999999999999999999999999999999 999999999985 455666655543
Q ss_pred CCCCCcccCCCCCCCCCCCcchhhH------HHHHHHHHHHHHHcCCCchHHH-HHHHHHHHH
Q 022170 222 NPVPGVMEGVPASRNYGGGFASKLM------AKDLNLALASAKEVGVDCPLTS-QAQDIYAKL 277 (301)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~------~kd~~~~~~~a~~~g~~~p~~~-~~~~~~~~a 277 (301)
.+ .+..++|++++.++.. .++.+.+.++++++|+|+|++. ++++.+...
T Consensus 236 ~~-------~l~~~d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s~ 291 (482)
T 2pgd_A 236 AS-------ILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSS 291 (482)
T ss_dssp HH-------HHHCBCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred hH-------HhhccCCCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhhh
Confidence 21 1234566666766655 4777899999999999999996 677776554
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=231.57 Aligned_cols=239 Identities=15% Similarity=0.137 Sum_probs=193.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC------------------CCCCCCCHHHHHhcCCEEEEecCCCcc---
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM------------------GVPTKETPFEVAEASDVVITMLPSSSH--- 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~------------------g~~~~~s~~e~~~~adiVi~~vp~~~~--- 59 (301)
||.++|..|++ ||+|++|||++++++.+++. ++.+++++++++++||+||+|||++.+
T Consensus 47 mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDvViiaVPt~~~~~~ 125 (432)
T 3pid_A 47 VGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADYVIIATPTDYDPKT 125 (432)
T ss_dssp HHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSEEEECCCCEEETTT
T ss_pred HHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCEEEEeCCCcccccc
Confidence 79999999998 99999999999999988762 355678899999999999999998731
Q ss_pred ------chhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhcc
Q 022170 60 ------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 133 (301)
Q Consensus 60 ------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g 133 (301)
.+++++.+ +.+ + .++++||++||+.|.+++++.+.+.+ ..+..+|+++++..+..+
T Consensus 126 ~~~Dl~~V~~v~~~---i~~-l--~~g~iVV~~STv~pgtt~~l~~~l~~------------~~v~~sPe~~~~G~A~~~ 187 (432)
T 3pid_A 126 NYFNTSTVEAVIRD---VTE-I--NPNAVMIIKSTIPVGFTRDIKERLGI------------DNVIFSPEFLREGRALYD 187 (432)
T ss_dssp TEEECHHHHHHHHH---HHH-H--CTTSEEEECSCCCTTHHHHHHHHHTC------------CCEEECCCCCCTTSHHHH
T ss_pred ccccHHHHHHHHHH---HHh-c--CCCcEEEEeCCCChHHHHHHHHHHhh------------ccEeecCccCCcchhhhc
Confidence 15555543 332 1 35689999999999999999988753 245669999999998888
Q ss_pred ce---EEEecCCHHHHHHHHHHHHh--cCCC-eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 022170 134 TL---TFMVGGSEDAYQAAKPLFLS--MGKN-TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKI 207 (301)
Q Consensus 134 ~l---~~~~gg~~~~~~~~~~ll~~--~~~~-~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~ 207 (301)
++ .+++||+++.++++.++|.. ++.. .+++++++.|+++|+++|++.++++++++|+..+|++.|+|+++++++
T Consensus 188 ~l~p~rIvvG~~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~GiD~~~v~~~ 267 (432)
T 3pid_A 188 NLHPSRIVIGERSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESQGLNSKQIIEG 267 (432)
T ss_dssp HHSCSCEEESSCSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccCCceEEecCCHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 77 79999999999999999987 4432 466788999999999999999999999999999999999999999999
Q ss_pred HhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022170 208 LNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 276 (301)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 276 (301)
++..+--+. ...+| ..+|...|+.||...+.. +..|++.++++++.++-+.
T Consensus 268 ~~~dprig~--~~~~p--------------g~G~GG~C~pkD~~~L~~--~~~~~~~~li~~~~~~N~~ 318 (432)
T 3pid_A 268 VCLDPRIGN--HYNNP--------------SFGYGGYCLPKDTKQLLA--NYESVPNNIIAAIVDANRT 318 (432)
T ss_dssp HHTSTTTCS--SSCCC--------------CSCCCTTTHHHHHHHHHH--HTTTSCCSHHHHHHHHHHH
T ss_pred HccCCCCCc--ccCCC--------------CCCCcccchhhhHHHHHH--HhcCCchhHHHHHHHHHHh
Confidence 987641100 00111 125677899999998864 4468999999999887543
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=224.51 Aligned_cols=245 Identities=18% Similarity=0.183 Sum_probs=198.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcC--ChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDV--NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr--~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||.+||.+|.++||+|++||| +++..+.+.+.|+. +++.++++++|+||+|||++.. .+.+ . .+.+. .
T Consensus 11 mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~-~~~~-~---~~~~~---~ 80 (264)
T 1i36_A 11 VAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVA-LGAA-R---RAGRH---V 80 (264)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGH-HHHH-H---HHHTT---C
T ss_pred HHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHH-HHHH-H---HHHHh---c
Confidence 799999999999999999999 77888888777776 7788889999999999997654 5444 2 23332 1
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCC
Q 022170 79 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK 158 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~ 158 (301)
++ ++|++||+.|.+.+++.+.+.+ . . |+++|+++++..+..|.+ ++++|+++ +++++ |+.++.
T Consensus 81 ~~-~vi~~s~~~~~~~~~l~~~~~~------~-----g-~~~~~v~~~~~~~~~g~~-~~~~g~~~--~~~~~-l~~~g~ 143 (264)
T 1i36_A 81 RG-IYVDINNISPETVRMASSLIEK------G-----G-FVDAAIMGSVRRKGADIR-IIASGRDA--EEFMK-LNRYGL 143 (264)
T ss_dssp CS-EEEECSCCCHHHHHHHHHHCSS------S-----E-EEEEEECSCHHHHGGGCE-EEEESTTH--HHHHG-GGGGTC
T ss_pred Cc-EEEEccCCCHHHHHHHHHHHhh------C-----C-eeeeeeeCCccccccCCe-EEecCCcH--HHhhh-HHHcCC
Confidence 33 9999999999999888887653 1 2 889999999998888887 88888766 88889 999999
Q ss_pred CeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCC
Q 022170 159 NTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNY 237 (301)
Q Consensus 159 ~~~~~g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (301)
+++++++ .|.+..+|+++|++.+.++.+++|++.++++.|++++ +++.+..+.+.++.. .. + .+.+++|
T Consensus 144 ~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~g~~~~~--~~--~-----~~~~~~~ 213 (264)
T 1i36_A 144 NIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTEGNDFRE--SA--I-----SRLKSSC 213 (264)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTSCSSTHH--HH--H-----HHHHHHH
T ss_pred eeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhcCccHHH--HH--H-----HHhcCCC
Confidence 8899997 8999999999999999999999999999999999997 778887654433331 11 1 1334667
Q ss_pred CCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCc
Q 022170 238 GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 286 (301)
Q Consensus 238 ~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d 286 (301)
.++++ ..||++.+.+++++. +++|+.++++++|+++.+.|++..|
T Consensus 214 ~~g~~---~~~~~~~~~~~a~~~-v~~p~~~~v~~~~~~~~~~~~~~~~ 258 (264)
T 1i36_A 214 IHARR---RYEEMKEVQDMLAEV-IDPVMPTCIIRIFDKLKDVKVSADA 258 (264)
T ss_dssp HTHHH---HHHHHHHHHHHHHTT-SCCSHHHHHHHHHHHHCC------G
T ss_pred Ccchh---hHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHcCCChhh
Confidence 77665 689999999999999 9999999999999999988887665
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=237.48 Aligned_cols=246 Identities=21% Similarity=0.290 Sum_probs=204.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----CCCCCCCHHHHHhc---CCEEEEecCCCccchhhhhcCCCcccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVPTKETPFEVAEA---SDVVITMLPSSSHQVLDVYNGPNGLLQ 73 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g~~~~~s~~e~~~~---adiVi~~vp~~~~~~~~v~~~~~~~l~ 73 (301)
||++||.+|+++||+|++|||++++++.+.+. |+..+.+++++++. +|+||+|||++.. +++++.+....+
T Consensus 16 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~-v~~vl~~l~~~l- 93 (474)
T 2iz1_A 16 MGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAA-TDATIKSLLPLL- 93 (474)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHH-HHHHHHHHGGGC-
T ss_pred HHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchH-HHHHHHHHHhhC-
Confidence 79999999999999999999999999988765 67778899999886 9999999998766 888886433333
Q ss_pred CCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHH
Q 022170 74 GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 153 (301)
Q Consensus 74 ~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 153 (301)
.++++|||+++..+..++++.+.+.+ . +++|+++|+++++..+..|. .+++||+++.++.++++|
T Consensus 94 ----~~g~iiId~s~~~~~~~~~l~~~l~~------~----g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll 158 (474)
T 2iz1_A 94 ----DIGDILIDGGNTHFPDTMRRNAELAD------S----GINFIGTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIF 158 (474)
T ss_dssp ----CTTCEEEECSCCCHHHHHHHHHHTTT------S----SCEEEEEEECSHHHHHHHCC-CEEEEECHHHHHHHHHHH
T ss_pred ----CCCCEEEECCCCCHHHHHHHHHHHHH------C----CCeEECCCCCCChhhhccCC-eEEecCCHHHHHHHHHHH
Confidence 35689999999999988888877653 2 37899999999999888888 788999999999999999
Q ss_pred HhcCCC--------eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCCccccccC
Q 022170 154 LSMGKN--------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---SSSARCWSSDSY 221 (301)
Q Consensus 154 ~~~~~~--------~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~-~G~~~~~~~~~~~---~~~~~~~~~~~~ 221 (301)
+.++.+ +.++|+.|.+..+|+++|.+.+..+.+++|++.++++ .|++++++.+++. .+...|++....
T Consensus 159 ~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~~~ 238 (474)
T 2iz1_A 159 EQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEIT 238 (474)
T ss_dssp HHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHH
T ss_pred HHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccccHHHhh
Confidence 999987 6789999999999999999999999999999999999 7999999998884 354555544322
Q ss_pred CCCCCcccCCCCCCCCCCC-cchhhHH-----HHHH-HHHHHHHHcCCCchHHHHH
Q 022170 222 NPVPGVMEGVPASRNYGGG-FASKLMA-----KDLN-LALASAKEVGVDCPLTSQA 270 (301)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-----kd~~-~~~~~a~~~g~~~p~~~~~ 270 (301)
.+ .+.++||.++ |.++... |+.. ...+.+++.|+++|+++.+
T Consensus 239 ~~-------~l~~~d~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~a 287 (474)
T 2iz1_A 239 KE-------VLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES 287 (474)
T ss_dssp HH-------HTTCBCSSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred hh-------HhhcCCCCCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHH
Confidence 11 1235677665 7777554 6655 7889999999999999986
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=235.92 Aligned_cols=250 Identities=16% Similarity=0.264 Sum_probs=204.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-C-------CCCCCCHHHHHhc---CCEEEEecCCCccchhhhhcCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-G-------VPTKETPFEVAEA---SDVVITMLPSSSHQVLDVYNGPN 69 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g-------~~~~~s~~e~~~~---adiVi~~vp~~~~~~~~v~~~~~ 69 (301)
||++||.+|+++||+|++|||++++++.+.+. | +..+.+++++++. +|+||+|||++.. +++++.+..
T Consensus 12 mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~-v~~vl~~l~ 90 (478)
T 1pgj_A 12 MGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA-TDSTIEQLK 90 (478)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH-HHHHHHHHH
Confidence 79999999999999999999999999988764 5 5667899998874 9999999998766 888885433
Q ss_pred ccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHH
Q 022170 70 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 149 (301)
Q Consensus 70 ~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~ 149 (301)
..+ .++++|||+++..+..++++.+.+.+ . +++|+++|+++++..+..|. .+++||+++.++.+
T Consensus 91 ~~l-----~~g~iIId~sng~~~~~~~l~~~l~~------~----g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v 154 (478)
T 1pgj_A 91 KVF-----EKGDILVDTGNAHFKDQGRRAQQLEA------A----GLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEI 154 (478)
T ss_dssp HHC-----CTTCEEEECCCCCHHHHHHHHHHHHT------T----TCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHH
T ss_pred hhC-----CCCCEEEECCCCChHHHHHHHHHHHH------C----CCeEEEeeccCCHHHHhcCC-eEeccCCHHHHHHH
Confidence 333 35679999999999888888877753 1 37899999999999888888 78899999999999
Q ss_pred HHHHHhcCCC-------eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh----hcCCCcccc
Q 022170 150 KPLFLSMGKN-------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN----SSSARCWSS 218 (301)
Q Consensus 150 ~~ll~~~~~~-------~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~----~~~~~~~~~ 218 (301)
+++|+.++.+ ++++|+.|.++.+|+++|.+.+..+++++|++.++++.|++++++.+++. .+.+.|+..
T Consensus 155 ~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~~s~l~ 234 (478)
T 1pgj_A 155 RPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYML 234 (478)
T ss_dssp HHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHH
T ss_pred HHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCCcCchHH
Confidence 9999999987 78899999999999999999999999999999999999999999999886 566666654
Q ss_pred ccCCCCCCcccCCCCCCCCCCCcchhhHH-----HHH-HHHHHHHHHcCCCchHHHH-HHHHH
Q 022170 219 DSYNPVPGVMEGVPASRNYGGGFASKLMA-----KDL-NLALASAKEVGVDCPLTSQ-AQDIY 274 (301)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----kd~-~~~~~~a~~~g~~~p~~~~-~~~~~ 274 (301)
+...+ .+..+++.+.+.++... |+. +.+.++++++|+|+|++++ ++..+
T Consensus 235 ~~~~~-------~l~~~d~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~av~~r~ 290 (478)
T 1pgj_A 235 DISIA-------AARAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQ 290 (478)
T ss_dssp HHHHH-------HHHCBCTTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred Hhhch-------hhhcCCCCChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 43321 11234552226666555 444 6999999999999999998 44333
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=229.84 Aligned_cols=249 Identities=16% Similarity=0.189 Sum_probs=191.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--------------------CCCCCCHHHHHhcCCEEEEecCCC---
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------------VPTKETPFEVAEASDVVITMLPSS--- 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--------------------~~~~~s~~e~~~~adiVi~~vp~~--- 57 (301)
||+++|.+|+++||+|++|||++++++.+++.+ +.+++++++++++||+||+|||++
T Consensus 19 vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDvviiaVptp~~~ 98 (478)
T 2y0c_A 19 VGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDE 98 (478)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSEEEECCCCCBCT
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCEEEEEeCCCccc
Confidence 799999999999999999999999999988752 245567888899999999999986
Q ss_pred ------ccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCC-CCceEEecccCCCHHHh
Q 022170 58 ------SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW-ENPVMLDAPVSGGVLAA 130 (301)
Q Consensus 58 ------~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~pv~g~~~~a 130 (301)
.. +++++......+ .++++||++||+.|.+++++.+.+.+. +. .|.. ..+.++..|.+..+..+
T Consensus 99 ~~~~dl~~-v~~v~~~i~~~l-----~~~~iVV~~STv~~gt~~~l~~~l~~~-~~--~g~~~~~~~v~~~Pe~~~eG~~ 169 (478)
T 2y0c_A 99 DGSADLQY-VLAAARNIGRYM-----TGFKVIVDKSTVPVGTAERVRAAVAEE-LA--KRGGDQMFSVVSNPEFLKEGAA 169 (478)
T ss_dssp TSSBCCHH-HHHHHHHHHHHC-----CSCEEEEECSCCCTTHHHHHHHHHHHH-HH--HTTCCCCEEEEECCCCCCTTCH
T ss_pred CCCccHHH-HHHHHHHHHHhc-----CCCCEEEEeCCcCCCchHHHHHHHHHH-hc--CCCCCccEEEEEChhhhcccce
Confidence 44 777775433333 357899999999999999988887642 00 1100 12344555555444332
Q ss_pred ----hccceEEEecCC-H----HHHHHHHHHHHhcCC--CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 022170 131 ----EAGTLTFMVGGS-E----DAYQAAKPLFLSMGK--NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGI 199 (301)
Q Consensus 131 ----~~g~l~~~~gg~-~----~~~~~~~~ll~~~~~--~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~ 199 (301)
.... .+++|++ + +.++.++++|+.+.. .++++++++.++..|++.|++.++++++++|+..+|++.|+
T Consensus 170 ~~~~~~p~-~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~la~~~Gi 248 (478)
T 2y0c_A 170 VDDFTRPD-RIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELANLADRFGA 248 (478)
T ss_dssp HHHHHSCS-CEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eeccCCCC-EEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1111 5677775 6 788999999998765 68888899999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022170 200 SASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 277 (301)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 277 (301)
|++++.+.++...- +. .+.|.++ +...+..||+..+.++++++|+++|++++++++++.-
T Consensus 249 d~~~v~~~i~~~~r--ig----------------~~~~~pG~g~gg~c~~kD~~~l~~~A~~~gv~~pl~~~v~~in~~~ 310 (478)
T 2y0c_A 249 DIEAVRRGIGSDPR--IG----------------YHFLYAGCGYGGSCFPKDVEALIRTADEHGQSLQILKAVSSVNATQ 310 (478)
T ss_dssp CHHHHHHHHHTSTT--TC----------------STTCCCSSCCCSSSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCc--cC----------------cccCCCCcccccCcCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Confidence 99999998874320 00 1123333 4456789999999999999999999999999988754
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-28 Score=225.47 Aligned_cols=248 Identities=13% Similarity=0.141 Sum_probs=193.2
Q ss_pred CcHHHHHHHHhC--CCeEEEEcCChhhHHHHHhCC-------------------CCCCCCHHHHHhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMG-------------------VPTKETPFEVAEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~--G~~V~~~dr~~~~~~~l~~~g-------------------~~~~~s~~e~~~~adiVi~~vp~~~~ 59 (301)
||.++|.+|+++ ||+|++|||++++++.+++.+ +.+++++.++++++|+||+|||++..
T Consensus 20 vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDvvii~Vptp~~ 99 (481)
T 2o3j_A 20 VGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADLIFISVNTPTK 99 (481)
T ss_dssp THHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSEEEECCCCCBC
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCEEEEecCCccc
Confidence 899999999998 799999999999999887532 34456778888999999999998641
Q ss_pred -------------chhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhh-chhhhccCCCCCceEEecccCC
Q 022170 60 -------------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN-CILKEKKDSWENPVMLDAPVSG 125 (301)
Q Consensus 60 -------------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~pv~g 125 (301)
.+.+++.+ +.+. ..++++||++||+.|.+++++.+.+.+ .+.. .+ .++.+..+|.+.
T Consensus 100 ~~g~~~~~~~dl~~v~~~~~~---i~~~--l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~--~~--~d~~v~~~Pe~~ 170 (481)
T 2o3j_A 100 MYGRGKGMAPDLKYVESVSRT---IAQY--AGGPKIVVEKSTVPVKAAESIGCILREAQKNN--EN--LKFQVLSNPEFL 170 (481)
T ss_dssp CSSTTTTTSBCCHHHHHHHHH---HHHH--CCSCEEEEECSCCCTTHHHHHHHHHHHHTC--------CCEEEEECCCCC
T ss_pred cccccccCCCcHHHHHHHHHH---HHHh--CCCCCEEEECCCCCCCHHHHHHHHHHHhhCcC--cC--CceEEEeCcccc
Confidence 14455433 3332 245789999999999999999887764 2100 00 124567888887
Q ss_pred CHHHhhccce---EEEecCCH-----HHHHHHHHHHHhcCC-CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022170 126 GVLAAEAGTL---TFMVGGSE-----DAYQAAKPLFLSMGK-NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS 196 (301)
Q Consensus 126 ~~~~a~~g~l---~~~~gg~~-----~~~~~~~~ll~~~~~-~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~ 196 (301)
.+..+..+.+ .+++|++. +++++++++|+.++. .++++++++.++..|+++|++.++++++++|+..+|++
T Consensus 171 ~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~~ia~~nE~~~la~~ 250 (481)
T 2o3j_A 171 AEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVCEA 250 (481)
T ss_dssp CTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665543322 57788854 578899999999986 78889999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCC--CcchhhHHHHHHHHHHHHHHcCCC--chHHHHHHH
Q 022170 197 LGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG--GFASKLMAKDLNLALASAKEVGVD--CPLTSQAQD 272 (301)
Q Consensus 197 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~ 272 (301)
.|+|+++++++++.+.. +. .+.|.+ +|...++.||+.++...|++.|++ +|+++++.+
T Consensus 251 ~Gid~~~v~~~~~~~~r--i~----------------~~~~~pg~g~gg~c~~KD~~~l~~~A~~~g~~~~~~l~~~~~~ 312 (481)
T 2o3j_A 251 TGAEISEVAHAVGYDTR--IG----------------SKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVIN 312 (481)
T ss_dssp HSCCHHHHHHHHHTSTT--TC----------------SSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHccCCC--CC----------------CCCCCCCCccCCccHHHHHHHHHHHHHHcCCCccchHHHHHHH
Confidence 99999999999987631 11 112334 357889999999999999999999 999998876
Q ss_pred HHH
Q 022170 273 IYA 275 (301)
Q Consensus 273 ~~~ 275 (301)
+-+
T Consensus 313 ~N~ 315 (481)
T 2o3j_A 313 INN 315 (481)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-28 Score=226.62 Aligned_cols=242 Identities=14% Similarity=0.165 Sum_probs=185.8
Q ss_pred CcHHHHHHHHhC--CCeEEEEcCChhhHHHHHh-------------------CCCCCCCCHHHHHhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKA--GYKMAVHDVNCNVMKMFSD-------------------MGVPTKETPFEVAEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~--G~~V~~~dr~~~~~~~l~~-------------------~g~~~~~s~~e~~~~adiVi~~vp~~~~ 59 (301)
||.++|.+|+++ ||+|++|||++++++.+++ .++..++++.++++++|+||+|||++..
T Consensus 16 mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDvViiaVptp~~ 95 (467)
T 2q3e_A 16 VGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTK 95 (467)
T ss_dssp THHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSEEEECCCCCBC
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCEEEEEcCCchh
Confidence 899999999999 8999999999999988643 2455567888999999999999998765
Q ss_pred chhhhhc-----------CCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHH
Q 022170 60 QVLDVYN-----------GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL 128 (301)
Q Consensus 60 ~~~~v~~-----------~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~ 128 (301)
.+.++. ..+.+.+. ..++++||++||+.|.+++++.+.+.+. + ..+++.|++++|.
T Consensus 96 -~~~v~~~~~~dl~~v~~~~~~i~~~--l~~g~iVV~~STv~~g~~~~l~~~l~~~------~----~~~~d~~V~~~Pe 162 (467)
T 2q3e_A 96 -TYGMGKGRAADLKYIEACARRIVQN--SNGYKIVTEKSTVPVRAAESIRRIFDAN------T----KPNLNLQVLSNPE 162 (467)
T ss_dssp -CSSTTTTTSBCCHHHHHHHHHHHHT--CCSEEEEEECSCCCTTHHHHHHHHHHHT------C----CTTCEEEEEECCC
T ss_pred -hccccccCCCcHHHHHHHHHHHHhh--CCCCCEEEECCcCCchHHHHHHHHHHHh------C----CCCCCeEEEeCHH
Confidence 433211 01123222 2457899999999999999988877642 1 2234556666666
Q ss_pred HhhccceE--------EEecC-----CHHHHHHHHHHHHhc-CCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022170 129 AAEAGTLT--------FMVGG-----SEDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLG 194 (301)
Q Consensus 129 ~a~~g~l~--------~~~gg-----~~~~~~~~~~ll~~~-~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~ 194 (301)
.+..|... +++|| +++.+++++++|+.+ +..++++++++.++.+|++.|.+.+.++++++|+..+|
T Consensus 163 ~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~ 242 (467)
T 2q3e_A 163 FLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALC 242 (467)
T ss_dssp CCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65666544 77888 778899999999999 66788999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCC--chHHHHHH
Q 022170 195 QSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD--CPLTSQAQ 271 (301)
Q Consensus 195 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~ 271 (301)
++.|+|++++.++++.++. +....+.| .++|...++.||+.++...+++.|++ .++.+++.
T Consensus 243 ~~~Gid~~~v~~~~~~~~~--~~~~~~~p--------------g~g~gg~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~ 305 (467)
T 2q3e_A 243 EATGADVEEVATAIGMDQR--IGNKFLKA--------------SVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVI 305 (467)
T ss_dssp HHHTCCHHHHHHHHHTSTT--TCSSSCCC--------------CSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhCcCHHHHHHHHcCCCC--CCccccCC--------------CCCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 9999999999999987642 11111111 12366788999999999999999986 44444443
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.7e-29 Score=222.57 Aligned_cols=275 Identities=15% Similarity=0.076 Sum_probs=206.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--------------CCCCCCHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
||+++|..|+++||+|++|+|++++++.+++.+ +..++++.++++++|+||+|||.. . +++++.
T Consensus 40 mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp~~-~-~~~vl~ 117 (356)
T 3k96_A 40 WGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVPSF-A-FHEVIT 117 (356)
T ss_dssp HHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCCHH-H-HHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCCHH-H-HHHHHH
Confidence 799999999999999999999999999888754 234578889999999999999954 5 899987
Q ss_pred CCCccccCCCCCCCeEEEEeC-CCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHH
Q 022170 67 GPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 145 (301)
Q Consensus 67 ~~~~~l~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~ 145 (301)
+..+.+ .+++++|+++ ++.+.+ +.+.+.+.+. .++ ..+.++++|.+..+......+..++.+.|++.
T Consensus 118 ~i~~~l-----~~~~ivvs~~kGi~~~t-~~~se~i~~~----l~~--~~~~vlsgP~~a~ev~~g~pt~~via~~~~~~ 185 (356)
T 3k96_A 118 RMKPLI-----DAKTRIAWGTKGLAKGS-RLLHEVVATE----LGQ--VPMAVISGPSLATEVAANLPTAVSLASNNSQF 185 (356)
T ss_dssp HHGGGC-----CTTCEEEECCCSCBTTT-BCHHHHHHHH----HCS--CCEEEEESSCCHHHHHTTCCEEEEEEESCHHH
T ss_pred HHHHhc-----CCCCEEEEEeCCCCcCc-cCHHHHHHHH----cCC--CCEEEEECccHHHHHHcCCCeEEEEecCCHHH
Confidence 655444 2456777775 477776 6666665442 111 23678999999888777777777777789999
Q ss_pred HHHHHHHHHhcCCCeEeeCCc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022170 146 YQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 208 (301)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~g~~-----------------g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 208 (301)
.+.++++|+..+.+++...++ |.+..+|+.+|...+.++++++|+.+++++.|+++++++++.
T Consensus 186 ~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G~~~~t~~gl~ 265 (356)
T 3k96_A 186 SKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTGLA 265 (356)
T ss_dssp HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTT
T ss_pred HHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhCCChHhhcccc
Confidence 999999999888877766552 455667899999999999999999999999999999999776
Q ss_pred hhcC----CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCC
Q 022170 209 NSSS----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 284 (301)
Q Consensus 209 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~ 284 (301)
+.++ +.|+.++|+..+..+..|..++........+.++.++.+.+.++++++|+++|+++++++++. ++
T Consensus 266 g~gDl~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~v~~il~-------~~ 338 (356)
T 3k96_A 266 GLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQVHRILH-------ED 338 (356)
T ss_dssp THHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------SC
T ss_pred hhhHHHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHHHHHHHh-------CC
Confidence 5552 455666666443333222111100000124678999999999999999999999999999885 45
Q ss_pred CchHHHHHHHhC
Q 022170 285 KDFSCVFQHYYG 296 (301)
Q Consensus 285 ~d~~~~~~~~~~ 296 (301)
.+....++.+..
T Consensus 339 ~~~~~~~~~l~~ 350 (356)
T 3k96_A 339 LDPQQAVQELLE 350 (356)
T ss_dssp CCHHHHHHHHHS
T ss_pred CCHHHHHHHHHc
Confidence 555555555543
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=210.64 Aligned_cols=236 Identities=16% Similarity=0.114 Sum_probs=187.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC------------------CCCCCHHHHHhcCCEEEEecCCCc----
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV------------------PTKETPFEVAEASDVVITMLPSSS---- 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~------------------~~~~s~~e~~~~adiVi~~vp~~~---- 58 (301)
||.++|.+|++ ||+|++|||++++++.+++.+. ..++++.++++++|+||+|||++.
T Consensus 11 vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvviiavpt~~~~~~ 89 (402)
T 1dlj_A 11 VGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVIIATPTNYNSRI 89 (402)
T ss_dssp HHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEECCCCCEETTT
T ss_pred HHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEEecCCCcccCC
Confidence 79999999999 9999999999999999987764 345678888899999999999874
Q ss_pred ------cchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhc
Q 022170 59 ------HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 132 (301)
Q Consensus 59 ------~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~ 132 (301)
. +++++..... + .++++||++||+.|.+++++.+.+.+ -.++.+|.+..+..+..
T Consensus 90 ~~~dl~~-v~~v~~~i~~-l-----~~~~iVV~~ST~~~g~~~~l~~~~~~------------~~v~~~Pe~~~~G~a~~ 150 (402)
T 1dlj_A 90 NYFDTQH-VETVIKEVLS-V-----NSHATLIIKSTIPIGFITEMRQKFQT------------DRIIFSPEFLRESKALY 150 (402)
T ss_dssp TEECCHH-HHHHHHHHHH-H-----CSSCEEEECSCCCTTHHHHHHHHTTC------------SCEEECCCCCCTTSTTH
T ss_pred CCccHHH-HHHHHHHHHh-h-----CCCCEEEEeCCCCccHHHHHHHHhCC------------CeEEECCccccCcchhh
Confidence 3 6777654333 3 24679999999999999999877642 25778898887765543
Q ss_pred cce---EEEecCCH-------HHHHHHHHHHHh-cCC-C-eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 022170 133 GTL---TFMVGGSE-------DAYQAAKPLFLS-MGK-N-TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGI 199 (301)
Q Consensus 133 g~l---~~~~gg~~-------~~~~~~~~ll~~-~~~-~-~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~ 199 (301)
+.+ .+++|+++ +.++.+.++|.. ... + ++++++++.++..|++.|++.++++++++|+..+|++.|+
T Consensus 151 ~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gi 230 (402)
T 1dlj_A 151 DNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKL 230 (402)
T ss_dssp HHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333 37888876 666777888865 322 2 5778899999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCC--CcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022170 200 SASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG--GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 276 (301)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 276 (301)
|+++++++++.++. + .+ ..+.+ +|...++.||+.++...++ |+++|+++++.++.+.
T Consensus 231 d~~~v~~~~~~~~r---i----~~-----------~~~~pg~g~gg~c~~kD~~~l~~~a~--~~~~~l~~~~~~~N~~ 289 (402)
T 1dlj_A 231 NSHMIIQGISYDDR---I----GM-----------HYNNPSFGYGGYSLPKDTKQLLANYN--NIPQTLIEAIVSSNNV 289 (402)
T ss_dssp CHHHHHHHHHTSTT---T----CS-----------SSCCCCSSCCSSHHHHHHHHHHHHHT--TSSCSHHHHHHHHHHH
T ss_pred CHHHHHHHhccCCC---C----Cc-----------CCCCCCCccCCccHHhhHHHHHHHhc--CCChHHHHHHHHHHHH
Confidence 99999999987641 1 00 11223 6778899999999998885 8899999999877554
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=215.15 Aligned_cols=250 Identities=13% Similarity=0.106 Sum_probs=188.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-------------------C-CCCCCCHHHHHhcCCEEEEecCCCcc-
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVVITMLPSSSH- 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-------------------g-~~~~~s~~e~~~~adiVi~~vp~~~~- 59 (301)
||.++|.+|+++||+|++|||++++++.+++. | +..+++++++++++|+||+|||++..
T Consensus 11 vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvviiaVptp~~~ 90 (436)
T 1mv8_A 11 VGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKK 90 (436)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEEEECCCCCBCT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEEEEEcCCCccc
Confidence 89999999999999999999999999988763 2 45567888889999999999998652
Q ss_pred -------chhhhhcCCCccccCCCCCC---CeEEEEeCCCCHHH-HHHHHHHHhhchhhhccCCC--CCceEEecccCCC
Q 022170 60 -------QVLDVYNGPNGLLQGGNSVR---PQLLIDSSTIDPQT-SRNISAAVSNCILKEKKDSW--ENPVMLDAPVSGG 126 (301)
Q Consensus 60 -------~~~~v~~~~~~~l~~~~~~~---~~ivid~st~~p~~-~~~~~~~~~~~~~~~~~g~~--~~~~~~~~pv~g~ 126 (301)
.+++++......+ .+ +++||++||+.|.+ .+.+.+.+.+. .+.. .++.....|.+..
T Consensus 91 ~~~~dl~~v~~v~~~i~~~l-----~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~-----~g~~~~~~~~v~~~Pe~~~ 160 (436)
T 1mv8_A 91 NGDLDLGYIETVCREIGFAI-----REKSERHTVVVRSTVLPGTVNNVVIPLIEDC-----SGKKAGVDFGVGTNPEFLR 160 (436)
T ss_dssp TSSBCCHHHHHHHHHHHHHH-----TTCCSCCEEEECSCCCTTHHHHTHHHHHHHH-----HSCCBTTTBEEEECCCCCC
T ss_pred CCCcchHHHHHHHHHHHHHh-----cccCCCcEEEEeCCcCCCchHHHHHHHHHHh-----cCcccCCcEEEEECccccc
Confidence 0355554332222 24 68999999999998 67777766541 0100 1234455565544
Q ss_pred HHHhhc---cceEEEecCC-HHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 022170 127 VLAAEA---GTLTFMVGGS-EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS 202 (301)
Q Consensus 127 ~~~a~~---g~l~~~~gg~-~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~ 202 (301)
+..... ..-.+++|++ ++..+.++++++.++.+++. ++++.++..|++.|.+.+.++++++|+..+|++.|+|++
T Consensus 161 ~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~v~~-~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~ 239 (436)
T 1mv8_A 161 ESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR-KTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGR 239 (436)
T ss_dssp TTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred ccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCCEEc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 432211 1115677775 88999999999999886554 788999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCC--CcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022170 203 TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG--GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 277 (301)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 277 (301)
++.++++... .+. + ..+++.+ +|...+..||+..+.++++++|+++|++++++++.+.-
T Consensus 240 ~v~~~~~~~~--r~~-----~---------~~~~~~pg~g~gg~~~~kD~~~l~~~a~~~g~~~pl~~~v~~in~~~ 300 (436)
T 1mv8_A 240 EVMDVICQDH--KLN-----L---------SRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQ 300 (436)
T ss_dssp HHHHHHTTCT--TTT-----T---------SSTTCSCCSCCCSSSHHHHHHHHHHHHHHTTCCCTTGGGHHHHHHHH
T ss_pred HHHHHhcCCC--CCC-----C---------cccCCCCcccccCcCcHhhHHHHHHHHHHcCCCcHHHHHHHHHHhHh
Confidence 9999987532 010 0 0123333 57778999999999999999999999999999876543
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-24 Score=193.87 Aligned_cols=252 Identities=14% Similarity=0.142 Sum_probs=189.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------------------CCCCCCCHHHHHhcCCEEEEecCCCcc-
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------------GVPTKETPFEVAEASDVVITMLPSSSH- 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------------g~~~~~s~~e~~~~adiVi~~vp~~~~- 59 (301)
||.++|..|++.||+|+++|.|+++++.+++. .+.+++++.++++.+|++|+|||+|..
T Consensus 32 VGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~~~I~VpTP~~~ 111 (444)
T 3vtf_A 32 VGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDATFIAVGTPPAP 111 (444)
T ss_dssp HHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSEEEECCCCCBCT
T ss_pred HHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCceEEEecCCCCC
Confidence 58999999999999999999999999888652 134577889999999999999998742
Q ss_pred -------chhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhc
Q 022170 60 -------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 132 (301)
Q Consensus 60 -------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~ 132 (301)
.+.++.......+.. ..++++||..||+.|.+++++...+.+. . +.-.++.....|.+-.|..+..
T Consensus 112 d~~~Dl~~v~~a~~~I~~~l~~--~~~g~lVV~eSTVppGtte~~~~~~l~~----~-~~~~~f~v~~~PErl~eG~a~~ 184 (444)
T 3vtf_A 112 DGSADLRYVEAAARAVGRGIRA--KGRWHLVVVKSTVPPGTTEGLVARAVAE----E-AGGVKFSVASNPEFLREGSALE 184 (444)
T ss_dssp TSSBCCHHHHHHHHHHHHHHHH--HCSCCEEEECSCCCTTTTTTHHHHHHHT----T-TTTCCCEEEECCCCCCTTSHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHhh--cCCCeEEEEeCCCCCchHHHHHHHHHHH----h-CCCCCceeecCcccccCCcccc
Confidence 133333332222321 1356899999999999999876654331 1 1123467788898766554432
Q ss_pred c---ceEEEecC-CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022170 133 G---TLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 208 (301)
Q Consensus 133 g---~l~~~~gg-~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 208 (301)
. .-.+++|+ ++.+.+.++.+++.+...++.+ ++..|++.|++.|++.+++++++||+..+|++.|+|.+++.+++
T Consensus 185 d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~~~~-~~~~AE~~Kl~eN~~ravnIa~~NEla~ice~~GiDv~eV~~a~ 263 (444)
T 3vtf_A 185 DFFKPDRIVIGAGDERAASFLLDVYKAVDAPKLVM-KPREAELVKYASNVFLALKISFANEVGLLAKRLGVDTYRVFEAV 263 (444)
T ss_dssp HHHSCSCEEEEESSHHHHHHHHHHTTTSCSCEEEE-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ccccCCcEEEcCCCHHHHHHHHHHHhccCCCEEEe-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 2 12355665 6778888999999887666544 56899999999999999999999999999999999999999999
Q ss_pred hhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022170 209 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 276 (301)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 276 (301)
+...--++ ..++| .+||...|+.||...+...+++.|+++++++++.++-+.
T Consensus 264 ~~d~rig~--~~l~P--------------G~G~GG~CipkD~~~L~~~a~~~g~~~~li~a~~~iN~~ 315 (444)
T 3vtf_A 264 GLDKRIGR--HYFGA--------------GLGFGGSCFPKDTLAFIRFGESLGLEMAISKAVLRVNEY 315 (444)
T ss_dssp HTSTTSCS--TTCCC--------------SSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ccCCCCCC--CCCCC--------------CCCCCCcccCcCHHHHHHHHHhcCCCHHHHHhhHHHHHH
Confidence 86531111 11122 235678899999999999999999999999998877553
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-24 Score=190.68 Aligned_cols=265 Identities=14% Similarity=0.133 Sum_probs=181.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC-----------CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-----------VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 69 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g-----------~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~ 69 (301)
||++||.+|+++||+|++|+|++++++.+++.| +..++++.+ +..+|+||+|||+ .+ +++++.+..
T Consensus 25 mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~-~~-~~~v~~~l~ 101 (335)
T 1z82_A 25 WGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV-QY-IREHLLRLP 101 (335)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-GG-HHHHHTTCS
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-HH-HHHHHHHhC
Confidence 799999999999999999999999999998876 355678888 8899999999995 55 899986532
Q ss_pred ccccCCCCCCCeEEEEeC-CCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceE-EEecCCHHHHH
Q 022170 70 GLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT-FMVGGSEDAYQ 147 (301)
Q Consensus 70 ~~l~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~-~~~gg~~~~~~ 147 (301)
+ +++++|+++ ++.+.+.+.+++.+.+. .+ ....++..|.+..... .|... +.+++++ ++
T Consensus 102 ~--------~~~~vv~~~nGi~~~~~~~l~~~~~~~-----~~--~~~~~~~~P~~~~~~~--~g~~~~~~~g~~~--~~ 162 (335)
T 1z82_A 102 V--------KPSMVLNLSKGIEIKTGKRVSEIVEEI-----LG--CPYAVLSGPSHAEEVA--KKLPTAVTLAGEN--SK 162 (335)
T ss_dssp S--------CCSEEEECCCCCCTTTCCCHHHHHHHH-----TC--CCEEEEESSCCHHHHH--TTCCEEEEEEETT--HH
T ss_pred c--------CCCEEEEEeCCCCCCccCcHHHHHHHH-----cC--CceEEEECCccHHHHh--CCCceEEEEEehh--HH
Confidence 1 457899998 67887666777766541 11 1245666776644333 34432 3344433 78
Q ss_pred HHHHHHHhcCCCeEeeCCc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 022170 148 AAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 210 (301)
Q Consensus 148 ~~~~ll~~~~~~~~~~g~~-----------------g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~ 210 (301)
.++++|+..+.++++.+++ |....+|+.+|.+.+.+..++.|+..++++.|++++++.++.+.
T Consensus 163 ~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~l~~~ 242 (335)
T 1z82_A 163 ELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMGLAGI 242 (335)
T ss_dssp HHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTH
T ss_pred HHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhhcccccc
Confidence 8999999988877766653 12233456688888999999999999999999999988664221
Q ss_pred cC----CCccccccCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCC
Q 022170 211 SS----ARCWSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 285 (301)
Q Consensus 211 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~ 285 (301)
+. +.++.++++.....+..++... +. ...+...++.||++.+.+++++.|+++|+.++++++++ ...
T Consensus 243 ~~~~~t~~s~~~~n~~~~~~~~~g~~~~-~~~~~~g~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~-------~~~ 314 (335)
T 1z82_A 243 GDLMVTCNSRYSRNRRFGELIARGFNPL-KLLESSNQVVEGAFTVKAVMKIAKENKIDMPISEEVYRVVY-------EGK 314 (335)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHTCCHH-HHHHTCSSCCTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------SCC
T ss_pred cceeeeccCccCcHHHHHHHHhCCCCHH-HHHHhcCCeeeHHHHHHHHHHHHHHhCCCCcHHHHHHHHHh-------CCC
Confidence 10 1122222110011111110000 00 00133456789999999999999999999999999884 445
Q ss_pred chHHHHHHHh
Q 022170 286 DFSCVFQHYY 295 (301)
Q Consensus 286 d~~~~~~~~~ 295 (301)
+...+++.+.
T Consensus 315 ~~~~~~~~l~ 324 (335)
T 1z82_A 315 PPLQSMRDLM 324 (335)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 6666777664
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.6e-24 Score=192.05 Aligned_cols=262 Identities=14% Similarity=0.103 Sum_probs=176.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--------------CCCCCCHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
||++||.+|+++||+|++|||++++++.+.+.+ +..++++.+++.++|+||+|||+ .. +++++.
T Consensus 26 mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~-~~-~~~v~~ 103 (366)
T 1evy_A 26 FGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-QF-LRGFFE 103 (366)
T ss_dssp HHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-HH-HHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-HH-HHHHHH
Confidence 799999999999999999999999998887643 34456888989999999999995 55 888886
Q ss_pred C----CCccccCCCCCC-CeEEEEeC-CCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEec
Q 022170 67 G----PNGLLQGGNSVR-PQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 140 (301)
Q Consensus 67 ~----~~~~l~~~~~~~-~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~g 140 (301)
+ ....+ .+ ++++|+++ ++.+.+.+.+.+.+.+. .+. ....++.+|.+.........+..++.+
T Consensus 104 ~~~~gl~~~l-----~~~~~ivv~~~~gi~~~~~~~~~~~l~~~-----~~~-~~~~v~~gp~~~~~~~~g~~~~~~~~~ 172 (366)
T 1evy_A 104 KSGGNLIAYA-----KEKQVPVLVCTKGIERSTLKFPAEIIGEF-----LPS-PLLSVLAGPSFAIEVATGVFTCVSIAS 172 (366)
T ss_dssp HHCHHHHHHH-----HHHTCCEEECCCSCCTTTCCCHHHHHTTT-----SCG-GGEEEEESSCCHHHHHTTCCEEEEEEC
T ss_pred HhHHHHHHhc-----CccCCEEEEECCcCCCccccCHHHHHHHH-----CCC-CcEEEEeCCChHHHHHhCCceEEEEec
Confidence 5 33222 23 56888887 77776666666665431 110 013456667665433333344456666
Q ss_pred CCHHHHHHHHHHHHhc--CCCeEeeCCcc---hHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 022170 141 GSEDAYQAAKPLFLSM--GKNTIYCGGAG---NGAA--------------AKICNNLTMAVSMLGVSEALTLGQSLGISA 201 (301)
Q Consensus 141 g~~~~~~~~~~ll~~~--~~~~~~~g~~g---~a~~--------------~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~ 201 (301)
++++.++.++++|+.. +.++++.+++- -+.. +|+.+|.+...+..++.|++.++++.|+++
T Consensus 173 ~~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~la~a~Gi~~ 252 (366)
T 1evy_A 173 ADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDG 252 (366)
T ss_dssp SSHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 7888999999999998 77777666632 2222 345588888999999999999999999998
Q ss_pred HHHHHHHhhcC----CCccccccCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022170 202 STLTKILNSSS----ARCWSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 276 (301)
Q Consensus 202 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 276 (301)
+++.++.+.+. +.++.++++..+..+..++... +. ...+...++.||++.++++++++|+++|+.+.++++++.
T Consensus 253 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~~ 331 (366)
T 1evy_A 253 SAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIE-EIQRTSKAVAEGVATADPLMRLAKQLKVKMPLCHQIYEIVYK 331 (366)
T ss_dssp TTTTSTTTHHHHHHHHTCTTSHHHHHHHHHHTTCCHH-HHHC---CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHS
T ss_pred ccccccccchhheeeecCCCCchHHHHHHHhCCCCHH-HHHHHcCCeeehHHHHHHHHHHHHHhCCCCcHHHHHHHHHHC
Confidence 87654322110 1122222211111111110000 00 011334467899999999999999999999999998863
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.1e-23 Score=178.89 Aligned_cols=239 Identities=11% Similarity=0.120 Sum_probs=161.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-------CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQ 73 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-------g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~ 73 (301)
||.+||.+|+ +||+|++|||++++++++.+. +++.++++++ +++||+||.|+|++.+ ++.++.+. +.
T Consensus 23 MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~-vk~~l~~~---l~ 96 (293)
T 1zej_A 23 MGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLN-TKVEVLRE---VE 96 (293)
T ss_dssp HHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHH-HHHHHHHH---HH
T ss_pred HHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHH-HHHHHHHH---Hh
Confidence 8999999999 999999999999999888776 6777788876 8899999999999987 88777542 22
Q ss_pred CCCCCCCeEE-EEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecC---CHHHHHHH
Q 022170 74 GGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAA 149 (301)
Q Consensus 74 ~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~ 149 (301)
. . ++.++ .|+||++|....+ .+.. .....+.+|++ |+... .+..++.| ++++++++
T Consensus 97 ~--~-~~~IlasntSti~~~~~a~---~~~~------~~r~~G~Hf~~-Pv~~~-------~lveiv~g~~t~~~~~~~~ 156 (293)
T 1zej_A 97 R--L-TNAPLCSNTSVISVDDIAE---RLDS------PSRFLGVHWMN-PPHVM-------PLVEIVISRFTDSKTVAFV 156 (293)
T ss_dssp T--T-CCSCEEECCSSSCHHHHHT---TSSC------GGGEEEEEECS-STTTC-------CEEEEEECTTCCHHHHHHH
T ss_pred c--C-CCCEEEEECCCcCHHHHHH---Hhhc------ccceEeEEecC-ccccC-------CEEEEECCCCCCHHHHHHH
Confidence 2 2 45566 5889999984433 2221 01112378888 55432 34444444 89999999
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCccc
Q 022170 150 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 229 (301)
Q Consensus 150 ~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (301)
.++++.+|++++++++. |++||++. ..++|++.++++ |++++++.+++..+.+.++.. .+|.. +
T Consensus 157 ~~l~~~lGk~~v~v~d~------fi~Nrll~----~~~~EA~~l~~~-Gv~~e~id~~~~~g~g~~~~~--~GP~~-l-- 220 (293)
T 1zej_A 157 EGFLRELGKEVVVCKGQ------SLVNRFNA----AVLSEASRMIEE-GVRAEDVDRVWKHHLGLLYTL--FGPLG-N-- 220 (293)
T ss_dssp HHHHHHTTCEEEEEESS------CHHHHHHH----HHHHHHHHHHHH-TCCHHHHHHHHHTTHHHHHHH--HHHHH-H--
T ss_pred HHHHHHcCCeEEEeccc------ccHHHHHH----HHHHHHHHHHHh-CCCHHHHHHHHHhcCCCCCCC--CCHHH-H--
Confidence 99999999999999864 88888876 578999999999 889999999998776544310 01100 0
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHCCCCCCchHH
Q 022170 230 GVPASRNYGGGFASKLMAKDLNLALASAKE-VGVDCPLTSQAQDIYAKLCENGHDSKDFSC 289 (301)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~-~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~ 289 (301)
-|+ ..++...+-++.+.+...+ .--|.|+++...+.-+...+.|.|..+|..
T Consensus 221 -----~D~---~Gld~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~G~lG~Ktg~Gfy~y~~ 273 (293)
T 1zej_A 221 -----LDY---IGLDVAYYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGP 273 (293)
T ss_dssp -----HHH---HCHHHHHHHHHHHHHHHCCGGGSCCHHHHHHHHTTCCBGGGTBSSSBCCT
T ss_pred -----HHH---hchHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeecCc
Confidence 011 1244444444443332211 112445655544444444566778777753
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-22 Score=173.53 Aligned_cols=173 Identities=16% Similarity=0.215 Sum_probs=133.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhh--------------HHHHHh-CCCCCCCCHHHHHhcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNV--------------MKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~--------------~~~l~~-~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~ 65 (301)
||++||.+|+++||+|++|||++++ .+.+.+ .+...+.++.+++++||+||+|||++. +.+++
T Consensus 30 mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvVilavp~~~--~~~~~ 107 (245)
T 3dtt_A 30 VGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVVNATEGAS--SIAAL 107 (245)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEEEECSCGGG--HHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEEEEccCcHH--HHHHH
Confidence 7999999999999999999999997 555543 355667789999999999999999655 56666
Q ss_pred cCC-CccccCCCCCCCeEEEEeC-----------CCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhcc
Q 022170 66 NGP-NGLLQGGNSVRPQLLIDSS-----------TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 133 (301)
Q Consensus 66 ~~~-~~~l~~~~~~~~~ivid~s-----------t~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g 133 (301)
... ...+ ++++|||+| |++|.+.+.+++.+.+.. ...+ ...++.++++|+++++..+..+
T Consensus 108 ~~i~~~~l------~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l-~~~~-vv~~~~~~~a~v~~~~~~a~~g 179 (245)
T 3dtt_A 108 TAAGAENL------AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTF-PEAK-VVKTLNTMNASLMVDPGRAAGG 179 (245)
T ss_dssp HHHCHHHH------TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHS-TTSE-EEECSTTSCHHHHHCGGGTGGG
T ss_pred HHhhhhhc------CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHC-CCCe-EEEeecccCHHHhcCccccCCC
Confidence 542 1222 467999999 667766655555554310 0000 0013678999999999888888
Q ss_pred ceEEEecC-CHHHHHHHHHHHHhcCCC-eEeeCCcchHHHHHHHHHHHHHHH
Q 022170 134 TLTFMVGG-SEDAYQAAKPLFLSMGKN-TIYCGGAGNGAAAKICNNLTMAVS 183 (301)
Q Consensus 134 ~l~~~~gg-~~~~~~~~~~ll~~~~~~-~~~~g~~g~a~~~k~~~N~~~~~~ 183 (301)
++.++++| |++.++.++++|+.++.. ++++|+.|.|+.+|+++|++..++
T Consensus 180 ~~~~~v~g~d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~~~l~ 231 (245)
T 3dtt_A 180 DHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRLW 231 (245)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHHHHHH
T ss_pred CeeEEEECCCHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHHHHHH
Confidence 88888866 589999999999999974 689999999999999999999665
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-21 Score=174.13 Aligned_cols=256 Identities=13% Similarity=0.109 Sum_probs=175.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC------------CCHHHHHh---cCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK------------ETPFEVAE---ASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~------------~s~~e~~~---~adiVi~~vp~~~~~~~~v~ 65 (301)
||+++|..|.++||+|++|||++++.+.+.+.|.... .+..++.+ ++|+||+|+|++ . +++++
T Consensus 14 ~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~-~-~~~v~ 91 (316)
T 2ew2_A 14 MGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTKAQ-Q-LDAMF 91 (316)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSCHH-H-HHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEeccc-c-HHHHH
Confidence 7999999999999999999999999998887664322 13444444 899999999954 4 78888
Q ss_pred cCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCC--HHHhhccceEEEe--cC
Q 022170 66 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG--VLAAEAGTLTFMV--GG 141 (301)
Q Consensus 66 ~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~--~~~a~~g~l~~~~--gg 141 (301)
......+ .+++++|++++..+ ..+.+.+.+.+..+ .. +..+..++.++. +.....|.+.+.. ++
T Consensus 92 ~~l~~~l-----~~~~~iv~~~~g~~-~~~~l~~~~~~~~v--i~----g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~ 159 (316)
T 2ew2_A 92 KAIQPMI-----TEKTYVLCLLNGLG-HEDVLEKYVPKENI--LV----GITMWTAGLEGPGRVKLLGDGEIELENIDPS 159 (316)
T ss_dssp HHHGGGC-----CTTCEEEECCSSSC-THHHHTTTSCGGGE--EE----EEECCCCEEEETTEEEECSCCCEEEEESSGG
T ss_pred HHHHHhc-----CCCCEEEEecCCCC-cHHHHHHHcCCccE--EE----EEeeeeeEEcCCCEEEEecCCcEEEeecCCC
Confidence 6544333 34678898876432 23444444332100 00 122223333331 1122345555543 45
Q ss_pred CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHcCCC
Q 022170 142 SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT---------------------MAVSMLGVSEALTLGQSLGIS 200 (301)
Q Consensus 142 ~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~---------------------~~~~~~~~~E~~~l~~~~G~~ 200 (301)
+++.++.++++|+.++.++++.++.+.+...|++.|.. ...+..++.|+..++++.|++
T Consensus 160 ~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~la~~~G~~ 239 (316)
T 2ew2_A 160 GKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAEKEAIY 239 (316)
T ss_dssp GHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 78889999999999999888888899999999999964 256788999999999999998
Q ss_pred H--HHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022170 201 A--STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 277 (301)
Q Consensus 201 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 277 (301)
+ +.+.+.+..........+++ +.+ -+|+ ..++..+ ..+++..+.++++++|+++|+.+.++++++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~---~sm------~~d~~~~g~~~E-~~~~~~~~~~~a~~~gv~~P~~~~~~~~~~~~ 309 (316)
T 2ew2_A 240 LDQAEVYTHIVQTYDPNGIGLHY---PSM------YQDLIKNHRLTE-IDYINGAVWRKGQKYNVATPFCAMLTQLVHGK 309 (316)
T ss_dssp CCHHHHHHHHHHTTCTTTTTTSC---CHH------HHHHTTTCCCCS-GGGTHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhccccCCCCC---cHH------HHHHHHcCCcch-HHHHhhHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 6 46667766532111001111 101 1344 4445444 78999999999999999999999999999877
Q ss_pred HHC
Q 022170 278 CEN 280 (301)
Q Consensus 278 ~~~ 280 (301)
...
T Consensus 310 ~~~ 312 (316)
T 2ew2_A 310 EEL 312 (316)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-21 Score=172.39 Aligned_cols=271 Identities=14% Similarity=0.062 Sum_probs=179.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcC--ChhhHHHHHhCCC-----------CCCC--CHHHHHhcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDV--NCNVMKMFSDMGV-----------PTKE--TPFEVAEASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr--~~~~~~~l~~~g~-----------~~~~--s~~e~~~~adiVi~~vp~~~~~~~~v~ 65 (301)
||+++|..|+++||+|++|+| ++++.+.+.+.|. ..++ ++.++++++|+||+|+|++ . +++++
T Consensus 11 mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~-~-~~~v~ 88 (335)
T 1txg_A 11 MGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVSTD-G-VLPVM 88 (335)
T ss_dssp HHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSCGG-G-HHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCChH-H-HHHHH
Confidence 799999999999999999999 9999999988764 3344 7778889999999999965 4 88888
Q ss_pred cCCCccccCCCCCCCeEEEEeC-CC---CHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecC
Q 022170 66 NGPNGLLQGGNSVRPQLLIDSS-TI---DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 141 (301)
Q Consensus 66 ~~~~~~l~~~~~~~~~ivid~s-t~---~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg 141 (301)
....+ + .+++++|+++ ++ .|.+.+.+.+.+.+. .+......+...|...........+..++.+.
T Consensus 89 ~~i~~-l-----~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~-----~g~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 157 (335)
T 1txg_A 89 SRILP-Y-----LKDQYIVLISKGLIDFDNSVLTVPEAVWRLK-----HDLRERTVAITGPAIAREVAKRMPTTVVFSSP 157 (335)
T ss_dssp HHHTT-T-----CCSCEEEECCCSEEEETTEEEEHHHHHHTTS-----TTCGGGEEEEESSCCHHHHHTTCCEEEEEECS
T ss_pred HHHhc-C-----CCCCEEEEEcCcCccCCCCcCccHHHHHHHh-----cCCCCcEEEEECCCcHHHHHccCCcEEEEEeC
Confidence 65444 3 2457888887 56 555666676666531 01000123444554322111112233444455
Q ss_pred CHHHHHHHHHHHHhcCCCeEeeCCc-----------------chHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCC
Q 022170 142 SEDAYQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKIC-----NNLTMAVSMLGVSEALTLGQSLGI 199 (301)
Q Consensus 142 ~~~~~~~~~~ll~~~~~~~~~~g~~-----------------g~a~~~k~~-----~N~~~~~~~~~~~E~~~l~~~~G~ 199 (301)
+++.++.++++|+..+.++++.+++ |....+|+. +|.+...+..++.|+..++++.|+
T Consensus 158 ~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~~~la~~~G~ 237 (335)
T 1txg_A 158 SESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGG 237 (335)
T ss_dssp CHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 7888999999999988888777775 333446888 898889999999999999999999
Q ss_pred CHHHHH------HHHhhcCCCccccccCCCCCCcccCCCCCCCCCC-C---cchhhHHHHHHHHHHHHHHcCCCchHHHH
Q 022170 200 SASTLT------KILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG-G---FASKLMAKDLNLALASAKEVGVDCPLTSQ 269 (301)
Q Consensus 200 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~kd~~~~~~~a~~~g~~~p~~~~ 269 (301)
++++++ +.+..+.. ++++.....+..+.....+... + |...+..||+..+.++++++|+++|+.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~E~~~~~~~~~~~a~~~gv~~P~~~~ 313 (335)
T 1txg_A 238 DRETAFGLSGFGDLIATFRG----GRNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINADTKLLDS 313 (335)
T ss_dssp CGGGGGSTTTHHHHHHTTTC----HHHHHHHHHHHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred Ccchhhcccchhheeecccc----CccHHHHHHHhCCCCHHHHHHHhccCCceecchHHHHHHHHHHHHHcCCCCcHHHH
Confidence 998765 44433221 1111000000000000000000 0 02345679999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCchHHHHHHHh
Q 022170 270 AQDIYAKLCENGHDSKDFSCVFQHYY 295 (301)
Q Consensus 270 ~~~~~~~a~~~g~g~~d~~~~~~~~~ 295 (301)
++++++. ..+....++.+.
T Consensus 314 ~~~~~~~-------~~~~~~~~~~l~ 332 (335)
T 1txg_A 314 IYRVLYE-------GLKVEEVLFELA 332 (335)
T ss_dssp HHHHHHS-------CCCHHHHHHHHH
T ss_pred HHHHHhC-------CCCHHHHHHHHH
Confidence 9998863 235566665554
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-20 Score=157.65 Aligned_cols=238 Identities=13% Similarity=0.110 Sum_probs=173.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||.+++.+|.+.||+|.+|||++++.+.+.+. |+..+.++.++++++|+||+|+| +.. +++++... . +
T Consensus 14 mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~-~~~v~~~l---~------~ 82 (259)
T 2ahr_A 14 MASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQL-FETVLKPL---H------F 82 (259)
T ss_dssp HHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGG-HHHHHTTS---C------C
T ss_pred HHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHh-HHHHHHHh---c------c
Confidence 79999999999999999999999999888765 88888899999999999999999 555 78887542 1 3
Q ss_pred CeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecC--CHHHHHHHHHHHHhc
Q 022170 80 PQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSM 156 (301)
Q Consensus 80 ~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~ 156 (301)
++++|++ +++++++ +.+.+.. +..++. ++.+.+.....|...++.++ +++.++.++++|+.+
T Consensus 83 ~~~vv~~~~~~~~~~---l~~~~~~-----------~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~ 147 (259)
T 2ahr_A 83 KQPIISMAAGISLQR---LATFVGQ-----------DLPLLR-IMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSF 147 (259)
T ss_dssp CSCEEECCTTCCHHH---HHHHHCT-----------TSCEEE-EECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCHHH---HHHhcCC-----------CCCEEE-EcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHHHhC
Confidence 5688888 4677764 3333321 135555 56666666767766666776 888999999999999
Q ss_pred CCCeEeeCCcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcc-ccccCCCCCCcccCCCC
Q 022170 157 GKNTIYCGGAGNGAAAKIC--NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-SSDSYNPVPGVMEGVPA 233 (301)
Q Consensus 157 ~~~~~~~g~~g~a~~~k~~--~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 233 (301)
+ .++++++......+++. .|.+....+..+.|+ +++.|+|++++.+++..+...++ ......+-|..+ .
T Consensus 148 G-~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l----~ 219 (259)
T 2ahr_A 148 G-STFDISEKDFDTFTALAGSSPAYIYLFIEALAKA---GVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDF----I 219 (259)
T ss_dssp E-EEEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHHH----H
T ss_pred C-CEEEecHHHccHHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH----H
Confidence 9 58889887777777764 244444444445444 78899999999999987754444 222122112222 1
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 022170 234 SRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 279 (301)
Q Consensus 234 ~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 279 (301)
++.++++|++..+.||++ +.|++..+.+++.+.++++.+
T Consensus 220 ~~~~~p~~~~~~~~~~l~-------~~g~~~~~~~a~~~~~~r~~~ 258 (259)
T 2ahr_A 220 DAICSPGGTTIAGLMELE-------RLGLTATVSSAIDKTIDKAKS 258 (259)
T ss_dssp HHHCCTTSHHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCChhHHHHHHHHH-------HCChHHHHHHHHHHHHHHHhc
Confidence 334577888888888884 678888889999988888754
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-21 Score=177.61 Aligned_cols=269 Identities=12% Similarity=0.070 Sum_probs=181.7
Q ss_pred CcHHHHHHHHhCC-------CeEEEEcCChh-----hHHHHHhC--------------CCCCCCCHHHHHhcCCEEEEec
Q 022170 1 MGFRMASNLMKAG-------YKMAVHDVNCN-----VMKMFSDM--------------GVPTKETPFEVAEASDVVITML 54 (301)
Q Consensus 1 mG~~lA~~L~~~G-------~~V~~~dr~~~-----~~~~l~~~--------------g~~~~~s~~e~~~~adiVi~~v 54 (301)
||++||.+|+++| |+|++|||+++ +.+.+.+. ++..++++.++++++|+||+||
T Consensus 32 mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~~~aDvVilav 111 (375)
T 1yj8_A 32 WASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVINDADLLIFIV 111 (375)
T ss_dssp HHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHHcCCCEEEEcC
Confidence 7999999999999 99999999998 88887653 2344567888899999999999
Q ss_pred CCCccchhhhhcCCCc----cccCCCCCCCeEEEEeC-CCCH--HHHHHHHHHHhhchhhhccCCCCCceEEecccCCCH
Q 022170 55 PSSSHQVLDVYNGPNG----LLQGGNSVRPQLLIDSS-TIDP--QTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV 127 (301)
Q Consensus 55 p~~~~~~~~v~~~~~~----~l~~~~~~~~~ivid~s-t~~p--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~ 127 (301)
|+ .. +++++.+... .+ .+++++|+++ ++.+ .+.+.+.+.+.+. .+ ....++.+|.+...
T Consensus 112 ~~-~~-~~~vl~~i~~~~~~~l-----~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~-----~~--~~~~v~~gp~~a~~ 177 (375)
T 1yj8_A 112 PC-QY-LESVLASIKESESIKI-----ASHAKAISLTKGFIVKKNQMKLCSNYISDF-----LN--IPCSALSGANIAMD 177 (375)
T ss_dssp CH-HH-HHHHHHHHTC---CCC-----CTTCEEEECCCSCEEETTEEECHHHHHHHH-----SS--SCEEEEECSCCHHH
T ss_pred CH-HH-HHHHHHHHhhhhhccC-----CCCCEEEEeCCccccCCccccCHHHHHHHH-----cC--CCEEEEeCCchHHH
Confidence 95 55 8898876443 33 3467888887 5566 2334454544331 11 12456677766544
Q ss_pred HHhhccceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcc---hHHH--------------HHHHHHHHHHHHHHHHHHH
Q 022170 128 LAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAG---NGAA--------------AKICNNLTMAVSMLGVSEA 190 (301)
Q Consensus 128 ~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~~g---~a~~--------------~k~~~N~~~~~~~~~~~E~ 190 (301)
......+..++.+++++.++.++++|+..+.++++.+++- -+.. +|+.+|...+.+..++.|+
T Consensus 178 v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~a~~~~~~~E~ 257 (375)
T 1yj8_A 178 VAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEM 257 (375)
T ss_dssp HHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhCCCeEEEEecCCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Confidence 4443445556667788899999999999888887777642 2222 3455888999999999999
Q ss_pred HHHHHHc--CCCHHHHHHH------HhhcCCCccccccCCCCCCccc-CCCCCCCCCC------CcchhhHHHHHHHHHH
Q 022170 191 LTLGQSL--GISASTLTKI------LNSSSARCWSSDSYNPVPGVME-GVPASRNYGG------GFASKLMAKDLNLALA 255 (301)
Q Consensus 191 ~~l~~~~--G~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~kd~~~~~~ 255 (301)
..++++. |++++++.++ +..+.. ++++..+..+.. +. ...+.. .+...++.||++.+++
T Consensus 258 ~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~----~~~~~~~~~~~~~g~--~~~~~d~~~~~~~g~~~E~~~~~~~v~~ 331 (375)
T 1yj8_A 258 ILFGKVFFQKFNENILLESCGFADIITSFLA----GRNAKCSAEFIKSTP--KKTWEELENEILKGQKLQGTVTLKYVYH 331 (375)
T ss_dssp HHHHHHHSSCCCGGGGGSTTTHHHHHHHHSS----SSHHHHHHHHHHHTT--SSCHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHhccCCCcchhhccccccceeEeeeC----CccHHHHHHHHhcCC--CCCHHHHHHhhcCCcEeeHHHHHHHHHH
Confidence 9999999 6998887543 222211 111100000100 00 000110 1456688999999999
Q ss_pred HHHHcCC--CchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 256 SAKEVGV--DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 256 ~a~~~g~--~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
+++++|+ ++|+.+.++++++ ++.+...+++.+..
T Consensus 332 ~a~~~gv~~~~P~~~~v~~~~~-------~~~~~~~~~~~l~~ 367 (375)
T 1yj8_A 332 MIKEKNMTNEFPLFTVLHKISF-------ENEDPSSLLKTFMN 367 (375)
T ss_dssp HHHHTTCGGGCHHHHHHHHHHH-------SCCCTTHHHHHHSS
T ss_pred HHHHhCCCCCCCHHHHHHHHHh-------CCCCHHHHHHHHHc
Confidence 9999999 9999999999875 23344444555543
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=163.45 Aligned_cols=241 Identities=12% Similarity=0.090 Sum_probs=169.5
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||.++|.+|.++| |+|++|||++++.+.+.+. |+..+.++.+++ ++|+||+|+| +.. +++++... .+ .
T Consensus 11 mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~-~~~v~~~l---~~----~ 80 (263)
T 1yqg_A 11 MAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQD-MEAACKNI---RT----N 80 (263)
T ss_dssp HHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHH-HHHHHTTC---CC----T
T ss_pred HHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chh-HHHHHHHh---cc----C
Confidence 7999999999999 9999999999999988775 888777888888 9999999999 666 88888643 21 2
Q ss_pred CCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecC--CHHHHHHHHHHHHh
Q 022170 79 RPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLS 155 (301)
Q Consensus 79 ~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~ 155 (301)
+++||++ +++++ +.+.+.+.. +.+++.+ +.+.+.....|...++.++ +++.++.++++|+.
T Consensus 81 -~~ivv~~~~g~~~---~~l~~~~~~-----------~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~ 144 (263)
T 1yqg_A 81 -GALVLSVAAGLSV---GTLSRYLGG-----------TRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKS 144 (263)
T ss_dssp -TCEEEECCTTCCH---HHHHHHTTS-----------CCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred -CCEEEEecCCCCH---HHHHHHcCC-----------CCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799998 77776 344444431 2467776 5666666667777777777 88899999999999
Q ss_pred cCCCeEeeC-CcchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcc-ccccCCCCCCcccCC
Q 022170 156 MGKNTIYCG-GAGNGAAAKI--CNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-SSDSYNPVPGVMEGV 231 (301)
Q Consensus 156 ~~~~~~~~g-~~g~a~~~k~--~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 231 (301)
++..+ +++ +.......-+ ..+.+....+..+.|+ +++.|++++++.+++..+...++ .......-|. .
T Consensus 145 ~g~~~-~~~~~~~~~~~~al~g~~~~~~~~~~~~l~e~---~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 216 (263)
T 1yqg_A 145 VGLTV-WLDDEEKMHGITGISGSGPAYVFYLLDALQNA---AIRQGFDMAEARALSLATFKGAVALAEQTGEDFE----K 216 (263)
T ss_dssp TEEEE-ECSSTTHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHH----H
T ss_pred CCCEE-EeCChhhccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHH----H
Confidence 99766 787 5111111111 1122233444555555 78899999999998866543222 2111111111 1
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCC
Q 022170 232 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGH 282 (301)
Q Consensus 232 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~ 282 (301)
+.++.+.+++++..+.|++ ++.|++.|+.+++.+.|+++.+.|.
T Consensus 217 ~~~~~~~~~~~~~~~l~~l-------~~~~~~~~~~~a~~~~~~~~~~~~~ 260 (263)
T 1yqg_A 217 LQKNVTSKGGTTHEAVEAF-------RRHRVAEAISEGVCACVRRSQEMER 260 (263)
T ss_dssp HHHHTCCTTSHHHHHHHHH-------HHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCChhHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHHh
Confidence 2245567788777777666 6689999999999999999987663
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-20 Score=165.31 Aligned_cols=245 Identities=10% Similarity=0.048 Sum_probs=164.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC--C------CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV--P------TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~--~------~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||+++|.+|.++||+|++|+|++++.+.+...+. . ..++ .+.++++|+||+|+|++ . +++++.+....+
T Consensus 11 ~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v~~~-~-~~~v~~~l~~~l 87 (291)
T 1ks9_A 11 LGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLKAW-Q-VSDAVKSLASTL 87 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSCGG-G-HHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEecHH-h-HHHHHHHHHhhC
Confidence 7999999999999999999999987766654331 1 1234 46778999999999965 4 788886543333
Q ss_pred cCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEe-cCCHHHHHHHHH
Q 022170 73 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMV-GGSEDAYQAAKP 151 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~-gg~~~~~~~~~~ 151 (301)
.+++++|++++.. ...+.+.+.+.+. ..|......+.++| . +.....|.+.+.. +++++.++.+++
T Consensus 88 -----~~~~~vv~~~~g~-~~~~~l~~~~~~~----~~g~~~~~~~~~~p-~--~~~~~~g~~~i~~~~~~~~~~~~~~~ 154 (291)
T 1ks9_A 88 -----PVTTPILLIHNGM-GTIEELQNIQQPL----LMGTTTHAARRDGN-V--IIHVANGITHIGPARQQDGDYSYLAD 154 (291)
T ss_dssp -----CTTSCEEEECSSS-CTTGGGTTCCSCE----EEEEECCEEEEETT-E--EEEEECCCEEEEESSGGGTTCTHHHH
T ss_pred -----CCCCEEEEecCCC-CcHHHHHHhcCCe----EEEEEeEccEEcCC-E--EEEecccceEEccCCCCcchHHHHHH
Confidence 3456888876532 2222333222110 00100001134455 2 2334456655554 456677889999
Q ss_pred HHHhcCCCeEeeCCcchHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCH--HHH----HHH
Q 022170 152 LFLSMGKNTIYCGGAGNGAAAKICNNLTM------------------AVSMLGVSEALTLGQSLGISA--STL----TKI 207 (301)
Q Consensus 152 ll~~~~~~~~~~g~~g~a~~~k~~~N~~~------------------~~~~~~~~E~~~l~~~~G~~~--~~~----~~~ 207 (301)
+|+.++.++++.++++.+...|++.|... ..+..++.|++.++++.|++. +.+ .++
T Consensus 155 ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~ 234 (291)
T 1ks9_A 155 ILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQV 234 (291)
T ss_dssp HHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999988 788899999999999999986 454 333
Q ss_pred HhhcC-CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 022170 208 LNSSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 278 (301)
Q Consensus 208 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 278 (301)
+.... ..+.+. +|+..++..+ ..++++.+.++++++|+++|+.+.++++++...
T Consensus 235 ~~~~~~~~ssm~----------------~d~~~g~~~e-~~~~~g~~~~~a~~~gv~~P~~~~~~~~~~~~e 289 (291)
T 1ks9_A 235 IDATAENISSML----------------QDIRALRHTE-IDYINGFLLRRARAHGIAVPENTRLFEMVKRKE 289 (291)
T ss_dssp HHHTTTCCCHHH----------------HHHHTTCCCS-GGGTHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HhcCCCCCChHH----------------HHHHcCCccH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 33221 111111 1222222222 125678899999999999999999999997653
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-20 Score=169.80 Aligned_cols=256 Identities=13% Similarity=0.082 Sum_probs=170.5
Q ss_pred CcHHHHHHHHhCC-------CeEEEEcCChh-----hHHHHHhCC--------------CCCCCCHHHHHhcCCEEEEec
Q 022170 1 MGFRMASNLMKAG-------YKMAVHDVNCN-----VMKMFSDMG--------------VPTKETPFEVAEASDVVITML 54 (301)
Q Consensus 1 mG~~lA~~L~~~G-------~~V~~~dr~~~-----~~~~l~~~g--------------~~~~~s~~e~~~~adiVi~~v 54 (301)
||+++|..|+++| |+|++|+|+++ +.+.+.+.+ +..++++.++++++|+||+||
T Consensus 19 mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~Vilav 98 (354)
T 1x0v_A 19 WGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVV 98 (354)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHHHcCCCEEEEeC
Confidence 7999999999999 99999999998 787776521 233567888899999999999
Q ss_pred CCCccchhhhhcCCCccccCCCCCCCeEEEEeCC-CC--HHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhh
Q 022170 55 PSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST-ID--PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE 131 (301)
Q Consensus 55 p~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st-~~--p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~ 131 (301)
|+ .. +++++.+....+ .+++++|++++ +. |.+.+.+.+.+.+. .+ ....++.+|.+.......
T Consensus 99 ~~-~~-~~~v~~~i~~~l-----~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~-----~~--~~~~v~~gp~~a~~v~~g 164 (354)
T 1x0v_A 99 PH-QF-IGKICDQLKGHL-----KANATGISLIKGVDEGPNGLKLISEVIGER-----LG--IPMSVLMGANIASEVADE 164 (354)
T ss_dssp CG-GG-HHHHHHHHTTCS-----CTTCEEEECCCCBCSSSSSCCBHHHHHHHH-----HT--CCEEEEECSCCHHHHHTT
T ss_pred CH-HH-HHHHHHHHHhhC-----CCCCEEEEECCccCCCCCccccHHHHHHHH-----cC--CCEEEEECCCcHHHHHhc
Confidence 95 44 888886644433 34678888876 44 34334444444321 01 123456666654333222
Q ss_pred ccceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHH---H--------------HHHHHHHHHHHHHHHHHHHHHH
Q 022170 132 AGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA---A--------------KICNNLTMAVSMLGVSEALTLG 194 (301)
Q Consensus 132 ~g~l~~~~gg~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~---~--------------k~~~N~~~~~~~~~~~E~~~l~ 194 (301)
..+..++.+++++.++.++++|+..+.++++.+++-.... + |+.+|.....+..++.|+..++
T Consensus 165 ~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~~~~E~~~la 244 (354)
T 1x0v_A 165 KFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFA 244 (354)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHH
Confidence 2244555666888999999999998888877776432222 2 3448888899999999999999
Q ss_pred HHcCC---CHHHHHHH------HhhcCCCccccccCCCCCCccc-CCCCCCCCC---CCcchhhHHHHHHHHHHHHHHcC
Q 022170 195 QSLGI---SASTLTKI------LNSSSARCWSSDSYNPVPGVME-GVPASRNYG---GGFASKLMAKDLNLALASAKEVG 261 (301)
Q Consensus 195 ~~~G~---~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~kd~~~~~~~a~~~g 261 (301)
++.|+ +++++.++ +..++. ++++..++.+.. +... .+.. ..+...++.||++.++++++++|
T Consensus 245 ~a~G~~~~~~~~~~~~~g~~d~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~E~~~~~g~v~~~a~~~g 319 (354)
T 1x0v_A 245 KLFCSGPVSSATFLESCGVADLITTCYG----GRNRKVAEAFARTGKSI-EQLEKELLNGQKLQGPETARELYSILQHKG 319 (354)
T ss_dssp HHHSSSCCCGGGGGSTTTHHHHHHHHHH----CHHHHHHHHHHHHCCCH-HHHHHHHSTTCCCHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCCcccccccchHHHHHHhhcc----cccHHHHHHHHhcCCCH-HHHHHhhcCCcEeehHHHHHHHHHHHHHhC
Confidence 99999 88776432 221110 111100111110 0000 0000 01446678899999999999999
Q ss_pred C--CchHHHHHHHHHH
Q 022170 262 V--DCPLTSQAQDIYA 275 (301)
Q Consensus 262 ~--~~p~~~~~~~~~~ 275 (301)
+ ++|+.+.++++++
T Consensus 320 v~~~~P~~~~v~~~~~ 335 (354)
T 1x0v_A 320 LVDKFPLFMAVYKVCY 335 (354)
T ss_dssp CGGGSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh
Confidence 9 9999999999885
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-19 Score=159.12 Aligned_cols=247 Identities=10% Similarity=0.054 Sum_probs=162.2
Q ss_pred CcHHHHHHHHhC-----C-CeEEEEcCChhhHHHHHh-CCCCCCC-------------CHHHHHhcCCEEEEecCCCccc
Q 022170 1 MGFRMASNLMKA-----G-YKMAVHDVNCNVMKMFSD-MGVPTKE-------------TPFEVAEASDVVITMLPSSSHQ 60 (301)
Q Consensus 1 mG~~lA~~L~~~-----G-~~V~~~dr~~~~~~~l~~-~g~~~~~-------------s~~e~~~~adiVi~~vp~~~~~ 60 (301)
||+++|.+|+++ | |+|++|+| +++.+.+.+ .|+.... +..+.+..+|+||+|||++.
T Consensus 19 mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~vk~~~-- 95 (317)
T 2qyt_A 19 VGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYILFCTKDYD-- 95 (317)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEEEECCSSSC--
T ss_pred HHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEEEEecCccc--
Confidence 799999999999 9 99999999 888999988 7765432 34456788999999999654
Q ss_pred hhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCH--HHhhccceEEE
Q 022170 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV--LAAEAGTLTFM 138 (301)
Q Consensus 61 ~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~--~~a~~g~l~~~ 138 (301)
+++++......+ .++++||++++. +...+.+.+.+.+. ....++.++++++.+.. .....+++.+
T Consensus 96 ~~~v~~~i~~~l-----~~~~~iv~~~nG-~~~~~~l~~~l~~~------~v~~g~~~~~a~~~~pg~~~~~~~g~~~~- 162 (317)
T 2qyt_A 96 MERGVAEIRPMI-----GQNTKILPLLNG-ADIAERMRTYLPDT------VVWKGCVYISARKSAPGLITLEADRELFY- 162 (317)
T ss_dssp HHHHHHHHGGGE-----EEEEEEEECSCS-SSHHHHHTTTSCTT------TBCEEEEEEEEEEEETTEEEEEEEEEEEE-
T ss_pred HHHHHHHHHhhc-----CCCCEEEEccCC-CCcHHHHHHHCCCC------cEEEEEEEEEEEEcCCCEEEEcCCCceEE-
Confidence 788886544333 235688887654 23333444433221 01113556777776421 2233444332
Q ss_pred ec-----CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHH-------------------HHHHHHHHHHHHH
Q 022170 139 VG-----GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA-------------------VSMLGVSEALTLG 194 (301)
Q Consensus 139 ~g-----g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~-------------------~~~~~~~E~~~l~ 194 (301)
+| ++.+.+ .++++|+..+.++++.++++.+...|++.|.... .+..++.|++.++
T Consensus 163 ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~E~~~v~ 241 (317)
T 2qyt_A 163 FGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEEVAELF 241 (317)
T ss_dssp EECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 346667 8999999999988888999999999999998754 4558999999999
Q ss_pred HHcCCCHH--HHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 022170 195 QSLGISAS--TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 272 (301)
Q Consensus 195 ~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~ 272 (301)
++.|++++ .+.+.+.... +....++ +.+ -+|+..++... ....++.++++++++|+++|+.+.+++
T Consensus 242 ~a~G~~~~~~~~~~~~~~~~--~~~~~~~---~sm------~~d~~~g~~~E-~~~~~g~~~~~a~~~gv~~P~~~~~~~ 309 (317)
T 2qyt_A 242 RAKYGQVPDDVVQQLLDKQR--KMPPEST---SSM------HSDFLQGGSTE-VETLTGYVVREAEALRVDLPMYKRMYR 309 (317)
T ss_dssp HHHTSCCCSSHHHHHHHHHH--HC------------------------------CTTTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHcCCCCChHHHHHHHHHHh--ccCCCCC---ChH------HHHHHcCCccC-HHHHhhHHHHHHHHcCCCCCHHHHHHH
Confidence 99999864 5666665421 0001111 111 12333333211 112377999999999999999999998
Q ss_pred HHHH
Q 022170 273 IYAK 276 (301)
Q Consensus 273 ~~~~ 276 (301)
+++.
T Consensus 310 ~~~~ 313 (317)
T 2qyt_A 310 ELVS 313 (317)
T ss_dssp TTCC
T ss_pred HHHH
Confidence 8753
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=155.54 Aligned_cols=256 Identities=13% Similarity=0.152 Sum_probs=162.0
Q ss_pred CcHHHHHHHHhCC----CeEEEEcCChh--hHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKAG----YKMAVHDVNCN--VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~G----~~V~~~dr~~~--~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
||++||.+|.++| |+|++|||+++ +.+.+.+.|+..+.++.++++++|+||+||| +.. +++++.+....+
T Consensus 33 mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~-~~~vl~~l~~~l-- 108 (322)
T 2izz_A 33 LAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHI-IPFILDEIGADI-- 108 (322)
T ss_dssp HHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGG-HHHHHHHHGGGC--
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHH-HHHHHHHHHhhc--
Confidence 7999999999999 89999999986 8888888898888899999999999999999 555 899886543332
Q ss_pred CCCCCCeEEEEeCC-CCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCC---HHHHHHHH
Q 022170 75 GNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGS---EDAYQAAK 150 (301)
Q Consensus 75 ~~~~~~~ivid~st-~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~---~~~~~~~~ 150 (301)
.++++||++++ +.+. .+.+.+.+. .. +..++.+ +...+.....|. +++++|+ ++.++.++
T Consensus 109 ---~~~~ivvs~s~gi~~~---~l~~~l~~~----~~----~~~vv~~-~p~~p~~~~~g~-~v~~~g~~~~~~~~~~v~ 172 (322)
T 2izz_A 109 ---EDRHIVVSCAAGVTIS---SIEKKLSAF----RP----APRVIRC-MTNTPVVVREGA-TVYATGTHAQVEDGRLME 172 (322)
T ss_dssp ---CTTCEEEECCTTCCHH---HHHHHHHTT----SS----CCEEEEE-ECCGGGGGTCEE-EEEEECTTCCHHHHHHHH
T ss_pred ---CCCCEEEEeCCCCCHH---HHHHHHhhc----CC----CCeEEEE-eCCcHHHHcCCe-EEEEeCCCCCHHHHHHHH
Confidence 34679999875 4443 344544320 00 1233332 222333334454 6777776 78899999
Q ss_pred HHHHhcCCCeEeeCCcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccc-ccCCCCCCc
Q 022170 151 PLFLSMGKNTIYCGGAGNGAAAKIC--NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSS-DSYNPVPGV 227 (301)
Q Consensus 151 ~ll~~~~~~~~~~g~~g~a~~~k~~--~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 227 (301)
++|+.+|..++ +.+........+. .|.+.+..+..+.|+ +++.|++++.+.+++..+...++.. ......|..
T Consensus 173 ~ll~~~G~~~~-~~e~~~~~~~a~~g~gpa~~~~~~eala~a---~~~~Gl~~~~a~~l~~~~~~g~~~~~~~~~~~p~~ 248 (322)
T 2izz_A 173 QLLSSVGFCTE-VEEDLIDAVTGLSGSGPAYAFTALDALADG---GVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQ 248 (322)
T ss_dssp HHHHTTEEEEE-CCGGGHHHHHHHTTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHhCCCEEE-eCHHHHHHHHHHhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 99999997654 4442223333322 234443333444443 5789999999999988764333211 101111111
Q ss_pred ccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHH
Q 022170 228 MEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 291 (301)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~ 291 (301)
+. +..+.++++.. ..++.+++.|++.++.+++.+.|+++.+.|.++...+..-
T Consensus 249 l~----~~v~sp~g~t~-------~~l~~l~~~g~~~~~~~av~~~~~ra~e~~~~~~~~~~~~ 301 (322)
T 2izz_A 249 LK----DNVSSPGGATI-------HALHVLESGGFRSLLINAVEASCIRTRELQSMADQEQVSP 301 (322)
T ss_dssp HH----HHHCCTTSHHH-------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HH----HhCCCCCcHHH-------HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccH
Confidence 11 11224444333 3445678889999999999999999998877655444333
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=153.06 Aligned_cols=190 Identities=13% Similarity=0.133 Sum_probs=146.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||+++|..|.++||+|++|||++++.+.+.+.|+... ++.++++++|+||+|+|++ . +++++.+....+ .++
T Consensus 23 mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~~~-~-~~~v~~~l~~~l-----~~~ 94 (286)
T 3c24_A 23 MGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALPDN-I-IEKVAEDIVPRV-----RPG 94 (286)
T ss_dssp HHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSCHH-H-HHHHHHHHGGGS-----CTT
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCCch-H-HHHHHHHHHHhC-----CCC
Confidence 7999999999999999999999999998888786654 6778889999999999954 4 788886533322 356
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCH------HHhhccc-------eE--EEecCCHH
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGV------LAAEAGT-------LT--FMVGGSED 144 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~------~~a~~g~-------l~--~~~gg~~~ 144 (301)
+++||+|+..|... +.+ . ..+..|+ ..|+++++ .....|+ .. +..+++++
T Consensus 95 ~ivv~~s~~~~~~~--l~~-~-----------~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~ 160 (286)
T 3c24_A 95 TIVLILDAAAPYAG--VMP-E-----------RADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEE 160 (286)
T ss_dssp CEEEESCSHHHHHT--CSC-C-----------CTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTH
T ss_pred CEEEECCCCchhHH--HHh-h-----------hCCCeEEecCCCCccccccccchhhccCcccccccceeeeeccCCCHH
Confidence 79999887664321 111 1 1136788 89999887 5455663 12 33567899
Q ss_pred HHHHHHHHHHhcCC---CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhhcC
Q 022170 145 AYQAAKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILNSSS 212 (301)
Q Consensus 145 ~~~~~~~ll~~~~~---~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~-~G~~~~~~~~~~~~~~ 212 (301)
.++.++++|+.+|. +++++++.+.+...|.++|.....++..+.|++..+.+ .|+|.+++.+++..+.
T Consensus 161 ~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~~ 232 (286)
T 3c24_A 161 HYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHL 232 (286)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999998 78999877666666999998888888889997766555 5999999999887653
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-19 Score=162.16 Aligned_cols=261 Identities=12% Similarity=0.065 Sum_probs=172.7
Q ss_pred CcHHHHHHHHhCCC--------eEEEEcCChhh-----HHHHHhC--------------CCCCCCCHHHHHhcCCEEEEe
Q 022170 1 MGFRMASNLMKAGY--------KMAVHDVNCNV-----MKMFSDM--------------GVPTKETPFEVAEASDVVITM 53 (301)
Q Consensus 1 mG~~lA~~L~~~G~--------~V~~~dr~~~~-----~~~l~~~--------------g~~~~~s~~e~~~~adiVi~~ 53 (301)
||++||..|+++|| +|++|.|+++. .+.++.. .+.+++++.++++++|+||++
T Consensus 45 WGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al~~ad~ii~a 124 (391)
T 4fgw_A 45 WGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSVKDVDIIVFN 124 (391)
T ss_dssp HHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHHhcCCEEEEE
Confidence 79999999999886 59999998764 3444433 244567899999999999999
Q ss_pred cCCCccchhhhhcCCCccccCCCCCCCeEEEEe-CCCCHHH--HHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHh
Q 022170 54 LPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQT--SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAA 130 (301)
Q Consensus 54 vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~-st~~p~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a 130 (301)
||. +. +++++.+..+.+. ++.++|.+ .++.+.+ .+.+.+.+.+. .+ ..+.++++|.+..+...
T Consensus 125 vPs-~~-~r~~l~~l~~~~~-----~~~~iv~~~KGie~~~~~~~~~se~i~e~-----~~--~~~~vLsGPs~A~EVa~ 190 (391)
T 4fgw_A 125 IPH-QF-LPRICSQLKGHVD-----SHVRAISCLKGFEVGAKGVQLLSSYITEE-----LG--IQCGALSGANIATEVAQ 190 (391)
T ss_dssp SCG-GG-HHHHHHHHTTTSC-----TTCEEEECCCSCEEETTEEECHHHHHHHH-----HC--CEEEEEECSCCHHHHHT
T ss_pred CCh-hh-hHHHHHHhccccC-----CCceeEEeccccccccccchhHHHHHHHH-----hC--ccceeccCCchHHHhhc
Confidence 995 55 8999987665552 34556655 4555432 13344444431 01 12678999999988888
Q ss_pred hccceEEEecCCHH---------HHHHHHHHHHhcCCCeEeeCCc-----------------chHHHHHHHHHHHHHHHH
Q 022170 131 EAGTLTFMVGGSED---------AYQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSM 184 (301)
Q Consensus 131 ~~g~l~~~~gg~~~---------~~~~~~~ll~~~~~~~~~~g~~-----------------g~a~~~k~~~N~~~~~~~ 184 (301)
...+.+++.+.+++ ..+.++.+|..-..+++...++ |....+++..|+.+++++
T Consensus 191 ~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAaGi~dGlg~G~NakAALit 270 (391)
T 4fgw_A 191 EHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAAIQR 270 (391)
T ss_dssp TCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 88886655544332 2456777776555555444442 344445677999999999
Q ss_pred HHHHHHHHHHHHc---CCCHHHHHHHHhhcC--CCccccccCCCCCCccc-CCCCCCCCCC--CcchhhHHHHHHHHHHH
Q 022170 185 LGVSEALTLGQSL---GISASTLTKILNSSS--ARCWSSDSYNPVPGVME-GVPASRNYGG--GFASKLMAKDLNLALAS 256 (301)
Q Consensus 185 ~~~~E~~~l~~~~---G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~kd~~~~~~~ 256 (301)
++++|+.+|++++ |-++.++..+.+.|+ .++..++|+..+..+.. |...+..-.. ...+.++.+..+.+.++
T Consensus 271 rGl~Em~rlg~al~~~g~~~tt~~glaGlGDLi~Tc~sSRNr~~G~~lg~~G~~~~~~~~~~~~g~v~EGv~ta~~v~~l 350 (391)
T 4fgw_A 271 VGLGEIIRFGQMFFPESREETYYQESAGVADLITTCAGGRNVKVARLMATSGKDAWECEKELLNGQSAQGLITCKEVHEW 350 (391)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHSTTTHHHHHHHHHSSHHHHHHHHHHHTCCCHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCceeecCCCcccceeEEecCCccHHHHHHHHhcCCCHHHHHHHHhCCCEEehHHHHHHHHHH
Confidence 9999999999998 445555555545552 11222566544322221 2111000000 12356788899999999
Q ss_pred HHHcCC--CchHHHHHHHHHH
Q 022170 257 AKEVGV--DCPLTSQAQDIYA 275 (301)
Q Consensus 257 a~~~g~--~~p~~~~~~~~~~ 275 (301)
+++.++ ++||++++++++.
T Consensus 351 ~~~~~v~~emPI~~~vy~IL~ 371 (391)
T 4fgw_A 351 LETCGSVEDFPLFEAVYQIVY 371 (391)
T ss_dssp HHHHTCSTTCHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHh
Confidence 999999 8999999999876
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-18 Score=150.86 Aligned_cols=188 Identities=12% Similarity=0.129 Sum_probs=139.5
Q ss_pred CcHHHHHHHHhCCCe-EEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~-V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||..+|..|.+.||+ |.+|||++++.+.+.+. |+..+.++.++++++|+||+|+|++ . +++++.+....+ .
T Consensus 21 mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~-~~~v~~~l~~~~-----~ 93 (266)
T 3d1l_A 21 LATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-A-FAELLQGIVEGK-----R 93 (266)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-H-HHHHHHHHHTTC-----C
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-H-HHHHHHHHHhhc-----C
Confidence 799999999999999 89999999999888765 7777888989889999999999965 4 777775432222 3
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEe-cCCHHHHHHHHHHHHhcC
Q 022170 79 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMV-GGSEDAYQAAKPLFLSMG 157 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~-gg~~~~~~~~~~ll~~~~ 157 (301)
++++++++|+..|.+. +.+.+.+ . +..+..+|+++++... .+...+++ +++++.++.++++|+.+|
T Consensus 94 ~~~ivv~~s~~~~~~~--l~~~~~~------~----~~~~~~~~~~g~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~g 160 (266)
T 3d1l_A 94 EEALMVHTAGSIPMNV--WEGHVPH------Y----GVFYPMQTFSKQREVD-FKEIPFFIEASSTEDAAFLKAIASTLS 160 (266)
T ss_dssp TTCEEEECCTTSCGGG--STTTCSS------E----EEEEECCCC---CCCC-CTTCCEEEEESSHHHHHHHHHHHHTTC
T ss_pred CCcEEEECCCCCchHH--HHHHHHh------c----cCcCCceecCCCchhh-cCCCeEEEecCCHHHHHHHHHHHHhcC
Confidence 5689999998877532 3222211 1 1456677776644322 23334555 789999999999999999
Q ss_pred CCeEeeCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022170 158 KNTIYCGGAG---NGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 212 (301)
Q Consensus 158 ~~~~~~g~~g---~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~ 212 (301)
.+++++++.+ .....|+++|... .+..++|+ ++++.|++++++.+++..+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ea--l~~~~Gl~~~~~~~l~~~~~ 214 (266)
T 3d1l_A 161 NRVYDADSEQRKSLHLAAVFTCNFTN--HMYALAAE--LLKKYNLPFDVMLPLIDETA 214 (266)
T ss_dssp SCEEECCHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHTTCCGGGGHHHHHHHH
T ss_pred CcEEEeCHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHcCCCHHHHHHHHHHHH
Confidence 9999998754 5678899999853 34556675 67899999999999888764
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-18 Score=158.79 Aligned_cols=239 Identities=17% Similarity=0.156 Sum_probs=157.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CCC-------------CCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MGV-------------PTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~g~-------------~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||.+||.+|+++||+|++||+++++++.+.+ .|. +.+++++ .+++||+||+|||+
T Consensus 16 MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aDlVIeAVpe 94 (483)
T 3mog_A 16 MGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALAAADLVIEAASE 94 (483)
T ss_dssp HHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGGGCSEEEECCCC
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-HhcCCCEEEEcCCC
Confidence 8999999999999999999999999887653 232 3456664 67899999999998
Q ss_pred Cccchh-hhhcCCCccccCCCCCCCeEE-EEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHHHhhcc
Q 022170 57 SSHQVL-DVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAG 133 (301)
Q Consensus 57 ~~~~~~-~v~~~~~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~a~~g 133 (301)
+.+ ++ +++.+....+ .+++++ .++||+++. ++++.+.. .....+.+|++ +|+.
T Consensus 95 ~~~-vk~~v~~~l~~~~-----~~~~IlasntSti~i~---~ia~~~~~------p~~~ig~hf~~Pa~v~--------- 150 (483)
T 3mog_A 95 RLE-VKKALFAQLAEVC-----PPQTLLTTNTSSISIT---AIAAEIKN------PERVAGLHFFNPAPVM--------- 150 (483)
T ss_dssp CHH-HHHHHHHHHHHHS-----CTTCEEEECCSSSCHH---HHTTTSSS------GGGEEEEEECSSTTTC---------
T ss_pred cHH-HHHHHHHHHHHhh-----ccCcEEEecCCCCCHH---HHHHHccC------ccceEEeeecChhhhC---------
Confidence 765 44 5554433333 345666 578998886 34333321 11111356666 3332
Q ss_pred ceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 022170 134 TLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 210 (301)
Q Consensus 134 ~l~~~~gg---~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~ 210 (301)
.++.+++| +++.++.+.++++.+|+.++++++.. + +++||++.. .++|++.++++.++|++++.+++..
T Consensus 151 ~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~-G---fi~Nr~l~~----~~~Ea~~l~~~g~~~~~~id~a~~~ 222 (483)
T 3mog_A 151 KLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTP-G---FIVNRVARP----YYSEAWRALEEQVAAPEVIDAALRD 222 (483)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCT-T---TTHHHHTHH----HHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEEeccC-c---chHHHHHHH----HHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 56778887 78999999999999999999998732 2 788888874 6899999999999999999999987
Q ss_pred cCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHH--HHcCCCchHHHHHHHHHHHHHHCCCCCCchH
Q 022170 211 SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASA--KEVGVDCPLTSQAQDIYAKLCENGHDSKDFS 288 (301)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a--~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~ 288 (301)
+.+. ++ +|.. + -|+ ..++...+-.+.+.+.. ...-.+.|+.+...+.-+...+.|.|..+|.
T Consensus 223 ~~G~-p~----GP~~------l--~D~---~Gld~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~k~g~GfY~y~ 286 (483)
T 3mog_A 223 GAGF-PM----GPLE------L--TDL---IGQDVNFAVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWR 286 (483)
T ss_dssp TTCC-SS----CHHH------H--HHH---HCHHHHHHHHHHHHHHTTSCGGGCCCHHHHHHHHTTCCBGGGTBSSSBTT
T ss_pred cCCC-CC----CHHH------H--HHH---hchHHHHHHHHHHHHHhcCCCccCchHHHHHHHHCCCCceeCCCEeEECC
Confidence 6432 10 1100 0 010 12333333333332221 1111345666555554455567788888885
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.4e-17 Score=140.07 Aligned_cols=235 Identities=13% Similarity=0.068 Sum_probs=154.5
Q ss_pred CcHHHHHHHHhCC----CeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKAG----YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~G----~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||++||.+|.++| |+|++|||++++ .|+..+.++.++++++|+||+|+|+ .. +++++.+....+
T Consensus 15 mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~~-~~-~~~v~~~l~~~l---- 82 (262)
T 2rcy_A 15 MGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVKP-DI-AGSVLNNIKPYL---- 82 (262)
T ss_dssp HHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSCT-TT-HHHHHHHSGGGC----
T ss_pred HHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeCH-HH-HHHHHHHHHHhc----
Confidence 7999999999999 799999999887 4777788999999999999999994 55 888887644333
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHHhhccceEEEecC---CHHHHHHHHHH
Q 022170 77 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPL 152 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~l 152 (301)
+++.+++++++++++.. .+.+... .+ .+.++ ..|+.+ ..| .++++++ +++.++.++++
T Consensus 83 -~~~~vv~~~~gi~~~~l---~~~~~~~----~~----~v~~~p~~p~~~-----~~g-~~~~~~~~~~~~~~~~~~~~l 144 (262)
T 2rcy_A 83 -SSKLLISICGGLNIGKL---EEMVGSE----NK----IVWVMPNTPCLV-----GEG-SFIYCSNKNVNSTDKKYVNDI 144 (262)
T ss_dssp -TTCEEEECCSSCCHHHH---HHHHCTT----SE----EEEEECCGGGGG-----TCE-EEEEEECTTCCHHHHHHHHHH
T ss_pred -CCCEEEEECCCCCHHHH---HHHhCCC----Cc----EEEECCChHHHH-----cCC-eEEEEeCCCCCHHHHHHHHHH
Confidence 24467788899998643 3333320 00 02333 233332 346 5667666 68889999999
Q ss_pred HHhcCCCeEeeCCcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccc-cCCCCCCccc
Q 022170 153 FLSMGKNTIYCGGAGNGAAAKIC--NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSD-SYNPVPGVME 229 (301)
Q Consensus 153 l~~~~~~~~~~g~~g~a~~~k~~--~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 229 (301)
|+.+|. ++++++.......++. .|.+....+..+.|+ +++.|++++.+++++..+...++... .....+.+
T Consensus 145 l~~~G~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~al~~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 218 (262)
T 2rcy_A 145 FNSCGI-IHEIKEKDMDIATAISGCGPAYVYLFIESLIDA---GVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQ-- 218 (262)
T ss_dssp HHTSEE-EEECCGGGHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHH--
T ss_pred HHhCCC-EEEeCHHHccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH--
Confidence 999997 8889875444445443 355554444444443 68899999999888876532221110 00111111
Q ss_pred CCCCCCCC-CCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCC
Q 022170 230 GVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 281 (301)
Q Consensus 230 ~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 281 (301)
+.+.+ .++++.... ++..++.+++..+.+++.+.|+++.+.+
T Consensus 219 ---l~d~~~~~~~t~~~~-------l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 261 (262)
T 2rcy_A 219 ---LKDNIVSPGGITAVG-------LYSLEKNSFKYTVMNAVEAACEKSKAMG 261 (262)
T ss_dssp ---HHHHHCCTTSHHHHH-------HHHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHhcCCCChHHHHH-------HHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 12222 234443333 3334566888999999999999987654
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.6e-17 Score=143.57 Aligned_cols=181 Identities=16% Similarity=0.275 Sum_probs=125.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH-----------hCC------------------CCCCCCHHHHHhcCCEEE
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DMG------------------VPTKETPFEVAEASDVVI 51 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~-----------~~g------------------~~~~~s~~e~~~~adiVi 51 (301)
||.+||..|+++||+|++|||++++++.+. +.| +..++++++++++||+||
T Consensus 26 mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aD~Vi 105 (302)
T 1f0y_A 26 MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVV 105 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHHHHTTSCSEEE
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHHHhhcCCCEEE
Confidence 799999999999999999999998876542 233 334678888899999999
Q ss_pred EecCCCccch-hhhhcCCCccccCCCCCCCeEEE-EeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHH
Q 022170 52 TMLPSSSHQV-LDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLA 129 (301)
Q Consensus 52 ~~vp~~~~~~-~~v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~ 129 (301)
+|||++.+ + ++++.+....+ .++.+++ ++|++++. ++++.+.. .....+.+|++ |..
T Consensus 106 ~avp~~~~-~~~~v~~~l~~~~-----~~~~iv~s~ts~i~~~---~l~~~~~~------~~~~~g~h~~~-P~~----- 164 (302)
T 1f0y_A 106 EAIVENLK-VKNELFKRLDKFA-----AEHTIFASNTSSLQIT---SIANATTR------QDRFAGLHFFN-PVP----- 164 (302)
T ss_dssp ECCCSCHH-HHHHHHHHHTTTS-----CTTCEEEECCSSSCHH---HHHTTSSC------GGGEEEEEECS-STT-----
T ss_pred EcCcCcHH-HHHHHHHHHHhhC-----CCCeEEEECCCCCCHH---HHHHhcCC------cccEEEEecCC-Ccc-----
Confidence 99998754 4 34444333332 3455666 45666665 33333221 01011244443 221
Q ss_pred hhccceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022170 130 AEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 206 (301)
Q Consensus 130 a~~g~l~~~~gg---~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~ 206 (301)
.+.+..+++| +++.++.+.++++.+++.++++++. .+ ++++|++. ..++|++.++++.|++++++..
T Consensus 165 --~~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~-~g---~i~nr~l~----~~~~Ea~~l~~~g~~~~~~id~ 234 (302)
T 1f0y_A 165 --VMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDT-PG---FIVNRLLV----PYLMEAIRLYERGDASKEDIDT 234 (302)
T ss_dssp --TCCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSC-TT---TTHHHHHH----HHHHHHHHHHHTTSSCHHHHHH
T ss_pred --cCceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCc-cc---ccHHHHHH----HHHHHHHHHHHcCCCCHHHHHH
Confidence 1233445555 7899999999999999988888762 22 56667665 5689999999999999999999
Q ss_pred HHhhcC
Q 022170 207 ILNSSS 212 (301)
Q Consensus 207 ~~~~~~ 212 (301)
++..+.
T Consensus 235 ~~~~g~ 240 (302)
T 1f0y_A 235 AMKLGA 240 (302)
T ss_dssp HHHHHH
T ss_pred HHHhCC
Confidence 987653
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.1e-16 Score=138.02 Aligned_cols=165 Identities=15% Similarity=0.224 Sum_probs=129.8
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCCC--CCCCCHHH-HHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGV--PTKETPFE-VAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~--~~~~s~~e-~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||.+||..|.++|+ +|++|||++++.+.+.+.|+ ..++++++ ++++||+||+|||.. . +.+++.+....+
T Consensus 44 mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~-~-~~~vl~~l~~~l--- 118 (314)
T 3ggo_A 44 MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-T-FREIAKKLSYIL--- 118 (314)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGG-G-HHHHHHHHHHHS---
T ss_pred HHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHH-H-HHHHHHHHhhcc---
Confidence 79999999999999 99999999999999988887 34678888 899999999999955 4 777775533333
Q ss_pred CCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCC----HHHhh----ccceEEEec---CCH
Q 022170 76 NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGG----VLAAE----AGTLTFMVG---GSE 143 (301)
Q Consensus 76 ~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~----~~~a~----~g~l~~~~g---g~~ 143 (301)
.++++|+|++++.+...+.+.+.+.. .|+. .|++|+ +..+. .|..++++. +++
T Consensus 119 --~~~~iv~d~~Svk~~~~~~~~~~l~~-------------~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~ 183 (314)
T 3ggo_A 119 --SEDATVTDQGSVKGKLVYDLENILGK-------------RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDK 183 (314)
T ss_dssp --CTTCEEEECCSCCTHHHHHHHHHHGG-------------GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCH
T ss_pred --CCCcEEEECCCCcHHHHHHHHHhcCC-------------CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCH
Confidence 35689999999998877777766532 4555 687774 44333 566677774 578
Q ss_pred HHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHH
Q 022170 144 DAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSML 185 (301)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~ 185 (301)
+.++.++++|+.+|.+++++++......+.+++.+-......
T Consensus 184 ~~~~~v~~l~~~~G~~v~~~~~~~hD~~~a~~s~lph~~a~~ 225 (314)
T 3ggo_A 184 KRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFA 225 (314)
T ss_dssp HHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888888887666654433
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-16 Score=139.69 Aligned_cols=258 Identities=11% Similarity=0.110 Sum_probs=154.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CC--------------CCCCCHHHHHhcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GV--------------PTKETPFEVAEASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~--------------~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~ 65 (301)
||+.+|..|.++||+|++|+|++++.+.+.+. +. ..++++++++.++|+||+|+|.+. .++++
T Consensus 15 ~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~~--~~~~~ 92 (359)
T 1bg6_A 15 GGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVPAIH--HASIA 92 (359)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSCGGG--HHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCCchH--HHHHH
Confidence 69999999999999999999999999888765 21 245688888899999999999655 67777
Q ss_pred cCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe---cccCCC---HHHhh----ccce
Q 022170 66 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD---APVSGG---VLAAE----AGTL 135 (301)
Q Consensus 66 ~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~pv~g~---~~~a~----~g~l 135 (301)
......+ .+++++|++.++.+.+. ++.+.+.+. + ...+.|++ .|+.+. |.... .+.+
T Consensus 93 ~~l~~~l-----~~~~~vv~~~~~~~~~~-~~~~~l~~~------~-~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~~~ 159 (359)
T 1bg6_A 93 ANIASYI-----SEGQLIILNPGATGGAL-EFRKILREN------G-APEVTIGETSSMLFTCRSERPGQVTVNAIKGAM 159 (359)
T ss_dssp HHHGGGC-----CTTCEEEESSCCSSHHH-HHHHHHHHT------T-CCCCEEEEESSCSEEEECSSTTEEEEEEECSCE
T ss_pred HHHHHhC-----CCCCEEEEcCCCchHHH-HHHHHHHhc------C-CCCeEEEEecCCcEEEEeCCCCEEEEEEeecce
Confidence 5433333 34678888866555433 344544431 1 01234554 455432 21111 0121
Q ss_pred EEEe---cCCHHHHHHHHHHHHhcC--CCe-----------EeeCCc--chHHHH------HHH---HHHHHHHHHHHHH
Q 022170 136 TFMV---GGSEDAYQAAKPLFLSMG--KNT-----------IYCGGA--GNGAAA------KIC---NNLTMAVSMLGVS 188 (301)
Q Consensus 136 ~~~~---gg~~~~~~~~~~ll~~~~--~~~-----------~~~g~~--g~a~~~------k~~---~N~~~~~~~~~~~ 188 (301)
.+-. +++++.++.++++|..+. .++ ++.+.. +.+... .+. .+........++.
T Consensus 160 ~~g~~~~~~~~~~~~~l~~~~~~~~~~~di~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 1bg6_A 160 DFACLPAAKAGWALEQIGSVLPQYVAVENVLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSLAEKVDA 239 (359)
T ss_dssp EEEEESGGGHHHHHHHHTTTCTTEEECSCHHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHHHHHHHHHHH
T ss_pred EEEeccccccHHHHHHHHHHhhhcEEcCChHhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHHHHHHHHHHH
Confidence 1111 345556777777775542 110 000000 111111 111 2334677889999
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCCCcccc--ccCCCCCCcccCCCCCCCCCCCcchh--hHHHHH----HHHHHHHHHc
Q 022170 189 EALTLGQSLGISASTLTKILNSSSARCWSS--DSYNPVPGVMEGVPASRNYGGGFASK--LMAKDL----NLALASAKEV 260 (301)
Q Consensus 189 E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~kd~----~~~~~~a~~~ 260 (301)
|+..++++.|++++++.+.+......++.. ...+ .+.+. +|......++ .+.||+ ..+.++++++
T Consensus 240 E~~~va~a~G~~~~~~~~~~~~~~~~~~~~l~~~~~-~~sm~------~d~~~~~e~~~~~~~~D~~~~~g~~~~~a~~~ 312 (359)
T 1bg6_A 240 ERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQ-GNPAY------RGIAGPINLNTRYFFEDVSTGLVPLSELGRAV 312 (359)
T ss_dssp HHHHHHHTTTCCCCCHHHHC-------CCSHHHHHH-TCGGG------TTCBCCSSSCCHHHHHHHHTTHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHhCCCcccHHHHHh-cchhh------cCCCCCCCCCccceecCcCccHHHHHHHHHHc
Confidence 999999999999888888766543222210 0000 01111 1111111234 678998 7999999999
Q ss_pred CCCchHHHHHHHHHHHHHHC
Q 022170 261 GVDCPLTSQAQDIYAKLCEN 280 (301)
Q Consensus 261 g~~~p~~~~~~~~~~~a~~~ 280 (301)
|+++|+.+.++++++.....
T Consensus 313 gv~~P~~~~l~~~~~~~~~~ 332 (359)
T 1bg6_A 313 NVPTPLIDAVLDLISSLIDT 332 (359)
T ss_dssp TCCCHHHHHHHHHHHHHTTC
T ss_pred CCCchHHHHHHHHHHHHHCC
Confidence 99999999999999876554
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-15 Score=128.48 Aligned_cols=187 Identities=14% Similarity=0.182 Sum_probs=127.8
Q ss_pred CcHHHHHHHHhCCC----eEEEEcCChhhHHHHHh-CCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAGY----KMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G~----~V~~~dr~~~~~~~l~~-~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||.+|+.+|.++|| +|++|||++++.+.+.+ .|+..+.++.++++++|+||+|+| +.. +++++.+....+
T Consensus 13 mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~-~~~-~~~v~~~l~~~l--- 87 (247)
T 3gt0_A 13 MGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIK-PDL-YASIINEIKEII--- 87 (247)
T ss_dssp HHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSC-TTT-HHHHC---CCSS---
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeC-HHH-HHHHHHHHHhhc---
Confidence 79999999999999 99999999999999875 488888999999999999999998 455 889886654433
Q ss_pred CCCCCeEEE-EeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE----ecccCCCHHHhhccceEEEe--cCCHHHHHH
Q 022170 76 NSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML----DAPVSGGVLAAEAGTLTFMV--GGSEDAYQA 148 (301)
Q Consensus 76 ~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~pv~g~~~~a~~g~l~~~~--gg~~~~~~~ 148 (301)
.+++++| ++++++++. +.+.+.. +..++ ..|+.. ..|...++. +++++.++.
T Consensus 88 --~~~~~vvs~~~gi~~~~---l~~~~~~-----------~~~~v~~~p~~p~~~-----~~g~~~~~~~~~~~~~~~~~ 146 (247)
T 3gt0_A 88 --KNDAIIVTIAAGKSIES---TENAFNK-----------KVKVVRVMPNTPALV-----GEGMSALCPNEMVTEKDLED 146 (247)
T ss_dssp --CTTCEEEECSCCSCHHH---HHHHHCS-----------CCEEEEEECCGGGGG-----TCEEEEEEECTTCCHHHHHH
T ss_pred --CCCCEEEEecCCCCHHH---HHHHhCC-----------CCcEEEEeCChHHHH-----cCceEEEEeCCCCCHHHHHH
Confidence 3455666 557777653 3344321 01222 334333 335544444 368899999
Q ss_pred HHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHhhcCCCcc
Q 022170 149 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTL-GQSLGISASTLTKILNSSSARCW 216 (301)
Q Consensus 149 ~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l-~~~~G~~~~~~~~~~~~~~~~~~ 216 (301)
++++|+.+|. ++++++...-....+....- ..+..+.|++.. +.+.|+|++++++++..+...++
T Consensus 147 ~~~l~~~~G~-~~~~~e~~~d~~~a~~g~gp--a~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~~gs~ 212 (247)
T 3gt0_A 147 VLNIFNSFGQ-TEIVSEKLMDVVTSVSGSSP--AYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSA 212 (247)
T ss_dssp HHHHHGGGEE-EEECCGGGHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-EEEeCHHHccHHHHHhccHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 9999999998 66776532222222222111 223456677666 88999999999999987754433
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-16 Score=137.49 Aligned_cols=183 Identities=16% Similarity=0.182 Sum_probs=129.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----------C--------------CCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----------G--------------VPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----------g--------------~~~~~s~~e~~~~adiVi~~vp 55 (301)
||+++|..|+++||+|++|||++++++.+.+. | +..++++.+++++||+||+|+|
T Consensus 15 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi~av~ 94 (283)
T 4e12_A 15 LGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVKDADLVIEAVP 94 (283)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTTTCSEEEECCC
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhccCCEEEEecc
Confidence 79999999999999999999999988776543 1 4567889999999999999999
Q ss_pred CCccchhhhhcCCCccccCCCCCCCeEEEE-eCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccc
Q 022170 56 SSSHQVLDVYNGPNGLLQGGNSVRPQLLID-SSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 134 (301)
Q Consensus 56 ~~~~~~~~v~~~~~~~l~~~~~~~~~ivid-~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~ 134 (301)
++.+..++++.+....+ .++.++++ +|+.++. ++++.+... ....+.+|.+++ ..+.
T Consensus 95 ~~~~~~~~v~~~l~~~~-----~~~~il~s~tS~~~~~---~la~~~~~~------~~~ig~h~~~p~--------~~~~ 152 (283)
T 4e12_A 95 ESLDLKRDIYTKLGELA-----PAKTIFATNSSTLLPS---DLVGYTGRG------DKFLALHFANHV--------WVNN 152 (283)
T ss_dssp SCHHHHHHHHHHHHHHS-----CTTCEEEECCSSSCHH---HHHHHHSCG------GGEEEEEECSST--------TTSC
T ss_pred CcHHHHHHHHHHHHhhC-----CCCcEEEECCCCCCHH---HHHhhcCCC------cceEEEccCCCc--------ccCc
Confidence 87431445554433332 35678875 4555543 445544321 111124444321 2344
Q ss_pred eEEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022170 135 LTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 211 (301)
Q Consensus 135 l~~~~gg---~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~ 211 (301)
++.++.+ +++.++.+.++++.+++.+++++....+. ++|+++. ..++|++.++++.+++++++.+++..+
T Consensus 153 lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~---i~nr~~~----~~~~ea~~l~~~g~~~~~~id~~~~~~ 225 (283)
T 4e12_A 153 TAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGY---VLNSLLV----PLLDAAAELLVDGIADPETIDKTWRIG 225 (283)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTT---THHHHHH----HHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCE---EehHHHH----HHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 5666666 68999999999999999999995434443 4556655 467999999999999999999999866
Q ss_pred C
Q 022170 212 S 212 (301)
Q Consensus 212 ~ 212 (301)
.
T Consensus 226 ~ 226 (283)
T 4e12_A 226 T 226 (283)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-16 Score=132.53 Aligned_cols=162 Identities=15% Similarity=0.238 Sum_probs=124.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-C-------CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-G-------VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g-------~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||+.++..|.++||+|++|+|++++.+.+.+. + +. ..++.++++++|+||+|+|. .. +++++.+....+
T Consensus 12 ~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~-~~-~~~~~~~l~~~~ 88 (212)
T 1jay_A 12 LGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPW-EH-AIDTARDLKNIL 88 (212)
T ss_dssp HHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCH-HH-HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCCh-hh-HHHHHHHHHHHc
Confidence 68999999999999999999999988776543 2 33 35788888999999999995 44 677776432222
Q ss_pred cCCCCCCCeEEEEeCC-CC-----------HHHHHHHHHHHhhchhhhccCCCCCceEEec--ccCCCHHHh--hccceE
Q 022170 73 QGGNSVRPQLLIDSST-ID-----------PQTSRNISAAVSNCILKEKKDSWENPVMLDA--PVSGGVLAA--EAGTLT 136 (301)
Q Consensus 73 ~~~~~~~~~ivid~st-~~-----------p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--pv~g~~~~a--~~g~l~ 136 (301)
++++++++++ +. |...+++.+.+.. ..++.+ |+.+..... ..+.++
T Consensus 89 ------~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~~ 150 (212)
T 1jay_A 89 ------REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES------------EKVVSALHTIPAARFANLDEKFDWD 150 (212)
T ss_dssp ------TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC------------SCEEECCTTCCHHHHHCTTCCCCEE
T ss_pred ------CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC------------CeEEEEccchHHHHhhCcCCCCCcc
Confidence 2579999987 33 2346677666542 467776 665554443 556778
Q ss_pred EEecCC-HHHHHHHHHHHHhc-CCCeEeeCCcchHHHHHHHHHHHHHHH
Q 022170 137 FMVGGS-EDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKICNNLTMAVS 183 (301)
Q Consensus 137 ~~~gg~-~~~~~~~~~ll~~~-~~~~~~~g~~g~a~~~k~~~N~~~~~~ 183 (301)
++++|+ ++.++.++++|+.+ |.+++++++.+.+..+|.++|++....
T Consensus 151 ~~~~g~~~~~~~~v~~l~~~~~G~~~~~~~~~~~a~~~k~~~~~~~~~~ 199 (212)
T 1jay_A 151 VPVCGDDDESKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPLILNIM 199 (212)
T ss_dssp EEEEESCHHHHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCceeccchhHHHHhcchHHHHHHHH
Confidence 888886 88999999999999 999999999999999999999988654
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=131.87 Aligned_cols=167 Identities=17% Similarity=0.256 Sum_probs=128.8
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCCCC--CCCCHHHHHh-cCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP--TKETPFEVAE-ASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~~--~~~s~~e~~~-~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||+++|..|.++|| +|++|||++++.+.+.+.|+. .++++.++++ ++|+||+|+|.+ . ..+++.+....+
T Consensus 12 mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~-~~~v~~~l~~~l--- 86 (281)
T 2g5c_A 12 MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-T-FREIAKKLSYIL--- 86 (281)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-H-HHHHHHHHHHHS---
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-H-HHHHHHHHHhhC---
Confidence 79999999999999 999999999999888888875 3567888888 999999999955 4 677775432222
Q ss_pred CCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCC----CHHHhh----ccceEEEe---cCCH
Q 022170 76 NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSG----GVLAAE----AGTLTFMV---GGSE 143 (301)
Q Consensus 76 ~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g----~~~~a~----~g~l~~~~---gg~~ 143 (301)
.++.++++++++.+...+.+.+.+.+ .+++ .|+++ +|..+. .+..++++ ++++
T Consensus 87 --~~~~iv~~~~~~~~~~~~~l~~~l~~-------------~~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~ 151 (281)
T 2g5c_A 87 --SEDATVTDQGSVKGKLVYDLENILGK-------------RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDK 151 (281)
T ss_dssp --CTTCEEEECCSCCTHHHHHHHHHHGG-------------GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCH
T ss_pred --CCCcEEEECCCCcHHHHHHHHHhccc-------------cceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCH
Confidence 34679999999988877777766642 1444 46555 344443 56657777 6788
Q ss_pred HHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHH
Q 022170 144 DAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGV 187 (301)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~ 187 (301)
+.++.++++|+.++.+++++++......+|++.|........++
T Consensus 152 ~~~~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~~~~ 195 (281)
T 2g5c_A 152 KRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALV 195 (281)
T ss_dssp HHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988889887788999999988876544433
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=140.78 Aligned_cols=177 Identities=15% Similarity=0.148 Sum_probs=123.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH--------HHHHhCCC-------------CCCCCHHHHHhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM--------KMFSDMGV-------------PTKETPFEVAEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~--------~~l~~~g~-------------~~~~s~~e~~~~adiVi~~vp~~~~ 59 (301)
||++||.+|+++||+|++||+++++. +.+.+.|. +.+++++ ++++||+||+|||++.+
T Consensus 65 MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~ 143 (460)
T 3k6j_A 65 MGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMK 143 (460)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHH
T ss_pred HHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHH
Confidence 89999999999999999999999843 23444442 3466775 68899999999998765
Q ss_pred chhh-hhcCCCccccCCCCCCCeEEE-EeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEE
Q 022170 60 QVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTF 137 (301)
Q Consensus 60 ~~~~-v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~ 137 (301)
++. ++.+....+ +++++++ ++||+++. ++++.+.+ +....+.+|++ |+. ...++-
T Consensus 144 -vk~~v~~~l~~~~-----~~~aIlasnTSsl~i~---~ia~~~~~------p~r~iG~Hffn-Pv~-------~m~LvE 200 (460)
T 3k6j_A 144 -LKKELFANLENIC-----KSTCIFGTNTSSLDLN---EISSVLRD------PSNLVGIHFFN-PAN-------VIRLVE 200 (460)
T ss_dssp -HHHHHHHHHHTTS-----CTTCEEEECCSSSCHH---HHHTTSSS------GGGEEEEECCS-STT-------TCCEEE
T ss_pred -HHHHHHHHHHhhC-----CCCCEEEecCCChhHH---HHHHhccC------CcceEEEEecc-hhh-------hCCEEE
Confidence 554 443333333 3566775 55666664 44443321 11111256666 332 123344
Q ss_pred EecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022170 138 MVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 209 (301)
Q Consensus 138 ~~gg---~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~ 209 (301)
++.| ++++++++.++++.+++.++++++ ..+. ++|+++. ..++|++.++++.|++++++.+++.
T Consensus 201 Iv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d-~pGf---i~Nril~----~~~~EA~~l~~~~Ga~~e~ID~a~~ 267 (460)
T 3k6j_A 201 IIYGSHTSSQAIATAFQACESIKKLPVLVGN-CKSF---VFNRLLH----VYFDQSQKLMYEYGYLPHQIDKIIT 267 (460)
T ss_dssp EECCSSCCHHHHHHHHHHHHHTTCEEEEESS-CCHH---HHHHHHH----HHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHhCCEEEEEec-ccHH---HHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4444 789999999999999999999987 3443 5666666 4579999999999999999999986
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=135.82 Aligned_cols=164 Identities=11% Similarity=0.087 Sum_probs=127.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhc----CCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA----SDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~----adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||++||..|.++||+|++|||++++.+.+.+.|+..+.++.+++++ +|+||+|+|. .. +.+++.+...+
T Consensus 19 mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~-~~~vl~~l~~~----- 91 (341)
T 3ktd_A 19 IGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TA-IDSLLDAVHTH----- 91 (341)
T ss_dssp HHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HH-HHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HH-HHHHHHHHHcc-----
Confidence 7999999999999999999999999999989999888899887764 7999999994 45 78888653322
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHH-Hh-------hccceEEEecC---CHH
Q 022170 77 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVL-AA-------EAGTLTFMVGG---SED 144 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~-~a-------~~g~l~~~~gg---~~~ 144 (301)
.++.+|+|++++++...+.+.+... +..|+. .|++|++. .. ..+..++++.+ +++
T Consensus 92 -~~~~iv~Dv~Svk~~i~~~~~~~~~------------~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e 158 (341)
T 3ktd_A 92 -APNNGFTDVVSVKTAVYDAVKARNM------------QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGT 158 (341)
T ss_dssp -CTTCCEEECCSCSHHHHHHHHHTTC------------GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSC
T ss_pred -CCCCEEEEcCCCChHHHHHHHHhCC------------CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChh
Confidence 3568999999999987777655432 157887 79998652 11 13555777765 456
Q ss_pred --------HHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHH
Q 022170 145 --------AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSM 184 (301)
Q Consensus 145 --------~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~ 184 (301)
.+++++++++.+|.+++++++...-..+.+++++-..+..
T Consensus 159 ~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia~ 206 (341)
T 3ktd_A 159 DINSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILAE 206 (341)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHHH
Confidence 8899999999999999999887777888887776664443
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.4e-15 Score=127.17 Aligned_cols=184 Identities=13% Similarity=0.171 Sum_probs=132.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC--CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~--~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||+++|..|.+.||+|++|||++++.+.+.+.|.. .+.++.++ .++|+||+|+|.+ . +.+++.+....+ .
T Consensus 11 ~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~-~-~~~~~~~l~~~~-----~ 82 (279)
T 2f1k_A 11 IGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQ-L-ILPTLEKLIPHL-----S 82 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHH-H-HHHHHHHHGGGS-----C
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHH-H-HHHHHHHHHhhC-----C
Confidence 79999999999999999999999999988887764 45678888 8999999999954 4 788876533332 3
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEec-ccCC----CHHHhh----ccceEEEec---CCHHHH
Q 022170 79 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSG----GVLAAE----AGTLTFMVG---GSEDAY 146 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-pv~g----~~~~a~----~g~l~~~~g---g~~~~~ 146 (301)
++++|++++++.+...+.+.+.+. ++++. |++| +|..+. .+..++++. ++++..
T Consensus 83 ~~~~vv~~~~~~~~~~~~~~~~~~--------------~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~ 148 (279)
T 2f1k_A 83 PTAIVTDVASVKTAIAEPASQLWS--------------GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQL 148 (279)
T ss_dssp TTCEEEECCSCCHHHHHHHHHHST--------------TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHH
T ss_pred CCCEEEECCCCcHHHHHHHHHHhC--------------CEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHH
Confidence 567999999988877666554331 34443 6664 343332 344455553 478899
Q ss_pred HHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHhh
Q 022170 147 QAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS--ASTLTKILNS 210 (301)
Q Consensus 147 ~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~--~~~~~~~~~~ 210 (301)
+.++++|+.++.+++++++.......|++.|...+... ++.++ +...|.+ .+....+...
T Consensus 149 ~~v~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~-al~~~---~~~~~~~~~~~~~~~l~~~ 210 (279)
T 2f1k_A 149 ACLRSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSA-ALIQA---CAGEKDGDILKLAQNLASS 210 (279)
T ss_dssp HHHHHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHH-HHHHH---HHTCSCHHHHHHHHHHCCH
T ss_pred HHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHH-HHHHH---HHhcccccchhHHHhhcCC
Confidence 99999999999989999888889999999997554443 33333 3345654 4555555543
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.8e-16 Score=150.93 Aligned_cols=236 Identities=16% Similarity=0.139 Sum_probs=146.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCC-------------CCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||++||.+|+++||+|++||+++++++.. .+.| ++.++++ +++++||+||+|||+
T Consensus 325 MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~aDlVIeaV~e 403 (715)
T 1wdk_A 325 MGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGNVDLVVEAVVE 403 (715)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGGCSEEEECCCS
T ss_pred hhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHCCCCEEEEcCCC
Confidence 89999999999999999999999987753 3334 2345666 678899999999998
Q ss_pred Cccchhh-hhcCCCccccCCCCCCCeEEE-EeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccc
Q 022170 57 SSHQVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 134 (301)
Q Consensus 57 ~~~~~~~-v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~ 134 (301)
+.+ ++. ++.+....+ .++++++ ++||+++. ++++.+.. .....+.||++ |+.. ..
T Consensus 404 ~~~-vk~~v~~~l~~~~-----~~~~IlasntStl~i~---~la~~~~~------~~~~ig~hf~~-P~~~-------~~ 460 (715)
T 1wdk_A 404 NPK-VKQAVLAEVENHV-----REDAILASNTSTISIS---LLAKALKR------PENFVGMHFFN-PVHM-------MP 460 (715)
T ss_dssp CHH-HHHHHHHHHHTTS-----CTTCEEEECCSSSCHH---HHGGGCSC------GGGEEEEECCS-STTT-------CC
T ss_pred CHH-HHHHHHHHHHhhC-----CCCeEEEeCCCCCCHH---HHHHHhcC------ccceEEEEccC-Cccc-------Cc
Confidence 876 554 443322222 3456666 45666665 34333321 11111255555 3322 23
Q ss_pred eEEEecC---CHHHHHHHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 022170 135 LTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 210 (301)
Q Consensus 135 l~~~~gg---~~~~~~~~~~ll~~~~~~~~~~g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~ 210 (301)
+..++.| ++++++.+.++++.+|+.++++++ .|. ++|+++. ..++|++.++++ |+|++++.+++ .
T Consensus 461 lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf-----i~Nril~----~~~~Ea~~l~~~-G~~~~~id~~~-~ 529 (715)
T 1wdk_A 461 LVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGF-----LVNRVLF----PYFGGFAKLVSA-GVDFVRIDKVM-E 529 (715)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTTT-----THHHHHH----HHHHHHHHHHHT-TCCHHHHHHHH-H
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHhCCEeEEEcCCCCh-----hhhHHHH----HHHHHHHHHHHC-CCCHHHHHHHH-H
Confidence 3444444 789999999999999999999987 342 4555554 568999999998 99999999998 4
Q ss_pred cCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHHHHCCCCCCch
Q 022170 211 SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDC--PLTSQAQDIYAKLCENGHDSKDF 287 (301)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~--p~~~~~~~~~~~a~~~g~g~~d~ 287 (301)
+.+. + .+|.. . -|+ ..++...+-.+.+.+...+.-.+. |+++...+.-+...+.|.|..+|
T Consensus 530 ~~G~-p----~Gp~~------l--~D~---vGld~~~~i~~~~~~~~~~~~~~~~~~~l~~~v~~g~lG~k~g~GfY~y 592 (715)
T 1wdk_A 530 KFGW-P----MGPAY------L--MDV---VGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAY 592 (715)
T ss_dssp HHTC-S----SCHHH------H--HHH---HCHHHHHHHHHHHHHHCHHHHCCSSCCHHHHHHHTTCCBTTTTBSSSEE
T ss_pred HcCC-C----CCHHH------H--HHH---hhHHHHHHHHHHHHHhcCCccCCChHHHHHHHHhCchhhhcCCcEEEec
Confidence 4321 1 11100 0 011 124444444444433322222233 56665555444455667777776
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-15 Score=148.00 Aligned_cols=237 Identities=14% Similarity=0.110 Sum_probs=137.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC-------------CCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||++||.+|+++||+|++||+++++++...+ .| ++.++++ +++++||+||+|||+
T Consensus 323 MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~aDlVIeaVpe 401 (725)
T 2wtb_A 323 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRDVDMVIEAVIE 401 (725)
T ss_dssp HHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTTCSEEEECCCS
T ss_pred hhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCCCCEEEEcCcC
Confidence 8999999999999999999999998765422 23 2345566 578899999999998
Q ss_pred Cccchhhh-hcCCCccccCCCCCCCeEEE-EeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccc
Q 022170 57 SSHQVLDV-YNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 134 (301)
Q Consensus 57 ~~~~~~~v-~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~ 134 (301)
+.+ ++.. +.+....+ +++.+++ ++||+++.+ +++.+.. .....+.||++ |+.. ..
T Consensus 402 ~~~-vk~~v~~~l~~~~-----~~~~IlasntStl~i~~---la~~~~~------p~~~iG~hf~~-P~~~-------~~ 458 (725)
T 2wtb_A 402 NIS-LKQQIFADLEKYC-----PQHCILASNTSTIDLNK---IGERTKS------QDRIVGAHFFS-PAHI-------MP 458 (725)
T ss_dssp CHH-HHHHHHHHHHHHS-----CTTCEEEECCSSSCHHH---HTTTCSC------TTTEEEEEECS-STTT-------CC
T ss_pred CHH-HHHHHHHHHHhhC-----CCCcEEEeCCCCCCHHH---HHHHhcC------CCCEEEecCCC-Cccc-------Cc
Confidence 876 5444 33322232 3455664 456666653 3332211 11112356666 3322 22
Q ss_pred eEEEecC---CHHHHHHHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 022170 135 LTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 210 (301)
Q Consensus 135 l~~~~gg---~~~~~~~~~~ll~~~~~~~~~~g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~ 210 (301)
+..++.| ++++++.+.++++.+++.++++++ .|. ++|+++. ..++|++.++++ |++++++.+++ .
T Consensus 459 lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf-----i~Nril~----~~~~Ea~~l~~~-G~~~e~id~~~-~ 527 (725)
T 2wtb_A 459 LLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGF-----AVNRMFF----PYTQAAMFLVEC-GADPYLIDRAI-S 527 (725)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESSTTT-----THHHHHH----HHHHHHHHHHHT-TCCHHHHHHHH-H
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHhCCEEEEECCCccH-----HHHHHHH----HHHHHHHHHHHC-CCCHHHHHHHH-H
Confidence 4444554 889999999999999999999987 343 4555554 468999999998 99999999998 5
Q ss_pred cCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchH
Q 022170 211 SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFS 288 (301)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~ 288 (301)
+.+. + .+|.. + -|+ ..++...+-.+.+.+...+....+|+++...+.-+...+.|.|..+|.
T Consensus 528 ~~g~-p----~Gp~~------l--~D~---vGld~~~~i~~~~~~~~~~~~~~~~~l~~~v~~g~lG~k~g~GfY~y~ 589 (725)
T 2wtb_A 528 KFGM-P----MGPFR------L--CDL---VGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGFYLYD 589 (725)
T ss_dssp HHTC-S----SCHHH------H--HHH---HCHHHHHHHHHHHHHHSGGGCCCCTHHHHHHTTC--------------
T ss_pred HcCC-C----CCHHH------H--HHH---hchHHHHHHHHHHHHhcCCccCChHHHHHHHHCCCceecCCceeEeCC
Confidence 4321 1 11100 0 011 124444444444443322221222667666665666677788888773
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.1e-15 Score=130.17 Aligned_cols=171 Identities=16% Similarity=0.182 Sum_probs=124.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||+++|..|.+.||+|++|||+++. ++.+++.++|+||+|||.+. +.+++.+....+ .++
T Consensus 33 mG~~la~~l~~~G~~V~~~~~~~~~-------------~~~~~~~~aDvVilavp~~~--~~~vl~~l~~~l-----~~~ 92 (298)
T 2pv7_A 33 LGGLFARYLRASGYPISILDREDWA-------------VAESILANADVVIVSVPINL--TLETIERLKPYL-----TEN 92 (298)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTCGG-------------GHHHHHTTCSEEEECSCGGG--HHHHHHHHGGGC-----CTT
T ss_pred HHHHHHHHHHhCCCeEEEEECCccc-------------CHHHHhcCCCEEEEeCCHHH--HHHHHHHHHhhc-----CCC
Confidence 7999999999999999999998752 57788899999999999544 788886543333 356
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHHHhhccceEEEecC-CHHHHHHHHHHHHhcCC
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGK 158 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~a~~g~l~~~~gg-~~~~~~~~~~ll~~~~~ 158 (301)
++|+|++++.....+.+.+... ..++. .|++|++.....+..++++.+ +++.++.++++|+.+|.
T Consensus 93 ~iv~~~~svk~~~~~~~~~~~~-------------~~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~l~~~~G~ 159 (298)
T 2pv7_A 93 MLLADLTSVKREPLAKMLEVHT-------------GAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGA 159 (298)
T ss_dssp SEEEECCSCCHHHHHHHHHHCS-------------SEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTC
T ss_pred cEEEECCCCCcHHHHHHHHhcC-------------CCEEeeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHHHHHHcCC
Confidence 7999999998876665544321 35665 588876654545655666655 68889999999999999
Q ss_pred CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022170 159 NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 208 (301)
Q Consensus 159 ~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 208 (301)
+++++++......++++.+........++ +++ + ..|++.+..+.+.
T Consensus 160 ~~~~~~~~~~d~~~a~~~~~p~~~a~~l~-~~l--~-~~g~~~~~~~~la 205 (298)
T 2pv7_A 160 KIYQTNATEHDHNMTYIQALRHFSTFANG-LHL--S-KQPINLANLLALS 205 (298)
T ss_dssp EEEECCHHHHHHHHHHHTHHHHHHHHHHH-HHH--T-TSSCCHHHHHHTC
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHH-HHH--H-hcCCCHHHHHhhc
Confidence 88888877778888888887665433322 222 1 3677766555443
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.6e-15 Score=127.87 Aligned_cols=243 Identities=15% Similarity=0.159 Sum_probs=155.4
Q ss_pred CcHHHHHHHHhCCC---eEEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcc-ccCC
Q 022170 1 MGFRMASNLMKAGY---KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGL-LQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G~---~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~-l~~~ 75 (301)
||.+|+..|.++|| +|++|||++++.+.+.+. |+..+.+..++++++|+||+||| +.. +++++.+.... +.
T Consensus 14 mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~-p~~-~~~vl~~l~~~~l~-- 89 (280)
T 3tri_A 14 MARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVK-PHQ-IKMVCEELKDILSE-- 89 (280)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSC-GGG-HHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeC-HHH-HHHHHHHHHhhccC--
Confidence 79999999999999 999999999999999886 88888899999999999999998 455 88888765544 42
Q ss_pred CCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHHHhhccceEEEecC---CHHHHHHHH
Q 022170 76 NSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGTLTFMVGG---SEDAYQAAK 150 (301)
Q Consensus 76 ~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~ 150 (301)
+++++|.+ ++++.. .+.+.+.. +..++- .|. .|.....|. +.++.+ +++.++.++
T Consensus 90 ---~~~iiiS~~agi~~~---~l~~~l~~-----------~~~vvr~mPn--~p~~v~~g~-~~l~~~~~~~~~~~~~v~ 149 (280)
T 3tri_A 90 ---TKILVISLAVGVTTP---LIEKWLGK-----------ASRIVRAMPN--TPSSVRAGA-TGLFANETVDKDQKNLAE 149 (280)
T ss_dssp ---TTCEEEECCTTCCHH---HHHHHHTC-----------CSSEEEEECC--GGGGGTCEE-EEEECCTTSCHHHHHHHH
T ss_pred ---CCeEEEEecCCCCHH---HHHHHcCC-----------CCeEEEEecC--ChHHhcCcc-EEEEeCCCCCHHHHHHHH
Confidence 34466654 556654 44455432 012222 232 233333333 444544 578999999
Q ss_pred HHHHhcCCCeEeeCC-c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccc-cCCCCCC
Q 022170 151 PLFLSMGKNTIYCGG-A--GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSD-SYNPVPG 226 (301)
Q Consensus 151 ~ll~~~~~~~~~~g~-~--g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 226 (301)
++|+.+|. ++++.+ . ....++.-..+.+.+..+..+.|+ +.+.|+++++..+++..+...+..+- ....-|.
T Consensus 150 ~l~~~iG~-~~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a---~v~~Gl~~~~a~~l~~~t~~G~a~~~~~~~~~p~ 225 (280)
T 3tri_A 150 SIMRAVGL-VIWVSSEDQIEKIAALSGSGPAYIFLIMEALQEA---AEQLGLTKETAELLTEQTVLGAARMALETEQSVV 225 (280)
T ss_dssp HHHGGGEE-EEECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHCCC-eEEECCHHHhhHHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 99999997 555643 2 222222222344555555555555 56899999999998876532111110 0000011
Q ss_pred cccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCC
Q 022170 227 VMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGH 282 (301)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~ 282 (301)
.+ .++-.+|+.+. ...++..++.|+...+.+++.+.++++.+.|.
T Consensus 226 ~l----~~~v~spgGtT-------~~~l~~le~~g~~~~~~~av~aa~~r~~el~~ 270 (280)
T 3tri_A 226 QL----RQFVTSPGGTT-------EQAIKVLESGNLRELFIKALTAAVNRAKELSK 270 (280)
T ss_dssp HH----HHHHCCTTSHH-------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HH----HHhccCCChHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHHHHH
Confidence 11 11222333322 23566668889999999999999999877653
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.3e-15 Score=123.91 Aligned_cols=157 Identities=19% Similarity=0.230 Sum_probs=110.8
Q ss_pred CcHHHHHHHHhCCCeEEE-EcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAV-HDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~-~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||+++|..|.++||+|++ |||++++.+.+.+. |.....+..+.++++|+||+|+|. .. +++++..... +
T Consensus 34 mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~-~~~v~~~l~~-~------ 104 (220)
T 4huj_A 34 IGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DS-IADIVTQVSD-W------ 104 (220)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GG-HHHHHTTCSC-C------
T ss_pred HHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HH-HHHHHHHhhc-c------
Confidence 799999999999999999 99999999887654 766666777778999999999994 55 8888876433 2
Q ss_pred CCeEEEEeCCCCH------------HHHHHHHHHHhhchhhhccCCCCCceEEecccCC-CHHHhhccceEEEecCCHHH
Q 022170 79 RPQLLIDSSTIDP------------QTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG-GVLAAEAGTLTFMVGGSEDA 145 (301)
Q Consensus 79 ~~~ivid~st~~p------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g-~~~~a~~g~l~~~~gg~~~~ 145 (301)
+++++|++++..+ .+.+.+.+.+....+. . .+.++.++++. ++.....+...++.|.+++.
T Consensus 105 ~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~vv--~----~~~~~~~~v~~~g~~~~~~~~~v~~~g~~~~~ 178 (220)
T 4huj_A 105 GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKVV--K----AFNTLPAAVLAADPDKGTGSRVLFLSGNHSDA 178 (220)
T ss_dssp TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEEE--E----ESCSSCHHHHTSCSBCSSCEEEEEEEESCHHH
T ss_pred CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCEE--E----CCCCCCHHHhhhCcccCCCCeeEEEeCCCHHH
Confidence 3579999986542 1556666665421000 0 01122334443 33222223445555668899
Q ss_pred HHHHHHHHHhcCCCeEeeCCcchHHHH
Q 022170 146 YQAAKPLFLSMGKNTIYCGGAGNGAAA 172 (301)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~g~~g~a~~~ 172 (301)
.+.++++|+.+|.+++++|+++.+..+
T Consensus 179 ~~~v~~l~~~~G~~~~~~G~l~~a~~~ 205 (220)
T 4huj_A 179 NRQVAELISSLGFAPVDLGTLAASGPI 205 (220)
T ss_dssp HHHHHHHHHHTTCEEEECCSHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEeeCChhhcchh
Confidence 999999999999999999998777554
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-16 Score=129.05 Aligned_cols=151 Identities=19% Similarity=0.245 Sum_probs=105.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.++|.+|.+.|++|++|+|+++ .+.+...|+... ++.++++.+|+||+|+|.. + +++++ + +.. ..++
T Consensus 30 mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~~-~-~~~v~-~---l~~---~~~~ 98 (201)
T 2yjz_A 30 FGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHRE-H-YDFLA-E---LAD---SLKG 98 (201)
Confidence 899999999999999999999987 556665677665 7888889999999999964 4 77776 2 221 1246
Q ss_pred eEEEEeCCCCHHH------HHHHHHHHhhchhhhccCCCCCceEEec-ccCCCHHHhhccce-----EEEecCCHHHHHH
Q 022170 81 QLLIDSSTIDPQT------SRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEAGTL-----TFMVGGSEDAYQA 148 (301)
Q Consensus 81 ~ivid~st~~p~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~-pv~g~~~~a~~g~l-----~~~~gg~~~~~~~ 148 (301)
+++|++++..|.. .+.+.+.+.. ...+.+ |..+. .....|.+ .+++|++++.++.
T Consensus 99 ~ivI~~~~G~~~~~~~~~~~~~l~~~~~~------------~~vvra~~n~~a-~~~~~g~l~g~~~~~~~g~~~~~~~~ 165 (201)
T 2yjz_A 99 RVLIDVSNNQKMNQYPESNAEYLAQLVPG------------AHVVKAFNTISA-WALQSGTLDASRQVFVCGNDSKAKDR 165 (201)
Confidence 7999999887732 2222222211 001100 00000 01112332 5777888889999
Q ss_pred HHHHHHhcCCCeEeeCCcchHHHHHHH
Q 022170 149 AKPLFLSMGKNTIYCGGAGNGAAAKIC 175 (301)
Q Consensus 149 ~~~ll~~~~~~~~~~g~~g~a~~~k~~ 175 (301)
++++|+.+|.+++++|++|.+..+|.+
T Consensus 166 v~~ll~~~G~~~~~~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 166 VMDIARTLGLTPLDQGSLVAAKEIENY 192 (201)
Confidence 999999999999999999999999865
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.5e-15 Score=128.58 Aligned_cols=179 Identities=15% Similarity=0.154 Sum_probs=120.9
Q ss_pred CcHHHHHHHHhCCCeE-EEEcCChhhHHHHHh-CCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKM-AVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V-~~~dr~~~~~~~l~~-~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||.+|+..|.++ |+| .+|||++++.+.+.+ .|. .+.+++++++++|+||+|+|++. +.+++.+.. .
T Consensus 13 mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~--~~~v~~~l~--------~ 80 (276)
T 2i76_A 13 LTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRY--IKTVANHLN--------L 80 (276)
T ss_dssp HHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTT--HHHHHTTTC--------C
T ss_pred HHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHH--HHHHHHHhc--------c
Confidence 799999999988 999 599999999988864 466 66788888889999999999654 788876532 2
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhh-ccceEEEecCCHHHHHHHHHHHHhcC
Q 022170 79 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE-AGTLTFMVGGSEDAYQAAKPLFLSMG 157 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~-~g~l~~~~gg~~~~~~~~~~ll~~~~ 157 (301)
++++||++|+..|.+. +... .. ...+...|+.+++.... ...+.++++++++.++.++++++.+|
T Consensus 81 ~~~ivi~~s~~~~~~~------l~~~----~~----~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lG 146 (276)
T 2i76_A 81 GDAVLVHCSGFLSSEI------FKKS----GR----ASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEIS 146 (276)
T ss_dssp SSCCEEECCSSSCGGG------GCSS----SE----EEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCcHHH------HHHh----hc----cccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHHHHhC
Confidence 4578999997766532 1110 00 02233445666554443 34556788888888999999999999
Q ss_pred CCeEeeCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHh
Q 022170 158 KNTIYCGGAGN---GAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS--TLTKILN 209 (301)
Q Consensus 158 ~~~~~~g~~g~---a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~--~~~~~~~ 209 (301)
.+++++++.+. ....+++.|++. ..+.|+..++++.|++.+ .+.+++.
T Consensus 147 ~~~~~v~~~~~~~~~~~~~l~~n~~~----~~~~~a~~~~~~~Gl~~~~a~~~~l~~ 199 (276)
T 2i76_A 147 GKYFVIPSEKKKAYHLAAVIASNFPV----ALAYLSKRIYTLLGLDEPELLIHTLMK 199 (276)
T ss_dssp SCEEECCGGGHHHHHHHHHHHHTTHH----HHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCEEEECHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 98999986543 244577777655 456788899999999987 4444444
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.5e-14 Score=130.24 Aligned_cols=176 Identities=13% Similarity=0.168 Sum_probs=118.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC-----------CCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-----------VPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~g-----------~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||.+||.+|+++||+|++||+++++++...+ .| ...++++ +.+++||+||+|||++.
T Consensus 48 MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~aDlVIeaVpe~~ 126 (463)
T 1zcj_A 48 MGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTVDLVVEAVFEDM 126 (463)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTCSEEEECCCSCH
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCCCEEEEcCCCCH
Confidence 8999999999999999999999988765432 11 1234566 56789999999999875
Q ss_pred cch-hhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEE
Q 022170 59 HQV-LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTF 137 (301)
Q Consensus 59 ~~~-~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~ 137 (301)
+ + ++++.+....+ .++++++. +|.++... ++++.+.. .....+.||+ .|+.. ..+..
T Consensus 127 ~-~k~~v~~~l~~~~-----~~~~ii~s-nTs~~~~~-~la~~~~~------~~~~ig~hf~-~P~~~-------~~lve 184 (463)
T 1zcj_A 127 N-LKKKVFAELSALC-----KPGAFLCT-NTSALNVD-DIASSTDR------PQLVIGTHFF-SPAHV-------MRLLE 184 (463)
T ss_dssp H-HHHHHHHHHHHHS-----CTTCEEEE-CCSSSCHH-HHHTTSSC------GGGEEEEEEC-SSTTT-------CCEEE
T ss_pred H-HHHHHHHHHHhhC-----CCCeEEEe-CCCCcCHH-HHHHHhcC------CcceEEeecC-CCccc-------ceeEE
Confidence 4 3 34444333232 34566665 55555544 55554331 1111125565 44432 23344
Q ss_pred Eec---CCHHHHHHHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022170 138 MVG---GSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 209 (301)
Q Consensus 138 ~~g---g~~~~~~~~~~ll~~~~~~~~~~g~-~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~ 209 (301)
++. +++++++.+.++++.+++.++++++ .|. ++|+++.. .++|++.++++ |++++++.+++.
T Consensus 185 vv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~gf-----i~Nrll~~----~~~ea~~l~~~-G~~~~~id~~~~ 250 (463)
T 1zcj_A 185 VIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGF-----VGNRMLAP----YYNQGFFLLEE-GSKPEDVDGVLE 250 (463)
T ss_dssp EEECSSCCHHHHHHHHHHHHHTTCEEEEBCCSTTT-----THHHHHHH----HHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHhCCEEEEECCCccH-----HHHHHHHH----HHHHHHHHHHc-CCCHHHHHHHHH
Confidence 443 4889999999999999999999986 343 44444443 45999999988 899999999886
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=120.36 Aligned_cols=149 Identities=16% Similarity=0.213 Sum_probs=110.5
Q ss_pred CcHHHHHHHHhC--CCeEEEEcCChhhHHHHHhCCCC--CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcc-ccCC
Q 022170 1 MGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGL-LQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~--G~~V~~~dr~~~~~~~l~~~g~~--~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~-l~~~ 75 (301)
||.++|..|.++ |++|++|||++++.+.+.+.|.. .+.++.++++++|+||+|+|.+. +++++...... +
T Consensus 17 mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~--~~~v~~~l~~~~l--- 91 (290)
T 3b1f_A 17 IGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK--TIDFIKILADLDL--- 91 (290)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH--HHHHHHHHHTSCC---
T ss_pred HHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH--HHHHHHHHHhcCC---
Confidence 799999999988 68999999999999988887763 45678888899999999999544 67777653322 2
Q ss_pred CCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCC----CHHHhh----ccceEEEe---cCCH
Q 022170 76 NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSG----GVLAAE----AGTLTFMV---GGSE 143 (301)
Q Consensus 76 ~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g----~~~~a~----~g~l~~~~---gg~~ 143 (301)
.++++++|++++.+...+.+.+.+.+ . +++|+. .|++| ++..+. .+..++++ ++++
T Consensus 92 --~~~~ivi~~~~~~~~~~~~l~~~l~~------~----~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~ 159 (290)
T 3b1f_A 92 --KEDVIITDAGSTKYEIVRAAEYYLKD------K----PVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKP 159 (290)
T ss_dssp --CTTCEEECCCSCHHHHHHHHHHHHTT------S----SCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCT
T ss_pred --CCCCEEEECCCCchHHHHHHHHhccc------c----CCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCH
Confidence 24679999999988777777766542 1 256776 68776 343332 45544444 4688
Q ss_pred HHHHHHHHHHHhcCCCeEeeCCc
Q 022170 144 DAYQAAKPLFLSMGKNTIYCGGA 166 (301)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~~~g~~ 166 (301)
+.++.++++|+.+|.+++++++.
T Consensus 160 ~~~~~v~~l~~~~G~~~~~~~~~ 182 (290)
T 3b1f_A 160 NTIPALQDLLSGLHARYVEIDAA 182 (290)
T ss_dssp THHHHHHHHTGGGCCEEEECCHH
T ss_pred HHHHHHHHHHHHcCCEEEEcCHH
Confidence 89999999999999988888753
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.6e-13 Score=119.60 Aligned_cols=247 Identities=15% Similarity=0.134 Sum_probs=148.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------------CCCCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------------TKETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-------------~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
||+.+|..|+++||+|++|+|+ +..+.+.+.|.. .++++++ +..+|+||+|||. .+ +++++..
T Consensus 14 ~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~-~~-~~~~~~~ 89 (335)
T 3ghy_A 14 VGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA-PA-LESVAAG 89 (335)
T ss_dssp HHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH-HH-HHHHHGG
T ss_pred HHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc-hh-HHHHHHH
Confidence 7999999999999999999996 677888877643 2356666 5889999999996 45 8888876
Q ss_pred CCccccCCCCCCCeEEEEeCCC-C--------H---------HHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHH
Q 022170 68 PNGLLQGGNSVRPQLLIDSSTI-D--------P---------QTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLA 129 (301)
Q Consensus 68 ~~~~l~~~~~~~~~ivid~st~-~--------p---------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~ 129 (301)
..+.+ .++++||.+.+. . + ...+.+.+.+....+ ..+ +.+..+-. .+|..
T Consensus 90 l~~~l-----~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v--~~g----v~~~~a~~-~~pg~ 157 (335)
T 3ghy_A 90 IAPLI-----GPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHV--LGC----VVHLTCAT-VSPGH 157 (335)
T ss_dssp GSSSC-----CTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGE--EEE----EECCCEEE-SSTTE
T ss_pred HHhhC-----CCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccE--EEE----EEEEEEEE-cCCcE
Confidence 55544 245677766544 2 1 112244444432100 000 10101111 11211
Q ss_pred hhc-cceEEEec----CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHH---------------------HHHHHHHH
Q 022170 130 AEA-GTLTFMVG----GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC---------------------NNLTMAVS 183 (301)
Q Consensus 130 a~~-g~l~~~~g----g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~---------------------~N~~~~~~ 183 (301)
... +.-.+.+| .+.+..+.+..+|+.-+.++....++-...-.|++ +|.....+
T Consensus 158 v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~~~~~~~l~ 237 (335)
T 3ghy_A 158 IRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDDPLVSAFC 237 (335)
T ss_dssp EEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHHSHHHHHHH
T ss_pred EEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHHhcChHHHHHH
Confidence 111 11124444 24567788999999888777666565554444533 33456678
Q ss_pred HHHHHHHHHHHHHcCCCH----HHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 022170 184 MLGVSEALTLGQSLGISA----STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE 259 (301)
Q Consensus 184 ~~~~~E~~~l~~~~G~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~ 259 (301)
..++.|+.+++++.|+++ +..++....... ++ +.+ -.|+..+-.-.+...=...+++++++
T Consensus 238 ~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~------~~---sSM------~qD~~~gr~~tEid~i~G~vv~~a~~ 302 (335)
T 3ghy_A 238 LAVMAEAKAIGARIGCPIEQSGEARSAVTRQLGA------FK---TSM------LQDAEAGRGPLEIDALVASVREIGLH 302 (335)
T ss_dssp HHHHHHHHHHHHTTTCCCCSCHHHHHHHHHTTCS------CC---CTT------TC-----CCCCCHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCccHHHHHHHHhccCC------CC---cHH------HHHHHcCCCCchHHHHhhHHHHHHHH
Confidence 899999999999999764 334443332211 11 111 12333322012333446789999999
Q ss_pred cCCCchHHHHHHHHHHHHH
Q 022170 260 VGVDCPLTSQAQDIYAKLC 278 (301)
Q Consensus 260 ~g~~~p~~~~~~~~~~~a~ 278 (301)
+|+++|..+.++++++...
T Consensus 303 ~gv~~P~~~~l~~li~~~e 321 (335)
T 3ghy_A 303 VGVPTPQIDTLLGLVRLHA 321 (335)
T ss_dssp HTCCCHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887653
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-14 Score=119.42 Aligned_cols=142 Identities=13% Similarity=0.144 Sum_probs=101.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||+++|..|.++||+|++|||+++ +++++|+||+|+| +.. +++++......+ . +
T Consensus 30 mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~-~~~-~~~v~~~l~~~~-----~-~ 83 (209)
T 2raf_A 30 MGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVP-YPA-LAALAKQYATQL-----K-G 83 (209)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSC-HHH-HHHHHHHTHHHH-----T-T
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCC-cHH-HHHHHHHHHHhc-----C-C
Confidence 799999999999999999999876 3468999999999 555 788886543322 2 6
Q ss_pred eEEEEeCCCCH--H-------H----HHHHHHHHhhchhhhccCCCCCceEEe------cccCCCHHHhhccceEEEecC
Q 022170 81 QLLIDSSTIDP--Q-------T----SRNISAAVSNCILKEKKDSWENPVMLD------APVSGGVLAAEAGTLTFMVGG 141 (301)
Q Consensus 81 ~ivid~st~~p--~-------~----~~~~~~~~~~~~~~~~~g~~~~~~~~~------~pv~g~~~~a~~g~l~~~~gg 141 (301)
++++++++..+ . + .+.+.+.++ +..++. +|.++.+.....+...++++|
T Consensus 84 ~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~------------~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g 151 (209)
T 2raf_A 84 KIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP------------DSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAG 151 (209)
T ss_dssp SEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT------------TSEEEECSTTSCHHHHHHSEETTTEECEEEEEE
T ss_pred CEEEEECCCCCccccccccCCCCCcHHHHHHHHCC------------CCcEEEeeecccHhhccccccCCCCCceeEEcC
Confidence 79999887322 1 2 344444432 135555 343332221111234556666
Q ss_pred -CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHH
Q 022170 142 -SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 180 (301)
Q Consensus 142 -~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~ 180 (301)
+++..+.++++|+.++.+++++++++.+..+|.+.|++.
T Consensus 152 ~~~~~~~~v~~ll~~~G~~~~~~~~i~~a~~~K~i~~l~~ 191 (209)
T 2raf_A 152 NDDSAKQRFTRALADSPLEVKDAGKLKRARELEAMGFMQM 191 (209)
T ss_dssp SCHHHHHHHHHHTTTSSCEEEEEESGGGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCceEeCCCHhHHHHhcchHHHHH
Confidence 568899999999999999999999999999999988775
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.5e-13 Score=111.59 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=111.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..++..|.+.||+|++|||++++.+.+.+.|+... ++.++++++|+||+|+|. .. +++++. .... . ++
T Consensus 39 ~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~-~~-~~~v~~-l~~~-----~-~~ 108 (215)
T 2vns_A 39 FARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFR-EH-YSSLCS-LSDQ-----L-AG 108 (215)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCG-GG-SGGGGG-GHHH-----H-TT
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCCh-HH-HHHHHH-HHHh-----c-CC
Confidence 6899999999999999999999999988877777655 788889999999999995 44 667663 2211 1 46
Q ss_pred eEEEEeCCCCHHHHHH----HHHHHhhchhhhccCCCCCceEEe--cccCCCHHH--hhcc-ceEEEecCCHHHHHHHHH
Q 022170 81 QLLIDSSTIDPQTSRN----ISAAVSNCILKEKKDSWENPVMLD--APVSGGVLA--AEAG-TLTFMVGGSEDAYQAAKP 151 (301)
Q Consensus 81 ~ivid~st~~p~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~--~pv~g~~~~--a~~g-~l~~~~gg~~~~~~~~~~ 151 (301)
+++|++++..+....+ ..+.+.+. .. +..++. .++.+.+.. ...+ +.++++|++++.++.+++
T Consensus 109 ~~vv~~s~g~~~~~l~~~~~~~~~l~~~----l~----~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~~ 180 (215)
T 2vns_A 109 KILVDVSNPTEQEHLQHRESNAEYLASL----FP----TCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSE 180 (215)
T ss_dssp CEEEECCCCCHHHHHHCSSCHHHHHHHH----CT----TSEEEEECTTBCHHHHHTCSCSSCCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcccccccccccHHHHHHHH----CC----CCeEEeccccccHhHhcccccCCceeEEEecCCHHHHHHHHH
Confidence 7999999887754321 11222210 01 112222 122211100 1122 236777889999999999
Q ss_pred HHHhcCCCeEeeCCcchHHHHHHHHHH
Q 022170 152 LFLSMGKNTIYCGGAGNGAAAKICNNL 178 (301)
Q Consensus 152 ll~~~~~~~~~~g~~g~a~~~k~~~N~ 178 (301)
+|+.+|.+++++|++|+|+.++...++
T Consensus 181 ll~~~G~~~~~~g~~~~~~~~e~~~~~ 207 (215)
T 2vns_A 181 MALAMGFMPVDMGSLASAWEVEAMPLR 207 (215)
T ss_dssp HHHHTTCEEEECCSGGGHHHHHHSCCB
T ss_pred HHHHcCCceEeecchhhhhHhhhhhhh
Confidence 999999999999999999998854333
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-12 Score=114.34 Aligned_cols=243 Identities=12% Similarity=0.157 Sum_probs=149.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------------CCCCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------------TKETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-------------~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
||+++|..|+++||+|++| ++++.++.+.+.|.. .++++++ +..+|+||+|||.. + +++++..
T Consensus 30 ~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilavk~~-~-~~~~l~~ 105 (318)
T 3hwr_A 30 VGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCVKST-D-TQSAALA 105 (318)
T ss_dssp HHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECCCGG-G-HHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEcccc-c-HHHHHHH
Confidence 7999999999999999999 999999988876532 2345544 57899999999965 5 8888876
Q ss_pred CCccccCCCCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHH
Q 022170 68 PNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAY 146 (301)
Q Consensus 68 ~~~~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~ 146 (301)
..+.+. ++++||.+ +++.+.. .+.+.+.+. + ..+......++..|-+.. ....|. +.+|. .+..
T Consensus 106 l~~~l~-----~~~~iv~~~nGi~~~~--~l~~~~~~~-v--l~g~~~~~a~~~gP~~~~--~~~~g~--~~ig~-~~~~ 170 (318)
T 3hwr_A 106 MKPALA-----KSALVLSLQNGVENAD--TLRSLLEQE-V--AAAVVYVATEMAGPGHVR--HHGRGE--LVIEP-TSHG 170 (318)
T ss_dssp HTTTSC-----TTCEEEEECSSSSHHH--HHHHHCCSE-E--EEEEEEEEEEEEETTEEE--EEEEEE--EEECC-CTTT
T ss_pred HHHhcC-----CCCEEEEeCCCCCcHH--HHHHHcCCc-E--EEEEEEEeEEEcCCeEEE--EcCCce--EEEcC-CHHH
Confidence 555442 34556554 5666652 555554210 0 000000001122232111 111232 33555 3455
Q ss_pred HHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCCCH----
Q 022170 147 QAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM---------------------AVSMLGVSEALTLGQSLGISA---- 201 (301)
Q Consensus 147 ~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~---------------------~~~~~~~~E~~~l~~~~G~~~---- 201 (301)
+.++++|+..+.++....++-...-.|++.|... ..+..++.|+..++++.|++.
T Consensus 171 ~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~ 250 (318)
T 3hwr_A 171 ANLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEGVKLPDDV 250 (318)
T ss_dssp HHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTTCCCCTTH
T ss_pred HHHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcCCCCChHH
Confidence 7899999998888777767777777787766532 335678899999999999862
Q ss_pred -HHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 022170 202 -STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 278 (301)
Q Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 278 (301)
+.++++........+++ ..++..++..+ ++.. ...++++++++|+++|..+.++++++...
T Consensus 251 ~~~~~~~~~~~~~~~sSM-----~qD~~~gr~tE--------id~i---~G~vv~~a~~~gv~tP~~~~l~~ll~~~e 312 (318)
T 3hwr_A 251 ALAIRRIAETMPRQSSST-----AQDLARGKRSE--------IDHL---NGLIVRRGDALGIPVPANRVLHALVRLIE 312 (318)
T ss_dssp HHHHHHHHHHSTTCCCHH-----HHHHHTTCCCS--------GGGT---HHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHH-----HHHHHcCChhH--------HHHH---HHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 23334333221111100 11122222221 1222 46899999999999999999998876543
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-12 Score=112.24 Aligned_cols=237 Identities=13% Similarity=0.085 Sum_probs=147.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC---------------CCCCCHHHHHhcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV---------------PTKETPFEVAEASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~---------------~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~ 65 (301)
||+.+|..|.++||+|++|+|++ .+.+.+.|+ ..+.+++++.+.+|+||+|||... +++++
T Consensus 13 iG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~~~--~~~~l 88 (320)
T 3i83_A 13 IGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKVVE--GADRV 88 (320)
T ss_dssp HHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCCCT--TCCHH
T ss_pred HHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCCCC--hHHHH
Confidence 79999999999999999999987 366665442 234566676668999999999654 77877
Q ss_pred cCCCccccCCCCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCC-------CHHHhhccceEE
Q 022170 66 NGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG-------GVLAAEAGTLTF 137 (301)
Q Consensus 66 ~~~~~~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g-------~~~~a~~g~l~~ 137 (301)
....+.+. ++++||.+ .++.+. +.+.+.+.. -.++.+|++. +... ..+.-.+
T Consensus 89 ~~l~~~l~-----~~t~Iv~~~nGi~~~--~~l~~~~~~------------~~vl~g~~~~~a~~~~pg~v~-~~~~~~~ 148 (320)
T 3i83_A 89 GLLRDAVA-----PDTGIVLISNGIDIE--PEVAAAFPD------------NEVISGLAFIGVTRTAPGEIW-HQAYGRL 148 (320)
T ss_dssp HHHTTSCC-----TTCEEEEECSSSSCS--HHHHHHSTT------------SCEEEEEEEEEEEEEETTEEE-EEEEEEE
T ss_pred HHHHhhcC-----CCCEEEEeCCCCChH--HHHHHHCCC------------CcEEEEEEEeceEEcCCCEEE-ECCCCEE
Confidence 66544442 33455544 555543 234444432 2345555443 1111 1111134
Q ss_pred Eec----CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHH--------------------HHHHHHHHHHHHHH
Q 022170 138 MVG----GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT--------------------MAVSMLGVSEALTL 193 (301)
Q Consensus 138 ~~g----g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~--------------------~~~~~~~~~E~~~l 193 (301)
.+| .+.+..+.+..+|+.-+.++....++-...--|++-|.. ...+..++.|+.++
T Consensus 149 ~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~~~v 228 (320)
T 3i83_A 149 MLGNYPGGVSERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEIRAV 228 (320)
T ss_dssp EEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHHHHH
T ss_pred EEecCCCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHHHHH
Confidence 443 345677889999999888887777776666667665542 33467899999999
Q ss_pred HHHcCCCH-----HHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHH
Q 022170 194 GQSLGISA-----STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 268 (301)
Q Consensus 194 ~~~~G~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~ 268 (301)
+++.|++. +.+++.....+.+ + +.+. .|+..+- -.+...=...++++++++|+++|..+
T Consensus 229 a~a~G~~l~~~~~~~~~~~~~~~~~~------~---sSM~------qD~~~gr-~tEid~i~G~vv~~a~~~gv~~P~~~ 292 (320)
T 3i83_A 229 AAANGHPLPEDIVEKNVASTYKMPPY------K---TSML------VDFEAGQ-PMETEVILGNAVRAGRRTRVAIPHLE 292 (320)
T ss_dssp HHHTTCCCCTTHHHHHHHHHHHSCCC------C---CHHH------HHHHHTC-CCCHHHHTHHHHHHHHHTTCCCHHHH
T ss_pred HHHcCCCCChHHHHHHHHHHhcCCCC------C---CcHH------HHHHhCC-CchHHHHccHHHHHHHHhCCCCCHHH
Confidence 99999863 2333333222111 0 0011 1111110 11222234689999999999999999
Q ss_pred HHHHHHHHH
Q 022170 269 QAQDIYAKL 277 (301)
Q Consensus 269 ~~~~~~~~a 277 (301)
.++++++..
T Consensus 293 ~l~~~l~~~ 301 (320)
T 3i83_A 293 SVYALMKLL 301 (320)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999877654
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-11 Score=109.45 Aligned_cols=247 Identities=11% Similarity=0.100 Sum_probs=146.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC--------------CCCCHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--------------TKETPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~--------------~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
||+.+|..|+++||+|++|+|++ .+.+.+.|.. +++++++ +..+|+||+|||. .+ +++++.
T Consensus 13 iG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~-~~-~~~~l~ 87 (312)
T 3hn2_A 13 LGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKT-FA-NSRYEE 87 (312)
T ss_dssp THHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCG-GG-GGGHHH
T ss_pred HHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCC-CC-cHHHHH
Confidence 89999999999999999999986 4777766532 2345544 6789999999995 44 788887
Q ss_pred CCCccccCCCCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhh-ccceEEEec----
Q 022170 67 GPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE-AGTLTFMVG---- 140 (301)
Q Consensus 67 ~~~~~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~-~g~l~~~~g---- 140 (301)
...+.+. ++++||.+ .++.+.. .+.+.+....+ .. ++.+..+-.. +|.... .+.-.+.+|
T Consensus 88 ~l~~~l~-----~~~~iv~l~nGi~~~~--~l~~~~~~~~v--~~----~~~~~~a~~~-~p~~v~~~~~g~~~ig~~~~ 153 (312)
T 3hn2_A 88 LIRPLVE-----EGTQILTLQNGLGNEE--ALATLFGAERI--IG----GVAFLCSNRG-EPGEVHHLGAGRIILGEFLP 153 (312)
T ss_dssp HHGGGCC-----TTCEEEECCSSSSHHH--HHHHHTCGGGE--EE----EEEEEECCBC-SSSEEEECEEEEEEEEESSC
T ss_pred HHHhhcC-----CCCEEEEecCCCCcHH--HHHHHCCCCcE--EE----EEEEeeeEEc-CCcEEEECCCCeEEEecCCC
Confidence 6555442 34455554 5565542 44555442100 00 0112222111 221111 111133443
Q ss_pred CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHcC-
Q 022170 141 GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL---------------------TMAVSMLGVSEALTLGQSLG- 198 (301)
Q Consensus 141 g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~---------------------~~~~~~~~~~E~~~l~~~~G- 198 (301)
.+.+..+.+..+|+.-+.++....++-...--|++-|. ....+..++.|+.+++++.|
T Consensus 154 ~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~va~a~G~ 233 (312)
T 3hn2_A 154 RDTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAGANAQGL 233 (312)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHHHHHcCC
Confidence 24567788999999988877666666555555554443 34457788999999999999
Q ss_pred -CCH-----HHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 022170 199 -ISA-----STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 272 (301)
Q Consensus 199 -~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~ 272 (301)
++. +.+++.....+. ++ +.+. .|+..+- -.+...=...++++++++|+++|+.+.+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~------~~---sSM~------qD~~~gr-~tEid~i~G~vv~~a~~~gv~~P~~~~l~~ 297 (312)
T 3hn2_A 234 ATFIADGYVDDMLEFTDAMGE------YK---PSME------IDREEGR-PLEIAAIFRTPLAYGAREGIAMPRVEMLAT 297 (312)
T ss_dssp SSCCCTTHHHHHHHHHTTSCS------CC---CHHH------HHHHTTC-CCCHHHHTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHhcCCC------CC---chHH------HHHHhCC-CccHHHHhhHHHHHHHHhCCCCCHHHHHHH
Confidence 642 223332221111 11 0111 1111111 112223356899999999999999999999
Q ss_pred HHHHHHHCCC
Q 022170 273 IYAKLCENGH 282 (301)
Q Consensus 273 ~~~~a~~~g~ 282 (301)
+++.....|+
T Consensus 298 ll~~~~~~~~ 307 (312)
T 3hn2_A 298 LLEQATGEGH 307 (312)
T ss_dssp HHHHHTTC--
T ss_pred HHHHHHhccc
Confidence 9987766665
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7.7e-12 Score=110.05 Aligned_cols=183 Identities=14% Similarity=0.141 Sum_probs=121.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH-----------hCC--------------CCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DMG--------------VPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~-----------~~g--------------~~~~~s~~e~~~~adiVi~~vp 55 (301)
||+++|..++.+||+|++||++++..+... +.| +..++++.+++++||+|+-|+|
T Consensus 17 MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~~~ad~ViEav~ 96 (319)
T 3ado_A 17 VGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAVEGVVHIQECVP 96 (319)
T ss_dssp HHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHTTTEEEEEECCC
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHhccCcEEeeccc
Confidence 899999999999999999999998754332 222 2345788899999999999999
Q ss_pred CCccchhh-hhcCCCccccCCCCCCCeE-EEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhcc
Q 022170 56 SSSHQVLD-VYNGPNGLLQGGNSVRPQL-LIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 133 (301)
Q Consensus 56 ~~~~~~~~-v~~~~~~~l~~~~~~~~~i-vid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g 133 (301)
.+.+ ++. ++.+++.+. +++.+ -.++|+.+++ ++++.+.+ +.+..+.||+.+|-.-.
T Consensus 97 E~l~-iK~~lf~~l~~~~-----~~~aIlaSNTSsl~is---~ia~~~~~------p~r~ig~HffNP~~~m~------- 154 (319)
T 3ado_A 97 ENLD-LKRKIFAQLDSIV-----DDRVVLSSSSSCLLPS---KLFTGLAH------VKQCIVAHPVNPPYYIP------- 154 (319)
T ss_dssp SCHH-HHHHHHHHHHTTC-----CSSSEEEECCSSCCHH---HHHTTCTT------GGGEEEEEECSSTTTCC-------
T ss_pred cHHH-HHHHHHHHHHHHh-----hhcceeehhhhhccch---hhhhhccC------CCcEEEecCCCCccccc-------
Confidence 9877 554 444444444 23333 3345555655 45544432 11112356665543221
Q ss_pred ceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 022170 134 TLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 210 (301)
Q Consensus 134 ~l~~~~gg---~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~ 210 (301)
++=++.| ++++++++..+++.+++.++.+-..-.|... |=+. ...++|++.+.+..+.+++++-.++..
T Consensus 155 -LVEiv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~----NRl~---~~~~~EA~~lv~eGvas~edID~~~~~ 226 (319)
T 3ado_A 155 -LVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVL----NRLQ---YAIISEAWRLVEEGIVSPSDLDLVMSD 226 (319)
T ss_dssp -EEEEEECTTCCHHHHHHHHHHHHHTTCEEEECSSCCTTTTH----HHHH---HHHHHHHHHHHHTTSSCHHHHHHHHHT
T ss_pred -hHHhcCCCCCcHHHHHHHHHHHHHhCCccCCcCCCCCCEeH----HHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 2222333 7889999999999999888755322233333 3332 366799999999999999999999887
Q ss_pred cCC
Q 022170 211 SSA 213 (301)
Q Consensus 211 ~~~ 213 (301)
+.+
T Consensus 227 g~g 229 (319)
T 3ado_A 227 GLG 229 (319)
T ss_dssp THH
T ss_pred CCC
Confidence 654
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-11 Score=102.19 Aligned_cols=144 Identities=11% Similarity=0.073 Sum_probs=99.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||++||.+|.++||+|++|++. ++ +.++| |+|+|++ + +.+++.+.... ..++
T Consensus 17 ~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~~-a-i~~vl~~l~~~-----l~~g 68 (232)
T 3dfu_A 17 STVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDAH-G-VEGYVEKLSAF-----ARRG 68 (232)
T ss_dssp CCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECSS-C-HHHHHHHHHTT-----CCTT
T ss_pred HHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcHH-H-HHHHHHHHHHh-----cCCC
Confidence 8999999999999999999982 22 56789 9999976 4 88888654332 2467
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCC
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN 159 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~ 159 (301)
++++|+|+..+....+ .+.. . +..|+. .|+++.+ .++.+++++.++.++++++.+|.+
T Consensus 69 ~ivvd~sgs~~~~vl~---~~~~------~----g~~fvg~HPm~g~~--------~~i~a~d~~a~~~l~~L~~~lG~~ 127 (232)
T 3dfu_A 69 QMFLHTSLTHGITVMD---PLET------S----GGIVMSAHPIGQDR--------WVASALDELGETIVGLLVGELGGS 127 (232)
T ss_dssp CEEEECCSSCCGGGGH---HHHH------T----TCEEEEEEEEETTE--------EEEEESSHHHHHHHHHHHHHTTCE
T ss_pred CEEEEECCcCHHHHHH---HHHh------C----CCcEEEeeeCCCCc--------eeeeCCCHHHHHHHHHHHHHhCCE
Confidence 8999998765543222 2221 1 256774 7997643 566677888999999999999999
Q ss_pred eEeeCCcchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022170 160 TIYCGGAGNGAA--AKICNNLTMAVSMLGVSEALTLGQSL 197 (301)
Q Consensus 160 ~~~~g~~g~a~~--~k~~~N~~~~~~~~~~~E~~~l~~~~ 197 (301)
++++++...... .-...|.+. ..+.++..+.++.
T Consensus 128 vv~~~~~~hd~~~AAvsh~nhLv----~L~~~A~~ll~~~ 163 (232)
T 3dfu_A 128 IVEIADDKRAQLAAALTYAGFLS----TLQRDASYFLDEF 163 (232)
T ss_dssp ECCCCGGGHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred EEEeCHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 999987433322 111245554 5556666666443
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.20 E-value=8.4e-11 Score=104.97 Aligned_cols=181 Identities=14% Similarity=0.082 Sum_probs=113.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhc-CCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN-GPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~-~~~~~l~~~~~~ 78 (301)
||+++|.+|.+.|++|++|+|++++ .+.+.+.|+..+ ++.++++++|+||+|+|+.. ..+++. +....+ .
T Consensus 27 mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~--~~~v~~~~i~~~l-----~ 98 (338)
T 1np3_A 27 QGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEF--QGRLYKEEIEPNL-----K 98 (338)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHH--HHHHHHHHTGGGC-----C
T ss_pred HHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHH--HHHHHHHHHHhhC-----C
Confidence 7999999999999999999999876 566666787665 88899999999999999544 677776 443333 3
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHH------hhccceEEEe---cCCHHHHHH
Q 022170 79 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLA------AEAGTLTFMV---GGSEDAYQA 148 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~------a~~g~l~~~~---gg~~~~~~~ 148 (301)
+++++++++++.. .+ +.+.. ..++.++ ..| .+.... ...|...+++ +.+++..+.
T Consensus 99 ~~~ivi~~~gv~~----~~-~~~~~---------~~~~~vv~~~P-~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~ 163 (338)
T 1np3_A 99 KGATLAFAHGFSI----HY-NQVVP---------RADLDVIMIAP-KAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNV 163 (338)
T ss_dssp TTCEEEESCCHHH----HT-TSSCC---------CTTCEEEEEEE-SSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHH
T ss_pred CCCEEEEcCCchh----HH-HhhcC---------CCCcEEEeccC-CCCchhHHHHHhccCCCeEEEEecCCCCHHHHHH
Confidence 5679998865322 11 11110 0123444 346 322211 1124434433 336778899
Q ss_pred HHHHHHhcCC-C--eEeeCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 022170 149 AKPLFLSMGK-N--TIYCGGAGNGAAAKICNN-LTMAVSMLGVSEALTLGQSLGISASTL 204 (301)
Q Consensus 149 ~~~ll~~~~~-~--~~~~g~~g~a~~~k~~~N-~~~~~~~~~~~E~~~l~~~~G~~~~~~ 204 (301)
+..+++.+|. + ++.+..........++.+ .+.......++.++....+.|++++..
T Consensus 164 ~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a 223 (338)
T 1np3_A 164 ALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMA 223 (338)
T ss_dssp HHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999998 4 666653333444445544 222333344444455556789988754
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.3e-11 Score=103.77 Aligned_cols=242 Identities=12% Similarity=0.107 Sum_probs=140.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC---CCCCHHHHH-hcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP---TKETPFEVA-EASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~---~~~s~~e~~-~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||+.+|..|.++|++|++|+|+++.++.....|.. ...++.+.+ ..+|+||+|||. .+ +++++....+.+.
T Consensus 13 ~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~-~~-~~~~l~~l~~~l~--- 87 (294)
T 3g17_A 13 VGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKT-HQ-LDAVIPHLTYLAH--- 87 (294)
T ss_dssp HHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCG-GG-HHHHGGGHHHHEE---
T ss_pred HHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCc-cC-HHHHHHHHHHhhC---
Confidence 79999999999999999999998765433333421 122444544 789999999995 45 8888876554442
Q ss_pred CCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHh
Q 022170 77 SVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLS 155 (301)
Q Consensus 77 ~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~ 155 (301)
++++||.+ .++...+. +....+ .. ++.+..+-.. +|.....+...+.+ ++.+..+.+..+|+.
T Consensus 88 --~~~~iv~~~nGi~~~~~------~~~~~v--~~----g~~~~~a~~~-~pg~v~~~~~~~~~-~~~~~~~~l~~~l~~ 151 (294)
T 3g17_A 88 --EDTLIILAQNGYGQLEH------IPFKNV--CQ----AVVYISGQKK-GDVVTHFRDYQLRI-QDNALTRQFRDLVQD 151 (294)
T ss_dssp --EEEEEEECCSSCCCGGG------CCCSCE--EE----CEEEEEEEEE-TTEEEEEEEEEEEE-ECSHHHHHHHHHTTT
T ss_pred --CCCEEEEeccCcccHhh------CCCCcE--EE----EEEEEEEEEc-CCCEEEECCCEEec-CccHHHHHHHHHHHh
Confidence 23455544 45555432 221000 00 1222211111 11111111112222 455667788888888
Q ss_pred cCCCeEeeCCcchHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHhh---
Q 022170 156 MGKNTIYCGGAGNGAAAKICNNL--------------------TMAVSMLGVSEALTLGQSLGIS--ASTLTKILNS--- 210 (301)
Q Consensus 156 ~~~~~~~~g~~g~a~~~k~~~N~--------------------~~~~~~~~~~E~~~l~~~~G~~--~~~~~~~~~~--- 210 (301)
-+.++....++-...--|++-|. ....+..++.|+.+++++.|++ .+.+.+.+..
T Consensus 152 ~~~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~~~ 231 (294)
T 3g17_A 152 SQIDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQTVDTIMTIYQG 231 (294)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred CCCceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Confidence 77777766676666666666665 2334668899999999999975 4334333332
Q ss_pred cCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 022170 211 SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 278 (301)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 278 (301)
.+.....| . ..++..++..+ ++.. ...++++++++|+++|..+.++++++...
T Consensus 232 ~~~~~~sS-M---~qD~~~gr~tE--------id~i---~G~vv~~a~~~gv~~P~~~~l~~ll~~~e 284 (294)
T 3g17_A 232 YPDEMGTS-M---YYDIVHQQPLE--------VEAI---QGFIYRRAREHNLDTPYLDTIYSFLRAYQ 284 (294)
T ss_dssp SCTTCCCH-H---HHHHHTTCCCS--------GGGT---HHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCc-H---HHHHHcCCCcc--------HHHh---hhHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 11110000 0 01111122111 1111 46899999999999999999999887654
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-12 Score=115.40 Aligned_cols=134 Identities=15% Similarity=0.186 Sum_probs=94.4
Q ss_pred CcHHHHHHHHhC-CC-eEEEEcCChhhHHHHHhC-C--CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKA-GY-KMAVHDVNCNVMKMFSDM-G--VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~-G~-~V~~~dr~~~~~~~l~~~-g--~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||.+++.+|.+. |+ +|.+|||++++.+.+.+. + +..+++++++++++|+|++|+|. ...++.. ..+
T Consensus 146 ~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~----~~~v~~~--~~l--- 216 (312)
T 2i99_A 146 QAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA----TEPILFG--EWV--- 216 (312)
T ss_dssp HHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC----SSCCBCG--GGS---
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC----CCcccCH--HHc---
Confidence 688999999876 76 899999999999988765 5 66778999999999999999994 3344432 122
Q ss_pred CCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe----cccCCCHH----HhhccceEEEecCCHHHHH
Q 022170 76 NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD----APVSGGVL----AAEAGTLTFMVGGSEDAYQ 147 (301)
Q Consensus 76 ~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~pv~g~~~----~a~~g~l~~~~gg~~~~~~ 147 (301)
.++++|+++++..|.. +++.+.+.+ .+ ..|+| +|+..|.. .+..+++..+++|+.+.++
T Consensus 217 --~~g~~vi~~g~~~p~~-~el~~~~~~------~g----~~~vD~~~~a~~~~G~~~~~~~~~~g~L~~~v~G~~~~~~ 283 (312)
T 2i99_A 217 --KPGAHINAVGASRPDW-RELDDELMK------EA----VLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPAHC 283 (312)
T ss_dssp --CTTCEEEECCCCSTTC-CSBCHHHHH------HS----EEEESCHHHHHHHCHHHHTTTCCCCEEHHHHHHTSSCCCT
T ss_pred --CCCcEEEeCCCCCCCc-eeccHHHHh------cC----EEEECCHHHHHhhcCCcccChhhccccHHHHhCCCCCCCC
Confidence 3578999999999864 566655543 12 68999 66633332 2344677888899765444
Q ss_pred HHHHHHHhc
Q 022170 148 AAKPLFLSM 156 (301)
Q Consensus 148 ~~~~ll~~~ 156 (301)
...++|+.+
T Consensus 284 ~~~~vf~~~ 292 (312)
T 2i99_A 284 EKTTVFKSL 292 (312)
T ss_dssp TSCEEEECC
T ss_pred CCcEEEECC
Confidence 333333333
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-08 Score=92.00 Aligned_cols=79 Identities=11% Similarity=0.086 Sum_probs=59.5
Q ss_pred CcHHHHHHHHh-CCCeEEEEc---CChhhHHHH-HhCC---------C---------C-CCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMK-AGYKMAVHD---VNCNVMKMF-SDMG---------V---------P-TKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~-~G~~V~~~d---r~~~~~~~l-~~~g---------~---------~-~~~s~~e~~~~adiVi~~vp~ 56 (301)
||+++|..|++ +||+|++|+ |++++++.+ .+.| . . .++++++++..+|+||+|||+
T Consensus 13 ~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~Vilav~~ 92 (404)
T 3c7a_A 13 GAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISGADVVILTVPA 92 (404)
T ss_dssp HHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTTCSEEEECSCG
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCCCCEEEEeCch
Confidence 79999999988 599999999 888888874 3332 1 1 456788889999999999996
Q ss_pred CccchhhhhcCCCccccCCCCCCCeEEEEe
Q 022170 57 SSHQVLDVYNGPNGLLQGGNSVRPQLLIDS 86 (301)
Q Consensus 57 ~~~~~~~v~~~~~~~l~~~~~~~~~ivid~ 86 (301)
.. .++++....+.+ .++++|+..
T Consensus 93 ~~--~~~v~~~l~~~l-----~~~~ivv~~ 115 (404)
T 3c7a_A 93 FA--HEGYFQAMAPYV-----QDSALIVGL 115 (404)
T ss_dssp GG--HHHHHHHHTTTC-----CTTCEEEET
T ss_pred HH--HHHHHHHHHhhC-----CCCcEEEEc
Confidence 54 788886654444 245677764
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.8e-09 Score=93.84 Aligned_cols=233 Identities=11% Similarity=0.019 Sum_probs=128.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCC----------HHHHHhcCCEEEEecCCCccchhhhhcCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKET----------PFEVAEASDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s----------~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
||+.+|..|. +|++|++|+|++++.+.+.+.|.....+ ..+....+|+||+||+. .+ +++++.....
T Consensus 13 ~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~-~~-~~~~l~~l~~ 89 (307)
T 3ego_A 13 VGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQ-HQ-LQSVFSSLER 89 (307)
T ss_dssp HHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCG-GG-HHHHHHHTTS
T ss_pred HHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCH-HH-HHHHHHHhhc
Confidence 7999999999 9999999999999888888777543211 02345689999999994 44 8888865443
Q ss_pred cccCCCCCCCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccC-----CCHH---HhhccceEEEecC
Q 022170 71 LLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS-----GGVL---AAEAGTLTFMVGG 141 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~-----g~~~---~a~~g~l~~~~gg 141 (301)
+ .+++ ||-+ .++... +.+.+.+.. -.++.+-+. .+|. ....|. +.+|.
T Consensus 90 ~------~~~~-ivs~~nGi~~~--e~l~~~~~~------------~~vl~g~~~~~a~~~~pg~v~~~~~g~--~~iG~ 146 (307)
T 3ego_A 90 I------GKTN-ILFLQNGMGHI--HDLKDWHVG------------HSIYVGIVEHGAVRKSDTAVDHTGLGA--IKWSA 146 (307)
T ss_dssp S------CCCE-EEECCSSSHHH--HHHHTCCCS------------CEEEEEEECCEEEECSSSEEEEEECCC--EEEEE
T ss_pred C------CCCe-EEEecCCccHH--HHHHHhCCC------------CcEEEEEEeeceEECCCCEEEEeeeee--EEEEe
Confidence 2 2344 4444 455433 223322221 112221110 0111 111233 33332
Q ss_pred ---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHc
Q 022170 142 ---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM---------------------AVSMLGVSEALTLGQSL 197 (301)
Q Consensus 142 ---~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~---------------------~~~~~~~~E~~~l~~~~ 197 (301)
+.+.++.+...|+.-+.++....++-...--|++.|... ......+.|+..++++.
T Consensus 147 ~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~va~~~ 226 (307)
T 3ego_A 147 FDDAEPDRLNILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRILKLE 226 (307)
T ss_dssp CTTCCGGGGTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCCcHHHHHHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHHHHhcc
Confidence 223333344444444445555556666667777766532 23456778888887654
Q ss_pred CCCHHHHHHHHh----hcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 022170 198 GISASTLTKILN----SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI 273 (301)
Q Consensus 198 G~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~ 273 (301)
+++.+++-+- ......+++ ..++..++.. -++. =...++++++++|+++|..+.++++
T Consensus 227 --~~~~~~~~~~~~~~~~~~~~sSM-----~qD~~~gr~t--------Eid~---i~G~vv~~a~~~gv~tP~~~~l~~l 288 (307)
T 3ego_A 227 --NEEKAWERVQAVCGQTKENRSSM-----LVDVIGGRQT--------EADA---IIGYLLKEASLQGLDAVHLEFLYGS 288 (307)
T ss_dssp --CHHHHHHHHHHHHHHTTTCCCHH-----HHHHHHTCCC--------SHHH---HHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred --ChHHHHHHHHHHHHhcCCCCchH-----HHHHHcCCcc--------cHHH---hhhHHHHHHHHcCCCCcHHHHHHHH
Confidence 3444433322 111110000 0111111111 0222 2468999999999999999999998
Q ss_pred HHHH
Q 022170 274 YAKL 277 (301)
Q Consensus 274 ~~~a 277 (301)
++..
T Consensus 289 i~~~ 292 (307)
T 3ego_A 289 IKAL 292 (307)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8754
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-10 Score=98.44 Aligned_cols=151 Identities=19% Similarity=0.087 Sum_probs=103.6
Q ss_pred CcHHHHHHHHhCCCeE-EEEcCChhhHHHHHhCCCCCCCCHHHHH-hcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V-~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||..++++|.+.|++| .+||+++ +.+. .++++++++ .++|+|++|+|++. ..+++.. .+ .
T Consensus 11 mG~~~~~~l~~~g~~lv~v~d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~~--~~~~~~~---~l-----~ 72 (236)
T 2dc1_A 11 IGKFLAEWLERNGFEIAAILDVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQA--VKDYAEK---IL-----K 72 (236)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHHH--HHHHHHH---HH-----H
T ss_pred HHHHHHHHHhcCCCEEEEEEecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHHH--HHHHHHH---HH-----H
Confidence 7899999999999997 6999985 3221 577899998 68999999999664 4444421 23 2
Q ss_pred CCeEEEEeCCCCHH---HHHHHHHHHhhchhhhccCCCCCce-EEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHH
Q 022170 79 RPQLLIDSSTIDPQ---TSRNISAAVSNCILKEKKDSWENPV-MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFL 154 (301)
Q Consensus 79 ~~~ivid~st~~p~---~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~ 154 (301)
.|+.+++.|+..+. ..+++.+...+. | .. ++++|++++......+.+ +++...+...++.++
T Consensus 73 ~G~~vv~~~~~~~~~~~~~~~l~~~a~~~------g----~~~~i~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~ 138 (236)
T 2dc1_A 73 AGIDLIVLSTGAFADRDFLSRVREVCRKT------G----RRVYIASGAIGGLDAIFSASE----LIEEIVLTTRKNWRQ 138 (236)
T ss_dssp TTCEEEESCGGGGGSHHHHHHHHHHHHHH------C----CCEEECCTTCSCHHHHHHTGG----GEEEEEEEEEEEGGG
T ss_pred CCCcEEEECcccCChHHHHHHHHHHHHhc------C----CeEEecCccccChHHHHHhhc----cccEEEEEEEcChHH
Confidence 46788888877643 226776665431 2 33 789999999887776664 444434444445556
Q ss_pred hcCCCeEeeCCcchH-HHHHHHHHHHHHHH
Q 022170 155 SMGKNTIYCGGAGNG-AAAKICNNLTMAVS 183 (301)
Q Consensus 155 ~~~~~~~~~g~~g~a-~~~k~~~N~~~~~~ 183 (301)
.++.++++.|+.+.+ ..+|...|.+....
T Consensus 139 ~~~~~~~~~G~~~~~~~~~~~~~n~~~~~~ 168 (236)
T 2dc1_A 139 FGRKGVIFEGSASEAAQKFPKNLNVAATLS 168 (236)
T ss_dssp TTSCEEEEEEEHHHHHHHSTTCCHHHHHHH
T ss_pred cCcceEEEeccHHHHHHHCCchHHHHHHHH
Confidence 677778888886544 46777777776433
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-08 Score=98.56 Aligned_cols=175 Identities=12% Similarity=0.162 Sum_probs=109.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----------------------CCCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----------------------GVPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----------------------g~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||..+|..++.+|++|+++|++++..+...+. .+..+++. +.+++||+||.+||.+.
T Consensus 327 MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aDlVIEAV~E~l 405 (742)
T 3zwc_A 327 MGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTVDLVVEAVFEDM 405 (742)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCG-GGGGSCSEEEECCCSCH
T ss_pred HHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcH-HHHhhCCEEEEeccccH
Confidence 89999999999999999999999876543221 12233444 44689999999999987
Q ss_pred cchhh-hhcCCCccccCCCCCCCeE-EEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceE
Q 022170 59 HQVLD-VYNGPNGLLQGGNSVRPQL-LIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT 136 (301)
Q Consensus 59 ~~~~~-v~~~~~~~l~~~~~~~~~i-vid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~ 136 (301)
+ ++. ++.+.+.++ +++.| -.++|++++. ++++.+.. +.+..+.||+.+|-.- .++
T Consensus 406 ~-iK~~vf~~le~~~-----~~~aIlASNTSsl~i~---~ia~~~~~------p~r~ig~HFfnP~~~m--------~LV 462 (742)
T 3zwc_A 406 N-LKKKVFAELSALC-----KPGAFLCTNTSALNVD---DIASSTDR------PQLVIGTHFFSPAHVM--------RLL 462 (742)
T ss_dssp H-HHHHHHHHHHHHS-----CTTCEEEECCSSSCHH---HHHTTSSC------GGGEEEEECCSSTTTC--------CEE
T ss_pred H-HHHHHHHHHhhcC-----CCCceEEecCCcCChH---HHHhhcCC------ccccccccccCCCCCC--------ceE
Confidence 7 554 444444444 23333 3345555555 45544332 1111235555543221 122
Q ss_pred -EEec--CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022170 137 -FMVG--GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 208 (301)
Q Consensus 137 -~~~g--g~~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 208 (301)
++.| .++++++.+..+.+.+++.++.+.+ ..+... |=+. ...++|++.+.+. |.+++++.+++
T Consensus 463 Evi~g~~Ts~e~~~~~~~~~~~lgK~pV~vkd-~pGFi~----NRi~---~~~~~ea~~l~~e-G~~~~~id~a~ 528 (742)
T 3zwc_A 463 EVIPSRYSSPTTIATVMSLSKKIGKIGVVVGN-CYGFVG----NRML---APYYNQGFFLLEE-GSKPEDVDGVL 528 (742)
T ss_dssp EEEECSSCCHHHHHHHHHHHHHTTCEEEECCC-STTTTH----HHHH---HHHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHhCCCCcccCC-CCCccH----HHHh---hHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 2333 2789999999999999999988875 233333 3322 3556888888766 67877776665
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-08 Score=88.79 Aligned_cols=93 Identities=15% Similarity=0.219 Sum_probs=75.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||+++|++|...|++|++|||++++.+. ....+++++++++||+|++++|...+ .+.++.. ..++. .+++
T Consensus 133 IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~~~~~l~ell~~aDiV~l~~P~t~~-t~~li~~--~~l~~--mk~g 202 (290)
T 3gvx_A 133 IGRRVAHLAKAFGMRVIAYTRSSVDQNV-----DVISESPADLFRQSDFVLIAIPLTDK-TRGMVNS--RLLAN--ARKN 202 (290)
T ss_dssp HHHHHHHHHHHHTCEEEEECSSCCCTTC-----SEECSSHHHHHHHCSEEEECCCCCTT-TTTCBSH--HHHTT--CCTT
T ss_pred hhHHHHHHHHhhCcEEEEEecccccccc-----ccccCChHHHhhccCeEEEEeecccc-chhhhhH--HHHhh--hhcC
Confidence 6999999999999999999999876432 34567999999999999999997665 6766632 24443 4578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||+|+..+-..+.+.+.+.+
T Consensus 203 ailIN~aRG~~vd~~aL~~aL~~ 225 (290)
T 3gvx_A 203 LTIVNVARADVVSKPDMIGFLKE 225 (290)
T ss_dssp CEEEECSCGGGBCHHHHHHHHHH
T ss_pred ceEEEeehhcccCCcchhhhhhh
Confidence 89999999998888888888865
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-08 Score=90.11 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=76.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.++|+.|...|++|++|||++++.+.+.+.|+... ++.+++++||+|++++|.+.. .+.++.. .+++. .+++
T Consensus 166 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~-t~~~i~~--~~~~~--mk~g 239 (330)
T 2gcg_A 166 IGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPA-TEGLCNK--DFFQK--MKET 239 (330)
T ss_dssp HHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTT-TTTCBSH--HHHHH--SCTT
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChH-HHHhhCH--HHHhc--CCCC
Confidence 7999999999999999999999877766666677665 899999999999999997765 6666531 23332 3467
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|++|+..+.+...+.+.+.+
T Consensus 240 ailIn~srg~~v~~~aL~~aL~~ 262 (330)
T 2gcg_A 240 AVFINISRGDVVNQDDLYQALAS 262 (330)
T ss_dssp CEEEECSCGGGBCHHHHHHHHHH
T ss_pred cEEEECCCCcccCHHHHHHHHHc
Confidence 89999999988777788777764
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=98.61 E-value=2.7e-08 Score=88.88 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=77.9
Q ss_pred CcHHHHHHHH-hCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~-~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||.++|+.|. ..|++|++|||++++.+...+.|+..+.++++++++||+|++++|.... .+.++.. ..++. .++
T Consensus 174 IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~-t~~li~~--~~l~~--mk~ 248 (348)
T 2w2k_A 174 IQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKL-THHLIDE--AFFAA--MKP 248 (348)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGG-GTTCBCH--HHHHH--SCT
T ss_pred HHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChH-HHHHhhH--HHHhc--CCC
Confidence 7999999999 9999999999998776666555777666899999999999999998765 6666642 23332 346
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
+.++||+|+..+.....+.+.+.+
T Consensus 249 gailin~srg~~vd~~aL~~aL~~ 272 (348)
T 2w2k_A 249 GSRIVNTARGPVISQDALIAALKS 272 (348)
T ss_dssp TEEEEECSCGGGBCHHHHHHHHHT
T ss_pred CCEEEECCCCchhCHHHHHHHHHh
Confidence 789999999988777788887764
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2.6e-08 Score=88.86 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=80.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|++|++|||++...+...+.|+...+++++++++||+|++++|.... .+.++.. ..++. .+++
T Consensus 175 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~-t~~li~~--~~l~~--mk~g 249 (351)
T 3jtm_A 175 IGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEK-TRGMFNK--ELIGK--LKKG 249 (351)
T ss_dssp HHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTT-TTTCBSH--HHHHH--SCTT
T ss_pred HHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHH-HHHhhcH--HHHhc--CCCC
Confidence 69999999999999999999998766666666887778999999999999999997665 6666532 24443 4578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++...+-....+.+.+.+
T Consensus 250 ailIN~aRG~~vde~aL~~aL~~ 272 (351)
T 3jtm_A 250 VLIVNNARGAIMERQAVVDAVES 272 (351)
T ss_dssp EEEEECSCGGGBCHHHHHHHHHH
T ss_pred CEEEECcCchhhCHHHHHHHHHh
Confidence 99999999888777888888765
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.1e-08 Score=87.66 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=78.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.++|++|...|++|++|||++. .+...+.|+..++++++++++||+|++++|...+ .+.++.. ..++. .+++
T Consensus 171 IG~~vA~~l~~~G~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~-t~~li~~--~~l~~--mk~g 244 (352)
T 3gg9_A 171 IGQLVAGYGRAFGMNVLVWGRENS-KERARADGFAVAESKDALFEQSDVLSVHLRLNDE-TRSIITV--ADLTR--MKPT 244 (352)
T ss_dssp HHHHHHHHHHHTTCEEEEECSHHH-HHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTT-TTTCBCH--HHHTT--SCTT
T ss_pred HHHHHHHHHHhCCCEEEEECCCCC-HHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHH-HHHhhCH--HHHhh--CCCC
Confidence 699999999999999999999864 3556667888778999999999999999997665 6666532 34443 4578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++...+-....+.+.+.+
T Consensus 245 ailIN~aRg~~vd~~aL~~aL~~ 267 (352)
T 3gg9_A 245 ALFVNTSRAELVEENGMVTALNR 267 (352)
T ss_dssp CEEEECSCGGGBCTTHHHHHHHH
T ss_pred cEEEECCCchhhcHHHHHHHHHh
Confidence 89999999888777788887765
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=5.2e-08 Score=86.88 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=76.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|++|++|||++++. .....|+..+.+++++++.||+|++++|...+ .+.++.. ..++. .+++
T Consensus 179 IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~-t~~li~~--~~l~~--mk~g 252 (347)
T 1mx3_A 179 VGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEH-NHHLIND--FTVKQ--MRQG 252 (347)
T ss_dssp HHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTT-CTTSBSH--HHHTT--SCTT
T ss_pred HHHHHHHHHHHCCCEEEEECCCcchh-hHhhcCCeecCCHHHHHhcCCEEEEcCCCCHH-HHHHhHH--HHHhc--CCCC
Confidence 79999999999999999999987652 22344666667899999999999999997765 6766632 23443 3578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||+++..+-..+.+.+.+.+
T Consensus 253 ailIN~arg~~vd~~aL~~aL~~ 275 (347)
T 1mx3_A 253 AFLVNTARGGLVDEKALAQALKE 275 (347)
T ss_dssp EEEEECSCTTSBCHHHHHHHHHH
T ss_pred CEEEECCCChHHhHHHHHHHHHh
Confidence 89999999998888888888865
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=98.57 E-value=5.2e-07 Score=82.70 Aligned_cols=190 Identities=14% Similarity=0.106 Sum_probs=110.1
Q ss_pred CcHHHHHHHHhC------CCeEEEEcCC-hhhHHHHHhCCCCCC----CCHHHHHhcCCEEEEecCCCccchhhhhcCCC
Q 022170 1 MGFRMASNLMKA------GYKMAVHDVN-CNVMKMFSDMGVPTK----ETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 69 (301)
Q Consensus 1 mG~~lA~~L~~~------G~~V~~~dr~-~~~~~~l~~~g~~~~----~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~ 69 (301)
||.++|++|.++ |++|++++|+ +...+...+.|+... .++.+++++||+||+++|+.. ..+++.+
T Consensus 65 MG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~~--~~eVl~e-- 140 (525)
T 3fr7_A 65 QGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAA--QADNYEK-- 140 (525)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCHHH--HHHHHHH--
T ss_pred HHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCChHH--HHHHHHH--
Confidence 799999999999 9999877665 444556667788763 689999999999999999644 5567753
Q ss_pred ccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCce-EEecccCCCHH-----Hhh-----ccce-EE
Q 022170 70 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV-MLDAPVSGGVL-----AAE-----AGTL-TF 137 (301)
Q Consensus 70 ~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~pv~g~~~-----~a~-----~g~l-~~ 137 (301)
+.+. ..++++++.+.+.......+-...++ .++. +.-+|-..+.. ... .|.. .+
T Consensus 141 -I~p~--LK~GaILs~AaGf~I~~le~~~i~~p-----------~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~li 206 (525)
T 3fr7_A 141 -IFSH--MKPNSILGLSHGFLLGHLQSAGLDFP-----------KNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 206 (525)
T ss_dssp -HHHH--SCTTCEEEESSSHHHHHHHHTTCCCC-----------TTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEE
T ss_pred -HHHh--cCCCCeEEEeCCCCHHHHhhhcccCC-----------CCCcEEEEecCCCchhHHHHHhcccccccCCccEEE
Confidence 4433 24677888888755442221000111 1233 33456555443 111 3443 34
Q ss_pred EecCC--HHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022170 138 MVGGS--EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC-N-NLTMAVSMLGVSEALTLGQSLGISASTLTKIL 208 (301)
Q Consensus 138 ~~gg~--~~~~~~~~~ll~~~~~~~~~~g~~g~a~~~k~~-~-N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 208 (301)
.+..| .+..+.+..++..+|...+.-...-.-.-.++. . -.+.....+++.-++..+.+.|++++..+...
T Consensus 207 Av~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtvLsG~~pAlieA~~d~lVe~G~~pe~Ay~~~ 281 (525)
T 3fr7_A 207 AVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKNT 281 (525)
T ss_dssp EEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhhhcCcHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 44444 368899999999999863211111000000010 0 01112222233334455667899988766553
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=4.4e-08 Score=87.12 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=75.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.++|+.|...|++|++|||++++ +...+.|+.. .++.+++++||+|++|+|.+.. ++.++.. .+++. .+++
T Consensus 161 iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~~-t~~~i~~--~~~~~--mk~~ 233 (334)
T 2dbq_A 161 IGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEF-KPLEDLLRESDFVVLAVPLTRE-TYHLINE--ERLKL--MKKT 233 (334)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEE-CCHHHHHHHCSEEEECCCCCTT-TTTCBCH--HHHHH--SCTT
T ss_pred HHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCccc-CCHHHHHhhCCEEEECCCCChH-HHHhhCH--HHHhc--CCCC
Confidence 7999999999999999999999887 5555556654 5899999999999999998775 6666531 22332 3467
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||+|+..+.....+.+.+.+
T Consensus 234 ailIn~srg~~v~~~aL~~aL~~ 256 (334)
T 2dbq_A 234 AILINIARGKVVDTNALVKALKE 256 (334)
T ss_dssp CEEEECSCGGGBCHHHHHHHHHH
T ss_pred cEEEECCCCcccCHHHHHHHHHh
Confidence 89999999888777778777764
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=6.3e-08 Score=85.55 Aligned_cols=97 Identities=10% Similarity=0.102 Sum_probs=75.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcC-ChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDV-NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr-~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||.++|++|...|++|++||| ++++. ...+.|+...+++++++++||+|++++|...+ .+.++.. ..++. .++
T Consensus 157 IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~-t~~~i~~--~~l~~--mk~ 230 (320)
T 1gdh_A 157 IGQALAKRAQGFDMDIDYFDTHRASSS-DEASYQATFHDSLDSLLSVSQFFSLNAPSTPE-TRYFFNK--ATIKS--LPQ 230 (320)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSCCCHH-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTT-TTTCBSH--HHHTT--SCT
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcChh-hhhhcCcEEcCCHHHHHhhCCEEEEeccCchH-HHhhcCH--HHHhh--CCC
Confidence 799999999999999999999 88763 44455776666899999999999999997765 6666532 23333 356
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
+.++||+++..+-....+.+.+.+
T Consensus 231 gailIn~arg~~vd~~aL~~aL~~ 254 (320)
T 1gdh_A 231 GAIVVNTARGDLVDNELVVAALEA 254 (320)
T ss_dssp TEEEEECSCGGGBCHHHHHHHHHH
T ss_pred CcEEEECCCCcccCHHHHHHHHHh
Confidence 789999999877666677777654
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-07 Score=83.95 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=75.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|++|++|||++++ +...+.|+.. .++++++++||+|++|+|...+ .+.++.. ..++. .+++
T Consensus 176 IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~-t~~li~~--~~l~~--mk~g 248 (335)
T 2g76_A 176 IGREVATRMQSFGMKTIGYDPIISP-EVSASFGVQQ-LPLEEIWPLCDFITVHTPLLPS-TTGLLND--NTFAQ--CKKG 248 (335)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTCEE-CCHHHHGGGCSEEEECCCCCTT-TTTSBCH--HHHTT--SCTT
T ss_pred HHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-CCHHHHHhcCCEEEEecCCCHH-HHHhhCH--HHHhh--CCCC
Confidence 6899999999999999999998876 3455667654 4899999999999999998766 6766632 24443 3578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||+++..+-....+.+.+.+
T Consensus 249 ailIN~arg~vvd~~aL~~aL~~ 271 (335)
T 2g76_A 249 VRVVNCARGGIVDEGALLRALQS 271 (335)
T ss_dssp EEEEECSCTTSBCHHHHHHHHHH
T ss_pred cEEEECCCccccCHHHHHHHHHh
Confidence 99999999887777777777764
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.52 E-value=8e-08 Score=86.30 Aligned_cols=98 Identities=17% Similarity=0.204 Sum_probs=79.1
Q ss_pred CcHHHHHHHHhCCCe-EEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~-V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||..+|++|...|++ |++|||++.+.+...+.|+....+++++++.||+|++++|.... .+.++.. ..++. .++
T Consensus 175 IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~-t~~li~~--~~l~~--mk~ 249 (364)
T 2j6i_A 175 IGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAG-TKGLINK--ELLSK--FKK 249 (364)
T ss_dssp HHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTT-TTTCBCH--HHHTT--SCT
T ss_pred HHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChH-HHHHhCH--HHHhh--CCC
Confidence 699999999999997 99999998777666677777667899999999999999998765 6666532 23433 356
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
+.++||+++..+-....+.+.+.+
T Consensus 250 ga~lIn~arG~~vd~~aL~~aL~~ 273 (364)
T 2j6i_A 250 GAWLVNTARGAICVAEDVAAALES 273 (364)
T ss_dssp TEEEEECSCGGGBCHHHHHHHHHH
T ss_pred CCEEEECCCCchhCHHHHHHHHHc
Confidence 789999999888777788888765
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.52 E-value=8.1e-08 Score=86.82 Aligned_cols=98 Identities=12% Similarity=0.106 Sum_probs=77.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|++|++|||++.+.+...+.|+..+.++++++++||+|++++|...+ .+.++.. ..++. .+++
T Consensus 202 IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~-t~~li~~--~~l~~--mk~g 276 (393)
T 2nac_A 202 IGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPE-TEHMIND--ETLKL--FKRG 276 (393)
T ss_dssp HHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTT-TTTCBSH--HHHTT--SCTT
T ss_pred HHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchH-HHHHhhH--HHHhh--CCCC
Confidence 69999999999999999999997666555556777667899999999999999997665 6666632 23433 3578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++...+-....+.+.+.+
T Consensus 277 ailIN~aRG~~vde~aL~~aL~~ 299 (393)
T 2nac_A 277 AYIVNTARGKLCDRDAVARALES 299 (393)
T ss_dssp EEEEECSCGGGBCHHHHHHHHHT
T ss_pred CEEEECCCchHhhHHHHHHHHHc
Confidence 99999999877777778887764
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.52 E-value=9.2e-08 Score=83.97 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=75.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|++|++|||++++ +...+.|+.. .++++++++||+|++++|.... .+.++.. ..++. .+++
T Consensus 153 IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~p~~~~-t~~li~~--~~l~~--mk~g 225 (307)
T 1wwk_A 153 IGYQVAKIANALGMNILLYDPYPNE-ERAKEVNGKF-VDLETLLKESDVVTIHVPLVES-TYHLINE--ERLKL--MKKT 225 (307)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEE-CCHHHHHHHCSEEEECCCCSTT-TTTCBCH--HHHHH--SCTT
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCccc-cCHHHHHhhCCEEEEecCCChH-HhhhcCH--HHHhc--CCCC
Confidence 6999999999999999999999887 4556667755 4899999999999999997765 6666532 23333 3567
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||+++..+-....+.+.+.+
T Consensus 226 a~lin~arg~~vd~~aL~~aL~~ 248 (307)
T 1wwk_A 226 AILINTSRGPVVDTNALVKALKE 248 (307)
T ss_dssp CEEEECSCGGGBCHHHHHHHHHH
T ss_pred eEEEECCCCcccCHHHHHHHHHh
Confidence 89999999877666777777764
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.2e-07 Score=85.72 Aligned_cols=96 Identities=10% Similarity=0.164 Sum_probs=75.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||+++|++|...|++|++||++++. +...+.|+..+ ++++++++||+|++|+|.... .+.++.. ..++. .+++
T Consensus 153 IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~-t~~~i~~--~~~~~--~k~g 225 (529)
T 1ygy_A 153 IGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLGIELL-SLDDLLARADFISVHLPKTPE-TAGLIDK--EALAK--TKPG 225 (529)
T ss_dssp HHHHHHHHHHTTTCEEEEECTTSCH-HHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTT-TTTCBCH--HHHTT--SCTT
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCcEEc-CHHHHHhcCCEEEECCCCchH-HHHHhCH--HHHhC--CCCC
Confidence 6999999999999999999998753 34455577655 899999999999999997755 7777643 23333 3568
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||+++..+-....+.+.+.+
T Consensus 226 ~ilin~arg~iv~~~aL~~al~~ 248 (529)
T 1ygy_A 226 VIIVNAARGGLVDEAALADAITG 248 (529)
T ss_dssp EEEEECSCTTSBCHHHHHHHHHT
T ss_pred CEEEECCCCchhhHHHHHHHHHc
Confidence 99999999888777777777754
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.51 E-value=9.1e-08 Score=84.24 Aligned_cols=96 Identities=10% Similarity=0.070 Sum_probs=75.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.++|++|...|++|++|||++++. ...+.|+.. .+++++++++|+|++++|...+ .+.++.. ..++. .+++
T Consensus 153 IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~-~~l~ell~~aDvVvl~~P~~~~-t~~li~~--~~l~~--mk~g 225 (313)
T 2ekl_A 153 IGTKVGIIANAMGMKVLAYDILDIRE-KAEKINAKA-VSLEELLKNSDVISLHVTVSKD-AKPIIDY--PQFEL--MKDN 225 (313)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTT-SCCSBCH--HHHHH--SCTT
T ss_pred HHHHHHHHHHHCCCEEEEECCCcchh-HHHhcCcee-cCHHHHHhhCCEEEEeccCChH-HHHhhCH--HHHhc--CCCC
Confidence 79999999999999999999998875 355667765 4899999999999999997765 6665532 23332 3567
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||+++..+-....+.+.+.+
T Consensus 226 a~lIn~arg~~vd~~aL~~aL~~ 248 (313)
T 2ekl_A 226 VIIVNTSRAVAVNGKALLDYIKK 248 (313)
T ss_dssp EEEEESSCGGGBCHHHHHHHHHT
T ss_pred CEEEECCCCcccCHHHHHHHHHc
Confidence 89999999888777788887764
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=6e-08 Score=85.96 Aligned_cols=97 Identities=21% Similarity=0.252 Sum_probs=76.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||+++|++|...|++|++|||++.+.+...+.|+.. .+++++++.||+|++++|.... .+.++.. ..++. .+++
T Consensus 156 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~-t~~li~~--~~l~~--mk~g 229 (330)
T 4e5n_A 156 IGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQ-VACSELFASSDFILLALPLNAD-TLHLVNA--ELLAL--VRPG 229 (330)
T ss_dssp HHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEE-CCHHHHHHHCSEEEECCCCSTT-TTTCBCH--HHHTT--SCTT
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCcee-CCHHHHHhhCCEEEEcCCCCHH-HHHHhCH--HHHhh--CCCC
Confidence 699999999999999999999985555555556654 4899999999999999997665 6666632 34443 4578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++...+-....+.+.+.+
T Consensus 230 ailIN~arg~~vd~~aL~~aL~~ 252 (330)
T 4e5n_A 230 ALLVNPCRGSVVDEAAVLAALER 252 (330)
T ss_dssp EEEEECSCGGGBCHHHHHHHHHH
T ss_pred cEEEECCCCchhCHHHHHHHHHh
Confidence 99999999888777888888765
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=98.50 E-value=7.8e-08 Score=84.79 Aligned_cols=96 Identities=13% Similarity=0.172 Sum_probs=75.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||+++|++|...|++|++|||++...+.+. +.....++++++++||+|++++|...+ .+.++.. ..++. .+++
T Consensus 151 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--~~~~~~~l~ell~~aDvV~l~lPlt~~-T~~li~~--~~l~~--mk~g 223 (324)
T 3hg7_A 151 IGQHIAHTGKHFGMKVLGVSRSGRERAGFD--QVYQLPALNKMLAQADVIVSVLPATRE-THHLFTA--SRFEH--CKPG 223 (324)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCCCTTCS--EEECGGGHHHHHHTCSEEEECCCCCSS-STTSBCT--TTTTC--SCTT
T ss_pred HHHHHHHHHHhCCCEEEEEcCChHHhhhhh--cccccCCHHHHHhhCCEEEEeCCCCHH-HHHHhHH--HHHhc--CCCC
Confidence 699999999999999999999985443221 122346899999999999999997766 7777643 34543 4578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++...+-....+.+.+.+
T Consensus 224 ailIN~aRG~~vde~aL~~aL~~ 246 (324)
T 3hg7_A 224 AILFNVGRGNAINEGDLLTALRT 246 (324)
T ss_dssp CEEEECSCGGGBCHHHHHHHHHT
T ss_pred cEEEECCCchhhCHHHHHHHHHc
Confidence 99999999988888888888865
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-07 Score=84.70 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=75.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|++|++|||++...+... |...++++++++++||+|++++|...+ .+.++.. ..++. .+++
T Consensus 184 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g~~~~~~l~ell~~sDvV~l~~Plt~~-T~~li~~--~~l~~--mk~g 256 (345)
T 4g2n_A 184 IGRAIATRARGFGLAIHYHNRTRLSHALEE--GAIYHDTLDSLLGASDIFLIAAPGRPE-LKGFLDH--DRIAK--IPEG 256 (345)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSCCCHHHHT--TCEECSSHHHHHHTCSEEEECSCCCGG-GTTCBCH--HHHHH--SCTT
T ss_pred hHHHHHHHHHHCCCEEEEECCCCcchhhhc--CCeEeCCHHHHHhhCCEEEEecCCCHH-HHHHhCH--HHHhh--CCCC
Confidence 689999999999999999999875543332 666677999999999999999997665 6666532 23433 4578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++....-....+.+.+.+
T Consensus 257 ailIN~aRG~~vde~aL~~aL~~ 279 (345)
T 4g2n_A 257 AVVINISRGDLINDDALIEALRS 279 (345)
T ss_dssp EEEEECSCGGGBCHHHHHHHHHH
T ss_pred cEEEECCCCchhCHHHHHHHHHh
Confidence 99999998888777788887765
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=5.6e-08 Score=86.20 Aligned_cols=93 Identities=12% Similarity=0.138 Sum_probs=73.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||+++|+.|...|++|++|||++++.. |.....++++++++||+|++++|.... .+.++.. ..++. .+++
T Consensus 175 iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g~~~~~~l~ell~~aDvVil~vP~~~~-t~~li~~--~~l~~--mk~g 244 (333)
T 3ba1_A 175 IGLAVAERAEAFDCPISYFSRSKKPNT-----NYTYYGSVVELASNSDILVVACPLTPE-TTHIINR--EVIDA--LGPK 244 (333)
T ss_dssp HHHHHHHHHHTTTCCEEEECSSCCTTC-----CSEEESCHHHHHHTCSEEEECSCCCGG-GTTCBCH--HHHHH--HCTT
T ss_pred HHHHHHHHHHHCCCEEEEECCCchhcc-----CceecCCHHHHHhcCCEEEEecCCChH-HHHHhhH--HHHhc--CCCC
Confidence 799999999999999999999987542 555567899999999999999997665 6776632 23332 2467
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||+|+..+.....+.+.+.+
T Consensus 245 ailIn~srG~~vd~~aL~~aL~~ 267 (333)
T 3ba1_A 245 GVLINIGRGPHVDEPELVSALVE 267 (333)
T ss_dssp CEEEECSCGGGBCHHHHHHHHHH
T ss_pred CEEEECCCCchhCHHHHHHHHHc
Confidence 89999999988877888888765
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-07 Score=83.21 Aligned_cols=92 Identities=10% Similarity=0.079 Sum_probs=73.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|++|++|||+++ +. +.....+++++++.||+|++++|.... .+.++.. ..++. .+++
T Consensus 135 IG~~~A~~l~~~G~~V~~~dr~~~--~~----~~~~~~~l~ell~~aDvV~l~~P~~~~-t~~~i~~--~~l~~--mk~g 203 (303)
T 1qp8_A 135 IGTRVGKILAALGAQVRGFSRTPK--EG----PWRFTNSLEEALREARAAVCALPLNKH-TRGLVKY--QHLAL--MAED 203 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCC--CS----SSCCBSCSHHHHTTCSEEEECCCCSTT-TTTCBCH--HHHTT--SCTT
T ss_pred HHHHHHHHHHHCCCEEEEECCCcc--cc----CcccCCCHHHHHhhCCEEEEeCcCchH-HHHHhCH--HHHhh--CCCC
Confidence 799999999999999999999886 22 444567899999999999999998766 7777642 34443 4578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||+|+..+-....+.+.+.+
T Consensus 204 ailin~srg~~vd~~aL~~aL~~ 226 (303)
T 1qp8_A 204 AVFVNVGRAEVLDRDGVLRILKE 226 (303)
T ss_dssp CEEEECSCGGGBCHHHHHHHHHH
T ss_pred CEEEECCCCcccCHHHHHHHHHh
Confidence 89999999887777778777764
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.48 E-value=9.3e-08 Score=84.85 Aligned_cols=93 Identities=15% Similarity=0.205 Sum_probs=56.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||+++|++|...|++|++|||++++. .+.....++++++++||+|++++|.... .+.++.. ..++. .+++
T Consensus 182 IG~~vA~~l~~~G~~V~~~dr~~~~~-----~~~~~~~sl~ell~~aDvVil~vP~t~~-t~~li~~--~~l~~--mk~g 251 (340)
T 4dgs_A 182 IGRALASRAEAFGMSVRYWNRSTLSG-----VDWIAHQSPVDLARDSDVLAVCVAASAA-TQNIVDA--SLLQA--LGPE 251 (340)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSCCTT-----SCCEECSSHHHHHHTCSEEEECC-----------CH--HHHHH--TTTT
T ss_pred HHHHHHHHHHHCCCEEEEEcCCcccc-----cCceecCCHHHHHhcCCEEEEeCCCCHH-HHHHhhH--HHHhc--CCCC
Confidence 79999999999999999999998752 3445567999999999999999997665 6766632 23433 3567
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++...+-....+.+.+.+
T Consensus 252 ailIN~aRG~vvde~aL~~aL~~ 274 (340)
T 4dgs_A 252 GIVVNVARGNVVDEDALIEALKS 274 (340)
T ss_dssp CEEEECSCC--------------
T ss_pred CEEEECCCCcccCHHHHHHHHHc
Confidence 89999999998888888887764
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.45 E-value=6e-08 Score=85.59 Aligned_cols=96 Identities=11% Similarity=0.219 Sum_probs=74.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|++|++|||+++..+.+... ....++++++++||+|++++|...+ .+.++.. ..++. .+++
T Consensus 148 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--~~~~~l~ell~~aDvV~l~lPlt~~-t~~li~~--~~l~~--mk~g 220 (324)
T 3evt_A 148 IGQSLAAKASALGMHVIGVNTTGHPADHFHET--VAFTATADALATANFIVNALPLTPT-THHLFST--ELFQQ--TKQQ 220 (324)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCCCCTTCSEE--EEGGGCHHHHHHCSEEEECCCCCGG-GTTCBSH--HHHHT--CCSC
T ss_pred HHHHHHHHHHhCCCEEEEECCCcchhHhHhhc--cccCCHHHHHhhCCEEEEcCCCchH-HHHhcCH--HHHhc--CCCC
Confidence 69999999999999999999998765433211 2246889999999999999997666 6776632 34443 3578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||+|...+-....+.+.+.+
T Consensus 221 ailIN~aRG~~vd~~aL~~aL~~ 243 (324)
T 3evt_A 221 PMLINIGRGPAVDTTALMTALDH 243 (324)
T ss_dssp CEEEECSCGGGBCHHHHHHHHHT
T ss_pred CEEEEcCCChhhhHHHHHHHHHh
Confidence 89999999988888888888865
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-07 Score=84.45 Aligned_cols=95 Identities=18% Similarity=0.215 Sum_probs=73.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||+++|+.|...|++|++|||++++ +...+.|+... ++++++++||+|++|+|.... ++.++.. ..++. .+++
T Consensus 157 iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~e~l~~aDiVil~vp~~~~-t~~~i~~--~~~~~--mk~g 229 (333)
T 2d0i_A 157 IGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARYM-DIDELLEKSDIVILALPLTRD-TYHIINE--ERVKK--LEGK 229 (333)
T ss_dssp HHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEEC-CHHHHHHHCSEEEECCCCCTT-TTTSBCH--HHHHH--TBTC
T ss_pred HHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCceec-CHHHHHhhCCEEEEcCCCChH-HHHHhCH--HHHhh--CCCC
Confidence 7999999999999999999999886 44444566544 889999999999999998755 6776642 12332 3467
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
++||+|+..+-....+.+.+.+
T Consensus 230 -ilin~srg~~vd~~aL~~aL~~ 251 (333)
T 2d0i_A 230 -YLVNIGRGALVDEKAVTEAIKQ 251 (333)
T ss_dssp -EEEECSCGGGBCHHHHHHHHHT
T ss_pred -EEEECCCCcccCHHHHHHHHHc
Confidence 9999998888777777777754
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=5.2e-07 Score=80.08 Aligned_cols=95 Identities=11% Similarity=0.088 Sum_probs=74.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|++|++|||++++. +.+ .+....++++++++||+|++++|.... .+.++.. ..++. .+++
T Consensus 157 IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~-t~~li~~--~~l~~--mk~g 228 (333)
T 1j4a_A 157 IGQVFMQIMEGFGAKVITYDIFRNPE--LEK-KGYYVDSLDDLYKQADVISLHVPDVPA-NVHMIND--ESIAK--MKQD 228 (333)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCHH--HHH-TTCBCSCHHHHHHHCSEEEECSCCCGG-GTTCBSH--HHHHH--SCTT
T ss_pred HHHHHHHHHHHCCCEEEEECCCcchh--HHh-hCeecCCHHHHHhhCCEEEEcCCCcHH-HHHHHhH--HHHhh--CCCC
Confidence 69999999999999999999998765 222 355555899999999999999998766 6666532 23332 3567
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++...+-....+.+.+.+
T Consensus 229 a~lIn~arg~~vd~~aL~~aL~~ 251 (333)
T 1j4a_A 229 VVIVNVSRGPLVDTDAVIRGLDS 251 (333)
T ss_dssp EEEEECSCGGGBCHHHHHHHHHH
T ss_pred cEEEECCCCcccCHHHHHHHHHh
Confidence 89999999888777888888765
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.8e-07 Score=81.60 Aligned_cols=96 Identities=20% Similarity=0.151 Sum_probs=74.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|++|++|||++. .+...+.|+.. .+++++++.||+|++++|...+ .+.++.. ..++. .+++
T Consensus 187 IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt~~-T~~li~~--~~l~~--mk~g 259 (365)
T 4hy3_A 187 LGKALRRVLSGFRARIRVFDPWLP-RSMLEENGVEP-ASLEDVLTKSDFIFVVAAVTSE-NKRFLGA--EAFSS--MRRG 259 (365)
T ss_dssp HHHHHHHHHTTSCCEEEEECSSSC-HHHHHHTTCEE-CCHHHHHHSCSEEEECSCSSCC----CCCH--HHHHT--SCTT
T ss_pred ccHHHHHhhhhCCCEEEEECCCCC-HHHHhhcCeee-CCHHHHHhcCCEEEEcCcCCHH-HHhhcCH--HHHhc--CCCC
Confidence 699999999999999999999863 34455567654 5899999999999999998776 7776632 34443 4578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++...+-....+.+.+.+
T Consensus 260 ailIN~aRG~~vde~aL~~aL~~ 282 (365)
T 4hy3_A 260 AAFILLSRADVVDFDALMAAVSS 282 (365)
T ss_dssp CEEEECSCGGGSCHHHHHHHHHT
T ss_pred cEEEECcCCchhCHHHHHHHHHc
Confidence 89999999888878888888765
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=3.2e-07 Score=81.48 Aligned_cols=94 Identities=16% Similarity=0.114 Sum_probs=73.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|++|++|||+++.. .+.+... .++++++++||+|++++|.... .+.++.. ..++. .+++
T Consensus 159 IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~~~-~~l~ell~~aDvV~l~~Plt~~-t~~li~~--~~l~~--mk~g 229 (343)
T 2yq5_A 159 IGSAVAEIFSAMGAKVIAYDVAYNPE---FEPFLTY-TDFDTVLKEADIVSLHTPLFPS-TENMIGE--KQLKE--MKKS 229 (343)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCGG---GTTTCEE-CCHHHHHHHCSEEEECCCCCTT-TTTCBCH--HHHHH--SCTT
T ss_pred HHHHHHHHHhhCCCEEEEECCChhhh---hhccccc-cCHHHHHhcCCEEEEcCCCCHH-HHHHhhH--HHHhh--CCCC
Confidence 69999999999999999999998651 2223333 4899999999999999997665 6666632 23443 3578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++...+-..+.+.+.+.+
T Consensus 230 ailIN~aRg~~vd~~aL~~aL~~ 252 (343)
T 2yq5_A 230 AYLINCARGELVDTGALIKALQD 252 (343)
T ss_dssp CEEEECSCGGGBCHHHHHHHHHH
T ss_pred cEEEECCCChhhhHHHHHHHHHc
Confidence 89999999988888888888765
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-07 Score=83.35 Aligned_cols=96 Identities=15% Similarity=0.217 Sum_probs=73.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||+.+|++|...|++|++|||+++..+.+... ....++++++++||+|++++|...+ .+.++.. ..++. .+++
T Consensus 150 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~~Plt~~-t~~li~~--~~l~~--mk~g 222 (315)
T 3pp8_A 150 LGAKVAESLQAWGFPLRCWSRSRKSWPGVESY--VGREELRAFLNQTRVLINLLPNTAQ-TVGIINS--ELLDQ--LPDG 222 (315)
T ss_dssp HHHHHHHHHHTTTCCEEEEESSCCCCTTCEEE--ESHHHHHHHHHTCSEEEECCCCCGG-GTTCBSH--HHHTT--SCTT
T ss_pred HHHHHHHHHHHCCCEEEEEcCCchhhhhhhhh--cccCCHHHHHhhCCEEEEecCCchh-hhhhccH--HHHhh--CCCC
Confidence 69999999999999999999998754322111 1125789999999999999997665 6766632 24443 4578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||++...+-....+.+.+.+
T Consensus 223 ailIN~aRG~~vd~~aL~~aL~~ 245 (315)
T 3pp8_A 223 AYVLNLARGVHVQEADLLAALDS 245 (315)
T ss_dssp EEEEECSCGGGBCHHHHHHHHHH
T ss_pred CEEEECCCChhhhHHHHHHHHHh
Confidence 99999999888777888888765
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.7e-07 Score=79.57 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=70.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|++|++|||++++.. + ...++++++++||+|++++|.... .+.++.. ..++. .+++
T Consensus 155 IG~~~A~~l~~~G~~V~~~d~~~~~~~------~-~~~~l~ell~~aDvV~l~~p~~~~-t~~li~~--~~l~~--mk~g 222 (311)
T 2cuk_A 155 IGQAVAKRALAFGMRVVYHARTPKPLP------Y-PFLSLEELLKEADVVSLHTPLTPE-THRLLNR--ERLFA--MKRG 222 (311)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSSS------S-CBCCHHHHHHHCSEEEECCCCCTT-TTTCBCH--HHHTT--SCTT
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcccc------c-ccCCHHHHHhhCCEEEEeCCCChH-HHhhcCH--HHHhh--CCCC
Confidence 699999999999999999999987653 2 246899999999999999998765 6666632 23433 3567
Q ss_pred eEEEEeCCCCHHHHHHHHHHHh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~ 102 (301)
.++||+|+..+-....+.+.+.
T Consensus 223 a~lin~srg~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 223 AILLNTARGALVDTEALVEALR 244 (311)
T ss_dssp CEEEECSCGGGBCHHHHHHHHT
T ss_pred cEEEECCCCCccCHHHHHHHHh
Confidence 8999999987766667777664
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=3.9e-07 Score=82.85 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=74.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||+.+|+++...|++|++|||++... ..++....+++++++.||+|++++|...+ .+.++.. ..++. .+++
T Consensus 156 IG~~vA~~l~~~G~~V~~~d~~~~~~----~~~~~~~~~l~ell~~aDvV~l~~P~t~~-t~~li~~--~~l~~--mk~g 226 (404)
T 1sc6_A 156 IGTQLGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPS-TKNMMGA--KEISL--MKPG 226 (404)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTT-TTTCBCH--HHHHH--SCTT
T ss_pred HHHHHHHHHHHCCCEEEEEcCCchhc----cCCceecCCHHHHHhcCCEEEEccCCChH-HHHHhhH--HHHhh--cCCC
Confidence 69999999999999999999986532 12355567999999999999999998776 7777642 24443 4578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||+|+..+-....+.+.+.+
T Consensus 227 a~lIN~aRg~~vd~~aL~~aL~~ 249 (404)
T 1sc6_A 227 SLLINASRGTVVDIPALADALAS 249 (404)
T ss_dssp EEEEECSCSSSBCHHHHHHHHHT
T ss_pred eEEEECCCChHHhHHHHHHHHHc
Confidence 99999999988777888887764
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.28 E-value=3.7e-07 Score=70.43 Aligned_cols=94 Identities=14% Similarity=0.196 Sum_probs=67.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..++++|.+.||+|+.+|++.+++ .|.....|++|+.+..|++++|+|+ .. +.+++.+ +.+. ..+
T Consensus 29 ~G~~~~~~L~~~G~~V~~vnp~~~~i-----~G~~~~~s~~el~~~vDlvii~vp~-~~-v~~v~~~---~~~~---g~~ 95 (138)
T 1y81_A 29 YGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPP-KV-GLQVAKE---AVEA---GFK 95 (138)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCH-HH-HHHHHHH---HHHT---TCC
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCeE-----CCeeecCCHHHhCCCCCEEEEEeCH-HH-HHHHHHH---HHHc---CCC
Confidence 68899999999999977776664332 5888889999998899999999994 55 7888754 2321 124
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEec
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 121 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (301)
.++++++|.. +++.+..++. ++.+++.
T Consensus 96 ~i~~~~~~~~----~~l~~~a~~~----------Gi~~igp 122 (138)
T 1y81_A 96 KLWFQPGAES----EEIRRFLEKA----------GVEYSFG 122 (138)
T ss_dssp EEEECTTSCC----HHHHHHHHHH----------TCEEECS
T ss_pred EEEEcCccHH----HHHHHHHHHC----------CCEEEcC
Confidence 5888887753 4555555431 2677763
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.24 E-value=5e-07 Score=81.99 Aligned_cols=94 Identities=16% Similarity=0.158 Sum_probs=70.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||+.+|+++...|++|++||+++... ..+.....++++++++||+|++++|...+ .+.++.. ..++. .+++
T Consensus 167 IG~~vA~~l~~~G~~V~~yd~~~~~~----~~~~~~~~sl~ell~~aDvV~lhvPlt~~-T~~li~~--~~l~~--mk~g 237 (416)
T 3k5p_A 167 IGSQVGNLAESLGMTVRYYDTSDKLQ----YGNVKPAASLDELLKTSDVVSLHVPSSKS-TSKLITE--AKLRK--MKKG 237 (416)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTCCCC----BTTBEECSSHHHHHHHCSEEEECCCC------CCBCH--HHHHH--SCTT
T ss_pred HHHHHHHHHHHCCCEEEEECCcchhc----ccCcEecCCHHHHHhhCCEEEEeCCCCHH-HhhhcCH--HHHhh--CCCC
Confidence 69999999999999999999985432 12344567999999999999999998765 6666532 23443 4578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||+|...+-....+.+.+.+
T Consensus 238 ailIN~aRG~vvd~~aL~~aL~~ 260 (416)
T 3k5p_A 238 AFLINNARGSDVDLEALAKVLQE 260 (416)
T ss_dssp EEEEECSCTTSBCHHHHHHHHHT
T ss_pred cEEEECCCChhhhHHHHHHHHHc
Confidence 99999999988888888888865
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=9.2e-07 Score=78.46 Aligned_cols=94 Identities=11% Similarity=0.030 Sum_probs=73.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|++|++|||++++. + +..+. ..+++++++.||+|++++|...+ .+.++.. ..++. .+++
T Consensus 156 IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~P~~~~-t~~li~~--~~l~~--mk~g 226 (333)
T 1dxy_A 156 IGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPDFD-YVSLEDLFKQSDVIDLHVPGIEQ-NTHIINE--AAFNL--MKPG 226 (333)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSS--C-CTTCE-ECCHHHHHHHCSEEEECCCCCGG-GTTSBCH--HHHHH--SCTT
T ss_pred HHHHHHHHHHHCCCEEEEECCCcchh--h-Hhccc-cCCHHHHHhcCCEEEEcCCCchh-HHHHhCH--HHHhh--CCCC
Confidence 68999999999999999999987653 1 22233 34899999999999999998776 6666532 23433 3578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||+|+..+-..+.+.+.+.+
T Consensus 227 a~lIn~srg~~vd~~aL~~aL~~ 249 (333)
T 1dxy_A 227 AIVINTARPNLIDTQAMLSNLKS 249 (333)
T ss_dssp EEEEECSCTTSBCHHHHHHHHHT
T ss_pred cEEEECCCCcccCHHHHHHHHHh
Confidence 99999999988878888888765
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.17 E-value=3e-06 Score=73.14 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=60.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||.+++..|.+.|++|++|||++++.+.+.+. |+...+++.++++++|+||.|+|.+. ..++..... .+. ..+
T Consensus 140 ~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~--~~~~~~~i~--~~~--l~~ 213 (275)
T 2hk9_A 140 ASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGL--KDEDPEIFN--YDL--IKK 213 (275)
T ss_dssp HHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTS--STTCCCSSC--GGG--CCT
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCC--CCCCCCCCC--HHH--cCC
Confidence 68999999999999999999999998888654 55555578888899999999999654 222111111 111 235
Q ss_pred CeEEEEeCC
Q 022170 80 PQLLIDSST 88 (301)
Q Consensus 80 ~~ivid~st 88 (301)
+++++|+++
T Consensus 214 g~~viDv~~ 222 (275)
T 2hk9_A 214 DHVVVDIIY 222 (275)
T ss_dssp TSEEEESSS
T ss_pred CCEEEEcCC
Confidence 689999988
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.17 E-value=1e-06 Score=78.07 Aligned_cols=94 Identities=17% Similarity=0.087 Sum_probs=72.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|++|...|++|++|||++++. + +.++. ..++++++++||+|++++|.... .+.++.. ..++. .+++
T Consensus 157 IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~p~t~~-t~~li~~--~~l~~--mk~g 227 (331)
T 1xdw_A 157 IGRVAAQIFHGMGATVIGEDVFEIKG--I-EDYCT-QVSLDEVLEKSDIITIHAPYIKE-NGAVVTR--DFLKK--MKDG 227 (331)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCCS--C-TTTCE-ECCHHHHHHHCSEEEECCCCCTT-TCCSBCH--HHHHT--SCTT
T ss_pred HHHHHHHHHHHCCCEEEEECCCccHH--H-Hhccc-cCCHHHHHhhCCEEEEecCCchH-HHHHhCH--HHHhh--CCCC
Confidence 68999999999999999999988654 2 22232 34899999999999999997665 6666532 23433 3578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++||+|+..+-....+.+.+.+
T Consensus 228 a~lin~srg~~vd~~aL~~aL~~ 250 (331)
T 1xdw_A 228 AILVNCARGQLVDTEAVIEAVES 250 (331)
T ss_dssp EEEEECSCGGGBCHHHHHHHHHH
T ss_pred cEEEECCCcccccHHHHHHHHHh
Confidence 99999999888777888888765
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.3e-06 Score=75.79 Aligned_cols=94 Identities=16% Similarity=0.158 Sum_probs=69.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCcc---chhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH---QVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~---~~~~v~~~~~~~l~~~~~ 77 (301)
||..+|++|...|++|++||++++... ......++++++++||+|++++|...+ ..+.++. ...++. .
T Consensus 130 IG~~vA~~l~a~G~~V~~~d~~~~~~~-----~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~--~~~l~~--m 200 (381)
T 3oet_A 130 VGSRLQTRLEALGIRTLLCDPPRAARG-----DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLAD--ETLIRR--L 200 (381)
T ss_dssp HHHHHHHHHHHTTCEEEEECHHHHHTT-----CCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBC--HHHHHH--S
T ss_pred HHHHHHHHHHHCCCEEEEECCChHHhc-----cCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcC--HHHHhc--C
Confidence 699999999999999999998654321 233457899999999999999995431 0233332 123433 3
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
+++.++||+|...+-....+.+.+.+
T Consensus 201 k~gailIN~aRG~vvde~aL~~aL~~ 226 (381)
T 3oet_A 201 KPGAILINACRGPVVDNAALLARLNA 226 (381)
T ss_dssp CTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 57899999999988888888888865
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=5.5e-06 Score=70.96 Aligned_cols=91 Identities=10% Similarity=0.030 Sum_probs=63.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCcc-chhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSH-QVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~-~~~~v~~~~~~~l~~~~~~ 78 (301)
||.+++..|.+.|++|++|||++++.+.+.+. |.. .+++.++ +++|+|++|+|.+.. .+..++. ...+ .
T Consensus 127 ~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~--~~~l-----~ 197 (263)
T 2d5c_A 127 AGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPSASPLP--AELF-----P 197 (263)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCCSSC--GGGS-----C
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCCCCCCC--HHHc-----C
Confidence 68999999999999999999999988877653 444 4677788 899999999996531 0112221 1122 3
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHh
Q 022170 79 RPQLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~~~~ 102 (301)
++++++|+++.... + ++.+...
T Consensus 198 ~g~~viD~~~~p~~-t-~l~~~a~ 219 (263)
T 2d5c_A 198 EEGAAVDLVYRPLW-T-RFLREAK 219 (263)
T ss_dssp SSSEEEESCCSSSS-C-HHHHHHH
T ss_pred CCCEEEEeecCCcc-c-HHHHHHH
Confidence 56799999876333 3 3545444
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.08 E-value=3.2e-06 Score=73.85 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=60.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC--CCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT--KETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~--~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||..+|+.|...|++|++|||++++.+.+.+.|... ..++.++++++|+|++++|.... -++.+ +. .+
T Consensus 168 iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i-~~~~~-------~~--mk 237 (300)
T 2rir_A 168 TGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSMIL-NQTVL-------SS--MT 237 (300)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSCCB-CHHHH-------TT--SC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChhhh-CHHHH-------Hh--CC
Confidence 689999999999999999999998887776667643 25788889999999999996431 12222 21 24
Q ss_pred CCeEEEEeCCCC
Q 022170 79 RPQLLIDSSTID 90 (301)
Q Consensus 79 ~~~ivid~st~~ 90 (301)
++.++||++...
T Consensus 238 ~g~~lin~a~g~ 249 (300)
T 2rir_A 238 PKTLILDLASRP 249 (300)
T ss_dssp TTCEEEECSSTT
T ss_pred CCCEEEEEeCCC
Confidence 568999998643
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.6e-06 Score=67.47 Aligned_cols=86 Identities=16% Similarity=0.199 Sum_probs=61.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCCh--hhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNC--NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~--~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||..++++|.+.||+|+.+|++. +.+ .|..+..|++++....|++++|+|+ .. +.+++.+ +.+. .
T Consensus 28 ~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~G~~~~~sl~el~~~~Dlvii~vp~-~~-v~~v~~~---~~~~---g 94 (145)
T 2duw_A 28 PSYRVMKYLLDQGYHVIPVSPKVAGKTL-----LGQQGYATLADVPEKVDMVDVFRNS-EA-AWGVAQE---AIAI---G 94 (145)
T ss_dssp HHHHHHHHHHHHTCCEEEECSSSTTSEE-----TTEECCSSTTTCSSCCSEEECCSCS-TH-HHHHHHH---HHHH---T
T ss_pred hHHHHHHHHHHCCCEEEEeCCccccccc-----CCeeccCCHHHcCCCCCEEEEEeCH-HH-HHHHHHH---HHHc---C
Confidence 68899999999999977766654 332 4788888999988899999999995 55 7888754 2221 1
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 79 RPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.+.+++++++. .+++.+.+++
T Consensus 95 ~~~i~i~~~~~----~~~l~~~a~~ 115 (145)
T 2duw_A 95 AKTLWLQLGVI----NEQAAVLARE 115 (145)
T ss_dssp CCEEECCTTCC----CHHHHHHHHT
T ss_pred CCEEEEcCChH----HHHHHHHHHH
Confidence 24588887766 3455555543
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.1e-05 Score=71.99 Aligned_cols=92 Identities=13% Similarity=0.060 Sum_probs=67.7
Q ss_pred CcHHHHHHHHh--CCCeEEEEcCChhhHHHHHhC-----C--CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcc
Q 022170 1 MGFRMASNLMK--AGYKMAVHDVNCNVMKMFSDM-----G--VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGL 71 (301)
Q Consensus 1 mG~~lA~~L~~--~G~~V~~~dr~~~~~~~l~~~-----g--~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~ 71 (301)
||..++..|.. ...+|.+|||++++.+++.+. | +..+++++++++++|+|++|+|++. ...++.. ..
T Consensus 140 ~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~--~~pvl~~--~~ 215 (350)
T 1x7d_A 140 QSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA--YATIITP--DM 215 (350)
T ss_dssp THHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS--EEEEECG--GG
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC--CCceecH--HH
Confidence 67888888754 357899999999999888764 5 3456899999999999999999753 3344432 12
Q ss_pred ccCCCCCCCeEEEEeCCCCHHHHHHHHHHHh
Q 022170 72 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 72 l~~~~~~~~~ivid~st~~p~~~~~~~~~~~ 102 (301)
+ .+|+.|+++++..|. .+++...+.
T Consensus 216 l-----~~G~~V~~vgs~~p~-~~El~~~~~ 240 (350)
T 1x7d_A 216 L-----EPGMHLNAVGGDCPG-KTELHADVL 240 (350)
T ss_dssp C-----CTTCEEEECSCCBTT-BEEECHHHH
T ss_pred c-----CCCCEEEECCCCCCC-ceeeCHHHH
Confidence 2 357899999998887 556555443
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.9e-06 Score=63.95 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=57.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCC--CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVP--TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~--~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||..++..|.+.|++|++|||++++.+.+.+. +.. ...++.+++.++|+||.|+|.+.. + +.. ..+
T Consensus 32 iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~~-~---~~~--~~l----- 100 (144)
T 3oj0_A 32 LASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKTP-I---VEE--RSL----- 100 (144)
T ss_dssp HHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSSC-S---BCG--GGC-----
T ss_pred HHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCCc-E---eeH--HHc-----
Confidence 68889999988999999999999998876643 433 456888999999999999996542 2 111 122
Q ss_pred CCCeEEEEeCC
Q 022170 78 VRPQLLIDSST 88 (301)
Q Consensus 78 ~~~~ivid~st 88 (301)
.++.+++|.+.
T Consensus 101 ~~g~~vid~~~ 111 (144)
T 3oj0_A 101 MPGKLFIDLGN 111 (144)
T ss_dssp CTTCEEEECCS
T ss_pred CCCCEEEEccC
Confidence 24678888864
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.94 E-value=6.9e-06 Score=73.80 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=69.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCcc---chhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH---QVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~---~~~~v~~~~~~~l~~~~~ 77 (301)
||..+|++|...|++|++||++++.. ..+.. ..++++++++||+|++++|.... ..+.++. +..++. .
T Consensus 127 IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~--~~~l~~--m 197 (380)
T 2o4c_A 127 VGGRLVEVLRGLGWKVLVCDPPRQAR----EPDGE-FVSLERLLAEADVISLHTPLNRDGEHPTRHLLD--EPRLAA--L 197 (380)
T ss_dssp HHHHHHHHHHHTTCEEEEECHHHHHH----STTSC-CCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBC--HHHHHT--S
T ss_pred HHHHHHHHHHHCCCEEEEEcCChhhh----ccCcc-cCCHHHHHHhCCEEEEeccCccccccchhhhcC--HHHHhh--C
Confidence 69999999999999999999876543 23433 46899999999999999996431 0233332 123433 3
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
+++.++||+|+..+-....+.+.+.+
T Consensus 198 k~gailIN~sRG~vvd~~aL~~aL~~ 223 (380)
T 2o4c_A 198 RPGTWLVNASRGAVVDNQALRRLLEG 223 (380)
T ss_dssp CTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 57899999999888777888888764
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.82 E-value=3.1e-05 Score=67.35 Aligned_cols=79 Identities=18% Similarity=0.279 Sum_probs=60.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC--CCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||..+|+.|...|++|++|||++++.+.+.+.|+... .++.+.++++|+|++++|.... -++.+. . ..
T Consensus 166 iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i-~~~~l~-------~--mk 235 (293)
T 3d4o_A 166 VGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALVV-TANVLA-------E--MP 235 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSCCB-CHHHHH-------H--SC
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChHHh-CHHHHH-------h--cC
Confidence 6899999999999999999999988777766676543 4788889999999999996432 222221 1 23
Q ss_pred CCeEEEEeCCC
Q 022170 79 RPQLLIDSSTI 89 (301)
Q Consensus 79 ~~~ivid~st~ 89 (301)
++.++||++..
T Consensus 236 ~~~~lin~ar~ 246 (293)
T 3d4o_A 236 SHTFVIDLASK 246 (293)
T ss_dssp TTCEEEECSST
T ss_pred CCCEEEEecCC
Confidence 56799999863
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.6e-05 Score=64.00 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=49.6
Q ss_pred CcHHHHHHHHhC-CCeEEEEcCChhhHHHHHhCCCCCC----CCH---HHH--HhcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTK----ETP---FEV--AEASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g~~~~----~s~---~e~--~~~adiVi~~vp~~~~~~~~v~ 65 (301)
||..+|+.|.+. ||+|+++|+++++.+.+.+.|.... ++. .++ +.++|+||+|+|++.. ...++
T Consensus 50 ~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~-~~~~~ 123 (183)
T 3c85_A 50 IGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQG-NQTAL 123 (183)
T ss_dssp HHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSHHH-HHHHH
T ss_pred HHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCChHH-HHHHH
Confidence 689999999999 9999999999999999888876532 222 233 5678999999997654 44443
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.75 E-value=2.5e-05 Score=68.04 Aligned_cols=93 Identities=6% Similarity=-0.073 Sum_probs=62.5
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CC---CCC--CCHHHHHhcCCEEEEecCCCccch--hhhhcCCCcc
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GV---PTK--ETPFEVAEASDVVITMLPSSSHQV--LDVYNGPNGL 71 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~---~~~--~s~~e~~~~adiVi~~vp~~~~~~--~~v~~~~~~~ 71 (301)
||.+++..|.+.|+ +|++|||++++++.+.+. +. ... +++.+.+.++|+||.|+|.+.. - ..+... ...
T Consensus 152 ~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~-~~~~~~~i~-~~~ 229 (297)
T 2egg_A 152 GARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMH-PRVEVQPLS-LER 229 (297)
T ss_dssp HHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCS-SCCSCCSSC-CTT
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCC-CCCCCCCCC-HHH
Confidence 68899999999998 999999999998888754 22 221 2455667899999999996542 1 111111 111
Q ss_pred ccCCCCCCCeEEEEeCCCCHHHHHHHHHHHh
Q 022170 72 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 72 l~~~~~~~~~ivid~st~~p~~~~~~~~~~~ 102 (301)
..++.+++|+++. |..+. +.+...
T Consensus 230 -----l~~~~~v~D~~y~-P~~T~-ll~~A~ 253 (297)
T 2egg_A 230 -----LRPGVIVSDIIYN-PLETK-WLKEAK 253 (297)
T ss_dssp -----CCTTCEEEECCCS-SSSCH-HHHHHH
T ss_pred -----cCCCCEEEEcCCC-CCCCH-HHHHHH
Confidence 2356899999984 55443 444444
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.72 E-value=2.7e-05 Score=57.40 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=62.8
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHHhCCCCC-------CCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||..++..|.+.| ++|++++|++++.+.+...++.. ..++.++++++|+||.|+|... ...++.. ..
T Consensus 16 iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~--~~~~~~~---~~ 90 (118)
T 3ic5_A 16 IGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL--TPIIAKA---AK 90 (118)
T ss_dssp HHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG--HHHHHHH---HH
T ss_pred HHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh--hHHHHHH---HH
Confidence 6899999999999 99999999999998887555322 1234566778999999998543 3444422 12
Q ss_pred cCCCCCCCeEEEEeCCCCHHHHHHHHHHHh
Q 022170 73 QGGNSVRPQLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~ 102 (301)
..+..++|.|+ ++...+++.+...
T Consensus 91 -----~~g~~~~~~~~-~~~~~~~~~~~~~ 114 (118)
T 3ic5_A 91 -----AAGAHYFDLTE-DVAATNAVRALVE 114 (118)
T ss_dssp -----HTTCEEECCCS-CHHHHHHHHHHHH
T ss_pred -----HhCCCEEEecC-cHHHHHHHHHHHH
Confidence 23456777765 4556666655543
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.71 E-value=3.7e-05 Score=69.42 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=60.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC-----------------------------CCHHHHHhcCCEEE
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-----------------------------ETPFEVAEASDVVI 51 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-----------------------------~s~~e~~~~adiVi 51 (301)
||..+++.+...|.+|++||+++++.+.+.+.|.... .+++++++++|+||
T Consensus 201 iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI 280 (405)
T 4dio_A 201 AGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVI 280 (405)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHHHHhcCCCEEE
Confidence 5889999999999999999999999888887775421 25678889999999
Q ss_pred EecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCC
Q 022170 52 TMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 88 (301)
Q Consensus 52 ~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 88 (301)
.|+..+......++. +..++. ..+|.+|||++-
T Consensus 281 ~tvlipg~~ap~Lvt--~emv~~--Mk~GsVIVDvA~ 313 (405)
T 4dio_A 281 TTALIPGRPAPRLVT--REMLDS--MKPGSVVVDLAV 313 (405)
T ss_dssp ECCCCSSSCCCCCBC--HHHHTT--SCTTCEEEETTG
T ss_pred ECCcCCCCCCCEEec--HHHHhc--CCCCCEEEEEeC
Confidence 997433210122221 234443 457889999883
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=97.65 E-value=4.1e-05 Score=68.57 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=59.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCC-------------------------CHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE-------------------------TPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~-------------------------s~~e~~~~adiVi~~vp 55 (301)
||..+|+.+...|.+|++|||++++.+.+.+.|+++.. ++++.++++|+||.++.
T Consensus 195 iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~ 274 (381)
T 3p2y_A 195 AGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITKFDIVITTAL 274 (381)
T ss_dssp HHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCC
Confidence 58889999999999999999999999988887765432 46678899999999973
Q ss_pred CCccchhhhhcCCCccccCCCCCCCeEEEEeCC
Q 022170 56 SSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 88 (301)
Q Consensus 56 ~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 88 (301)
.+......++. +..++. ..++.++||++-
T Consensus 275 iPg~~ap~Lvt--~emv~~--MkpGsVIVDvA~ 303 (381)
T 3p2y_A 275 VPGRPAPRLVT--AAAATG--MQPGSVVVDLAG 303 (381)
T ss_dssp CTTSCCCCCBC--HHHHHT--SCTTCEEEETTG
T ss_pred CCCcccceeec--HHHHhc--CCCCcEEEEEeC
Confidence 32210112221 123333 346789999873
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0001 Score=64.99 Aligned_cols=84 Identities=15% Similarity=0.161 Sum_probs=60.7
Q ss_pred CcHHHHHHHHh--CCCeEEEEcCChhhHHHHHhC------CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLMK--AGYKMAVHDVNCNVMKMFSDM------GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~--~G~~V~~~dr~~~~~~~l~~~------g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||..++..|.+ ...+|.+|||++++.+++.+. .+. ++++++++ ++|+|++|+|... .++.. ..+
T Consensus 136 ~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~----pv~~~--~~l 207 (322)
T 1omo_A 136 QAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK----PVVKA--EWV 207 (322)
T ss_dssp HHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS----CCBCG--GGC
T ss_pred HHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC----ceecH--HHc
Confidence 46778888876 346899999999999888753 234 67899999 9999999999643 23221 122
Q ss_pred cCCCCCCCeEEEEeCCCCHHHHHHHH
Q 022170 73 QGGNSVRPQLLIDSSTIDPQTSRNIS 98 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~~~~~~ 98 (301)
.+|+.|++.++..|. .+++.
T Consensus 208 -----~~G~~V~~ig~~~p~-~~el~ 227 (322)
T 1omo_A 208 -----EEGTHINAIGADGPG-KQELD 227 (322)
T ss_dssp -----CTTCEEEECSCCSTT-CCCBC
T ss_pred -----CCCeEEEECCCCCCC-ccccC
Confidence 357899999888887 34443
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00022 Score=64.77 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=61.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.++|+.|...|.+|++||+++.+.......|... .+++++++.+|+|+++..+.. ++.. ..++. .+++
T Consensus 222 IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~-~sL~eal~~ADVVilt~gt~~-----iI~~--e~l~~--MK~g 291 (436)
T 3h9u_A 222 VGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQV-LLVEDVVEEAHIFVTTTGNDD-----IITS--EHFPR--MRDD 291 (436)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSC-----SBCT--TTGGG--CCTT
T ss_pred HHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCee-cCHHHHHhhCCEEEECCCCcC-----ccCH--HHHhh--cCCC
Confidence 589999999999999999999998877666677654 489999999999998766433 2221 23332 3577
Q ss_pred eEEEEeCCCCH
Q 022170 81 QLLIDSSTIDP 91 (301)
Q Consensus 81 ~ivid~st~~p 91 (301)
.++||++...+
T Consensus 292 AIVINvgRg~v 302 (436)
T 3h9u_A 292 AIVCNIGHFDT 302 (436)
T ss_dssp EEEEECSSSGG
T ss_pred cEEEEeCCCCC
Confidence 89999986554
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.50 E-value=5e-05 Score=66.79 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=42.3
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHH----h------CC--CCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----D------MG--VPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~----~------~g--~~~~~s~~e~~~~adiVi~~vp 55 (301)
||+++|..|+++|+ +|++||+++++++... . .. +..++++ +++++||+||++++
T Consensus 15 ~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg 81 (317)
T 2ewd_A 15 IGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITAS 81 (317)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCC
T ss_pred HHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence 79999999999999 9999999998776531 1 11 2333566 77899999999994
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.49 E-value=9.6e-05 Score=56.71 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=47.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC----CCH---HHH-HhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETP---FEV-AEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s~---~e~-~~~adiVi~~vp~~~~ 59 (301)
||..+|+.|.+.|++|+++|+++++++.+.+.|.... ++. .++ +.++|+|++++|++..
T Consensus 18 ~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~ 84 (140)
T 3fwz_A 18 VGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYE 84 (140)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHH
Confidence 5899999999999999999999999999988776431 222 222 4689999999997754
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00033 Score=62.14 Aligned_cols=94 Identities=17% Similarity=0.275 Sum_probs=70.3
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||..++..|.+. +++|. ++||++++.+.+.+. |...+++++++++ +.|+|++|+|+... .+++.. .++.
T Consensus 15 ~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h--~~~~~~---al~~- 88 (344)
T 3euw_A 15 IGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTH--VDLITR---AVER- 88 (344)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGH--HHHHHH---HHHT-
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhh--HHHHHH---HHHc-
Confidence 578889999886 67766 789999998887665 7777889999998 89999999997654 333321 2321
Q ss_pred CCCCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 76 NSVRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 76 ~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
+..++++.. +.++..++++.+...+
T Consensus 89 ---gk~v~~EKP~~~~~~~~~~l~~~a~~ 114 (344)
T 3euw_A 89 ---GIPALCEKPIDLDIEMVRACKEKIGD 114 (344)
T ss_dssp ---TCCEEECSCSCSCHHHHHHHHHHHGG
T ss_pred ---CCcEEEECCCCCCHHHHHHHHHHHHh
Confidence 234666654 7788999999888765
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00024 Score=65.84 Aligned_cols=87 Identities=15% Similarity=0.116 Sum_probs=63.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|+.|...|.+|++|||++.+.......|... .+++++++.+|+|++++.+.. ++.. ..++. .+++
T Consensus 288 IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~l~ell~~aDiVi~~~~t~~-----lI~~--~~l~~--MK~g 357 (494)
T 3d64_A 288 VGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VTMEYAADKADIFVTATGNYH-----VINH--DHMKA--MRHN 357 (494)
T ss_dssp HHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECSSSSC-----SBCH--HHHHH--CCTT
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CCHHHHHhcCCEEEECCCccc-----ccCH--HHHhh--CCCC
Confidence 589999999999999999999998764445556654 589999999999999985433 2211 12222 3567
Q ss_pred eEEEEeCCCCHH-HHHHH
Q 022170 81 QLLIDSSTIDPQ-TSRNI 97 (301)
Q Consensus 81 ~ivid~st~~p~-~~~~~ 97 (301)
.++||++...+. ....+
T Consensus 358 AilINvgrg~veID~~aL 375 (494)
T 3d64_A 358 AIVCNIGHFDSEIDVAST 375 (494)
T ss_dssp EEEEECSSSSCSBCCGGG
T ss_pred cEEEEcCCCcchhchHHH
Confidence 899999987663 33344
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00024 Score=65.55 Aligned_cols=89 Identities=16% Similarity=0.108 Sum_probs=66.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||..+|+.|...|.+|++||+++.+.......|... .+++++++.||+|++++.+. .++.. ..++. .+++
T Consensus 268 IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-~~l~ell~~aDiVi~~~~t~-----~lI~~--~~l~~--MK~g 337 (479)
T 1v8b_A 268 VGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNV-----DVIKL--EHLLK--MKNN 337 (479)
T ss_dssp HHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSS-----SSBCH--HHHTT--CCTT
T ss_pred HHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-cCHHHHHhcCCEEEECCChh-----hhcCH--HHHhh--cCCC
Confidence 689999999999999999999998765555667654 58999999999999997433 22221 12332 3567
Q ss_pred eEEEEeCCCCHH-HHHHHHH
Q 022170 81 QLLIDSSTIDPQ-TSRNISA 99 (301)
Q Consensus 81 ~ivid~st~~p~-~~~~~~~ 99 (301)
.++||++...++ ....+.+
T Consensus 338 ailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 338 AVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp CEEEECSSTTTSBCHHHHHT
T ss_pred cEEEEeCCCCccccchhhhc
Confidence 899999988774 5566655
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=6.7e-05 Score=64.58 Aligned_cols=94 Identities=14% Similarity=0.054 Sum_probs=59.7
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCC-CCCCCHHHHHhcCCEEEEecCCCcc-chhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGV-PTKETPFEVAEASDVVITMLPSSSH-QVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~-~~~~s~~e~~~~adiVi~~vp~~~~-~~~~v~~~~~~~l~~~~~ 77 (301)
||.+++..|.+.|+ +|++++|++++.+++.+... ...+++.+++.++|+||.|+|..-. .....+ . ... .
T Consensus 128 ~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l-~-~~~-----l 200 (277)
T 3don_A 128 ASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDSVI-S-LNR-----L 200 (277)
T ss_dssp HHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CCSS-C-CTT-----C
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcCCC-C-HHH-----c
Confidence 58899999999998 89999999999887764321 1123455667899999999996421 011111 1 111 2
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++.+++|++.. |..+ .+.+..++
T Consensus 201 ~~~~~V~D~vY~-P~~T-~ll~~A~~ 224 (277)
T 3don_A 201 ASHTLVSDIVYN-PYKT-PILIEAEQ 224 (277)
T ss_dssp CSSCEEEESCCS-SSSC-HHHHHHHH
T ss_pred CCCCEEEEecCC-CCCC-HHHHHHHH
Confidence 356799999877 4333 34444443
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00013 Score=63.85 Aligned_cols=57 Identities=21% Similarity=0.116 Sum_probs=45.3
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhHHHHHhC----------CCCC-CCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM----------GVPT-KETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~----------g~~~-~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||+++|..|+++| ++|++|||++++++.+... .... ++++ ++++++|+||+|+|.+.
T Consensus 12 ~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~~ 81 (309)
T 1hyh_A 12 VGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNIK 81 (309)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCGG
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCcc
Confidence 7999999999999 8999999999888665431 1233 4566 77889999999999654
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00021 Score=62.57 Aligned_cols=84 Identities=24% Similarity=0.330 Sum_probs=58.2
Q ss_pred CcHHHHHHHHhC--CCeEEEEcCChhhHHHHHhC-----CCC--CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcc
Q 022170 1 MGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDM-----GVP--TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGL 71 (301)
Q Consensus 1 mG~~lA~~L~~~--G~~V~~~dr~~~~~~~l~~~-----g~~--~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~ 71 (301)
||..++..|.+. ..+|.+|||+ +.+++.+. |+. .+ +++++++++|+|++|+|... .++.. ..
T Consensus 132 ~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~~----pvl~~--~~ 202 (313)
T 3hdj_A 132 QGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRSTT----PLFAG--QA 202 (313)
T ss_dssp HHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCSS----CSSCG--GG
T ss_pred HHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCCC----cccCH--HH
Confidence 567788888763 4689999999 55555432 553 45 99999999999999999543 23321 22
Q ss_pred ccCCCCCCCeEEEEeCCCCHHHHHHHHH
Q 022170 72 LQGGNSVRPQLLIDSSTIDPQTSRNISA 99 (301)
Q Consensus 72 l~~~~~~~~~ivid~st~~p~~~~~~~~ 99 (301)
+ .+|..|++.++..|+. +++..
T Consensus 203 l-----~~G~~V~~vGs~~p~~-~El~~ 224 (313)
T 3hdj_A 203 L-----RAGAFVGAIGSSLPHT-RELDD 224 (313)
T ss_dssp C-----CTTCEEEECCCSSTTC-CCCCH
T ss_pred c-----CCCcEEEECCCCCCch-hhcCH
Confidence 3 3678999999988863 44443
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0005 Score=61.22 Aligned_cols=94 Identities=13% Similarity=0.215 Sum_probs=69.5
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHH--hcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVA--EASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~--~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||..++..|.+. +++|. +||+++++.+.+.+. |+..++++++++ .+.|+|++|+|+... ...+.. .++
T Consensus 16 ~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h-~~~~~~----al~-- 88 (354)
T 3db2_A 16 WAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKH-AEVIEQ----CAR-- 88 (354)
T ss_dssp HHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSH-HHHHHH----HHH--
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHH-HHHHHH----HHH--
Confidence 577888888876 77855 789999998887654 788889999999 469999999998764 333321 232
Q ss_pred CCCCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 76 NSVRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 76 ~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
.+..++++.. +.+++.++++.+...+
T Consensus 89 --~gk~vl~EKP~~~~~~~~~~l~~~a~~ 115 (354)
T 3db2_A 89 --SGKHIYVEKPISVSLDHAQRIDQVIKE 115 (354)
T ss_dssp --TTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred --cCCEEEEccCCCCCHHHHHHHHHHHHH
Confidence 1234666654 7788999999887765
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00051 Score=61.14 Aligned_cols=94 Identities=14% Similarity=0.137 Sum_probs=69.1
Q ss_pred CcHHHHHHHHhC--CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKA--GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~--G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
||..++..|.+. +++|. ++|+++++.+.+.+. |+..+++++++++ +.|+|++|+|+... .+++.. .++
T Consensus 24 ~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h--~~~~~~---al~- 97 (354)
T 3q2i_A 24 IANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLH--PTQSIE---CSE- 97 (354)
T ss_dssp THHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGH--HHHHHH---HHH-
T ss_pred HHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHH--HHHHHH---HHH-
Confidence 688899999987 67755 889999998887654 7878899999987 79999999997654 333321 232
Q ss_pred CCCCCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 75 GNSVRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 75 ~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
.+..++++.- +.++..++++.+...+
T Consensus 98 ---~gk~v~~EKP~a~~~~~~~~l~~~a~~ 124 (354)
T 3q2i_A 98 ---AGFHVMTEKPMATRWEDGLEMVKAADK 124 (354)
T ss_dssp ---TTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred ---CCCCEEEeCCCcCCHHHHHHHHHHHHH
Confidence 1234555543 6788888898887765
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00048 Score=60.67 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=68.7
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||..++..|.+. +++|. ++|+++++.+.+.+. |+. .++++++++ +.|+|++|+|+... . +++.. .++
T Consensus 14 ~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h-~-~~~~~---al~-- 85 (331)
T 4hkt_A 14 IGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTH-A-DLIER---FAR-- 85 (331)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGH-H-HHHHH---HHH--
T ss_pred HHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhH-H-HHHHH---HHH--
Confidence 578889999885 67876 789999998887654 777 889999987 79999999997654 3 33321 232
Q ss_pred CCCCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 76 NSVRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 76 ~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
.+..++++.. +.++++++++.+..++
T Consensus 86 --~gk~v~~EKP~~~~~~~~~~l~~~a~~ 112 (331)
T 4hkt_A 86 --AGKAIFCEKPIDLDAERVRACLKVVSD 112 (331)
T ss_dssp --TTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred --cCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 1234666553 7889999999887765
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00076 Score=59.43 Aligned_cols=94 Identities=10% Similarity=0.116 Sum_probs=69.2
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhC-CC-CCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GV-PTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
||..++..|.+. +++|. ++|+++++.+.+.+. |+ ..+++++++++ +.|+|++|+|+... ...+.. .++.
T Consensus 16 ~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h-~~~~~~----al~~ 90 (330)
T 3e9m_A 16 IVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGH-YSAAKL----ALSQ 90 (330)
T ss_dssp THHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGH-HHHHHH----HHHT
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHH-HHHHHH----HHHC
Confidence 688899999885 67766 789999998887654 66 57889999987 79999999997754 333221 2321
Q ss_pred CCCCCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 75 GNSVRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 75 ~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
+..++++.. +.+++.++++.+..++
T Consensus 91 ----gk~vl~EKP~~~~~~e~~~l~~~a~~ 116 (330)
T 3e9m_A 91 ----GKPVLLEKPFTLNAAEAEELFAIAQE 116 (330)
T ss_dssp ----TCCEEECSSCCSSHHHHHHHHHHHHH
T ss_pred ----CCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 224666664 7788999998887765
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0005 Score=63.82 Aligned_cols=80 Identities=15% Similarity=0.122 Sum_probs=62.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchh-hhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVL-DVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~-~v~~~~~~~l~~~~~~~ 79 (301)
||..+|+.+...|++|++||+++.+.+...+.|+. ..++.+++..+|+|+.|+++... +. +.+. . ..+
T Consensus 285 IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~-~~~l~e~l~~aDvVi~atgt~~~-i~~~~l~----~-----mk~ 353 (494)
T 3ce6_A 285 VGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFD-VVTVEEAIGDADIVVTATGNKDI-IMLEHIK----A-----MKD 353 (494)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECSSSSCS-BCHHHHH----H-----SCT
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCE-EecHHHHHhCCCEEEECCCCHHH-HHHHHHH----h-----cCC
Confidence 58899999999999999999999998888888876 35788899999999999986653 33 2222 1 235
Q ss_pred CeEEEEeCCCCH
Q 022170 80 PQLLIDSSTIDP 91 (301)
Q Consensus 80 ~~ivid~st~~p 91 (301)
+.++++++....
T Consensus 354 ggilvnvG~~~~ 365 (494)
T 3ce6_A 354 HAILGNIGHFDN 365 (494)
T ss_dssp TCEEEECSSSGG
T ss_pred CcEEEEeCCCCC
Confidence 679999886543
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00031 Score=53.65 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=44.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCCHHHH----HhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPFEV----AEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~----~~s~~e~----~~~adiVi~~vp~~~ 58 (301)
+|..+|+.|.+.||+|+++|+++++++.+.+.|... .++.+.. +.++|+||+++|++.
T Consensus 17 iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~ 82 (141)
T 3llv_A 17 AGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDE 82 (141)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHH
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHH
Confidence 589999999999999999999999999888776532 1222221 357899999999654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00056 Score=51.80 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=44.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCC----CCCHHH---H-HhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT----KETPFE---V-AEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~----~~s~~e---~-~~~adiVi~~vp~~~ 58 (301)
||..++..|.+.|++|+++||++++.+.+.+. +... ..+... . +.++|+||+|+|++.
T Consensus 15 iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~ 81 (140)
T 1lss_A 15 VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE 81 (140)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCch
Confidence 58899999999999999999999998887653 5422 112222 2 467999999999764
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00021 Score=55.73 Aligned_cols=59 Identities=20% Similarity=0.179 Sum_probs=45.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH-hCCCCCC----CCH---HHH-HhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS-DMGVPTK----ETP---FEV-AEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~-~~g~~~~----~s~---~e~-~~~adiVi~~vp~~~~ 59 (301)
||..+++.|.+.|++|++++|++++.+.+. ..|.... .+. .++ +.++|+||+|++++..
T Consensus 30 iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~ 97 (155)
T 2g1u_A 30 LGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDST 97 (155)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHHH
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcHH
Confidence 588999999999999999999999988876 5554321 122 222 5679999999997653
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00062 Score=59.34 Aligned_cols=94 Identities=10% Similarity=0.109 Sum_probs=67.6
Q ss_pred CcHH-HHHHHHh-CCCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFR-MASNLMK-AGYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~-lA~~L~~-~G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||.. ++..|.+ .++++. ++||++++.+.+.+. |+...+++++++++.|+|++|+|+... .+++.. .++.
T Consensus 17 ~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h--~~~~~~---al~~-- 89 (308)
T 3uuw_A 17 IAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETH--YEIIKI---LLNL-- 89 (308)
T ss_dssp HHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGH--HHHHHH---HHHT--
T ss_pred HHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhH--HHHHHH---HHHC--
Confidence 4554 6777776 467776 799999999887654 777788999999999999999997654 333321 2321
Q ss_pred CCCCeEEEE-eCCCCHHHHHHHHHHHhh
Q 022170 77 SVRPQLLID-SSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 77 ~~~~~ivid-~st~~p~~~~~~~~~~~~ 103 (301)
+..++++ -.+.+++.++++.+...+
T Consensus 90 --gk~vl~EKP~~~~~~~~~~l~~~a~~ 115 (308)
T 3uuw_A 90 --GVHVYVDKPLASTVSQGEELIELSTK 115 (308)
T ss_dssp --TCEEEECSSSSSSHHHHHHHHHHHHH
T ss_pred --CCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 2245555 357788999999887765
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00011 Score=62.43 Aligned_cols=82 Identities=11% Similarity=0.031 Sum_probs=57.5
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||.+++..|.+.|. +|+++||++++.+.+.+. +.....++.+.+.++|+||.|+|..-. -...... ...+ .
T Consensus 119 ~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~-p~~~~i~-~~~l-----~ 191 (253)
T 3u62_A 119 AARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMK-GEELPVS-DDSL-----K 191 (253)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTT-SCCCSCC-HHHH-----T
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCC-CCCCCCC-HHHh-----C
Confidence 68899999999998 899999999998887654 222345677888999999999985321 0000000 1122 2
Q ss_pred CCeEEEEeCCC
Q 022170 79 RPQLLIDSSTI 89 (301)
Q Consensus 79 ~~~ivid~st~ 89 (301)
++.+++|+...
T Consensus 192 ~~~~V~Divy~ 202 (253)
T 3u62_A 192 NLSLVYDVIYF 202 (253)
T ss_dssp TCSEEEECSSS
T ss_pred cCCEEEEeeCC
Confidence 46799999776
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00034 Score=61.78 Aligned_cols=55 Identities=15% Similarity=0.009 Sum_probs=43.9
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHh--------C--C--CCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD--------M--G--VPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~--------~--g--~~~~~s~~e~~~~adiVi~~vp 55 (301)
||+++|..|+..|| +|.+||+++++++.... . . +..++++++++++||+||+++.
T Consensus 20 vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g 87 (331)
T 1pzg_A 20 IGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG 87 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred HHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccC
Confidence 69999999999999 99999999987765211 1 1 2335788888999999999993
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00011 Score=56.58 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=48.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
||..++++|.+.||+ +|++||.+ .+.+ .|..+..|+.|+.+..|++++++|. .. +.+++.+
T Consensus 28 ~G~~~~~~l~~~G~~--v~~vnp~~~~~~i--~G~~~~~sl~el~~~vDlavi~vp~-~~-~~~v~~~ 89 (140)
T 1iuk_A 28 PAHYVPRYLREQGYR--VLPVNPRFQGEEL--FGEEAVASLLDLKEPVDILDVFRPP-SA-LMDHLPE 89 (140)
T ss_dssp HHHHHHHHHHHTTCE--EEEECGGGTTSEE--TTEECBSSGGGCCSCCSEEEECSCH-HH-HTTTHHH
T ss_pred hHHHHHHHHHHCCCE--EEEeCCCcccCcC--CCEEecCCHHHCCCCCCEEEEEeCH-HH-HHHHHHH
Confidence 578999999999997 78888875 2333 4778888999988889999999995 44 6666643
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00027 Score=62.15 Aligned_cols=57 Identities=21% Similarity=0.187 Sum_probs=43.6
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHHHhC---------CCCC-CCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDM---------GVPT-KETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~---------g~~~-~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||+++|..|+++|+ +|++||+++++++.+... .... .++ .+++++||+||+|+|.+.
T Consensus 11 ~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~ 79 (319)
T 1a5z_A 11 VGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ 79 (319)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred HHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence 79999999999999 999999999887665421 1111 134 456789999999999754
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0018 Score=57.74 Aligned_cols=94 Identities=17% Similarity=0.165 Sum_probs=68.6
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||...+..|.+. +++|. ++|+++++.+...+.|+...+|++++++ +.|+|++|+|+... ...+.. .++.
T Consensus 16 ~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h-~~~~~~----al~a-- 88 (359)
T 3e18_A 16 MGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSH-KELAIS----ALEA-- 88 (359)
T ss_dssp HHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGH-HHHHHH----HHHT--
T ss_pred HHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHH-HHHHHH----HHHC--
Confidence 567788888876 67765 7899999987766678888899999987 78999999997654 333221 2321
Q ss_pred CCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 77 SVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 77 ~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
+..++++. -+.+++.++++.+..++
T Consensus 89 --GkhVl~EKP~a~~~~ea~~l~~~a~~ 114 (359)
T 3e18_A 89 --GKHVVCEKPVTMTSEDLLAIMDVAKR 114 (359)
T ss_dssp --TCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred --CCCEEeeCCCcCCHHHHHHHHHHHHH
Confidence 23466654 36788889888887765
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0007 Score=59.22 Aligned_cols=93 Identities=14% Similarity=0.197 Sum_probs=66.8
Q ss_pred CcHHHHHHHHhC-CCeE-EEEcCChhhHHHHHhCCCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V-~~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||..++..|.+. ++++ .++|+++++.+.+.+. +...++++++++ ++|+|++|+|+... .+++.. .++
T Consensus 21 ~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h--~~~~~~---al~--- 91 (315)
T 3c1a_A 21 WGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATH--AEITLA---AIA--- 91 (315)
T ss_dssp TTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGH--HHHHHH---HHH---
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHH--HHHHHH---HHH---
Confidence 688899999885 5665 5899999988777655 556778999885 79999999997653 333321 232
Q ss_pred CCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 77 SVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 77 ~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
.+..++++. .+.++...+++.+..++
T Consensus 92 -~Gk~v~~eKP~~~~~~~~~~l~~~a~~ 118 (315)
T 3c1a_A 92 -SGKAVLVEKPLTLDLAEAEAVAAAAKA 118 (315)
T ss_dssp -TTCEEEEESSSCSCHHHHHHHHHHHHH
T ss_pred -CCCcEEEcCCCcCCHHHHHHHHHHHHH
Confidence 122466663 56788888888887764
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0012 Score=58.57 Aligned_cols=94 Identities=15% Similarity=0.268 Sum_probs=68.0
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhC-CCC-CCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVP-TKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g~~-~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
||..++..|.+. +++|. ++|+++++.+.+.+. |+. ..++++++++ ++|+|++|+|+... .+++.. .++
T Consensus 13 ~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h--~~~~~~---al~- 86 (344)
T 3ezy_A 13 IGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTH--SELVIA---CAK- 86 (344)
T ss_dssp HHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGH--HHHHHH---HHH-
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcch--HHHHHH---HHh-
Confidence 577888888775 56765 789999998877654 553 6789999988 79999999997654 333321 232
Q ss_pred CCCCCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 75 GNSVRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 75 ~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
.+..++++.. +.++..++++.+...+
T Consensus 87 ---~gk~v~~EKP~~~~~~e~~~l~~~a~~ 113 (344)
T 3ezy_A 87 ---AKKHVFCEKPLSLNLADVDRMIEETKK 113 (344)
T ss_dssp ---TTCEEEEESCSCSCHHHHHHHHHHHHH
T ss_pred ---cCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 1234666654 7889999999887765
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.002 Score=56.67 Aligned_cols=94 Identities=10% Similarity=0.143 Sum_probs=65.6
Q ss_pred CcHHH-HHHHHhCCCeEE-EEcCChhhHHHHHhC-CCC-CCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 1 MGFRM-ASNLMKAGYKMA-VHDVNCNVMKMFSDM-GVP-TKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~l-A~~L~~~G~~V~-~~dr~~~~~~~l~~~-g~~-~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
||..+ +..|.+.|++|. ++|+++++.+.+.+. |+. ..++++++++ ++|+|++|+|+... .+++.. .++
T Consensus 11 ~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h--~~~~~~---al~- 84 (332)
T 2glx_A 11 IAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELH--REQTLA---AIR- 84 (332)
T ss_dssp HHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGH--HHHHHH---HHH-
T ss_pred HHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHh--HHHHHH---HHH-
Confidence 56676 777777778865 789999998877653 663 6789999986 49999999996653 333321 232
Q ss_pred CCCCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 75 GNSVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 75 ~~~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
.+..++++. .+.++.+.+++.+...+
T Consensus 85 ---~Gk~v~~ekP~~~~~~~~~~l~~~a~~ 111 (332)
T 2glx_A 85 ---AGKHVLCEKPLAMTLEDAREMVVAARE 111 (332)
T ss_dssp ---TTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred ---CCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 122466654 46788888888887764
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00055 Score=60.39 Aligned_cols=56 Identities=20% Similarity=0.113 Sum_probs=43.4
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHH----h-------C-CCCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----D-------M-GVPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~----~-------~-g~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
||+++|..|+.+|+ +|.+||+++++++... . . .+..++++ +++++||+||++++.+
T Consensus 25 vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~p 93 (328)
T 2hjr_A 25 IGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGVP 93 (328)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCCC
Confidence 79999999999999 9999999998776421 1 0 13334666 7889999999999544
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0015 Score=57.92 Aligned_cols=94 Identities=13% Similarity=0.163 Sum_probs=67.7
Q ss_pred CcHHHHHHHH-h-CCCeEE-EEcCChhhHHHHHhC-C--CCCCCCHHHHHhc--CCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLM-K-AGYKMA-VHDVNCNVMKMFSDM-G--VPTKETPFEVAEA--SDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~-~-~G~~V~-~~dr~~~~~~~l~~~-g--~~~~~s~~e~~~~--adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||..++..|. + .+++|. ++||++++.+.+.+. | ....+++++++++ .|+|++|+|+... ...+.. .+
T Consensus 13 ~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h-~~~~~~----al 87 (344)
T 3mz0_A 13 IGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAH-ESSVLK----AI 87 (344)
T ss_dssp HHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGH-HHHHHH----HH
T ss_pred HHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhH-HHHHHH----HH
Confidence 5788888888 4 467765 789999998887654 6 5678899999876 9999999997654 333321 23
Q ss_pred cCCCCCCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 73 QGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 73 ~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
+. +..++++.- +.+++.++++.+...+
T Consensus 88 ~~----Gk~vl~EKP~a~~~~e~~~l~~~a~~ 115 (344)
T 3mz0_A 88 KA----QKYVFCEKPLATTAEGCMRIVEEEIK 115 (344)
T ss_dssp HT----TCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred HC----CCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 21 234666554 6788899998887764
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0027 Score=55.52 Aligned_cols=94 Identities=13% Similarity=0.200 Sum_probs=65.3
Q ss_pred CcHH-HHHHHHh-CCCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFR-MASNLMK-AGYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~-lA~~L~~-~G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||.. ++..|.+ .+++|. ++|+++++.+.+.+. |+...++.+++..++|+|++|+|+... .+++.. .++
T Consensus 16 ~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h--~~~~~~---al~--- 87 (319)
T 1tlt_A 16 IAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASH--FDVVST---LLN--- 87 (319)
T ss_dssp HHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHH--HHHHHH---HHH---
T ss_pred HHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhH--HHHHHH---HHH---
Confidence 4564 6777776 367766 899999998877654 777777888776689999999997653 333321 232
Q ss_pred CCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 77 SVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 77 ~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
.+..++++. .+.+++..+++.+..++
T Consensus 88 -~G~~v~~eKP~~~~~~~~~~l~~~a~~ 114 (319)
T 1tlt_A 88 -AGVHVCVDKPLAENLRDAERLVELAAR 114 (319)
T ss_dssp -TTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred -cCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 122466764 46788888888887764
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0031 Score=55.68 Aligned_cols=94 Identities=17% Similarity=0.276 Sum_probs=65.4
Q ss_pred CcHHHHHHHH-h-CCCeE-EEEcCChhhHHHHHhC-CC-CCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCcccc
Q 022170 1 MGFRMASNLM-K-AGYKM-AVHDVNCNVMKMFSDM-GV-PTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQ 73 (301)
Q Consensus 1 mG~~lA~~L~-~-~G~~V-~~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~ 73 (301)
||..++..|. + .|++| .++|+++++.+.+.+. |+ ...++++++++ ++|+|++|+|+... .+++.. .++
T Consensus 19 ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h--~~~~~~---al~ 93 (346)
T 3cea_A 19 LGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFH--PEMTIY---AMN 93 (346)
T ss_dssp THHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGH--HHHHHH---HHH
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhH--HHHHHH---HHH
Confidence 6888899888 5 46775 5789999999887665 66 46789999886 69999999997654 333321 232
Q ss_pred CCCCCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 74 GGNSVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 74 ~~~~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
.+..++++. .+.++...+++.+...+
T Consensus 94 ----~G~~v~~eKp~~~~~~~~~~l~~~a~~ 120 (346)
T 3cea_A 94 ----AGLNVFCEKPLGLDFNEVDEMAKVIKS 120 (346)
T ss_dssp ----TTCEEEECSCCCSCHHHHHHHHHHHHT
T ss_pred ----CCCEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 122355553 45678888888777653
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00081 Score=60.48 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=56.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-CCCCC------CCCHHHHHhcCCEEEEecCCCc-cchhhhhcCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT------KETPFEVAEASDVVITMLPSSS-HQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-~g~~~------~~s~~e~~~~adiVi~~vp~~~-~~~~~v~~~~~~~l 72 (301)
||..+++.+...|.+|++|||++++.+.+.+ .|... ..++.+.+.++|+||.|++.+. . ...++. ...+
T Consensus 179 iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~~-t~~li~--~~~l 255 (377)
T 2vhw_A 179 AGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAK-APKLVS--NSLV 255 (377)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTSC-CCCCBC--HHHH
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCCC-Ccceec--HHHH
Confidence 5889999999999999999999999887766 45542 2356677889999999986443 1 222211 1122
Q ss_pred cCCCCCCCeEEEEeC
Q 022170 73 QGGNSVRPQLLIDSS 87 (301)
Q Consensus 73 ~~~~~~~~~ivid~s 87 (301)
+. ..++.++||++
T Consensus 256 ~~--mk~g~~iV~va 268 (377)
T 2vhw_A 256 AH--MKPGAVLVDIA 268 (377)
T ss_dssp TT--SCTTCEEEEGG
T ss_pred hc--CCCCcEEEEEe
Confidence 22 23567899987
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0016 Score=57.92 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=68.0
Q ss_pred CcH-HHHHHHHhC-CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 1 MGF-RMASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~-~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
||. .++..|.+. +++|. ++||++++.+.+.+. |+...++++++++ +.|+|++|+|+... ...+.. .++
T Consensus 38 ~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h-~~~~~~----al~- 111 (350)
T 3rc1_A 38 IAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLH-AEWIDR----ALR- 111 (350)
T ss_dssp HHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGH-HHHHHH----HHH-
T ss_pred HHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHH-HHHHHH----HHH-
Confidence 455 577888877 67765 789999998887654 7777789999986 58999999997764 333321 232
Q ss_pred CCCCCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 75 GNSVRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 75 ~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
.+..++++.- +.++++++++.+..++
T Consensus 112 ---aGk~Vl~EKP~a~~~~ea~~l~~~a~~ 138 (350)
T 3rc1_A 112 ---AGKHVLAEKPLTTDRPQAERLFAVARE 138 (350)
T ss_dssp ---TTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred ---CCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1234666654 7788999999887765
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0036 Score=55.17 Aligned_cols=91 Identities=12% Similarity=0.218 Sum_probs=65.7
Q ss_pred HHHHHHHhCCCeE-EEEcCChhhHHHHHhC--CCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 4 RMASNLMKAGYKM-AVHDVNCNVMKMFSDM--GVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 4 ~lA~~L~~~G~~V-~~~dr~~~~~~~l~~~--g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
.++..|...|++| .++|+++++.+.+.+. +....+|++++++ +.|+|++|+|+... ...+.. .++ .
T Consensus 19 ~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h-~~~~~~----al~----a 89 (336)
T 2p2s_A 19 DMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDR-AELALR----TLD----A 89 (336)
T ss_dssp HHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGH-HHHHHH----HHH----T
T ss_pred HhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhH-HHHHHH----HHH----C
Confidence 4666776678886 5889999998887764 5677899999986 68999999997764 333332 232 1
Q ss_pred CCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 79 RPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 79 ~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
+..++++. .+.++.+++++.+..++
T Consensus 90 GkhVl~EKP~a~~~~e~~~l~~~a~~ 115 (336)
T 2p2s_A 90 GKDFFTAKPPLTTLEQLDAVQRRVAE 115 (336)
T ss_dssp TCEEEECSSCCSCHHHHHHHHHHHHH
T ss_pred CCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22466665 56788888888887764
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00025 Score=61.18 Aligned_cols=88 Identities=8% Similarity=-0.040 Sum_probs=56.6
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCC----CCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGV----PTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~----~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||.+++..|.+.|. +|++|+|++++.+++.+.-. ....+++++..++|+||.|+|.... ....... ...+
T Consensus 137 ~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~-~~~~~l~-~~~l--- 211 (281)
T 3o8q_A 137 AARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLD-GELPAID-PVIF--- 211 (281)
T ss_dssp HHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC-----CSCC-GGGE---
T ss_pred HHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCC-CCCCCCC-HHHh---
Confidence 57899999999996 99999999999887765311 1122444544789999999996542 2111111 1122
Q ss_pred CCCCCeEEEEeCCCCHHHHHH
Q 022170 76 NSVRPQLLIDSSTIDPQTSRN 96 (301)
Q Consensus 76 ~~~~~~ivid~st~~p~~~~~ 96 (301)
.++.+++|+... |..+..
T Consensus 212 --~~~~~V~DlvY~-P~~T~l 229 (281)
T 3o8q_A 212 --SSRSVCYDMMYG-KGYTVF 229 (281)
T ss_dssp --EEEEEEEESCCC-SSCCHH
T ss_pred --CcCCEEEEecCC-CccCHH
Confidence 246799999876 433333
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0027 Score=57.75 Aligned_cols=80 Identities=19% Similarity=0.166 Sum_probs=59.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccch-hhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQV-LDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~-~~v~~~~~~~l~~~~~~~ 79 (301)
+|..+|+.+...|.+|+++|+++.+.......|... .+++++++.+|+|+++.++..- + .+.+ +. +++
T Consensus 258 IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~v-v~LeElL~~ADIVv~atgt~~l-I~~e~l-------~~--MK~ 326 (464)
T 3n58_A 258 VGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEV-VTLDDAASTADIVVTTTGNKDV-ITIDHM-------RK--MKD 326 (464)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECCSSSSS-BCHHHH-------HH--SCT
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCcee-ccHHHHHhhCCEEEECCCCccc-cCHHHH-------hc--CCC
Confidence 488999999999999999999998766555667654 4799999999999998765432 2 2222 21 356
Q ss_pred CeEEEEeCCCCH
Q 022170 80 PQLLIDSSTIDP 91 (301)
Q Consensus 80 ~~ivid~st~~p 91 (301)
+.++|+++-...
T Consensus 327 GAILINvGRgdv 338 (464)
T 3n58_A 327 MCIVGNIGHFDN 338 (464)
T ss_dssp TEEEEECSSSTT
T ss_pred CeEEEEcCCCCc
Confidence 789999886543
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0024 Score=57.84 Aligned_cols=80 Identities=15% Similarity=0.087 Sum_probs=58.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchh-hhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVL-DVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~-~v~~~~~~~l~~~~~~~ 79 (301)
+|..+|+.|...|.+|+++|+++.+.......|... .++++++..+|+|++|..+... +. +.+ .. ..+
T Consensus 231 IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~atgt~~l-I~~e~l-------~~--MK~ 299 (435)
T 3gvp_A 231 VGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRL-VKLNEVIRQVDIVITCTGNKNV-VTREHL-------DR--MKN 299 (435)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSCS-BCHHHH-------HH--SCT
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEECCCCccc-CCHHHH-------Hh--cCC
Confidence 588999999999999999999998776666667543 5799999999999998432221 22 222 21 346
Q ss_pred CeEEEEeCCCCH
Q 022170 80 PQLLIDSSTIDP 91 (301)
Q Consensus 80 ~~ivid~st~~p 91 (301)
+.++|+++...+
T Consensus 300 gailINvgrg~~ 311 (435)
T 3gvp_A 300 SCIVCNMGHSNT 311 (435)
T ss_dssp TEEEEECSSTTT
T ss_pred CcEEEEecCCCc
Confidence 789999986654
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0014 Score=57.95 Aligned_cols=95 Identities=18% Similarity=0.137 Sum_probs=69.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|..+|+.+..-|.+|.+||+.+.. ...+.+.. ..++++++++||+|.+++|-... .+.++.. ..++. ++++
T Consensus 152 IG~~va~~~~~fg~~v~~~d~~~~~--~~~~~~~~-~~~l~ell~~sDivslh~Plt~~-T~~li~~--~~l~~--mk~~ 223 (334)
T 3kb6_A 152 IGSRVAMYGLAFGMKVLCYDVVKRE--DLKEKGCV-YTSLDELLKESDVISLHVPYTKE-THHMINE--ERISL--MKDG 223 (334)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCH--HHHHTTCE-ECCHHHHHHHCSEEEECCCCCTT-TTTCBCH--HHHHH--SCTT
T ss_pred HHHHHHHhhcccCceeeecCCccch--hhhhcCce-ecCHHHHHhhCCEEEEcCCCChh-hccCcCH--HHHhh--cCCC
Confidence 4789999999999999999987653 33444554 46899999999999999997665 6666543 23433 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-.-..+.+.+.+
T Consensus 224 a~lIN~aRG~iVde~aL~~aL~~ 246 (334)
T 3kb6_A 224 VYLINTARGKVVDTDALYRAYQR 246 (334)
T ss_dssp EEEEECSCGGGBCHHHHHHHHHT
T ss_pred eEEEecCccccccHHHHHHHHHh
Confidence 99999986544444566666654
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0011 Score=57.86 Aligned_cols=56 Identities=18% Similarity=0.112 Sum_probs=43.4
Q ss_pred CcHHHHHHHHhC--CCeEEEEcCChhhHHHHHh---C-------C--CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKA--GYKMAVHDVNCNVMKMFSD---M-------G--VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~--G~~V~~~dr~~~~~~~l~~---~-------g--~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
||+++|..|+++ ||+|++||+++++++.+.. . . +..++++++ +++||+||+|+|.+
T Consensus 11 vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~p 80 (310)
T 1guz_A 11 VGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGLP 80 (310)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCCC
Confidence 689999999985 7999999999988765431 1 1 233456766 89999999999865
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00054 Score=52.88 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=46.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
||..++++|.+.||+ +|++||+. +.+ .|..+..|+.++....|++++++|.+ . +.+++.+
T Consensus 37 ~G~~~~~~l~~~G~~--v~~Vnp~~-~~i--~G~~~y~sl~~l~~~vDlvvi~vp~~-~-~~~vv~~ 96 (144)
T 2d59_A 37 DANIVMKYLLEHGYD--VYPVNPKY-EEV--LGRKCYPSVLDIPDKIEVVDLFVKPK-L-TMEYVEQ 96 (144)
T ss_dssp HHHHHHHHHHHTTCE--EEEECTTC-SEE--TTEECBSSGGGCSSCCSEEEECSCHH-H-HHHHHHH
T ss_pred hHHHHHHHHHHCCCE--EEEECCCC-CeE--CCeeccCCHHHcCCCCCEEEEEeCHH-H-HHHHHHH
Confidence 478899999999997 56666664 223 47788889999888899999999964 4 6777643
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0035 Score=55.77 Aligned_cols=94 Identities=13% Similarity=0.174 Sum_probs=67.8
Q ss_pred CcHHHHHHHH-h-CCCeEE-EEcCChhhHHHHHhC-C--CCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLM-K-AGYKMA-VHDVNCNVMKMFSDM-G--VPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~-~-~G~~V~-~~dr~~~~~~~l~~~-g--~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||..++..|. + .+++|. ++|+++++.+.+.+. | ....++++++++ +.|+|++|+|+... ...+.. .+
T Consensus 34 ~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h-~~~~~~----al 108 (357)
T 3ec7_A 34 IGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAH-ADVAVA----AL 108 (357)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGH-HHHHHH----HH
T ss_pred HHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHH-HHHHHH----HH
Confidence 5778888888 4 367765 789999998887654 5 567889999987 48999999997664 333321 23
Q ss_pred cCCCCCCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 73 QGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 73 ~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
+ .+..++++.- +.+++.++++.+...+
T Consensus 109 ~----aGk~Vl~EKPla~~~~e~~~l~~~a~~ 136 (357)
T 3ec7_A 109 N----ANKYVFCEKPLAVTAADCQRVIEAEQK 136 (357)
T ss_dssp H----TTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred H----CCCCEEeecCccCCHHHHHHHHHHHHH
Confidence 2 1234666654 6788899999887765
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0028 Score=57.37 Aligned_cols=82 Identities=15% Similarity=0.219 Sum_probs=56.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCC---------------------------CHHHHHhcCCEEEEe
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE---------------------------TPFEVAEASDVVITM 53 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~---------------------------s~~e~~~~adiVi~~ 53 (301)
+|...++.+...|.+|+++|+++++.+.+.+.|+.... ++.+.+..+|+||.|
T Consensus 183 iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDvVI~~ 262 (401)
T 1x13_A 183 AGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTT 262 (401)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 47888999999999999999999998888777765432 256777889999999
Q ss_pred --cCCCccchhhhhcCCCccccCCCCCCCeEEEEeCC
Q 022170 54 --LPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 88 (301)
Q Consensus 54 --vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 88 (301)
+|... ...++. ...++. ..++.++||++.
T Consensus 263 ~~~pg~~--ap~li~--~~~l~~--mk~g~vIVdva~ 293 (401)
T 1x13_A 263 ALIPGKP--APKLIT--REMVDS--MKAGSVIVDLAA 293 (401)
T ss_dssp CCCTTSC--CCCCBC--HHHHHT--SCTTCEEEETTG
T ss_pred CccCCCC--CCeeeC--HHHHhc--CCCCcEEEEEcC
Confidence 44211 111111 012222 235679999884
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0006 Score=51.84 Aligned_cols=57 Identities=12% Similarity=0.211 Sum_probs=41.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC----CCHH---HH-HhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETPF---EV-AEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s~~---e~-~~~adiVi~~vp~~ 57 (301)
||..++..|.+.|++|+++|+++++.+.+.+.+.... .+.+ ++ ..++|+|+.|++++
T Consensus 17 iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 17 FGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp HHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence 5889999999999999999999998877765543211 1222 22 45688888888865
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0049 Score=52.46 Aligned_cols=62 Identities=13% Similarity=0.246 Sum_probs=47.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|.++|..|.+.|..|++++++ +.++++.+++||+||.+++.+.- +.. .++ .+|
T Consensus 162 VG~plA~lL~~~gAtVtv~~~~--------------t~~L~~~~~~ADIVI~Avg~p~~-I~~------~~v-----k~G 215 (276)
T 3ngx_A 162 VGRPLSMMLLNRNYTVSVCHSK--------------TKDIGSMTRSSKIVVVAVGRPGF-LNR------EMV-----TPG 215 (276)
T ss_dssp THHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHHHSSEEEECSSCTTC-BCG------GGC-----CTT
T ss_pred HHHHHHHHHHHCCCeEEEEeCC--------------cccHHHhhccCCEEEECCCCCcc-ccH------hhc-----cCC
Confidence 5889999999999999998763 36788999999999999995432 221 233 357
Q ss_pred eEEEEeCC
Q 022170 81 QLLIDSST 88 (301)
Q Consensus 81 ~ivid~st 88 (301)
.++||++.
T Consensus 216 avVIDvgi 223 (276)
T 3ngx_A 216 SVVIDVGI 223 (276)
T ss_dssp CEEEECCC
T ss_pred cEEEEecc
Confidence 89999875
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.003 Score=55.34 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=62.6
Q ss_pred CcH-HHHHHHHhC-CCeEEEEcCChhhHHHHHhC-CCCC-CCCHHHHH-hcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGF-RMASNLMKA-GYKMAVHDVNCNVMKMFSDM-GVPT-KETPFEVA-EASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~-~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~-g~~~-~~s~~e~~-~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||. .++..|.+. +++|.++|+++++.+.+.+. |+.. ..+..+.+ .++|+|++|+|+... .+++.. .++.
T Consensus 13 ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h--~~~~~~---al~~- 86 (323)
T 1xea_A 13 IAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVH--STLAAF---FLHL- 86 (323)
T ss_dssp HHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGH--HHHHHH---HHHT-
T ss_pred HHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhH--HHHHHH---HHHC-
Confidence 465 477777764 67877999999999877653 6553 44445555 679999999996653 344321 2321
Q ss_pred CCCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 76 NSVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 76 ~~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
+..++++. .+.++...+++.+..++
T Consensus 87 ---Gk~V~~EKP~~~~~~~~~~l~~~a~~ 112 (323)
T 1xea_A 87 ---GIPTFVDKPLAASAQECENLYELAEK 112 (323)
T ss_dssp ---TCCEEEESCSCSSHHHHHHHHHHHHH
T ss_pred ---CCeEEEeCCCcCCHHHHHHHHHHHHh
Confidence 22366664 46788888888887764
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0011 Score=54.67 Aligned_cols=58 Identities=12% Similarity=0.312 Sum_probs=44.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-CCCCC----CC---CHHHH-HhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT----KE---TPFEV-AEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-~g~~~----~~---s~~e~-~~~adiVi~~vp~~~ 58 (301)
||..+|..|.+.||+|+++|+++++++.+.+ .|... .. .+.++ +.++|+|+++++++.
T Consensus 11 ~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~ 77 (218)
T 3l4b_C 11 TAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDE 77 (218)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHH
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcH
Confidence 5889999999999999999999999988764 34321 11 23343 568999999999765
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0014 Score=57.18 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=39.7
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHHHh---CC------CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSD---MG------VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~---~g------~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
||+++|..|+.+|+ +|.+||+++++.+.... .+ .+...+..+++++||+||++++.+
T Consensus 11 vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~~ 78 (304)
T 2v6b_A 11 VGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGAN 78 (304)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC---
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 68999999999999 99999999986653221 11 112112246788999999999654
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0021 Score=57.52 Aligned_cols=83 Identities=14% Similarity=0.235 Sum_probs=54.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-CCCCC------CCCHHHHHhcCCEEEEecCCCc-cchhhhhcCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT------KETPFEVAEASDVVITMLPSSS-HQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-~g~~~------~~s~~e~~~~adiVi~~vp~~~-~~~~~v~~~~~~~l 72 (301)
+|..+++.+...|++|+++||++++.+.+.+ .|... ..++.+.+.++|+||.|++.+. . ...++. ...+
T Consensus 177 iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~-~~~li~--~~~l 253 (369)
T 2eez_A 177 VGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAK-APKLVT--RDML 253 (369)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC--------CCSC--HHHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccc-cchhHH--HHHH
Confidence 5889999999999999999999998877765 45432 2355677889999999998553 1 111111 1122
Q ss_pred cCCCCCCCeEEEEeCC
Q 022170 73 QGGNSVRPQLLIDSST 88 (301)
Q Consensus 73 ~~~~~~~~~ivid~st 88 (301)
+. ..++.++||.+.
T Consensus 254 ~~--mk~gg~iV~v~~ 267 (369)
T 2eez_A 254 SL--MKEGAVIVDVAV 267 (369)
T ss_dssp TT--SCTTCEEEECC-
T ss_pred Hh--hcCCCEEEEEec
Confidence 22 234568998884
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0041 Score=55.42 Aligned_cols=93 Identities=9% Similarity=0.135 Sum_probs=65.0
Q ss_pred cH-HHHHHHHhC-CCeEE-EEcCChhhHHHHHhC--CCCCCCCHHHHHhc--CCEEEEecCCCccchhhhhcCCCccccC
Q 022170 2 GF-RMASNLMKA-GYKMA-VHDVNCNVMKMFSDM--GVPTKETPFEVAEA--SDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 2 G~-~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~--g~~~~~s~~e~~~~--adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
|. .++..|.+. +++|. ++||++++++.+.+. +...++++++++++ .|+|++|+|+... . +++.. .++
T Consensus 17 g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H-~-~~~~~---al~- 90 (359)
T 3m2t_A 17 MQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLH-F-EMGLL---AMS- 90 (359)
T ss_dssp HHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHH-H-HHHHH---HHH-
T ss_pred HHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHH-H-HHHHH---HHH-
Confidence 44 367777765 67765 889999999988876 56778899999875 4999999997654 3 33221 232
Q ss_pred CCCCCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 75 GNSVRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 75 ~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
.+..++++.- +.++..++++.+..++
T Consensus 91 ---aGkhVl~EKPla~~~~e~~~l~~~a~~ 117 (359)
T 3m2t_A 91 ---KGVNVFVEKPPCATLEELETLIDAARR 117 (359)
T ss_dssp ---TTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred ---CCCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 1224666543 6788888888887765
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0029 Score=54.15 Aligned_cols=83 Identities=11% Similarity=0.051 Sum_probs=54.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CC--CC-CCCHHHHH-hcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GV--PT-KETPFEVA-EASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~--~~-~~s~~e~~-~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||.+++..|++.|++|++|||++++.+.+.+. +. .. ..+.+++. ..+|+||.|+|.+. ..++..-...++
T Consensus 130 ~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~--~~~~~~i~~~~l--- 204 (271)
T 1nyt_A 130 ASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGI--SGDIPAIPSSLI--- 204 (271)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGG--GTCCCCCCGGGC---
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCC--CCCCCCCCHHHc---
Confidence 58899999999999999999999988777643 21 11 12233332 48999999999543 222210001122
Q ss_pred CCCCCeEEEEeCCCC
Q 022170 76 NSVRPQLLIDSSTID 90 (301)
Q Consensus 76 ~~~~~~ivid~st~~ 90 (301)
.++.+++|++...
T Consensus 205 --~~~~~v~D~~y~p 217 (271)
T 1nyt_A 205 --HPGIYCYDMFYQK 217 (271)
T ss_dssp --CTTCEEEESCCCS
T ss_pred --CCCCEEEEeccCC
Confidence 3567999998863
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.007 Score=53.14 Aligned_cols=94 Identities=15% Similarity=0.224 Sum_probs=64.9
Q ss_pred CcHHHHHHHHhCC-CeEE-EEcCChhhHHHHHhC-CCC-CCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 1 MGFRMASNLMKAG-YKMA-VHDVNCNVMKMFSDM-GVP-TKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~-~~dr~~~~~~~l~~~-g~~-~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
||..++..|.+.+ ++|. ++||++++.+.+.+. |+. .+++++++++ +.|+|++|+|+... .+++.. .++
T Consensus 16 ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h--~~~~~~---al~- 89 (329)
T 3evn_A 16 VAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDH--YKVAKA---ALL- 89 (329)
T ss_dssp THHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGH--HHHHHH---HHH-
T ss_pred HHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHH--HHHHHH---HHH-
Confidence 6788888887754 5554 789999998877665 654 6789999997 79999999997654 333321 232
Q ss_pred CCCCCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 75 GNSVRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 75 ~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
.+..++++.- +.+++.++++.+..++
T Consensus 90 ---aGk~Vl~EKP~a~~~~e~~~l~~~a~~ 116 (329)
T 3evn_A 90 ---AGKHVLVEKPFTLTYDQANELFALAES 116 (329)
T ss_dssp ---TTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred ---CCCeEEEccCCcCCHHHHHHHHHHHHH
Confidence 1234666654 6788889898887765
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00096 Score=56.99 Aligned_cols=93 Identities=16% Similarity=0.073 Sum_probs=58.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+++..|.+.|.+|++|||++++.+.+.+.++... +++++ .++|+||.|+|.... -...+ ..+.+.+. ..++
T Consensus 129 aaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~-~~~~l-~~~DiVInaTp~Gm~-~~~~l-~~~~l~~~--l~~~ 202 (269)
T 3phh_A 129 SAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF-MEPPK-SAFDLIINATSASLH-NELPL-NKEVLKGY--FKEG 202 (269)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE-SSCCS-SCCSEEEECCTTCCC-CSCSS-CHHHHHHH--HHHC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe-cHHHh-ccCCEEEEcccCCCC-CCCCC-ChHHHHhh--CCCC
Confidence 5789999999999999999999999988875454332 23332 389999999996532 11111 00100000 1245
Q ss_pred eEEEEeCCCCHHHHHHHHHHHh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~ 102 (301)
.+++|+... | .+. +.+..+
T Consensus 203 ~~v~D~vY~-P-~T~-ll~~A~ 221 (269)
T 3phh_A 203 KLAYDLAYG-F-LTP-FLSLAK 221 (269)
T ss_dssp SEEEESCCS-S-CCH-HHHHHH
T ss_pred CEEEEeCCC-C-chH-HHHHHH
Confidence 799999876 4 443 444444
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0068 Score=52.25 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=46.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHH--HHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPF--EVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~--e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
+|.++|..|.+.|..|++++|... +++ +.+++||+||.+++.+.- +.. .++ .
T Consensus 177 VG~p~A~lL~~~gAtVtv~~~~T~--------------~l~l~~~~~~ADIVI~Avg~p~~-I~~------~~v-----k 230 (300)
T 4a26_A 177 VGAPVAALLMKENATVTIVHSGTS--------------TEDMIDYLRTADIVIAAMGQPGY-VKG------EWI-----K 230 (300)
T ss_dssp THHHHHHHHHHTTCEEEEECTTSC--------------HHHHHHHHHTCSEEEECSCCTTC-BCG------GGS-----C
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCC--------------CchhhhhhccCCEEEECCCCCCC-CcH------Hhc-----C
Confidence 588999999999999999987322 345 889999999999995532 221 233 3
Q ss_pred CCeEEEEeCC
Q 022170 79 RPQLLIDSST 88 (301)
Q Consensus 79 ~~~ivid~st 88 (301)
+|.+|||++.
T Consensus 231 ~GavVIDvgi 240 (300)
T 4a26_A 231 EGAAVVDVGT 240 (300)
T ss_dssp TTCEEEECCC
T ss_pred CCcEEEEEec
Confidence 6789999875
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0087 Score=53.83 Aligned_cols=84 Identities=12% Similarity=0.153 Sum_probs=55.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC--CC---------------------------HHHHHhcCCEEE
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ET---------------------------PFEVAEASDVVI 51 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s---------------------------~~e~~~~adiVi 51 (301)
+|...++.+...|.+|++|||++++.+.+.+.|+... .+ +.+.+..+|+||
T Consensus 183 iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi 262 (384)
T 1l7d_A 183 AGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAI 262 (384)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEE
Confidence 4788888898999999999999998888877776543 11 567778999999
Q ss_pred EecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCC
Q 022170 52 TMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 88 (301)
Q Consensus 52 ~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 88 (301)
.|++.+......++. ...++. ..++.++||++.
T Consensus 263 ~~~~~pg~~~~~li~--~~~l~~--mk~g~vivdva~ 295 (384)
T 1l7d_A 263 TTALIPGKPAPVLIT--EEMVTK--MKPGSVIIDLAV 295 (384)
T ss_dssp ECCCCTTSCCCCCSC--HHHHTT--SCTTCEEEETTG
T ss_pred ECCccCCCCCCeeeC--HHHHhc--CCCCCEEEEEec
Confidence 999432100111111 011222 235678999873
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=96.36 E-value=0.011 Score=52.07 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=65.3
Q ss_pred CcHHHHHHHHhCC---Ce-EEEEcCChhhHHHHHhC-CC-CCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLMKAG---YK-MAVHDVNCNVMKMFSDM-GV-PTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~~G---~~-V~~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||..++..|.+.+ ++ |.++||++++.+.+.+. |+ ...+|++++++ +.|+|++|+|+... ...+.. .+
T Consensus 13 ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H-~~~~~~----al 87 (334)
T 3ohs_X 13 ISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQH-KAAVML----CL 87 (334)
T ss_dssp HHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGH-HHHHHH----HH
T ss_pred HHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHH-HHHHHH----HH
Confidence 4667777777654 34 45789999998887654 66 46889999987 69999999997754 333221 23
Q ss_pred cCCCCCCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 73 QGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 73 ~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
+. +..++++-- +.++.+++++.+..++
T Consensus 88 ~~----GkhVl~EKP~a~~~~e~~~l~~~a~~ 115 (334)
T 3ohs_X 88 AA----GKAVLCEKPMGVNAAEVREMVTEARS 115 (334)
T ss_dssp HT----TCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred hc----CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 21 234666653 6788889998887764
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0064 Score=56.38 Aligned_cols=94 Identities=9% Similarity=0.075 Sum_probs=66.8
Q ss_pred CcHHHHHHHHhC--CCeEE-EEcCChhhHHHHHhC-CCC---CCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCcc
Q 022170 1 MGFRMASNLMKA--GYKMA-VHDVNCNVMKMFSDM-GVP---TKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGL 71 (301)
Q Consensus 1 mG~~lA~~L~~~--G~~V~-~~dr~~~~~~~l~~~-g~~---~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~ 71 (301)
||..++..|.+. +++|. ++|+++++.+.+.+. |+. .+++++++++ +.|+|++|+|+... ...+.. .
T Consensus 54 ~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~~~H-~~~~~~----a 128 (479)
T 2nvw_A 54 VAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVPEH-YEVVKN----I 128 (479)
T ss_dssp HHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHHHH-HHHHHH----H
T ss_pred HHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCcHHH-HHHHHH----H
Confidence 456678888875 67764 789999998877654 664 6789999986 68999999997654 333322 2
Q ss_pred ccCCCCCC------CeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 72 LQGGNSVR------PQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 72 l~~~~~~~------~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
++. + ..++++. -+.++.+++++.+...+
T Consensus 129 l~a----G~~~~~~khVl~EKPla~~~~ea~~l~~~a~~ 163 (479)
T 2nvw_A 129 LEH----SSQNLNLRYLYVEWALAASVQQAEELYSISQQ 163 (479)
T ss_dssp HHH----SSSCSSCCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HHC----CCCcCCceeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 221 1 3477776 46788888998887764
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0022 Score=56.10 Aligned_cols=56 Identities=14% Similarity=0.300 Sum_probs=40.9
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHH--HHH-hCCC------CC--CCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMK--MFS-DMGV------PT--KETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~--~l~-~~g~------~~--~~s~~e~~~~adiVi~~vp~~ 57 (301)
||+++|..|+++|| +|++|||++++.+ .+. ..+. .. ..+ .++++++|+||++++.+
T Consensus 18 vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~aD~Vii~v~~~ 86 (319)
T 1lld_A 18 VGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAGPR 86 (319)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC-HHHhCCCCEEEECCCCC
Confidence 68999999999999 9999999987765 221 2222 11 123 35678999999999754
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0081 Score=54.02 Aligned_cols=93 Identities=19% Similarity=0.260 Sum_probs=64.7
Q ss_pred cHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHHhc--CCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 2 GFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEA--SDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 2 G~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~--adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
|..++..|.+. +++|. ++|+++++.+.+.+. |+..++|+++++++ .|+|++|+|+... ...+.. .++.
T Consensus 15 ~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H-~~~~~~----al~a-- 87 (387)
T 3moi_A 15 SVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFH-CEHVVQ----ASEQ-- 87 (387)
T ss_dssp HTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGH-HHHHHH----HHHT--
T ss_pred HHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHH-HHHHHH----HHHC--
Confidence 45567777765 55655 789999998877654 88888999999874 9999999997654 332221 2321
Q ss_pred CCCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 77 SVRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 77 ~~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
+..++++.- +.+++..+++.+..++
T Consensus 88 --Gk~Vl~EKP~a~~~~e~~~l~~~a~~ 113 (387)
T 3moi_A 88 --GLHIIVEKPLTLSRDEADRMIEAVER 113 (387)
T ss_dssp --TCEEEECSCCCSCHHHHHHHHHHHHH
T ss_pred --CCceeeeCCccCCHHHHHHHHHHHHH
Confidence 224565543 6678888888887765
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0079 Score=55.08 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=67.4
Q ss_pred CcHHHHHHHHhC--CCeE-EEEcCChhhHHHHHhC-CCC---CCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCcc
Q 022170 1 MGFRMASNLMKA--GYKM-AVHDVNCNVMKMFSDM-GVP---TKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGL 71 (301)
Q Consensus 1 mG~~lA~~L~~~--G~~V-~~~dr~~~~~~~l~~~-g~~---~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~ 71 (301)
||..++..|.+. +++| .++|+++++.+.+.+. |+. .+++++++++ +.|+|++|+|+... ...+.. .
T Consensus 35 ~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H-~~~~~~----a 109 (438)
T 3btv_A 35 AIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQVASH-YEVVMP----L 109 (438)
T ss_dssp TTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCHHHH-HHHHHH----H
T ss_pred HHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCcHHH-HHHHHH----H
Confidence 567788888886 6775 5889999998877654 654 6789999986 58999999997654 333322 2
Q ss_pred ccCC--CCCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 72 LQGG--NSVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 72 l~~~--~~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
++.. ......++++. -+.++++++++.+..++
T Consensus 110 l~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~ 144 (438)
T 3btv_A 110 LEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAE 144 (438)
T ss_dssp HHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHT
T ss_pred HHCCCCcccceeEEecCcccCCHHHHHHHHHHHHH
Confidence 2210 00003577774 46788888998887764
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.017 Score=51.27 Aligned_cols=94 Identities=14% Similarity=0.165 Sum_probs=65.2
Q ss_pred CcHHHHHHHHhC-CCeE-EEEcCChhhHHHHHhC-C----CCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCcc
Q 022170 1 MGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSDM-G----VPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGL 71 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V-~~~dr~~~~~~~l~~~-g----~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~ 71 (301)
||..++..|.+. ++++ .++|+++++.+.+.+. | ....++++++++ +.|+|++|+|+... .+++.. .
T Consensus 17 ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h--~~~~~~---a 91 (362)
T 1ydw_A 17 IARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLH--VEWAIK---A 91 (362)
T ss_dssp THHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGH--HHHHHH---H
T ss_pred HHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHH--HHHHHH---H
Confidence 678888888875 5665 5789999998877653 5 345679999986 59999999997653 333321 2
Q ss_pred ccCCCCCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 72 LQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 72 l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
++ .+..++++. -+.+....+++.+..++
T Consensus 92 l~----aGk~V~~EKP~a~~~~e~~~l~~~a~~ 120 (362)
T 1ydw_A 92 AE----KGKHILLEKPVAMNVTEFDKIVDACEA 120 (362)
T ss_dssp HT----TTCEEEECSSCSSSHHHHHHHHHHHHT
T ss_pred HH----CCCeEEEecCCcCCHHHHHHHHHHHHH
Confidence 32 122455554 36788888888887765
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.018 Score=52.36 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=64.6
Q ss_pred cHHHHHHHHhCC-CeEE--EEcCChhhHHHHHhC-CC---CCCCCHHHHHhc-------CCEEEEecCCCccchhhhhcC
Q 022170 2 GFRMASNLMKAG-YKMA--VHDVNCNVMKMFSDM-GV---PTKETPFEVAEA-------SDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 2 G~~lA~~L~~~G-~~V~--~~dr~~~~~~~l~~~-g~---~~~~s~~e~~~~-------adiVi~~vp~~~~~~~~v~~~ 67 (301)
|...+..+...+ ++|. ++|+++++.+.+.+. |+ ..++++++++++ .|+|++|+|+... ..-+..
T Consensus 52 g~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H-~~~~~~- 129 (417)
T 3v5n_A 52 GAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAIVTPNHVH-YAAAKE- 129 (417)
T ss_dssp HHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEECSCTTSH-HHHHHH-
T ss_pred HHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEECCCcHHH-HHHHHH-
Confidence 445566666655 6765 679999998887654 76 578899999876 8999999998764 333221
Q ss_pred CCccccCCCCCCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 68 PNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 68 ~~~~l~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
.++ .+..++++.- +.+.+.++++.+..++
T Consensus 130 ---al~----aGkhVl~EKPla~~~~ea~~l~~~a~~ 159 (417)
T 3v5n_A 130 ---FLK----RGIHVICDKPLTSTLADAKKLKKAADE 159 (417)
T ss_dssp ---HHT----TTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred ---HHh----CCCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 232 1234666653 6788888888887765
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.011 Score=54.94 Aligned_cols=113 Identities=11% Similarity=0.082 Sum_probs=78.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CCccccccCCCCCCcccCC-CCCC-CC
Q 022170 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGV-PASR-NY 237 (301)
Q Consensus 167 g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~------~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~-~~ 237 (301)
+..+.+|++.|.+-+..+...+|++.+.++ .++|...+.++++.|+ .+|+++..... .+... -++. -+
T Consensus 322 ~~~~~~~~v~~al~~~~i~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~---a~~~~~~l~~l~~ 398 (497)
T 2p4q_A 322 DREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIALMWRGGCIIRSVFLGQITK---AYREEPDLENLLF 398 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSSSTTCBHHHHHHHH---HHHHCTTCSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCchHHHHHHHHHH---HHhcCCChhhhhc
Confidence 478999999999999999999999999988 7899999999999875 45665431100 00000 0000 00
Q ss_pred CCCc--chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCC
Q 022170 238 GGGF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGH 282 (301)
Q Consensus 238 ~~~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~ 282 (301)
++-| .+.......+.++..|-+.|+|+|.+.+++..|+.-...-.
T Consensus 399 ~~~f~~~~~~~~~~~r~~v~~a~~~gvp~P~~s~aL~~~~~~~~~~~ 445 (497)
T 2p4q_A 399 NKFFADAVTKAQSGWRKSIALATTYGIPTPAFSTALSFYDGYRSERL 445 (497)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCc
Confidence 1112 12333445788999999999999999999997776544333
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.015 Score=52.40 Aligned_cols=94 Identities=12% Similarity=0.206 Sum_probs=65.3
Q ss_pred CcHHHHHHHHhCC-CeEE--EEcCChhhHHHHHh-CCC---CCCCCHHHHHhc-------CCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKAG-YKMA--VHDVNCNVMKMFSD-MGV---PTKETPFEVAEA-------SDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~--~~dr~~~~~~~l~~-~g~---~~~~s~~e~~~~-------adiVi~~vp~~~~~~~~v~~ 66 (301)
||...+..+...+ ++|. ++|+++++.+.+.+ .|+ ..++|+++++++ .|+|++|+|+... ..-+..
T Consensus 26 ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H-~~~~~~ 104 (398)
T 3dty_A 26 IGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSIATPNGTH-YSITKA 104 (398)
T ss_dssp SHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEEESCGGGH-HHHHHH
T ss_pred hHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEECCCcHHH-HHHHHH
Confidence 5667777777665 6765 57999999988765 477 578899999875 8999999997754 333221
Q ss_pred CCCccccCCCCCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 67 GPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 67 ~~~~~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
.++. +..++++- -+.+.+.++++.+..++
T Consensus 105 ----al~a----GkhVl~EKPla~~~~ea~~l~~~a~~ 134 (398)
T 3dty_A 105 ----ALEA----GLHVVCEKPLCFTVEQAENLRELSHK 134 (398)
T ss_dssp ----HHHT----TCEEEECSCSCSCHHHHHHHHHHHHH
T ss_pred ----HHHC----CCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 2321 22355543 25678888888887765
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.004 Score=54.64 Aligned_cols=56 Identities=20% Similarity=0.161 Sum_probs=42.5
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHh---C-------C--CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD---M-------G--VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~---~-------g--~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
||+++|..|+..|+ +|.+||+++++++.... . . +..+++. +++++||+||++++.+
T Consensus 15 vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~p 83 (322)
T 1t2d_A 15 IGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGFT 83 (322)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSCS
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCCC
Confidence 68999999999998 99999999987653211 1 1 2233566 7889999999999543
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0055 Score=52.44 Aligned_cols=82 Identities=9% Similarity=-0.043 Sum_probs=52.9
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CC--CCCCCHHHHH-hcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GV--PTKETPFEVA-EASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~--~~~~s~~e~~-~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||.+++..|.+.|. +|++++|++++.+++.+. +. ....+.++.. .++|+||.|+|.... -...... ...+
T Consensus 131 ~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~-~~~~~i~-~~~l--- 205 (272)
T 3pwz_A 131 AVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLT-ADLPPLP-ADVL--- 205 (272)
T ss_dssp HHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGG-TCCCCCC-GGGG---
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCC-CCCCCCC-HHHh---
Confidence 47899999999996 999999999999887654 11 0111233332 689999999995431 1100000 1122
Q ss_pred CCCCCeEEEEeCCC
Q 022170 76 NSVRPQLLIDSSTI 89 (301)
Q Consensus 76 ~~~~~~ivid~st~ 89 (301)
.++.+++|+...
T Consensus 206 --~~~~~V~DlvY~ 217 (272)
T 3pwz_A 206 --GEAALAYELAYG 217 (272)
T ss_dssp --TTCSEEEESSCS
T ss_pred --CcCCEEEEeecC
Confidence 356799999765
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.013 Score=54.12 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=59.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhh-hhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLD-VYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~-v~~~~~~~l~~~~~~~ 79 (301)
+|.++|+.|...|.+|+++|+++.+.......|.. ..++++++..+|+|+.+...... +.. .+ .. ..+
T Consensus 276 IG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~d-v~~lee~~~~aDvVi~atG~~~v-l~~e~l-------~~--mk~ 344 (488)
T 3ond_A 276 VGKGCAAALKQAGARVIVTEIDPICALQATMEGLQ-VLTLEDVVSEADIFVTTTGNKDI-IMLDHM-------KK--MKN 344 (488)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCGGGTTTTCSEEEECSSCSCS-BCHHHH-------TT--SCT
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCc-cCCHHHHHHhcCEEEeCCCChhh-hhHHHH-------Hh--cCC
Confidence 58999999999999999999999988877777764 35778888999999998774433 322 22 11 235
Q ss_pred CeEEEEeCCC
Q 022170 80 PQLLIDSSTI 89 (301)
Q Consensus 80 ~~ivid~st~ 89 (301)
+.++++.+..
T Consensus 345 gaiVvNaG~~ 354 (488)
T 3ond_A 345 NAIVCNIGHF 354 (488)
T ss_dssp TEEEEESSST
T ss_pred CeEEEEcCCC
Confidence 6788888754
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0056 Score=52.35 Aligned_cols=56 Identities=11% Similarity=0.247 Sum_probs=43.0
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||.+++..|.+.|. +|++|||++++.+.+.+. +.....++. ..++|+||.|+|...
T Consensus 130 aarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm 187 (271)
T 1npy_A 130 MAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGM 187 (271)
T ss_dssp THHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTC
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCc
Confidence 68899999999997 799999999998888754 332222222 467999999999654
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0046 Score=55.16 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=42.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHHh-cCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAE-ASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~-~adiVi~~vp 55 (301)
||..+|+.|.+.|++|+++|+++++++++.+. |+... +..+... .||+++.|..
T Consensus 184 VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~ 239 (364)
T 1leh_A 184 VAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCAL 239 (364)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSC
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccch
Confidence 68999999999999999999999988877654 65544 4445444 8999998864
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0059 Score=55.32 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=46.6
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHh-CCCCC--CCCHHHHHhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD-MGVPT--KETPFEVAEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~-~g~~~--~~s~~e~~~~adiVi~~vp~~~~ 59 (301)
||..+++.|...|. +|+++||++++.+.+.+ .|+.. ..++.+.+.++|+||.|+|.+..
T Consensus 178 iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~~ 240 (404)
T 1gpj_A 178 MGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPHP 240 (404)
T ss_dssp HHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSSC
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCCc
Confidence 68889999999998 89999999998755543 35432 24677888899999999986543
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.021 Score=47.91 Aligned_cols=83 Identities=12% Similarity=0.140 Sum_probs=53.5
Q ss_pred CcHHHHHHHHhCCCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||+.+++.+.+.++++. ++||+++. ..|+..+++++++. ++|+||-+.+ +.. +.+.+. ++ .+
T Consensus 14 MG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft~-p~a-~~~~~~-----l~----~g 76 (243)
T 3qy9_A 14 MNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFSN-PNL-LFPLLD-----ED----FH 76 (243)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECSC-HHH-HHHHHT-----SC----CC
T ss_pred HHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeCC-hHH-HHHHHH-----Hh----cC
Confidence 79999999998887755 47988763 35788888998888 9999985444 233 455543 22 12
Q ss_pred CeEEEEeCCCCHHHHHHHHHH
Q 022170 80 PQLLIDSSTIDPQTSRNISAA 100 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~ 100 (301)
..+|+-+++.+++...++.+.
T Consensus 77 ~~vVigTTG~s~e~~~~l~~a 97 (243)
T 3qy9_A 77 LPLVVATTGEKEKLLNKLDEL 97 (243)
T ss_dssp CCEEECCCSSHHHHHHHHHHH
T ss_pred CceEeCCCCCCHHHHHHHHHH
Confidence 246665555555555555444
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.018 Score=53.40 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=79.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CCccccccCCCCCCcccCC-CCCC-CC
Q 022170 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGV-PASR-NY 237 (301)
Q Consensus 167 g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~------~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~-~~ 237 (301)
+..+.+|++.|.+-+..+...+|++.+.++ .++|..++.++++.|+ .+|+++..... .+... -++. -+
T Consensus 325 ~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~---a~~~~~~l~~l~~ 401 (480)
T 2zyd_A 325 DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITD---ACAENPQIANLLL 401 (480)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSSTTCBTHHHHHHH---HHHHCTTCSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHH---HHhcCCChHhhhc
Confidence 788999999999999999999999999988 7899999999999775 45555431100 00000 0000 00
Q ss_pred CCCc--chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCC
Q 022170 238 GGGF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHD 283 (301)
Q Consensus 238 ~~~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g 283 (301)
++-| .+.......+.++..|-+.|+|+|.+.++...|+.-...-.+
T Consensus 402 ~~~f~~~~~~~~~~~r~~v~~a~~~gvp~p~~s~al~~~~~~~~~~~~ 449 (480)
T 2zyd_A 402 APYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLP 449 (480)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCch
Confidence 1112 123334457889999999999999999999988776544443
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0066 Score=52.99 Aligned_cols=76 Identities=21% Similarity=0.139 Sum_probs=51.9
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhH----HHHHhCCCC-C-----C--CCHHHHHhcCCEEEEecCCCccchhhhhcCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVM----KMFSDMGVP-T-----K--ETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 69 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~----~~l~~~g~~-~-----~--~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~ 69 (301)
|.++|+.|...|..|++.||+..+. +.+... .. . + .++.+.+.++|+||.+++.+. -++..
T Consensus 190 G~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~-~~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p~----~vI~~-- 262 (320)
T 1edz_A 190 GRPLAALLANDGATVYSVDVNNIQKFTRGESLKLN-KHHVEDLGEYSEDLLKKCSLDSDVVITGVPSEN----YKFPT-- 262 (320)
T ss_dssp HHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCC-CCEEEEEEECCHHHHHHHHHHCSEEEECCCCTT----CCBCT--
T ss_pred HHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhh-cccccccccccHhHHHHHhccCCEEEECCCCCc----ceeCH--
Confidence 8899999999999999999984432 222211 11 1 1 467889999999999998532 12221
Q ss_pred ccccCCCCCCCeEEEEeCCC
Q 022170 70 GLLQGGNSVRPQLLIDSSTI 89 (301)
Q Consensus 70 ~~l~~~~~~~~~ivid~st~ 89 (301)
.++ .+|.++||.+.-
T Consensus 263 e~v-----k~GavVIDVgi~ 277 (320)
T 1edz_A 263 EYI-----KEGAVCINFACT 277 (320)
T ss_dssp TTS-----CTTEEEEECSSS
T ss_pred HHc-----CCCeEEEEcCCC
Confidence 223 357899999764
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0051 Score=56.84 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=42.2
Q ss_pred cHHHHHHHHhC----CCeEEEEcCChhhHHHHHh--------C----CCCCCCCHHHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLMKA----GYKMAVHDVNCNVMKMFSD--------M----GVPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~~~----G~~V~~~dr~~~~~~~l~~--------~----g~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
|.++|..|++. |++|.+||+++++++.... . .+..++++.+++++||+||+++|..
T Consensus 17 g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VIiaagv~ 88 (480)
T 1obb_A 17 SLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVINTAMVG 88 (480)
T ss_dssp HHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEEECCCTT
T ss_pred HHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEEECCCcc
Confidence 56667788754 8999999999988664322 1 1334568888999999999999853
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.02 Score=52.87 Aligned_cols=91 Identities=18% Similarity=0.244 Sum_probs=60.2
Q ss_pred CcHHHHHHHHhC-CCeEEEEcCChhhHHHHHhC-CCCC----C---CCHHHHHhcCCEEEEecCCCccchhhhhcCCCcc
Q 022170 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDM-GVPT----K---ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGL 71 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~-g~~~----~---~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~ 71 (301)
+|.+++..|++. |++|++++|++++++.+.+. ++.. . +++.++++++|+||.|+|.... ..+.. ..
T Consensus 34 iG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~~--~~v~~---a~ 108 (467)
T 2axq_A 34 VAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTFH--PNVVK---SA 108 (467)
T ss_dssp THHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGGH--HHHHH---HH
T ss_pred HHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhhh--HHHHH---HH
Confidence 689999999998 78999999999998887653 3221 1 1445667899999999995432 22221 12
Q ss_pred ccCCCCCCCeEEEEeCCCCHHHHHHHHHHHh
Q 022170 72 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 72 l~~~~~~~~~ivid~st~~p~~~~~~~~~~~ 102 (301)
+. .+..++|.+...|.. ..+.+...
T Consensus 109 l~-----~g~~vvd~~~~~p~~-~~Ll~~Ak 133 (467)
T 2axq_A 109 IR-----TKTDVVTSSYISPAL-RELEPEIV 133 (467)
T ss_dssp HH-----HTCEEEECSCCCHHH-HHHHHHHH
T ss_pred Hh-----cCCEEEEeecCCHHH-HHHHHHHH
Confidence 21 346778877666664 34444443
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.002 Score=55.14 Aligned_cols=84 Identities=10% Similarity=-0.000 Sum_probs=52.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CC--CC-CCCHHHHHh-cCCEEEEecCCCccchhhhhcCC-CccccC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GV--PT-KETPFEVAE-ASDVVITMLPSSSHQVLDVYNGP-NGLLQG 74 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~--~~-~~s~~e~~~-~adiVi~~vp~~~~~~~~v~~~~-~~~l~~ 74 (301)
||.+++..|++.|++|++|||++++.+.+.+. +. .. ..+++++.+ .+|+||.|+|.+.. .++. .. ...+
T Consensus 130 ~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~--~~~~-~i~~~~l-- 204 (272)
T 1p77_A 130 ATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLS--GGTA-SVDAEIL-- 204 (272)
T ss_dssp HHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC----------CCCHHHH--
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCC--CCCC-CCCHHHc--
Confidence 58899999999999999999999998877643 11 11 123333323 89999999996542 2221 01 1112
Q ss_pred CCCCCCeEEEEeCCCCHH
Q 022170 75 GNSVRPQLLIDSSTIDPQ 92 (301)
Q Consensus 75 ~~~~~~~ivid~st~~p~ 92 (301)
.++.+++|++...+.
T Consensus 205 ---~~~~~v~D~~y~p~~ 219 (272)
T 1p77_A 205 ---KLGSAFYDMQYAKGT 219 (272)
T ss_dssp ---HHCSCEEESCCCTTS
T ss_pred ---CCCCEEEEeeCCCCc
Confidence 235689999885443
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.16 Score=43.07 Aligned_cols=110 Identities=17% Similarity=0.172 Sum_probs=75.1
Q ss_pred CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCC
Q 022170 33 GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 112 (301)
Q Consensus 33 g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~ 112 (301)
|++++++..|+++++|++|+-+|.... ...++.. ++++ .+.|.+|.++.|++|-..-.+-+.+.+.
T Consensus 128 GVkVtsDD~EAvk~AEi~IlftPfG~~-t~~Iakk---ii~~--lpEgAII~nTCTipp~~ly~~le~l~R~-------- 193 (358)
T 2b0j_A 128 GLKVTSDDREAVEGADIVITWLPKGNK-QPDIIKK---FADA--IPEGAIVTHACTIPTTKFAKIFKDLGRE-------- 193 (358)
T ss_dssp TCEEESCHHHHHTTCSEEEECCTTCTT-HHHHHHH---HGGG--SCTTCEEEECSSSCHHHHHHHHHHTTCT--------
T ss_pred CcEeecchHHHhcCCCEEEEecCCCCC-cHHHHHH---HHhh--CcCCCEEecccCCCHHHHHHHHHHhCcc--------
Confidence 788899999999999999999998764 4445433 4443 3578899999999998766666654321
Q ss_pred CCCceEE---ecccCCCHHHhhccceEEEec-CCHHHHHHHHHHHHhcCCCeEee
Q 022170 113 WENPVML---DAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYC 163 (301)
Q Consensus 113 ~~~~~~~---~~pv~g~~~~a~~g~l~~~~g-g~~~~~~~~~~ll~~~~~~~~~~ 163 (301)
++... .+.|=|. .|+.++--+ .+++..+++..+-+..++..+.+
T Consensus 194 --DvgIsS~HPaaVPgt-----~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~v 241 (358)
T 2b0j_A 194 --DLNITSYHPGCVPEM-----KGQVYIAEGYASEEAVNKLYEIGKIARGKAFKM 241 (358)
T ss_dssp --TSEEEECBCSSCTTT-----CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred --cCCeeccCCCCCCCC-----CCccccccccCCHHHHHHHHHHHHHhCCCeEec
Confidence 12222 2222222 344222222 27888999999999999888776
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.021 Score=52.86 Aligned_cols=113 Identities=9% Similarity=0.084 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CCccccccCCCCCCcccCC-CCCC-CC
Q 022170 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGV-PASR-NY 237 (301)
Q Consensus 167 g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~------~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~-~~ 237 (301)
+..+.+|++.|.+-+..+...+|++.+.++ .++|...+.++++.|+ .+++++..... .+... -+.. -+
T Consensus 317 ~~~~~~~~v~~al~~~~~~~yaqGf~ll~~a~~~~~~~l~~~~ia~~wr~Gciirs~~l~~i~~---a~~~~~~l~~l~~ 393 (474)
T 2iz1_A 317 DKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITD---AFDKDSELENLLL 393 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSCTTCBTTHHHHHH---HHHHCTTCCCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHHHHHHHHHH---HHhcCCChhhhhc
Confidence 788999999999999999999999999988 7899999999999775 45555431100 00000 0000 00
Q ss_pred CCCcc--hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCC
Q 022170 238 GGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGH 282 (301)
Q Consensus 238 ~~~~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~ 282 (301)
++-|. +.......+.++..|-+.|+|+|.+.++...|+.-...-.
T Consensus 394 ~~~~~~~~~~~~~~~r~~v~~a~~~~~p~p~~s~al~~~~~~~~~~~ 440 (474)
T 2iz1_A 394 DDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRSENL 440 (474)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCc
Confidence 11121 2333455788999999999999999999997776544333
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.011 Score=53.95 Aligned_cols=94 Identities=14% Similarity=0.196 Sum_probs=63.8
Q ss_pred CcH-HHHHHHHhC-CCeE-EEEcCChhhHHHHHhC-CCC-----CCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCC
Q 022170 1 MGF-RMASNLMKA-GYKM-AVHDVNCNVMKMFSDM-GVP-----TKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPN 69 (301)
Q Consensus 1 mG~-~lA~~L~~~-G~~V-~~~dr~~~~~~~l~~~-g~~-----~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~ 69 (301)
||. .++..|.+. +++| .++|+++++.+.+.+. |+. ..++++++++ +.|+|++|+|+... .+++..
T Consensus 94 ~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~h--~~~~~~-- 169 (433)
T 1h6d_A 94 YALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH--AEFAIR-- 169 (433)
T ss_dssp HHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH--HHHHHH--
T ss_pred HHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchhH--HHHHHH--
Confidence 454 677777664 4665 5889999998877654 654 5788999886 79999999997654 333321
Q ss_pred ccccCCCCCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 70 GLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 70 ~~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
.++. +..++++. .+.++.+.+++.+..++
T Consensus 170 -al~a----Gk~Vl~EKPla~~~~e~~~l~~~a~~ 199 (433)
T 1h6d_A 170 -AFKA----GKHVMCEKPMATSVADCQRMIDAAKA 199 (433)
T ss_dssp -HHHT----TCEEEECSSCCSSHHHHHHHHHHHHH
T ss_pred -HHHC----CCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 2321 22466654 46678888888887764
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0062 Score=55.36 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=47.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC----CC---HHHH-HhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ET---PFEV-AEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s---~~e~-~~~adiVi~~vp~~~~ 59 (301)
+|..+++.|.+.|++|++.|+|+++++.+.+.|..+. ++ +.++ +.++|+||++++++..
T Consensus 15 ~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~ 81 (413)
T 3l9w_A 15 FGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT 81 (413)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHH
Confidence 4889999999999999999999999999988876442 22 2233 4689999999997754
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.011 Score=51.54 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=41.7
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHH----hC------CC--CCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----DM------GV--PTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~----~~------g~--~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
||.++|..|+..|+ +|.++|+++++++... +. .. ..+++. +++++||+||++++.+
T Consensus 13 vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p 81 (309)
T 1ur5_A 13 VGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP 81 (309)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence 68999999999997 9999999987765321 11 12 223566 7789999999998655
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.012 Score=52.50 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=44.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC-------CCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-------ETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-------~s~~e~~~~adiVi~~vp~~ 57 (301)
+|...+..+...|.+|+++||++++.+.+.+.+.... .++.+.+.++|+||-|++.+
T Consensus 178 vG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~ 241 (361)
T 1pjc_A 178 VGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVP 241 (361)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcC
Confidence 4788899999999999999999999888766543221 23456677899999999754
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0076 Score=51.85 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=44.7
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC------CCC--CC--CCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM------GVP--TK--ETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~------g~~--~~--~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.+++..|.+.|. +|+++||++++.+.+.+. +.. .. +++.+.+.++|+||-|+|-.
T Consensus 138 ~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~G 205 (283)
T 3jyo_A 138 VGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMG 205 (283)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSSTT
T ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCCC
Confidence 47889999999998 699999999998877542 111 22 37778888999999999953
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.032 Score=47.70 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=45.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|.++|..|.+.|..|++.+++ +.++++.+.+||+||.+++.+.- +.. ..+ .+|
T Consensus 173 VG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~-I~~------~~v-----k~G 226 (285)
T 3l07_A 173 VGKPVSQLLLNAKATVTTCHRF--------------TTDLKSHTTKADILIVAVGKPNF-ITA------DMV-----KEG 226 (285)
T ss_dssp THHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC-BCG------GGS-----CTT
T ss_pred hHHHHHHHHHHCCCeEEEEeCC--------------chhHHHhcccCCEEEECCCCCCC-CCH------HHc-----CCC
Confidence 4778888888888888887653 34788999999999999995432 211 233 357
Q ss_pred eEEEEeCC
Q 022170 81 QLLIDSST 88 (301)
Q Consensus 81 ~ivid~st 88 (301)
.++||.+.
T Consensus 227 avVIDvgi 234 (285)
T 3l07_A 227 AVVIDVGI 234 (285)
T ss_dssp CEEEECCC
T ss_pred cEEEEecc
Confidence 89999874
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.01 Score=51.52 Aligned_cols=89 Identities=19% Similarity=0.148 Sum_probs=51.8
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhCCCCC--CCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPT--KETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~g~~~--~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||..++..|.+. +++|. ++|+++++++. .|+.. .+++.+. .++|+|++|+|+... .+++. ..++
T Consensus 20 iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h--~~~~~---~al~--- 87 (304)
T 3bio_A 20 IGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREV--ERTAL---EILK--- 87 (304)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHH--HHHHH---HHHT---
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhh--HHHHH---HHHH---
Confidence 578888888874 67876 78999987765 55542 3344444 689999999996553 33332 1232
Q ss_pred CCCCeEEEEeCCC---CHHHHHHHHHHHhh
Q 022170 77 SVRPQLLIDSSTI---DPQTSRNISAAVSN 103 (301)
Q Consensus 77 ~~~~~ivid~st~---~p~~~~~~~~~~~~ 103 (301)
.|+.+++.+.. .+...+++.+..++
T Consensus 88 --aG~~Vi~ekP~~a~~~~~~~~l~~~a~~ 115 (304)
T 3bio_A 88 --KGICTADSFDIHDGILALRRSLGDAAGK 115 (304)
T ss_dssp --TTCEEEECCCCGGGHHHHHHHHHHHHHH
T ss_pred --cCCeEEECCCCCCCCHHHHHHHHHHHHh
Confidence 35566766543 55666777666554
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.033 Score=47.95 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=46.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
.|.++|..|...|..|++.+++ +.++.+.+++||+||.+++.+.- +.. .++ .+|
T Consensus 177 VG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~-I~~------~~v-----k~G 230 (301)
T 1a4i_A 177 VGAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVATGQPEM-VKG------EWI-----KPG 230 (301)
T ss_dssp THHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC-BCG------GGS-----CTT
T ss_pred HHHHHHHHHHhCCCeEEEEECC--------------cccHHHHhccCCEEEECCCCccc-CCH------HHc-----CCC
Confidence 3777888888888888877643 35788999999999999996532 211 233 357
Q ss_pred eEEEEeCCCC
Q 022170 81 QLLIDSSTID 90 (301)
Q Consensus 81 ~ivid~st~~ 90 (301)
.++||.+...
T Consensus 231 avVIDVgi~~ 240 (301)
T 1a4i_A 231 AIVIDCGINY 240 (301)
T ss_dssp CEEEECCCBC
T ss_pred cEEEEccCCC
Confidence 8999998643
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0051 Score=56.39 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=43.5
Q ss_pred cHHHHHHHHh----CCCeEEEEcCChhhHHHHHhC---------CCCCCCCHHHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLMK----AGYKMAVHDVNCNVMKMFSDM---------GVPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~~----~G~~V~~~dr~~~~~~~l~~~---------g~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
|.+++..|+. .| +|++||+++++++.+... .++.++++++++++||+||++++..
T Consensus 19 g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~airvG 86 (450)
T 3fef_A 19 ARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISILPG 86 (450)
T ss_dssp HHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEECCCSS
T ss_pred HHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEeccccC
Confidence 5688888886 56 999999999887654331 2455679999999999999999843
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.019 Score=51.92 Aligned_cols=80 Identities=18% Similarity=0.136 Sum_probs=58.4
Q ss_pred cHHHHHHHHhCCCeEEEEcCCh------hhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNC------NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~------~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
|.+-|.||.++|.+|.+--|.- ...+...+.|.++ .+.+|+++.+|+|++.+||.. -.+++.. +.+.
T Consensus 49 G~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v-~~~~eA~~~ADvV~~L~PD~~--q~~vy~~---I~p~- 121 (491)
T 3ulk_A 49 GLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDKQ--HSDVVRT---VQPL- 121 (491)
T ss_dssp HHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEE-EEHHHHGGGCSEEEECSCGGG--HHHHHHH---HGGG-
T ss_pred hHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEe-cCHHHHHHhCCEEEEeCChhh--HHHHHHH---HHhh-
Confidence 7789999999999998876622 3455667778775 579999999999999999754 4667654 3333
Q ss_pred CCCCCeEEEEeCCC
Q 022170 76 NSVRPQLLIDSSTI 89 (301)
Q Consensus 76 ~~~~~~ivid~st~ 89 (301)
..+|.++.-..+.
T Consensus 122 -lk~G~~L~faHGF 134 (491)
T 3ulk_A 122 -MKDGAALGYSHGF 134 (491)
T ss_dssp -SCTTCEEEESSCH
T ss_pred -CCCCCEEEecCcc
Confidence 2456677655553
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.029 Score=49.66 Aligned_cols=92 Identities=14% Similarity=0.243 Sum_probs=62.5
Q ss_pred cHH-HHHHHHhC-CCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHHhc--CCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 2 GFR-MASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 2 G~~-lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~~--adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
|.. .+..|.+. +++|. ++|+++++.++ ...+...++|+++++++ .|+|++|+|+... ..-+.. .++
T Consensus 19 g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H-~~~~~~----al~--- 89 (352)
T 3kux_A 19 SKTFHAPLIMGTPGLELAGVSSSDASKVHA-DWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTH-FPLAQS----ALA--- 89 (352)
T ss_dssp HHHTHHHHHHTSTTEEEEEEECSCHHHHHT-TCSSCCEESCHHHHHHCSSCCEEEECSCTTTH-HHHHHH----HHH---
T ss_pred HHHHHHHHHhhCCCcEEEEEECCCHHHHHh-hCCCCceECCHHHHhcCCCCCEEEEeCChHHH-HHHHHH----HHH---
Confidence 444 45566655 67765 78999988762 11256778899999875 9999999998764 333321 232
Q ss_pred CCCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 77 SVRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 77 ~~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
.+..++++.- +.++..++++.+..++
T Consensus 90 -aGkhV~~EKPla~~~~e~~~l~~~a~~ 116 (352)
T 3kux_A 90 -AGKHVVVDKPFTVTLSQANALKEHADD 116 (352)
T ss_dssp -TTCEEEECSSCCSCHHHHHHHHHHHHH
T ss_pred -CCCcEEEECCCcCCHHHHHHHHHHHHH
Confidence 1235677665 6788889998887765
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.039 Score=47.12 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=45.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
.|.++|..|.+.|..|++.+++ +.++++.+++||+||.+++.+.- + . ..++ .+|
T Consensus 172 VG~p~A~lL~~~gAtVtv~h~~--------------t~~L~~~~~~ADIVI~Avg~p~~-I----~--~~~v-----k~G 225 (285)
T 3p2o_A 172 VGRPMATMLLNAGATVSVCHIK--------------TKDLSLYTRQADLIIVAAGCVNL-L----R--SDMV-----KEG 225 (285)
T ss_dssp THHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHTTCSEEEECSSCTTC-B----C--GGGS-----CTT
T ss_pred HHHHHHHHHHHCCCeEEEEeCC--------------chhHHHHhhcCCEEEECCCCCCc-C----C--HHHc-----CCC
Confidence 3778888888888888887753 35788999999999999995432 2 1 1233 367
Q ss_pred eEEEEeCC
Q 022170 81 QLLIDSST 88 (301)
Q Consensus 81 ~ivid~st 88 (301)
.+|||.+.
T Consensus 226 avVIDVgi 233 (285)
T 3p2o_A 226 VIVVDVGI 233 (285)
T ss_dssp EEEEECCC
T ss_pred eEEEEecc
Confidence 89999875
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0085 Score=46.24 Aligned_cols=58 Identities=7% Similarity=0.094 Sum_probs=40.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCC-hhhHHHHH---hCCCCC-----C--CCHHHH-HhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVN-CNVMKMFS---DMGVPT-----K--ETPFEV-AEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~-~~~~~~l~---~~g~~~-----~--~s~~e~-~~~adiVi~~vp~~~ 58 (301)
+|..++..|.+.||+|++.+++ +++.+.+. ..|... . ..+.++ +.++|+|+++++++.
T Consensus 14 vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~ 83 (153)
T 1id1_A 14 LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA 83 (153)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCChH
Confidence 4889999999999999999998 45554443 223221 1 123344 678999999998764
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0081 Score=53.09 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=56.1
Q ss_pred CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHHhc--CCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeC-
Q 022170 13 GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEA--SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSS- 87 (301)
Q Consensus 13 G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~--adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s- 87 (301)
+++|. ++|+++++.+...+. ++..++|+++++++ .|+|++|+|+... ...+.. .++ .|+.|+.-+
T Consensus 28 ~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h-~~~~~~----al~-----aGk~Vl~EKP 97 (345)
T 3f4l_A 28 SWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH-FEYAKR----ALE-----AGKNVLVEKP 97 (345)
T ss_dssp TEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGH-HHHHHH----HHH-----TTCEEEECSS
T ss_pred CeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHH-HHHHHH----HHH-----cCCcEEEeCC
Confidence 67766 889998877555443 66778899999876 8999999997764 333321 232 234444334
Q ss_pred -CCCHHHHHHHHHHHhh
Q 022170 88 -TIDPQTSRNISAAVSN 103 (301)
Q Consensus 88 -t~~p~~~~~~~~~~~~ 103 (301)
+.+++.++++.+..++
T Consensus 98 ~a~~~~e~~~l~~~a~~ 114 (345)
T 3f4l_A 98 FTPTLAQAKELFALAKS 114 (345)
T ss_dssp SCSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 6788889898887765
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.017 Score=47.81 Aligned_cols=55 Identities=15% Similarity=0.036 Sum_probs=39.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC-CC-----CCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV-PT-----KETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~-~~-----~~s~~e~~~~adiVi~~vp 55 (301)
+|+.+++.|++.||+|++.+|++++.+.+...++ .. ..++.+++.++|+||.+..
T Consensus 33 iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag 93 (236)
T 3e8x_A 33 VARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAG 93 (236)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCC
T ss_pred HHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCC
Confidence 4899999999999999999999998887776554 21 1333444555566655544
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.026 Score=50.21 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=60.1
Q ss_pred cHH-HHHHHHhC-CCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 2 GFR-MASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 2 G~~-lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
|.. .+..|.+. +++|. ++|++++++.. ...+...+++++++++ +.|+|++|+|+... ...+.. .++
T Consensus 19 g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H-~~~~~~----al~--- 89 (364)
T 3e82_A 19 GKTFHAPLIRSVPGLNLAFVASRDEEKVKR-DLPDVTVIASPEAAVQHPDVDLVVIASPNATH-APLARL----ALN--- 89 (364)
T ss_dssp HHHTHHHHHHTSTTEEEEEEECSCHHHHHH-HCTTSEEESCHHHHHTCTTCSEEEECSCGGGH-HHHHHH----HHH---
T ss_pred HHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-hCCCCcEECCHHHHhcCCCCCEEEEeCChHHH-HHHHHH----HHH---
Confidence 444 45555554 67765 78999987652 2225677889999987 78999999997654 333321 232
Q ss_pred CCCCeEEEEeC--CCCHHHHHHHHHHHhh
Q 022170 77 SVRPQLLIDSS--TIDPQTSRNISAAVSN 103 (301)
Q Consensus 77 ~~~~~ivid~s--t~~p~~~~~~~~~~~~ 103 (301)
.|+-|+.-+ +.++..++++.+..++
T Consensus 90 --aGk~Vl~EKPla~~~~e~~~l~~~a~~ 116 (364)
T 3e82_A 90 --AGKHVVVDKPFTLDMQEARELIALAEE 116 (364)
T ss_dssp --TTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred --CCCcEEEeCCCcCCHHHHHHHHHHHHH
Confidence 233344344 6788888888887765
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0062 Score=52.71 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=42.6
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHH----HHh----C--C--CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSD----M--G--VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~----l~~----~--g--~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
||+++|..|+.+|+ +|.+||+++++++. +.. . . +..+++ .+++++||+||++.+.+
T Consensus 11 vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~~ 80 (294)
T 1oju_A 11 VGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGLA 80 (294)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCCC
Confidence 68999999999998 99999999988641 211 1 1 222345 78899999999998765
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0083 Score=52.69 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=43.4
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHH----HHhC------CCCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM------GVPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~----l~~~------g~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
||.++|..|+..|+ +|.++|+++++++. +... +....++..+++++||+||++.+.+
T Consensus 16 vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~p 84 (326)
T 3pqe_A 16 VGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGAN 84 (326)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecccC
Confidence 68999999999997 89999999988765 4432 2223334457789999999998765
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.041 Score=50.39 Aligned_cols=94 Identities=11% Similarity=0.064 Sum_probs=64.2
Q ss_pred CcHHHHHHHHhC-CCeE-EEEcCChhhHHHHHh----CC---CCCCC----CHHHHHh--cCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSD----MG---VPTKE----TPFEVAE--ASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V-~~~dr~~~~~~~l~~----~g---~~~~~----s~~e~~~--~adiVi~~vp~~~~~~~~v~ 65 (301)
||...+..|.+. |++| .++|+++++++.+.+ .| ....+ +++++++ +.|+|++|+|+... ...+.
T Consensus 31 ~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~h-~~~~~ 109 (444)
T 2ixa_A 31 RGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSPWEWH-HEHGV 109 (444)
T ss_dssp HHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCCGGGH-HHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCCcHHH-HHHHH
Confidence 466777888764 6675 478999999887654 34 45566 8999987 58999999997764 33333
Q ss_pred cCCCccccCCCCCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 66 NGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 66 ~~~~~~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
. .++. +..++++. -+.+++.++++.+..++
T Consensus 110 ~----al~a----GkhV~~EKP~a~~~~ea~~l~~~a~~ 140 (444)
T 2ixa_A 110 A----AMKA----GKIVGMEVSGAITLEECWDYVKVSEQ 140 (444)
T ss_dssp H----HHHT----TCEEEECCCCCSSHHHHHHHHHHHHH
T ss_pred H----HHHC----CCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 2 2321 22456554 35678888888887765
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.01 Score=52.01 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=42.4
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHH----HHHh------CCCCC--CCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMK----MFSD------MGVPT--KETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~----~l~~------~g~~~--~~s~~e~~~~adiVi~~vp~~ 57 (301)
||.++|..|+..|+ +|.+||+++++++ .+.. ...+. +++. +++++||+||++.+.+
T Consensus 18 vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaag~p 86 (324)
T 3gvi_A 18 IGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTAGVP 86 (324)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEccCcC
Confidence 68999999999999 9999999998764 2221 12333 3455 7889999999998754
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.016 Score=50.03 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=60.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH-HHHHhCCCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~-~~l~~~g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||..+++++.+.|++ .++..||.+. +. ..|..+..|++++.+ ..|++++|+|.+. ..+++.. .++.
T Consensus 19 ~G~~~~~~l~~~g~~-~V~~V~p~~~g~~--~~G~~vy~sl~el~~~~~~D~viI~tP~~~--~~~~~~e---a~~~--- 87 (288)
T 2nu8_A 19 QGTFHSEQAIAYGTK-MVGGVTPGKGGTT--HLGLPVFNTVREAVAATGATASVIYVPAPF--CKDSILE---AIDA--- 87 (288)
T ss_dssp HHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCGGG--HHHHHHH---HHHT---
T ss_pred HHHHHHHHHHHCCCe-EEEEeCCCcccce--eCCeeccCCHHHHhhcCCCCEEEEecCHHH--HHHHHHH---HHHC---
Confidence 578889999888998 4455555432 11 347778889999987 8999999999654 4555532 2221
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
....+++-+++.+.+..+++.+..++
T Consensus 88 Gi~~iVi~t~G~~~~~~~~l~~~A~~ 113 (288)
T 2nu8_A 88 GIKLIITITEGIPTLDMLTVKVKLDE 113 (288)
T ss_dssp TCSEEEECCCCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 11223444455666666677776654
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.01 Score=54.71 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=42.4
Q ss_pred cHHHHHHHHhC-----CCeEEEEcCChhhHHHHHhC--------C----CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLMKA-----GYKMAVHDVNCNVMKMFSDM--------G----VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~~~-----G~~V~~~dr~~~~~~~l~~~--------g----~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
|.++|..|+++ +++|.+||+++++++..... + +..++++.+++++||+||+++|.+
T Consensus 41 ~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VViaag~~ 113 (472)
T 1u8x_X 41 TPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMAHIRVG 113 (472)
T ss_dssp HHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEECCCTT
T ss_pred HHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEEEcCCCc
Confidence 45678788887 67899999999886553221 1 334568889999999999999964
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.011 Score=52.88 Aligned_cols=93 Identities=13% Similarity=0.270 Sum_probs=60.8
Q ss_pred cHHHHHHHHhC--CCeEE-EEcCChhhHHHHHh-CCCCCCCCHHHHHhcCCEEEEecCCCccch---hhhhcCCCccccC
Q 022170 2 GFRMASNLMKA--GYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQV---LDVYNGPNGLLQG 74 (301)
Q Consensus 2 G~~lA~~L~~~--G~~V~-~~dr~~~~~~~l~~-~g~~~~~s~~e~~~~adiVi~~vp~~~~~~---~~v~~~~~~~l~~ 74 (301)
|...+..+.+. ++++. ++||++++.+++.+ .|+...+|.++++++.|+|++|+|+... . .++.. ..++
T Consensus 18 g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h-~~~~~~~a~---~al~- 92 (372)
T 4gmf_A 18 GEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVA-GGAGTQLAR---HFLA- 92 (372)
T ss_dssp THHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CT-TSHHHHHHH---HHHH-
T ss_pred HHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCccc-chhHHHHHH---HHHH-
Confidence 44445555543 56765 67999999888765 4888889999999999999999997642 1 22221 1222
Q ss_pred CCCCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 75 GNSVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 75 ~~~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.|+-|+.-.-+++++++++.+..++
T Consensus 93 ----aGkhVl~EKPl~~~ea~~l~~~A~~ 117 (372)
T 4gmf_A 93 ----RGVHVIQEHPLHPDDISSLQTLAQE 117 (372)
T ss_dssp ----TTCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ----cCCcEEEecCCCHHHHHHHHHHHHH
Confidence 2333333345778888888877665
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.063 Score=47.66 Aligned_cols=91 Identities=16% Similarity=0.211 Sum_probs=63.6
Q ss_pred HHHHHHHhCCCeEE-EEcCChhhHHHHHhC-C-CCCCCCHHHHHhc--CCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 4 RMASNLMKAGYKMA-VHDVNCNVMKMFSDM-G-VPTKETPFEVAEA--SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 4 ~lA~~L~~~G~~V~-~~dr~~~~~~~l~~~-g-~~~~~s~~e~~~~--adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
.++..+...+.+|. ++|+++++++.+.+. | ...++|+++++++ .|+|++|+|+... ..-+.. .++.
T Consensus 41 ~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H-~~~~~~----al~a---- 111 (361)
T 3u3x_A 41 GQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSER-AELAIR----AMQH---- 111 (361)
T ss_dssp HHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHH-HHHHHH----HHHT----
T ss_pred HHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHH-HHHHHH----HHHC----
Confidence 45666667788855 789999999887654 4 5678899999875 8999999997654 332221 2321
Q ss_pred CCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 79 RPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 79 ~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
+..++++-- +.+.+.++++.+..++
T Consensus 112 GkhVl~EKPla~~~~ea~~l~~~a~~ 137 (361)
T 3u3x_A 112 GKDVLVDKPGMTSFDQLAKLRRVQAE 137 (361)
T ss_dssp TCEEEEESCSCSSHHHHHHHHHHHHT
T ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 234666553 6678888888887764
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.042 Score=46.98 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=43.7
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|..|...|..|++++++. .++.+.+++||+||.+++.+. ++.. .++ .+|.
T Consensus 172 G~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~-----lI~~--~~v-----k~Ga 225 (288)
T 1b0a_A 172 GRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPG-----FIPG--DWI-----KEGA 225 (288)
T ss_dssp HHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTT-----CBCT--TTS-----CTTC
T ss_pred HHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhccCCEEEECCCCcC-----cCCH--HHc-----CCCc
Confidence 7777777777777777776432 578889999999999999543 2221 233 3578
Q ss_pred EEEEeCC
Q 022170 82 LLIDSST 88 (301)
Q Consensus 82 ivid~st 88 (301)
++||.+.
T Consensus 226 vVIDVgi 232 (288)
T 1b0a_A 226 IVIDVGI 232 (288)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999875
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.018 Score=46.79 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=41.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-----CCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-----KETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-----~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|+.+++.|++.||+|++.+|++++.+.+. .++.. .+...+++.++|+||.+....
T Consensus 12 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~ 72 (221)
T 3ew7_A 12 AGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGIS 72 (221)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCSS
T ss_pred hHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcCC
Confidence 489999999999999999999998877664 33221 111116778899999988653
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.035 Score=51.41 Aligned_cols=112 Identities=10% Similarity=0.087 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhhcC-CCccccccCCCCCCcccCCC-CCC-CCCC
Q 022170 169 GAAAKICNNLTMAVSMLGVSEALTLGQSL------GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVP-ASR-NYGG 239 (301)
Q Consensus 169 a~~~k~~~N~~~~~~~~~~~E~~~l~~~~------G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 239 (301)
.+.+|.+.|.+-+..+...+|++.+.++. ++|...+.++++.|+ .+++++..... .+...+ +.. -+++
T Consensus 316 ~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~~wr~Gciirs~~l~~i~~---a~~~~~~l~~l~~~~ 392 (482)
T 2pgd_A 316 KSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKD---AFDRNPGLQNLLLDD 392 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHH---HHHHCTTCSCGGGSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHH---HHhcCCChhhhhcCH
Confidence 89999999999999999999999999873 899999999999775 45555431100 000000 000 0011
Q ss_pred Cc--chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCC
Q 022170 240 GF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHD 283 (301)
Q Consensus 240 ~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g 283 (301)
.| .+.......+.++..|-+.|+|+|.+.++...|+.-...-.+
T Consensus 393 ~~~~~~~~~~~~~r~~v~~a~~~g~p~p~~s~al~~~~~~~~~~~~ 438 (482)
T 2pgd_A 393 FFKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHAMLP 438 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCcc
Confidence 11 133334567889999999999999999999977766544443
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.043 Score=48.30 Aligned_cols=93 Identities=17% Similarity=0.173 Sum_probs=63.3
Q ss_pred cHHHHHHHHhC--CCeE-EEEcCChhhHHHHHhC-CC-CCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccC
Q 022170 2 GFRMASNLMKA--GYKM-AVHDVNCNVMKMFSDM-GV-PTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQG 74 (301)
Q Consensus 2 G~~lA~~L~~~--G~~V-~~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~ 74 (301)
|...+..|.+. +++| .++|+++++.+.+.+. |. ..++|.+++++ +.|+|++|+|+... .+++.. .++.
T Consensus 31 g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H--~~~~~~---al~a 105 (340)
T 1zh8_A 31 RELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN--LPFIEK---ALRK 105 (340)
T ss_dssp HHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH--HHHHHH---HHHT
T ss_pred HHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchHH--HHHHHH---HHHC
Confidence 45567777765 4565 5789999999887654 65 66789999986 58999999997653 333321 2321
Q ss_pred CCCCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 75 GNSVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 75 ~~~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
+..++++. -+.+..+++++.+..++
T Consensus 106 ----GkhVl~EKPla~~~~ea~~l~~~a~~ 131 (340)
T 1zh8_A 106 ----GVHVICEKPISTDVETGKKVVELSEK 131 (340)
T ss_dssp ----TCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred ----CCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22466654 24678888888887764
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.063 Score=45.86 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=44.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
.|.++|..|.+.|..|++.++. +.++++.+++||+||.+++.+.- +.. .++ .+|
T Consensus 173 VG~plA~lL~~~gAtVtv~hs~--------------T~~L~~~~~~ADIVI~Avg~p~~-I~~------~~v-----k~G 226 (286)
T 4a5o_A 173 VGRPMALELLLGGCTVTVTHRF--------------TRDLADHVSRADLVVVAAGKPGL-VKG------EWI-----KEG 226 (286)
T ss_dssp THHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHHTCSEEEECCCCTTC-BCG------GGS-----CTT
T ss_pred hHHHHHHHHHHCCCeEEEEeCC--------------CcCHHHHhccCCEEEECCCCCCC-CCH------HHc-----CCC
Confidence 3677777777777777777642 24788899999999999995432 211 233 367
Q ss_pred eEEEEeCCC
Q 022170 81 QLLIDSSTI 89 (301)
Q Consensus 81 ~ivid~st~ 89 (301)
.+|||.+..
T Consensus 227 avVIDvgi~ 235 (286)
T 4a5o_A 227 AIVIDVGIN 235 (286)
T ss_dssp CEEEECCSC
T ss_pred eEEEEeccc
Confidence 899998753
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.015 Score=51.88 Aligned_cols=56 Identities=23% Similarity=0.353 Sum_probs=42.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC----CCC--CCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG----VPT--KETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g----~~~--~~s~~e~~~~adiVi~~vp~~ 57 (301)
||+.++..|.+ .++|.++||+.++.+++.+.. +.+ ..++.++++++|+||.|+|..
T Consensus 27 vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~ 88 (365)
T 3abi_A 27 IGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp HHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred HHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence 47888888865 589999999999988876542 111 234566788999999999954
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.033 Score=45.36 Aligned_cols=56 Identities=13% Similarity=0.016 Sum_probs=41.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-----CCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-----KETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-----~~s~~e~~~~adiVi~~vp~ 56 (301)
+|+.+++.|++.||+|++.+|++++.+.+...++.. .+...+++.++|+||-+...
T Consensus 12 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 12 AGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 489999999999999999999999887765444322 11111567789999988754
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.057 Score=45.98 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=42.6
Q ss_pred cHHHHHHHHhC--CCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 2 GFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 2 G~~lA~~L~~~--G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
|.++|..|.+. |..|++.+++. .++.+.+.+||+||.+++.+.- +. ..++ .+
T Consensus 171 G~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~~-----I~--~~~v-----k~ 224 (281)
T 2c2x_A 171 GRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGVAHL-----LT--ADMV-----RP 224 (281)
T ss_dssp HHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCCTTC-----BC--GGGS-----CT
T ss_pred HHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCCCcc-----cC--HHHc-----CC
Confidence 67777777777 66777776443 5788899999999999995432 21 1233 35
Q ss_pred CeEEEEeCC
Q 022170 80 PQLLIDSST 88 (301)
Q Consensus 80 ~~ivid~st 88 (301)
|.++||.+.
T Consensus 225 GavVIDVgi 233 (281)
T 2c2x_A 225 GAAVIDVGV 233 (281)
T ss_dssp TCEEEECCE
T ss_pred CcEEEEccC
Confidence 689999874
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.021 Score=49.31 Aligned_cols=92 Identities=14% Similarity=0.168 Sum_probs=61.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH-HHHHhCCCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~-~~l~~~g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||..+++++.+.|++ .+|..||.+. +.+ .|..+..|++++.+ .+|++++++|... +.+++.. .++.
T Consensus 25 ~G~~~~~~l~~~g~~-~V~~VnP~~~g~~i--~G~~vy~sl~el~~~~~~Dv~ii~vp~~~--~~~~v~e---a~~~--- 93 (294)
T 2yv1_A 25 QGSFHTKKMLECGTK-IVGGVTPGKGGQNV--HGVPVFDTVKEAVKETDANASVIFVPAPF--AKDAVFE---AIDA--- 93 (294)
T ss_dssp HHHHHHHHHHHTTCC-EEEEECTTCTTCEE--TTEEEESSHHHHHHHHCCCEEEECCCHHH--HHHHHHH---HHHT---
T ss_pred HHHHHHHHHHhCCCe-EEEEeCCCCCCceE--CCEeeeCCHHHHhhcCCCCEEEEccCHHH--HHHHHHH---HHHC---
Confidence 577889999999998 6666666643 222 47788899999988 8999999999543 5555543 2221
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
....+|+-+++.+....+++.+..++
T Consensus 94 Gi~~vVi~t~G~~~~~~~~l~~~A~~ 119 (294)
T 2yv1_A 94 GIELIVVITEHIPVHDTMEFVNYAED 119 (294)
T ss_dssp TCSEEEECCSCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 11124554556666666677666654
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.0097 Score=51.13 Aligned_cols=54 Identities=13% Similarity=0.012 Sum_probs=41.1
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCCCC--CCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPT--KETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~~--~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.+++..|.+.|. +|++++|++++.+.+.+. ... ..++.+ + ++|+||-|+|-.
T Consensus 133 aaraia~~L~~~G~~~v~v~nRt~~ka~~La~~-~~~~~~~~l~~-l-~~DivInaTp~G 189 (282)
T 3fbt_A 133 AARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGE-FKVISYDELSN-L-KGDVIINCTPKG 189 (282)
T ss_dssp THHHHHHHHHHTTCSEEEEEESCHHHHHHHCTT-SEEEEHHHHTT-C-CCSEEEECSSTT
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh-cCcccHHHHHh-c-cCCEEEECCccC
Confidence 57899999999998 899999999999888653 211 122223 4 799999999853
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=94.86 E-value=0.025 Score=51.94 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=43.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-C-C-----CCC--CCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-G-V-----PTK--ETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g-~-----~~~--~s~~e~~~~adiVi~~vp~~ 57 (301)
||.+++..|++.|++|++++|++++.+.+.+. + . ... .++.++++++|+|+.|+|..
T Consensus 14 iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~ 79 (450)
T 1ff9_A 14 VTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT 79 (450)
T ss_dssp THHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred HHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence 68999999999999999999999988777643 1 1 111 13446678999999999954
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.026 Score=46.13 Aligned_cols=55 Identities=7% Similarity=-0.048 Sum_probs=37.3
Q ss_pred CcHHHHHHHH-hCCCeEEEEcCChh-hHHHHHhCC--C-----CC--CCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLM-KAGYKMAVHDVNCN-VMKMFSDMG--V-----PT--KETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~-~~G~~V~~~dr~~~-~~~~l~~~g--~-----~~--~~s~~e~~~~adiVi~~vp 55 (301)
+|.++++.|+ +.||+|++.+|+++ +.+.+.+.+ + .. .+++.++++++|+||.+..
T Consensus 17 iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag 82 (221)
T 3r6d_A 17 IAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAM 82 (221)
T ss_dssp HHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCC
T ss_pred HHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCC
Confidence 4899999999 89999999999998 777664221 1 11 1233344556666666655
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.093 Score=46.81 Aligned_cols=82 Identities=12% Similarity=0.091 Sum_probs=56.6
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCC----hhhH--------HHHHhC--CCCCCCCHHHHHhcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVN----CNVM--------KMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~----~~~~--------~~l~~~--g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~ 65 (301)
+|.++|+.|...|. +|+++||+ .++. +.+.+. ......++.|+++++|++|-+.. +....++.+
T Consensus 203 AG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~Sa-p~l~t~emV 281 (388)
T 1vl6_A 203 AGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSR-GNILKPEWI 281 (388)
T ss_dssp HHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSC-SSCSCHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEEeCC-CCccCHHHH
Confidence 47889999999998 79999998 6552 233332 12235689999999999998876 432145555
Q ss_pred cCCCccccCCCCCCCeEEEEeCCCCHH
Q 022170 66 NGPNGLLQGGNSVRPQLLIDSSTIDPQ 92 (301)
Q Consensus 66 ~~~~~~l~~~~~~~~~ivid~st~~p~ 92 (301)
..+ .++++|+++|+-.|+
T Consensus 282 k~M---------a~~pIIfalSNPt~E 299 (388)
T 1vl6_A 282 KKM---------SRKPVIFALANPVPE 299 (388)
T ss_dssp TTS---------CSSCEEEECCSSSCS
T ss_pred Hhc---------CCCCEEEEcCCCCCC
Confidence 432 235699999986654
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.033 Score=48.70 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=42.2
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHH----HHHhC------CCCCC-CCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMK----MFSDM------GVPTK-ETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~----~l~~~------g~~~~-~s~~e~~~~adiVi~~vp~~ 57 (301)
||.++|..|+..|+ +|.+||+++++++ .+... ..... ++..+++++||+||++.+.+
T Consensus 16 vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~p 84 (321)
T 3p7m_A 16 IGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGVP 84 (321)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCcC
Confidence 68999999999998 9999999998764 23221 23332 23357889999999998754
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.029 Score=48.93 Aligned_cols=57 Identities=5% Similarity=-0.030 Sum_probs=42.3
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCC---hhhHHHHHhC-----CC--CC--CCC---HHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVN---CNVMKMFSDM-----GV--PT--KET---PFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~---~~~~~~l~~~-----g~--~~--~~s---~~e~~~~adiVi~~vp~~ 57 (301)
+|.+++..|++.|. +|++++|+ .++++++.+. +. .. .++ +.+.+.++|+||-|+|-.
T Consensus 165 ~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaTp~G 237 (315)
T 3tnl_A 165 AATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVG 237 (315)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSSTT
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECccCC
Confidence 47889999999998 89999999 8887776542 21 11 122 456677999999999843
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.028 Score=51.54 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=41.4
Q ss_pred cHHHHHHHHhC-----CCeEEEEcCCh--hhHHHHH--------hCC----CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLMKA-----GYKMAVHDVNC--NVMKMFS--------DMG----VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~~~-----G~~V~~~dr~~--~~~~~l~--------~~g----~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
|.+++..|+++ +++|.+||+++ ++++... ..+ +..++++.+++++||+|++++|.+
T Consensus 20 ~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~VVitagv~ 94 (450)
T 1s6y_A 20 TPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRVG 94 (450)
T ss_dssp HHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEEECCCTT
T ss_pred HHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCEEEEcCCCC
Confidence 56777778874 67899999999 7765421 112 233468889999999999999964
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=94.39 E-value=0.03 Score=48.18 Aligned_cols=93 Identities=18% Similarity=0.182 Sum_probs=59.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||..+++++.+.|++ .+|..+|.+... ...|..+..|++++.+ .+|++++++|.. . +.+++.. ..+. .
T Consensus 19 ~G~~~~~~l~~~g~~-~v~~VnP~~~g~-~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~-~-~~~~~~e---a~~~---G 88 (288)
T 1oi7_A 19 EGQFHTKQMLTYGTK-IVAGVTPGKGGM-EVLGVPVYDTVKEAVAHHEVDASIIFVPAP-A-AADAALE---AAHA---G 88 (288)
T ss_dssp HHHHHHHHHHHHTCE-EEEEECTTCTTC-EETTEEEESSHHHHHHHSCCSEEEECCCHH-H-HHHHHHH---HHHT---T
T ss_pred HHHHHHHHHHHcCCe-EEEEECCCCCCc-eECCEEeeCCHHHHhhcCCCCEEEEecCHH-H-HHHHHHH---HHHC---C
Confidence 578899999988998 445555543110 1247788889999988 899999999954 3 5666543 2221 1
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 79 RPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
-+.+|+-+++......+++.+..++
T Consensus 89 i~~vVi~t~G~~~~~~~~l~~~a~~ 113 (288)
T 1oi7_A 89 IPLIVLITEGIPTLDMVRAVEEIKA 113 (288)
T ss_dssp CSEEEECCSCCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Confidence 1225554556666656666666554
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.041 Score=47.59 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=60.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH-HHHHhCCCCCCCCHHHHHh--c-CCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTKETPFEVAE--A-SDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~-~~l~~~g~~~~~s~~e~~~--~-adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
||..++++|.+.|++ .+|..||.+. +.. .|..+..|++++.+ . +|++++++|.+. +.+++.. ..+.
T Consensus 25 ~G~~~~~~l~~~g~~-~v~~VnP~~~g~~i--~G~~vy~sl~el~~~~~~~DvaIi~vp~~~--~~~~v~e---a~~~-- 94 (297)
T 2yv2_A 25 EGSFHAKAMLEYGTK-VVAGVTPGKGGSEV--HGVPVYDSVKEALAEHPEINTSIVFVPAPF--APDAVYE---AVDA-- 94 (297)
T ss_dssp HHHHHHHHHHHHTCE-EEEEECTTCTTCEE--TTEEEESSHHHHHHHCTTCCEEEECCCGGG--HHHHHHH---HHHT--
T ss_pred HHHHHHHHHHhCCCc-EEEEeCCCCCCceE--CCEeeeCCHHHHhhcCCCCCEEEEecCHHH--HHHHHHH---HHHC--
Confidence 577888999989998 5566666542 121 47888899999887 5 999999999544 5665543 2221
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 77 SVRPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 77 ~~~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.-..+|+-+++......+++.+..++
T Consensus 95 -Gi~~vVi~t~G~~~~~~~~l~~~A~~ 120 (297)
T 2yv2_A 95 -GIRLVVVITEGIPVHDTMRFVNYARQ 120 (297)
T ss_dssp -TCSEEEECCCCCCHHHHHHHHHHHHH
T ss_pred -CCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 11125554556666666666666554
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.032 Score=48.65 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=40.1
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCC--hhhHHHH----Hh------CCCCCC-CCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVN--CNVMKMF----SD------MGVPTK-ETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~--~~~~~~l----~~------~g~~~~-~s~~e~~~~adiVi~~vp~~ 57 (301)
||.++|..|+.+|+ +|.+||++ +++.+.. .. ...... ++..+++++||+||++.+.+
T Consensus 19 vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaag~p 89 (315)
T 3tl2_A 19 TGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITAGIA 89 (315)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeCCCC
Confidence 68999999999999 99999999 4444321 11 122222 22356789999999998654
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.083 Score=46.80 Aligned_cols=88 Identities=16% Similarity=0.234 Sum_probs=58.4
Q ss_pred HHHHHHhC-CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 5 MASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 5 lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
.+..|.+. +++|. ++|+++++..+ +. +...+++++++++ +.|+|++|+|+... ...+.. .++. +
T Consensus 21 ~~~~l~~~~~~~l~av~d~~~~~~~~--~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H-~~~~~~----al~a----G 89 (358)
T 3gdo_A 21 HGPLLDVLDEYQISKIMTSRTEEVKR--DFPDAEVVHELEEITNDPAIELVIVTTPSGLH-YEHTMA----CIQA----G 89 (358)
T ss_dssp THHHHTTCTTEEEEEEECSCHHHHHH--HCTTSEEESSTHHHHTCTTCCEEEECSCTTTH-HHHHHH----HHHT----T
T ss_pred HHHHHhhCCCeEEEEEEcCCHHHHHh--hCCCCceECCHHHHhcCCCCCEEEEcCCcHHH-HHHHHH----HHHc----C
Confidence 34555544 66764 78999987432 23 5677889999987 78999999998764 333321 2321 2
Q ss_pred CeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 80 PQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 80 ~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
..++++.- +.+++.++++.+..++
T Consensus 90 khVl~EKPla~~~~e~~~l~~~a~~ 114 (358)
T 3gdo_A 90 KHVVMEKPMTATAEEGETLKRAADE 114 (358)
T ss_dssp CEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred CeEEEecCCcCCHHHHHHHHHHHHH
Confidence 34666543 6788888888887765
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.023 Score=49.66 Aligned_cols=88 Identities=11% Similarity=0.097 Sum_probs=55.2
Q ss_pred CcHHHHHHHHhC-CCeE-EEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V-~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||+.++..|.+. +.++ .++|+++++ .+. .|+..++++++++.++|+|++|+|+... ...+.. .++
T Consensus 14 mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h-~~~~~~----al~----- 80 (320)
T 1f06_A 14 LGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-TPVFDVADVDKHADDVDVLFLCMGSATD-IPEQAP----KFA----- 80 (320)
T ss_dssp HHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-SCEEEGGGGGGTTTTCSEEEECSCTTTH-HHHHHH----HHT-----
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-CCCceeCCHHHHhcCCCEEEEcCCcHHH-HHHHHH----HHH-----
Confidence 688899988876 4664 578998665 222 4555566777777789999999997644 444432 222
Q ss_pred CCeEEEEeCCC--CHHHH-HHHHHHH
Q 022170 79 RPQLLIDSSTI--DPQTS-RNISAAV 101 (301)
Q Consensus 79 ~~~ivid~st~--~p~~~-~~~~~~~ 101 (301)
.|+.+++.+.. +.... +++.+..
T Consensus 81 aG~~Vv~ekp~~~~~~~~~~~l~~~a 106 (320)
T 1f06_A 81 QFACTVDTYDNHRDIPRHRQVMNEAA 106 (320)
T ss_dssp TTSEEECCCCCGGGHHHHHHHHHHHH
T ss_pred CCCEEEECCCCcCCHHHHHHHHHHHH
Confidence 34556655543 23333 4555544
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.084 Score=46.80 Aligned_cols=91 Identities=12% Similarity=0.165 Sum_probs=60.1
Q ss_pred cHH-HHHHHHhC-CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHHhc--CCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 2 GFR-MASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEA--SDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 2 G~~-lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~--adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
|.. .+..|.+. +++|. ++|+++++.. .+. +....+|+++++++ .|+|++|+|+... ...+.. .++
T Consensus 17 g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H-~~~~~~----al~-- 87 (362)
T 3fhl_A 17 GQVFHAPFISTNPHFELYKIVERSKELSK--ERYPQASIVRSFKELTEDPEIDLIVVNTPDNTH-YEYAGM----ALE-- 87 (362)
T ss_dssp HHHTTHHHHHHCTTEEEEEEECSSCCGGG--TTCTTSEEESCSHHHHTCTTCCEEEECSCGGGH-HHHHHH----HHH--
T ss_pred HHHHHHHHHhhCCCeEEEEEEcCCHHHHH--HhCCCCceECCHHHHhcCCCCCEEEEeCChHHH-HHHHHH----HHH--
Confidence 443 45556554 67765 7899988743 222 56678899999876 8999999997654 333321 232
Q ss_pred CCCCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 76 NSVRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 76 ~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
.+..++++.- +.+++.++++.+..++
T Consensus 88 --aGkhVl~EKP~a~~~~ea~~l~~~a~~ 114 (362)
T 3fhl_A 88 --AGKNVVVEKPFTSTTKQGEELIALAKK 114 (362)
T ss_dssp --TTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred --CCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 1235666654 6788888888887765
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.016 Score=53.39 Aligned_cols=58 Identities=16% Similarity=0.318 Sum_probs=44.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCC-------CCCCHHHH-HhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVP-------TKETPFEV-AEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~-------~~~s~~e~-~~~adiVi~~vp~~~ 58 (301)
+|..+|+.|.+.||+|++.|+++++++.+.+. ++. -.+.+.++ +++||+++.+++++.
T Consensus 14 vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~De 80 (461)
T 4g65_A 14 VGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDE 80 (461)
T ss_dssp HHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCChH
Confidence 48899999999999999999999999888753 322 11234555 578999998888764
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.1 Score=47.55 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=41.1
Q ss_pred CcHHHHHHHHhC-CCeE-EEEcCChhhHHHHHhC--C----------------------CCCCCCHHHHHh--cCCEEEE
Q 022170 1 MGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSDM--G----------------------VPTKETPFEVAE--ASDVVIT 52 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V-~~~dr~~~~~~~l~~~--g----------------------~~~~~s~~e~~~--~adiVi~ 52 (301)
||+.++..+.+. +.+| .++||++++++.+.+. | ...+++.+++++ +.|+|++
T Consensus 34 iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL~d~dIDaVvi 113 (446)
T 3upl_A 34 MGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLILSNPLIDVIID 113 (446)
T ss_dssp HHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHHTCTTCCEEEE
T ss_pred HHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHhcCCCCCEEEE
Confidence 567777776653 4554 4679999998776532 3 335678999886 5899999
Q ss_pred ecCCC
Q 022170 53 MLPSS 57 (301)
Q Consensus 53 ~vp~~ 57 (301)
|+|++
T Consensus 114 aTp~p 118 (446)
T 3upl_A 114 ATGIP 118 (446)
T ss_dssp CSCCH
T ss_pred cCCCh
Confidence 99865
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.03 Score=48.87 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=41.3
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHH----HhC------CCCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM------GVPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l----~~~------g~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||.++|..|+..|. +|.++|+++++.+.. ... ..+...+..+++++||+||++.|.+.
T Consensus 17 vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~~ 86 (316)
T 1ldn_A 17 VGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQ 86 (316)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCCC
Confidence 68999999988775 899999998765432 211 11122345677899999999998654
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.094 Score=44.68 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=55.4
Q ss_pred CcHHHHHHHHhC-CCeEEE-EcCChhhH-----HHHH--hCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcc
Q 022170 1 MGFRMASNLMKA-GYKMAV-HDVNCNVM-----KMFS--DMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGL 71 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~~-~dr~~~~~-----~~l~--~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~ 71 (301)
||+.+++.+.+. ++++.. +||+++.. ..+. ..|+...++++++++++|+||-+.+ +.. ..+.+.. .
T Consensus 19 MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~-p~a-~~~~~~~---a 93 (272)
T 4f3y_A 19 MGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL-PEG-TLVHLDA---A 93 (272)
T ss_dssp HHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC-HHH-HHHHHHH---H
T ss_pred HHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC-HHH-HHHHHHH---H
Confidence 788999888765 567664 79875421 1111 1256678899999999999999987 443 4444421 2
Q ss_pred ccCCCCCCCeEEEEeCCCCHHHHHHHHHH
Q 022170 72 LQGGNSVRPQLLIDSSTIDPQTSRNISAA 100 (301)
Q Consensus 72 l~~~~~~~~~ivid~st~~p~~~~~~~~~ 100 (301)
++. +-.+|+-+++.+++...++.+.
T Consensus 94 l~~----G~~vVigTTG~s~~~~~~L~~a 118 (272)
T 4f3y_A 94 LRH----DVKLVIGTTGFSEPQKAQLRAA 118 (272)
T ss_dssp HHH----TCEEEECCCCCCHHHHHHHHHH
T ss_pred HHc----CCCEEEECCCCCHHHHHHHHHH
Confidence 321 2245554555566655555444
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.21 Score=43.40 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=61.9
Q ss_pred CcHHHHHHHHhCCCeEE-EEcCChhhHHHHHhC--CCCCCCCHHHHH-----------hcCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKAGYKMA-VHDVNCNVMKMFSDM--GVPTKETPFEVA-----------EASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~-~~dr~~~~~~~l~~~--g~~~~~s~~e~~-----------~~adiVi~~vp~~~~~~~~v~~ 66 (301)
||...+..|.+.|.++. ++|+++++. .+.+. +....++.++.+ .+.|+|++|+|+... ..-+..
T Consensus 15 i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~~~H-~~~~~~ 92 (318)
T 3oa2_A 15 IAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPNYLH-YPHIAA 92 (318)
T ss_dssp SHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCGGGH-HHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCcHHH-HHHHHH
Confidence 46677888888887754 679998874 33332 456678898886 468999999997654 332221
Q ss_pred CCCccccCCCCCCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 67 GPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 67 ~~~~~l~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
.+.. +..++++-- +.+++.++++.+..++
T Consensus 93 ----al~a----GkhVl~EKPla~~~~ea~~l~~~a~~ 122 (318)
T 3oa2_A 93 ----GLRL----GCDVICEKPLVPTPEMLDQLAVIERE 122 (318)
T ss_dssp ----HHHT----TCEEEECSSCCSCHHHHHHHHHHHHH
T ss_pred ----HHHC----CCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 2221 224555543 5788888888887765
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=93.84 E-value=0.018 Score=47.76 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=42.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCCH---HHH-HhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETP---FEV-AEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~----~~s~---~e~-~~~adiVi~~vp~~~ 58 (301)
+|..+++.|.+.|+ |+++++++++++.+. .|..+ .++. .++ +.++|.||++++++.
T Consensus 20 ~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~ 83 (234)
T 2aef_A 20 STLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS 83 (234)
T ss_dssp HHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHH
T ss_pred HHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcH
Confidence 37889999999999 999999999988777 55332 1222 233 568999999999764
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.039 Score=48.08 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=42.3
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHH----HHHh------CCCCCC-CCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSD------MGVPTK-ETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~----~l~~------~g~~~~-~s~~e~~~~adiVi~~vp~~ 57 (301)
||.++|..|+.+|+ +|.++|+++++++ .+.. ...... ++..+++++||+||++.+.+
T Consensus 11 vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~ 80 (314)
T 3nep_X 11 VGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP 80 (314)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence 68999999999887 8999999998764 2222 122332 35567889999999998765
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.074 Score=46.93 Aligned_cols=57 Identities=9% Similarity=0.026 Sum_probs=42.3
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhHHH----HHhC-----CCCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKM----FSDM-----GVPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~~~----l~~~-----g~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.++|..++..| ++|.++|+++++++. +... .+..++++.+++++||+||++...+
T Consensus 20 VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG~p 87 (343)
T 3fi9_A 20 IGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGGAP 87 (343)
T ss_dssp HHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC--
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccCCC
Confidence 4788999999888 589999999887653 3331 2333467888999999999997644
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.022 Score=47.22 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=39.7
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHHhCCC-------CCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGV-------PTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~g~-------~~~~s~~e~~~~adiVi~~vp~ 56 (301)
+|..+++.|++.| ++|++.+|++++.+.+...++ .-.+++.++++++|+||.+...
T Consensus 35 iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~ 98 (236)
T 3qvo_A 35 IARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTG 98 (236)
T ss_dssp HHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred HHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence 4899999999999 999999999987655433221 1112344566778888877764
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.019 Score=49.01 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=42.4
Q ss_pred CcHHHHHHHHhC-CCeEEEEcCChhhHHHHHhCCCCC-------CCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adiVi~~vp~ 56 (301)
+|+.++..|.+. |++|.+.+|++++...+...++.. .+++.++++++|+||.+.+.
T Consensus 12 iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 12 LGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp HHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred HHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 488999999988 999999999998877665444321 22455677889999988764
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.3 Score=41.97 Aligned_cols=62 Identities=13% Similarity=0.239 Sum_probs=41.0
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.+||..|.+.|..|+++.. .+.++.+.+++||+|+.++.-+.- +.. .++ .+|.
T Consensus 192 GkPla~LL~~~~ATVTi~Hs--------------~T~dl~~~~~~ADIvV~A~G~p~~-i~~------d~v-----k~Ga 245 (303)
T 4b4u_A 192 GKPMAMMLLQANATVTICHS--------------RTQNLPELVKQADIIVGAVGKAEL-IQK------DWI-----KQGA 245 (303)
T ss_dssp HHHHHHHHHHTTCEEEEECT--------------TCSSHHHHHHTCSEEEECSCSTTC-BCG------GGS-----CTTC
T ss_pred cchHHHHHHhcCCEEEEecC--------------CCCCHHHHhhcCCeEEeccCCCCc-ccc------ccc-----cCCC
Confidence 56666666666666665532 234778889999999999985442 221 233 3678
Q ss_pred EEEEeCCC
Q 022170 82 LLIDSSTI 89 (301)
Q Consensus 82 ivid~st~ 89 (301)
+|||.+..
T Consensus 246 vVIDVGin 253 (303)
T 4b4u_A 246 VVVDAGFH 253 (303)
T ss_dssp EEEECCCB
T ss_pred EEEEecee
Confidence 99998753
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=0.07 Score=46.43 Aligned_cols=57 Identities=7% Similarity=0.084 Sum_probs=42.1
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCC---hhhHHHHHhC-----CCC--C--CCCH---HHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVN---CNVMKMFSDM-----GVP--T--KETP---FEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~---~~~~~~l~~~-----g~~--~--~~s~---~e~~~~adiVi~~vp~~ 57 (301)
+|.+++..|.+.|. +|++++|+ .++++++.+. +.. . ..++ .+.+.++|+||-|+|-.
T Consensus 159 aaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIINaTp~G 231 (312)
T 3t4e_A 159 AATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVG 231 (312)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEEECSSTT
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEEEECCcCC
Confidence 46789999999998 89999999 7777776542 221 1 2233 55678899999999954
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=93.40 E-value=0.036 Score=48.10 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=37.8
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhh---HHHHHhC---CCCCCCCHHHHHhcCCEEEEec
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNV---MKMFSDM---GVPTKETPFEVAEASDVVITML 54 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~---~~~l~~~---g~~~~~s~~e~~~~adiVi~~v 54 (301)
||.++|..|+..|+ +|.++|++++. ...+... .++.+.++ +++++||+||++.
T Consensus 25 vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aa 85 (303)
T 2i6t_A 25 LGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTV 85 (303)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECC
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcC
Confidence 68899999999999 99999999852 2222221 23444676 7789999999997
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.041 Score=44.01 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=35.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------CCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-------~~~s~~e~~~~adiVi~~vp 55 (301)
+|..+++.|.+.||+|++.+|++++.+.+...++. -.+++.++++++|+||.+..
T Consensus 15 iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 15 TGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 48899999999999999999998765433112211 11133345556677666654
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.28 Score=42.47 Aligned_cols=93 Identities=14% Similarity=0.128 Sum_probs=61.3
Q ss_pred CcHHHHHHHHhCCCeEE-EEcCChhhHHHHHhC--CCCCCCCHHHHH----------hcCCEEEEecCCCccchhhhhcC
Q 022170 1 MGFRMASNLMKAGYKMA-VHDVNCNVMKMFSDM--GVPTKETPFEVA----------EASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~-~~dr~~~~~~~l~~~--g~~~~~s~~e~~----------~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
||...+..|.+.+.+|. ++|+++++. .+.+. +....++.++.+ .+.|+|++|+|+... ..-+..
T Consensus 15 i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~~H-~~~~~~- 91 (312)
T 3o9z_A 15 IAPRHLKAIKEVGGVLVASLDPATNVG-LVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNHLH-YPQIRM- 91 (312)
T ss_dssp SHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGGGH-HHHHHH-
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCchhh-HHHHHH-
Confidence 45667788888887754 789998874 33332 456678898887 469999999997654 222221
Q ss_pred CCccccCCCCCCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 68 PNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 68 ~~~~l~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
.++. +..++++-- +.++..++++.+..++
T Consensus 92 ---al~a----GkhVl~EKPla~~~~ea~~l~~~a~~ 121 (312)
T 3o9z_A 92 ---ALRL----GANALSEKPLVLWPEEIARLKELEAR 121 (312)
T ss_dssp ---HHHT----TCEEEECSSSCSCHHHHHHHHHHHHH
T ss_pred ---HHHC----CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 2321 224555432 5678888888887765
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=93.31 E-value=0.014 Score=50.13 Aligned_cols=82 Identities=9% Similarity=-0.065 Sum_probs=51.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CC----C-----CCCCHHHHHhcCCEEEEecCCCccch--hhhhcCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GV----P-----TKETPFEVAEASDVVITMLPSSSHQV--LDVYNGP 68 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~----~-----~~~s~~e~~~~adiVi~~vp~~~~~~--~~v~~~~ 68 (301)
||.++|..|++.| +|++++|++++.+.+.+. +. . ...++.+....+|+||.|+|.... - .......
T Consensus 139 iG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~~~~-~~~~~~~~~~ 216 (287)
T 1nvt_A 139 AARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMY-PNIDVEPIVK 216 (287)
T ss_dssp HHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCT-TCCSSCCSSC
T ss_pred HHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCCCCC-CCCCCCCCCC
Confidence 5889999999999 999999999887776532 00 0 011223455789999999985431 1 0010000
Q ss_pred CccccCCCCCCCeEEEEeCCC
Q 022170 69 NGLLQGGNSVRPQLLIDSSTI 89 (301)
Q Consensus 69 ~~~l~~~~~~~~~ivid~st~ 89 (301)
... ..++.+++|++..
T Consensus 217 ~~~-----l~~~~~v~Dv~y~ 232 (287)
T 1nvt_A 217 AEK-----LREDMVVMDLIYN 232 (287)
T ss_dssp STT-----CCSSSEEEECCCS
T ss_pred HHH-----cCCCCEEEEeeeC
Confidence 111 2356799999874
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.048 Score=47.77 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=42.8
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHH----HHhC-----CCCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM-----GVPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~----l~~~-----g~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
||.++|..|+..|+ +|.++|+++++++. +... .....++..+++++||+||++...+
T Consensus 20 vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~~ 87 (326)
T 3vku_A 20 VGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGAP 87 (326)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCCC
Confidence 58999999999887 89999999987752 2221 2233445567889999999997754
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.063 Score=46.56 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=60.4
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHH-HHHhCCCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMK-MFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~-~l~~~g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
|..++++|.+.|++ .+|+.||.+.. . -.|..+..|++|+.+ ..|++++++|... ..+++.. ..+. .
T Consensus 27 G~~~~~~l~~~G~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~vD~avI~vP~~~--~~~~~~e---~i~~--G- 95 (305)
T 2fp4_A 27 GTFHSQQALEYGTN-LVGGTTPGKGGKT--HLGLPVFNTVKEAKEQTGATASVIYVPPPF--AAAAINE---AIDA--E- 95 (305)
T ss_dssp HHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCHHH--HHHHHHH---HHHT--T-
T ss_pred HHHHHHHHHHCCCc-EEEEeCCCcCcce--ECCeeeechHHHhhhcCCCCEEEEecCHHH--HHHHHHH---HHHC--C-
Confidence 67788999999999 55666776421 2 247788889999988 8999999999543 5666543 2221 1
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhh
Q 022170 79 RPQLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 79 ~~~ivid~st~~p~~~~~~~~~~~~ 103 (301)
-+.+++-..++..+..+++.+..++
T Consensus 96 i~~iv~~t~G~~~~~~~~l~~~a~~ 120 (305)
T 2fp4_A 96 VPLVVCITEGIPQQDMVRVKHRLLR 120 (305)
T ss_dssp CSEEEECCCCCCHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHHHHh
Confidence 1234554556666655566666654
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.19 Score=43.01 Aligned_cols=92 Identities=11% Similarity=0.118 Sum_probs=55.6
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhh-----HHHHH---hCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCc
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNV-----MKMFS---DMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~-----~~~l~---~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
||+.+++.+.+. ++++. ++||++.. +..+. ..|+.+++++++++..+|+||-+.+ +.. ..+.+. .
T Consensus 33 MGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~-p~a-~~~~~~---~ 107 (288)
T 3ijp_A 33 MGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ-PQA-SVLYAN---Y 107 (288)
T ss_dssp HHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC-HHH-HHHHHH---H
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC-HHH-HHHHHH---H
Confidence 788888887754 67755 56887532 12222 2467788899999999999998776 333 333332 1
Q ss_pred cccCCCCCCCeEEEEeCCCCHHHHHHHHHHH
Q 022170 71 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 101 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~p~~~~~~~~~~ 101 (301)
.++. +-.+|+-+++.+++...++.+..
T Consensus 108 ~l~~----Gv~vViGTTG~~~e~~~~L~~aa 134 (288)
T 3ijp_A 108 AAQK----SLIHIIGTTGFSKTEEAQIADFA 134 (288)
T ss_dssp HHHH----TCEEEECCCCCCHHHHHHHHHHH
T ss_pred HHHc----CCCEEEECCCCCHHHHHHHHHHh
Confidence 2321 22455555556666555555544
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.23 Score=44.20 Aligned_cols=78 Identities=0% Similarity=-0.008 Sum_probs=53.3
Q ss_pred EEEcCChhhHHHHHh-CCC-CCCCCHHHHHhc--CCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEe-CCCCH
Q 022170 17 AVHDVNCNVMKMFSD-MGV-PTKETPFEVAEA--SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDP 91 (301)
Q Consensus 17 ~~~dr~~~~~~~l~~-~g~-~~~~s~~e~~~~--adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~-st~~p 91 (301)
.++||++++.+.+.+ .|+ ..++|+++++++ .|+|++|+|+... ..-+.. .++. +..++++- -+.+.
T Consensus 50 av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~i~tp~~~h-~~~~~~----al~~----Gk~V~~EKP~a~~~ 120 (383)
T 3oqb_A 50 ILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTMFFDAATTQAR-PGLLTQ----AINA----GKHVYCEKPIATNF 120 (383)
T ss_dssp EEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCEEEECSCSSSS-HHHHHH----HHTT----TCEEEECSCSCSSH
T ss_pred EEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEECCCchHH-HHHHHH----HHHC----CCeEEEcCCCCCCH
Confidence 389999999988765 476 467899999875 8999999997654 332221 2321 22344432 15678
Q ss_pred HHHHHHHHHHhh
Q 022170 92 QTSRNISAAVSN 103 (301)
Q Consensus 92 ~~~~~~~~~~~~ 103 (301)
+..+++.+..++
T Consensus 121 ~~~~~l~~~a~~ 132 (383)
T 3oqb_A 121 EEALEVVKLANS 132 (383)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887765
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.29 Score=44.65 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=53.9
Q ss_pred HHHHHHHHhCCCeEEEEcCCh-hhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 3 FRMASNLMKAGYKMAVHDVNC-NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~-~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
..++..|.+.|.+|.+||.-. +.........+..+.++.++++++|.|++++.+++ .+.+ ..+++
T Consensus 356 ~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~~~aDavvi~t~h~e--f~~l------------d~~~~ 421 (444)
T 3vtf_A 356 VEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLDQVEGVIIATAWPQ--YEGL------------DYRGK 421 (444)
T ss_dssp HHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHHHHCSEEEECSCCGG--GGGS------------CCTTC
T ss_pred HHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHHhCCCEEEEccCCHH--HhCC------------CcCCC
Confidence 457889999999999999643 22223333346678899999999999999999765 4432 12357
Q ss_pred EEEEeCCCC
Q 022170 82 LLIDSSTID 90 (301)
Q Consensus 82 ivid~st~~ 90 (301)
+|+|.-++.
T Consensus 422 vv~D~Rni~ 430 (444)
T 3vtf_A 422 VVVDGRYVK 430 (444)
T ss_dssp EEEESSCCG
T ss_pred EEEECCCCC
Confidence 999987764
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=93.11 E-value=0.032 Score=48.91 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=41.6
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHH----HhC-------CCCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM-------GVPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l----~~~-------g~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
||.++|..|+.+|+ +|.++|+++++++.. ... .+..++++++ +++||+||++...+
T Consensus 32 vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG~p 100 (330)
T 3ldh_A 32 VGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAGAR 100 (330)
T ss_dssp HHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCCCC
Confidence 68999999999997 899999999876532 211 1223456655 89999999997654
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.08 E-value=0.063 Score=46.88 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=37.7
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHH----HHhC-----CCCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM-----GVPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~----l~~~-----g~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
+|.+++..|+..|+ +|.++|+++++++. +.+. ..+...+..+++++||+||++++.+.
T Consensus 18 vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~ 86 (318)
T 1y6j_A 18 VGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR 86 (318)
T ss_dssp HHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence 48899999999998 89999999876542 2221 11122234667899999999998764
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.047 Score=44.57 Aligned_cols=55 Identities=16% Similarity=0.304 Sum_probs=38.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC------CCCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM------GVPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~------g~~~~~s~~e~~~~adiVi~~vp 55 (301)
+|+.++..|++.||+|++.+|++++.+.+... .+.-..++.++++++|+||-+..
T Consensus 16 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~ 76 (227)
T 3dhn_A 16 VGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFN 76 (227)
T ss_dssp HHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence 48899999999999999999998876443211 11112234456677888887765
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=92.97 E-value=0.12 Score=45.27 Aligned_cols=57 Identities=14% Similarity=0.058 Sum_probs=41.2
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhh--HHHHHhCCCC--C-----CCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNV--MKMFSDMGVP--T-----KETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~--~~~l~~~g~~--~-----~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.+++..|+..| ++|.++|++++. ...+...... . ++++.++++++|+||++.+.+
T Consensus 20 VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~~ 87 (326)
T 1smk_A 20 IGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP 87 (326)
T ss_dssp THHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCcC
Confidence 5889999999999 899999988762 2234432211 1 235678899999999998754
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.2 Score=43.94 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=57.9
Q ss_pred HHHHHhC-CCeEE-EEcCChhhHHHHHhC-CC-CCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 6 ASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GV-PTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 6 A~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
+..+.+. +.+|. ++|+++++++++.+. |+ ...+|.+++++ +.|+|++|+|+... ..-+.. .++. +
T Consensus 40 ~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H-~~~~~~----al~a----G 110 (350)
T 4had_A 40 VPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQH-IEWSIK----AADA----G 110 (350)
T ss_dssp HHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGH-HHHHHH----HHHT----T
T ss_pred HHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchh-HHHHHH----HHhc----C
Confidence 4445554 56765 789999999888764 65 46789999986 47999999997754 332221 2221 2
Q ss_pred CeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 80 PQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 80 ~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
..++++-- +.+.++++++.+..++
T Consensus 111 khVl~EKPla~~~~ea~~l~~~a~~ 135 (350)
T 4had_A 111 KHVVCEKPLALKAGDIDAVIAARDR 135 (350)
T ss_dssp CEEEECSCCCSSGGGGHHHHHHHHH
T ss_pred CEEEEeCCcccchhhHHHHHHHHHH
Confidence 23555432 4566777888777654
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=92.79 E-value=0.1 Score=45.94 Aligned_cols=87 Identities=10% Similarity=0.121 Sum_probs=55.6
Q ss_pred HHHHHhC-CCeEE-EEcCChhhHHHHHh----CCCCCCCCHHHHHhc--CCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 6 ASNLMKA-GYKMA-VHDVNCNVMKMFSD----MGVPTKETPFEVAEA--SDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 6 A~~L~~~-G~~V~-~~dr~~~~~~~l~~----~g~~~~~s~~e~~~~--adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
+..+.+. +++|. ++|++ +.+.+.+ .++...+|+++++++ .|+|++|+|+... ...+.. .++.
T Consensus 19 ~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h-~~~~~~----al~a--- 88 (349)
T 3i23_A 19 LPYVMIRETLEVKTIFDLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTH-YDLAKQ----AILA--- 88 (349)
T ss_dssp HHHHTTCTTEEEEEEECTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGH-HHHHHH----HHHT---
T ss_pred HHHHhhCCCeEEEEEECCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHH-HHHHHH----HHHc---
Confidence 3444443 56765 78988 3334432 367778899999875 8999999997654 333221 2321
Q ss_pred CCCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 78 VRPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 78 ~~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
+..++++.- +.+++.++++.+...+
T Consensus 89 -Gk~Vl~EKP~a~~~~e~~~l~~~a~~ 114 (349)
T 3i23_A 89 -GKSVIVEKPFCDTLEHAEELFALGQE 114 (349)
T ss_dssp -TCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred -CCEEEEECCCcCCHHHHHHHHHHHHH
Confidence 234666543 5678888888887765
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.064 Score=39.81 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=43.7
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
|..+.++|.+.||+|+-.|...+.+ .|.+...|+.++-. .|++++++|. .. +.+++.+
T Consensus 20 g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~p~-~~-v~~~v~e 77 (122)
T 3ff4_A 20 AYLAAERLKSHGHEFIPVGRKKGEV-----LGKTIINERPVIEG-VDTVTLYINP-QN-QLSEYNY 77 (122)
T ss_dssp HHHHHHHHHHHTCCEEEESSSCSEE-----TTEECBCSCCCCTT-CCEEEECSCH-HH-HGGGHHH
T ss_pred HHHHHHHHHHCCCeEEEECCCCCcC-----CCeeccCChHHCCC-CCEEEEEeCH-HH-HHHHHHH
Confidence 5678899999999988888654433 36677778887767 9999999994 44 6666654
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=92.33 E-value=0.085 Score=45.81 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=41.6
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHH----Hh------CCCCC--CCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMF----SD------MGVPT--KETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l----~~------~g~~~--~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||.++|..|+..|+ +|.++|+++++++.. .. ...+. +.+. +++++||+||++.+.+.
T Consensus 10 vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~ 79 (308)
T 2d4a_B 10 VGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR 79 (308)
T ss_dssp HHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred HHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence 68999999998888 699999998876432 11 12222 2455 67899999999977553
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.28 Score=44.82 Aligned_cols=81 Identities=17% Similarity=0.235 Sum_probs=55.1
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHH-h-CCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNVMKMFS-D-MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~-~-~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
..++..|.+.|.+|.+||..-.. ... . .++..+.++.++++++|+|++++.+++ .+++=. +.+.+. .+.
T Consensus 345 ~~i~~~L~~~g~~v~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~--f~~~d~--~~~~~~---~~~ 415 (446)
T 4a7p_A 345 LSIIAALQDAGATVKAYDPEGVE--QASKMLTDVEFVENPYAAADGADALVIVTEWDA--FRALDL--TRIKNS---LKS 415 (446)
T ss_dssp HHHHHHHHHTSCEEEEECSSCHH--HHGGGCSSCCBCSCHHHHHTTBSEEEECSCCTT--TTSCCH--HHHHTT---BSS
T ss_pred HHHHHHHHHCCCEEEEECCCCCH--hHHHhcCCceEecChhHHhcCCCEEEEeeCCHH--hhcCCH--HHHHHh---cCC
Confidence 46788999999999999975431 221 1 267778899999999999999999865 333210 011111 123
Q ss_pred eEEEEeCCCCHH
Q 022170 81 QLLIDSSTIDPQ 92 (301)
Q Consensus 81 ~ivid~st~~p~ 92 (301)
++|+|.-++...
T Consensus 416 ~~i~D~r~~~~~ 427 (446)
T 4a7p_A 416 PVLVDLRNIYPP 427 (446)
T ss_dssp CBEECSSCCSCH
T ss_pred CEEEECCCCCCH
Confidence 689999887653
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=92.26 E-value=0.12 Score=45.16 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=38.2
Q ss_pred cH-HHHHHHHhCCCeEEEEcCCh--hhHHHHHhCCCCCC--CCHHHHH-hcCCEEEEe
Q 022170 2 GF-RMASNLMKAGYKMAVHDVNC--NVMKMFSDMGVPTK--ETPFEVA-EASDVVITM 53 (301)
Q Consensus 2 G~-~lA~~L~~~G~~V~~~dr~~--~~~~~l~~~g~~~~--~s~~e~~-~~adiVi~~ 53 (301)
|. ++|+.|.+.||+|+++|+++ ...+.+.+.|+.+. .++++.. .++|+|+.+
T Consensus 16 Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~S 73 (326)
T 3eag_A 16 FMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIG 73 (326)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEEC
T ss_pred HHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEEC
Confidence 45 47888999999999999864 35567888887654 2444444 478999985
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=92.22 E-value=0.32 Score=43.74 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=61.3
Q ss_pred cHHHHHHHHhC---------CCeEE-EEcCChhhHHHHHhC-CC-CCCCCHHHHHh--cCCEEEEecCCCccchhhhhcC
Q 022170 2 GFRMASNLMKA---------GYKMA-VHDVNCNVMKMFSDM-GV-PTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 2 G~~lA~~L~~~---------G~~V~-~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~ 67 (301)
|...+..|.+. +.+|. ++|+++++++++.+. |+ ...+|.+++++ +.|+|++|+|+... ..-+..
T Consensus 38 g~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~~~H-~~~~~~- 115 (412)
T 4gqa_A 38 GQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPNHLH-YTMAMA- 115 (412)
T ss_dssp HHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGH-HHHHHH-
T ss_pred HHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCcHHH-HHHHHH-
Confidence 44555566543 34544 789999999888664 55 46789999986 58999999997754 333322
Q ss_pred CCccccCCCCCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 68 PNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 68 ~~~~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
.++. +..++++- -+.+.+.++++.+..++
T Consensus 116 ---al~a----GkhVl~EKP~a~~~~ea~~l~~~a~~ 145 (412)
T 4gqa_A 116 ---AIAA----GKHVYCEKPLAVNEQQAQEMAQAARR 145 (412)
T ss_dssp ---HHHT----TCEEEEESCSCSSHHHHHHHHHHHHH
T ss_pred ---HHHc----CCCeEeecCCcCCHHHHHHHHHHHHH
Confidence 2221 22455554 25678888888887664
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=92.21 E-value=0.26 Score=42.87 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=40.6
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhH--HHHHhCC----CCC---CCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVM--KMFSDMG----VPT---KETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~--~~l~~~g----~~~---~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.+++..|+..| ++|.++|+++.+. ..+.+.. +.. +++++++++++|+||++.+.+
T Consensus 12 VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~ 79 (314)
T 1mld_A 12 IGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79 (314)
T ss_dssp THHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcC
Confidence 5889999999988 7899999987222 2232221 111 246788899999999998755
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.70 E-value=0.5 Score=41.85 Aligned_cols=82 Identities=11% Similarity=0.102 Sum_probs=53.5
Q ss_pred CCeE-EEEcCChhhHHHHHhC-CC-CCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEe-
Q 022170 13 GYKM-AVHDVNCNVMKMFSDM-GV-PTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS- 86 (301)
Q Consensus 13 G~~V-~~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~- 86 (301)
+.+| .++|+++++++.+.+. |+ ...+|.+++++ +.|+|++|+|+... ..-+.. .++. +..++++-
T Consensus 56 ~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~~~H-~~~a~~----al~a----GkhVl~EKP 126 (393)
T 4fb5_A 56 RPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPNQFH-AEMAIA----ALEA----GKHVWCEKP 126 (393)
T ss_dssp CCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCGGGH-HHHHHH----HHHT----TCEEEECSC
T ss_pred CcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCChHHH-HHHHHH----HHhc----CCeEEEccC
Confidence 3465 4789999999888765 65 46789999986 47999999997764 333332 2221 22355544
Q ss_pred CCCCHHHHHHHHHHHhh
Q 022170 87 STIDPQTSRNISAAVSN 103 (301)
Q Consensus 87 st~~p~~~~~~~~~~~~ 103 (301)
=+.+..+++++.+..++
T Consensus 127 la~~~~ea~~l~~~a~~ 143 (393)
T 4fb5_A 127 MAPAYADAERMLATAER 143 (393)
T ss_dssp SCSSHHHHHHHHHHHHH
T ss_pred CcccHHHHHHhhhhHHh
Confidence 25677888888887764
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=91.68 E-value=0.13 Score=44.76 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=41.8
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHH----Hh------CCCCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SD------MGVPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l----~~------~g~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
+|.+++..|+..|+ +|.++|+++++++.. .. ...+...+..+++++||+||++.+.+.
T Consensus 17 vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~~~ 86 (317)
T 3d0o_A 17 VGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAAQ 86 (317)
T ss_dssp HHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCCCC
Confidence 47889999998884 899999998766432 21 122233355778899999999998653
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=0.13 Score=44.03 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=26.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.+++..|++.|++|++++|++++.+.+.+
T Consensus 131 iG~aia~~L~~~G~~V~i~~R~~~~~~~l~~ 161 (287)
T 1lu9_A 131 VGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 161 (287)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 4789999999999999999999988776653
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=91.48 E-value=0.045 Score=44.56 Aligned_cols=55 Identities=11% Similarity=0.198 Sum_probs=35.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC---CCCCC---CCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---GVPTK---ETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~---g~~~~---~s~~e~~~~adiVi~~vp 55 (301)
+|..+++.|++.||+|++.+|++++.+.+... ..... .++.++++++|+||.+..
T Consensus 12 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag 72 (219)
T 3dqp_A 12 VGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSG 72 (219)
T ss_dssp HHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred HHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence 48999999999999999999998765433100 01111 123344456677776655
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=91.38 E-value=0.12 Score=44.04 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=52.8
Q ss_pred CcHHHHHHHH-hCCCeEE-EEcCChhhH--HHH------HhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCc
Q 022170 1 MGFRMASNLM-KAGYKMA-VHDVNCNVM--KMF------SDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 1 mG~~lA~~L~-~~G~~V~-~~dr~~~~~--~~l------~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
||+.+++.+. ..|++|. ++|+++++. ..+ ...++...++++++++++|+|+-+.+ +.. ..+.+..
T Consensus 17 mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~-p~~-~~~~~~~--- 91 (273)
T 1dih_A 17 MGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR-PEG-TLNHLAF--- 91 (273)
T ss_dssp HHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC-HHH-HHHHHHH---
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCC-hHH-HHHHHHH---
Confidence 7888888876 4578876 778876531 111 11244556678888888999994444 233 4444421
Q ss_pred cccCCCCCCCeEEEEeCCCCHHHHHHHHHH
Q 022170 71 LLQGGNSVRPQLLIDSSTIDPQTSRNISAA 100 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~p~~~~~~~~~ 100 (301)
.++ .+..+|+-+++.+++...++.+.
T Consensus 92 a~~----~G~~vVigTtG~~~e~~~~L~~~ 117 (273)
T 1dih_A 92 CRQ----HGKGMVIGTTGFDEAGKQAIRDA 117 (273)
T ss_dssp HHH----TTCEEEECCCCCCHHHHHHHHHH
T ss_pred HHh----CCCCEEEECCCCCHHHHHHHHHh
Confidence 232 12245555566677665555443
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=90.94 E-value=0.23 Score=45.43 Aligned_cols=83 Identities=12% Similarity=0.116 Sum_probs=54.7
Q ss_pred HHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
..++..|.+.|.+|.+||..-.. ........+..++++.++++++|.|++++.+++ .++.-. ..+... .+++
T Consensus 341 ~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~~--f~~~~~--~~~~~~---~~~~ 413 (450)
T 3gg2_A 341 LVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHVTEWKE--FRMPDW--SALSQA---MAAS 413 (450)
T ss_dssp HHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEECSCCGG--GSSCCH--HHHHHH---SSSC
T ss_pred HHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEccCCHH--HhhcCH--HHHHHh---cCCC
Confidence 35788999999999999976432 222211235667899999999999999999765 433210 011111 1246
Q ss_pred EEEEeCCCCHH
Q 022170 82 LLIDSSTIDPQ 92 (301)
Q Consensus 82 ivid~st~~p~ 92 (301)
+|+|.-++...
T Consensus 414 ~i~D~r~~~~~ 424 (450)
T 3gg2_A 414 LVIDGRNVYEL 424 (450)
T ss_dssp EEEESSCCCCC
T ss_pred EEEECCCCCCh
Confidence 89999887653
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=90.93 E-value=0.22 Score=42.54 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=41.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCCh-------hhHHHH---HhCCCCC-------CCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNC-------NVMKMF---SDMGVPT-------KETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~-------~~~~~l---~~~g~~~-------~~s~~e~~~~adiVi~~vp~ 56 (301)
+|+.+++.|++.||+|++.+|++ ++.+.+ ...++.. .+++.++++++|+||.+.+.
T Consensus 14 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~~a~~ 86 (307)
T 2gas_A 14 IGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVICAAGR 86 (307)
T ss_dssp THHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECSSS
T ss_pred HHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEEECCcc
Confidence 58999999999999999999987 554433 3344322 12455677899999999874
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=90.91 E-value=0.33 Score=41.76 Aligned_cols=56 Identities=25% Similarity=0.293 Sum_probs=40.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChh-hHH---HHHhCCCCC-------CCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCN-VMK---MFSDMGVPT-------KETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~-~~~---~l~~~g~~~-------~~s~~e~~~~adiVi~~vp~ 56 (301)
+|+.+++.|++.||+|++.+|+++ +.+ .+...|+.. .+++.++++++|+||.+.+.
T Consensus 23 iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~ 89 (318)
T 2r6j_A 23 IGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAF 89 (318)
T ss_dssp THHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence 589999999999999999999875 332 233445332 12456677899999998873
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.91 E-value=0.27 Score=42.10 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=40.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCC-----hhhHHHH---HhCCCCC-------CCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVN-----CNVMKMF---SDMGVPT-------KETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~-----~~~~~~l---~~~g~~~-------~~s~~e~~~~adiVi~~vp~ 56 (301)
+|+.++..|++.||+|++.+|+ +++.+.+ ...++.. .+++.++++++|+||.+.+.
T Consensus 16 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 86 (313)
T 1qyd_A 16 IGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISALAG 86 (313)
T ss_dssp THHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEECCcc
Confidence 5899999999999999999998 4444333 2334321 12455677899999998874
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.90 E-value=0.28 Score=41.83 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=39.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCCh------hhHHH---HHhCCCCC-------CCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNC------NVMKM---FSDMGVPT-------KETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~------~~~~~---l~~~g~~~-------~~s~~e~~~~adiVi~~vp~ 56 (301)
+|+.++..|++.||+|++.+|++ ++.+. +...|+.. ..++.++++++|+||.+.+.
T Consensus 16 iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~~a~~ 87 (308)
T 1qyc_A 16 IGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVISTVGS 87 (308)
T ss_dssp THHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEECCCG
T ss_pred HHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEECCcc
Confidence 58999999999999999999974 33332 22334322 12455677899999999874
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.73 E-value=0.15 Score=44.24 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=39.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-------CCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adiVi~~vp 55 (301)
+|+.+++.|++.||+|++.+|++++.+.+...++.. ..++.++++++|+||-+..
T Consensus 25 iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 25 LGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred HHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 488999999999999999999988766554333221 1234566778999998875
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=90.70 E-value=0.2 Score=43.84 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=41.8
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHH----HhC-----CCCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM-----GVPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l----~~~-----g~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
+|.+++..|+..++ +|.++|+++++++.. ... ..+...+..+++++||+||++.+.+.
T Consensus 20 vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~~ 88 (326)
T 2zqz_A 20 VGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQ 88 (326)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC-
T ss_pred HHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence 47889999988876 899999998877542 221 12233355778899999999998653
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=90.62 E-value=0.14 Score=43.28 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=40.9
Q ss_pred CcHHHHHHHHhC--CCeEEEEcCChhhHHHHHhCCCCC-------CCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~--G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adiVi~~vp 55 (301)
+|+.++..|.+. ||+|++.+|++++.+.+...++.. ..++.++++++|+||-+..
T Consensus 12 iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 12 LGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp HHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred HHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 488999999998 999999999988776665544321 1234556678899888765
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=90.58 E-value=0.23 Score=40.88 Aligned_cols=54 Identities=6% Similarity=-0.016 Sum_probs=39.3
Q ss_pred CcHHHHHHHHhC--CCeEEEEcCChhhHHHHHhCCCCC-------CCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~--G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adiVi~~vp 55 (301)
+|..+++.|++. ||+|++.+|++++.+.+ ..++.. .+++.+++++.|+||-+..
T Consensus 16 iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 78 (253)
T 1xq6_A 16 TGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTS 78 (253)
T ss_dssp HHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEecc
Confidence 488999999999 89999999998877655 222211 1234566778899888775
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=90.49 E-value=0.15 Score=44.46 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=41.3
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHH----HhC-----CCCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM-----GVPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l----~~~-----g~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
+|.+++..|+..++ +|.++|+++++++.. ... ..+...+..+++++||+||++.+.+.
T Consensus 16 vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~ 84 (318)
T 1ez4_A 16 VGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ 84 (318)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC--
T ss_pred HHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC
Confidence 47889999998886 899999998877532 111 22233355678899999999998653
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=90.44 E-value=0.3 Score=41.98 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=40.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCCh------hhHHHH---HhCCCCC-------CCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNC------NVMKMF---SDMGVPT-------KETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~------~~~~~l---~~~g~~~-------~~s~~e~~~~adiVi~~vp~ 56 (301)
+|+.+++.|++.||+|++.+|++ ++.+.+ ...++.. .+++.++++++|+||.+...
T Consensus 16 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~~a~~ 87 (321)
T 3c1o_A 16 IGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVISALPF 87 (321)
T ss_dssp THHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred hHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEECCCc
Confidence 58999999999999999999986 333322 3344321 12456778899999999863
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=90.39 E-value=0.18 Score=42.59 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=42.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC----CCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s~~e~~~~adiVi~~vp~ 56 (301)
+|+.++..|.+.||+|++.+|++++.+.+...+++.. .+++ +.++|+||-+...
T Consensus 16 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~ 73 (286)
T 3ius_A 16 TARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAP 73 (286)
T ss_dssp HHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred HHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCc
Confidence 4899999999999999999999998887766653221 1233 6789999998864
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=90.32 E-value=0.17 Score=44.37 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=40.8
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHH----HHhC-------CCCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM-------GVPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~----l~~~-------g~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
||.++|..|+..|+ +|.++|+++++++. +... ....+.+.+ .+++||+||++...+
T Consensus 30 vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~aG~~ 98 (331)
T 4aj2_A 30 VGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIITAGAR 98 (331)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEccCCC
Confidence 68899999999997 89999999887654 3321 111234554 589999999987644
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=90.23 E-value=0.14 Score=43.18 Aligned_cols=55 Identities=11% Similarity=0.186 Sum_probs=40.0
Q ss_pred CcHHHHHHHHhC--CCeEEEEcCChhhHHHHHhCCCCC-------CCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~--G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adiVi~~vp 55 (301)
+|+.++..|.+. ||+|++.+|++++.+.+...++.. .+++.++++++|+||-+..
T Consensus 11 iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 11 LGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp HHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred HHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 488999999998 999999999988776665544321 1234556678898888765
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=90.21 E-value=0.26 Score=41.19 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=27.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+.+|++++.+.+.+
T Consensus 20 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (259)
T 4e6p_A 20 IGRAFAEAYVREGATVAIADIDIERARQAAA 50 (259)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4899999999999999999999988776643
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=90.16 E-value=0.55 Score=38.31 Aligned_cols=32 Identities=9% Similarity=0.102 Sum_probs=28.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+.
T Consensus 13 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~ 44 (230)
T 3guy_A 13 LGAELAKLYDAEGKATYLTGRSESKLSTVTNC 44 (230)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 48999999999999999999999988877654
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=89.83 E-value=0.3 Score=40.77 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=27.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 21 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (261)
T 3n74_A 21 FGEGMAKRFAKGGAKVVIVDRDKAGAERVAG 51 (261)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=89.78 E-value=0.28 Score=41.75 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=40.4
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhH--HHHHhCCCCC-------CCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVM--KMFSDMGVPT-------KETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~--~~l~~~g~~~-------~~s~~e~~~~adiVi~~vp 55 (301)
+|+.+++.|++.| |+|.+.+|++++. ..+...++.. .+++.++++++|+||.+.+
T Consensus 17 iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 17 QGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 4889999999988 9999999997764 3344444322 1245567788999999875
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=89.74 E-value=0.39 Score=39.99 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=27.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 17 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (254)
T 1hdc_A 17 LGAEAARQAVAAGARVVLADVLDEEGAATAR 47 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776654
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=89.73 E-value=0.085 Score=43.45 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=22.9
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhH
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVM 26 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~ 26 (301)
+|..+++.|++.|+ +|++.+|++++.
T Consensus 30 iG~~l~~~L~~~G~~~~V~~~~r~~~~~ 57 (242)
T 2bka_A 30 TGRVLLKEILEQGLFSKVTLIGRRKLTF 57 (242)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEESSCCCC
T ss_pred HHHHHHHHHHcCCCCCEEEEEEcCCCCc
Confidence 48999999999999 999999987654
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=89.63 E-value=0.097 Score=45.85 Aligned_cols=56 Identities=14% Similarity=0.048 Sum_probs=42.2
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC----CC---HHHH-HhcCCEEEEecCCCcc
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ET---PFEV-AEASDVVITMLPSSSH 59 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s---~~e~-~~~adiVi~~vp~~~~ 59 (301)
|..+++.|.+.|+ |++.|+|+++++ +.+.+.... ++ +.++ ++++|.|+++++++..
T Consensus 127 g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~ 190 (336)
T 1lnq_A 127 TLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE 190 (336)
T ss_dssp HHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHH
T ss_pred HHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHH
Confidence 6788889999999 999999999998 777654321 22 2333 5689999999997643
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=89.48 E-value=0.27 Score=41.19 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=29.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG 33 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g 33 (301)
+|.++|+.|++.|++|.+.||++++.+++.+.+
T Consensus 14 IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~ 46 (247)
T 3ged_A 14 IGKQICLDFLEAGDKVCFIDIDEKRSADFAKER 46 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc
Confidence 589999999999999999999999888777653
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.46 E-value=0.41 Score=40.44 Aligned_cols=31 Identities=13% Similarity=0.286 Sum_probs=27.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 33 IG~aia~~La~~G~~V~~~~r~~~~~~~~~~ 63 (272)
T 2nwq_A 33 FGEACARRFAEAGWSLVLTGRREERLQALAG 63 (272)
T ss_dssp SHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 6899999999999999999999887766543
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=89.45 E-value=0.34 Score=41.85 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=25.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|+.++..|++.||+|++.+|++++.+.+
T Consensus 23 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 51 (342)
T 1y1p_A 23 VASHVVEQLLEHGYKVRGTARSASKLANL 51 (342)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcccHHHH
Confidence 48999999999999999999998776544
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=89.43 E-value=0.27 Score=44.28 Aligned_cols=57 Identities=7% Similarity=0.095 Sum_probs=42.3
Q ss_pred CcHHHHHHHHhCCC---eEEEEcCChhhHHHHHhC-------CCC-----C--CCCHHHHHhc--CCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY---KMAVHDVNCNVMKMFSDM-------GVP-----T--KETPFEVAEA--SDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~---~V~~~dr~~~~~~~l~~~-------g~~-----~--~~s~~e~~~~--adiVi~~vp~~ 57 (301)
+|..++..|++.|. +|.+++|++++.+.+.+. .+. . .+++++++++ +|+||.|.|..
T Consensus 12 iG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVin~ag~~ 87 (405)
T 4ina_A 12 VGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVLNIALPY 87 (405)
T ss_dssp HHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEEECSCGG
T ss_pred HHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEEECCCcc
Confidence 58899999999983 899999999998776542 111 1 2345566766 89999999854
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=89.39 E-value=0.43 Score=39.88 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=27.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 24 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 54 (263)
T 3ak4_A 24 IGAAIARALDKAGATVAIADLDVMAAQAVVA 54 (263)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4899999999999999999999988776654
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=89.38 E-value=0.34 Score=40.20 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=27.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 21 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (253)
T 3qiv_A 21 IGQAYAEALAREGAAVVVADINAEAAEAVAK 51 (253)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=89.38 E-value=2.2 Score=35.44 Aligned_cols=78 Identities=12% Similarity=0.188 Sum_probs=48.2
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHHh-cCCEEEEecCCCccchhhhhcCCCccccCCCC
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNS 77 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~-~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~ 77 (301)
||+.++..+.+. |++|. ++|++ ++++++.. .+|+||-+.+ +.. +.+.+.. .++
T Consensus 12 mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~-p~a-~~~~~~~---a~~---- 67 (245)
T 1p9l_A 12 VGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFTH-PDV-VMGNLEF---LID---- 67 (245)
T ss_dssp HHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECSC-TTT-HHHHHHH---HHH----
T ss_pred HHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEccC-hHH-HHHHHHH---HHH----
Confidence 788999888765 89976 55764 34556554 7899996665 333 4554421 222
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHHh
Q 022170 78 VRPQLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 78 ~~~~ivid~st~~p~~~~~~~~~~~ 102 (301)
.+-.+|+-+++.+++...++.+...
T Consensus 68 ~g~~~VigTTG~~~e~~~~l~~aa~ 92 (245)
T 1p9l_A 68 NGIHAVVGTTGFTAERFQQVESWLV 92 (245)
T ss_dssp TTCEEEECCCCCCHHHHHHHHHHHH
T ss_pred cCCCEEEcCCCCCHHHHHHHHHHHH
Confidence 1224666666677776666655543
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=89.32 E-value=0.34 Score=40.58 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=26.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 19 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (260)
T 1nff_A 19 MGASHVRAMVAEGAKVVFGDILDEEGKAMAA 49 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4899999999999999999999887766543
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=89.32 E-value=0.69 Score=40.84 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=52.1
Q ss_pred eE-EEEcCChhhHHHHHhC-CC-CCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEe-CC
Q 022170 15 KM-AVHDVNCNVMKMFSDM-GV-PTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS-ST 88 (301)
Q Consensus 15 ~V-~~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~-st 88 (301)
+| .++|+++++++.+.+. |+ ...+|.+++++ +.|+|++|+|+... ..-+.. .++. +..++++- =+
T Consensus 39 ~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~~H-~~~~~~----al~a----GkhVl~EKPla 109 (390)
T 4h3v_A 39 DLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGDSH-AEIAIA----ALEA----GKHVLCEKPLA 109 (390)
T ss_dssp EEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGGGH-HHHHHH----HHHT----TCEEEEESSSC
T ss_pred eEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHH-HHHHHH----HHHc----CCCceeecCcc
Confidence 44 4789999999887654 55 45789999985 48999999997765 333332 2221 22455554 25
Q ss_pred CCHHHHHHHHHHH
Q 022170 89 IDPQTSRNISAAV 101 (301)
Q Consensus 89 ~~p~~~~~~~~~~ 101 (301)
.+..+++++.+.+
T Consensus 110 ~t~~ea~~l~~~~ 122 (390)
T 4h3v_A 110 NTVAEAEAMAAAA 122 (390)
T ss_dssp SSHHHHHHHHHHH
T ss_pred cchhHHHHHHHHH
Confidence 6778888885553
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=89.26 E-value=0.34 Score=40.29 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=27.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 21 IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (248)
T 3op4_A 21 IGKAIAELLAERGAKVIGTATSESGAQAISD 51 (248)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.24 E-value=0.32 Score=42.52 Aligned_cols=84 Identities=8% Similarity=0.065 Sum_probs=51.8
Q ss_pred hCCCeEE-EEcCCh-hhHHHHHh----CC--CCCCCCHHHHHhc--CCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 11 KAGYKMA-VHDVNC-NVMKMFSD----MG--VPTKETPFEVAEA--SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 11 ~~G~~V~-~~dr~~-~~~~~l~~----~g--~~~~~s~~e~~~~--adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
..+.+|. ++|+++ ++.+.+.+ .| ....+|+++++++ .|+|++|+|+... ..-+.. .++. +.
T Consensus 22 ~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H-~~~~~~----al~a----Gk 92 (337)
T 3ip3_A 22 DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLN-GKILLE----ALER----KI 92 (337)
T ss_dssp CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHH-HHHHHH----HHHT----TC
T ss_pred CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcchH-HHHHHH----HHHC----CC
Confidence 4566765 689887 34433332 24 3567899999864 8999999997653 222221 2221 22
Q ss_pred eEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
.++++- -+.+.++++++.+..++
T Consensus 93 hVl~EKPla~~~~ea~~l~~~a~~ 116 (337)
T 3ip3_A 93 HAFVEKPIATTFEDLEKIRSVYQK 116 (337)
T ss_dssp EEEECSSSCSSHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHH
Confidence 355543 25677888888887765
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=89.05 E-value=0.35 Score=40.97 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=26.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 44 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 74 (276)
T 3r1i_A 44 IGKKVALAYAEAGAQVAVAARHSDALQVVAD 74 (276)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999887766543
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.97 E-value=0.37 Score=39.83 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=27.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 26 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 56 (249)
T 3f9i_A 26 IGSAIARLLHKLGSKVIISGSNEEKLKSLGN 56 (249)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 5899999999999999999999988776653
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=88.82 E-value=0.39 Score=40.63 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=27.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 40 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 70 (272)
T 4dyv_A 40 VGRAVAVALAGAGYGVALAGRRLDALQETAA 70 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776654
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=88.70 E-value=0.38 Score=40.26 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.0
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChh
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCN 24 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~ 24 (301)
+|+.+|..|++.|. +++++|++.-
T Consensus 42 ~G~~va~~La~~Gv~~i~lvD~d~v 66 (249)
T 1jw9_B 42 LGCAASQYLASAGVGNLTLLDFDTV 66 (249)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred HHHHHHHHHHHcCCCeEEEEcCCCc
Confidence 48899999999997 8999999873
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=88.64 E-value=0.39 Score=41.86 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=40.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCCh----hhHH---HHHhCCCCC-------CCCHHHHHh--cCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNC----NVMK---MFSDMGVPT-------KETPFEVAE--ASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~----~~~~---~l~~~g~~~-------~~s~~e~~~--~adiVi~~vp~ 56 (301)
+|+.++..|++.||+|++.+|++ ++.+ .+...++.. ..++.++++ ++|+||.+...
T Consensus 22 iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~a~~ 93 (346)
T 3i6i_A 22 IGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVSTVGG 93 (346)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEECCCG
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEECCch
Confidence 48899999999999999999976 4443 233334322 234566778 99999999874
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=88.61 E-value=0.42 Score=39.66 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=27.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 18 IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (247)
T 3rwb_A 18 IGKAIAARLAADGATVIVSDINAEGAKAAAA 48 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=88.56 E-value=0.32 Score=40.86 Aligned_cols=31 Identities=6% Similarity=0.089 Sum_probs=27.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|.+|.+++|++++.+++.+
T Consensus 19 IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~ 49 (254)
T 4fn4_A 19 IGRAIAKKFALNDSIVVAVELLEDRLNQIVQ 49 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.55 E-value=0.38 Score=40.36 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=27.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 18 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (263)
T 2a4k_A 18 IGRAALDLFAREGASLVAVDREERLLAEAVA 48 (263)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776654
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.55 E-value=0.49 Score=39.15 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=27.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 17 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (245)
T 1uls_A 17 IGRATLELFAKEGARLVACDIEEGPLREAAE 47 (245)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4899999999999999999999988776654
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=88.46 E-value=0.63 Score=39.04 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=26.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 32 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 61 (266)
T 4egf_A 32 IGADIARAFAAAGARLVLSGRDVSELDAAR 61 (266)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999998876654
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=88.45 E-value=0.25 Score=42.86 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=41.4
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhHHHH----HhC-----CCCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMF----SDM-----GVPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~~~l----~~~-----g~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
+|.+++..|+..+ .+|.++|+++++++.. ... ..+...+..+++++||+||++.+.+.
T Consensus 11 vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~ 79 (310)
T 2xxj_A 11 VGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQ 79 (310)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCC
Confidence 4788999998887 5899999998876532 221 12222234677899999999987653
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.34 E-value=0.42 Score=40.48 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=27.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 39 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 69 (277)
T 4dqx_A 39 IGRATAELFAKNGAYVVVADVNEDAAVRVAN 69 (277)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776654
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=88.32 E-value=0.11 Score=42.57 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=36.4
Q ss_pred CcHHHHHH--HHhCCCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASN--LMKAGYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~--L~~~G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||..+++. +...|+++. ++|+++++....... ++...+++.+.++..|+|++|+|+..
T Consensus 96 ~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~~ 157 (215)
T 2vt3_A 96 LGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAVA 157 (215)
T ss_dssp HHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHHH
T ss_pred HHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCchh
Confidence 46677773 334578766 569999987654321 23335678888866699999999643
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=88.20 E-value=0.32 Score=41.63 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=37.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----CCCCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----MGVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----~g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
+|+.++..|.+.||+|++.+|++...+ +.. ..+. ..++.++++++|+||-+...
T Consensus 14 iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 14 LGQYVVESIKNDGNTPIILTRSIGNKA-INDYEYRVSDYT-LEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCCccc-CCceEEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence 489999999999999999999865544 321 1233 34566777899999988753
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.15 E-value=0.46 Score=39.55 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 14 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 43 (256)
T 1geg_A 14 IGKAIALRLVKDGFAVAIADYNDATAKAVA 43 (256)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 489999999999999999999988766543
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=88.09 E-value=0.57 Score=38.67 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=25.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 23 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 52 (255)
T 1fmc_A 23 IGKEIAITFATAGASVVVSDINADAANHVV 52 (255)
T ss_dssp HHHHHHHHHHTTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 488999999999999999999988765543
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.02 E-value=0.37 Score=40.17 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=22.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+...
T Consensus 19 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (257)
T 3tpc_A 19 LGAAVTRMLAQEGATVLGLDLKPPAGEEPA 48 (257)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCC------
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 589999999999999999999988765544
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=87.95 E-value=1.5 Score=39.74 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=53.1
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHH------HHHhC--C---CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcc
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNVMK------MFSDM--G---VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGL 71 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~~~------~l~~~--g---~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~ 71 (301)
..++..|.+.|.+|.+||..-+... .+... + ...+.++.++++++|+|++++.++. .+++-. ..
T Consensus 336 ~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vi~~~~~~--~~~~~~---~~ 410 (436)
T 1mv8_A 336 VELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDEL--FVDLVN---KT 410 (436)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHCSEEEECSCCGG--GHHHHH---SC
T ss_pred HHHHHHHHHCCCEEEEECCCCChhhccchhhhhcccccccccccccCCHHHHHhCCcEEEEeCCcHH--HHhhhH---Hh
Confidence 4688999999999999996433221 12100 0 1456788999999999999999865 665431 12
Q ss_pred ccCCCCCCCeEEEEeCCCCH
Q 022170 72 LQGGNSVRPQLLIDSSTIDP 91 (301)
Q Consensus 72 l~~~~~~~~~ivid~st~~p 91 (301)
+ ++++|+|.-++..
T Consensus 411 ~------~~~~i~D~r~~~~ 424 (436)
T 1mv8_A 411 P------SGKKLVDLVGFMP 424 (436)
T ss_dssp C------TTCEEEESSSCCS
T ss_pred c------CCCEEEECCCCCC
Confidence 2 2468999987653
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=87.87 E-value=0.64 Score=40.52 Aligned_cols=85 Identities=14% Similarity=0.194 Sum_probs=55.9
Q ss_pred HHHHHHHhC-CCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHHhc---CCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 4 RMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 4 ~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~~---adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
..+..|.+. +.+|. ++|+++++ .|+...+|+++++++ .|+|++|+|+... .++... .++ .
T Consensus 40 ~~~~~l~~~~~~~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H--~~~~~~---al~----a 104 (330)
T 4ew6_A 40 QHLPSIAKNANFKLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPPQYR--YEAAYK---ALV----A 104 (330)
T ss_dssp THHHHHHHCTTEEEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCHHHH--HHHHHH---HHH----T
T ss_pred HHHHHHHhCCCeEEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCcHHH--HHHHHH---HHH----c
Confidence 456667664 56754 67999764 367778899999865 8999999996543 233221 222 1
Q ss_pred CCeEEEEeC-CCCHHHHHHHHHHHhh
Q 022170 79 RPQLLIDSS-TIDPQTSRNISAAVSN 103 (301)
Q Consensus 79 ~~~ivid~s-t~~p~~~~~~~~~~~~ 103 (301)
+..++++.- +.+.+.++++.+..++
T Consensus 105 GkhVl~EKP~a~~~~e~~~l~~~a~~ 130 (330)
T 4ew6_A 105 GKHVFLEKPPGATLSEVADLEALANK 130 (330)
T ss_dssp TCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred CCcEEEeCCCCCCHHHHHHHHHHHHh
Confidence 224555442 5678888888887765
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=87.85 E-value=0.65 Score=37.86 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=26.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 17 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (234)
T 2ehd_A 17 IGEATARLLHAKGYRVGLMARDEKRLQALAA 47 (234)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4889999999999999999999887766543
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=87.75 E-value=0.45 Score=40.16 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=26.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 38 IG~aia~~la~~G~~V~~~~r~~~~~~~~~ 67 (271)
T 4ibo_A 38 LGRAMAEGLAVAGARILINGTDPSRVAQTV 67 (271)
T ss_dssp HHHHHHHHHHHTTCEEEECCSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999998876654
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=87.68 E-value=0.48 Score=39.96 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=27.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 17 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (281)
T 3m1a_A 17 FGRAIAEAAVAAGDTVIGTARRTEALDDLVA 47 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4899999999999999999999988776654
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=87.67 E-value=0.45 Score=39.62 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=25.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 24 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 53 (265)
T 2o23_A 24 LGLATAERLVGQGASAVLLDLPNSGGEAQA 53 (265)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHhHHHHH
Confidence 489999999999999999999987766554
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=87.61 E-value=0.5 Score=38.84 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=25.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 19 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 48 (248)
T 2pnf_A 19 IGRAIAEKLASAGSTVIITGTSGERAKAVA 48 (248)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 489999999999999999999988766543
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.60 E-value=0.51 Score=39.71 Aligned_cols=31 Identities=10% Similarity=0.275 Sum_probs=27.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 21 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (270)
T 1yde_A 21 IGAGIVRAFVNSGARVVICDKDESGGRALEQ 51 (270)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4899999999999999999999988766644
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=87.56 E-value=0.5 Score=41.53 Aligned_cols=56 Identities=11% Similarity=0.074 Sum_probs=39.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH--HHHHhC-CC-----C-C--CCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM--KMFSDM-GV-----P-T--KETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~--~~l~~~-g~-----~-~--~~s~~e~~~~adiVi~~vp~ 56 (301)
+|..+++.|++.||+|++.+|++++. +.+... ++ . . ..++.++++++|+||.+...
T Consensus 17 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~ 83 (352)
T 1xgk_A 17 QGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS 83 (352)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred HHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence 48899999999999999999987765 344332 22 1 1 12355677899999987753
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.55 E-value=0.45 Score=40.06 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=26.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 23 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 53 (271)
T 3tzq_B 23 IGLETSRVLARAGARVVLADLPETDLAGAAA 53 (271)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSCHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 5899999999999999999999887766543
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=87.48 E-value=0.43 Score=39.95 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=25.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|.+.+|+++..+++.
T Consensus 20 IG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~ 49 (256)
T 4fs3_A 20 IAFGVAKVLDQLGAKLVFTYRKERSRKELE 49 (256)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 488999999999999999999987766554
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=87.36 E-value=0.54 Score=39.52 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=26.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|.+.+|++++.+.+.
T Consensus 39 IG~aia~~la~~G~~V~~~~r~~~~~~~~~ 68 (266)
T 3grp_A 39 IGEAIARCFHAQGAIVGLHGTREDKLKEIA 68 (266)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999998877664
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=87.34 E-value=0.53 Score=39.69 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=26.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 40 IG~aia~~la~~G~~V~~~~r~~~~~~~~~ 69 (270)
T 3ftp_A 40 IGRAIALELARRGAMVIGTATTEAGAEGIG 69 (270)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776654
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=87.28 E-value=0.49 Score=39.08 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=24.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCC-hhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVN-CNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~-~~~~~~l 29 (301)
+|..+++.|++.|++|++.+|+ +++.+.+
T Consensus 19 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 48 (258)
T 3afn_B 19 IGLATARLFARAGAKVGLHGRKAPANIDET 48 (258)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCCTTHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECCCchhhHHHH
Confidence 4899999999999999999998 7665544
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=87.17 E-value=0.44 Score=40.52 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=27.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|.+|.+.+|+++++++..+
T Consensus 41 IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~ 71 (273)
T 4fgs_A 41 IGLAAAKRFVAEGARVFITGRRKDVLDAAIA 71 (273)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998876644
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=87.08 E-value=0.3 Score=41.19 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=25.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|.++|+.|++.|++|.+.+|++++.+.+
T Consensus 28 IG~aia~~l~~~G~~V~~~~r~~~~~~~~ 56 (266)
T 3p19_A 28 IGEAIARRFSEEGHPLLLLARRVERLKAL 56 (266)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHHHTT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHh
Confidence 58999999999999999999998876544
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=87.04 E-value=0.7 Score=39.03 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 45 IG~aia~~la~~G~~V~~~~r~~~~~~~~~ 74 (275)
T 4imr_A 45 IGAAIAEGLAGAGAHVILHGVKPGSTAAVQ 74 (275)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSTTTTHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 589999999999999999999988766554
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=86.86 E-value=0.6 Score=38.69 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=25.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|..+++.|++.|++|++.+|++++.+.+
T Consensus 25 iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 53 (260)
T 3awd_A 25 IGLACVTALAEAGARVIIADLDEAMATKA 53 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 48999999999999999999998776544
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=86.78 E-value=0.36 Score=42.49 Aligned_cols=55 Identities=11% Similarity=0.239 Sum_probs=40.5
Q ss_pred CcHHHHHHHHhC-CCeEEEEcCChhhHHHHHhC-CC-----CC---CCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDM-GV-----PT---KETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~-g~-----~~---~~s~~e~~~~adiVi~~vp 55 (301)
+|+.++..|++. ||+|++.+|++++...+... ++ .. ..++.++++++|+||-+..
T Consensus 36 iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~ 100 (372)
T 3slg_A 36 IGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVA 100 (372)
T ss_dssp HHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred HHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence 489999999998 99999999998877666542 21 11 2234567788999998654
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=86.66 E-value=0.45 Score=40.02 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=26.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|.+|.+.+|++++.++..
T Consensus 21 IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~ 50 (255)
T 4g81_D 21 LGFAYAEGLAAAGARVILNDIRATLLAESV 50 (255)
T ss_dssp HHHHHHHHHHHTTCEEEECCSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 589999999999999999999998776543
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=86.55 E-value=0.69 Score=42.22 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=38.6
Q ss_pred cHHHHHHHHhCCCeEEEEcCCh----hhHHHHHhCCCCCC--CCHHHHHhc-CCEEEEec
Q 022170 2 GFRMASNLMKAGYKMAVHDVNC----NVMKMFSDMGVPTK--ETPFEVAEA-SDVVITML 54 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~----~~~~~l~~~g~~~~--~s~~e~~~~-adiVi~~v 54 (301)
|.+.|+.|.+.||+|+++|+++ ...+.+.+.|+.+. ..+.+...+ +|+|+++-
T Consensus 21 G~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~sp 80 (451)
T 3lk7_A 21 GEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNP 80 (451)
T ss_dssp HHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECT
T ss_pred HHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECC
Confidence 6778999999999999999854 23567777787553 233445566 89999863
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.46 E-value=0.82 Score=38.49 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 44 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 73 (279)
T 1xg5_A 44 IGAAVARALVQQGLKVVGCARTVGNIEELA 73 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECChHHHHHHH
Confidence 489999999999999999999988766553
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=86.38 E-value=1.5 Score=39.72 Aligned_cols=73 Identities=8% Similarity=0.173 Sum_probs=50.8
Q ss_pred HHHHHHHHhC-CCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 3 FRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 3 ~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
..++..|.+. |.+|.+||..-... ....++.++++++|+|++++.+++ .+++-. +.+ .. .+++
T Consensus 338 ~~i~~~L~~~~g~~V~~~DP~~~~~--------~~~~~~~~~~~~ad~vvi~t~~~~--f~~~d~--~~~-~~---~~~~ 401 (431)
T 3ojo_A 338 FDIYELLNQEPDIEVCAYDPHVELD--------FVEHDMSHAVKDASLVLILSDHSE--FKNLSD--SHF-DK---MKHK 401 (431)
T ss_dssp HHHHHHHHHSTTCEEEEECSSCCCT--------TBCSTTHHHHTTCSEEEECSCCGG--GTSCCG--GGG-TT---CSSC
T ss_pred HHHHHHHHhhcCCEEEEECCCcccc--------cccCCHHHHHhCCCEEEEecCCHH--HhccCH--HHH-Hh---CCCC
Confidence 3578889998 99999998643321 345778899999999999999775 444311 112 21 1346
Q ss_pred EEEEeCCCCH
Q 022170 82 LLIDSSTIDP 91 (301)
Q Consensus 82 ivid~st~~p 91 (301)
+|+|.-++.+
T Consensus 402 ~i~D~r~~~~ 411 (431)
T 3ojo_A 402 VIFDTKNVVK 411 (431)
T ss_dssp EEEESSCCCC
T ss_pred EEEECCCCCC
Confidence 9999988764
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=86.17 E-value=1.1 Score=38.26 Aligned_cols=89 Identities=17% Similarity=0.057 Sum_probs=56.6
Q ss_pred CcHHHHHHHHh----CCCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCcccc
Q 022170 1 MGFRMASNLMK----AGYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQ 73 (301)
Q Consensus 1 mG~~lA~~L~~----~G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~ 73 (301)
||...+..|.+ .+.++. ++||++.. .+.|+. ..|++++++ +.|+|++|+|+... ...+.. .++
T Consensus 18 iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H-~~~~~~----al~ 87 (294)
T 1lc0_A 18 AGSVRLRDLKDPRSAAFLNLIGFVSRRELG----SLDEVR-QISLEDALRSQEIDVAYICSESSSH-EDYIRQ----FLQ 87 (294)
T ss_dssp HHHHHHHHHTSHHHHTTEEEEEEECSSCCC----EETTEE-BCCHHHHHHCSSEEEEEECSCGGGH-HHHHHH----HHH
T ss_pred HHHHHHHHHhccccCCCEEEEEEECchHHH----HHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhH-HHHHHH----HHH
Confidence 46666777654 356654 67886421 123444 478999986 68999999997654 333332 232
Q ss_pred CCCCCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 74 GGNSVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 74 ~~~~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
. +..++++. -+.++++++++.+..++
T Consensus 88 a----GkhVl~EKPla~~~~ea~~l~~~a~~ 114 (294)
T 1lc0_A 88 A----GKHVLVEYPMTLSFAAAQELWELAAQ 114 (294)
T ss_dssp T----TCEEEEESCSCSCHHHHHHHHHHHHH
T ss_pred C----CCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1 23467765 46788889999887765
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.15 E-value=0.54 Score=38.66 Aligned_cols=31 Identities=10% Similarity=0.176 Sum_probs=27.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+.+|++++.+.+.+
T Consensus 15 IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~ 45 (235)
T 3l6e_A 15 LGRALTIGLVERGHQVSMMGRRYQRLQQQEL 45 (235)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776543
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.15 E-value=0.7 Score=37.86 Aligned_cols=31 Identities=10% Similarity=0.224 Sum_probs=27.0
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~ 31 (301)
+|..+++.|++.| ++|++.+|++++.+.+.+
T Consensus 15 iG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~ 47 (250)
T 1yo6_A 15 IGLGLVQQLVKDKNIRHIIATARDVEKATELKS 47 (250)
T ss_dssp HHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHh
Confidence 4889999999999 999999999888776654
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=86.07 E-value=0.83 Score=37.58 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 18 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 47 (251)
T 1zk4_A 18 IGLAIATKFVEEGAKVMITGRHSDVGEKAA 47 (251)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 489999999999999999999988766554
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=85.91 E-value=0.56 Score=38.97 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=26.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 24 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 53 (252)
T 3f1l_A 24 IGREAAMTYARYGATVILLGRNEEKLRQVA 53 (252)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999998876654
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.81 E-value=0.7 Score=39.60 Aligned_cols=30 Identities=17% Similarity=0.407 Sum_probs=26.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 43 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 72 (301)
T 3tjr_A 43 IGLATATEFARRGARLVLSDVDQPALEQAV 72 (301)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 489999999999999999999998876654
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=85.81 E-value=0.57 Score=39.06 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=27.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 18 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (257)
T 3imf_A 18 MGKGMATRFAKEGARVVITGRTKEKLEEAKL 48 (257)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776653
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=85.80 E-value=0.56 Score=39.01 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=26.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 19 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (252)
T 3h7a_A 19 IGAEIAKKFAAEGFTVFAGRRNGEKLAPLVA 49 (252)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4899999999999999999999988766543
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.72 E-value=0.58 Score=38.52 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=26.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 26 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 56 (247)
T 3i1j_A 26 IGAAAARAYAAHGASVVLLGRTEASLAEVSD 56 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=85.70 E-value=0.76 Score=38.11 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=27.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 12 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 42 (248)
T 3asu_A 12 FGECITRRFIQQGHKVIATGRRQERLQELKD 42 (248)
T ss_dssp THHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 6899999999999999999999887766543
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=85.65 E-value=0.81 Score=40.88 Aligned_cols=81 Identities=15% Similarity=0.106 Sum_probs=52.5
Q ss_pred cHHHHHHHHhCCC-eEEEEcCCh-------hhHHHHHhC------CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 2 GFRMASNLMKAGY-KMAVHDVNC-------NVMKMFSDM------GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 2 G~~lA~~L~~~G~-~V~~~dr~~-------~~~~~l~~~------g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
|.++|+.+...|. +|+++|++- +.++.+.+. ......++.|+++++|++|=+.. +....++++..
T Consensus 200 G~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~Sa-pgl~T~EmVk~ 278 (398)
T 2a9f_A 200 GLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVSA-PGVLKAEWISK 278 (398)
T ss_dssp HHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECCS-TTCCCHHHHHT
T ss_pred HHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecCC-CCCCCHHHHHh
Confidence 6788888888898 899999862 222222111 11224579999999999887654 33214555543
Q ss_pred CCccccCCCCCCCeEEEEeCCCCHH
Q 022170 68 PNGLLQGGNSVRPQLLIDSSTIDPQ 92 (301)
Q Consensus 68 ~~~~l~~~~~~~~~ivid~st~~p~ 92 (301)
+ .++++|+++|+-.|+
T Consensus 279 M---------a~~pIIfalsNPt~E 294 (398)
T 2a9f_A 279 M---------AARPVIFAMANPIPE 294 (398)
T ss_dssp S---------CSSCEEEECCSSSCS
T ss_pred h---------CCCCEEEECCCCCcc
Confidence 2 356799999997764
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=85.61 E-value=1.2 Score=41.11 Aligned_cols=83 Identities=10% Similarity=0.068 Sum_probs=54.3
Q ss_pred HHHHHHHHhCCCeEEEEcCChhh-HHHHHh----------CCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcc
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNV-MKMFSD----------MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGL 71 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~----------~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~ 71 (301)
..++..|.+.|.+|.+||..... ...... ..+..+.++.++++++|+|++++.++. .+++-. ..+
T Consensus 351 ~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~~--f~~~~~--~~~ 426 (478)
T 2y0c_A 351 RELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAARDADALVIVTEWKI--FKSPDF--VAL 426 (478)
T ss_dssp HHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHHTTTCSEEEECSCCGG--GGSCCH--HHH
T ss_pred HHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHHHhCCCEEEEecCChH--hhccCH--HHH
Confidence 35788999999999999975322 111111 135567788999999999999999865 443211 011
Q ss_pred ccCCCCCCCeEEEEeCCCCHH
Q 022170 72 LQGGNSVRPQLLIDSSTIDPQ 92 (301)
Q Consensus 72 l~~~~~~~~~ivid~st~~p~ 92 (301)
... .+.++|+|.-++...
T Consensus 427 ~~~---~~~~~i~D~r~~~~~ 444 (478)
T 2y0c_A 427 GRL---WKTPVIFDGRNLYEP 444 (478)
T ss_dssp HTT---CSSCEEEESSCCSCH
T ss_pred Hhh---cCCCEEEECCCCCCH
Confidence 111 123699999987653
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.49 E-value=0.59 Score=40.42 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=37.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-------CCCC-----C--CCCHHHHHh--cCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-------MGVP-----T--KETPFEVAE--ASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-------~g~~-----~--~~s~~e~~~--~adiVi~~vp 55 (301)
+|+.++..|++.||+|++.+|+++......+ .++. . ..++.++++ ..|+||-+..
T Consensus 17 iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~ 87 (341)
T 3enk_A 17 IGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAIHFAA 87 (341)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEEECcc
Confidence 4899999999999999999997665433221 1211 1 123445555 7899998764
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=85.49 E-value=0.6 Score=38.91 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=27.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 20 IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (255)
T 4eso_A 20 MGLATVRRLVEGGAEVLLTGRNESNIARIRE 50 (255)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776654
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=85.36 E-value=0.58 Score=40.01 Aligned_cols=54 Identities=7% Similarity=0.167 Sum_probs=29.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhc--CCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA--SDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~--adiVi~~vp 55 (301)
+|+.++..|++.||+|++.+|+++.-. .....+.-..++.++++. .|+||-+..
T Consensus 14 iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A~ 69 (315)
T 2ydy_A 14 LGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCAA 69 (315)
T ss_dssp HHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC-
T ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence 488999999999999999998765411 111112222345566664 899998765
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.30 E-value=0.91 Score=38.64 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=25.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 30 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 59 (303)
T 1yxm_A 30 IGKAIVKELLELGSNVVIASRKLERLKSAA 59 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 489999999999999999999988765543
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=85.15 E-value=1.5 Score=37.84 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=36.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH---HHHHhC------------CCCCCCCHHHHHhcCCEEEEec
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM---KMFSDM------------GVPTKETPFEVAEASDVVITML 54 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~---~~l~~~------------g~~~~~s~~e~~~~adiVi~~v 54 (301)
+|+.++..|++.||+|++..|+++.. ..+.+. .+.-..++.++++++|+||-+.
T Consensus 17 IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A 85 (337)
T 2c29_D 17 IGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHVA 85 (337)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEEEec
Confidence 48899999999999999888887632 222110 1222345667778888888654
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.00 E-value=1.6 Score=36.04 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMK 27 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~ 27 (301)
+|.++|+.|++.|++|++.+|+++..+
T Consensus 31 IG~~~a~~l~~~G~~V~~~~r~~~~~~ 57 (249)
T 1o5i_A 31 IGRAVADVLSQEGAEVTICARNEELLK 57 (249)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 489999999999999999999985443
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=84.82 E-value=0.72 Score=41.23 Aligned_cols=72 Identities=21% Similarity=0.216 Sum_probs=45.5
Q ss_pred cHHHHHHHHhCCC---eEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 2 GFRMASNLMKAGY---KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 2 G~~lA~~L~~~G~---~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
|..-+..+..-|. .|++||+++.+. |... +.+..+|+||-|+..+.. ...++.. ..++.+ ..
T Consensus 227 G~~A~~~a~~lGa~~~~V~v~D~~~~~~------g~~~-----~~i~~aDivIn~vlig~~-aP~Lvt~--e~v~~m-~k 291 (394)
T 2qrj_A 227 GSGAIDLLHKVGIPDANILKWDIKETSR------GGPF-----DEIPQADIFINCIYLSKP-IAPFTNM--EKLNNP-NR 291 (394)
T ss_dssp HHHHHHHHHHTTCCGGGEEEECHHHHTT------CSCC-----THHHHSSEEEECCCCCSS-CCCSCCH--HHHCCT-TC
T ss_pred HHHHHHHHHhCCCCcCceEEeecccccc------CCch-----hhHhhCCEEEECcCcCCC-CCcccCH--HHHhcC-cC
Confidence 4555666778897 899999886322 3332 346689999999997433 2222221 123321 15
Q ss_pred CCeEEEEeCC
Q 022170 79 RPQLLIDSST 88 (301)
Q Consensus 79 ~~~ivid~st 88 (301)
++.+|||.|-
T Consensus 292 ~gsVIVDVA~ 301 (394)
T 2qrj_A 292 RLRTVVDVSA 301 (394)
T ss_dssp CCCEEEETTC
T ss_pred CCeEEEEEec
Confidence 7889999973
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=84.81 E-value=5.4 Score=36.69 Aligned_cols=107 Identities=9% Similarity=0.103 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CCccccccCC----CCCCcccCCCCCCC
Q 022170 168 NGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYN----PVPGVMEGVPASRN 236 (301)
Q Consensus 168 ~a~~~k~~~N~~~~~~~~~~~E~~~l~~~------~G~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~ 236 (301)
....++.+.|.+-+..+...+|++.+.++ .++|..++..++..|. .+|+++.... .-|.+- ..+
T Consensus 317 ~~~~~~~~~~al~~~~i~~yaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~-~ll---- 391 (484)
T 4gwg_A 317 KKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQ-NLL---- 391 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSTTCTTCBHHHHHHHHHHHHCTTCS-CGG----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHccCceeHHHHHHHHHHHHHhCCCch-hhh----
Confidence 46789999999999999999999987765 4599999999999886 4566553211 001100 000
Q ss_pred CCCCcc--hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 022170 237 YGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 279 (301)
Q Consensus 237 ~~~~~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 279 (301)
+++-|. +.......+.++..+-+.|+|+|.+.+++..|+.-..
T Consensus 392 ~~~~f~~~~~~~~~~~r~vv~~a~~~gip~P~~s~al~y~~~~r~ 436 (484)
T 4gwg_A 392 LDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRH 436 (484)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 111121 3334456677999999999999999999998887743
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=84.75 E-value=0.89 Score=37.69 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=24.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcC-ChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDV-NCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr-~~~~~~~l 29 (301)
+|.++++.|++.|++|++.+| ++++.+.+
T Consensus 19 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 48 (261)
T 1gee_A 19 LGKSMAIRFATEKAKVVVNYRSKEDEANSV 48 (261)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCChHHHHHH
Confidence 489999999999999999999 77665544
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.75 E-value=0.68 Score=38.72 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=26.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 22 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (262)
T 3pk0_A 22 IGRGIATVFARAGANVAVAGRSTADIDACV 51 (262)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999998876554
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=84.73 E-value=0.7 Score=37.75 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=26.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|.+.+|++++.+.+.
T Consensus 14 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 43 (235)
T 3l77_A 14 IGEAIARALARDGYALALGARSVDRLEKIA 43 (235)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 489999999999999999999998876654
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=84.70 E-value=0.8 Score=40.02 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=40.2
Q ss_pred CcHHHHHHHHhC-CC-eEEEEcCChhhHHHHHhC----CC-------CCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKA-GY-KMAVHDVNCNVMKMFSDM----GV-------PTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~-G~-~V~~~dr~~~~~~~l~~~----g~-------~~~~s~~e~~~~adiVi~~vp 55 (301)
+|+.+++.|++. |+ +|++++|++.+.+.+.+. ++ .-..++.+++++.|+||-+..
T Consensus 33 iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~Aa 100 (344)
T 2gn4_A 33 FGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHAAA 100 (344)
T ss_dssp HHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred HHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEECCC
Confidence 489999999999 97 999999998877655431 21 111234566778999999875
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=84.66 E-value=0.52 Score=41.73 Aligned_cols=55 Identities=18% Similarity=0.123 Sum_probs=38.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------CCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-------~~~s~~e~~~~adiVi~~vp 55 (301)
+|+.++..|++.||+|++.+|++++.......++. -..++.++++++|+||-+..
T Consensus 41 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~ 102 (379)
T 2c5a_A 41 IASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA 102 (379)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECce
Confidence 48899999999999999999987654332222221 11234566778999998765
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=84.65 E-value=0.68 Score=39.03 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=27.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 42 IG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~ 72 (281)
T 3ppi_A 42 LGEATVRRLHADGLGVVIADLAAEKGKALAD 72 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 5899999999999999999999988776654
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.65 E-value=0.68 Score=38.93 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=26.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 16 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 46 (264)
T 3tfo_A 16 IGEGIARELGVAGAKILLGARRQARIEAIAT 46 (264)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.60 E-value=0.69 Score=38.68 Aligned_cols=31 Identities=10% Similarity=0.214 Sum_probs=26.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 23 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 53 (264)
T 3ucx_A 23 LGTTLARRCAEQGADLVLAARTVERLEDVAK 53 (264)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHH
Confidence 4899999999999999999999988766543
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=84.55 E-value=0.7 Score=38.68 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=26.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 20 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (265)
T 3lf2_A 20 IGLATVELLLEAGAAVAFCARDGERLRAAE 49 (265)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999998876654
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=84.43 E-value=0.72 Score=38.14 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=26.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 19 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (247)
T 2jah_A 19 IGEATARALAAEGAAVAIAARRVEKLRALG 48 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 489999999999999999999988776554
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=84.40 E-value=0.7 Score=39.05 Aligned_cols=31 Identities=13% Similarity=0.309 Sum_probs=25.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCCh--hhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNC--NVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~--~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++ +..+.+.+
T Consensus 40 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~ 72 (280)
T 3nrc_A 40 IAYGIAKAMHREGAELAFTYVGQFKDRVEKLCA 72 (280)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHG
T ss_pred HHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHH
Confidence 48899999999999999999987 55555544
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=84.22 E-value=0.6 Score=38.78 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=27.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+.+|++++.+.+.+
T Consensus 19 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (250)
T 3nyw_A 19 IGAVIAAGLATDGYRVVLIARSKQNLEKVHD 49 (250)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=84.15 E-value=0.74 Score=38.88 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=26.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+...
T Consensus 23 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 52 (281)
T 3svt_A 23 IGKGVAAGLVAAGASVMIVGRNPDKLAGAV 52 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999998776554
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=84.11 E-value=0.96 Score=37.83 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=25.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 28 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 57 (278)
T 2bgk_A 28 IGETTAKLFVRYGAKVVIADIADDHGQKVC 57 (278)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCChhHHHHHH
Confidence 489999999999999999999987765543
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=83.98 E-value=1.4 Score=36.07 Aligned_cols=30 Identities=30% Similarity=0.298 Sum_probs=25.3
Q ss_pred CcHHHHHHHHhCCCeEEE-EcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAV-HDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~-~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++ .+|++++.+.+.
T Consensus 13 iG~~la~~l~~~G~~v~~~~~r~~~~~~~~~ 43 (244)
T 1edo_A 13 IGKAIALSLGKAGCKVLVNYARSAKAAEEVS 43 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 489999999999999998 589988766553
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=83.91 E-value=1.1 Score=39.07 Aligned_cols=56 Identities=7% Similarity=0.218 Sum_probs=40.4
Q ss_pred cHHHHHHHHhCCC-------eEEEEcCC----hhhHH----HHHhCC------CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLMKAGY-------KMAVHDVN----CNVMK----MFSDMG------VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~~~G~-------~V~~~dr~----~~~~~----~l~~~g------~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
|++++..|+..|+ +|.++|++ +++.+ .+.... +...+++.+++++||+||++...+
T Consensus 18 G~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~aD~Vi~~ag~~ 94 (329)
T 1b8p_A 18 CYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDADVALLVGARP 94 (329)
T ss_dssp HHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTCSEEEECCCCC
T ss_pred HHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCCCEEEEeCCCC
Confidence 7889999998885 89999999 55443 233311 222367889999999999987643
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=83.84 E-value=1.3 Score=39.08 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=38.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHh-cCCEEEEe
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITM 53 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~-~adiVi~~ 53 (301)
+|..+|+.|...|.+|+++|+++++.+...+.|++.. ++.+... .||+++-|
T Consensus 186 VG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~ 238 (355)
T 1c1d_A 186 VGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPC 238 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHh
Confidence 3788999999999999999999876333334465544 5667666 89999854
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.78 E-value=0.79 Score=38.33 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 25 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 54 (267)
T 1iy8_A 25 LGRATAVRLAAEGAKLSLVDVSSEGLEASK 54 (267)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766543
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.59 E-value=0.74 Score=39.03 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=27.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 20 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 50 (280)
T 3tox_A 20 IGRAAALLFAREGAKVVVTARNGNALAELTD 50 (280)
T ss_dssp HHHHHHHHHHHTTCEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988766653
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=83.59 E-value=0.81 Score=38.12 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 19 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (263)
T 3ai3_A 19 IGLAIAEGFAKEGAHIVLVARQVDRLHEAA 48 (263)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 489999999999999999999988766543
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=83.55 E-value=0.81 Score=38.71 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=27.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 17 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 47 (281)
T 3zv4_A 17 LGRALVDRFVAEGARVAVLDKSAERLRELEV 47 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776654
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=83.54 E-value=0.52 Score=44.34 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=42.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC---CCCCCCCHHHH-HhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---GVPTKETPFEV-AEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~---g~~~~~s~~e~-~~~adiVi~~vp~~~ 58 (301)
+|..+|+.|.+.||+|.+.|+|+++++.+... .+.-...++++ ++++|.++++++++.
T Consensus 359 ~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~ 420 (565)
T 4gx0_A 359 IGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDS 420 (565)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHH
T ss_pred HHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCch
Confidence 37889999999999999999999987665310 11222344444 578999999988764
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=83.48 E-value=0.79 Score=39.56 Aligned_cols=54 Identities=11% Similarity=0.109 Sum_probs=36.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHH------HHHh-CC-------CCCCCCHHHHHhcCCEEEEec
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMK------MFSD-MG-------VPTKETPFEVAEASDVVITML 54 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~------~l~~-~g-------~~~~~s~~e~~~~adiVi~~v 54 (301)
+|+.++..|++.||+|.+..|++++.+ .+.. .+ +.-..++.++++++|+||-+.
T Consensus 21 IG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 88 (338)
T 2rh8_A 21 VASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA 88 (338)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeC
Confidence 489999999999999998888765321 1211 11 222245567778888888754
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=83.46 E-value=0.82 Score=38.63 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=26.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 36 IG~aia~~la~~G~~V~~~~r~~~~~~~~~ 65 (279)
T 3sju_A 36 IGLAVARTLAARGIAVYGCARDAKNVSAAV 65 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999998876654
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=83.44 E-value=0.81 Score=38.85 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=28.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+.
T Consensus 28 IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~ 59 (291)
T 3rd5_A 28 LGAVTARELARRGATVIMAVRDTRKGEAAART 59 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 48999999999999999999999988777643
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=83.40 E-value=0.82 Score=38.13 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=25.8
Q ss_pred CcHHHHHHHHhCCCeEEEE-cCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVH-DVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~-dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+. +|++++.+.+.+
T Consensus 16 IG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~ 47 (258)
T 3oid_A 16 VGKAAAIRLAENGYNIVINYARSKKAALETAE 47 (258)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 5899999999999999885 999887765543
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.40 E-value=0.83 Score=38.70 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=26.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 45 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 75 (281)
T 4dry_A 45 VGRGIAQALSAEGYSVVITGRRPDVLDAAAG 75 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4899999999999999999999988766543
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=83.35 E-value=0.83 Score=38.28 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=26.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+...
T Consensus 22 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (267)
T 3t4x_A 22 IGKAIATSLVAEGANVLINGRREENVNETI 51 (267)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776554
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=83.35 E-value=1 Score=38.89 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=39.0
Q ss_pred CcHHHHHHHHhC-CCeEEEEcCChhhHHHHHhC-CC-----CCCC---CHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDM-GV-----PTKE---TPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~-g~-----~~~~---s~~e~~~~adiVi~~vp 55 (301)
+|+.++..|++. ||+|++.+|++++.+.+... ++ ...+ .+.++++++|+||-+..
T Consensus 12 iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~ 76 (345)
T 2bll_A 12 IGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 76 (345)
T ss_dssp HHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEccc
Confidence 488999999998 89999999998876554322 21 1221 24556778999998753
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.35 E-value=1.7 Score=36.67 Aligned_cols=30 Identities=17% Similarity=0.434 Sum_probs=24.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcC-ChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDV-NCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr-~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+| ++++.+.+.
T Consensus 41 IG~aia~~la~~G~~V~~~~~~~~~~~~~~~ 71 (280)
T 4da9_A 41 IGLGIARALAASGFDIAITGIGDAEGVAPVI 71 (280)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH
Confidence 589999999999999999985 666655443
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=83.32 E-value=0.17 Score=41.75 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=23.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~ 26 (301)
+|..+++.|++.|++|++.+|++++.
T Consensus 13 iG~~l~~~L~~~g~~V~~~~r~~~~~ 38 (255)
T 2dkn_A 13 IGAALKELLARAGHTVIGIDRGQADI 38 (255)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSSSSE
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhHc
Confidence 48899999999999999999987653
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.26 E-value=0.89 Score=37.69 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=26.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 18 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (253)
T 1hxh_A 18 VGLEVVKLLLGEGAKVAFSDINEAAGQQLA 47 (253)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 489999999999999999999988776554
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.25 E-value=1.1 Score=37.15 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=24.1
Q ss_pred CcHHHHHHHHhCC---CeEEEEcCChhhHHH
Q 022170 1 MGFRMASNLMKAG---YKMAVHDVNCNVMKM 28 (301)
Q Consensus 1 mG~~lA~~L~~~G---~~V~~~dr~~~~~~~ 28 (301)
+|.++|+.|++.| ++|++.+|++++.+.
T Consensus 33 IG~~la~~L~~~G~~~~~V~~~~r~~~~~~~ 63 (267)
T 1sny_A 33 LGLGLVKALLNLPQPPQHLFTTCRNREQAKE 63 (267)
T ss_dssp HHHHHHHHHHTSSSCCSEEEEEESCTTSCHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEEecChhhhHH
Confidence 4899999999999 999999999876543
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=83.23 E-value=0.84 Score=38.61 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=27.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 41 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 71 (277)
T 3gvc_A 41 IGLAVARRLADEGCHVLCADIDGDAADAAAT 71 (277)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=83.14 E-value=0.87 Score=37.86 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=25.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|.++|+.|++.|++|++.+|++++.+.+
T Consensus 26 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 54 (260)
T 2zat_A 26 IGLAIARRLAQDGAHVVVSSRKQENVDRT 54 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 48999999999999999999998876554
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=83.11 E-value=0.94 Score=41.72 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=52.3
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhh-cCCCccccCCCCCCCe
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY-NGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~-~~~~~~l~~~~~~~~~ 81 (301)
..++..|.+.|.+|.+||..-.. + .....+.++.++++++|+|++++.++. .++.- ......+. .+.+
T Consensus 376 ~~i~~~L~~~g~~V~~~DP~~~~---~--~~~~~~~~~~~~~~~ad~vvi~t~~~~--f~~~d~~~~~~~~~----~~~~ 444 (478)
T 3g79_A 376 EPYRDLCLKAGASVMVHDPYVVN---Y--PGVEISDNLEEVVRNADAIVVLAGHSA--YSSLKADWAKKVSA----KANP 444 (478)
T ss_dssp HHHHHHHHHHTCEEEEECSSCCC---B--TTBCEESCHHHHHTTCSEEEECSCCHH--HHSCCHHHHHHHHC----CSSC
T ss_pred HHHHHHHHHCCCEEEEECCCccc---c--cCcceecCHHHHHhcCCEEEEecCCHH--HHhhhHHHHHHHhc----cCCC
Confidence 45788899999999999965442 1 123456789999999999999999765 44321 11111121 0146
Q ss_pred EEEEeCCCCH
Q 022170 82 LLIDSSTIDP 91 (301)
Q Consensus 82 ivid~st~~p 91 (301)
+|+|.-++..
T Consensus 445 ~i~D~rn~~~ 454 (478)
T 3g79_A 445 VIIDGRNVIE 454 (478)
T ss_dssp EEEESSSCSC
T ss_pred EEEECCCCCC
Confidence 9999988764
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=83.10 E-value=0.88 Score=37.88 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 19 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (260)
T 2z1n_A 19 LGFASALELARNGARLLLFSRNREKLEAAA 48 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 489999999999999999999988766553
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=83.05 E-value=0.7 Score=38.48 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=26.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 24 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 53 (256)
T 3gaf_A 24 IGRAIAGTFAKAGASVVVTDLKSEGAEAVA 53 (256)
T ss_dssp HHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776654
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=82.96 E-value=0.9 Score=37.43 Aligned_cols=30 Identities=10% Similarity=0.324 Sum_probs=26.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 23 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 52 (254)
T 2wsb_A 23 IGLEICRAFAASGARLILIDREAAALDRAA 52 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 489999999999999999999988766553
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=82.93 E-value=0.9 Score=37.81 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=25.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|.++|+.|++.|++|++.+|++++.+.+
T Consensus 21 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 49 (260)
T 2ae2_A 21 IGYGIVEELASLGASVYTCSRNQKELNDC 49 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 48999999999999999999998876554
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=82.90 E-value=0.37 Score=39.96 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=23.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMK 27 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~ 27 (301)
+|.++++.|++.|++|++.+|++++.+
T Consensus 27 IG~~ia~~l~~~G~~V~~~~r~~~~~~ 53 (247)
T 1uzm_A 27 IGLAIAQRLAADGHKVAVTHRGSGAPK 53 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence 489999999999999999999876543
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.89 E-value=0.9 Score=37.39 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=26.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 17 IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 46 (247)
T 3lyl_A 17 IGFEVAHALASKGATVVGTATSQASAEKFE 46 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 489999999999999999999998776654
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=82.86 E-value=0.82 Score=37.94 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=25.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|.++|+.|++.|++|++.+|++++.+.+
T Consensus 13 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 41 (254)
T 1zmt_A 13 GGMGSALRLSEAGHTVACHDESFKQKDEL 41 (254)
T ss_dssp THHHHHHHHHHTTCEEEECCGGGGSHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 68999999999999999999998776554
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=82.84 E-value=1.7 Score=39.97 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=52.5
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhH---HHHHh-C-------CCCCCCCHHHHHhcCCEEEEecCCCccchhhh-hcCCCc
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNVM---KMFSD-M-------GVPTKETPFEVAEASDVVITMLPSSSHQVLDV-YNGPNG 70 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~~---~~l~~-~-------g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v-~~~~~~ 70 (301)
..++..|.+.|.+|.+||..-... +.... . .+..+.++.++++++|+|++++.++. .+++ +.....
T Consensus 358 ~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~~--f~~~~~~~~~~ 435 (481)
T 2o3j_A 358 IHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAARGAHAIVVLTEWDE--FVELNYSQIHN 435 (481)
T ss_dssp HHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHTTCSEEEECSCCGG--GTTSCHHHHHH
T ss_pred HHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHcCCCEEEEcCCcHH--hhccCHHHHHH
Confidence 357889999999999999753221 11111 1 13445788899999999999999765 4432 111111
Q ss_pred cccCCCCCCCeEEEEeCCCCH
Q 022170 71 LLQGGNSVRPQLLIDSSTIDP 91 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~~p 91 (301)
.+ .+.++|+|.-++..
T Consensus 436 ~~-----~~~~~i~D~r~~~~ 451 (481)
T 2o3j_A 436 DM-----QHPAAIFDGRLILD 451 (481)
T ss_dssp HS-----CSSCEEEESSSCSC
T ss_pred hc-----CCCCEEEECCCCCC
Confidence 11 23358999988764
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=82.82 E-value=0.91 Score=37.85 Aligned_cols=30 Identities=13% Similarity=0.286 Sum_probs=26.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 41 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 70 (262)
T 3rkr_A 41 IGAAIARKLGSLGARVVLTARDVEKLRAVE 70 (262)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 489999999999999999999998876654
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.82 E-value=0.9 Score=38.15 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=26.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (278)
T 1spx_A 18 IGRATAVLFAREGAKVTITGRHAERLEETR 47 (278)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 489999999999999999999988776554
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.79 E-value=0.92 Score=37.84 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 19 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (262)
T 1zem_A 19 IGLATALRLAEEGTAIALLDMNREALEKAE 48 (262)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766543
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.78 E-value=0.93 Score=37.08 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=26.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 19 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 1cyd_A 19 IGRDTVKALHASGAKVVAVTRTNSDLVSLAK 49 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4899999999999999999999887766544
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.77 E-value=0.92 Score=38.05 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 33 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 62 (267)
T 1vl8_A 33 LGFGIAQGLAEAGCSVVVASRNLEEASEAA 62 (267)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988765543
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.75 E-value=0.92 Score=37.74 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 17 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 46 (260)
T 2qq5_A 17 IGRGIALQLCKAGATVYITGRHLDTLRVVA 46 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766553
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.73 E-value=0.91 Score=38.27 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=26.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (280)
T 1xkq_A 18 IGRTTAILFAQEGANVTITGRSSERLEETR 47 (280)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 489999999999999999999988776553
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=82.63 E-value=1.6 Score=40.38 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=37.5
Q ss_pred cH-HHHHHHHhCCCeEEEEcCChh-hHHHHHhCCCCCCC-CHHHHHhcCCEEEEe
Q 022170 2 GF-RMASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKE-TPFEVAEASDVVITM 53 (301)
Q Consensus 2 G~-~lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~-s~~e~~~~adiVi~~ 53 (301)
|. ++|+.|.+.|++|+++|+.+. ..+.+.+.|+.+.. ...+.+.++|+|+.+
T Consensus 34 G~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~S 88 (494)
T 4hv4_A 34 GMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVS 88 (494)
T ss_dssp THHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEEC
T ss_pred hHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEEC
Confidence 55 489999999999999997543 45677777876532 222345679999986
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.56 E-value=0.94 Score=38.06 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=25.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 33 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 62 (273)
T 1ae1_A 33 IGYAIVEELAGLGARVYTCSRNEKELDECL 62 (273)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 489999999999999999999988765543
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=82.38 E-value=1.3 Score=37.26 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=20.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVN 22 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~ 22 (301)
+|.++|+.|++.|++|++.+|+
T Consensus 25 IG~~ia~~l~~~G~~V~~~~r~ 46 (278)
T 3sx2_A 25 QGRAHAVRLAADGADIIAVDLC 46 (278)
T ss_dssp HHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHCCCeEEEEecc
Confidence 5899999999999999999987
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=82.29 E-value=1.4 Score=38.17 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=37.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChh----hHHHHHh-------CC-------CCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCN----VMKMFSD-------MG-------VPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~----~~~~l~~-------~g-------~~~~~s~~e~~~~adiVi~~vp 55 (301)
+|+.++..|.+.||+|++.+|++. ..+.+.. .+ +.-..++.++++++|+||-|..
T Consensus 37 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~ 109 (351)
T 3ruf_A 37 IGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAA 109 (351)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCEEEECCc
Confidence 489999999999999999998654 2333332 22 1112234566778999998875
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.29 E-value=1.3 Score=37.34 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=20.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVN 22 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~ 22 (301)
+|.++|+.|++.|++|++.+|+
T Consensus 27 IG~a~a~~la~~G~~V~~~~r~ 48 (280)
T 3pgx_A 27 QGRSHAVRLAAEGADIIACDIC 48 (280)
T ss_dssp HHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHCCCEEEEEecc
Confidence 5899999999999999999983
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=82.22 E-value=0.96 Score=38.61 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=26.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 53 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 83 (293)
T 3rih_A 53 IGRGIATVFARAGANVAVAARSPRELSSVTA 83 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999887766543
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=82.19 E-value=1.6 Score=40.06 Aligned_cols=82 Identities=13% Similarity=0.268 Sum_probs=52.4
Q ss_pred HHHHHHHHhCCCeEEEEcCCh--hhHHHHHh-----------CCCCCCCCHHHHHhcCCEEEEecCCCccchhhh-hcCC
Q 022170 3 FRMASNLMKAGYKMAVHDVNC--NVMKMFSD-----------MGVPTKETPFEVAEASDVVITMLPSSSHQVLDV-YNGP 68 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~--~~~~~l~~-----------~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v-~~~~ 68 (301)
..++..|.+.|.+|.+||..- +....... .++..+.++.++++++|+|++++.++. .+++ +...
T Consensus 352 ~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~~--f~~~~~~~~ 429 (467)
T 2q3e_A 352 IYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDM--FKELDYERI 429 (467)
T ss_dssp HHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHHHTTCSEEEECSCCGG--GGGSCHHHH
T ss_pred HHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHHHhCCcEEEEecCChh--hhcCCHHHH
Confidence 467889999999999999753 22211110 024456788899999999999999865 4543 1111
Q ss_pred CccccCCCCCCCeEEEEeCCCCH
Q 022170 69 NGLLQGGNSVRPQLLIDSSTIDP 91 (301)
Q Consensus 69 ~~~l~~~~~~~~~ivid~st~~p 91 (301)
...+ ....+|+|.-++..
T Consensus 430 ~~~~-----~~~~~i~D~r~~~~ 447 (467)
T 2q3e_A 430 HKKM-----LKPAFIFDGRRVLD 447 (467)
T ss_dssp HHHS-----CSSCEEEESSCTTT
T ss_pred HHhc-----CCCCEEEeCCCcCC
Confidence 1112 22346999988754
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=82.13 E-value=0.41 Score=40.41 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=36.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH---hCCCCCCCCHHHHHhc-CCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS---DMGVPTKETPFEVAEA-SDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~---~~g~~~~~s~~e~~~~-adiVi~~vp 55 (301)
+|+.++..|.+.||+|++.+|++++...-. ...+.-..++.+++++ +|+||-+..
T Consensus 14 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286)
T 3gpi_A 14 LGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA 72 (286)
T ss_dssp HHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence 489999999999999999999876532000 0011112234445555 999998764
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.00 E-value=1 Score=37.92 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=26.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 41 IG~aia~~L~~~G~~V~~~~r~~~~~~~~~ 70 (276)
T 2b4q_A 41 IGQMIAQGLLEAGARVFICARDAEACADTA 70 (276)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766553
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=81.94 E-value=1 Score=37.52 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=26.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 35 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 64 (266)
T 3o38_A 35 IGSTTARRALLEGADVVISDYHERRLGETR 64 (266)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 488999999999999999999988776554
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.92 E-value=1 Score=38.22 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=27.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+.+|++++.+.+.+
T Consensus 40 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 70 (283)
T 3v8b_A 40 IGRATALALAADGVTVGALGRTRTEVEEVAD 70 (283)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988766654
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=81.84 E-value=1.1 Score=36.78 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=26.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 19 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 3d3w_A 19 IGRGTVQALHATGARVVAVSRTQADLDSLVR 49 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4899999999999999999999887766543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.77 E-value=1 Score=38.23 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=26.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+...
T Consensus 24 IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~ 53 (311)
T 3o26_A 24 IGFEICKQLSSNGIMVVLTCRDVTKGHEAV 53 (311)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999998765543
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=81.73 E-value=0.61 Score=39.07 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=53.1
Q ss_pred CcHHHHHHHHhCCCeE-EEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V-~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||+.+++. . ++++ .+|+ ++...+ |..++++++++++++|+|+.|-+ ..+ +++... .++. .
T Consensus 23 IG~~v~~~--~-~leLv~v~~---~k~gel---gv~a~~d~d~lla~pD~VVe~A~-~~a-v~e~~~---~iL~-----a 83 (253)
T 1j5p_A 23 IGKKLVEL--G-NFEKIYAYD---RISKDI---PGVVRLDEFQVPSDVSTVVECAS-PEA-VKEYSL---QILK-----N 83 (253)
T ss_dssp HHHHHHHH--S-CCSEEEEEC---SSCCCC---SSSEECSSCCCCTTCCEEEECSC-HHH-HHHHHH---HHTT-----S
T ss_pred HHHHHHhc--C-CcEEEEEEe---cccccc---CceeeCCHHHHhhCCCEEEECCC-HHH-HHHHHH---HHHH-----C
Confidence 46666665 4 7775 5677 444434 77777889888889999999987 444 676443 2553 3
Q ss_pred CeEEEEeCCC---CHHHHHHHHHHHh
Q 022170 80 PQLLIDSSTI---DPQTSRNISAAVS 102 (301)
Q Consensus 80 ~~ivid~st~---~p~~~~~~~~~~~ 102 (301)
|+-++-+|.. .++..+++.+..+
T Consensus 84 G~dvv~~S~gaLad~~l~~~L~~aA~ 109 (253)
T 1j5p_A 84 PVNYIIISTSAFADEVFRERFFSELK 109 (253)
T ss_dssp SSEEEECCGGGGGSHHHHHHHHHHHH
T ss_pred CCCEEEcChhhhcCHHHHHHHHHHHH
Confidence 5566666643 5555556655554
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=81.63 E-value=2.4 Score=38.58 Aligned_cols=55 Identities=18% Similarity=0.358 Sum_probs=39.4
Q ss_pred CcHHHHHHHHh----------CCCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHHh--cCCEEEEecCC
Q 022170 1 MGFRMASNLMK----------AGYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~----------~G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adiVi~~vp~ 56 (301)
||+.++..|.+ .+.+|. ++||++++.+.+. .+...+++++++++ +.|+|+.|+|+
T Consensus 21 VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~-~~~~~~~d~~ell~d~diDvVve~tp~ 88 (444)
T 3mtj_A 21 VGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALA-GGLPLTTNPFDVVDDPEIDIVVELIGG 88 (444)
T ss_dssp HHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHH-TTCCEESCTHHHHTCTTCCEEEECCCS
T ss_pred HHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhc-ccCcccCCHHHHhcCCCCCEEEEcCCC
Confidence 35666665543 234544 6799999887663 35677889999986 57999999996
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.53 E-value=0.87 Score=37.54 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=26.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (246)
T 2ag5_A 18 IGQAAALAFAREGAKVIATDINESKLQELE 47 (246)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHGGGG
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 489999999999999999999988776554
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=81.43 E-value=1.1 Score=38.93 Aligned_cols=54 Identities=9% Similarity=-0.001 Sum_probs=37.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH--HhCCCCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF--SDMGVPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l--~~~g~~~~~s~~e~~~~adiVi~~vp 55 (301)
+|+.++..|++.||+|++.+|+++. ..+ ....+.-..++.++++++|+||-+..
T Consensus 31 iG~~l~~~L~~~G~~V~~~~r~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~ 86 (347)
T 4id9_A 31 VGRAVVAALRTQGRTVRGFDLRPSG-TGGEEVVGSLEDGQALSDAIMGVSAVLHLGA 86 (347)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCCS-SCCSEEESCTTCHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCCC-CCccEEecCcCCHHHHHHHHhCCCEEEECCc
Confidence 4899999999999999999998764 000 00011112245567789999998764
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=81.42 E-value=1.1 Score=37.58 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=25.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcC-ChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDV-NCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr-~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+| ++++.+.+.
T Consensus 23 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 53 (276)
T 1mxh_A 23 IGHSIAVRLHQQGFRVVVHYRHSEGAAQRLV 53 (276)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChHHHHHHH
Confidence 489999999999999999999 887766553
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=81.38 E-value=1.1 Score=36.73 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=26.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 14 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 43 (250)
T 2cfc_A 14 NGLAIATRFLARGDRVAALDLSAETLEETA 43 (250)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 489999999999999999999988776554
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=81.19 E-value=1.6 Score=40.61 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=36.3
Q ss_pred HHHHHHHhCCCeEEEEcCCh--hhHHHHHhCCCCCC--CCHHHHHhcCCEEEEe
Q 022170 4 RMASNLMKAGYKMAVHDVNC--NVMKMFSDMGVPTK--ETPFEVAEASDVVITM 53 (301)
Q Consensus 4 ~lA~~L~~~G~~V~~~dr~~--~~~~~l~~~g~~~~--~s~~e~~~~adiVi~~ 53 (301)
++|+.|.+.|++|+++|++. ...+.|.+.|+.+. .++.+...++|+|+.+
T Consensus 34 ~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~S 87 (524)
T 3hn7_A 34 SLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVG 87 (524)
T ss_dssp HHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEEC
T ss_pred HHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEEC
Confidence 46888899999999999763 34567888887654 2344444578999985
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=81.15 E-value=3 Score=33.97 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=23.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNV 25 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~ 25 (301)
+|.++|+.|++.|++|.+.+|++++
T Consensus 14 iG~~~a~~l~~~G~~V~~~~r~~~~ 38 (239)
T 2ekp_A 14 IGRAIAEALVARGYRVAIASRNPEE 38 (239)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 4899999999999999999999876
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=81.11 E-value=1.5 Score=37.02 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=20.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCCh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNC 23 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~ 23 (301)
+|.++|+.|++.|++|++.+|++
T Consensus 23 IG~aia~~la~~G~~V~~~~~~~ 45 (286)
T 3uve_A 23 QGRSHAVRLAQEGADIIAVDICK 45 (286)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCS
T ss_pred HHHHHHHHHHHCCCeEEEEeccc
Confidence 58999999999999999999873
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=81.10 E-value=1.1 Score=37.65 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=25.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|.++|+.|++.|++|++.+|++++.+.+
T Consensus 34 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 62 (277)
T 2rhc_B 34 IGLEIARRLGKEGLRVFVCARGEEGLRTT 62 (277)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 48999999999999999999998876554
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.04 E-value=1.1 Score=38.17 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 38 IG~aia~~L~~~G~~V~~~~r~~~~~~~~~ 67 (297)
T 1xhl_A 38 IGRSAAVIFAKEGAQVTITGRNEDRLEETK 67 (297)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 489999999999999999999988766543
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=81.00 E-value=1 Score=38.39 Aligned_cols=54 Identities=9% Similarity=0.215 Sum_probs=34.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcC-Chhh---HHHHHhC------------CCCCCCCHHHHHhcCCEEEEec
Q 022170 1 MGFRMASNLMKAGYKMAVHDV-NCNV---MKMFSDM------------GVPTKETPFEVAEASDVVITML 54 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr-~~~~---~~~l~~~------------g~~~~~s~~e~~~~adiVi~~v 54 (301)
+|+.++..|++.||+|++..| +++. ...+.+. .+.-..++.++++++|+||-+.
T Consensus 13 iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A 82 (322)
T 2p4h_X 13 LGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFHTA 82 (322)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEEcC
Confidence 489999999999999999888 6532 2111110 1222235567778899998875
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.97 E-value=1.2 Score=36.89 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=27.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 19 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (264)
T 2pd6_A 19 IGRAVSVRLAGEGATVAACDLDRAAAQETVR 49 (264)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 4899999999999999999999988776654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.94 E-value=1.2 Score=37.22 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=25.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|.++++.|++.|++|++.+|++++.+.+
T Consensus 19 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 47 (267)
T 2gdz_A 19 IGRAFAEALLLKGAKVALVDWNLEAGVQC 47 (267)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 48999999999999999999998876544
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=80.85 E-value=0.86 Score=39.70 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=37.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----CCCC-----C--CCCHHHHHhc--CCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----MGVP-----T--KETPFEVAEA--SDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----~g~~-----~--~~s~~e~~~~--adiVi~~vp 55 (301)
+|+.++..|++.||+|++.+|++++...+.+ .++. . ..++.++++. .|+||-+..
T Consensus 21 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~ 89 (357)
T 1rkx_A 21 KGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHMAA 89 (357)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred HHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEECCC
Confidence 4899999999999999999998765443322 1211 1 1133455554 799998875
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=80.82 E-value=1.1 Score=37.72 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|++.+|+.++.+...
T Consensus 39 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 68 (277)
T 4fc7_A 39 IGFRIAEIFMRHGCHTVIASRSLPRVLTAA 68 (277)
T ss_dssp HHHHHHHHHHTTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988765543
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.81 E-value=1.5 Score=36.80 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVN 22 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~ 22 (301)
+|.++|+.|++.|++|++.+|+
T Consensus 22 IG~~ia~~l~~~G~~V~~~~~~ 43 (287)
T 3pxx_A 22 QGRSHAVKLAEEGADIILFDIC 43 (287)
T ss_dssp HHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHCCCeEEEEccc
Confidence 5899999999999999999987
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=80.75 E-value=0.24 Score=41.11 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=23.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~ 26 (301)
+|.++|+.|++.|++|++.+|++++.
T Consensus 13 IG~~~a~~l~~~G~~V~~~~r~~~~~ 38 (257)
T 1fjh_A 13 IGAATRKVLEAAGHQIVGIDIRDAEV 38 (257)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSSSSE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhh
Confidence 48999999999999999999987654
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=80.71 E-value=2.4 Score=37.06 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=49.1
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhHHHHHh-------------------CCCCCCCCHHHHHhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-------------------MGVPTKETPFEVAEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~-------------------~g~~~~~s~~e~~~~adiVi~~vp~~~~ 59 (301)
||..+++.|.++ +++|. +.+++++....+.. .++.+..++.+...++|+||.|+|...
T Consensus 12 iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDvV~~atp~~~- 90 (337)
T 1cf2_P 12 VGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIVIDCTPEGI- 90 (337)
T ss_dssp THHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEEEECCSTTH-
T ss_pred HHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCEEEECCCchh-
Confidence 688899988874 45654 45777654433322 233344467777789999999999654
Q ss_pred chhhhhcCCCccccCCCCCCCeEEEEeCCCC
Q 022170 60 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 90 (301)
Q Consensus 60 ~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 90 (301)
..+... ..++ .|+.||+.+...
T Consensus 91 -~~~~a~---~~l~-----aG~~VId~sp~~ 112 (337)
T 1cf2_P 91 -GAKNLK---MYKE-----KGIKAIFQGGEK 112 (337)
T ss_dssp -HHHHHH---HHHH-----HTCCEEECTTSC
T ss_pred -hHHHHH---HHHH-----cCCEEEEecCCC
Confidence 233332 1232 234577777654
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=80.68 E-value=1.6 Score=35.73 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=23.9
Q ss_pred CcHHHHHHHHhCCCeEEEE-cCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVH-DVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~-dr~~~~~~~l 29 (301)
+|..+++.|++.|++|++. +|+++..+.+
T Consensus 17 iG~~~a~~l~~~G~~V~~~~~r~~~~~~~~ 46 (247)
T 2hq1_A 17 LGKAIAWKLGNMGANIVLNGSPASTSLDAT 46 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCSHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCcCHHHHHHH
Confidence 4889999999999999988 7777665544
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=80.67 E-value=1.2 Score=38.54 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=27.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 20 IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~ 50 (319)
T 3ioy_A 20 VGIGLVRQLLNQGCKVAIADIRQDSIDKALA 50 (319)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4899999999999999999999988766543
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=80.62 E-value=1.3 Score=36.44 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=26.8
Q ss_pred CcHHHHHHHHhCCCeEEEE-c--CChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVH-D--VNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~-d--r~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++. + |++++.+.+.+
T Consensus 13 IG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~ 46 (244)
T 1zmo_A 13 AGPAAVEALTQDGYTVVCHDASFADAAERQRFES 46 (244)
T ss_dssp THHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHH
Confidence 6899999999999999998 7 99888776644
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=80.60 E-value=0.55 Score=40.60 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=35.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh--CC-------CCCCCCHHHHHh--cCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD--MG-------VPTKETPFEVAE--ASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~--~g-------~~~~~s~~e~~~--~adiVi~~vp 55 (301)
+|+.++..|++.||+|++.+|++.....+.+ .+ +.-..++.++++ +.|+||-+..
T Consensus 32 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~ 97 (330)
T 2pzm_A 32 LGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAA 97 (330)
T ss_dssp HHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred HHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 4899999999999999999997543221111 11 111123445666 7888888765
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=80.59 E-value=1.2 Score=36.91 Aligned_cols=29 Identities=14% Similarity=0.335 Sum_probs=25.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhh-HHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNV-MKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~-~~~l 29 (301)
+|.++|+.|++.|++|++.+|++++ .+.+
T Consensus 16 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 45 (260)
T 1x1t_A 16 IGLGIATALAAQGADIVLNGFGDAAEIEKV 45 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCCcchHHHHH
Confidence 4899999999999999999999876 5544
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=80.41 E-value=5.3 Score=35.12 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=25.6
Q ss_pred cHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCCC
Q 022170 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 35 (301)
Q Consensus 2 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~ 35 (301)
|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus 208 G~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~ 242 (376)
T 1e3i_A 208 GLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT 242 (376)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc
Confidence 5555555556788 799999999998888777753
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=80.37 E-value=0.53 Score=39.25 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~ 26 (301)
+|.++|+.|++.|++|++.+|++++.
T Consensus 33 IG~aia~~l~~~G~~V~~~~r~~~~~ 58 (253)
T 2nm0_A 33 IGLAIARAFADAGDKVAITYRSGEPP 58 (253)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHhh
Confidence 48999999999999999999987643
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=80.37 E-value=0.95 Score=38.00 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=24.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
+|.++++.|++.|++|++.+|++++.+.+
T Consensus 46 IG~~la~~L~~~G~~V~~~~r~~~~~~~~ 74 (279)
T 3ctm_A 46 IGWAVAEAYAQAGADVAIWYNSHPADEKA 74 (279)
T ss_dssp HHHHHHHHHHHHTCEEEEEESSSCCHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 48999999999999999999987765544
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=80.33 E-value=2.7 Score=36.63 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=41.7
Q ss_pred CcHHHHHHHHhCC-CeEE-EEcCChhhHHHHHh-CC------------------CCCCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAG-YKMA-VHDVNCNVMKMFSD-MG------------------VPTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~-~~dr~~~~~~~l~~-~g------------------~~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||..+++.|.++. .+|. +.|++++....+.+ .| +....++++++.++|+|++|+|...
T Consensus 13 iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV~~aTp~~~ 91 (334)
T 2czc_A 13 IGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGI 91 (334)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEEEECCSTTH
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEEEECCCccc
Confidence 5778888887753 4654 56888777765543 23 2445688888889999999999764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 301 | ||||
| d3cuma1 | 134 | a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydroge | 4e-32 | |
| d1vpda2 | 161 | c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase | 5e-31 | |
| d3cuma2 | 162 | c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase | 1e-25 | |
| d1vpda1 | 133 | a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydroge | 6e-25 | |
| d2cvza1 | 132 | a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydroge | 4e-24 | |
| d2cvza2 | 156 | c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase | 7e-19 | |
| d1pgja2 | 178 | c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase | 7e-17 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 3e-15 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 3e-13 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 2e-12 | |
| d2pv7a2 | 152 | c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA { | 6e-10 | |
| d2pgda2 | 176 | c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase | 1e-09 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 2e-06 |
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 114 bits (285), Expect = 4e-32
Identities = 57/129 (44%), Positives = 80/129 (62%)
Query: 166 AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVP 225
G G AK+CNN +AV M+G +EA+ LG + G+ A L +I+ SS W+ + YNP P
Sbjct: 2 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWP 61
Query: 226 GVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 285
GVME PASR+Y GGF ++LMAKDL LA +A+ P+ S A +Y L + G+ +
Sbjct: 62 GVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAER 121
Query: 286 DFSCVFQHY 294
DFS V + +
Sbjct: 122 DFSVVQKLF 130
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 112 bits (280), Expect = 5e-31
Identities = 63/164 (38%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG M+ NL+KAGY + V D N + G T T +AE DV+ITMLP+S
Sbjct: 11 MGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNS-PH 69
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V +V G NG+++G +LID S+I P SR I + LK K MLD
Sbjct: 70 VKEVALGENGIIEGAKPGT--VLIDMSSIAPLASREI-----SDALKAK-----GVEMLD 117
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 164
APVSGG A GTL+ MVGG + + L +M + ++ G
Sbjct: 118 APVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTG 161
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 98.0 bits (243), Expect = 1e-25
Identities = 65/164 (39%), Positives = 92/164 (56%), Gaps = 13/164 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG MA+NL+KAGY + V D+ + + G + + + +DVVI+MLP+S H
Sbjct: 12 MGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHV 71
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+Y +GLL L+++ STI P ++R I AA +E+ MLD
Sbjct: 72 E-GLYLDDDGLLAHIAP--GTLVLECSTIAPTSARKIHAA-----ARER-----GLAMLD 118
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 164
APVSGG A AGTLTFMVGG +A + A+PLF +MG+N + G
Sbjct: 119 APVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHAG 162
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 95.1 bits (236), Expect = 6e-25
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPG 226
G G K+ N + +A+++ +SEALTL G++ + + + A D+ P+
Sbjct: 3 GAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVM 62
Query: 227 VMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 286
P GF L KDL AL ++ VG PLT+ ++ L +GH + D
Sbjct: 63 DRNFKP-------GFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDD 115
Query: 287 FSCVFQHY 294
S + +Y
Sbjct: 116 HSALACYY 123
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 132 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 92.8 bits (230), Expect = 4e-24
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPG 226
G G A K NN +AV++ E L G+SA +++N+SS R ++++ P
Sbjct: 2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRV 61
Query: 227 VMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 286
+ R + FA L+ KDL +A+ PL A+++Y D
Sbjct: 62 LT------RAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDAD 115
Query: 287 FSCVFQHY 294
+
Sbjct: 116 HVEALRLL 123
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 79.6 bits (195), Expect = 7e-19
Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 19/164 (11%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG+ MA +L + + + ++ + G VI ++ +
Sbjct: 11 MGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGSEAVPLERVA---EARVIFTCLPTTRE 67
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
V +V +D+++ +P+ SR ++ L+EK LD
Sbjct: 68 VYEVAEALYP-----YLREGTYWVDATSGEPEASRRLAER-----LREK-----GVTYLD 112
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 164
APVSGG AEAGTLT M+GG E+A + +P L+ K ++ G
Sbjct: 113 APVSGGTSGAEAGTLTVMLGGPEEAVERVRPF-LAYAKKVVHVG 155
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Score = 74.7 bits (182), Expect = 7e-17
Identities = 24/173 (13%), Positives = 51/173 (29%), Gaps = 10/173 (5%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG +A N+ + G+K+AV + + + F A + +
Sbjct: 12 MGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRK 71
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
L + ++ +D + + + ++ L
Sbjct: 72 ALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAH-----FKDQGRRAQQLEAAGLRFLG 126
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI----YCGGAGNG 169
+SGG A G F GG+ ++ +P+ + G+G
Sbjct: 127 MGISGGEEGARKGP-AFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG 178
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 69.5 bits (169), Expect = 3e-15
Identities = 27/164 (16%), Positives = 47/164 (28%), Gaps = 25/164 (15%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
+ +AS L G ++ + + V ET E + VVI+ +
Sbjct: 11 VAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVAL 70
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
G + + +D + I P+T R S+ + +D
Sbjct: 71 ---------GAARRAGRHVRGIYVDINNISPETVRMASSLIEKG------------GFVD 109
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 164
A + G V A G + + G N G
Sbjct: 110 AAIMGSVRRKGADIRIIASGRDAEEFMKLNR----YGLNIEVRG 149
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 63.9 bits (154), Expect = 3e-13
Identities = 13/164 (7%), Positives = 40/164 (24%), Gaps = 23/164 (14%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
+ L + + + + +++ T + E + VV ++P +
Sbjct: 10 LTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIK 69
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+ ++ ++ + + + KK +
Sbjct: 70 TV-----------------------ANHLNLGDAVLVHCSGFLSSEIFKKSGRASIHPNF 106
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 164
+ S + F + G E K + +
Sbjct: 107 SFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIP 150
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 63.4 bits (154), Expect = 2e-12
Identities = 21/131 (16%), Positives = 38/131 (29%), Gaps = 17/131 (12%)
Query: 31 DMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 90
D+G+ E E +D+VIT LP + D+ + G ++ + TI
Sbjct: 126 DVGLKVTSDDREAVEGADIVITWLPKGNK-QPDIIKKFADAIPEG-----AIVTHACTIP 179
Query: 91 PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 150
I L + + + + G V + SE+A
Sbjct: 180 TTKFAKIFKD-----LGRE------DLNITSYHPGCVPEMKGQVYIAEGYASEEAVNKLY 228
Query: 151 PLFLSMGKNTI 161
+
Sbjct: 229 EIGKIARGKAF 239
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Score = 54.5 bits (130), Expect = 6e-10
Identities = 17/160 (10%), Positives = 41/160 (25%), Gaps = 33/160 (20%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
+G A L +GY +++ D + + + + + P +
Sbjct: 21 LGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTEN 80
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
+L D +++ + + V+
Sbjct: 81 MLL--------------------ADLTSVKREPLAKMLEV------------HTGAVLGL 108
Query: 121 APVSGGVLAAEAG-TLTFMVGGSEDAYQAAKPLFLSMGKN 159
P+ G +A+ A + G + Y+ G
Sbjct: 109 HPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAK 148
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 54.2 bits (129), Expect = 1e-09
Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 9/162 (5%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 60
MG + N+ G+ + + + + F + + S + +
Sbjct: 13 MGQNLILNMNDHGFVVCAFNRTVSKVDDFLANE---AKGTKVLGAHSLEEMVSKLKKPRR 69
Query: 61 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 120
++ + + + P L I ID S + + + + + + +
Sbjct: 70 IILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEY-----RDTMRRCRDLKDKGILFVG 124
Query: 121 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIY 162
+ VSGG A G + M GG+++A+ K +F +
Sbjct: 125 SGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGIAAKVGT 165
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 45.2 bits (105), Expect = 2e-06
Identities = 16/171 (9%), Positives = 43/171 (25%), Gaps = 24/171 (14%)
Query: 1 MGFRMASNLMKAGYKMAVHDVN-CNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH 59
+G +A +L + G+ + K V + + + ++ P
Sbjct: 11 IGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLI 70
Query: 60 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 119
P+ ++ D +++ + + + +
Sbjct: 71 LPTLEKLIPHLS-------PTAIVTDVASVKTAIAEPA---------SQLWSGFIGGHPM 114
Query: 120 DAPVSGGVLAAEAG-------TLTFMVGGSEDAYQAAKPLFLSMGKNTIYC 163
+ G+ AE LT + + + +G C
Sbjct: 115 AGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLC 165
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 301 | |||
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.97 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.96 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.93 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.93 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.92 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.91 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.9 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.89 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.83 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.73 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.7 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.61 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.52 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.47 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.4 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.37 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.31 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.28 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.18 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.08 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 99.02 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.95 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 98.83 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 98.73 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 98.71 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.23 | |
| d1txga1 | 155 | Glycerol-3-phosphate dehydrogenase {Archaeoglobus | 98.13 | |
| d1n1ea1 | 160 | Glycerol-3-phosphate dehydrogenase {Trypanosome (L | 98.12 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.01 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.83 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 97.78 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 97.66 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 97.64 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.55 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 97.49 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.4 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 97.37 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 97.33 | |
| d1i36a1 | 112 | Conserved hypothetical protein MTH1747 {Archaeon M | 97.22 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 97.19 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 96.92 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 96.89 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 96.83 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 96.79 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.52 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.52 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.45 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 96.39 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 96.34 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.23 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 96.22 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.15 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.08 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.89 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 95.83 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 95.8 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 95.7 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 95.31 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 94.85 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 94.79 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.78 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 94.56 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.47 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 94.44 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 93.96 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 93.79 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 93.23 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.04 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 92.84 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 92.54 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 92.49 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 92.48 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 92.24 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 92.15 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 91.74 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 91.16 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 91.08 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 91.02 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 90.98 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 90.97 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 90.85 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.72 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 90.68 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 90.55 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 90.53 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 90.52 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 90.46 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.26 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 90.26 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 90.04 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 90.03 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 89.98 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 89.97 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 89.94 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 89.93 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 89.87 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 89.82 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 89.8 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 89.79 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 89.76 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 89.76 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 89.62 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 89.5 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.43 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 89.41 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 89.38 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 89.38 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 89.26 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 89.22 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 89.19 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 89.17 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 89.17 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 89.07 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 89.04 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 88.97 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 88.84 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 88.83 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 88.22 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 88.19 | |
| d1ks9a1 | 124 | Ketopantoate reductase PanE {Escherichia coli [Tax | 88.07 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 87.96 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 87.47 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 87.47 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 87.38 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 87.15 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 87.14 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 87.12 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 87.05 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 87.02 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 87.01 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 86.61 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 86.39 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 85.83 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 85.31 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 84.83 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 84.79 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 84.62 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 84.47 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 84.41 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 84.25 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 83.44 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 83.21 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 82.65 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 82.61 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 82.53 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 82.44 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 82.31 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 81.67 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 81.39 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 81.16 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 80.97 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 80.62 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 80.57 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 80.53 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 80.46 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 80.38 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 80.14 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 80.1 |
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=7.1e-31 Score=209.22 Aligned_cols=151 Identities=42% Similarity=0.592 Sum_probs=140.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||++|+++||+|++|||++++.+.+.+.+...+.++.|+++++|+||+|||++.+ +++++...+++++. ..++
T Consensus 11 MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~-v~~v~~~~~~~~~~--~~~g 87 (161)
T d1vpda2 11 MGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPH-VKEVALGENGIIEG--AKPG 87 (161)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHH-HHHHHHSTTCHHHH--CCTT
T ss_pred HHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHH-HHHHHhCCcchhhc--cCCC
Confidence 89999999999999999999999999999999999999999999999999999999888 99999877777765 3577
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||++|++++++++.+.+. +++|+|+|++|++..+..|++++++||+++.+++++++|+.++.++
T Consensus 88 ~iiid~sT~~p~~~~~~~~~~~~~----------g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il~~~~~~i 157 (161)
T d1vpda2 88 TVLIDMSSIAPLASREISDALKAK----------GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV 157 (161)
T ss_dssp CEEEECSCCCHHHHHHHHHHHHTT----------TCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEE
T ss_pred CEEEECCCCCHHHHHHHHHHHHHc----------CCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCce
Confidence 999999999999999999998752 3899999999999999999999999999999999999999999999
Q ss_pred EeeC
Q 022170 161 IYCG 164 (301)
Q Consensus 161 ~~~g 164 (301)
+|+|
T Consensus 158 ~~~G 161 (161)
T d1vpda2 158 VHTG 161 (161)
T ss_dssp EEEE
T ss_pred EECC
Confidence 9986
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=7.9e-30 Score=203.25 Aligned_cols=151 Identities=43% Similarity=0.676 Sum_probs=140.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||++|.++||+|++|||++++.+.+.+.+.....++.|++..+|+|++|||++.+ .++++....++.+. ..++
T Consensus 12 MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~-~~~v~~~~~~~~~~--l~~g 88 (162)
T d3cuma2 12 MGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQH-VEGLYLDDDGLLAH--IAPG 88 (162)
T ss_dssp THHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHH-HHHHHHSTTCHHHH--SCTT
T ss_pred HHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhh-HHHHHhcccccccc--CCCC
Confidence 89999999999999999999999999999999999999999999999999999999887 89998877666654 3567
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||++|++++++.+.+.+. +++|+|+|++|+|..++.|++++++||+++.+++++++|+.+++++
T Consensus 89 ~iiid~st~~p~~~~~~~~~~~~~----------gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~il~~~~~~v 158 (162)
T d3cuma2 89 TLVLECSTIAPTSARKIHAAARER----------GLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNI 158 (162)
T ss_dssp CEEEECSCCCHHHHHHHHHHHHHT----------TCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEE
T ss_pred CEEEECCCCCHHHHHHHHHHHHHC----------CCcEEecccccCccccccCCeEEEecCCHHHHHHHHHHHHHHcCcc
Confidence 899999999999999999998752 3899999999999999999999999999999999999999999999
Q ss_pred EeeC
Q 022170 161 IYCG 164 (301)
Q Consensus 161 ~~~g 164 (301)
+|+|
T Consensus 159 ~~~G 162 (162)
T d3cuma2 159 FHAG 162 (162)
T ss_dssp EEEE
T ss_pred EECc
Confidence 9986
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=2.4e-25 Score=171.26 Aligned_cols=133 Identities=43% Similarity=0.710 Sum_probs=124.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchh
Q 022170 165 GAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 244 (301)
Q Consensus 165 ~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (301)
|.|+|+.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+++.||.++.+.+........+.+++|+++|++.
T Consensus 1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 80 (134)
T d3cuma1 1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQ 80 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchH
Confidence 56999999999999999999999999999999999999999999999999999887766555555567789999999999
Q ss_pred hHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhCC
Q 022170 245 LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 297 (301)
Q Consensus 245 ~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 297 (301)
.+.||++++.+++++.|+|+|+++.+.++|+.+.++|+|+.|+++|+++|++-
T Consensus 81 l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~s~i~~~~e~~ 133 (134)
T d3cuma1 81 LMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPT 133 (134)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999998753
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.93 E-value=2.5e-26 Score=185.28 Aligned_cols=144 Identities=16% Similarity=0.239 Sum_probs=124.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC--------CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--------TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLL 72 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~--------~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l 72 (301)
||.+||++|+++||+|++|||++++++.+.+.+.. ...++.+++..+|++++|+|++.+ +.++..+ ++
T Consensus 13 MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~-v~~v~~~---l~ 88 (176)
T d2pgda2 13 MGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQA-VDNFIEK---LV 88 (176)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHH-HHHHHHH---HH
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHH-HHHHHHH---HH
Confidence 89999999999999999999999999999887532 334555677889999999998887 8888754 34
Q ss_pred cCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHH
Q 022170 73 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 152 (301)
Q Consensus 73 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 152 (301)
+. ..+++++||+||++|.+++++++.+.+. ++.|+|+|++|++..+..|+ ++|+||+++.+++++++
T Consensus 89 ~~--~~~g~iiid~sT~~~~~~~~~~~~~~~~----------g~~~ldapvsGg~~~A~~G~-~~~~gG~~~~~~~~~~i 155 (176)
T d2pgda2 89 PL--LDIGDIIIDGGNSEYRDTMRRCRDLKDK----------GILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAI 155 (176)
T ss_dssp HH--CCTTCEEEECSCCCHHHHHHHHHHHHHT----------TCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHH
T ss_pred hc--cccCcEEEecCcchhHHHHHHHHHHHhc----------CCceeccccccCcccccCCc-EEEcCCCHHHHHHHHHH
Confidence 33 2467899999999999999999988752 38999999999999999999 89999999999999999
Q ss_pred HHhcCCCeE
Q 022170 153 FLSMGKNTI 161 (301)
Q Consensus 153 l~~~~~~~~ 161 (301)
|+.++.++.
T Consensus 156 l~~~~~kv~ 164 (176)
T d2pgda2 156 FQGIAAKVG 164 (176)
T ss_dssp HHHHSCBCT
T ss_pred HHHHhcccC
Confidence 999998875
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.92 E-value=4.5e-25 Score=169.32 Aligned_cols=125 Identities=29% Similarity=0.441 Sum_probs=117.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchh
Q 022170 165 GAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 244 (301)
Q Consensus 165 ~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (301)
++|+|+.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+++.|+.++.+.| ++++++|+++|+++
T Consensus 1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~~-------~~~~~~~~~~f~~~ 73 (133)
T d1vpda1 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------MVMDRNFKPGFRID 73 (133)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHH-------HHHTTCCCCSSBHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhccc-------hhhhccCCCCchHH
Confidence 46999999999999999999999999999999999999999999999999988776533 35678999999999
Q ss_pred hHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 245 LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 245 ~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
++.||+.++.+++++.|+|+|+++.+.++|+.+.++|+|+.|+++|++++++
T Consensus 74 l~~KDl~l~~~~a~~~~~~~p~~~~~~~~~~~a~~~G~~~~D~s~i~~~~~~ 125 (133)
T d1vpda1 74 LHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEK 125 (133)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999865
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=6.2e-25 Score=173.53 Aligned_cols=146 Identities=28% Similarity=0.423 Sum_probs=124.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||.+||++|.++||.| +|+|++++...+.+.+...... .+.+.++|++++|+|++.+ +..+.. ++++. ..++
T Consensus 11 MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~-v~~~~~---~l~~~--~~~~ 82 (156)
T d2cvza2 11 MGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVP-LERVAEARVIFTCLPTTRE-VYEVAE---ALYPY--LREG 82 (156)
T ss_dssp THHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECC-GGGGGGCSEEEECCSSHHH-HHHHHH---HHTTT--CCTT
T ss_pred HHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccc-cccccceeEEEecccchhh-hhhhhc---ccccc--cccc
Confidence 9999999999999865 7999999888877765554444 4566789999999998776 766654 34443 3578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
.++||+||++|++++++++.+.+. ++.|+|+|++|++..+..|++++|+||+++.+++++++| .+++++
T Consensus 83 ~~iid~sT~~p~~~~~~~~~~~~~----------gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L-~~~~~v 151 (156)
T d2cvza2 83 TYWVDATSGEPEASRRLAERLREK----------GVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKV 151 (156)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHTT----------TEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEE
T ss_pred ccccccccCCHHHHHHHHHHHHHc----------CCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHHH-HhcCcC
Confidence 999999999999999999998752 389999999999999999999999999999999999999 599999
Q ss_pred EeeCC
Q 022170 161 IYCGG 165 (301)
Q Consensus 161 ~~~g~ 165 (301)
+|+||
T Consensus 152 ~~~GP 156 (156)
T d2cvza2 152 VHVGP 156 (156)
T ss_dssp EEEES
T ss_pred EEeCc
Confidence 99986
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=3.9e-24 Score=163.92 Aligned_cols=125 Identities=25% Similarity=0.312 Sum_probs=115.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhh
Q 022170 166 AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKL 245 (301)
Q Consensus 166 ~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (301)
+|+|+.+|+++|++.++++.+++|++.++++.|+|+++++++++.+++.|+.+..+.| . .+.+++|+++|+++.
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~p--~----~~~~~~~~~~f~~~~ 74 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIP--Q----RVLTRAFPKTFALGL 74 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHH--H----HTTTSCCCCSSBHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhhh--H----HHHHHhhhhhhHHHH
Confidence 5899999999999999999999999999999999999999999999988887654322 1 356789999999999
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhC
Q 022170 246 MAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 296 (301)
Q Consensus 246 ~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 296 (301)
+.||++++.+++++.|+|+|+++.+.++|+.+.++|+|+.|+++|++++++
T Consensus 75 ~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~g~~~~D~s~i~~~~e~ 125 (132)
T d2cvza1 75 LVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLER 125 (132)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHH
T ss_pred HhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999976
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.89 E-value=1.5e-23 Score=169.12 Aligned_cols=152 Identities=16% Similarity=0.272 Sum_probs=127.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC--------CCCHHH---HHhcCCEEEEecCCCccchhhhhcCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT--------KETPFE---VAEASDVVITMLPSSSHQVLDVYNGPN 69 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~--------~~s~~e---~~~~adiVi~~vp~~~~~~~~v~~~~~ 69 (301)
||.+||++|+++||+|++|||++++.+.+.+.+... ..+..+ .+..++.++++++.... +..++....
T Consensus 12 MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 90 (178)
T d1pgja2 12 MGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA-TDSTIEQLK 90 (178)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch-hhhhhhhhh
Confidence 899999999999999999999999999998876432 223333 34578999999997776 777765432
Q ss_pred ccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHH
Q 022170 70 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 149 (301)
Q Consensus 70 ~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~ 149 (301)
..+ .++++++|+||+.|++++++++.+... ++.|+++|+++++..+..|+ ++|+||+++.++++
T Consensus 91 ~~~-----~~~~iii~~st~~~~~~~~~~~~l~~~----------~~~~ldapv~g~~~~a~~g~-~~mvgG~~~~~~~v 154 (178)
T d1pgja2 91 KVF-----EKGDILVDTGNAHFKDQGRRAQQLEAA----------GLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEI 154 (178)
T ss_dssp HHC-----CTTCEEEECCCCCHHHHHHHHHHHHTT----------TCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHH
T ss_pred hhc-----cccceecccCccchhHHHHHHHHHhhc----------ceeEecccccCCcchhcCCc-EEEeeCCHHHHHHH
Confidence 222 356899999999999999999988652 38999999999999999998 88999999999999
Q ss_pred HHHHHhcCCCeE----eeCCcchH
Q 022170 150 KPLFLSMGKNTI----YCGGAGNG 169 (301)
Q Consensus 150 ~~ll~~~~~~~~----~~g~~g~a 169 (301)
+++|+.+++++. |+|+.|++
T Consensus 155 ~pil~~~~~~~~~~~~~~g~~G~G 178 (178)
T d1pgja2 155 RPIVEAAAAKADDGRPCVTMNGSG 178 (178)
T ss_dssp HHHHHHHSCBCTTSCBSCCCCCST
T ss_pred HHHHHHHhccccCCCCccCCCCCC
Confidence 999999999888 89988864
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.83 E-value=6.2e-21 Score=149.62 Aligned_cols=140 Identities=19% Similarity=0.183 Sum_probs=113.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||++||++|.++||+|++||+++++...+...++..+.++.|+++++|+||+|||++. ..+++... .. ..+
T Consensus 11 mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~--~~~~~~~~---~~----~~~ 81 (152)
T d1i36a2 11 VAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGV--ALGAARRA---GR----HVR 81 (152)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGG--HHHHHHHH---HT----TCC
T ss_pred HHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCch--HHHHHHhh---cc----cCC
Confidence 8999999999999999999999888877777777778899999999999999999765 45555432 21 134
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+||++|.+++++++.+++ ..|+++|+++++..+..++..++.|++.+.+++ |+.++.++
T Consensus 82 ~~~id~st~~p~~~~~l~~~~~~------------~~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~~----l~~~g~~i 145 (152)
T d1i36a2 82 GIYVDINNISPETVRMASSLIEK------------GGFVDAAIMGSVRRKGADIRIIASGRDAEEFMK----LNRYGLNI 145 (152)
T ss_dssp SEEEECSCCCHHHHHHHHHHCSS------------SEEEEEEECSCHHHHGGGCEEEEESTTHHHHHG----GGGGTCEE
T ss_pred ceeeccCcCCHHHHHHHHHHHhc------------cCCCcccccCCcccccCCcEEEEECCCHHHHHH----HHHcCCee
Confidence 69999999999999999988753 469999999999988888865555556555543 67889999
Q ss_pred EeeCC
Q 022170 161 IYCGG 165 (301)
Q Consensus 161 ~~~g~ 165 (301)
.++|+
T Consensus 146 ~~~G~ 150 (152)
T d1i36a2 146 EVRGR 150 (152)
T ss_dssp EECSS
T ss_pred eEcCC
Confidence 99985
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=1.3e-19 Score=142.13 Aligned_cols=142 Identities=11% Similarity=-0.010 Sum_probs=106.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||++|+.+|.+.++.+.+|+|++++.+++.+.+...+.++.++++.+|+||+|||++. +.+++.+. ..++
T Consensus 10 mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~--i~~v~~~l--------~~~~ 79 (153)
T d2i76a2 10 LTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRY--IKTVANHL--------NLGD 79 (153)
T ss_dssp HHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTT--HHHHHTTT--------CCSS
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccchh--hhHHHhhh--------cccc
Confidence 8999999997755556799999999999999877778899999999999999999654 88888653 1356
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHHHHHHHHHHHhcCCCe
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 160 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~ 160 (301)
+++||+|+..|....+ ... .. +++++.+|..+++..+..++.+++++||+++++.++++++.+|.++
T Consensus 80 ~ivi~~s~~~~~~~l~---~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~ 146 (153)
T d2i76a2 80 AVLVHCSGFLSSEIFK---KSG------RA----SIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKY 146 (153)
T ss_dssp CCEEECCSSSCGGGGC---SSS------EE----EEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCE
T ss_pred eeeeecccchhhhhhh---hhc------cc----cceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCCcE
Confidence 8999999987753221 111 11 2667777777777777777778999999999999999999999999
Q ss_pred EeeCC
Q 022170 161 IYCGG 165 (301)
Q Consensus 161 ~~~g~ 165 (301)
+++++
T Consensus 147 ~~i~~ 151 (153)
T d2i76a2 147 FVIPS 151 (153)
T ss_dssp EECCG
T ss_pred EEeCC
Confidence 99864
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.70 E-value=2.4e-17 Score=130.59 Aligned_cols=147 Identities=10% Similarity=0.139 Sum_probs=111.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-CCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||++||++|.++||+|++|||+++.++++.+.|.. ...+..++++++|+||+|+|.+ . +.+++.+..+.+ .+
T Consensus 11 mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~-~-~~~vl~~l~~~l-----~~ 83 (165)
T d2f1ka2 11 IGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQ-L-ILPTLEKLIPHL-----SP 83 (165)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHH-H-HHHHHHHHGGGS-----CT
T ss_pred HHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHh-h-hhhhhhhhhhhc-----cc
Confidence 89999999999999999999999999998888753 3445567889999999999954 4 788887654433 45
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhh----ccceEEEe---cCCHHHHHHHHHH
Q 022170 80 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE----AGTLTFMV---GGSEDAYQAAKPL 152 (301)
Q Consensus 80 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~----~g~l~~~~---gg~~~~~~~~~~l 152 (301)
+.+++|++++.+...+.+.+...+ . ...+.+.+|...++..+. .+...+++ +++++.++.++++
T Consensus 84 ~~iv~~~~s~~~~~~~~~~~~~~~-----~----~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~~l 154 (165)
T d2f1ka2 84 TAIVTDVASVKTAIAEPASQLWSG-----F----IGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSV 154 (165)
T ss_dssp TCEEEECCSCCHHHHHHHHHHSTT-----C----EEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred ccceeeccccchHHHHHHHHhhcc-----c----ccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 689999999988877776554331 1 124556666666665543 23334444 6789999999999
Q ss_pred HHhcCCCeEee
Q 022170 153 FLSMGKNTIYC 163 (301)
Q Consensus 153 l~~~~~~~~~~ 163 (301)
|+.+|.++++|
T Consensus 155 ~~~lG~~v~~c 165 (165)
T d2f1ka2 155 LEPLGVKIYLC 165 (165)
T ss_dssp HGGGTCEEEEC
T ss_pred HHHhCCEEEeC
Confidence 99999998765
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.61 E-value=1.6e-15 Score=118.23 Aligned_cols=129 Identities=19% Similarity=0.225 Sum_probs=101.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
||++||++|.++||+|++|||++... .++.+..+|++++|+|... +..++......+ .++
T Consensus 21 mG~~la~~L~~~G~~V~~~d~~~~~~-------------~~~~~~~~~~v~~~~~~~~--~~~v~~~~~~~~-----~~~ 80 (152)
T d2pv7a2 21 LGGLFARYLRASGYPISILDREDWAV-------------AESILANADVVIVSVPINL--TLETIERLKPYL-----TEN 80 (152)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTCGGG-------------HHHHHTTCSEEEECSCGGG--HHHHHHHHGGGC-----CTT
T ss_pred HHHHHHHHHHHcCCCcEecccccccc-------------cchhhhhccccccccchhh--heeeeecccccc-----cCC
Confidence 89999999999999999999987643 3456788999999999544 666665433332 467
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-ecccCCCHHHhhccceEEEe-cCCHHHHHHHHHHHHhcCC
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMV-GGSEDAYQAAKPLFLSMGK 158 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~a~~g~l~~~~-gg~~~~~~~~~~ll~~~~~ 158 (301)
.+++|++|+++...+++.+... ..|+ .+|++|++.....+...+++ +++++.++++.++|+.+|.
T Consensus 81 ~iiiD~~Svk~~~~~~~~~~~~-------------~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~~~ll~~~Ga 147 (152)
T d2pv7a2 81 MLLADLTSVKREPLAKMLEVHT-------------GAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGA 147 (152)
T ss_dssp SEEEECCSCCHHHHHHHHHHCS-------------SEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTC
T ss_pred ceEEEecccCHHHHHHHHHHcc-------------CCEEEecccCCCcccccCCcEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 8999999999999888866432 2454 67999988877777666655 6688999999999999999
Q ss_pred CeEe
Q 022170 159 NTIY 162 (301)
Q Consensus 159 ~~~~ 162 (301)
+++.
T Consensus 148 ~v~e 151 (152)
T d2pv7a2 148 KIYQ 151 (152)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8875
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.52 E-value=9.9e-15 Score=120.93 Aligned_cols=139 Identities=12% Similarity=0.056 Sum_probs=108.1
Q ss_pred HHHhCCCeEEEEcCChhhH-HHHHhC------------------------------------CCCCCCCHHHHHhcCCEE
Q 022170 8 NLMKAGYKMAVHDVNCNVM-KMFSDM------------------------------------GVPTKETPFEVAEASDVV 50 (301)
Q Consensus 8 ~L~~~G~~V~~~dr~~~~~-~~l~~~------------------------------------g~~~~~s~~e~~~~adiV 50 (301)
+|++.||.|++.|.+++++ +.+.+. |++.++|+.|+++++|+|
T Consensus 66 ~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiI 145 (242)
T d2b0ja2 66 CFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIV 145 (242)
T ss_dssp GGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGGGTCEEESCHHHHHTTCSEE
T ss_pred hhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhhcCCHHHCCCEEECCHHHHHhcCCeE
Confidence 5788999999999997764 333221 466779999999999999
Q ss_pred EEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHh
Q 022170 51 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAA 130 (301)
Q Consensus 51 i~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a 130 (301)
|+|||++.. +.+++.+ +.+. ..++.+|+|+||++|....++.+.+.+ . +++|++.+..++|. .
T Consensus 146 I~~vP~~~~-v~~Vi~~---I~~~--l~~g~Iiid~STi~~~~~~~l~e~l~~------k----gi~vi~~hp~a~pe-~ 208 (242)
T d2b0ja2 146 ITWLPKGNK-QPDIIKK---FADA--IPEGAIVTHACTIPTTKFAKIFKDLGR------E----DLNITSYHPGCVPE-M 208 (242)
T ss_dssp EECCTTCTT-HHHHHHH---HGGG--SCTTCEEEECSSSCHHHHHHHHHHTTC------T----TSEEEECBCSSCTT-T
T ss_pred EEeeecHHH-HHHHHHH---HHhh--CCCCcEEEecCCCcHHHHHHHHHhccc------C----CCEEECCCccCcCc-c
Confidence 999998876 7888865 4433 346789999999999999999888764 2 37888766555553 3
Q ss_pred hccceEEEecCCHHHHHHHHHHHHhcCCCeEee
Q 022170 131 EAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYC 163 (301)
Q Consensus 131 ~~g~l~~~~gg~~~~~~~~~~ll~~~~~~~~~~ 163 (301)
....+++..+++++.++++.++|+.+|++++.+
T Consensus 209 ~g~~li~~~~aseE~iekv~elles~Gk~~~vv 241 (242)
T d2b0ja2 209 KGQVYIAEGYASEEAVNKLYEIGKIARGKAFKM 241 (242)
T ss_dssp CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred ccceEEecCCCCHHHHHHHHHHHHHHCCCeEeC
Confidence 334556677789999999999999999988764
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.47 E-value=1.5e-13 Score=111.86 Aligned_cols=158 Identities=13% Similarity=0.060 Sum_probs=111.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--------------------CCCCCCHHHHHhcCCEEEEecCCCcc-
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------------VPTKETPFEVAEASDVVITMLPSSSH- 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--------------------~~~~~s~~e~~~~adiVi~~vp~~~~- 59 (301)
+|.++|..|+++||+|++||.|+++++.+++.. ...+++..+++.++|++|+|||+|..
T Consensus 11 vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i~i~VpTP~~~ 90 (202)
T d1mv8a2 11 VGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKK 90 (202)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEEEECCCCCBCT
T ss_pred hHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEEEEecCccccc
Confidence 599999999999999999999999998887532 34567888999999999999998631
Q ss_pred -------chhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhc
Q 022170 60 -------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 132 (301)
Q Consensus 60 -------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~ 132 (301)
.+.++......++.. ..++.++|..||+.|.+++++...+.+..... ....++.+..+|.+-.+..+..
T Consensus 91 ~~~~d~~~~~~~~~~i~~~~~~--~~~~~liii~STv~pGtt~~~~~~~l~~~~~~--~~~~~~~~~~~PE~~~~G~a~~ 166 (202)
T d1mv8a2 91 NGDLDLGYIETVCREIGFAIRE--KSERHTVVVRSTVLPGTVNNVVIPLIEDCSGK--KAGVDFGVGTNPEFLRESTAIK 166 (202)
T ss_dssp TSSBCCHHHHHHHHHHHHHHTT--CCSCCEEEECSCCCTTHHHHTHHHHHHHHHSC--CBTTTBEEEECCCCCCTTSHHH
T ss_pred cccccchhhhhhhhhhhheeec--ccCCcceeeccccCCcchhhhhhhhhhccccc--cccccccchhhhhhhcccchhh
Confidence 122333222222322 23567999999999999999877654321101 1113477889998765544332
Q ss_pred c---ceEEEecC-CHHHHHHHHHHHHhcCCCeEe
Q 022170 133 G---TLTFMVGG-SEDAYQAAKPLFLSMGKNTIY 162 (301)
Q Consensus 133 g---~l~~~~gg-~~~~~~~~~~ll~~~~~~~~~ 162 (301)
. .-.+++|+ +++..+.++.+|+.+..+++.
T Consensus 167 d~~~~~~iViG~~~~~~~~~~~~ly~~i~~~ii~ 200 (202)
T d1mv8a2 167 DYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR 200 (202)
T ss_dssp HHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE
T ss_pred hhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEe
Confidence 1 11356777 788899999999999877664
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.40 E-value=1.1e-12 Score=103.81 Aligned_cols=144 Identities=17% Similarity=0.256 Sum_probs=104.7
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCCCC--CCCCHHHH-HhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP--TKETPFEV-AEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~~--~~~s~~e~-~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
||++||++|.++|+ +|++||++++..+.+.+.+.. ..++..+. ...+|+|++|+|. .. +.+++.+....+
T Consensus 12 mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~-~~-~~~vl~~l~~~~--- 86 (171)
T d2g5ca2 12 MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RT-FREIAKKLSYIL--- 86 (171)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HH-HHHHHHHHHHHS---
T ss_pred HHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCc-hh-hhhhhhhhhccc---
Confidence 79999999999996 688999999999999888753 23444443 3579999999994 44 777776544333
Q ss_pred CCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCC----CHHHhh----ccceEEEe---cCCHH
Q 022170 76 NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG----GVLAAE----AGTLTFMV---GGSED 144 (301)
Q Consensus 76 ~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g----~~~~a~----~g~l~~~~---gg~~~ 144 (301)
.++.+++|++++.....+.+.+.+... .....|+.| |+..+. .|...+++ +.+++
T Consensus 87 --~~~~ii~d~~s~k~~~~~~~~~~~~~~------------~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~ 152 (171)
T d2g5ca2 87 --SEDATVTDQGSVKGKLVYDLENILGKR------------FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKK 152 (171)
T ss_dssp --CTTCEEEECCSCCTHHHHHHHHHHGGG------------EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHH
T ss_pred --cccccccccccccHHHHHHHHHhhccc------------ccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHH
Confidence 356899999999998888877665431 122345554 444443 35545666 34788
Q ss_pred HHHHHHHHHHhcCCCeEee
Q 022170 145 AYQAAKPLFLSMGKNTIYC 163 (301)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~ 163 (301)
.++.++.+++.+|.+++++
T Consensus 153 ~~~~v~~~~~~lG~~v~~M 171 (171)
T d2g5ca2 153 RLKLVKRVWEDVGGVVEYM 171 (171)
T ss_dssp HHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHcCCEEEeC
Confidence 9999999999999888753
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.37 E-value=7.8e-14 Score=112.24 Aligned_cols=148 Identities=11% Similarity=0.145 Sum_probs=109.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--------------CCCCCCHHHHHhcCCEEEEecCCCccchhhhhc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 66 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~ 66 (301)
||+++|..|+++||+|++|+|+++.++.+++.+ +.++.+++++++++|+||++||.. . +++++.
T Consensus 18 wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavPs~-~-~~~~~~ 95 (189)
T d1n1ea2 18 FGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQ-F-LRGFFE 95 (189)
T ss_dssp HHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSCHH-H-HHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCcHH-H-HHHHHH
Confidence 799999999999999999999999999887642 445678899999999999999954 4 788886
Q ss_pred CCCccccCCCCCCCe-EEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHH
Q 022170 67 GPNGLLQGGNSVRPQ-LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 145 (301)
Q Consensus 67 ~~~~~l~~~~~~~~~-ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~ 145 (301)
+...........++. ++.-+.++.+++.+.+.+.+.+.. .. ..+.++.+|.+..+...+..+..++.+.|.+.
T Consensus 96 ~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~-~~-----~~~~vlsGP~~A~Ev~~~~pt~~viAs~~~~~ 169 (189)
T d1n1ea2 96 KSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFL-PS-----PLLSVLAGPSFAIEVATGVFTCVSIASADINV 169 (189)
T ss_dssp HHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTS-CG-----GGEEEEESSCCHHHHHTTCCEEEEEECSSHHH
T ss_pred HHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHh-cc-----cceEEEecCCcHHHHHcCCCcEEEEEeCCHHH
Confidence 644321000001223 444456788888888888776521 11 12678999999988887778877777779999
Q ss_pred HHHHHHHHHhc
Q 022170 146 YQAAKPLFLSM 156 (301)
Q Consensus 146 ~~~~~~ll~~~ 156 (301)
.+.++++|+..
T Consensus 170 a~~i~~lfst~ 180 (189)
T d1n1ea2 170 ARRLQRIMSTG 180 (189)
T ss_dssp HHHHHHHHSCT
T ss_pred HHHHHHHhCCC
Confidence 99999999753
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.31 E-value=1.4e-11 Score=95.38 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=94.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVR 79 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~ 79 (301)
||++|+.+|.++||+|++|+|++++.+.+.+. |+..+.+..++++.+|+||+||+ |+. +++++... .+
T Consensus 11 mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk-p~~-~~~vl~~l---------~~ 79 (152)
T d2ahra2 11 MASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQL-FETVLKPL---------HF 79 (152)
T ss_dssp HHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGG-HHHHHTTS---------CC
T ss_pred HHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc-hHh-HHHHhhhc---------cc
Confidence 89999999999999999999999999988654 88999999999999999999998 555 88887542 12
Q ss_pred CeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-cccCCCHHHhhccceEEEecC---CHHHHHHHHHHHH
Q 022170 80 PQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFL 154 (301)
Q Consensus 80 ~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~ 154 (301)
++++|+. ++++.++ +.+.+.. +..++. .|..+ .....+. +.+.++ +++.++.++++|+
T Consensus 80 ~~~iis~~agi~~~~---l~~~l~~-----------~~~ivr~mPN~~--~~v~~g~-~~~~~~~~~~~~~~~~v~~l~~ 142 (152)
T d2ahra2 80 KQPIISMAAGISLQR---LATFVGQ-----------DLPLLRIMPNMN--AQILQSS-TALTGNALVSQELQARVRDLTD 142 (152)
T ss_dssp CSCEEECCTTCCHHH---HHHHHCT-----------TSCEEEEECCGG--GGGTCEE-EEEEECTTCCHHHHHHHHHHHH
T ss_pred ceeEecccccccHHH---HHhhhcc-----------cccchhhccchh--hhcCccc-eEEEeCCCCCHHHHHHHHHHHH
Confidence 3456644 5666654 4444432 122332 24221 2222343 334433 5889999999999
Q ss_pred hcCCCeEee
Q 022170 155 SMGKNTIYC 163 (301)
Q Consensus 155 ~~~~~~~~~ 163 (301)
.+|. ++.+
T Consensus 143 ~~G~-~~~v 150 (152)
T d2ahra2 143 SFGS-TFDI 150 (152)
T ss_dssp TTEE-EEEC
T ss_pred hCCC-EEEe
Confidence 9996 4444
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.28 E-value=1.2e-12 Score=104.40 Aligned_cols=146 Identities=19% Similarity=0.190 Sum_probs=101.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcC--ChhhHHHHHhCC-------------CCCCCCHHHHHhcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDV--NCNVMKMFSDMG-------------VPTKETPFEVAEASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr--~~~~~~~l~~~g-------------~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~ 65 (301)
||+++|..|+++||+|++|.| +++.++.+++.+ +..++++.++++++|+|+++||. .. +++++
T Consensus 11 ~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avps-~~-~~~~~ 88 (180)
T d1txga2 11 MGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVST-DG-VLPVM 88 (180)
T ss_dssp HHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSCG-GG-HHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccch-hh-hHHHH
Confidence 799999999999999999988 455577776542 23457888999999999999995 44 89999
Q ss_pred cCCCccccCCCCCCCeEEEEeCCCCHHHH--HHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCH
Q 022170 66 NGPNGLLQGGNSVRPQLLIDSSTIDPQTS--RNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSE 143 (301)
Q Consensus 66 ~~~~~~l~~~~~~~~~ivid~st~~p~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~ 143 (301)
.+..+++. +..+++.+++..+... ..+.+.+.+. .......+.++.+|.+..+......+..++.+.|.
T Consensus 89 ~~l~~~l~-----~~~ii~~tkg~~~~~~~~~~~~~~~~~~----~~~~~~~~~vlsGP~~A~Ei~~~~pt~~vias~~~ 159 (180)
T d1txga2 89 SRILPYLK-----DQYIVLISKGLIDFDNSVLTVPEAVWRL----KHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSE 159 (180)
T ss_dssp HHHTTTCC-----SCEEEECCCSEEEETTEEEEHHHHHHTT----STTCGGGEEEEESSCCHHHHHTTCCEEEEEECSCH
T ss_pred Hhhccccc-----cceecccccCccccccccccchHHHHhh----hcccccceeEEcCCccHHHHHcCCCcEEEEEcCCH
Confidence 87655552 3456665555532211 1122333221 00101125788999999888877778777777788
Q ss_pred HHHHHHHHHHHhcC
Q 022170 144 DAYQAAKPLFLSMG 157 (301)
Q Consensus 144 ~~~~~~~~ll~~~~ 157 (301)
+..+.++++|+.-.
T Consensus 160 ~~a~~i~~~f~~~~ 173 (180)
T d1txga2 160 SSANKMKEIFETEY 173 (180)
T ss_dssp HHHHHHHHHHCBTT
T ss_pred HHHHHHHHHHCCCC
Confidence 88899999986533
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.18 E-value=1.3e-11 Score=95.62 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=88.7
Q ss_pred CcHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||++|+.+|.++| |+|++|||++++.+.+.+. |+...++.++ +.++|+||+||+ |++ +.+++.+. . .
T Consensus 11 MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk-P~~-~~~v~~~l---~-----~ 79 (152)
T d1yqga2 11 MAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK-PQD-MEAACKNI---R-----T 79 (152)
T ss_dssp HHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC-HHH-HHHHHTTC---C-----C
T ss_pred HHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC-HHH-HHHhHHHH---h-----h
Confidence 8999999999888 9999999999999998775 7776666655 577999999998 666 88888653 2 1
Q ss_pred CCeEEEEe-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecC--CHHHHHHHHHHHHh
Q 022170 79 RPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLS 155 (301)
Q Consensus 79 ~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~ 155 (301)
.++++|.. ++++.+ .+.+.+... ...+- .+-..|.....|...+..+. +++..+.++++|+.
T Consensus 80 ~~~~viS~~ag~~~~---~l~~~l~~~-----------~~iir-~mpn~p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~ 144 (152)
T d1yqga2 80 NGALVLSVAAGLSVG---TLSRYLGGT-----------RRIVR-VMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKS 144 (152)
T ss_dssp TTCEEEECCTTCCHH---HHHHHTTSC-----------CCEEE-EECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cccEEeecccCCCHH---HHHHHhCcC-----------cceEe-ecccchhHhcCCcEEEEeCCCCCHHHHHHHHHHHHh
Confidence 24566654 555544 454544320 11221 11122333344542333333 47788999999999
Q ss_pred cCCC
Q 022170 156 MGKN 159 (301)
Q Consensus 156 ~~~~ 159 (301)
+|..
T Consensus 145 ~G~~ 148 (152)
T d1yqga2 145 VGLT 148 (152)
T ss_dssp TEEE
T ss_pred CCCE
Confidence 9963
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=7.3e-11 Score=94.75 Aligned_cols=142 Identities=13% Similarity=0.261 Sum_probs=93.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC------------------CCCCCCHHHHHhcCCEEE
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG------------------VPTKETPFEVAEASDVVI 51 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~g------------------~~~~~s~~e~~~~adiVi 51 (301)
||+++|..++++||+|++||++++..+...+ .+ +..+.++.+++.+||+|+
T Consensus 15 mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~~a~~~ad~Vi 94 (192)
T d1f0ya2 15 MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVV 94 (192)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHHHHTTSCSEEE
T ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhHhhhcccceeh
Confidence 8999999999999999999999986553322 12 335668888999999999
Q ss_pred EecCCCccchh-hhhcCCCccccCCCCCCCeEEE-EeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHH
Q 022170 52 TMLPSSSHQVL-DVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLA 129 (301)
Q Consensus 52 ~~vp~~~~~~~-~v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~ 129 (301)
-|+|.+.. ++ +++...+.+.+ ++.++. ++|+.++. ++++.+.. +.+..+.||..+|-.-.
T Consensus 95 Eav~E~l~-~K~~v~~~l~~~~~-----~~~ilasnTS~l~i~---~la~~~~~------p~r~ig~HffnP~~~~~--- 156 (192)
T d1f0ya2 95 EAIVENLK-VKNELFKRLDKFAA-----EHTIFASNTSSLQIT---SIANATTR------QDRFAGLHFFNPVPVMK--- 156 (192)
T ss_dssp ECCCSCHH-HHHHHHHHHTTTSC-----TTCEEEECCSSSCHH---HHHTTSSC------GGGEEEEEECSSTTTCC---
T ss_pred hhcccchh-HHHHHHHHHhhhcc-----cCceeeccCcccccc---hhhhhccC------HhHEEeeccccccCccc---
Confidence 99998866 44 44444444442 333333 44444444 45544432 22222366665553222
Q ss_pred hhccceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCC
Q 022170 130 AEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG 165 (301)
Q Consensus 130 a~~g~l~~~~gg---~~~~~~~~~~ll~~~~~~~~~~g~ 165 (301)
++=++.| +++.++.+..+++.+|+.++.+.+
T Consensus 157 -----lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~D 190 (192)
T d1f0ya2 157 -----LVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKD 190 (192)
T ss_dssp -----EEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred -----EEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Confidence 1222332 788999999999999999988754
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.02 E-value=2e-09 Score=76.12 Aligned_cols=95 Identities=15% Similarity=0.178 Sum_probs=76.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 022170 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 246 (301)
Q Consensus 167 g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (301)
..|+.+|++.|.+.+..+++++|+..+|++.|+|..++.++++...-.........| ..||...++
T Consensus 2 e~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~ri~~~~~~~~p--------------G~G~GG~Cl 67 (98)
T d1mv8a1 2 EVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRP--------------GFAFGGSCL 67 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTTTTSSTTCSC--------------CSCCCSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCccccccccccCC--------------cccCCcccc
Confidence 468999999999999999999999999999999999999999765310000000111 136778999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 022170 247 AKDLNLALASAKEVGVDCPLTSQAQDIYA 275 (301)
Q Consensus 247 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 275 (301)
.||+..+..++++.+++.++++++.++-+
T Consensus 68 pKD~~al~~~a~~~~~~~~ll~~~~~~N~ 96 (98)
T d1mv8a1 68 PKDVRALTYRASQLDVEHPMLGSLMRSNS 96 (98)
T ss_dssp HHHHHHHHHHHHHTTCCCTTGGGHHHHHH
T ss_pred chhHHHHHHHHHHcCCChHHHHHHHHHHh
Confidence 99999999999999999999999887644
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.95 E-value=6.2e-10 Score=88.28 Aligned_cols=94 Identities=15% Similarity=0.170 Sum_probs=72.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC---------------CCCCCCHHHHHhcCCEEEEecCCCccchhhhh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---------------VPTKETPFEVAEASDVVITMLPSSSHQVLDVY 65 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g---------------~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~ 65 (301)
||+++|..|+++||+|++|+|++++.+.+.+.+ ....+++.|+++++|+||+|+|... .++++
T Consensus 12 ~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v~~~~--~~~~~ 89 (184)
T d1bg6a2 12 GGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVPAIH--HASIA 89 (184)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSCGGG--HHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEEchhH--HHHHH
Confidence 799999999999999999999999999887653 2235688999999999999999654 78888
Q ss_pred cCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHh
Q 022170 66 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 66 ~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~ 102 (301)
.+..+.+ .++++++.+++....+ ..+.+.+.
T Consensus 90 ~~i~~~l-----~~~~~iv~~~g~~~~~-~~~~~~~~ 120 (184)
T d1bg6a2 90 ANIASYI-----SEGQLIILNPGATGGA-LEFRKILR 120 (184)
T ss_dssp HHHGGGC-----CTTCEEEESSCCSSHH-HHHHHHHH
T ss_pred HHhhhcc-----CCCCEEEEeCCCCccH-HHHHHHHH
Confidence 7665554 2456788777665543 33444443
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.83 E-value=6.1e-10 Score=88.82 Aligned_cols=141 Identities=18% Similarity=0.178 Sum_probs=86.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC-------------CCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
||+++|..++.+||+|++||++++..++..+ .+ +..+.+. +.+.++|+|+.|+|.
T Consensus 15 mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~adlViEav~E 93 (186)
T d1wdka3 15 MGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGNVDLVVEAVVE 93 (186)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGGCSEEEECCCS
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-ccccccceeeeeecc
Confidence 8999999999999999999999987654322 11 2223333 346799999999998
Q ss_pred Cccchhh-hhcCCCccccCCCCCCCeEEE-EeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccc
Q 022170 57 SSHQVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 134 (301)
Q Consensus 57 ~~~~~~~-v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~ 134 (301)
+.. ++. ++.+++.+. +++.++. ++|+..+. ++++.+.. +.+..+.||..+|-.. .
T Consensus 94 ~l~-~K~~lf~~l~~~~-----~~~~IiaSnTS~l~i~---~la~~~~~------p~r~~g~Hf~nP~~~~--------~ 150 (186)
T d1wdka3 94 NPK-VKQAVLAEVENHV-----REDAILASNTSTISIS---LLAKALKR------PENFVGMHFFNPVHMM--------P 150 (186)
T ss_dssp CHH-HHHHHHHHHHTTS-----CTTCEEEECCSSSCHH---HHGGGCSC------GGGEEEEECCSSTTTC--------C
T ss_pred hHH-HHHHHHHHHHhhc-----CCCeeEEeccccccHH---HHHHhccC------chheEeeccccCcccC--------C
Confidence 876 544 444444443 2343433 33444443 45554432 1111124444333211 1
Q ss_pred eE-EEecC--CHHHHHHHHHHHHhcCCCeEeeCC
Q 022170 135 LT-FMVGG--SEDAYQAAKPLFLSMGKNTIYCGG 165 (301)
Q Consensus 135 l~-~~~gg--~~~~~~~~~~ll~~~~~~~~~~g~ 165 (301)
++ ++-|. +++.++.+..+++.+++.++.+.+
T Consensus 151 lVEiv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d 184 (186)
T d1wdka3 151 LVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVND 184 (186)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred eEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 12 22232 788999999999999999988754
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.73 E-value=5.1e-09 Score=84.03 Aligned_cols=129 Identities=13% Similarity=0.076 Sum_probs=84.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC------------------CCCCCCHHHHHhcCCEEEEecCCCcc---
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG------------------VPTKETPFEVAEASDVVITMLPSSSH--- 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g------------------~~~~~s~~e~~~~adiVi~~vp~~~~--- 59 (301)
+|.++|..|+ .||+|++||.|+++++.++..- .....+......++|+|++|+|++..
T Consensus 11 vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~vpt~~~~~~ 89 (196)
T d1dlja2 11 VGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVIIATPTNYNSRI 89 (196)
T ss_dssp HHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEECCCCCEETTT
T ss_pred hHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccccCCccccccC
Confidence 4899998775 6999999999999998887531 22334566677899999999998753
Q ss_pred ---chhhhhcCCCccccCCCCCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhcc---
Q 022170 60 ---QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG--- 133 (301)
Q Consensus 60 ---~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g--- 133 (301)
.+..+....+.+.. ..++.+++-.||+.|.+++++.+.+.. .++...|.+-.+..+...
T Consensus 90 ~~~~~~~v~~~~~~~~~---~~~~~~iii~Stv~pgt~~~~~~~~~~------------~~~~~~PE~i~~G~ai~d~~~ 154 (196)
T d1dlja2 90 NYFDTQHVETVIKEVLS---VNSHATLIIKSTIPIGFITEMRQKFQT------------DRIIFSPEFLRESKALYDNLY 154 (196)
T ss_dssp TEECCHHHHHHHHHHHH---HCSSCEEEECSCCCTTHHHHHHHHTTC------------SCEEECCCCCCTTSTTHHHHS
T ss_pred CCcceeEEeehhhhhhh---cccceeEEeeeecCceeeeeeeeccch------------hhhccchhhcchhhhHhhccC
Confidence 01111000011111 134568888999999999998777643 456778877555443321
Q ss_pred ceEEEecCCHHH
Q 022170 134 TLTFMVGGSEDA 145 (301)
Q Consensus 134 ~l~~~~gg~~~~ 145 (301)
.-.+++|++++.
T Consensus 155 p~riv~G~~~~~ 166 (196)
T d1dlja2 155 PSRIIVSCEEND 166 (196)
T ss_dssp CSCEEEECCTTS
T ss_pred CCEEEEeCCHhh
Confidence 114677776543
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.71 E-value=1.9e-07 Score=65.71 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHH
Q 022170 168 NGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA 247 (301)
Q Consensus 168 ~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (301)
.|+.+|++.|++.++.+++++|+..+|++.|+|...+.+.+....-... + .. +...+|...++.
T Consensus 3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~~~~~------~---~~-------~pg~g~GG~Clp 66 (98)
T d1dlja1 3 EAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGM------H---YN-------NPSFGYGGYSLP 66 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTTCS------S---SC-------CCCSSCCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccccCC------c---cc-------cCCCCcccccCc
Confidence 5899999999999999999999999999999999999988876531110 0 00 112367788999
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022170 248 KDLNLALASAKEVGVDCPLTSQAQDIYAK 276 (301)
Q Consensus 248 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 276 (301)
||...++ +...+++.++++++.+.-+.
T Consensus 67 KD~~al~--~~~~~~~~~ll~~~~~~N~~ 93 (98)
T d1dlja1 67 KDTKQLL--ANYNNIPQTLIEAIVSSNNV 93 (98)
T ss_dssp HHHHHHH--HHHTTSSCSHHHHHHHHHHH
T ss_pred ccHHHHH--HHhcCCCcHHHHHHHHHHHh
Confidence 9999884 56778999999999887654
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.23 E-value=6.1e-07 Score=70.78 Aligned_cols=167 Identities=13% Similarity=0.044 Sum_probs=84.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC-------CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCC-----
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-------VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP----- 68 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~----- 68 (301)
||++||+.|+++||+|.+|+|++++++.+.+.. .....+........+....+.+.... .+.....
T Consensus 12 iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 89 (212)
T d1jaya_ 12 LGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHA--IDTARDLKNILR 89 (212)
T ss_dssp HHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHHH--HHHHHHTHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhheeeecc--chHHHHhhhhhc
Confidence 799999999999999999999999988876641 11223444455566677766664322 1111100
Q ss_pred -CccccCCC--CCCCeEEEEeCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEecccCCCHHHhhccceEEEecCCHHH
Q 022170 69 -NGLLQGGN--SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 145 (301)
Q Consensus 69 -~~~l~~~~--~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~ 145 (301)
........ ..........+ ...........+... ... ..+..+.+|.+..+... .......++.+.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~a 160 (212)
T d1jaya_ 90 EKIVVSPLVPVSRGAKGFTYSS--ERSAAEIVAEVLESE----KVV--SALHTIPAARFANLDEK-FDWDVPVCGDDDES 160 (212)
T ss_dssp TSEEEECCCCEECCTTCCEECC--SSCHHHHHHHHHTCS----CEE--ECCTTCCHHHHHCTTCC-CCEEEEEEESCHHH
T ss_pred cccccccccccccccccccccc--cchhhhhhhhhhhhh----ccc--ccceeecHHHhcCcccc-cCccceEEeCCHHH
Confidence 00000000 00000011111 112223333333221 000 00112233333222221 22334556667666
Q ss_pred HHHHH-HHHHhcCCCeEeeCCcchHHHHHHHHHH
Q 022170 146 YQAAK-PLFLSMGKNTIYCGGAGNGAAAKICNNL 178 (301)
Q Consensus 146 ~~~~~-~ll~~~~~~~~~~g~~g~a~~~k~~~N~ 178 (301)
...+. .+.+..+.+.++.|.+..+..+|.+..+
T Consensus 161 ~~~~~~~~~~~~g~~~~~~G~l~~a~~~e~~~~l 194 (212)
T d1jaya_ 161 KKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPL 194 (212)
T ss_dssp HHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHH
T ss_pred HHHHHHHHhhCCCeEEEEeChHHHHHHHHhHHHH
Confidence 55554 4556678888999998888888865443
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.13 E-value=2.1e-07 Score=71.27 Aligned_cols=124 Identities=11% Similarity=-0.026 Sum_probs=86.7
Q ss_pred chHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC--CCccccccCCCCCCcccCCCCCCCCC-
Q 022170 167 GNGAAAKIC-----NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS--ARCWSSDSYNPVPGVMEGVPASRNYG- 238 (301)
Q Consensus 167 g~a~~~k~~-----~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~- 238 (301)
|....+++. .|+..+.++.++.|+..+++++|.+++++++..+.|+ .++..++++..+..+..+...+..-+
T Consensus 20 Gi~~gl~~g~~~~~~N~~aali~~g~~Em~~~~~~~g~~~~t~~~~aGiGDLi~Tc~~sRN~~~G~~l~~G~~~~e~~~~ 99 (155)
T d1txga1 20 AWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRGGRNGMLGELLGKGLSIDEAMEE 99 (155)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTCHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHhhcccccchHHHHHHHHHHHHhhHhhHHHhhcccchhhcccchhhhHHhhcCCCCccHHHHHHhhhhhHHHHHHH
Confidence 555566666 5999999999999999999999999999988777663 22333566544333322211100000
Q ss_pred ---CCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHhCC
Q 022170 239 ---GGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 297 (301)
Q Consensus 239 ---~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 297 (301)
....+.++...++.+.+++++.++++|+++.+++++. ++.|...+++.+..+
T Consensus 100 ~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~-------~~~~~~~~i~~L~~R 154 (155)
T d1txga1 100 LERRGVGVVEGYKTAEKAYRLSSKINADTKLLDSIYRVLY-------EGLKVEEVLFELATF 154 (155)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------SCCCHHHHHHHHHTT
T ss_pred hccccccchHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHh-------CcCCHHHHHHHHHcC
Confidence 0122556888899999999999999999999999886 356666666666544
|
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.12 E-value=1.1e-07 Score=73.32 Aligned_cols=122 Identities=18% Similarity=0.129 Sum_probs=88.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC----CCccccccCCCCCCcccCCCCCCCCCCCcc
Q 022170 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS----ARCWSSDSYNPVPGVMEGVPASRNYGGGFA 242 (301)
Q Consensus 167 g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (301)
|....+++..|+..+.+..++.|+..+++++|.+++++++..+.|+ +.+..++++..+..+..+...+........
T Consensus 21 Gi~~gl~~g~N~~aali~~g~~Em~~~~~~~g~~~~t~~~laGlGDli~Tc~s~~sRN~~~G~~l~~g~~~~e~~~~~~~ 100 (160)
T d1n1ea1 21 GVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKA 100 (160)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTSTTTHHHHHHHTTCTTSHHHHHHHHHHHTCCHHHHHHSCCS
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHhCCCccceeccccchhheeeeecchhHHHHHHHHHhccccHHHHHHhccc
Confidence 5556667778999999999999999999999999999988766663 555556655433333332211111111233
Q ss_pred hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCCCCchHHHHHHHh
Q 022170 243 SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 295 (301)
Q Consensus 243 ~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 295 (301)
..++.+.++.+.++++++++++|+++++++++. ++.|...+++.+.
T Consensus 101 ~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~-------~~~~p~~~i~~Lm 146 (160)
T d1n1ea1 101 VAEGVATADPLMRLAKQLKVKMPLCHQIYEIVY-------KKKNPRDALADLL 146 (160)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH-------SCCCHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHh-------CcCCHHHHHHHHH
Confidence 567888999999999999999999999999884 5666666666553
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.01 E-value=4.9e-07 Score=69.78 Aligned_cols=81 Identities=12% Similarity=0.031 Sum_probs=57.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC-------CCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcccc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV-------PTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQ 73 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~-------~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~ 73 (301)
||+.+|..|+++||+|++|+|++++.+.+...+. ....+..+....+|+||+|++.. + +++++....+.+
T Consensus 11 iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~-~-~~~~~~~l~~~~- 87 (167)
T d1ks9a2 11 LGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-Q-VSDAVKSLASTL- 87 (167)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-G-HHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeeccc-c-hHHHHHhhcccc-
Confidence 7999999999999999999999987765543321 12334556778999999999954 4 788776544443
Q ss_pred CCCCCCCeEEEEeCC
Q 022170 74 GGNSVRPQLLIDSST 88 (301)
Q Consensus 74 ~~~~~~~~ivid~st 88 (301)
.++++|+.+.+
T Consensus 88 ----~~~~~Iv~~qN 98 (167)
T d1ks9a2 88 ----PVTTPILLIHN 98 (167)
T ss_dssp ----CTTSCEEEECS
T ss_pred ----CcccEEeeccC
Confidence 23456666644
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.83 E-value=1.1e-05 Score=62.50 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=62.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC---------CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---------VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGL 71 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g---------~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~ 71 (301)
||..+|.+|.++||+|++||||.++++.+.+.. ........+.+...|+++.++|.... ..+.. ..
T Consensus 13 ~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~--~~~~~---~~ 87 (182)
T d1e5qa1 13 VTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH--ATVIK---SA 87 (182)
T ss_dssp THHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH--HHHHH---HH
T ss_pred HHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh--hHHHH---HH
Confidence 799999999999999999999999999988752 11222344567789999999986542 22221 11
Q ss_pred ccCCCCCCCeEEEEeCCCCHHHHHHHHHHHh
Q 022170 72 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 102 (301)
Q Consensus 72 l~~~~~~~~~ivid~st~~p~~~~~~~~~~~ 102 (301)
. ..+..++|.+...+. .+.+.+...
T Consensus 88 ~-----~~~~~~~~~~~~~~~-~~~l~~~~~ 112 (182)
T d1e5qa1 88 I-----RQKKHVVTTSYVSPA-MMELDQAAK 112 (182)
T ss_dssp H-----HHTCEEECSSCCCHH-HHHTHHHHH
T ss_pred H-----hhccceeecccCcHH-HHHHHHHhc
Confidence 2 134577887766554 455555444
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.78 E-value=1.6e-05 Score=62.10 Aligned_cols=92 Identities=10% Similarity=0.068 Sum_probs=67.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|..+|+.+..-|.+|++|||++.. .......+++|+++.||+|++++|-... .+.++.. ..+.. .+++
T Consensus 53 IG~~va~~l~~~g~~v~~~d~~~~~------~~~~~~~~l~ell~~sDiv~~~~pl~~~-t~~li~~--~~l~~--mk~~ 121 (181)
T d1qp8a1 53 IGTRVGKILAALGAQVRGFSRTPKE------GPWRFTNSLEEALREARAAVCALPLNKH-TRGLVKY--QHLAL--MAED 121 (181)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCC------SSSCCBSCSHHHHTTCSEEEECCCCSTT-TTTCBCH--HHHTT--SCTT
T ss_pred ccccceeeeeccccccccccccccc------cceeeeechhhhhhccchhhcccccccc-ccccccc--ceeee--cccc
Confidence 4788999999999999999998653 2234567899999999999999997766 6766643 34543 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|++|-...-.-..+.+.+.+
T Consensus 122 ailIN~~RG~ivd~~aL~~aL~~ 144 (181)
T d1qp8a1 122 AVFVNVGRAEVLDRDGVLRILKE 144 (181)
T ss_dssp CEEEECSCGGGBCHHHHHHHHHH
T ss_pred ceEEeccccccccchhhhhhccc
Confidence 99999985433333455555554
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=97.66 E-value=2.5e-05 Score=61.41 Aligned_cols=98 Identities=12% Similarity=0.106 Sum_probs=72.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|..+|+.|..-|.+|.+||+.+.........+.....++.+.++.||+|++++|-... .+.++.. ..++. .+++
T Consensus 55 IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~-T~~li~~--~~l~~--mk~g 129 (188)
T d2naca1 55 IGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPE-TEHMIND--ETLKL--FKRG 129 (188)
T ss_dssp HHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTT-TTTCBSH--HHHTT--SCTT
T ss_pred cchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhccccccc-chhhhHH--HHHHh--CCCC
Confidence 37889999988899999999876655555555677788999999999999999997766 6666643 24443 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|++|-...-.-..+.+.+.+
T Consensus 130 a~lIN~aRG~ivd~~aL~~aL~~ 152 (188)
T d2naca1 130 AYIVNTARGKLCDRDAVARALES 152 (188)
T ss_dssp EEEEECSCGGGBCHHHHHHHHHT
T ss_pred CEEEecCchhhhhHHHHHHHHhC
Confidence 99999985544334455566554
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=97.64 E-value=3e-05 Score=61.06 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=72.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|+.+|+.+..-|.+|.+||+...........+.....+++++++.||+|++++|-... .+.++.. ..++. .+++
T Consensus 58 IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~-T~~li~~--~~l~~--mk~~ 132 (191)
T d1gdha1 58 IGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPE-TRYFFNK--ATIKS--LPQG 132 (191)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTT-TTTCBSH--HHHTT--SCTT
T ss_pred chHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCch-HhheecH--HHhhC--cCCc
Confidence 47889999999999999999876655444444556668999999999999999997766 6666643 34443 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|++|-...-.-..+.+.+.+
T Consensus 133 a~lIN~sRG~ivde~aL~~aL~~ 155 (191)
T d1gdha1 133 AIVVNTARGDLVDNELVVAALEA 155 (191)
T ss_dssp EEEEECSCGGGBCHHHHHHHHHH
T ss_pred cEEEecCCccchhhHHHHHHHHc
Confidence 99999986544444456666654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.55 E-value=4.7e-05 Score=56.13 Aligned_cols=59 Identities=12% Similarity=0.237 Sum_probs=47.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------CCCCHHHH-HhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEV-AEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-------~~~s~~e~-~~~adiVi~~vp~~~~ 59 (301)
+|..+|+.|.+.||+|+++|.|+++++.+...+.. -...+.++ +.++|.||++++++..
T Consensus 11 ~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~ 77 (134)
T d2hmva1 11 FGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ 77 (134)
T ss_dssp HHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHH
T ss_pred HHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHH
Confidence 48999999999999999999999999999877522 22344555 6789999999997654
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=97.49 E-value=6.7e-05 Score=59.05 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=69.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|+.+|+.|..-|.+|.+||+....- .....+.....+++++++.||+|++++|-... .+.++.. ..++. ++++
T Consensus 60 IG~~va~~l~~fg~~v~~~d~~~~~~-~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~-T~~li~~--~~l~~--mk~~ 133 (193)
T d1mx3a1 60 VGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEH-NHHLIND--FTVKQ--MRQG 133 (193)
T ss_dssp HHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTT-CTTSBSH--HHHTT--SCTT
T ss_pred ccccceeeeeccccceeeccCccccc-chhhhccccccchhhccccCCEEEEeeccccc-chhhhhH--HHHhc--cCCC
Confidence 47899999999999999999875532 23333666778999999999999999997665 5555432 23443 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|++|-...-.-..+.+.+.+
T Consensus 134 a~lIN~sRG~ivde~aL~~aL~~ 156 (193)
T d1mx3a1 134 AFLVNTARGGLVDEKALAQALKE 156 (193)
T ss_dssp EEEEECSCTTSBCHHHHHHHHHH
T ss_pred CeEEecCCceEEcHHHHHHHHHc
Confidence 99999986544334455565554
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.40 E-value=6.2e-05 Score=57.37 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=48.2
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CC--CCCCCHHHHHhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GV--PTKETPFEVAEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~--~~~~s~~e~~~~adiVi~~vp~~~ 58 (301)
||..++.+|...|. +|++|+|+.++++.+.+. |. ...+++.+.+.++|+||.|++.+.
T Consensus 35 ~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~~ 96 (159)
T d1gpja2 35 MGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPH 96 (159)
T ss_dssp HHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred HHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCCC
Confidence 68899999999997 699999999999887764 43 334577888899999999998664
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.37 E-value=0.00017 Score=56.23 Aligned_cols=96 Identities=10% Similarity=0.167 Sum_probs=68.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|..+|+.+..-|.+|.+||+...+.... ..+.. ..+++|+++.||+|++++|-... .+.++.. ..+.. ++++
T Consensus 55 IG~~va~~~~~fg~~v~~~d~~~~~~~~~-~~~~~-~~~l~ell~~sDiv~~~~Plt~~-T~~lin~--~~l~~--mk~~ 127 (184)
T d1ygya1 55 IGQLVAQRIAAFGAYVVAYDPYVSPARAA-QLGIE-LLSLDDLLARADFISVHLPKTPE-TAGLIDK--EALAK--TKPG 127 (184)
T ss_dssp HHHHHHHHHHTTTCEEEEECTTSCHHHHH-HHTCE-ECCHHHHHHHCSEEEECCCCSTT-TTTCBCH--HHHTT--SCTT
T ss_pred hhHHHHHHhhhccceEEeecCCCChhHHh-hcCce-eccHHHHHhhCCEEEEcCCCCch-hhhhhhH--HHHhh--hCCC
Confidence 37889999988899999999876654333 23444 45899999999999999997776 6666643 34443 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|++|-...-.-..+.+.+.+
T Consensus 128 a~lIN~sRG~iVde~aL~~aL~~ 150 (184)
T d1ygya1 128 VIIVNAARGGLVDEAALADAITG 150 (184)
T ss_dssp EEEEECSCTTSBCHHHHHHHHHT
T ss_pred ceEEEecchhhhhhHHHHHHHhc
Confidence 99999985444333456666654
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=97.33 E-value=0.00019 Score=56.55 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=66.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|+.+|+.|..-|.+|.+||+....... ..+. ...++.++++.||+|++++|-... .+.++.. ..++. .+++
T Consensus 54 IG~~va~~l~~fg~~V~~~d~~~~~~~~--~~~~-~~~~l~~~l~~sDii~~~~plt~~-T~~li~~--~~l~~--mk~~ 125 (197)
T d1j4aa1 54 IGQVFMQIMEGFGAKVITYDIFRNPELE--KKGY-YVDSLDDLYKQADVISLHVPDVPA-NVHMIND--ESIAK--MKQD 125 (197)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCHHHH--HTTC-BCSCHHHHHHHCSEEEECSCCCGG-GTTCBSH--HHHHH--SCTT
T ss_pred cchhHHHhHhhhcccccccCcccccccc--ccee-eeccccccccccccccccCCcccc-ccccccH--HHHhh--hCCc
Confidence 4889999999999999999987654332 2333 457899999999999999997665 5655532 23333 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|++|-...-.-..+.+.+.+
T Consensus 126 a~lIN~sRG~ivde~aL~~aL~~ 148 (197)
T d1j4aa1 126 VVIVNVSRGPLVDTDAVIRGLDS 148 (197)
T ss_dssp EEEEECSCGGGBCHHHHHHHHHH
T ss_pred cEEEecCchhhhhhHHHHHHHhc
Confidence 99999975443333455555543
|
| >d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Conserved hypothetical protein MTH1747 domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.22 E-value=0.00034 Score=49.45 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=70.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 022170 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 246 (301)
Q Consensus 167 g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (301)
|.|+++||+...+..+..+++.|++..++++|+..+. ++-+..+....|..... ..+ .+. .-....+
T Consensus 1 G~ASalKM~rS~~~KG~~AL~~e~~~aA~~~Gv~~~l-~~~l~~s~~~~~~~~~~----~~v-----~~~---~~ha~Rr 67 (112)
T d1i36a1 1 GDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDV-LEMLEYTEGNDFRESAI----SRL-----KSS---CIHARRR 67 (112)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHTTSCSSTHHHHH----HHH-----HHH---HHTHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHcCCccHHHHHH----HHh-----cCC---cchhhHH
Confidence 6899999999999999999999999999999998754 45555543222210000 000 000 0012346
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHCCCC
Q 022170 247 AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHD 283 (301)
Q Consensus 247 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g 283 (301)
..+++.+.++.++. +++.+.+++.++|++..+.+.+
T Consensus 68 ~~EM~Eia~tl~~~-l~P~m~~a~a~~~~~~~d~~~~ 103 (112)
T d1i36a1 68 YEEMKEVQDMLAEV-IDPVMPTCIIRIFDKLKDVKVS 103 (112)
T ss_dssp HHHHHHHHHHHHTT-SCCSHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHhcCCC
Confidence 67888899999884 8889999999999998765543
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.92 E-value=0.0043 Score=51.46 Aligned_cols=97 Identities=20% Similarity=0.165 Sum_probs=63.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCCccccccCCCC-------CCcccCCCCCC
Q 022170 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---SSSARCWSSDSYNPV-------PGVMEGVPASR 235 (301)
Q Consensus 167 g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~-~G~~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 235 (301)
|+|+.+||++|.+..+.+++++|++.+.++ .|.+.+++.+++. .+...|++.+..... .......+.+.
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~il~~kd~~~~~~ld~I~d~ 80 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDS 80 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCTTSSBSGGGSCCC
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCcCcchhhhhcc
Confidence 789999999999999999999999999987 5898888777754 455555554311000 00000001100
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHH
Q 022170 236 NYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 271 (301)
Q Consensus 236 ~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~ 271 (301)
. ... -.-......|-++|+|.|++.++.
T Consensus 81 a--~~k------GTG~Wt~~~Al~lgvp~p~I~~Av 108 (297)
T d2pgda1 81 A--GQK------GTGKWTAISALEYGVPVTLIGEAV 108 (297)
T ss_dssp C--CCC------SHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred c--cCC------CchHHHHHHHHHcCCCchHHHHHH
Confidence 0 000 112467788888999999998875
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.00038 Score=54.34 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=66.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|..+|+.+..-|.+|++||+...... .......+++|+++.||+|++++|-... .+.++.. ..++. .+++
T Consensus 55 IG~~va~~l~~fg~~v~~~d~~~~~~~----~~~~~~~~l~ell~~sDii~i~~plt~~-T~~li~~--~~l~~--mk~~ 125 (188)
T d1sc6a1 55 IGTQLGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPS-TKNMMGA--KEISL--MKPG 125 (188)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCCCC----TTCEECSCHHHHHHHCSEEEECCCSSTT-TTTCBCH--HHHHH--SCTT
T ss_pred chhhhhhhcccccceEeeccccccchh----hhhhhhhhHHHHHhhccceeecccCCcc-hhhhccH--HHHhh--CCCC
Confidence 478899999999999999998654321 1233456899999999999999996665 6666543 24443 4578
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|++|-...-.-..+.+.+.+
T Consensus 126 a~lIN~aRG~lvde~aL~~aL~~ 148 (188)
T d1sc6a1 126 SLLINASRGTVVDIPALADALAS 148 (188)
T ss_dssp EEEEECSCSSSBCHHHHHHHHHT
T ss_pred CEEEEcCcHHhhhhHHHHHHHHc
Confidence 99999985544444456666654
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=96.83 E-value=0.00065 Score=53.47 Aligned_cols=94 Identities=11% Similarity=0.031 Sum_probs=66.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
+|+.+|+.|..-|.+|++||+.+..... .. ....++++.++.||+|.+++|-... .+.++.. ..+.. .+++
T Consensus 56 IG~~va~~l~~fg~~v~~~d~~~~~~~~---~~-~~~~~l~~l~~~~D~v~~~~plt~~-T~~li~~--~~l~~--mk~~ 126 (199)
T d1dxya1 56 IGQVAIKLFKGFGAKVIAYDPYPMKGDH---PD-FDYVSLEDLFKQSDVIDLHVPGIEQ-NTHIINE--AAFNL--MKPG 126 (199)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSSCC---TT-CEECCHHHHHHHCSEEEECCCCCGG-GTTSBCH--HHHHH--SCTT
T ss_pred ccccccccccccceeeeccCCccchhhh---cc-hhHHHHHHHHHhcccceeeeccccc-ccccccH--HHhhc--cCCc
Confidence 4788999999999999999987653211 11 2245899999999999999997766 6666542 24443 4678
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhh
Q 022170 81 QLLIDSSTIDPQTSRNISAAVSN 103 (301)
Q Consensus 81 ~ivid~st~~p~~~~~~~~~~~~ 103 (301)
.++|+++-...-.-..+.+.+.+
T Consensus 127 a~lIN~aRG~vvde~aL~~aL~~ 149 (199)
T d1dxya1 127 AIVINTARPNLIDTQAMLSNLKS 149 (199)
T ss_dssp EEEEECSCTTSBCHHHHHHHHHT
T ss_pred eEEEecccHhhhhhHHHHHHHhc
Confidence 99999985544334455566553
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.79 E-value=0.0042 Score=46.71 Aligned_cols=81 Identities=11% Similarity=0.065 Sum_probs=59.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRP 80 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~ 80 (301)
.|..+|+.|...|-+|++||++|.+.-+..-.|..+ .++++++..+|+|+++..+....-.+ .++. .+.+
T Consensus 35 iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v-~~~~~a~~~adivvtaTGn~~vI~~e-------h~~~--MKdg 104 (163)
T d1li4a1 35 VGKGCAQALRGFGARVIITEIDPINALQAAMEGYEV-TTMDEACQEGNIFVTTTGCIDIILGR-------HFEQ--MKDD 104 (163)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSCSBCHH-------HHTT--CCTT
T ss_pred ccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEe-eehhhhhhhccEEEecCCCccchhHH-------HHHh--ccCC
Confidence 388999999999999999999997765555556654 57899999999999998854320122 2222 3567
Q ss_pred eEEEEeCCCCH
Q 022170 81 QLLIDSSTIDP 91 (301)
Q Consensus 81 ~ivid~st~~p 91 (301)
.++.+.+...-
T Consensus 105 aIL~N~Ghfd~ 115 (163)
T d1li4a1 105 AIVCNIGHFDV 115 (163)
T ss_dssp EEEEECSSSTT
T ss_pred eEEEEeccccc
Confidence 88888775543
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.52 E-value=0.0015 Score=44.12 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCCeEEEEcCCh-hhHHHHHhCCCCCCC-CHHHHHhcCCEEEEe
Q 022170 3 FRMASNLMKAGYKMAVHDVNC-NVMKMFSDMGVPTKE-TPFEVAEASDVVITM 53 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~-~~~~~l~~~g~~~~~-s~~e~~~~adiVi~~ 53 (301)
++||+.|.+.||+|+++|+.+ +..+.|.+.|++... ...+-+.++|+|+..
T Consensus 15 s~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~S 67 (89)
T d1j6ua1 15 SAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKT 67 (89)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEEC
T ss_pred HHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEe
Confidence 368999999999999999875 556788888987642 223334677877764
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.52 E-value=0.0029 Score=46.28 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhH-------HHHH----hCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCcc
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNVM-------KMFS----DMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGL 71 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~~-------~~l~----~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~ 71 (301)
..++..|.+.|++|.+||..-+.. +.+. ..+....+++.+++.++|+|+++++++. .+++...
T Consensus 36 ~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~D~ivi~t~h~~--f~~l~~~---- 109 (136)
T d1mv8a3 36 VELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDEL--FVDLVNK---- 109 (136)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHCSEEEECSCCGG--GHHHHHS----
T ss_pred HHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhhceEEEEEeCCHH--HHHHHHH----
Confidence 357888999999999999522111 1111 1135567899999999999999999765 6665432
Q ss_pred ccCCCCCCCeEEEEeCCCCHH
Q 022170 72 LQGGNSVRPQLLIDSSTIDPQ 92 (301)
Q Consensus 72 l~~~~~~~~~ivid~st~~p~ 92 (301)
..++++|+|+-++.+.
T Consensus 110 -----~~~~~~I~D~~~~~~~ 125 (136)
T d1mv8a3 110 -----TPSGKKLVDLVGFMPH 125 (136)
T ss_dssp -----CCTTCEEEESSSCCSS
T ss_pred -----hcCCCEEEECCCCCCh
Confidence 1245799999887653
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.45 E-value=0.0015 Score=47.53 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=43.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCC----CC---CHHHH-HhcCCEEEEecCCCc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT----KE---TPFEV-AEASDVVITMLPSSS 58 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~----~~---s~~e~-~~~adiVi~~vp~~~ 58 (301)
+|..+|+.|.+.||+|++.|+|+++++.+.+. +..+ .. .+.++ ++++|.++.+++++.
T Consensus 11 ~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~ 77 (132)
T d1lssa_ 11 VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE 77 (132)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred HHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHH
Confidence 48899999999999999999999999988754 4322 12 22233 467888888888764
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=96.39 E-value=0.0074 Score=45.18 Aligned_cols=81 Identities=16% Similarity=0.106 Sum_probs=60.0
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|++|...|-+|+++++||-++-+..-.|.++ .+++|++..+|++|+++......-.+ .+.. .+.+.
T Consensus 35 GrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn~~vI~~~-------h~~~--MKdga 104 (163)
T d1v8ba1 35 GKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVDVIKLE-------HLLK--MKNNA 104 (163)
T ss_dssp HHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSSSBCHH-------HHTT--CCTTC
T ss_pred chhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCCCccccHH-------HHHH--hhCCe
Confidence 78999999999999999999997655554457665 68999999999999999965420122 2222 34677
Q ss_pred EEEEeCCCCHH
Q 022170 82 LLIDSSTIDPQ 92 (301)
Q Consensus 82 ivid~st~~p~ 92 (301)
++.+.+....+
T Consensus 105 Il~N~GHfd~E 115 (163)
T d1v8ba1 105 VVGNIGHFDDE 115 (163)
T ss_dssp EEEECSSTTTS
T ss_pred EEEeccccchh
Confidence 88888765544
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.34 E-value=0.004 Score=47.16 Aligned_cols=79 Identities=19% Similarity=0.168 Sum_probs=58.3
Q ss_pred cHHHHHHHHhCCCeEEEEcCChh-hHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhc-CCCccccCCCCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN-GPNGLLQGGNSVR 79 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~-~~~~~l~~~~~~~ 79 (301)
|.+-|.||..+|.+|++--|.-. ..+...+.|.++ .+.+|+++.+|+|++.+||.. -.+++. ...+.+ .+
T Consensus 28 G~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v-~~~~eA~~~aDiim~L~PD~~--q~~vy~~~I~p~l-----k~ 99 (182)
T d1np3a2 28 GHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKV-ADVKTAVAAADVVMILTPDEF--QGRLYKEEIEPNL-----KK 99 (182)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEE-ECHHHHHHTCSEEEECSCHHH--HHHHHHHHTGGGC-----CT
T ss_pred hHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcccc-ccHHHHhhhcCeeeeecchHH--HHHHHHHhhhhhc-----CC
Confidence 67889999999999998776544 456666778765 689999999999999999654 466774 334433 35
Q ss_pred CeEEEEeCC
Q 022170 80 PQLLIDSST 88 (301)
Q Consensus 80 ~~ivid~st 88 (301)
|+.+.-..+
T Consensus 100 g~~L~FaHG 108 (182)
T d1np3a2 100 GATLAFAHG 108 (182)
T ss_dssp TCEEEESCC
T ss_pred CcEEEEecc
Confidence 666665544
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.23 E-value=0.0012 Score=51.80 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=43.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------CCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-------~~~s~~e~~~~adiVi~~vp~ 56 (301)
.|+.++..|+++||+|+++.|++++.......+++ -.+++.++++++|+||.++..
T Consensus 15 iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~ 77 (205)
T d1hdoa_ 15 TGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (205)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence 38899999999999999999999987655444432 223556778899999988864
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.22 E-value=0.0047 Score=51.39 Aligned_cols=98 Identities=16% Similarity=0.241 Sum_probs=62.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh---hcC-CCccccccCCCCCCcccCCCCCCCCCCCcc
Q 022170 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN---SSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGFA 242 (301)
Q Consensus 167 g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (301)
|+|+.+||++|.+..+.+++++|++.+.+..|.+.+++.+++. .++ ..|++.+.... .+. ..|-++.+-
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~~~~~~~i~~~f~~w~~~~~l~syL~eit~~---il~----~~d~~g~~l 73 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIA---AAR----AKDKDGSYL 73 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHH---HHH----CBCTTSSBG
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCeehHHHHHHHHH---HHh----hcCCCCchh
Confidence 7899999999999999999999999999999999887666644 332 45554321100 000 000000010
Q ss_pred hhh------HHHHHHHHHHHHHHcCCCchHHHHHH
Q 022170 243 SKL------MAKDLNLALASAKEVGVDCPLTSQAQ 271 (301)
Q Consensus 243 ~~~------~~kd~~~~~~~a~~~g~~~p~~~~~~ 271 (301)
++. ..-.=......|-++|+|+|++.++.
T Consensus 74 ~d~I~d~a~~kGTG~Wt~~~al~~gvp~p~i~~Av 108 (300)
T d1pgja1 74 TEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAV 108 (300)
T ss_dssp GGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHhcccccCCchHHHHHHHHHHcCCCccHHHHHH
Confidence 111 01122467777889999999987765
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.15 E-value=0.0067 Score=46.40 Aligned_cols=82 Identities=11% Similarity=0.124 Sum_probs=53.0
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCC-----------------------------CHHHHHhcCCEEEEe
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE-----------------------------TPFEVAEASDVVITM 53 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~-----------------------------s~~e~~~~adiVi~~ 53 (301)
..=++...+-|-.|+++|+++++.+++...+..... .+.+.+.++|+||.+
T Consensus 42 ~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l~~~l~~aDlVI~t 121 (183)
T d1l7da1 42 LQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITT 121 (183)
T ss_dssp HHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHHHHHHHhhhhheee
Confidence 333444556799999999999999999887643321 123446789999998
Q ss_pred cCCCccchhhhhcCCCccccCCCCCCCeEEEEeCC
Q 022170 54 LPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSST 88 (301)
Q Consensus 54 vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 88 (301)
+--+-....-++. +.+++. +++|.++||.+-
T Consensus 122 alipG~~aP~lit--~~mv~~--Mk~GSVIVDvai 152 (183)
T d1l7da1 122 ALIPGKPAPVLIT--EEMVTK--MKPGSVIIDLAV 152 (183)
T ss_dssp CCCTTSCCCCCSC--HHHHTT--SCTTCEEEETTG
T ss_pred eecCCcccceeeh--HHHHHh--cCCCcEEEEEee
Confidence 7655330122221 224443 468899999873
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.08 E-value=0.0026 Score=48.10 Aligned_cols=82 Identities=11% Similarity=0.146 Sum_probs=54.6
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCC---CCC----CCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCC
Q 022170 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---VPT----KETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGG 75 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g---~~~----~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~ 75 (301)
..=++...+.|-+|+++|+++++.+.+.... ... ...+++.++++|+||.++-.+-....-++. +..++.
T Consensus 45 ~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~aP~lIt--~~mv~~- 121 (168)
T d1pjca1 45 TEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVP--ASLVEQ- 121 (168)
T ss_dssp HHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBC--HHHHTT-
T ss_pred HHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcccCeeec--HHHHhh-
Confidence 3445556678999999999999998876642 111 124567889999999988755331222222 223443
Q ss_pred CCCCCeEEEEeCC
Q 022170 76 NSVRPQLLIDSST 88 (301)
Q Consensus 76 ~~~~~~ivid~st 88 (301)
+++|.++||.+.
T Consensus 122 -Mk~GSVIVDvai 133 (168)
T d1pjca1 122 -MRTGSVIVDVAV 133 (168)
T ss_dssp -SCTTCEEEETTC
T ss_pred -cCCCcEEEEeec
Confidence 468899999984
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.89 E-value=0.0036 Score=42.85 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCeEEEEcCC-hhhHHHHHhCCCCCCC-CHHHHHhcCCEEEEe
Q 022170 3 FRMASNLMKAGYKMAVHDVN-CNVMKMFSDMGVPTKE-TPFEVAEASDVVITM 53 (301)
Q Consensus 3 ~~lA~~L~~~G~~V~~~dr~-~~~~~~l~~~g~~~~~-s~~e~~~~adiVi~~ 53 (301)
+++|+.|.+.||+|+++|+. ....+.+.+.|+.+.. ...+-+.+.|+|+..
T Consensus 22 s~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S 74 (96)
T d1p3da1 22 SGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVS 74 (96)
T ss_dssp HHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEEC
T ss_pred HHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEEC
Confidence 57899999999999999976 4456777788875532 223335677877764
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=95.83 E-value=0.0039 Score=52.88 Aligned_cols=69 Identities=12% Similarity=0.088 Sum_probs=46.9
Q ss_pred CeEEEEcCChhhHHHHHhC-----CC--CCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEe
Q 022170 14 YKMAVHDVNCNVMKMFSDM-----GV--PTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS 86 (301)
Q Consensus 14 ~~V~~~dr~~~~~~~l~~~-----g~--~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~ 86 (301)
.+|.+|+|++++.+++.+. |. ..++++++++++||+|++|++++. ...++.. ..+ .+|..|.-.
T Consensus 154 ~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~s--~~Pv~~~--~~l-----~pG~hI~ai 224 (340)
T d1x7da_ 154 EEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA--YATIITP--DML-----EPGMHLNAV 224 (340)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS--EEEEECG--GGC-----CTTCEEEEC
T ss_pred eeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccCC--CCcccch--hhc-----CCCCEEeec
Confidence 4799999999998777542 43 458899999999999999998653 2334432 122 355555555
Q ss_pred CCCCH
Q 022170 87 STIDP 91 (301)
Q Consensus 87 st~~p 91 (301)
++-.|
T Consensus 225 Gs~~p 229 (340)
T d1x7da_ 225 GGDCP 229 (340)
T ss_dssp SCCBT
T ss_pred ccchh
Confidence 55444
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=95.80 E-value=0.022 Score=42.64 Aligned_cols=89 Identities=15% Similarity=0.201 Sum_probs=60.9
Q ss_pred HHHHHhC-CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeE
Q 022170 6 ASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQL 82 (301)
Q Consensus 6 A~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~i 82 (301)
...+.+. ++++. +||+++++.+.+.+. ++...++.+++.++.|+|++|+|++.. . +.... .+. .+..+
T Consensus 18 ~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h-~-~~~~~---al~----~gk~V 88 (164)
T d1tlta1 18 LPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASH-F-DVVST---LLN----AGVHV 88 (164)
T ss_dssp HHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHH-H-HHHHH---HHH----TTCEE
T ss_pred HHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhc-c-ccccc---ccc----cccee
Confidence 3445443 56654 789999998877643 778888999999999999999997654 3 33221 232 12356
Q ss_pred EEEe-CCCCHHHHHHHHHHHhh
Q 022170 83 LIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 83 vid~-st~~p~~~~~~~~~~~~ 103 (301)
+++- -+.++.+.+++.+...+
T Consensus 89 ~~EKPla~~~~e~~~l~~~a~~ 110 (164)
T d1tlta1 89 CVDKPLAENLRDAERLVELAAR 110 (164)
T ss_dssp EEESSSCSSHHHHHHHHHHHHH
T ss_pred eccccccCCHHHHHHHHHHHHH
Confidence 6665 35678888888877654
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.70 E-value=0.011 Score=49.78 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=48.5
Q ss_pred CeEEEEcCChhhHHHHHh----CCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEEEEeCCC
Q 022170 14 YKMAVHDVNCNVMKMFSD----MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 89 (301)
Q Consensus 14 ~~V~~~dr~~~~~~~l~~----~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 89 (301)
.+|.+|+|++++.+.+.+ .+.....++.+++.+||+|++|+|... .++.. ..+ .+|..|+..++.
T Consensus 151 ~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~----P~~~~--~~l-----~~G~hv~~iGs~ 219 (320)
T d1omoa_ 151 GEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRK----PVVKA--EWV-----EEGTHINAIGAD 219 (320)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSS----CCBCG--GGC-----CTTCEEEECSCC
T ss_pred hhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCcc----cccch--hhc-----CCCCeEeecCCc
Confidence 479999999999876644 467777788999999999999998543 33322 122 356677766666
Q ss_pred CHH
Q 022170 90 DPQ 92 (301)
Q Consensus 90 ~p~ 92 (301)
.|.
T Consensus 220 ~p~ 222 (320)
T d1omoa_ 220 GPG 222 (320)
T ss_dssp STT
T ss_pred ccc
Confidence 554
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=95.31 E-value=0.0057 Score=47.33 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=27.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|..+|+.|++.|++|++.+|++++.+.+.+
T Consensus 35 IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~ 65 (191)
T d1luaa1 35 VGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 65 (191)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhhcccchHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.85 E-value=0.064 Score=40.68 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=62.8
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhC-C----CCCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCcc
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDM-G----VPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGL 71 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g----~~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~ 71 (301)
||...+..|... +++|. ++|+++++.+.+.+. + .+..++++++++ +.|+|++|+|+... ..-... .
T Consensus 12 ~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h-~~~~~~----~ 86 (184)
T d1ydwa1 12 IARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLH-VEWAIK----A 86 (184)
T ss_dssp THHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGH-HHHHHH----H
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhh-cchhhh----h
Confidence 577777778765 56766 679999988776543 3 345689999884 57999999997654 333221 2
Q ss_pred ccCCCCCCCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 72 LQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 72 l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
++ .+..++++- -+.++++.+++.+...+
T Consensus 87 l~----~g~~v~~EKP~~~~~~e~~~l~~~~~~ 115 (184)
T d1ydwa1 87 AE----KGKHILLEKPVAMNVTEFDKIVDACEA 115 (184)
T ss_dssp HT----TTCEEEECSSCSSSHHHHHHHHHHHHT
T ss_pred hh----ccceeecccccccCHHHHHHHHHHHHh
Confidence 32 122455654 24578888888887764
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.79 E-value=0.019 Score=40.45 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=45.9
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
|..+.++|.+.||+|+-.+.+.+.+ .|.....|+.++-...|++++++|.. . +.+++.+
T Consensus 17 g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~vp~~-~-~~~~l~~ 75 (116)
T d1y81a1 17 GNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPPK-V-GLQVAKE 75 (116)
T ss_dssp HHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCHH-H-HHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEccccccc-----cCccccccchhccccceEEEEEeCHH-H-HHHHHHH
Confidence 5678899999999988887665433 47788889998878899999999944 3 6666653
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=94.78 E-value=0.046 Score=40.94 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=40.2
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.+++.-|.+.|..|++.+.. +.++.+.++++|+|+.++.-+.- +. ...+ .++.
T Consensus 50 G~Pla~lL~~~gatVt~~h~~--------------t~~l~~~~~~ADivI~a~G~p~~-i~------~~~v-----k~g~ 103 (166)
T d1b0aa1 50 GRPMSMELLLAGCTTTVTHRF--------------TKNLRHHVENADLLIVAVGKPGF-IP------GDWI-----KEGA 103 (166)
T ss_dssp HHHHHHHHHTTTCEEEEECSS--------------CSCHHHHHHHCSEEEECSCCTTC-BC------TTTS-----CTTC
T ss_pred cHHHHHHHHHhhccccccccc--------------cchhHHHHhhhhHhhhhccCccc-cc------cccc-----CCCc
Confidence 566666666666666655432 24677788999999999985442 22 1222 3678
Q ss_pred EEEEeCCC
Q 022170 82 LLIDSSTI 89 (301)
Q Consensus 82 ivid~st~ 89 (301)
++||.+..
T Consensus 104 vvIDvGi~ 111 (166)
T d1b0aa1 104 IVIDVGIN 111 (166)
T ss_dssp EEEECCCE
T ss_pred EEEecCce
Confidence 99998753
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=94.56 E-value=0.023 Score=44.37 Aligned_cols=81 Identities=17% Similarity=0.135 Sum_probs=55.6
Q ss_pred cHHHHHHHHhCC------CeEEEEc-CChhhHHHHHhCCCCC----CCCHHHHHhcCCEEEEecCCCccchhhhhcCCCc
Q 022170 2 GFRMASNLMKAG------YKMAVHD-VNCNVMKMFSDMGVPT----KETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 70 (301)
Q Consensus 2 G~~lA~~L~~~G------~~V~~~d-r~~~~~~~l~~~g~~~----~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~ 70 (301)
|.+-|.||.++| ..|.+-= .+....++..+.|... ..+.+|+++.+|+|++.+||.. -.+++..
T Consensus 56 G~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe~--Q~~vy~~--- 130 (226)
T d1qmga2 56 APAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSA--QADNYEK--- 130 (226)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHHH--HHHHHHH---
T ss_pred HHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchHH--HHHHHHH---
Confidence 678899999965 4566543 3334566777778763 3478999999999999999654 5777753
Q ss_pred cccCCCCCCCeEEEEeCCC
Q 022170 71 LLQGGNSVRPQLLIDSSTI 89 (301)
Q Consensus 71 ~l~~~~~~~~~ivid~st~ 89 (301)
+.+. ..+|+++.-.-+.
T Consensus 131 I~p~--Lk~G~~L~FaHGF 147 (226)
T d1qmga2 131 VFSH--MKPNSILGLSHGF 147 (226)
T ss_dssp HHHH--SCTTCEEEESSSH
T ss_pred HHHh--cCCCceeeecchh
Confidence 4443 2466677655443
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.47 E-value=0.083 Score=39.68 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=39.2
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|.++|.-|.+.|..|++++.+ +.++.+.+.++|+|+.+++.+.- ++. ..+ .++.
T Consensus 52 GrPLa~lL~~~gatVt~~~~~--------------t~~l~~~~~~aDivi~a~G~~~~-i~~------~~v-----k~g~ 105 (170)
T d1a4ia1 52 GAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVATGQPEM-VKG------EWI-----KPGA 105 (170)
T ss_dssp HHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC-BCG------GGS-----CTTC
T ss_pred chHHHHHHHhccCceEEEecc--------------cccHHHHHhhccchhhccccccc-ccc------ccc-----cCCC
Confidence 455555555555555554432 34566778899999999996543 222 122 3678
Q ss_pred EEEEeCCCC
Q 022170 82 LLIDSSTID 90 (301)
Q Consensus 82 ivid~st~~ 90 (301)
++||.+...
T Consensus 106 iviDvgi~~ 114 (170)
T d1a4ia1 106 IVIDCGINY 114 (170)
T ss_dssp EEEECCCBC
T ss_pred eEeccCccc
Confidence 999997643
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=94.44 E-value=0.032 Score=41.98 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=51.4
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----CCCCCCCHHH-HHhcCCEEEEecCCCccchhhhhcCCCccccCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVPTKETPFE-VAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGN 76 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g~~~~~s~~e-~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~ 76 (301)
+++++..|.+.|.+|++++|++++.+.+.+. +.....+..+ ....+|+||-|+|-... .+...-....
T Consensus 30 arai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~--~~~~~~~~~~----- 102 (170)
T d1nyta1 30 SRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS--GDIPAIPSSL----- 102 (170)
T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG--TCCCCCCGGG-----
T ss_pred HHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcc--cCCCCCcHHH-----
Confidence 4678888999999999999999999887653 1111112222 23578999999985432 1111000111
Q ss_pred CCCCeEEEEeCCCCHH
Q 022170 77 SVRPQLLIDSSTIDPQ 92 (301)
Q Consensus 77 ~~~~~ivid~st~~p~ 92 (301)
..++.+++|.--....
T Consensus 103 ~~~~~~v~D~vY~P~~ 118 (170)
T d1nyta1 103 IHPGIYCYDMFYQKGK 118 (170)
T ss_dssp CCTTCEEEESCCCSSC
T ss_pred hccCcEEEEeecCCCC
Confidence 2345788898754433
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=93.96 E-value=0.028 Score=43.74 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=44.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHH-hcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adiVi~~vp 55 (301)
+|..+|+.|.+.|.+|+++|.++++++.....|.+.. +++++. ..||+++-|--
T Consensus 38 VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~-~~~~~~~~~~DI~iPcA~ 92 (201)
T d1c1da1 38 VGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAM 92 (201)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSC
T ss_pred HHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccccc-Cccccccccceeeecccc
Confidence 4789999999999999999999999998888887654 455554 47999887654
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.79 E-value=0.026 Score=41.11 Aligned_cols=78 Identities=9% Similarity=0.184 Sum_probs=54.0
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
|..+..+|.++||+|+..+...+.+ .|..+..++.+.-...|+|++++| +.. +.+++.+. .+. . ...
T Consensus 35 g~~v~~~L~~~g~~v~pVnP~~~~i-----~G~~~~~sl~dlp~~iD~v~i~vp-~~~-~~~~~~e~---~~~--g-~k~ 101 (139)
T d2d59a1 35 ANIVMKYLLEHGYDVYPVNPKYEEV-----LGRKCYPSVLDIPDKIEVVDLFVK-PKL-TMEYVEQA---IKK--G-AKV 101 (139)
T ss_dssp HHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGCSSCCSEEEECSC-HHH-HHHHHHHH---HHH--T-CSE
T ss_pred hHHHHHHHHHCCCEEEEECCccccc-----CCCcccccccccCccceEEEEEeC-HHH-HHHHHHHH---HHh--C-CCE
Confidence 5678899999999988877654322 377888899988788999999999 444 67776542 221 1 224
Q ss_pred EEEEeCCCCHH
Q 022170 82 LLIDSSTIDPQ 92 (301)
Q Consensus 82 ivid~st~~p~ 92 (301)
+++..++.+++
T Consensus 102 v~~~~G~~~ee 112 (139)
T d2d59a1 102 VWFQYNTYNRE 112 (139)
T ss_dssp EEECTTCCCHH
T ss_pred EEEeccccCHH
Confidence 66655555543
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=93.23 E-value=0.025 Score=41.64 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=38.4
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhHHHHH----h----CC--CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFS----D----MG--VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~~~l~----~----~g--~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.++|..|+..| .+|.++|+++++.+... . .+ .....+.+ .+++||+|+++...+
T Consensus 16 VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag~~ 83 (146)
T d1ez4a1 16 VGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAGAP 83 (146)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCCC-
T ss_pred HHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEecccc
Confidence 4889999999888 58999999998754322 1 11 12233544 468999999987654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.15 Score=38.00 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=40.7
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCCCCC-----CCHHHHH--------hcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTK-----ETPFEVA--------EASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~~~-----~s~~e~~--------~~adiVi~~vp~~~~ 59 (301)
||...++.+...|. +|+++|+++++.+...+.|+... .++.+.. ...|+||-|++.+..
T Consensus 38 iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~ 110 (171)
T d1pl8a2 38 IGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEAS 110 (171)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHH
T ss_pred cHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccCCchh
Confidence 35666666777888 79999999999998888886432 2333322 146888888875543
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=92.84 E-value=0.049 Score=40.86 Aligned_cols=54 Identities=11% Similarity=0.262 Sum_probs=39.7
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
++++++..|.+.|. +|++++|++++.+.+.+. +........ ..++|+||-|+|-
T Consensus 28 aarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpi 83 (167)
T d1npya1 28 MAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSI 83 (167)
T ss_dssp THHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSST
T ss_pred HHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheecccc
Confidence 46788999999996 799999999999888754 322222211 2478999999884
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=92.54 E-value=0.18 Score=37.29 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=57.8
Q ss_pred HHHHHhC-CCeEEEEcCChhhHHHHHhC-CC-CCCCCHHHHHh-cCCEEEEecCCCccchhhhhcCCCccccCCCCCCCe
Q 022170 6 ASNLMKA-GYKMAVHDVNCNVMKMFSDM-GV-PTKETPFEVAE-ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 81 (301)
Q Consensus 6 A~~L~~~-G~~V~~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~-~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~ 81 (301)
...|.+. +.++.++|+++++.+.+.+. +. ...++.+++++ +.|+|++|+|+... ..-+.. .++. +..
T Consensus 18 ~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H-~~~~~~----al~~----gk~ 88 (167)
T d1xeaa1 18 LPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVH-STLAAF----FLHL----GIP 88 (167)
T ss_dssp HHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGH-HHHHHH----HHHT----TCC
T ss_pred HHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccc-cccccc----cccc----ccc
Confidence 3444444 45788899999999888664 43 34677777764 67999999997654 333321 2321 224
Q ss_pred EEEEe-CCCCHHHHHHHHHHHhh
Q 022170 82 LLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 82 ivid~-st~~p~~~~~~~~~~~~ 103 (301)
++++- -+.+....+++.+...+
T Consensus 89 V~~EKP~~~~~~e~~~l~~~a~~ 111 (167)
T d1xeaa1 89 TFVDKPLAASAQECENLYELAEK 111 (167)
T ss_dssp EEEESCSCSSHHHHHHHHHHHHH
T ss_pred cccCCCCcCCHHHHHHHHHHHHH
Confidence 66664 25677888888887664
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.49 E-value=0.037 Score=40.72 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=39.8
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHHH----h------CCCCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFS----D------MGVPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l~----~------~g~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.++|..|+..|. ++.++|+++++.+... . ..........+.+++||+|+++...+
T Consensus 17 vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~~ 85 (148)
T d1ldna1 17 VGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN 85 (148)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecccc
Confidence 48899999998885 7999999998753221 1 12223334456778999999987754
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=92.48 E-value=0.25 Score=37.06 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=58.4
Q ss_pred HHHHHhCC--CeEE-EEcCChhhHHHHHhC-CC-CCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 6 ASNLMKAG--YKMA-VHDVNCNVMKMFSDM-GV-PTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 6 A~~L~~~G--~~V~-~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
...+.+.+ ++|. ++|+++++.+.+.+. +. ...++.+|+++ +.|+|++|+|+... .+++.. .++ .
T Consensus 20 ~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h--~~~~~~---al~----~ 90 (181)
T d1zh8a1 20 LPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN--LPFIEK---ALR----K 90 (181)
T ss_dssp HHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH--HHHHHH---HHH----T
T ss_pred HHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccc--cccccc---ccc----c
Confidence 45555533 4555 789999998887654 44 45789999986 47899999997653 333321 232 1
Q ss_pred CCeEEEEe-CCCCHHHHHHHHHHHhh
Q 022170 79 RPQLLIDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 79 ~~~ivid~-st~~p~~~~~~~~~~~~ 103 (301)
+..++++- -+.+.++.+++.+...+
T Consensus 91 gk~V~~EKPl~~~~~e~~~l~~~~~~ 116 (181)
T d1zh8a1 91 GVHVICEKPISTDVETGKKVVELSEK 116 (181)
T ss_dssp TCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred chhhhcCCCCcCCHHHHHHHHHHHHH
Confidence 23466665 35678888888887764
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=92.24 E-value=0.082 Score=39.04 Aligned_cols=55 Identities=15% Similarity=-0.048 Sum_probs=39.9
Q ss_pred cHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC--------C----CCCCCCHHHHHhcCCEEEEecCC
Q 022170 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM--------G----VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 2 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~--------g----~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
|.++|..|...++ ++.++|+++++++..... + ....++.++++++||+|+++...
T Consensus 19 G~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag~ 86 (154)
T d1pzga1 19 GGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL 86 (154)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred HHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEeccc
Confidence 7888888888885 799999998876433221 1 12235667888999999998853
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=92.15 E-value=0.044 Score=36.72 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=31.1
Q ss_pred cHHHHHHHHhCCCeEEEEcCChh--hHHHHHhCCCCCC--CCHHHHHhcCCEEEEe
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTK--ETPFEVAEASDVVITM 53 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~--~~~~l~~~g~~~~--~s~~e~~~~adiVi~~ 53 (301)
|.+.|+.|.+.|++|++||.++. ..+.+.+ +.... ....+...+.|.|+++
T Consensus 17 G~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~vi~S 71 (93)
T d2jfga1 17 GLSCVDFFLARGVTPRVMDTRMTPPGLDKLPE-AVERHTGSLNDEWLMAADLIVAS 71 (93)
T ss_dssp HHHHHHHHHHTTCCCEEEESSSSCTTGGGSCT-TSCEEESBCCHHHHHHCSEEEEC
T ss_pred HHHHHHHHHHCCCEEEEeeCCcCchhHHHHhh-ccceeecccchhhhccCCEEEEC
Confidence 77899999999999999987543 2233322 22211 1123445666776664
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=91.74 E-value=0.24 Score=36.57 Aligned_cols=35 Identities=9% Similarity=0.071 Sum_probs=28.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 35 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~ 35 (301)
||...++.+...|.+|+++++++++.+.+.+.|+.
T Consensus 38 vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~ 72 (170)
T d1e3ja2 38 IGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD 72 (170)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred cchhhHhhHhhhcccccccchHHHHHHHHHHcCCc
Confidence 36666777777899999999999999888887653
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.16 E-value=0.07 Score=42.56 Aligned_cols=32 Identities=9% Similarity=0.087 Sum_probs=28.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|.++|+.|++.|++|.+.+|++++.+++.+.
T Consensus 19 IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~ 50 (244)
T d1pr9a_ 19 IGRGTVQALHATGARVVAVSRTQADLDSLVRE 50 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh
Confidence 58999999999999999999999998877654
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=91.08 E-value=0.072 Score=42.82 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=27.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
||.++|+.|++.|++|.+++|++++.+++.+
T Consensus 14 IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~ 44 (257)
T d2rhca1 14 IGLEIARRLGKEGLRVFVCARGEEGLRTTLK 44 (257)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776654
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=91.02 E-value=0.026 Score=42.63 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=36.9
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----C-CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----G-VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g-~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+.+++..|.+.+-+|++++|++++++.+.+. + .............+|+||-|+|-.
T Consensus 30 arai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 30 TKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG 90 (171)
T ss_dssp HHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred HHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence 4667777888778999999999999888653 1 111111111235678888888843
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.074 Score=42.78 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=27.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++++|++++++++.+
T Consensus 22 IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~ 52 (257)
T d1xg5a_ 22 IGAAVARALVQQGLKVVGCARTVGNIEELAA 52 (257)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4899999999999999999999998877653
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.97 E-value=0.075 Score=42.43 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=28.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|..|+++|++|.+++|++++++++.+
T Consensus 19 IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~ 49 (244)
T d1yb1a_ 19 IGRLTAYEFAKLKSKLVLWDINKHGLEETAA 49 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998877754
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=90.85 E-value=0.077 Score=42.31 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=27.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
||.++|+.|++.|++|.+.+|++++.+++.+
T Consensus 16 IG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~ 46 (243)
T d1q7ba_ 16 IGRAIAETLAARGAKVIGTATSENGAQAISD 46 (243)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=90.72 E-value=0.081 Score=42.59 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=27.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
||.++|+.|++.|++|.+++|++++++++.+
T Consensus 20 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 50 (259)
T d2ae2a_ 20 IGYGIVEELASLGASVYTCSRNQKELNDCLT 50 (259)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998876643
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=90.68 E-value=0.45 Score=38.86 Aligned_cols=109 Identities=10% Similarity=0.111 Sum_probs=74.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhhcC-CCccccccCCCCCCcccCCC-CCCC-C
Q 022170 167 GNGAAAKICNNLTMAVSMLGVSEALTLGQSL------GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVP-ASRN-Y 237 (301)
Q Consensus 167 g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~~------G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~-~ 237 (301)
.....++.+.|++.+..+...+|++.+.++. ++|..++.++++.|+ .+|+++..... .+.... +..- +
T Consensus 138 ~~~~~i~~l~~al~~~~i~syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~---a~~~~~~l~nl~~ 214 (297)
T d2pgda1 138 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKD---AFDRNPGLQNLLL 214 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHH---HHHHCTTCSCGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHH---HHHhCCCccchhh
Confidence 4567789999999999999999999999753 788999999999886 44554431110 000000 0000 0
Q ss_pred CCCc--chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 022170 238 GGGF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 278 (301)
Q Consensus 238 ~~~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 278 (301)
++.| .+....++++.+...+-+.|+|+|.+.+++..|+.-.
T Consensus 215 ~~~~~~~l~~~~~~~r~~v~~ai~~gip~P~lssaL~y~~~~~ 257 (297)
T d2pgda1 215 DDFFKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYR 257 (297)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhccHHHHHHHHHHHHcCCChHHHHHHHHHHHHhc
Confidence 1111 2344555678899999999999999999998776544
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.55 E-value=0.21 Score=36.20 Aligned_cols=57 Identities=12% Similarity=0.045 Sum_probs=40.8
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCC---------CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMG---------VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g---------~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|+++|..|...|. ++.++|.++.+.+.+--.. .....+..+.+++||+|+++-..+
T Consensus 12 VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~ 79 (144)
T d1mlda1 12 IGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79 (144)
T ss_dssp THHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcC
Confidence 58999999998886 6889999877654432221 112345678889999999987643
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.53 E-value=0.087 Score=42.20 Aligned_cols=32 Identities=9% Similarity=0.245 Sum_probs=29.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
||.++|+.|++.|++|.+.+|++++.+.+.+.
T Consensus 18 IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~ 49 (250)
T d1ydea1 18 IGAGIVRAFVNSGARVVICDKDESGGRALEQE 49 (250)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence 58999999999999999999999998887654
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=90.52 E-value=0.14 Score=37.41 Aligned_cols=59 Identities=5% Similarity=-0.029 Sum_probs=40.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHH----HHHhCCCCCC----CC---HHHH-HhcCCEEEEecCCCcc
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMK----MFSDMGVPTK----ET---PFEV-AEASDVVITMLPSSSH 59 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~----~l~~~g~~~~----~s---~~e~-~~~adiVi~~vp~~~~ 59 (301)
+|..++..|.+.|++|++.+.++++.. .+...|..+. ++ +.++ ++.||.|+++++++..
T Consensus 14 ~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~ 84 (153)
T d1id1a_ 14 LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD 84 (153)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence 378899999999999999999987543 3333343221 12 2333 4679999999987653
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.46 E-value=0.076 Score=42.37 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=28.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|.++|+.|+++|++|.+.+|++++.+++.+.
T Consensus 18 IG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~ 49 (245)
T d2ag5a1 18 IGQAAALAFAREGAKVIATDINESKLQELEKY 49 (245)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHGGGGGS
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc
Confidence 58999999999999999999999988877654
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.26 E-value=0.22 Score=37.39 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=25.5
Q ss_pred cHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCC
Q 022170 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGV 34 (301)
Q Consensus 2 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~ 34 (301)
|...++.+...|. +|++.++++++.+.+.+.|+
T Consensus 41 G~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa 74 (182)
T d1vj0a2 41 GLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 74 (182)
T ss_dssp HHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred chhheecccccccccccccccccccccccccccc
Confidence 4555555666786 79999999999988887765
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=90.26 E-value=0.094 Score=42.20 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=27.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+.+|++++.+++.+
T Consensus 17 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 47 (260)
T d1zema1 17 IGLATALRLAEEGTAIALLDMNREALEKAEA 47 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776653
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=90.04 E-value=0.11 Score=41.79 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=28.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
||.++|+.|++.|++|.+.+|++++.+++.+.
T Consensus 17 IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~ 48 (254)
T d1hdca_ 17 LGAEAARQAVAAGARVVLADVLDEEGAATARE 48 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 58999999999999999999999988777654
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.03 E-value=0.1 Score=41.85 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=27.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+.+|++++.+++.+
T Consensus 13 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 43 (255)
T d1gega_ 13 IGKAIALRLVKDGFAVAIADYNDATAKAVAS 43 (255)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776543
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=89.98 E-value=0.14 Score=40.07 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=54.3
Q ss_pred CCeEE-EEcCChhhHHHHHhC-CCC-----CCCCHHHHHh--cCCEEEEecCCCccchhhhhcCCCccccCCCCCCCeEE
Q 022170 13 GYKMA-VHDVNCNVMKMFSDM-GVP-----TKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLL 83 (301)
Q Consensus 13 G~~V~-~~dr~~~~~~~l~~~-g~~-----~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~~~~iv 83 (301)
+.+|. ++||++++.+.+.+. |+. ..+|.+++++ +.|+|++|+|+... ..-+.. .+. .+..++
T Consensus 58 ~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~H-~~~~~~----al~----~gk~v~ 128 (221)
T d1h6da1 58 HSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH-AEFAIR----AFK----AGKHVM 128 (221)
T ss_dssp SEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH-HHHHHH----HHH----TTCEEE
T ss_pred CceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchhhh-hhHHHH----hhh----cchhhh
Confidence 55665 789999998877654 442 3578888885 58899999997654 332222 222 122466
Q ss_pred EEe-CCCCHHHHHHHHHHHhh
Q 022170 84 IDS-STIDPQTSRNISAAVSN 103 (301)
Q Consensus 84 id~-st~~p~~~~~~~~~~~~ 103 (301)
++. -+..+++..++.+...+
T Consensus 129 ~EKPla~~~~e~~~l~~~a~~ 149 (221)
T d1h6da1 129 CEKPMATSVADCQRMIDAAKA 149 (221)
T ss_dssp ECSSCCSSHHHHHHHHHHHHH
T ss_pred cCCCccCCHHHHHHHHHHHHh
Confidence 654 35688888888877654
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.97 E-value=0.1 Score=41.56 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=28.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|.++|+.|++.|++|.+.+|++++.+.+.+.
T Consensus 18 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~ 49 (244)
T d1nffa_ 18 MGASHVRAMVAEGAKVVFGDILDEEGKAMAAE 49 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 58999999999999999999999988777643
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=89.94 E-value=0.078 Score=38.27 Aligned_cols=61 Identities=15% Similarity=0.261 Sum_probs=45.4
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
|..+.++|.+.||++..++.++.. +.+ .|.....++.+.-...|+|++++|. .. +.+++.+
T Consensus 29 g~~v~~~L~~~g~~~~~v~~~~~~-~~i--~g~~~~~~l~~i~~~iD~v~v~~p~-~~-v~~~v~~ 89 (136)
T d1iuka_ 29 AHYVPRYLREQGYRVLPVNPRFQG-EEL--FGEEAVASLLDLKEPVDILDVFRPP-SA-LMDHLPE 89 (136)
T ss_dssp HHHHHHHHHHTTCEEEEECGGGTT-SEE--TTEECBSSGGGCCSCCSEEEECSCH-HH-HTTTHHH
T ss_pred hHHHHHHHhcCCCCceEEEecccc-cee--eceecccchhhccCCCceEEEeccH-HH-HHHHHHH
Confidence 667888999999999999876532 122 3677788888887789999999994 43 5666543
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.93 E-value=0.28 Score=36.71 Aligned_cols=78 Identities=21% Similarity=0.163 Sum_probs=47.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhh-HHHH-----HhCC-----CCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNV-MKMF-----SDMG-----VPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 69 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~-~~~l-----~~~g-----~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~ 69 (301)
.|.+||.-|.+.|..|+..+++... ...- ...+ ....+.+.+....+|+||.+++.+. .. +. .
T Consensus 41 VG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsavG~p~--~~--i~--~ 114 (171)
T d1edza1 41 VGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSEN--YK--FP--T 114 (171)
T ss_dssp THHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCTT--CC--BC--T
T ss_pred cHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEEccCCCc--cc--cC--h
Confidence 4889999999999999888754221 1000 0000 0011236677789999999999543 11 11 1
Q ss_pred ccccCCCCCCCeEEEEeCCC
Q 022170 70 GLLQGGNSVRPQLLIDSSTI 89 (301)
Q Consensus 70 ~~l~~~~~~~~~ivid~st~ 89 (301)
+++ .+|.++||.+..
T Consensus 115 d~i-----k~GavvIDvGi~ 129 (171)
T d1edza1 115 EYI-----KEGAVCINFACT 129 (171)
T ss_dssp TTS-----CTTEEEEECSSS
T ss_pred hhc-----ccCceEeecccc
Confidence 232 367899999754
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.87 E-value=0.1 Score=42.20 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=27.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
||.++|+.|++.|++|.+.+|++++.+++.+
T Consensus 17 IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~ 47 (272)
T d1xkqa_ 17 IGRTTAILFAQEGANVTITGRSSERLEETRQ 47 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776543
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.82 E-value=0.11 Score=41.35 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=28.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|.++|+.|++.|++|.+.+|++++.+++.+.
T Consensus 17 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~ 48 (242)
T d1cyda_ 17 IGRDTVKALHASGAKVVAVTRTNSDLVSLAKE 48 (242)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence 58999999999999999999999988877654
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=89.80 E-value=0.11 Score=41.56 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=27.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+.+|++++.+++.+
T Consensus 18 IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~ 48 (253)
T d1hxha_ 18 VGLEVVKLLLGEGAKVAFSDINEAAGQQLAA 48 (253)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=89.79 E-value=0.11 Score=41.20 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=28.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|.++|+.|++.|++|.+.+|++++.+++.+.
T Consensus 17 IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~ 48 (242)
T d1ulsa_ 17 IGRATLELFAKEGARLVACDIEEGPLREAAEA 48 (242)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 58999999999999999999999988877654
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=89.76 E-value=0.14 Score=37.11 Aligned_cols=55 Identities=22% Similarity=0.164 Sum_probs=37.9
Q ss_pred cHHHHHHHHhCCC--eEEEEcCChhhHHHHHhC---------CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 2 GFRMASNLMKAGY--KMAVHDVNCNVMKMFSDM---------GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 2 G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~---------g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
|.++|..|+.++. ++.++|+++++++..... .....++..+.+++||+|+++...
T Consensus 12 G~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~ 77 (140)
T d1a5za1 12 GSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGV 77 (140)
T ss_dssp HHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred HHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEeccc
Confidence 7888888887774 799999998876432211 122233445668899999999754
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=89.76 E-value=0.11 Score=42.23 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=27.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus 17 IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~ 47 (276)
T d1bdba_ 17 LGRALVDRFVAEGAKVAVLDKSAERLAELET 47 (276)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998876654
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.62 E-value=0.1 Score=41.48 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=27.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|+.++.+.+.+
T Consensus 17 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 47 (248)
T d2o23a1 17 LGLATAERLVGQGASAVLLDLPNSGGEAQAK 47 (248)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 5899999999999999999999988776654
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=89.50 E-value=0.12 Score=41.36 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=27.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
||.++|+.|++.|++|.+.+|++++.+.+.+
T Consensus 18 IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~ 48 (251)
T d1zk4a1 18 IGLAIATKFVEEGAKVMITGRHSDVGEKAAK 48 (251)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=89.43 E-value=0.12 Score=41.52 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=27.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
||.++|..|++.|++|.+.+|++++.+++.+
T Consensus 18 IG~aia~~la~~G~~V~i~~r~~~~l~~~~~ 48 (258)
T d1ae1a_ 18 IGYAIVEELAGLGARVYTCSRNEKELDECLE 48 (258)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=89.41 E-value=0.12 Score=41.60 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=27.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+.+|++++.+++.+
T Consensus 17 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 47 (264)
T d1spxa_ 17 IGRATAVLFAREGAKVTITGRHAERLEETRQ 47 (264)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=89.38 E-value=0.09 Score=42.08 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=27.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+++|++++.+++.+
T Consensus 22 IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~ 52 (251)
T d2c07a1 22 IGREIAKMLAKSVSHVICISRTQKSCDSVVD 52 (251)
T ss_dssp HHHHHHHHHTTTSSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776653
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=89.38 E-value=0.12 Score=41.48 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=27.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+.+|++++.+...+
T Consensus 16 IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~ 46 (258)
T d1iy8a_ 16 LGRATAVRLAAEGAKLSLVDVSSEGLEASKA 46 (258)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998766543
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=89.26 E-value=0.12 Score=41.47 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=27.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+.+|++++.+++.+
T Consensus 23 IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~ 53 (255)
T d1fmca_ 23 IGKEIAITFATAGASVVVSDINADAANHVVD 53 (255)
T ss_dssp HHHHHHHHHHTTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776543
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.22 E-value=0.11 Score=41.79 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=27.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+.+|++++.+++.+
T Consensus 17 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 47 (256)
T d1k2wa_ 17 IGRAFAEAYVREGARVAIADINLEAARATAA 47 (256)
T ss_dssp HHHHHHHHHHHTTEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.19 E-value=0.13 Score=41.37 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=27.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+.+|++++.+++.+
T Consensus 20 IG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~ 50 (259)
T d1xq1a_ 20 IGHAIVEEFAGFGAVIHTCARNEYELNECLS 50 (259)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988876654
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=89.17 E-value=0.12 Score=37.71 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=37.6
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHHHh--------CC--CCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSD--------MG--VPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~--------~g--~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
+|.++|..|+..|. ++.++|+++++.+.... .+ .....+..+.+++||+|+++...
T Consensus 12 VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~ 79 (146)
T d1hyha1 12 VGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGN 79 (146)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSC
T ss_pred HHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccc
Confidence 37889998888774 89999999987643221 11 12222334567899999998764
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=89.17 E-value=0.13 Score=41.53 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=27.8
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+.+|++++.+++.+
T Consensus 18 IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~ 48 (268)
T d2bgka1 18 IGETTAKLFVRYGAKVVIADIADDHGQKVCN 48 (268)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.07 E-value=0.13 Score=41.66 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=27.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+.+|++++.+++.+
T Consensus 16 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 46 (274)
T d1xhla_ 16 IGRSAAVIFAKEGAQVTITGRNEDRLEETKQ 46 (274)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=89.04 E-value=0.13 Score=41.04 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=26.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|.+.+|++++.++..
T Consensus 17 IG~aia~~la~~Ga~V~i~~r~~~~~~~~~ 46 (251)
T d1vl8a_ 17 LGFGIAQGLAEAGCSVVVASRNLEEASEAA 46 (251)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 589999999999999999999998876554
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.97 E-value=0.13 Score=41.40 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=28.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|++++.+++.+
T Consensus 26 IG~aiA~~la~~G~~Vil~~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 26 IGREMAYHLAKMGAHVVVTARSKETLQKVVS 56 (269)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998877754
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=88.84 E-value=0.16 Score=36.75 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=39.1
Q ss_pred CcHHHHHHHHhCC--CeEEEEcCChhhHHHHHh----C------CCCC-CCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSD----M------GVPT-KETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~----~------g~~~-~~s~~e~~~~adiVi~~vp~ 56 (301)
+|.++|..|+..| .++.++|+++++.+.... . ..+. .++..+++++||+|+++...
T Consensus 11 VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~ 79 (142)
T d1guza1 11 VGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGL 79 (142)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSC
T ss_pred HHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEec
Confidence 4788999999888 489999999887543221 1 1222 23445678899999999753
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.83 E-value=0.2 Score=38.55 Aligned_cols=56 Identities=7% Similarity=0.058 Sum_probs=39.1
Q ss_pred CcHHHHHHHHhCCCeEEE--EcCChhhHHHHHhC------CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGYKMAV--HDVNCNVMKMFSDM------GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~--~dr~~~~~~~l~~~------g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
+|+.+++.|++.||+|.+ ..|++++...+... ...-..+..++++++|.|+.+...
T Consensus 15 iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~ 78 (252)
T d2q46a1 15 TGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA 78 (252)
T ss_dssp THHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEee
Confidence 699999999999988655 46888877655432 111123445677889999988753
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=88.22 E-value=0.1 Score=38.98 Aligned_cols=89 Identities=11% Similarity=0.103 Sum_probs=52.5
Q ss_pred CcHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcCCCccccCCCCC
Q 022170 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSV 78 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~~~~~l~~~~~~ 78 (301)
||+.++..|.+. ++++. ++||+++.... .+.....+..+...+.|+|++|+|+... .++... .++
T Consensus 14 ig~~~~~~l~~~~~~elvav~~~~~~~~~~---~~~~~~~~~~~~~~~~D~Vvi~tp~~~h--~~~a~~---aL~----- 80 (170)
T d1f06a1 14 LGRSVEKLIAKQPDMDLVGIFSRRATLDTK---TPVFDVADVDKHADDVDVLFLCMGSATD--IPEQAP---KFA----- 80 (170)
T ss_dssp HHHHHHHHHTTCSSEEEEEEEESSSCCSSS---SCEEEGGGGGGTTTTCSEEEECSCTTTH--HHHHHH---HHT-----
T ss_pred HHHHHHHHHHhCCCcEEEEEEecccccccc---cccccchhhhhhccccceEEEeCCCccc--HHHHHH---HHH-----
Confidence 577777777764 46654 67888764322 2334445666677889999999997653 333321 232
Q ss_pred CCeEEEEeCC---CCHHHHHHHHHHHh
Q 022170 79 RPQLLIDSST---IDPQTSRNISAAVS 102 (301)
Q Consensus 79 ~~~ivid~st---~~p~~~~~~~~~~~ 102 (301)
.|+-+|.+.. ..++..+++.+..+
T Consensus 81 aG~~vv~~~~~~~~~~~~~~~l~~~A~ 107 (170)
T d1f06a1 81 QFACTVDTYDNHRDIPRHRQVMNEAAT 107 (170)
T ss_dssp TTSEEECCCCCGGGHHHHHHHHHHHHH
T ss_pred CCCcEEEecCccccCHHHHHHHHHHHH
Confidence 4555665533 33455555554443
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=88.19 E-value=0.17 Score=40.04 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=28.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 32 (301)
+|.++|+.|++.|++|++.+|+.++.++..+.
T Consensus 17 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 48 (241)
T d2a4ka1 17 IGRAALDLFAREGASLVAVDREERLLAEAVAA 48 (241)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 48999999999999999999999988776654
|
| >d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Ketopantoate reductase PanE domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=88.07 E-value=2.8 Score=28.79 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022170 250 LNLALASAKEVGVDCPLTSQAQDIYAKL 277 (301)
Q Consensus 250 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a 277 (301)
.+.++++++++|+++|..+.++++.+..
T Consensus 94 ~G~vv~~a~~~gi~tP~~~~l~~lik~~ 121 (124)
T d1ks9a1 94 NGFLLRRARAHGIAVPENTRLFEMVKRK 121 (124)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 4689999999999999999999988654
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=87.96 E-value=0.17 Score=41.24 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=27.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|++.+|+.++.++..+
T Consensus 37 IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~ 67 (294)
T d1w6ua_ 37 LGKGMTTLLSSLGAQCVIASRKMDVLKATAE 67 (294)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988765543
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=87.47 E-value=0.22 Score=37.52 Aligned_cols=56 Identities=5% Similarity=0.056 Sum_probs=38.7
Q ss_pred cHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC--------CC-------CCCCCHHHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM--------GV-------PTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~--------g~-------~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
|.+++..|.+.|. +++++||++++.+++... .. .....+.+....+|+||-|+|-.
T Consensus 30 arai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~Tp~G 101 (182)
T d1vi2a1 30 STAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVG 101 (182)
T ss_dssp HHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSSTT
T ss_pred HHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceeccccCCc
Confidence 6778888888886 689999998877654321 11 11123445667899999999954
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.47 E-value=0.19 Score=41.23 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=26.7
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|.+.+|++++.+...
T Consensus 24 IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~ 53 (297)
T d1yxma1 24 IGKAIVKELLELGSNVVIASRKLERLKSAA 53 (297)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 589999999999999999999998876554
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=87.38 E-value=0.18 Score=40.25 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=27.6
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|..|++.|++|.+.+|+.++.+++.+
T Consensus 12 iG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~ 42 (252)
T d1zmta1 12 GGMGSALRLSEAGHTVACHDESFKQKDELEA 42 (252)
T ss_dssp THHHHHHHHHHTTCEEEECCGGGGSHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHh
Confidence 6999999999999999999999888777654
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=87.15 E-value=0.2 Score=37.14 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=38.8
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHH----HHhC----C--CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM----G--VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~----l~~~----g--~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.++|..|+..|. ++.++|+++++++. +... + ........+.+++||+|+++...+
T Consensus 31 VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitAg~~ 99 (160)
T d1i0za1 31 VGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVR 99 (160)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEecCCc
Confidence 48899999999997 79999999887632 2221 1 111223345678999999977643
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=87.14 E-value=0.18 Score=39.73 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=25.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
||.++|+.|++.|++|.+.+|+++.+++.
T Consensus 16 IG~aia~~l~~~Ga~V~~~~r~~~~l~~~ 44 (234)
T d1o5ia_ 16 IGRAVADVLSQEGAEVTICARNEELLKRS 44 (234)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHhc
Confidence 58999999999999999999998766543
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=87.12 E-value=0.61 Score=38.06 Aligned_cols=136 Identities=9% Similarity=0.079 Sum_probs=81.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCe--EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhc
Q 022170 140 GGSEDAYQAAKPLFLSMGKNT--IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSS 211 (301)
Q Consensus 140 gg~~~~~~~~~~ll~~~~~~~--~~~g~~g~a~~~k~~~N~~~~~~~~~~~E~~~l~~~------~G~~~~~~~~~~~~~ 211 (301)
++.++.....+..+......+ ...........+|.+.|.+....+...+|++.+.++ .++|..++.++++.|
T Consensus 114 S~~k~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~Al~~~~i~syaQGf~LL~~as~~~~w~ldl~~Ia~iWr~G 193 (300)
T d1pgja1 114 TMYKTERQANASNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAG 193 (300)
T ss_dssp HHTHHHHHHHHHHSTTTTCCCCCCCSCCSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSS
T ss_pred hCChHHHHHHHhhcccccCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccchHHHHHhcCC
Confidence 455555555555655443322 222345677889999999999999999999999976 368999999999988
Q ss_pred C-CCccccccCCCCCCcccCCCCCCCCCCCcc--hhhHHHHH-HHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 022170 212 S-ARCWSSDSYNPVPGVMEGVPASRNYGGGFA--SKLMAKDL-NLALASAKEVGVDCPLTSQAQDIYAKLC 278 (301)
Q Consensus 212 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~kd~-~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 278 (301)
+ .+|+++..... .+...+-..+....|. +....+.. +.+...+.+.|+|+|.+.+++..|....
T Consensus 194 CIIRS~LL~~i~~---a~~~~~~l~~l~~~f~~~~~~~~~~~~r~v~~~~~~~gip~P~lssaL~y~~~~~ 261 (300)
T d1pgja1 194 CILQGYLLKPMTE---AFEKNPNISNLMCAFQTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMF 261 (300)
T ss_dssp STTCBTTHHHHHH---HHHHCTTCSCTTGGGHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT
T ss_pred ceeeHHHHHHHHH---HhhcCCccchhhHHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 6 34444321100 0000000000001121 11222222 3444556788999999999998776553
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=87.05 E-value=0.14 Score=37.22 Aligned_cols=56 Identities=11% Similarity=0.036 Sum_probs=33.5
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHHH----HhC-----CCCCCCCHHHHHhcCCEEEEecCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM-----GVPTKETPFEVAEASDVVITMLPS 56 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~l----~~~-----g~~~~~s~~e~~~~adiVi~~vp~ 56 (301)
+|.++|..|..+|. ++.++|+++++++.. ... .....+...+.+++||+|+++...
T Consensus 12 VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~ 78 (142)
T d1y6ja1 12 VGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGA 78 (142)
T ss_dssp HHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC
T ss_pred HHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEeccc
Confidence 38889999998885 799999998865322 211 011122234556789998888553
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.02 E-value=0.21 Score=39.81 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=27.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+.+|++++.++..+
T Consensus 15 IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~ 45 (254)
T d2gdza1 15 IGRAFAEALLLKGAKVALVDWNLEAGVQCKA 45 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998776654
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.01 E-value=0.065 Score=38.35 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=44.5
Q ss_pred cHHHHHHHHhCC-CeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhhhcC
Q 022170 2 GFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 67 (301)
Q Consensus 2 G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v~~~ 67 (301)
|..+.++|.+.| ++|+..+.+.+.+ .|.+...|+.++-...|++++++|. .. +.+++.+
T Consensus 24 g~~v~~~L~~~~~g~v~pVnP~~~~i-----~G~~~y~sl~dlp~~vDlvvi~vp~-~~-~~~~~~~ 83 (129)
T d2csua1 24 GYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPK-RF-VKDTLIQ 83 (129)
T ss_dssp HHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCH-HH-HHHHHHH
T ss_pred HHHHHHHHHHcCCCcEEEeccCcccc-----CCeEeecchhhcCCCCceEEEecCh-HH-hHHHHHH
Confidence 566788887766 6888888765443 4778888998887889999999994 44 6777654
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=86.61 E-value=0.17 Score=40.51 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=26.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 30 (301)
+|.++|+.|++.|++|.+.+|++++.++..
T Consensus 21 IG~aia~~la~~Ga~V~i~~r~~~~~~~~~ 50 (260)
T d1h5qa_ 21 IGLAFTRAVAAAGANVAVIYRSAADAVEVT 50 (260)
T ss_dssp HHHHHHHHHHHTTEEEEEEESSCTTHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 589999999999999999999988776554
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=86.39 E-value=0.47 Score=35.31 Aligned_cols=34 Identities=9% Similarity=-0.019 Sum_probs=25.6
Q ss_pred cHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCCC
Q 022170 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 35 (301)
Q Consensus 2 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~ 35 (301)
|...++.+...|. +|++.|+++++.+...+.|+.
T Consensus 40 Gl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~ 74 (174)
T d1jqba2 40 GLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGAT 74 (174)
T ss_dssp HHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCS
T ss_pred hhhhhhhhhcccccccccccchhhhHHHHHhhCcc
Confidence 4555555566785 799999999999888877753
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=85.83 E-value=0.32 Score=35.45 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=37.9
Q ss_pred cHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC--------C--CCC-CCCHHHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM--------G--VPT-KETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~--------g--~~~-~~s~~e~~~~adiVi~~vp~~ 57 (301)
|.++|..|..++. ++.+||+++++.+..... + ... ..+..+.++++|+|+++...+
T Consensus 15 G~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~ 82 (150)
T d1t2da1 15 GGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT 82 (150)
T ss_dssp HHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred HHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence 6889987877774 799999998876433211 1 122 124456678999999987743
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=85.31 E-value=0.35 Score=40.06 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=40.2
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC---------------CCCCCCCHHHHHhcCCEEEEecC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---------------GVPTKETPFEVAEASDVVITMLP 55 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~---------------g~~~~~s~~e~~~~adiVi~~vp 55 (301)
+|+.++..|.++||+|.+..|+.++.+.+... .+.-..++.+++.++|.|+-+.-
T Consensus 23 IGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~~a~ 92 (342)
T d1y1pa1 23 VASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIAS 92 (342)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEECCC
T ss_pred HHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhhhcc
Confidence 48999999999999999999998877655431 12223355677888998886554
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=84.83 E-value=0.31 Score=35.22 Aligned_cols=56 Identities=13% Similarity=0.232 Sum_probs=38.6
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHH----HHhC----C---CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM----G---VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~----l~~~----g---~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.++|..|+..|. ++.++|+++++++. +... + ....++ .+.+++||+|+++...+
T Consensus 12 VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~-~~~~~daDvVVitaG~~ 80 (143)
T d1llda1 12 VGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAGPR 80 (143)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCC-HHHhhCCcEEEEecccc
Confidence 38899999998886 79999999987643 2221 1 112234 34578899999987654
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=84.79 E-value=0.089 Score=39.67 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=37.5
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----CCC-----CCCCHHHHHhcCCEEEEecCCC
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVP-----TKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~-----~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+++++..|.+.| +|++++|++++++.+.+. ... ...++......+|+||-|+|.+
T Consensus 30 arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~g 94 (177)
T d1nvta1 30 ARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIG 94 (177)
T ss_dssp HHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTT
T ss_pred HHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCccc
Confidence 356677777666 899999999998877542 110 1123334456789999999964
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=84.62 E-value=0.33 Score=38.53 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=25.1
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
||.++|+.|++.|++|.+.+|+++..+..
T Consensus 17 IG~aia~~la~~G~~V~~~~~~~~~~~~~ 45 (248)
T d2d1ya1 17 IGRAIAQAFAREGALVALCDLRPEGKEVA 45 (248)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSTTHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 58999999999999999999998765443
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=84.47 E-value=0.51 Score=35.09 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=33.8
Q ss_pred CCeEEEEcCChhhHHHHHh--------CC----CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 13 GYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 13 G~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+.++..+|+++++++.... .+ +..+++..|++++||+|++++...
T Consensus 31 ~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv~~~~~g 87 (171)
T d1obba1 31 GSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVINTAMVG 87 (171)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEEECCCTT
T ss_pred CCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEeeecccc
Confidence 4689999999998754321 12 334578999999999999998754
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.41 E-value=0.32 Score=38.73 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=26.8
Q ss_pred CcHHHHHHHHh---CCCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMK---AGYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~---~G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++ .|++|++.+|++++.+.+.+
T Consensus 18 IG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~ 51 (259)
T d1oaaa_ 18 FGRALAPQLARLLSPGSVMLVSARSESMLRQLKE 51 (259)
T ss_dssp HHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHH
Confidence 58999999986 79999999999998877653
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=84.25 E-value=0.19 Score=35.49 Aligned_cols=56 Identities=21% Similarity=0.143 Sum_probs=39.4
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC----CCH---HHH-HhcCCEEEEecCCCcc
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETP---FEV-AEASDVVITMLPSSSH 59 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s~---~e~-~~~adiVi~~vp~~~~ 59 (301)
|..+++.| .|++|.+.+.++++.+.+...|..+. ++. .++ +.+|+.++++.+++..
T Consensus 12 g~~l~~~L--~~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~ 75 (129)
T d2fy8a1 12 TLECLREL--RGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSE 75 (129)
T ss_dssp HHHHHHTS--CGGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHH
T ss_pred HHHHHHHH--cCCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhh
Confidence 56667766 47789999999999999888774331 122 222 4578999999887654
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=83.44 E-value=0.4 Score=37.63 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=42.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHH-hcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVA-EASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~-~~adiVi~~vp~~ 57 (301)
+|..+|+.|.+.|.+|++.|.+++.++.+... |... .++.+.. ..|||++-|--..
T Consensus 50 VG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~-~~~~~~~~~~cDIl~PcA~~~ 107 (230)
T d1leha1 50 VAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADA-VAPNAIYGVTCDIFAPCALGA 107 (230)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEE-CCGGGTTTCCCSEEEECSCSC
T ss_pred HHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcc-cCCcccccccccEeccccccc
Confidence 47899999999999999999999998877654 5444 3445543 5799999876533
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.21 E-value=1 Score=32.68 Aligned_cols=34 Identities=12% Similarity=0.296 Sum_probs=28.3
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 34 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~ 34 (301)
+|...++.+...|++|++.++++++.+.+.+.|+
T Consensus 39 iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga 72 (168)
T d1rjwa2 39 LGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA 72 (168)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred chhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCc
Confidence 5677777777889999999999999988887764
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=82.65 E-value=0.46 Score=37.85 Aligned_cols=30 Identities=13% Similarity=0.340 Sum_probs=24.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCC-hhhHHHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVN-CNVMKMFS 30 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~-~~~~~~l~ 30 (301)
||.++|+.|++.|++|.+.+|+ ++..+++.
T Consensus 16 IG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~ 46 (260)
T d1x1ta1 16 IGLGIATALAAQGADIVLNGFGDAAEIEKVR 46 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH
Confidence 5899999999999999999987 45555443
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=82.61 E-value=0.33 Score=38.30 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=26.8
Q ss_pred CcHHHHHHHHhCCCe-------EEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYK-------MAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~-------V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|+++|++ |.+++|++++.+++.+
T Consensus 13 IG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~ 50 (240)
T d2bd0a1 13 IGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISL 50 (240)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHH
Confidence 589999999999987 8889999998877653
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=82.53 E-value=1.3 Score=34.44 Aligned_cols=86 Identities=8% Similarity=0.031 Sum_probs=52.6
Q ss_pred CCeEE-EEcCChhhHHHHHhC-CC---CCCCCHHHHHh--cCCEEEEecCCCccchhhhhcCC-CccccCCCCCCCeEEE
Q 022170 13 GYKMA-VHDVNCNVMKMFSDM-GV---PTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNGP-NGLLQGGNSVRPQLLI 84 (301)
Q Consensus 13 G~~V~-~~dr~~~~~~~l~~~-g~---~~~~s~~e~~~--~adiVi~~vp~~~~~~~~v~~~~-~~~l~~~~~~~~~ivi 84 (301)
+++|. ++|+++++.+.+.+. ++ ...++++++++ +-|+|++|+|+... ...+...+ .+... .....+++
T Consensus 45 ~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp~~~h-~~~~~~al~aG~~~---~~~k~V~~ 120 (237)
T d2nvwa1 45 QFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVPEH-YEVVKNILEHSSQN---LNLRYLYV 120 (237)
T ss_dssp TEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHHHH-HHHHHHHHHHSSSC---SSCCEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCCCcch-hhHHHHHHHhcccc---cCCceEEE
Confidence 56766 789999998776543 43 33579999885 57899999997654 33332211 11110 11224666
Q ss_pred EeC-CCCHHHHHHHHHHHh
Q 022170 85 DSS-TIDPQTSRNISAAVS 102 (301)
Q Consensus 85 d~s-t~~p~~~~~~~~~~~ 102 (301)
+-- +.+.++++++.+...
T Consensus 121 EKPla~~~~e~~~l~~~a~ 139 (237)
T d2nvwa1 121 EWALAASVQQAEELYSISQ 139 (237)
T ss_dssp ESSSSSSHHHHHHHHHHHH
T ss_pred eccccCCHHHHHHHHHHHh
Confidence 652 456777788777654
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=82.44 E-value=0.99 Score=35.96 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=39.5
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH--------HHHHhCCCCC-------CCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM--------KMFSDMGVPT-------KETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~--------~~l~~~g~~~-------~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|+.++..|.++||+|++..|++... ..+...++.. ..+..+...+++.++.+++..
T Consensus 15 iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~~~~ 86 (312)
T d1qyda_ 15 IGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISALAGG 86 (312)
T ss_dssp THHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECCCCS
T ss_pred HHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhhhhhc
Confidence 58999999999999999999875421 2223334321 123445678899999988754
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.31 E-value=0.38 Score=38.11 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=23.0
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~ 26 (301)
+|.++|+.|+++|++|++.+|+.++.
T Consensus 13 IG~aia~~la~~G~~Vvi~~r~~~~~ 38 (266)
T d1mxha_ 13 IGHSIAVRLHQQGFRVVVHYRHSEGA 38 (266)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCchHH
Confidence 58999999999999999999886653
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=81.67 E-value=0.71 Score=33.10 Aligned_cols=56 Identities=16% Similarity=0.092 Sum_probs=38.0
Q ss_pred CcHHHHHHHHhCCC-eEEEEcCChhhHHHHHh----------CCCCC--CCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD----------MGVPT--KETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~----------~g~~~--~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.++|..|+.++. ++.++|+++++.+.... ..... +.+.+ .++++|+|+++...+
T Consensus 12 VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-~~~~advvvitag~~ 80 (142)
T d1uxja1 12 VGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-DTANSDVIVVTSGAP 80 (142)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-HhcCCCEEEEeeecc
Confidence 37889988888775 89999998887543211 11222 34444 468899999998654
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=81.39 E-value=0.49 Score=37.36 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=23.3
Q ss_pred cHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022170 2 GFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (301)
Q Consensus 2 G~~lA~~L~~~G~~V~~~dr~~~~~~~l 29 (301)
|.++|+.|++.|++|++.+|+++..+.+
T Consensus 20 G~aiA~~l~~~G~~V~i~~~~~~~~~~~ 47 (258)
T d1qsga_ 20 AYGIAQAMHREGAELAFTYQNDKLKGRV 47 (258)
T ss_dssp HHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 5889999999999999999986654443
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.16 E-value=0.41 Score=38.42 Aligned_cols=31 Identities=6% Similarity=0.143 Sum_probs=26.2
Q ss_pred CcHHHHHHHHhC-CCeEEEEcCChhhHHHHHh
Q 022170 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~ 31 (301)
+|.++|+.|++. |+.|++++|++++.++..+
T Consensus 15 IG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~ 46 (275)
T d1wmaa1 15 IGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQ 46 (275)
T ss_dssp HHHHHHHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence 589999999975 8999999999998766543
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=80.97 E-value=0.65 Score=34.14 Aligned_cols=45 Identities=16% Similarity=0.074 Sum_probs=33.6
Q ss_pred CCeEEEEcCChhhHHHHHhC---------CCCCCCCHHHHHhcCCEEEEecCCC
Q 022170 13 GYKMAVHDVNCNVMKMFSDM---------GVPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 13 G~~V~~~dr~~~~~~~l~~~---------g~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+.++.++|+++++.+..... .....++..+++++||+|+++...+
T Consensus 29 ~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~~~ 82 (162)
T d1up7a1 29 IDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPG 82 (162)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCCTT
T ss_pred ccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecccC
Confidence 35899999999987643321 2344578889999999999998754
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.62 E-value=0.49 Score=34.81 Aligned_cols=56 Identities=16% Similarity=0.298 Sum_probs=38.3
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHH----HHHhC----CC---CCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSDM----GV---PTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~----~l~~~----g~---~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
.|.++|..|...|+ ++.++|+++++++ .+... +. ....+ .+.+++||+|+++...+
T Consensus 30 VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d-~~~~~~adivvitag~~ 98 (159)
T d2ldxa1 30 VGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD-YNVSANSKLVIITAGAR 98 (159)
T ss_dssp HHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS-GGGGTTEEEEEECCSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc-hhhhccccEEEEecccc
Confidence 38899999999886 7999999987754 33322 11 11234 34568999999987643
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=80.57 E-value=0.47 Score=35.23 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=32.5
Q ss_pred eEEEEcCChhhHHHHHhC--------C----CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 15 KMAVHDVNCNVMKMFSDM--------G----VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 15 ~V~~~dr~~~~~~~l~~~--------g----~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
+|.++|+++++.+..... + ...+++..|++++||+|+++...+
T Consensus 34 eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vvitag~~ 88 (167)
T d1u8xx1 34 KLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMAHIRVG 88 (167)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEECCCTT
T ss_pred EEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEEECCCcC
Confidence 799999999987532221 2 334678899999999999998754
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=80.53 E-value=0.51 Score=37.62 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=21.9
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChh
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCN 24 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~ 24 (301)
+|.++|+.|++.|++|++.+|+++
T Consensus 19 IG~AiA~~la~~Ga~V~i~~r~~~ 42 (274)
T d2pd4a1 19 IAYGIAQSCFNQGATLAFTYLNES 42 (274)
T ss_dssp HHHHHHHHHHTTTCEEEEEESSTT
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHH
Confidence 588999999999999999999864
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=80.46 E-value=0.61 Score=36.84 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=23.4
Q ss_pred CcHHHHHHHHhCCCeEEEEcCChhhHHH
Q 022170 1 MGFRMASNLMKAGYKMAVHDVNCNVMKM 28 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~dr~~~~~~~ 28 (301)
+|.++|+.|++.|++|.+.+|+++..+.
T Consensus 22 IG~aiA~~la~~Ga~V~i~~~~~~~~~~ 49 (256)
T d1ulua_ 22 LGFAIAAKLKEAGAEVALSYQAERLRPE 49 (256)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence 4899999999999999999998654433
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=80.38 E-value=0.87 Score=30.95 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHHhcCCEEEEecCCCccchhhh
Q 022170 4 RMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV 64 (301)
Q Consensus 4 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiVi~~vp~~~~~~~~v 64 (301)
-+...|.+.|..|.+||..-...+ ...+.....++.++...+|+|++...+ .. +.++
T Consensus 39 ~ii~~L~~~g~~v~iyDP~v~~~~--~~~~~~~~~~l~~~~~~sDiII~~~~~-~~-~~~~ 95 (108)
T d1dlja3 39 DVIDILKSKDIKIIIYEPMLNKLE--SEDQSVLVNDLENFKKQANIIVTNRYD-NE-LQDV 95 (108)
T ss_dssp HHHHHHHTSSCEEEEECTTCSCCC--TTCCSEECCCHHHHHHHCSEEECSSCC-GG-GGGG
T ss_pred HHHHHHhccccceeeecCCcChhH--hccCCEEEeCHHHHHhhCCEEEEcCCc-hH-HHhc
Confidence 467789999999999997543321 123455678999999999987766553 33 5544
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.14 E-value=0.68 Score=33.27 Aligned_cols=56 Identities=9% Similarity=0.161 Sum_probs=38.2
Q ss_pred CcHHHHHHHHhCCC--eEEEEcCChhhHHH----HHh----CC----CCCCCCHHHHHhcCCEEEEecCCC
Q 022170 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSD----MG----VPTKETPFEVAEASDVVITMLPSS 57 (301)
Q Consensus 1 mG~~lA~~L~~~G~--~V~~~dr~~~~~~~----l~~----~g----~~~~~s~~e~~~~adiVi~~vp~~ 57 (301)
.|.++|..|+.+|. ++.++|+++++.+. +.. .. +....+ .+.++++|+|+++...+
T Consensus 11 VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiVvitag~~ 80 (142)
T d1ojua1 11 VGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGLA 80 (142)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEEEEecccc
Confidence 38889998887774 79999999988543 211 11 112234 36788999999987643
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=80.10 E-value=0.64 Score=36.60 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=25.0
Q ss_pred CcHHHHHHHHhCCCeEEEE-cCChhhHHHHHh
Q 022170 1 MGFRMASNLMKAGYKMAVH-DVNCNVMKMFSD 31 (301)
Q Consensus 1 mG~~lA~~L~~~G~~V~~~-dr~~~~~~~l~~ 31 (301)
+|.++|+.|++.|++|.+. .|+++..+.+.+
T Consensus 13 IG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~ 44 (244)
T d1edoa_ 13 IGKAIALSLGKAGCKVLVNYARSAKAAEEVSK 44 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 5899999999999999875 677777666543
|